Query 045440
Match_columns 98
No_of_seqs 113 out of 742
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 23:26:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045440.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045440hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 53.7 8.6 0.00063 17.5 3.1 20 48-67 2-21 (27)
2 d1fftb2 f.17.2.1 (B:27-117) Cy 45.7 3.5 0.00026 23.9 1.1 25 50-74 27-51 (91)
3 d1n1ea1 a.100.1.6 (A:198-357) 28.5 13 0.00093 23.2 1.8 52 14-68 1-52 (160)
4 d3dtub2 f.17.2.1 (B:30-129) Ba 25.4 34 0.0024 19.5 3.3 24 48-71 36-59 (100)
5 d3ehbb2 f.17.2.1 (B:1-107) Bac 23.8 44 0.0032 19.3 3.6 23 48-70 42-64 (107)
6 d1l2wi_ d.198.1.1 (I:) YopE ch 20.8 16 0.0012 19.2 0.9 19 10-28 38-56 (57)
7 d2axtj1 f.23.32.1 (J:7-40) Pho 18.7 32 0.0023 16.4 1.7 12 52-63 15-26 (34)
8 d1txga1 a.100.1.6 (A:181-335) 12.9 42 0.0031 20.6 1.6 48 17-65 3-53 (155)
9 d1cola_ f.1.1.1 (A:) Colicin A 12.8 60 0.0044 21.3 2.5 22 38-61 161-182 (197)
10 d1kqfb2 f.23.22.1 (B:246-290) 8.4 60 0.0044 16.4 0.9 25 36-61 6-30 (45)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=53.69 E-value=8.6 Score=17.52 Aligned_cols=20 Identities=30% Similarity=0.655 Sum_probs=14.3
Q ss_pred HHhHHHHHHHHHHHHhhhcC
Q 045440 48 VLGMIIAVFGMIWYSNASTK 67 (98)
Q Consensus 48 ~~G~~i~l~G~~~Ys~~k~~ 67 (98)
++|.+++..|..+|...+..
T Consensus 2 vlgli~~tl~glf~aayqqy 21 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQQY 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred eeeehHHHHHHHHHHHHHHh
Confidence 46888887888777766543
No 2
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=45.71 E-value=3.5 Score=23.87 Aligned_cols=25 Identities=12% Similarity=0.021 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHhhhcCCCCcCCC
Q 045440 50 GMIIAVFGMIWYSNASTKPGGKERR 74 (98)
Q Consensus 50 G~~i~l~G~~~Ys~~k~~~~~~~~~ 74 (98)
.+.+.+.|...|...|+|+++.+++
T Consensus 27 iv~v~V~~~~~~~~~ryR~~~~~~~ 51 (91)
T d1fftb2 27 IVVIPAILMAVGFAWKYRASNKDAK 51 (91)
T ss_dssp TTTTHHHHHHHTTTTTTTTSTTTCS
T ss_pred HHHHHHHHHHHhhheeeeccCCccC
Confidence 3455678889999999998765544
No 3
>d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}
Probab=28.47 E-value=13 Score=23.21 Aligned_cols=52 Identities=13% Similarity=-0.043 Sum_probs=33.5
Q ss_pred cCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcCC
Q 045440 14 FTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTKP 68 (98)
Q Consensus 14 TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~~ 68 (98)
|......++|.+|++.-+..|++--- .. -.|.-+.+++..=-=+..+.+...
T Consensus 1 tD~~GvE~~galKNi~Aia~Gi~~gl--~~-g~N~~aali~~g~~Em~~~~~~~g 52 (160)
T d1n1ea1 1 TDTVGCEVASAVKNVLAIGSGVANGL--GM-GLNARAALIMRGLLEIRDLTAALG 52 (160)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHT--TC-CHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHc--CC-ChhHHHHHHHHHHHHHHHHHHHhC
Confidence 44567889999999999999987411 11 145556666555555555555543
No 4
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=25.39 E-value=34 Score=19.45 Aligned_cols=24 Identities=17% Similarity=0.119 Sum_probs=18.6
Q ss_pred HHhHHHHHHHHHHHHhhhcCCCCc
Q 045440 48 VLGMIIAVFGMIWYSNASTKPGGK 71 (98)
Q Consensus 48 ~~G~~i~l~G~~~Ys~~k~~~~~~ 71 (98)
..++.+.+.|...|...|.|.++.
T Consensus 36 ~~~I~~~V~~~l~~~~~~~r~~~~ 59 (100)
T d3dtub2 36 IAAITIFVTLLILYAVWRFHEKRN 59 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHBTTTC
T ss_pred HHHHHHHHHHHHHHHhhhhhccCC
Confidence 456677788999999999887643
No 5
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=23.78 E-value=44 Score=19.26 Aligned_cols=23 Identities=9% Similarity=0.028 Sum_probs=17.6
Q ss_pred HHhHHHHHHHHHHHHhhhcCCCC
Q 045440 48 VLGMIIAVFGMIWYSNASTKPGG 70 (98)
Q Consensus 48 ~~G~~i~l~G~~~Ys~~k~~~~~ 70 (98)
+.++.+.+.|...|...|+|+++
T Consensus 42 ~~~I~~~V~~~~~~~~~~~r~~~ 64 (107)
T d3ehbb2 42 ITAVTIFVCLLLLICIVRFNRRA 64 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHSBTTT
T ss_pred HHHHHHHHHHHHHHHhhhhhccC
Confidence 45666677888999999987664
No 6
>d1l2wi_ d.198.1.1 (I:) YopE chaperone SycE {Yersinia pestis [TaxId: 632]}
Probab=20.79 E-value=16 Score=19.17 Aligned_cols=19 Identities=26% Similarity=0.614 Sum_probs=15.8
Q ss_pred hhcccCcchhhhhhhHhHH
Q 045440 10 CIGRFTAVSFQVLGHMKTI 28 (98)
Q Consensus 10 ~i~~TSalT~sV~G~~K~i 28 (98)
++.+.|.+.++++|.+|+.
T Consensus 38 i~e~lss~ahs~i~fi~rm 56 (57)
T d1l2wi_ 38 IIERLSSVAHSVIGFIQRM 56 (57)
T ss_dssp CEEECSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4577899999999999874
No 7
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=18.67 E-value=32 Score=16.44 Aligned_cols=12 Identities=25% Similarity=0.897 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHh
Q 045440 52 IIAVFGMIWYSN 63 (98)
Q Consensus 52 ~i~l~G~~~Ys~ 63 (98)
+++++|.++|.-
T Consensus 15 vi~~vG~FfYGs 26 (34)
T d2axtj1 15 VIVIVGLFFYGA 26 (34)
T ss_dssp HHHHHHHHHHHT
T ss_pred hHhheeeeeeee
Confidence 467889898864
No 8
>d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=12.92 E-value=42 Score=20.57 Aligned_cols=48 Identities=6% Similarity=0.084 Sum_probs=29.0
Q ss_pred chhhhhhhHhHHHHhhhhhee---eCCCccchhhHHhHHHHHHHHHHHHhhh
Q 045440 17 VSFQVLGHMKTILVLIMGFLF---FGKEGLNLHVVLGMIIAVFGMIWYSNAS 65 (98)
Q Consensus 17 lT~sV~G~~K~i~~i~~s~~~---fg~~~~t~~~~~G~~i~l~G~~~Ys~~k 65 (98)
+...++|.+|++..+..|++- +| +...-.|.-+.+++..=-=+....+
T Consensus 3 iGvEi~galKNi~Aia~Gi~~gl~~g-~~~~~~N~~aali~~g~~Em~~~~~ 53 (155)
T d1txga1 3 IGTEITSALKNVYSIAIAWIRGYESR-KNVEMSNAKGVIATRAINEMAELIE 53 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHhhcc-cccchHHHHHHHHHHHHhhHhhHHH
Confidence 456789999999999999963 33 3322335555555544333333333
No 9
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=12.79 E-value=60 Score=21.33 Aligned_cols=22 Identities=9% Similarity=-0.070 Sum_probs=14.5
Q ss_pred eCCCccchhhHHhHHHHHHHHHHH
Q 045440 38 FGKEGLNLHVVLGMIIAVFGMIWY 61 (98)
Q Consensus 38 fg~~~~t~~~~~G~~i~l~G~~~Y 61 (98)
+| -|.|+..++|+ +.+..+.-|
T Consensus 161 ~g-~~~~~iGI~g~-li~~~v~al 182 (197)
T d1cola_ 161 LG-VPAIAVGIAGI-LLAAVVGAL 182 (197)
T ss_dssp CC-SCHHHHHHHHH-HHHHHHHHH
T ss_pred cc-ccccHHHHHHH-HHHHHHHHH
Confidence 46 78888999998 444444333
No 10
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=8.42 E-value=60 Score=16.36 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=18.0
Q ss_pred eeeCCCccchhhHHhHHHHHHHHHHH
Q 045440 36 LFFGKEGLNLHVVLGMIIAVFGMIWY 61 (98)
Q Consensus 36 ~~fg~~~~t~~~~~G~~i~l~G~~~Y 61 (98)
-++. ..+.+...+|+..+.++.++.
T Consensus 6 ~lWK-gv~Kpl~~~~~~~~~~~~~fH 30 (45)
T d1kqfb2 6 SLWK-GALKPLAAAGFIATFAGLIFH 30 (45)
T ss_dssp HHHH-TTHHHHHHHHHHHHHHHHHHH
T ss_pred HHhh-hhHHHHHHHHHHHHHHHHHHh
Confidence 3455 667788888888888877664
Done!