Query 045440
Match_columns 98
No_of_seqs 113 out of 742
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 23:25:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045440.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045440hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 96.6 0.0015 5.1E-08 44.2 3.5 46 18-64 59-104 (137)
2 3b5d_A Multidrug transporter E 96.5 0.004 1.4E-07 40.2 4.6 47 17-64 58-104 (110)
3 3l1l_A Arginine/agmatine antip 38.3 37 0.0013 25.0 4.1 28 46-73 409-436 (445)
4 2l2t_A Receptor tyrosine-prote 36.2 45 0.0015 18.1 3.2 11 63-73 33-43 (44)
5 2ks1_B Epidermal growth factor 27.7 73 0.0025 17.1 3.2 9 63-71 34-42 (44)
6 1l2w_I Outer membrane virulenc 22.7 29 0.001 20.1 0.9 19 10-28 43-61 (69)
7 3pe5_A Uncharacterized protein 14.8 39 0.0013 26.3 0.3 34 25-66 33-66 (403)
8 1a87_A Colicin N; bacteriocin, 12.9 1.6E+02 0.0055 22.3 3.1 13 38-51 282-294 (321)
9 3few_X Colicin S4; cell lysis, 12.6 2.8E+02 0.0096 22.1 4.6 21 38-59 460-481 (505)
10 1rh5_B Preprotein translocase 12.1 1.5E+02 0.0053 17.5 2.4 18 45-62 37-54 (74)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=96.64 E-value=0.0015 Score=44.22 Aligned_cols=46 Identities=20% Similarity=0.546 Sum_probs=34.2
Q ss_pred hhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhh
Q 045440 18 SFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNA 64 (98)
Q Consensus 18 T~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~ 64 (98)
.+.+...+--+..+++|+++|| |++|+.+++|+++.++|..+.+..
T Consensus 59 ay~iw~~l~pv~~~l~g~l~lg-E~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 59 AYAIWSGVGIVLISLLSWGFFG-QRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4555467778899999999999 999999999999999999998754
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=96.47 E-value=0.004 Score=40.21 Aligned_cols=47 Identities=19% Similarity=0.557 Sum_probs=39.6
Q ss_pred chhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhh
Q 045440 17 VSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNA 64 (98)
Q Consensus 17 lT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~ 64 (98)
..+.+...+--+.+.++|+++|| |++|+.+++|+.+.++|....+..
T Consensus 58 ~ay~i~~g~~~v~~~l~~~~~~~-E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 58 IAYAIWSGVGIVLISLLSWGFFG-QRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred hHHHHHhhHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34455456678889999999999 999999999999999999987653
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=38.29 E-value=37 Score=24.95 Aligned_cols=28 Identities=7% Similarity=0.043 Sum_probs=20.7
Q ss_pred hhHHhHHHHHHHHHHHHhhhcCCCCcCC
Q 045440 46 HVVLGMIIAVFGMIWYSNASTKPGGKER 73 (98)
Q Consensus 46 ~~~~G~~i~l~G~~~Ys~~k~~~~~~~~ 73 (98)
.-..|..+.+.|..+|-+.+.+.+++++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~~~~~~ 436 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRLHKNPY 436 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCcc
Confidence 3456888899999999988766554443
No 4
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=36.22 E-value=45 Score=18.06 Aligned_cols=11 Identities=27% Similarity=0.166 Sum_probs=4.4
Q ss_pred hhhcCCCCcCC
Q 045440 63 NASTKPGGKER 73 (98)
Q Consensus 63 ~~k~~~~~~~~ 73 (98)
+.|-+..++|+
T Consensus 33 ~~RRRr~~~kr 43 (44)
T 2l2t_A 33 YVRRKSIKKKR 43 (44)
T ss_dssp HHHTTCSSCCC
T ss_pred Hhhhhhhhhcc
Confidence 33444444343
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=27.75 E-value=73 Score=17.13 Aligned_cols=9 Identities=0% Similarity=-0.282 Sum_probs=3.5
Q ss_pred hhhcCCCCc
Q 045440 63 NASTKPGGK 71 (98)
Q Consensus 63 ~~k~~~~~~ 71 (98)
+.|-+.+++
T Consensus 34 ~~RRr~~~~ 42 (44)
T 2ks1_B 34 FMRRRHIVR 42 (44)
T ss_dssp HHHTTTCCS
T ss_pred HhhhhHhhc
Confidence 334443333
No 6
>1l2w_I Outer membrane virulence protein YOPE; chaperone and virulence protein; 2.00A {Yersinia pseudotuberculosis} SCOP: d.198.1.1
Probab=22.69 E-value=29 Score=20.07 Aligned_cols=19 Identities=26% Similarity=0.614 Sum_probs=15.9
Q ss_pred hhcccCcchhhhhhhHhHH
Q 045440 10 CIGRFTAVSFQVLGHMKTI 28 (98)
Q Consensus 10 ~i~~TSalT~sV~G~~K~i 28 (98)
+|.+.|.+.++|+|.+.+.
T Consensus 43 iierlssvahsvigfiqrm 61 (69)
T 1l2w_I 43 IIERLSSVAHSVIGFIQRM 61 (69)
T ss_dssp CEEECSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5678899999999988765
No 7
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.38A {Clostridium leptum}
Probab=14.81 E-value=39 Score=26.34 Aligned_cols=34 Identities=18% Similarity=0.425 Sum_probs=0.0
Q ss_pred HhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhc
Q 045440 25 MKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNAST 66 (98)
Q Consensus 25 ~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~ 66 (98)
+++..++++.++|++ +.|..+...|+.+.-|.++
T Consensus 33 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 66 (403)
T 3pe5_A 33 VSNVIIIILCVVFSG--------LGGVIVYAHGLLAGMYQNL 66 (403)
T ss_dssp ------------------------------------------
T ss_pred ccceEEEEehHHHHh--------hhHHHHHHHHHHHHHHhhc
Confidence 445556666666666 6676666666655555554
No 8
>1a87_A Colicin N; bacteriocin, toxin, pore-forming activity; 3.10A {Escherichia coli K12} SCOP: f.1.1.1
Probab=12.90 E-value=1.6e+02 Score=22.34 Aligned_cols=13 Identities=23% Similarity=0.327 Sum_probs=10.4
Q ss_pred eCCCccchhhHHhH
Q 045440 38 FGKEGLNLHVVLGM 51 (98)
Q Consensus 38 fg~~~~t~~~~~G~ 51 (98)
.+ -+.|+..++|+
T Consensus 282 ~g-lp~t~lGI~Gi 294 (321)
T 1a87_A 282 SG-LAVTALGVIGI 294 (321)
T ss_dssp TT-CCHHHHHHHHH
T ss_pred cc-ccchHHHHHHH
Confidence 55 78888999995
No 9
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=12.63 E-value=2.8e+02 Score=22.11 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=14.5
Q ss_pred eCCCccchhhHHhH-HHHHHHHH
Q 045440 38 FGKEGLNLHVVLGM-IIAVFGMI 59 (98)
Q Consensus 38 fg~~~~t~~~~~G~-~i~l~G~~ 59 (98)
++ -|.|+..++|+ +++++|.+
T Consensus 460 lG-~P~taIGIaGiILmAvVgAl 481 (505)
T 3few_X 460 LG-APAIAVGIVGILLAAVVGAL 481 (505)
T ss_dssp CC-SCSSHHHHHHHHHHHHHHHH
T ss_pred hc-CchhHHHHHHHHHHHHHHHH
Confidence 67 89999999985 44444443
No 10
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=12.13 E-value=1.5e+02 Score=17.52 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=11.0
Q ss_pred hhhHHhHHHHHHHHHHHH
Q 045440 45 LHVVLGMIIAVFGMIWYS 62 (98)
Q Consensus 45 ~~~~~G~~i~l~G~~~Ys 62 (98)
...+.|+.+.++|.+.|-
T Consensus 37 iak~~~iG~~imG~IGfi 54 (74)
T 1rh5_B 37 VAKVTALGISLLGIIGYI 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345666666666666554
Done!