BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045443
(284 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UMZ|B Chain B, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UN1|A Chain A, Xyloglucan Endotransglycosylase Native Structure.
pdb|1UN1|B Chain B, Xyloglucan Endotransglycosylase Native Structure
Length = 278
Score = 266 bits (679), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 138/253 (54%), Positives = 164/253 (64%), Gaps = 10/253 (3%)
Query: 28 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGT 87
F +++ TW K FNGG + L LD+ +G+GFQSK YLFG MQ+KLV GDSAGT
Sbjct: 17 FGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGT 76
Query: 88 VTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTY 147
VTA+YLSSQ HDEIDFEFLGN +GQPYIL TN+F GKG+REQ+ YLWFDPT+ FH Y
Sbjct: 77 VTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHYY 136
Query: 148 SVIWKPQHITF-----PLECSKMLNLLEFPSLKNQPMKIYSSLWNADDWATRGGLVKTDW 202
SV+W I F P+ K L NQPMKIYSSLWNADDWATRGGL KTDW
Sbjct: 137 SVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEKTDW 196
Query: 203 TKAPFTAYYRNFRAIPCNNCGXXXXXXXXXXDAQRQWQPRD--ELDATSRRRLRWVQKYF 260
+KAPF A YR+F + C R W ++ +LDA RRL WV++ +
Sbjct: 197 SKAPFIASYRSFH---IDGCEASVEAKFCATQGARWWDQKEFQDLDAFQYRRLSWVRQKY 253
Query: 261 MIYNYCTDLKRFP 273
IYNYCTD R+P
Sbjct: 254 TIYNYCTDRSRYP 266
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
pdb|2VH9|B Chain B, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
Length = 290
Score = 161 bits (407), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 89/252 (35%), Positives = 129/252 (51%), Gaps = 20/252 (7%)
Query: 28 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGT 87
F Q + WG + ++ G L++ LD SGSGF+S Y G +KL +G +AG
Sbjct: 43 FDQGYTNLWGPQHQRVDQGS--LTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGV 100
Query: 88 VTAYYLSSQ---GPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNF 144
+T++YLS+ HDEID EFLG + G+PY L TN+F +G G+RE + +LWFDPT+++
Sbjct: 101 ITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDREMRIHLWFDPTQDY 160
Query: 145 HTYSVIWKPQHITF-----PLECSKMLNLLEFPSLKNQPMKIYSSLWNADDWATRGGLVK 199
H Y++ W P I F P+ + FP +P+ +Y S+W+A WAT G K
Sbjct: 161 HNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL---RPLWVYGSVWDASSWATENGKYK 217
Query: 200 TDWTKAPFTAYYRNFRAIPCNNCGXXXXXXXXXXDAQRQWQPRDELDATSRRRLRWVQKY 259
D+ PF Y +F+ C P +L + WVQK
Sbjct: 218 ADYRYQPFVGKYEDFKLGSCTVEAASSCNPASV-------SPYGQLSQQQVAAMEWVQKN 270
Query: 260 FMIYNYCTDLKR 271
+M+YNYC D R
Sbjct: 271 YMVYNYCDDPTR 282
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
pdb|2UWB|B Chain B, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
Length = 267
Score = 161 bits (407), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 89/252 (35%), Positives = 129/252 (51%), Gaps = 20/252 (7%)
Query: 28 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGT 87
F Q + WG + ++ G L++ LD SGSGF+S Y G +KL +G +AG
Sbjct: 20 FDQGYTNLWGPQHQRVDQGS--LTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGV 77
Query: 88 VTAYYLSSQ---GPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNF 144
+T++YLS+ HDEID EFLG + G+PY L TN+F +G G+RE + +LWFDPT+++
Sbjct: 78 ITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDREMRIHLWFDPTQDY 137
Query: 145 HTYSVIWKPQHITF-----PLECSKMLNLLEFPSLKNQPMKIYSSLWNADDWATRGGLVK 199
H Y++ W P I F P+ + FP +P+ +Y S+W+A WAT G K
Sbjct: 138 HNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL---RPLWVYGSVWDASSWATENGKYK 194
Query: 200 TDWTKAPFTAYYRNFRAIPCNNCGXXXXXXXXXXDAQRQWQPRDELDATSRRRLRWVQKY 259
D+ PF Y +F+ C P +L + WVQK
Sbjct: 195 ADYRYQPFVGKYEDFKLGSCTVEAASSCNPASV-------SPYGQLSQQQVAAMEWVQKN 247
Query: 260 FMIYNYCTDLKR 271
+M+YNYC D R
Sbjct: 248 YMVYNYCDDPTR 259
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
pdb|2UWC|B Chain B, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
Length = 271
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 129/257 (50%), Gaps = 25/257 (9%)
Query: 28 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGT 87
F Q + WG + ++ G L++ LD SGSGF+S Y G +KL +G +AG
Sbjct: 19 FDQGYTNLWGPQHQRVDQGS--LTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGV 76
Query: 88 VTAYYLSSQ---GPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGN-----REQQFYLWFD 139
+T++YLS+ HDEID EFLG + G+PY L TN+F +G G+ RE + +LWFD
Sbjct: 77 ITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGRELRIHLWFD 136
Query: 140 PTRNFHTYSVIWKPQHITF-----PLECSKMLNLLEFPSLKNQPMKIYSSLWNADDWATR 194
PT+++H Y++ W P I F P+ + FP +PM +Y S+W+A WAT
Sbjct: 137 PTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL---RPMWVYGSVWDASSWATE 193
Query: 195 GGLVKTDWTKAPFTAYYRNFRAIPCNNCGXXXXXXXXXXDAQRQWQPRDELDATSRRRLR 254
G K D+ PF Y +F+ C P +L +
Sbjct: 194 NGKYKADYRYQPFVGKYEDFKLGSCTVEAASSCNPASV-------SPYGQLSQQQVAAME 246
Query: 255 WVQKYFMIYNYCTDLKR 271
WVQK +M+YNYC D R
Sbjct: 247 WVQKNYMVYNYCDDPTR 263
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|B Chain B, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|C Chain C, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
Length = 274
Score = 155 bits (391), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 129/257 (50%), Gaps = 25/257 (9%)
Query: 28 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGT 87
F Q + WG + ++ G L++ LD SGSGF+S Y G +KL +G +AG
Sbjct: 22 FDQGYTNLWGPQHQRVDQGS--LTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGV 79
Query: 88 VTAYYLSSQ---GPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGN-----REQQFYLWFD 139
+T++YLS+ HDEID EFLG + G+PY L TN+F +G G+ RE + +LWFD
Sbjct: 80 ITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGREMRIHLWFD 139
Query: 140 PTRNFHTYSVIWKPQHITF-----PLECSKMLNLLEFPSLKNQPMKIYSSLWNADDWATR 194
PT+++H Y++ W P I F P+ + FP +P+ +Y S+W+A WAT
Sbjct: 140 PTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL---RPLWVYGSVWDASSWATE 196
Query: 195 GGLVKTDWTKAPFTAYYRNFRAIPCNNCGXXXXXXXXXXDAQRQWQPRDELDATSRRRLR 254
G K D+ PF Y +F+ C P +L +
Sbjct: 197 NGKYKADYRYQPFVGKYEDFKLGSCTVEAASSCNPASV-------SPYGQLSQQQVAAME 249
Query: 255 WVQKYFMIYNYCTDLKR 271
WVQK +M+YNYC D R
Sbjct: 250 WVQKNYMVYNYCDDPTR 266
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
pdb|3D6E|B Chain B, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
Length = 201
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 75/150 (50%), Gaps = 15/150 (10%)
Query: 49 LLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTH----DEID 104
L S S ++ G G QS + Y +G ++ +K + G V+A+Y S+ GPT DEID
Sbjct: 38 LTSPSYNKFDGGGNQSVQTYGYGLYEVNMK--PAKNVGIVSAFYTST-GPTDGTPWDEID 94
Query: 105 FEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHITFPLECSK 164
EFLG + + + N + G GN E+ L FD ++HTY+ W+P I + ++
Sbjct: 95 IEFLGKDTTK---VQFNYYTNGVGNHEKIVNLGFDAANSYHTYAFDWQPNSIKWYVDG-- 149
Query: 165 MLNLLEFPSLKNQPMKIYSSLW---NADDW 191
L + P KIY SLW D+W
Sbjct: 150 QLKHTATTQIPQTPGKIYMSLWAGAGVDEW 179
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus
(1-3,1-4)- Beta-Glucanase
pdb|1GLH|A Chain A, Cation Binding To A Bacillus (1,3-1,4)-Beta-Glucanase.
Geometry, Affinity And Effect On Protein Stability
pdb|2AYH|A Chain A, Crystal And Molecular Structure At 1.6 Angstroms
Resolution Of The Hybrid Bacillus
Endo-1,3-1,4-Beta-D-Glucan 4- Glucanohydrolase H(A16-M)
Length = 214
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 19/171 (11%)
Query: 32 FDLTWGDKRAKIFNGGQL----LSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGT 87
F+ TW N G+L S + ++ + ++S Y +G ++ +K + G
Sbjct: 30 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGI 87
Query: 88 VTAYYLSSQGPTH----DEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRN 143
V++++ + GP H DEID EFLG + + + N + G G E+ L FD ++
Sbjct: 88 VSSFF-TYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKG 143
Query: 144 FHTYSVIWKPQHITFPLECSKMLNLLEFPSLKNQPMKIYSSLWNA---DDW 191
FHTY+ W+P +I + ++ +L ++ + P KI +LWN DDW
Sbjct: 144 FHTYAFDWQPGYIKWYVD--GVLKHTATANIPSTPGKIMMNLWNGTGVDDW 192
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
pdb|1MAC|B Chain B, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
Length = 212
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 19/171 (11%)
Query: 32 FDLTWGDKRAKIFNGGQL----LSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGT 87
F+ TW N G+L S + ++ + ++S Y +G ++ +K + G
Sbjct: 28 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGI 85
Query: 88 VTAYYLSSQGPTH----DEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRN 143
V++++ + GP H DEID EFLG + + + N + G G E+ L FD ++
Sbjct: 86 VSSFF-TYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKG 141
Query: 144 FHTYSVIWKPQHITFPLECSKMLNLLEFPSLKNQPMKIYSSLWNA---DDW 191
FHTY+ W+P +I + ++ +L ++ + P KI +LWN DDW
Sbjct: 142 FHTYAFDWQPGYIKWYVD--GVLKHTATANIPSTPGKIMMNLWNGTGVDDW 190
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|B Chain B, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|C Chain C, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|D Chain D, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
Length = 214
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 19/171 (11%)
Query: 32 FDLTWGDKRAKIFNGGQL----LSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGT 87
F+ TW N G+L S + ++ + ++S Y +G ++ +K + G
Sbjct: 30 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGI 87
Query: 88 VTAYYLSSQGPTH----DEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRN 143
V++++ + GP H D+ID +FLG + + + N + G G E+ L FD ++
Sbjct: 88 VSSFF-TYTGPAHGTQWDQIDIQFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKG 143
Query: 144 FHTYSVIWKPQHITFPLECSKMLNLLEFPSLKNQPMKIYSSLWNA---DDW 191
FHTY+ W+P +I + ++ +L ++ + P KI +LWN DDW
Sbjct: 144 FHTYAFDWQPGYIKWYVD--GVLKHTATANIPSTPGKIMMNLWNGTGVDDW 192
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 214
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 15/137 (10%)
Query: 62 FQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTH----DEIDFEFLGNVSGQPYI 117
++S Y +G ++ +K + G V++++ + GP H DEID EFLG + +
Sbjct: 6 YRSTNIYGYGLYEVSMK--PAKNTGIVSSFF-TYTGPAHGTQWDEIDIEFLGKDTTK--- 59
Query: 118 LHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHITFPLECSKMLNLLEFPSLKNQ 177
+ N + G G E+ L FD ++ FHTY+ W+P +I + ++ +L ++ +
Sbjct: 60 VQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVD--GVLKHTATANIPST 117
Query: 178 PMKIYSSLWNA---DDW 191
P KI +LWN DDW
Sbjct: 118 PGKIMMNLWNGTGVDDW 134
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
pdb|1AXK|B Chain B, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
Length = 394
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 15/137 (10%)
Query: 62 FQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTH----DEIDFEFLGNVSGQPYI 117
++S Y +G ++ +K + G V++++ + GP H DEID EFLG + +
Sbjct: 6 YRSTNIYGYGLYEVSMK--PAKNTGIVSSFF-TYTGPAHGTQWDEIDIEFLGKDTTK--- 59
Query: 118 LHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHITFPLECSKMLNLLEFPSLKNQ 177
+ N + G G E+ L FD ++ FHTY+ W+P +I + ++ +L ++ +
Sbjct: 60 VQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG--VLKHTATANIPST 117
Query: 178 PMKIYSSLWNA---DDW 191
P KI +LWN DDW
Sbjct: 118 PGKIMMNLWNGTGVDDW 134
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 208
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 15/137 (10%)
Query: 62 FQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTH----DEIDFEFLGNVSGQPYI 117
++S Y +G ++ +K + G V++++ + GP H DEID EFLG + +
Sbjct: 6 YRSTNIYGYGLYEVSMK--PAKNTGIVSSFF-TYTGPAHGTQWDEIDIEFLGKDTTK--- 59
Query: 118 LHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHITFPLECSKMLNLLEFPSLKNQ 177
+ N + G G E+ L FD ++ FHTY+ W+P +I + ++ +L ++ +
Sbjct: 60 VQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVD--GVLKHTATANIPST 117
Query: 178 PMKIYSSLWNA---DDW 191
P KI +LWN DDW
Sbjct: 118 PGKIMMNLWNGTGVDDW 134
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
pdb|1AJK|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
Length = 214
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 12/111 (10%)
Query: 88 VTAYYLSSQGPTH----DEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRN 143
+ + + + GP H DEID EFLG + + + N + G G E+ L FD ++
Sbjct: 4 IVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKG 60
Query: 144 FHTYSVIWKPQHITFPLECSKMLNLLEFPSLKNQPMKIYSSLWNA---DDW 191
FHTY+ W+P +I + ++ +L ++ + P KI +LWN DDW
Sbjct: 61 FHTYAFDWQPGYIKWYVD--GVLKHTATANIPSTPGKIMMNLWNGTGVDDW 109
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase
Length = 214
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 80/171 (46%), Gaps = 19/171 (11%)
Query: 32 FDLTWGDKRAKIFNGGQ----LLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGT 87
F+ TW + + G+ L S S ++ +S + Y +G ++ +K + G
Sbjct: 30 FNCTWRANNVSMTSLGEMRLSLTSPSYNKFDCGENRSVQTYGYGLYEVNMK--PAKNVGI 87
Query: 88 VTAYYLSSQGPTH----DEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRN 143
V++++ + GPT DEID EFLG + + + N + G GN E+ L FD +
Sbjct: 88 VSSFFTYT-GPTDGTPWDEIDIEFLGKDTTK---VQFNYYTNGVGNHEKIVNLGFDAANS 143
Query: 144 FHTYSVIWKPQHITFPLECSKMLNLLEFPSLKNQPMKIYSSLWNA---DDW 191
+HTY+ W+P I + ++ L + P KI +LWN D+W
Sbjct: 144 YHTYAFDWQPNSIKWYVD--GQLKHTATTQIPQTPGKIMMNLWNGAGVDEW 192
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
Length = 234
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 81/171 (47%), Gaps = 17/171 (9%)
Query: 32 FDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYL----FGRIDMQLKLVAGDSAGT 87
F+ W ++ +G LS++ D S S + +Y FG Q+++ + G
Sbjct: 48 FNCIWRAYNIELKDGILNLSITDDMPSSSKPYAGAEYRTRDKFGYGLYQVRMKPAKNPGI 107
Query: 88 VTAYYLSSQGPTH----DEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRN 143
V++++ + GP H DEID EFLG + + + N + GN E + L FD + +
Sbjct: 108 VSSFF-TYTGPVHGTPWDEIDIEFLGKDTTK---VQFNYYTNSAGNHEYIYDLRFDASED 163
Query: 144 FHTYSVIWKPQHITFPLECSKMLNLLEFPSLKNQPMKIYSSLW---NADDW 191
FH Y+ W+P +I + ++ ++ + + P KI ++W D+W
Sbjct: 164 FHIYAFNWQPNYIAWLVDGEEVYR--AYDDIPVHPGKIMLNIWPGIGVDEW 212
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From
Bacillus Subtilis (Strain 168)
Length = 238
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 19/171 (11%)
Query: 32 FDLTWGDKRAKIFNGGQ----LLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGT 87
F+ TW + + G+ L S + ++ +S + Y +G ++++K + G
Sbjct: 54 FNCTWRANNVSMTSLGEMRLALTSPAYNKFDCGENRSVQTYGYGLYEVRMK--PAKNTGI 111
Query: 88 VTAYYLSSQGPTH----DEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRN 143
V++++ + GPT DEID EFLG + + + N + G GN E+ L FD
Sbjct: 112 VSSFF-TYTGPTDGTPWDEIDIEFLGKDTTK---VQFNYYTNGAGNHEKIVDLGFDAANA 167
Query: 144 FHTYSVIWKPQHITFPLECSKMLNLLEFPSLKNQPMKIYSSLWNA---DDW 191
+HTY+ W+P I + ++ L + P KI +LWN D+W
Sbjct: 168 YHTYAFDWQPNSIKWYVD--GQLKHTATNQIPTTPGKIMMNLWNGTGVDEW 216
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
pdb|1AJO|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
Length = 214
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 128 GNREQQFYLWFDPTRNFHTYSVIWKPQHITFPLECSKMLNLLEFPSLKNQPMKIYSSLWN 187
G E+ L FD ++ FHTY+ W+P +I + ++ +L ++ + P KI +LWN
Sbjct: 2 GGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVD--GVLKHTATANIPSTPGKIMMNLWN 59
Query: 188 A---DDW 191
DDW
Sbjct: 60 GTGVDDW 66
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 11/86 (12%)
Query: 32 FDLTWGDKRAKIFNGGQL----LSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGT 87
F+ TW N G+L S + ++ + ++S Y +G ++ +K + G
Sbjct: 118 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGI 175
Query: 88 VTAYYLSSQGPTH----DEIDFEFLG 109
V++++ + GP H DEID EFLG
Sbjct: 176 VSSFF-TYTGPAHGTQWDEIDIEFLG 200
>pdb|3AXD|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXD|B Chain B, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXE|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN COMPLEX WITH
CELLOTETRAOSE (CELLOBIOSE DENSITY WAS Observed)
Length = 249
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 14/123 (11%)
Query: 52 LSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTHD------EIDF 105
+S+ SG+ + +Y +G+ + ++K+ A ++GTV++ +L G E+D
Sbjct: 2 VSMKDFSGAELYTLEEYQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDI 59
Query: 106 EFLGNVSGQPYILHTNIFAQGKGNR---EQQFYLWFDPTRNFHTYSVIWKPQHITFPLEC 162
E LG P +NI G + E+ + + FHTY + W P ++ + ++
Sbjct: 60 EVLGK---SPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDG 116
Query: 163 SKM 165
++
Sbjct: 117 QEV 119
>pdb|3H0O|A Chain A, The Importance Of Ch-Pi Stacking Interactions Between
Carbohydrate And Aromatic Residues In Truncated
Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase
Length = 240
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 27/134 (20%)
Query: 41 AKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTH 100
AK F+G +L +L + +G+ + ++K+ A ++GTV++ +L G
Sbjct: 1 AKDFSGAELYTL-------------EEVQYGKFEARMKMAA--ASGTVSSMFLYQNGSEI 45
Query: 101 D------EIDFEFLGNVSGQPYILHTNIFAQGKGNR---EQQFYLWFDPTRNFHTYSVIW 151
E+D E LG P +NI G + E+ + + FHTY + W
Sbjct: 46 ADGRPWVEVDIEVLGK---NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEW 102
Query: 152 KPQHITFPLECSKM 165
P ++ + ++ ++
Sbjct: 103 TPNYVRWTVDGQEV 116
>pdb|2R49|A Chain A, Mutational And Structural Studies Of E85i Reveal The
Flexible Loops Of Fibrobacter Succinogenes
1,3-1,4-beta-d- Glucanaseglucanase
Length = 241
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 27/134 (20%)
Query: 41 AKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTH 100
AK F+G +L +L + +G+ + ++K+ A ++GTV++ +L G
Sbjct: 2 AKDFSGAELYTL-------------EEVQYGKFEARMKMAA--ASGTVSSMFLYQNGSEI 46
Query: 101 D------EIDFEFLGNVSGQPYILHTNIFAQGKGNREQQF-YLWFDPTRN--FHTYSVIW 151
E+D E LG P +NI G ++ + P + FHTY + W
Sbjct: 47 ADGRPWVEVDIEVLGK---NPGSFQSNIITGKAGAQKTSIKHHAVSPAADQAFHTYGLEW 103
Query: 152 KPQHITFPLECSKM 165
P ++ + ++ ++
Sbjct: 104 TPNYVRWTVDGQEV 117
>pdb|3HR9|A Chain A, The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-
Glucanase F40i Mutant
Length = 241
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 27/134 (20%)
Query: 41 AKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTH 100
AK F+G +L +L + +G+ + ++K+ A ++GTV++ L G
Sbjct: 2 AKDFSGAELYTL-------------EEVQYGKFEARMKMAA--ASGTVSSMILYQNGSEI 46
Query: 101 D------EIDFEFLGNVSGQPYILHTNIFAQGKGNR---EQQFYLWFDPTRNFHTYSVIW 151
E+D E LG P +NI G + E+ + + FHTY + W
Sbjct: 47 ADGRPWVEVDIEVLGK---NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEW 103
Query: 152 KPQHITFPLECSKM 165
P ++ + ++ ++
Sbjct: 104 TPNYVRWTVDGQEV 117
>pdb|2HYK|A Chain A, The Crystal Structure Of An Endo-Beta-1,3-Glucanase From
Alkaliphilic Nocardiopsis Sp.Strain F96
Length = 245
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 63 QSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSS----QGPTHDEIDFEFLGNVSGQPYIL 118
Q+K +GR++ +++ G G A+++ P D + + + N+ +P+++
Sbjct: 80 QNKVQPQYGRVEASIQIPRGQ--GIWPAFWMLGADFPNTPWPDSGEIDIMENIGREPHLV 137
Query: 119 HTNIFAQGKGNREQQFYLWFDP-----TRNFHTYSVIWKPQHITFPLE 161
H ++ G E + P FHT++V W+P IT+ ++
Sbjct: 138 HGSLHGPGYFGGEPLTGSYMHPQGWSFADTFHTFAVDWRPGSITWSVD 185
>pdb|1MVE|A Chain A, Crystal Structure Of A Natural Circularly-Permutated
Jellyroll Protein: 1,3-1,4-Beta-D-Glucanase From
Fibrobacter Succinogenes
Length = 243
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 14/123 (11%)
Query: 52 LSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTHD------EIDF 105
+S SG+ + + +G+ + + K A ++GTV++ +L G E+D
Sbjct: 2 VSAKDFSGAELYTLEEVQYGKFEARXKXAA--ASGTVSSXFLYQNGSEIADGRPWVEVDI 59
Query: 106 EFLGNVSGQPYILHTNIFAQGKGNR---EQQFYLWFDPTRNFHTYSVIWKPQHITFPLEC 162
E LG P +NI G + E+ + + FHTY + W P ++ + ++
Sbjct: 60 EVLGK---NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDG 116
Query: 163 SKM 165
++
Sbjct: 117 QEV 119
>pdb|3ATG|A Chain A, Endo-1,3-Beta-Glucanase From Cellulosimicrobium Cellulans
Length = 256
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 15/107 (14%)
Query: 63 QSKRDYLFGRIDMQLKLVAGDSAGTVTAYYL------SSQGPTHDEIDFEFLGNVSGQPY 116
Q K +GRI+ ++++ G G A+++ + P+ EID + NV +P+
Sbjct: 76 QGKYQPQYGRIEARIQIPRGQ--GIWPAFWMLGGSFPGTPWPSSGEIDI--MENVGFEPH 131
Query: 117 ILHTNIFAQGKGNREQQFYLWFDP-----TRNFHTYSVIWKPQHITF 158
+H + G ++ P FHT++V WKP IT+
Sbjct: 132 RVHGTVHGPGYSGGSGITGMYQHPQGWSFADTFHTFAVDWKPGEITW 178
>pdb|1ZM1|A Chain A, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
pdb|1ZM1|B Chain B, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
Length = 241
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 27/134 (20%)
Query: 41 AKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTH 100
AK F+G +L +L + +G+ + + K A ++GTV++ +L G
Sbjct: 1 AKDFSGAELYTL-------------EEVQYGKFEARXKXAA--ASGTVSSXFLYQNGSEI 45
Query: 101 D------EIDFEFLGNVSGQPYILHTNIFAQGKGNR---EQQFYLWFDPTRNFHTYSVIW 151
E+D E LG P +NI G + E+ + + FHTY + W
Sbjct: 46 ADGRPWVEVDIEVLGK---NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEW 102
Query: 152 KPQHITFPLECSKM 165
P ++ + ++ ++
Sbjct: 103 TPNYVRWTVDGQEV 116
>pdb|3ILN|A Chain A, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
pdb|3ILN|B Chain B, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
Length = 251
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 33/164 (20%)
Query: 31 DFDLT---WGDK------RAKIFN---GGQLLSLSLDRVSGSGFQ---------SKRDYL 69
D+D+ WG++ RA+I N GG +L + R S G + K +
Sbjct: 25 DYDVGGHGWGNQELQYYTRARIENARVGGGVLIIEARRESYEGREYTSARLVTRGKASWT 84
Query: 70 FGRIDMQLKLVAGDSAGTVTAYYL--------SSQGPTHDEIDF-EFLG-NVSGQPYILH 119
+GR +++ +L +G GT A ++ S+ P + EID E +G N +H
Sbjct: 85 YGRFEIRARLPSG--RGTWPAIWMLPDRQTYGSAYWPDNGEIDIAEHVGFNPDVVHGTVH 142
Query: 120 TNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHITFPLECS 163
T + G + +FH Y++ W P+ I + ++ S
Sbjct: 143 TKAYNHLLGTQRGGSIRVPTARTDFHVYAIEWTPEEIRWFVDDS 186
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,382,046
Number of Sequences: 62578
Number of extensions: 324656
Number of successful extensions: 566
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 520
Number of HSP's gapped (non-prelim): 27
length of query: 284
length of database: 14,973,337
effective HSP length: 98
effective length of query: 186
effective length of database: 8,840,693
effective search space: 1644368898
effective search space used: 1644368898
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)