Query 045443
Match_columns 284
No_of_seqs 261 out of 1400
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 13:15:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045443.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045443hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03161 Probable xyloglucan e 100.0 4.3E-82 9.4E-87 584.6 33.0 271 9-282 4-288 (291)
2 cd02176 GH16_XET Xyloglucan en 100.0 1.2E-79 2.6E-84 563.8 31.4 253 24-280 2-263 (263)
3 cd02183 GH16_fungal_CRH1_trans 100.0 1.1E-41 2.4E-46 302.7 24.2 169 36-218 14-201 (203)
4 cd02175 GH16_lichenase lichena 100.0 1.1E-34 2.3E-39 258.3 24.1 172 32-217 25-211 (212)
5 PF00722 Glyco_hydro_16: Glyco 100.0 1E-32 2.2E-37 238.4 17.0 162 30-197 3-178 (185)
6 cd00413 Glyco_hydrolase_16 gly 100.0 6.1E-30 1.3E-34 224.9 22.5 169 33-216 24-209 (210)
7 cd08023 GH16_laminarinase_like 100.0 1.2E-28 2.6E-33 221.6 21.1 172 34-216 33-234 (235)
8 cd02178 GH16_beta_agarase Beta 100.0 1.6E-28 3.4E-33 224.9 20.7 173 37-217 56-257 (258)
9 cd02177 GH16_kappa_carrageenas 99.9 5.1E-26 1.1E-30 210.1 20.5 168 38-217 43-268 (269)
10 cd02182 GH16_Strep_laminarinas 99.9 1E-24 2.3E-29 199.8 18.2 176 35-217 42-258 (259)
11 cd02180 GH16_fungal_KRE6_gluca 99.9 1.7E-24 3.6E-29 202.3 17.9 176 35-217 37-294 (295)
12 cd08024 GH16_CCF Coelomic cyto 99.9 1.5E-23 3.3E-28 198.8 17.9 132 59-192 101-279 (330)
13 cd02179 GH16_beta_GRP beta-1,3 99.9 3.3E-23 7.1E-28 195.8 16.7 129 59-189 98-268 (321)
14 COG2273 SKN1 Beta-glucanase/Be 99.9 1.5E-22 3.3E-27 193.3 18.2 170 34-214 74-262 (355)
15 PF06955 XET_C: Xyloglucan end 99.8 4.7E-20 1E-24 129.8 3.9 45 236-280 5-51 (51)
16 cd02181 GH16_fungal_Lam16A_glu 99.4 4.7E-12 1E-16 118.1 11.3 144 40-192 43-251 (293)
17 PF03935 SKN1: Beta-glucan syn 99.2 1.2E-10 2.5E-15 115.4 13.9 171 38-217 160-452 (504)
18 PF10287 DUF2401: Putative TOS 79.4 6.2 0.00013 36.2 6.5 79 73-154 103-207 (235)
19 PF13670 PepSY_2: Peptidase pr 40.3 1.5E+02 0.0032 22.0 6.7 22 43-64 61-82 (83)
20 PF07172 GRP: Glycine rich pro 29.1 35 0.00076 26.9 1.6 8 7-14 6-13 (95)
21 PRK15221 Saf-pilin pilus forma 26.4 1.1E+02 0.0024 26.7 4.2 48 10-59 7-54 (165)
No 1
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=100.00 E-value=4.3e-82 Score=584.61 Aligned_cols=271 Identities=46% Similarity=0.821 Sum_probs=242.5
Q ss_pred hHHHHHHHHHHHh----hccccccccCceeeecCCCeEEecCCcEEEEEEeCCCCCeEEEcceeEEEEEEEEEEeeCCCC
Q 045443 9 GLLLLVSVLMVVA----SSAVGSFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDS 84 (284)
Q Consensus 9 ~~~~~~~~~~~~~----~~~~~~f~~~f~~~w~~~nv~~~~~G~~l~L~ld~~~g~~i~Sk~~~~YG~~e~riKlp~g~s 84 (284)
+|.||+.|+++.+ .-...+|.++|.+.|+.+|+.+.++|.+|+|+||+.+|++|+||++|+||+||||||||+|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~w~~~~~~~~~~g~~l~L~ld~~sgs~~~Sk~~f~yGr~E~riKLp~G~s 83 (291)
T PLN03161 4 LKTLLVALFAALAAFDRSFVEADFSKSMYFTWGADHSSMLGNGDNLQLVLDQSSGSGIKSKRAFLFGSIEMLIKLVPGNS 83 (291)
T ss_pred HHHHHHHHHHHHHhcCCCcccccccccceeeEcCCcEEEeCCCCEEEEEEeCCccCcEEecceEEEEEEEEEEEeCCCCC
Confidence 4556665554433 224678999999999999999988888899999999999999999999999999999999888
Q ss_pred CceEeeeeeeecCCCCCeEEEEEcCCCCCCCeEEEeeEEeCCCCCeeeeEeccCCCCCCcEEEEEEEeCCeEEE-----E
Q 045443 85 AGTVTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHITF-----P 159 (284)
Q Consensus 85 ~G~v~Af~l~s~~~~~dEIDiE~lG~~~g~p~~vqtN~~~~G~~~~e~~~~l~fdp~~dFHtY~i~Wtp~~I~f-----~ 159 (284)
+|+||||||++.++.+|||||||||+++++++++|||+|.+|.++++++++++|||+++||+|+|+|+|++|+| +
T Consensus 84 aG~v~AFwl~s~~~~~dEIDiEfLG~~~g~~~~vqtN~y~~g~g~re~~~~l~fDpt~dFHtYsI~Wtp~~I~wyVDG~~ 163 (291)
T PLN03161 84 AGTVTAYYLSSTGSRHDEIDFEFLGNVSGQPYTIHTNIYTQGNGSREQQFRPWFDPTADFHNYTIHWNPSEVVWYVDGTP 163 (291)
T ss_pred CCeEEEEEecCCCCCCCeEEEEecCCCCCCceEEEeceEeCCcCCcceeccccCCCccCcEEEEEEEchhhEEEEECCEE
Confidence 99999999999777899999999999989999999999999999999999999999999999999999999999 8
Q ss_pred cEEEEeccccCCCCCCCCCcEEEEeeecCCCccCCCCcccccCCCCCEEEEEeEEEEeeccCCCCCCC--CCcccCCCCC
Q 045443 160 LECSKMLNLLEFPSLKNQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRS--SSSSVSDAQR 237 (284)
Q Consensus 160 ir~~~~~~~~g~~~P~~~Pm~l~lnlW~ggdWat~GG~~k~d~~~~Pf~a~~~~~~v~~c~~~~~~~~--~~~c~~~~~~ 237 (284)
||++++.+..+.+||+++||+|++|||+|++|||+||++||||+++||+|.|++|++++| .+..+ ...|..+++.
T Consensus 164 iRt~~~~~~~g~~yP~~~pM~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C---~~~~~~~~~~c~~~~~~ 240 (291)
T PLN03161 164 IRVFRNYENEGIAYPNKQGMRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARAC---KWNGPVSIKQCADPTPS 240 (291)
T ss_pred EEEEEcccccCCcCCCccceEEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEee---ccCCCCCccccCCCCcc
Confidence 899998777788999878999999999999999999999999999999999999999999 54432 2468754234
Q ss_pred CCCCC---ccCCHHHHHHHHHHhhcCeEEccccCCCCCCCCCCCCccC
Q 045443 238 QWQPR---DELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFLLSADN 282 (284)
Q Consensus 238 ~w~~~---~~l~~~~~~~~~~vr~~~m~YdYC~D~~R~p~~~p~EC~~ 282 (284)
.||.. ++|+.+|+++|+|||+||||||||+|++|||.++||||..
T Consensus 241 ~~~~~~~~~~l~~~~~~~~~~v~~~~m~Y~YC~D~~R~~~~~p~EC~~ 288 (291)
T PLN03161 241 NWWTSPSYSQLTNAQLTQMKKVRDNFMIYDYCKDTKRFNGVMPPECFK 288 (291)
T ss_pred ccccCccccCCCHHHHHHHHHHHhCcEEEeccCCCCcCCCCcCcccCC
Confidence 56653 4799999999999999999999999999999878999975
No 2
>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling.
Probab=100.00 E-value=1.2e-79 Score=563.81 Aligned_cols=253 Identities=50% Similarity=0.953 Sum_probs=233.0
Q ss_pred cccccccCceeeecCCCeEEecCCcEEEEEEeCCCCCeEEEcceeEEEEEEEEEEeeCCCCCceEeeeeeeecC-CCCCe
Q 045443 24 AVGSFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQG-PTHDE 102 (284)
Q Consensus 24 ~~~~f~~~f~~~w~~~nv~~~~~G~~l~L~ld~~~g~~i~Sk~~~~YG~~e~riKlp~g~s~G~v~Af~l~s~~-~~~dE 102 (284)
.+++|.++|.++|+++|+++.++|++|+|+||+.+|++|+||++|+||+||||||||+|+++|+||||||++++ |.+||
T Consensus 2 ~~~~f~~~~~~~w~~~~~~~~~~g~~~~L~ld~~s~~~i~Sk~~f~YG~~E~riKlp~g~s~G~~pAFwl~~~~wp~~~E 81 (263)
T cd02176 2 VAASFDENFFVTWGPDHIRVSNDGTSVQLTLDQSSGSGFKSKNKYLFGFFSMRIKLPPGDSAGTVTAFYLSSQGPDNHDE 81 (263)
T ss_pred CcCCccccceeeEcCCcEEEeCCCCEEEEEEcCCCCccEEEccEEEEEEEEEEEEeCCCCCCCeEEEEEECCCCCCCCCe
Confidence 35689999999999999999988889999999999999999999999999999999998889999999999987 78999
Q ss_pred EEEEEcCCCCCCCeEEEeeEEeCCCCCeeeeEeccCCCCCCcEEEEEEEeCCeEEE-----EcEEEEeccccCCCCCCCC
Q 045443 103 IDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHITF-----PLECSKMLNLLEFPSLKNQ 177 (284)
Q Consensus 103 IDiE~lG~~~g~p~~vqtN~~~~G~~~~e~~~~l~fdp~~dFHtY~i~Wtp~~I~f-----~ir~~~~~~~~g~~~P~~~ 177 (284)
||||+||+.+|+|+++|||+|.+|.++++++++++|||+++||+|+|+|+|++|+| +||++++.+..+.+||+++
T Consensus 82 ID~E~lGn~~g~~~~~qtnv~~~g~g~r~~~~~l~fdpt~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~ 161 (263)
T cd02176 82 IDFEFLGNVTGQPYTLQTNVFANGVGGREQRIYLWFDPTADFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYPSSQ 161 (263)
T ss_pred EEEEEecccCCCceEEEEEEeCCCCCCCceeeecCCCCCCCeEEEEEEEccceEEEEECCEEEEEEecccccCCCCCccc
Confidence 99999999989999999999999999999999999999999999999999999999 7899998877788999889
Q ss_pred CcEEEEeeecCCCccCCCCcccccCCCCCEEEEEeEEEEeeccCCCCCCCCCcccCCCCCCCCCC---ccCCHHHHHHHH
Q 045443 178 PMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRSSSSSVSDAQRQWQPR---DELDATSRRRLR 254 (284)
Q Consensus 178 Pm~l~lnlW~ggdWat~GG~~k~d~~~~Pf~a~~~~~~v~~c~~~~~~~~~~~c~~~~~~~w~~~---~~l~~~~~~~~~ 254 (284)
||+|++|||+||+|||+||++|+||+++||+|+|++|+|.+| .++++...|.......|++. ++|+.+|+++|+
T Consensus 162 Pm~l~~niW~g~~WAt~gG~~~~d~~~aPf~a~~~~~~~~~c---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 238 (263)
T cd02176 162 PMGVYASIWDGSDWATQGGRVKIDWSYAPFVASYRDFKLDGC---VVDPGDSFSSCSCTEDWWNGSTYQQLSANQQRAME 238 (263)
T ss_pred eEEEEEeeEcCCCcccCCCcccccCCCCCeeEEEeeEEEeee---ecCCCCccccCCCccccccccccccCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999 55544455654322456553 579999999999
Q ss_pred HHhhcCeEEccccCCCCCCCCCCCCc
Q 045443 255 WVQKYFMIYNYCTDLKRFPQGFLLSA 280 (284)
Q Consensus 255 ~vr~~~m~YdYC~D~~R~p~~~p~EC 280 (284)
|||+||||||||+|++|||. +||||
T Consensus 239 ~~~~~~~~y~yC~d~~r~~~-~p~ec 263 (263)
T cd02176 239 WVRRNYMVYDYCDDRKRYPV-PPPEC 263 (263)
T ss_pred HHHHCCEEEecCCCCCcCCC-CcCCC
Confidence 99999999999999999995 89999
No 3
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase. Group of fungal GH16 members related to Saccharomyces cerevisiae Crh1p. Chr1p and Crh2p are transglycosylases that are required for the linkage of chitin to beta(1-3)glucose branches of beta(1-6)glucan, an important step in the assembly of new cell wall. Both have been shown to be glycosylphosphatidylinositol (GPI)-anchored. A third homologous protein, Crr1p, functions in the formation of the spore wall. They belongs to the family 16 of glycosyl hydrolases that includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=1.1e-41 Score=302.69 Aligned_cols=169 Identities=27% Similarity=0.506 Sum_probs=146.7
Q ss_pred ecCCCeEEecCCcEEEEEEeCC-CCCeEEEcceeEEEEEEEEEEeeCCCCCceEeeeeeeecCCCCCeEEEEEcCCCCCC
Q 045443 36 WGDKRAKIFNGGQLLSLSLDRV-SGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGQ 114 (284)
Q Consensus 36 w~~~nv~~~~~G~~l~L~ld~~-~g~~i~Sk~~~~YG~~e~riKlp~g~s~G~v~Af~l~s~~~~~dEIDiE~lG~~~g~ 114 (284)
...++|.+.. .+|+|+|++. ++++|+|+++|+|||||||||+|.+ +|+||||||+++ .++|||||++|+ +
T Consensus 14 ~~~~~~~~~~--~~~~l~~~~~~~~~~i~s~~~f~YG~~EaR~Klp~g--~G~wpAfWl~~~--~~gEIDIE~~G~---~ 84 (203)
T cd02183 14 VTSGTVDYDD--DGASLTIPKRGDGPTISSTFYIFYGKVEVTMKAAPG--QGIVSSFVLQSD--DLDEIDWEWVGG---D 84 (203)
T ss_pred ecCCcEeECC--CeEEEEEcCCCCCCeEEeccEEEeEEEEEEEEecCC--CeEEEEEEEECC--CCCEEEEEecCC---C
Confidence 3577888864 3599999876 7999999999999999999999998 899999999998 689999999996 5
Q ss_pred CeEEEeeEEeCCCC---CeeeeEeccCCCCCCcEEEEEEEeCCeEEE-----EcEEEEeccc-cCCCCCCCCCcEEEEee
Q 045443 115 PYILHTNIFAQGKG---NREQQFYLWFDPTRNFHTYSVIWKPQHITF-----PLECSKMLNL-LEFPSLKNQPMKIYSSL 185 (284)
Q Consensus 115 p~~vqtN~~~~G~~---~~e~~~~l~fdp~~dFHtY~i~Wtp~~I~f-----~ir~~~~~~~-~g~~~P~~~Pm~l~lnl 185 (284)
+..+|+|++.+|.. ++++.+.+.++++++||+|+|+|+|++|+| ++|++.+.+. .+..||. +||+|++|+
T Consensus 85 ~~~~~tn~~~~g~~~~~~~~~~~~~~~~~~~dFHtY~veWtpd~I~~yVDG~~v~~~~~~~~~~~~~~p~-~P~~l~ln~ 163 (203)
T cd02183 85 LTQVQTNYFGKGNTTTYDRGGYHPVPNPQTEEFHTYTIDWTKDRITWYIDGKVVRTLTKADTTGGYGYPQ-TPMRLQIGI 163 (203)
T ss_pred CCEEEeEEECCCCCCCCCCceEeeCCCCCCcCcEEEEEEEecCEEEEEECCEEEEEEehhhcccCCCCCC-CCcEEEEEE
Confidence 67899999987754 355667888999999999999999999999 5677765432 3567995 999999999
Q ss_pred ecCCC---------ccCCCCcccccCCCCCEEEEEeEEEEee
Q 045443 186 WNADD---------WATRGGLVKTDWTKAPFTAYYRNFRAIP 218 (284)
Q Consensus 186 W~ggd---------Wat~GG~~k~d~~~~Pf~a~~~~~~v~~ 218 (284)
|+||+ || ||+ +||+.+||+|.|++|+|+.
T Consensus 164 W~gg~~~~~~g~~~Wa--Gg~--~d~~~~P~~~~vd~v~v~~ 201 (203)
T cd02183 164 WAGGDPSNAPGTIEWA--GGE--TDYDKGPFTMYVKSVTVTD 201 (203)
T ss_pred ecCCCccccCCcccCC--CCc--cCCCCCCEEEEEEEEEEEe
Confidence 99985 99 886 8999999999999999984
No 4
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=100.00 E-value=1.1e-34 Score=258.28 Aligned_cols=172 Identities=30% Similarity=0.560 Sum_probs=140.0
Q ss_pred ceeeecCCCeEEecCCcEEEEEEeCC-------CCCeEEEcceeEEEEEEEEEEeeCCCCCceEeeeeeeecC---CCCC
Q 045443 32 FDLTWGDKRAKIFNGGQLLSLSLDRV-------SGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQG---PTHD 101 (284)
Q Consensus 32 f~~~w~~~nv~~~~~G~~l~L~ld~~-------~g~~i~Sk~~~~YG~~e~riKlp~g~s~G~v~Af~l~s~~---~~~d 101 (284)
...+|.++||.+.+ |. |+|++.+. .+++|.|+.+|+||+||+|||+|.+ +|+|+||||+++. +.++
T Consensus 25 ~~~~~~~~nv~v~~-g~-L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~--~G~~~Afwl~~~~~~~~~~~ 100 (212)
T cd02175 25 FNCTWSADNVEFSD-GG-LALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG--SGVVSSFFTYTGPYDGDPHD 100 (212)
T ss_pred EeeeEccccEEEEC-Ce-EEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC--CeEEEEEEEEecCCCCCCCC
Confidence 34578899999984 54 99998543 3789999999999999999999987 8999999999742 4679
Q ss_pred eEEEEEcCCCCCCCeEEEeeEEeCCCCCeeeeEeccCCCCCCcEEEEEEEeCCeEEEEc--EEEEeccccCCCCCCCCCc
Q 045443 102 EIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHITFPL--ECSKMLNLLEFPSLKNQPM 179 (284)
Q Consensus 102 EIDiE~lG~~~g~p~~vqtN~~~~G~~~~e~~~~l~fdp~~dFHtY~i~Wtp~~I~f~i--r~~~~~~~~g~~~P~~~Pm 179 (284)
|||||++|++ +..+++|+|.++.++.+..+.+.+|++++||+|+|+|+|++|+|.| +.+.+.+.....+|. +||
T Consensus 101 EIDiE~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~v~W~~~~i~~yvDg~~v~~~~~~~~~~p~-~p~ 176 (212)
T cd02175 101 EIDIEFLGKD---TTKVQFNYYTNGVGGHEKLIDLGFDASEGFHTYAFEWEPDSIRWYVDGELVHEATATDPNIPD-TPG 176 (212)
T ss_pred EEEEEEccCC---CCEeEEEEECCCCCCCceEEeCCCCcccccEEEEEEEeCCEEEEEECCEEEEEEcCccCCCCC-CCc
Confidence 9999999974 4578999998877766667788899999999999999999999922 222222211146785 999
Q ss_pred EEEEeeecCC---CccCCCCcccccCCCCCEEEEEeEEEEe
Q 045443 180 KIYSSLWNAD---DWATRGGLVKTDWTKAPFTAYYRNFRAI 217 (284)
Q Consensus 180 ~l~lnlW~gg---dWat~GG~~k~d~~~~Pf~a~~~~~~v~ 217 (284)
+|++|+|.++ +|+ |. +|. .+|++|+|++|+|.
T Consensus 177 ~i~~n~w~~~~~~~W~---G~--~~~-~~p~~~~vd~vr~~ 211 (212)
T cd02175 177 KIMMNLWPGDGVDDWL---GP--FDG-GTPLTAEYDWVSYT 211 (212)
T ss_pred EEEEEEEcCCCCCCcC---Cc--CCC-CCCeEEEEEEEEEe
Confidence 9999999985 599 54 566 89999999999986
No 5
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=100.00 E-value=1e-32 Score=238.41 Aligned_cols=162 Identities=32% Similarity=0.616 Sum_probs=135.5
Q ss_pred cCceeeecCCCeEEecCCcEEEEEEeC-----CCCCeEEEcceeEEEEEEEEEEeeCCCCCceEeeeeeeec--CCCCCe
Q 045443 30 QDFDLTWGDKRAKIFNGGQLLSLSLDR-----VSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQ--GPTHDE 102 (284)
Q Consensus 30 ~~f~~~w~~~nv~~~~~G~~l~L~ld~-----~~g~~i~Sk~~~~YG~~e~riKlp~g~s~G~v~Af~l~s~--~~~~dE 102 (284)
+.+.++|.++||++.++ ..|.|++++ .++++|+|+..++||+||+|||++.+ .|+|+||||.+. .+.++|
T Consensus 3 ~~~~~~~~~~nv~~~~g-~~L~L~~~~~~~~~~~sg~i~s~~~~~yG~~ear~k~~~~--~G~~~afwl~~~~~~~~~~E 79 (185)
T PF00722_consen 3 DQYNCTWSPDNVTVEDG-GNLVLRADKEPGKPYTSGEIQSKFSFKYGRFEARIKAPPG--PGVWPAFWLTGADGWPDGGE 79 (185)
T ss_dssp CTEEEEETCCGEEEETT-SEEEEEEEEEETEEEEEEEEEESSEBSSEEEEEEEECSCS--TTEEEEEEEETTGSTTTTEE
T ss_pred CceEEeeCCCcEEEcCC-CEEEEEEEecccCceEeCEEEEcceeECcEEEEEEEecCC--CceEecccccccccccchhh
Confidence 56889999999999864 459999977 57899999999999999999999877 899999999753 278999
Q ss_pred EEEEEcCCCCCCCeEEEeeEEeCCCCCe--eeeEeccCCCCCCcEEEEEEEeCCeEEE-----EcEEEEeccccCCCCCC
Q 045443 103 IDFEFLGNVSGQPYILHTNIFAQGKGNR--EQQFYLWFDPTRNFHTYSVIWKPQHITF-----PLECSKMLNLLEFPSLK 175 (284)
Q Consensus 103 IDiE~lG~~~g~p~~vqtN~~~~G~~~~--e~~~~l~fdp~~dFHtY~i~Wtp~~I~f-----~ir~~~~~~~~g~~~P~ 175 (284)
||||++|+. +..+++|+|..+.+.. +.++.+.+++..+||+|+|+|+|++|+| .++++......+.+||.
T Consensus 80 IDiE~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~y~~~W~~~~i~fyiDg~~~~~~~~~~~~~~~~P~ 156 (185)
T PF00722_consen 80 IDIEFLGND---PTQVQTNVHWNGDGDSNWEKRVPLGFDPSTDFHTYGFEWTPDRIRFYIDGKLVRTVTNSDVPGSPYPF 156 (185)
T ss_dssp EEEEEETTS---TTEEEEEEEBTTBSCEEEEEEEETSSTTTTSEEEEEEEEETTEEEEEETTEEEEEEESSGSTTTCSSE
T ss_pred hhhhhcccc---ccceeeeeeecccCCcccceeeccccCcCCCcEEEEEEEecCeEEEEECCEEEEEEeccccccccCcc
Confidence 999999984 4569999999888765 5677888999999999999999999999 44555554433335886
Q ss_pred CCCcEEEEeeecCCCccCCCCc
Q 045443 176 NQPMKIYSSLWNADDWATRGGL 197 (284)
Q Consensus 176 ~~Pm~l~lnlW~ggdWat~GG~ 197 (284)
..||+|.+++|.+++|++..|.
T Consensus 157 ~~~~~~~~~~w~~~~~~~~~~~ 178 (185)
T PF00722_consen 157 STPMNLALGLWPGGDWAGPAGE 178 (185)
T ss_dssp EEEEEEEEEECEBTTTHSSECE
T ss_pred cceeEEEEccccCCCCCCCCCE
Confidence 5899999999999999855553
No 6
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=99.97 E-value=6.1e-30 Score=224.86 Aligned_cols=169 Identities=34% Similarity=0.549 Sum_probs=135.2
Q ss_pred eeeecCCCeEEecCCcEEEEEEeCC------CCCeEEE-cceeEEEEEEEEEEeeCCCCCceEeeeeeeecC---CCCCe
Q 045443 33 DLTWGDKRAKIFNGGQLLSLSLDRV------SGSGFQS-KRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQG---PTHDE 102 (284)
Q Consensus 33 ~~~w~~~nv~~~~~G~~l~L~ld~~------~g~~i~S-k~~~~YG~~e~riKlp~g~s~G~v~Af~l~s~~---~~~dE 102 (284)
...|.++||.+.++|. |.|++.+. .+++|.| ++.|+||+||+|||++.+ .|+|+||||++++ +..+|
T Consensus 24 ~~~~~~~nv~~~~~G~-L~l~~~~~~~~~~~~sg~i~s~~~~~~yG~~ear~k~~~~--~G~~~afw~~~~~~~~~~~~E 100 (210)
T cd00413 24 NMTNSPNNVYVENDGG-LTLRTDRDQTDGPYSSAEIDSQKNNYTYGYYEARAKLAGG--PGAVSAFWTYSDDDDPPDGGE 100 (210)
T ss_pred eEEECccCEEEeCCCe-EEEEEEecCCCCceEeEEEEeCcceEeeEEEEEEEEcCCC--CceEEEEEEeCCCCCCCCCCe
Confidence 3467899999986565 99998543 4689999 999999999999999987 8999999999975 56999
Q ss_pred EEEEEcCCCCCCCeEEEeeEEeCCCC-----CeeeeEeccCCCCCCcEEEEEEEeCCeEEEEcE--EEEeccccCCCCCC
Q 045443 103 IDFEFLGNVSGQPYILHTNIFAQGKG-----NREQQFYLWFDPTRNFHTYSVIWKPQHITFPLE--CSKMLNLLEFPSLK 175 (284)
Q Consensus 103 IDiE~lG~~~g~p~~vqtN~~~~G~~-----~~e~~~~l~fdp~~dFHtY~i~Wtp~~I~f~ir--~~~~~~~~g~~~P~ 175 (284)
||||++|++ +..+++++|..+.+ .....+.+.+++.++||+|+|+|+|+.|+|.|. .+..... .+|.
T Consensus 101 IDiE~~~~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~~~W~~~~i~~yvDG~~~~~~~~---~~p~ 174 (210)
T cd00413 101 IDIEFLGRD---PTTVQTNVHWPGYGAGATTGEEKSVHLPFDPADDFHTYRVDWTPGEITFYVDGVLVATITN---QVPD 174 (210)
T ss_pred EEEEecccC---CCeEEEEEecCCCCcccccccceeecCCCCCccCeEEEEEEEeCCEEEEEECCEEEEEECC---CCCC
Confidence 999999974 56788899876543 233456667778999999999999999999332 2222211 2675
Q ss_pred CCCcEEEEeeecCCCccCCCCcccccCCCCCEEEEEeEEEE
Q 045443 176 NQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRA 216 (284)
Q Consensus 176 ~~Pm~l~lnlW~ggdWat~GG~~k~d~~~~Pf~a~~~~~~v 216 (284)
+||+|+||+|.+++|+ +. .+....|..|.|++|+|
T Consensus 175 -~p~~i~ln~~~~~~~~--~~---~~~~~~~~~~~Vd~vrv 209 (210)
T cd00413 175 -DPMNIILNLWSDGGWW--WG---GPPPGAPAYMEIDWVRV 209 (210)
T ss_pred -CCcEEEEEEEECCCCc--cc---CCCCCCCcEEEEEEEEE
Confidence 9999999999999998 22 24568899999999997
No 7
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=99.96 E-value=1.2e-28 Score=221.60 Aligned_cols=172 Identities=26% Similarity=0.397 Sum_probs=132.7
Q ss_pred eeecCCCeEEecCCcEEEEEEeCC----------CCCeEEE--cceeEEEEEEEEEEeeCCCCCceEeeeeeeecC----
Q 045443 34 LTWGDKRAKIFNGGQLLSLSLDRV----------SGSGFQS--KRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQG---- 97 (284)
Q Consensus 34 ~~w~~~nv~~~~~G~~l~L~ld~~----------~g~~i~S--k~~~~YG~~e~riKlp~g~s~G~v~Af~l~s~~---- 97 (284)
..+.++||.+. +|. |.|+..+. .++.|.| ++.|.||+||||||+|.+ +|+||||||+++.
T Consensus 33 ~~~~~~nv~v~-~G~-L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~--~G~~pafWl~~~~~~~~ 108 (235)
T cd08023 33 YTYRPENAYVE-DGN-LVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG--QGTWPAFWMLGENIKYV 108 (235)
T ss_pred EeCCCCCeEEE-CCE-EEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC--CCceeEEEEcCCCCCCC
Confidence 35578899987 465 88887432 2468999 889999999999999988 8999999999864
Q ss_pred --CCCCeEEE-EEcCCCCCCCeEEEeeEEeCCCC----CeeeeEeccC-CCCCCcEEEEEEEeCCeEEE-----EcEEEE
Q 045443 98 --PTHDEIDF-EFLGNVSGQPYILHTNIFAQGKG----NREQQFYLWF-DPTRNFHTYSVIWKPQHITF-----PLECSK 164 (284)
Q Consensus 98 --~~~dEIDi-E~lG~~~g~p~~vqtN~~~~G~~----~~e~~~~l~f-dp~~dFHtY~i~Wtp~~I~f-----~ir~~~ 164 (284)
+..+|||| |++|+. +..+++++|..+.. ..+..+.+.. +++++||+|+++|+|++|+| +++++.
T Consensus 109 ~w~~~~EIDI~E~~g~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~~~W~p~~i~~yvDG~~v~~~~ 185 (235)
T cd08023 109 GWPASGEIDIMEYVGNE---PNTVYGTLHGGATNDGNNGSGGSYTLPTDDLSDDFHTYAVEWTPDKITFYVDGKLYFTYT 185 (235)
T ss_pred CCCCCCcceeEecCCCC---CCeEEEEEECCCCCCCCCcccccEECCCCCcCCCcEEEEEEEECCEEEEEECCEEEEEEc
Confidence 45789998 999974 56789999976653 2334455555 78999999999999999999 445554
Q ss_pred ecccc-CCCCCCCCCcEEEEeeecCCCccCCCCcccccCCCCCEEEEEeEEEE
Q 045443 165 MLNLL-EFPSLKNQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRA 216 (284)
Q Consensus 165 ~~~~~-g~~~P~~~Pm~l~lnlW~ggdWat~GG~~k~d~~~~Pf~a~~~~~~v 216 (284)
+.... ...+|.++||+|+||+|.+++|+ |.. ..-...|..|.|++|+|
T Consensus 186 ~~~~~~~~~~~~~~p~~liln~~~gg~w~---g~~-~~~~~~p~~~~VDyVrv 234 (235)
T cd08023 186 NPNTDNGGQWPFDQPFYLILNLAVGGNWP---GPP-DDDTPFPATMEVDYVRV 234 (235)
T ss_pred ccccCCcccCCCCCCcEEEEEEEEcCCCC---CCC-CCCCCCCCEEEEEEEEE
Confidence 43221 12345469999999999999999 431 23457799999999997
No 8
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=99.96 E-value=1.6e-28 Score=224.92 Aligned_cols=173 Identities=21% Similarity=0.257 Sum_probs=126.8
Q ss_pred cCCCeEEecCCcEEEEEEeCC-----------CCCeEEEcceeEEEEEEEEEEeeCCCCCceEeeeeeeecC-CCCCeEE
Q 045443 37 GDKRAKIFNGGQLLSLSLDRV-----------SGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQG-PTHDEID 104 (284)
Q Consensus 37 ~~~nv~~~~~G~~l~L~ld~~-----------~g~~i~Sk~~~~YG~~e~riKlp~g~s~G~v~Af~l~s~~-~~~dEID 104 (284)
.++||.+. +|. |.|+..+. .+++|.||+.+.||+||||||+|.+ . .+|||||++++ +.++|||
T Consensus 56 ~~~nv~v~-~G~-L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~--~-~~pAfW~~~~~~~~~gEID 130 (258)
T cd02178 56 SADNVSVE-DGN-LVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL--P-MSSAFWLLSDTKDSTTEID 130 (258)
T ss_pred ccCCeEEE-CCE-EEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC--C-ccceEEEccCCCCCCCcEE
Confidence 35788887 465 88887543 2578999999999999999999976 4 58999999964 6899999
Q ss_pred E-EEcCCCC--CCCeEEEeeEEeCCCC---C--e---eeeEeccCCCCCCcEEEEEEEe-CCeEEE-----EcEEEEecc
Q 045443 105 F-EFLGNVS--GQPYILHTNIFAQGKG---N--R---EQQFYLWFDPTRNFHTYSVIWK-PQHITF-----PLECSKMLN 167 (284)
Q Consensus 105 i-E~lG~~~--g~p~~vqtN~~~~G~~---~--~---e~~~~l~fdp~~dFHtY~i~Wt-p~~I~f-----~ir~~~~~~ 167 (284)
| |++|+.. ..+..+++++|..+.+ + + ...+...++++++||+|+|+|+ |++|+| .++++.+.+
T Consensus 131 I~E~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~p~~i~fyvDG~~~~~~~~~~ 210 (258)
T cd02178 131 ILEHYGGDREEWFATRMNSNTHVFIRDPEQDYQPKDDGSWYYNPTELADDFHVYGVYWKDPDTIRFYIDGVLVRTVENSE 210 (258)
T ss_pred hhhccCCCCCccccceeeeeEEEccCCCCCCccccccceeecCCCccccCeEEEEEEEcCCCeEEEEECCEEEEEEcCcc
Confidence 8 9999763 2246788887643221 1 1 1234556778899999999999 999999 344554432
Q ss_pred ccCCCCCCCCCcEEEEeeecCCCccCCCCcccccCCCCCEEEEEeEEEEe
Q 045443 168 LLEFPSLKNQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAI 217 (284)
Q Consensus 168 ~~g~~~P~~~Pm~l~lnlW~ggdWat~GG~~k~d~~~~Pf~a~~~~~~v~ 217 (284)
. ...+|.++||+|+||++.|| |+...+.. ..-...|..|.|++|||-
T Consensus 211 ~-~~~~~f~~p~~liln~avg~-w~g~~~~~-~~~~~~p~~m~VDYVRvy 257 (258)
T cd02178 211 I-TDGTGFDQPMYIIIDTETYD-WRGEPTDE-ELADDSKNTFYVDYVRVY 257 (258)
T ss_pred c-CcCCcCCCCeEEEEEecccc-CCCCCCcc-ccCCCCCCeEEEEEEEEe
Confidence 2 23456679999999999998 99211221 122456999999999984
No 9
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=99.94 E-value=5.1e-26 Score=210.08 Aligned_cols=168 Identities=23% Similarity=0.294 Sum_probs=119.0
Q ss_pred CCCeEEecCCcEEEEEEeCC-------------------CCCeEEEcceeEEEEEEEEEEeeC-CCCCceEeeeeeeec-
Q 045443 38 DKRAKIFNGGQLLSLSLDRV-------------------SGSGFQSKRDYLFGRIDMQLKLVA-GDSAGTVTAYYLSSQ- 96 (284)
Q Consensus 38 ~~nv~~~~~G~~l~L~ld~~-------------------~g~~i~Sk~~~~YG~~e~riKlp~-g~s~G~v~Af~l~s~- 96 (284)
.+||.+. +|. |.|+..+. +++.++|+..|+|||||||||+++ + +|+||||||+++
T Consensus 43 ~~Nv~v~-dG~-L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~t~~~~~YG~~EaRik~~p~~--~G~wpAfW~~~~~ 118 (269)
T cd02177 43 EKNVVIS-NGI-LELTMRRNANNTTFWDQQQVPDGPTYFTSGIFKSYAKGTYGYYEARIKGADIF--PGVCPSFWLYSDI 118 (269)
T ss_pred ccceEEe-CCE-EEEEEEeccCCCcccccccccCCCCCEeeEEEEecCcceeeEEEEEEECCCCC--CceEeEEEEeccC
Confidence 4688886 476 88887432 346889999999999999999865 5 899999999984
Q ss_pred -------C-CCCCeEEE-EEcCCC---CCCCe----EEEeeEEeCCCCC--e--------eeeEeccCCCCCCcEEEEEE
Q 045443 97 -------G-PTHDEIDF-EFLGNV---SGQPY----ILHTNIFAQGKGN--R--------EQQFYLWFDPTRNFHTYSVI 150 (284)
Q Consensus 97 -------~-~~~dEIDi-E~lG~~---~g~p~----~vqtN~~~~G~~~--~--------e~~~~l~fdp~~dFHtY~i~ 150 (284)
+ |.++|||| |.+|.. .+++. .+|++++.+|.+. + ...+.+.+|++++||+|+|+
T Consensus 119 ~~~~~~~gwp~~GEIDImE~~g~~~~~~~~~~~~~~~~H~~~~~~g~g~w~~~~~~~~~~~~~~~~~~d~~~~fH~y~v~ 198 (269)
T cd02177 119 DYSVANEGEVVYSEIDVVELQQFDWYHQDDIRDMDHNLHAIVKENGQGVWKRPKMYPPTEQLNYHRPFDPSKDFHTYGCN 198 (269)
T ss_pred CCCcccCCCCCCCeEEEEEEecCCccccccccccceEEEEeEecCCcccccCccccccccceEEccCCCCccCcEEEEEE
Confidence 1 57899999 777753 12333 3555454454331 1 12466788999999999999
Q ss_pred EeCCeEEEEcE--EEEeccccCCCCCCCCCcEEEEeeecCC---------CccCCCCcccccCCCCCEEEEEeEEEEe
Q 045443 151 WKPQHITFPLE--CSKMLNLLEFPSLKNQPMKIYSSLWNAD---------DWATRGGLVKTDWTKAPFTAYYRNFRAI 217 (284)
Q Consensus 151 Wtp~~I~f~ir--~~~~~~~~g~~~P~~~Pm~l~lnlW~gg---------dWat~GG~~k~d~~~~Pf~a~~~~~~v~ 217 (284)
|+|++|+|.|. .+.... ..+. ++||++.+++-... .|+ |+. .+-+..|-.|.|++|||-
T Consensus 199 W~~~~i~~yvDg~~~~~~~---~~~w-~~~~~~~~~~~~~~p~~~~~~~~~~~--~~~--~~~~~fP~~m~VDyVRv~ 268 (269)
T cd02177 199 VNQDEIIWYVDGVEVGRKP---NKYW-HRPMNVTLSLGLRKPFVKFFDNKNNA--KAR--EKASDFPTSMYVDYVRVW 268 (269)
T ss_pred EeCCEEEEEECCEEEEEEc---CCcc-ccccEEeeccccCcchhhhhccccCC--CCC--CccCcCCceEEEEEEEEe
Confidence 99999999332 222221 1233 48999998874432 365 444 456789999999999983
No 10
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=99.93 E-value=1e-24 Score=199.81 Aligned_cols=176 Identities=15% Similarity=0.157 Sum_probs=116.1
Q ss_pred eecCCCeEEecCCcEEEEEEeCC-----CCCeEEEccee--EE----EEEEEEEEeeCCC---CCceEeeeeeeecC---
Q 045443 35 TWGDKRAKIFNGGQLLSLSLDRV-----SGSGFQSKRDY--LF----GRIDMQLKLVAGD---SAGTVTAYYLSSQG--- 97 (284)
Q Consensus 35 ~w~~~nv~~~~~G~~l~L~ld~~-----~g~~i~Sk~~~--~Y----G~~e~riKlp~g~---s~G~v~Af~l~s~~--- 97 (284)
+++++|+.+..+|. |.|+..+. .+++|.|+..+ .| |+||||||+|.+. ..|+||||||++++
T Consensus 42 ~~~~~n~~v~~dG~-L~I~a~~~~~~~ytSg~i~s~~~~~~~~~gg~~~~EaRik~p~~~~~~~~G~wPAfWll~~~~~~ 120 (259)
T cd02182 42 TNSTANVQLSGNGT-LQITPLRDGSGKWTSGRIETTRTDFAAPPGGKLRVEASIRLGDVPGSNQQGIWPAFWMLGDSYRG 120 (259)
T ss_pred cCCCcCEEEcCCCe-EEEEEEecCCCCEEEEEEEECCccccccCCCcEEEEEEEECCCCcccCCCCcCeeeeccCCCccC
Confidence 34568999875676 88876433 34688887654 33 4999999999741 37999999999852
Q ss_pred -----CCCCeEEE-EEcCCCCCCCeEEEeeEEeCC---CCCeeee-Ee-ccCCCCCCcEEEEEEEeC-----CeEEE---
Q 045443 98 -----PTHDEIDF-EFLGNVSGQPYILHTNIFAQG---KGNREQQ-FY-LWFDPTRNFHTYSVIWKP-----QHITF--- 158 (284)
Q Consensus 98 -----~~~dEIDi-E~lG~~~g~p~~vqtN~~~~G---~~~~e~~-~~-l~fdp~~dFHtY~i~Wtp-----~~I~f--- 158 (284)
|..+|||| |..|.. +...+ ++|... ...++.. .. ....+.++||+|+++|++ ++|+|
T Consensus 121 ~~~~WP~~GEIDImE~~~~~---~~~~~-t~H~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~~yvD 196 (259)
T cd02182 121 NGTNWPACGELDIMENVNGL---STGYG-TLHCGVAPGGPCNEPTGIGAGTRLCDTGFHTYAVEIDRTNGDAESIRWYLD 196 (259)
T ss_pred CCCCCCccceeeeeeccCCC---CceEE-EEeeCCCCCCCCccccCcccCCCCCCCCcEEEEEEEccCCCCCCEEEEEEC
Confidence 56789999 999853 34444 444321 1111111 10 112245899999999997 99999
Q ss_pred --EcEEEEeccc---cCCCCCCCCCcEEEEeeecCCCccCCCCcccccCCCCCEEEEEeEEEEe
Q 045443 159 --PLECSKMLNL---LEFPSLKNQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAI 217 (284)
Q Consensus 159 --~ir~~~~~~~---~g~~~P~~~Pm~l~lnlW~ggdWat~GG~~k~d~~~~Pf~a~~~~~~v~ 217 (284)
.++++..... ...+.|.++||+|+||++.||+|+ |..-...-...|..|.|++|||-
T Consensus 197 G~~~~t~~~~~~~~~~~~~~~~~~p~ylIlN~avgg~w~--~~~~~~~~~~~p~~m~VDyVRVy 258 (259)
T cd02182 197 GVVYHTVTGARVGDETTWQALAHHPLFIILNVAVGGNWP--GAPNGNTATGSGSAMEVDYVAVY 258 (259)
T ss_pred CEEEEEEehhhcCCCccccCcCCCCeEEEEEEEEeCCcC--CCCCcccccCCCceEEEEEEEEe
Confidence 3344443211 122333469999999999999998 33211112456899999999984
No 11
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=99.92 E-value=1.7e-24 Score=202.34 Aligned_cols=176 Identities=20% Similarity=0.169 Sum_probs=116.1
Q ss_pred eecCCCeEEecCCcEEEEEEeCC-------CCCeEEE--cceeEEEEEEEEEEeeCC-CCCceEeeeeeeecC-------
Q 045443 35 TWGDKRAKIFNGGQLLSLSLDRV-------SGSGFQS--KRDYLFGRIDMQLKLVAG-DSAGTVTAYYLSSQG------- 97 (284)
Q Consensus 35 ~w~~~nv~~~~~G~~l~L~ld~~-------~g~~i~S--k~~~~YG~~e~riKlp~g-~s~G~v~Af~l~s~~------- 97 (284)
.+.++|+.+. +|. |.|+..+. ++++|.| |+.|+|||||||||||.+ ...|+||||||+++.
T Consensus 37 ~Y~~~nv~v~-~G~-L~I~a~~~~~~~~~ytSg~i~T~~k~~f~yG~~EaR~klp~~~~~~G~WPAfWmlg~~~~~~~~~ 114 (295)
T cd02180 37 WYDPDAVTTI-NGS-LRITMDQFRNHGLNFRSGMLQSWNKLCFTGGYIEASASLPGKPDVSGLWPAVWTMGNLGRPGYLA 114 (295)
T ss_pred EecCcCeEec-CCe-EEEEEEeecCCCCCEEEEEEEECCcceeeCCEEEEEEECCCCCCCCCcceeeecccccccccccc
Confidence 4567889887 465 88887432 4578888 788999999999999973 238999999999841
Q ss_pred ------C------CCCeEEE-EEcCCCCCCCeEE----E----------------eeEEeC------CC-CCeee-eE--
Q 045443 98 ------P------THDEIDF-EFLGNVSGQPYIL----H----------------TNIFAQ------GK-GNREQ-QF-- 134 (284)
Q Consensus 98 ------~------~~dEIDi-E~lG~~~g~p~~v----q----------------tN~~~~------G~-~~~e~-~~-- 134 (284)
| ..+|||| |.+|.+......+ | ..+|.. .. ++..+ ..
T Consensus 115 ~~~~~WP~~~~~~~~GEIDImE~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 194 (295)
T cd02180 115 TTEGVWPYSYDGRGAPEIDIIEAQVGNGLGIGQVSQSLQVAPFDAWYRPDYSSDFVTIYNDTTTIMNTYTGGVFQQAISC 194 (295)
T ss_pred cccCCCCcccccCCCCcEEEEeeecCCCCcCceEeeEEeeccccccccCCCCccceEEecCcccccccccCCcccccccc
Confidence 3 2489998 9998532000111 1 111210 00 01000 00
Q ss_pred --eccC----CCCCCcEEEEEEEeC-----CeEEE-----EcEEEEecc--cc----CCCCCCCCCcEEEEeeecCCCcc
Q 045443 135 --YLWF----DPTRNFHTYSVIWKP-----QHITF-----PLECSKMLN--LL----EFPSLKNQPMKIYSSLWNADDWA 192 (284)
Q Consensus 135 --~l~f----dp~~dFHtY~i~Wtp-----~~I~f-----~ir~~~~~~--~~----g~~~P~~~Pm~l~lnlW~ggdWa 192 (284)
.+.- ...++||+|+|+|+| ++|+| .+.++.... .. ..++| ++||+|+||++.||+|+
T Consensus 195 ~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~wyvDg~~~~~~~~~~~~~~~~~~~~~~~-~~P~ylILNlAvGg~w~ 273 (295)
T cd02180 195 VTRLNDSWYPGNGNEFQTYGFEYRPDDEDDGYITWFVDDEPTWTIYAKALGPNGNIGWRIIP-EEPMYIILNLGISSNFQ 273 (295)
T ss_pred ccccCCccccccCCCcEEEEEEEecCCCCCCEEEEEECCEEEEEEehHHcCCcccccccccC-CCCeEEEEEEEeccccC
Confidence 1111 136899999999999 89999 233444321 01 12466 59999999999999998
Q ss_pred CCCCcccccCCCCCEEEEEeEEEEe
Q 045443 193 TRGGLVKTDWTKAPFTAYYRNFRAI 217 (284)
Q Consensus 193 t~GG~~k~d~~~~Pf~a~~~~~~v~ 217 (284)
|. +.+-...|..|+|++|||-
T Consensus 274 ---g~-~~~~~~~P~~m~VDyVRVY 294 (295)
T cd02180 274 ---DI-DWDELQFPATMRIDYVRVY 294 (295)
T ss_pred ---CC-CcccCCCCCEEEEEEEEEE
Confidence 43 2344667999999999984
No 12
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.91 E-value=1.5e-23 Score=198.79 Aligned_cols=132 Identities=18% Similarity=0.209 Sum_probs=94.5
Q ss_pred CCeEEE--cceeEEEEEEEEEEeeCCCCCceEeeeeeeecC------CCCCeEEE-EEcCCCCCCC-------eEEEeeE
Q 045443 59 GSGFQS--KRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQG------PTHDEIDF-EFLGNVSGQP-------YILHTNI 122 (284)
Q Consensus 59 g~~i~S--k~~~~YG~~e~riKlp~g~s~G~v~Af~l~s~~------~~~dEIDi-E~lG~~~g~p-------~~vqtN~ 122 (284)
.++|.| |+.|.|||||||||||.| .|+||||||++.+ |..+|||| |.+|+....+ ..++.++
T Consensus 101 Sgri~T~~kf~f~YGrvE~RaKlP~G--~g~WPAfWmlp~~~~yg~WP~sGEIDImE~~Gn~~~~~~~~~~g~~~v~~tl 178 (330)
T cd08024 101 SARLRTKNSFSFKYGRVEVRAKLPTG--DWLWPAIWMLPRDNVYGGWPRSGEIDIMESRGNRPLYDGGEAIGINSVGSTL 178 (330)
T ss_pred EEEEEeCCccceeceEEEEEEECCCC--CccceeeeecCCccccCCCCCCCcEEEEEEeCCCcccccccccCcceEEEEE
Confidence 356777 678999999999999998 8999999999853 67899998 9999853221 2456666
Q ss_pred EeCCCCC----ee--eeE-eccCCCCCCcEEEEEEEeCCeEEE-----EcEEEEecc-------------------ccCC
Q 045443 123 FAQGKGN----RE--QQF-YLWFDPTRNFHTYSVIWKPQHITF-----PLECSKMLN-------------------LLEF 171 (284)
Q Consensus 123 ~~~G~~~----~e--~~~-~l~fdp~~dFHtY~i~Wtp~~I~f-----~ir~~~~~~-------------------~~g~ 171 (284)
|...... +. ... ....+.+++||+|+|+|+|++|+| .++++.... ..+.
T Consensus 179 H~g~~~~~~~~~~~~~~~~~~~~~~~~~FHtY~veWtpd~I~fyVDG~~~~~v~~~~~~~w~~g~~~~~~~~~~w~~~~~ 258 (330)
T cd08024 179 HWGPDPGQNRYTKTTGKRSDSGGDFADDFHTYGLDWTPDHIRFYVDDRLILTLDVPGQGFWEFGGFSGTPIDNPWAGGGK 258 (330)
T ss_pred EeCCCCCCCccccccceeccCCCCcccCCEEEEEEEeCCEEEEEECCEEEEEEecCCCCceeeccccccccCCcccccCc
Confidence 6322111 11 111 223466789999999999999999 333443210 0123
Q ss_pred CCCCCCCcEEEEeeecCCCcc
Q 045443 172 PSLKNQPMKIYSSLWNADDWA 192 (284)
Q Consensus 172 ~~P~~~Pm~l~lnlW~ggdWa 192 (284)
..|+++|++|+||++.||.|.
T Consensus 259 ~aPFd~~fyliLNvAVGG~~~ 279 (330)
T cd08024 259 MAPFDQEFYLILNVAVGGTNG 279 (330)
T ss_pred CCCCCCCEEEEEEEEecCCCC
Confidence 458899999999999999886
No 13
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.90 E-value=3.3e-23 Score=195.84 Aligned_cols=129 Identities=15% Similarity=0.119 Sum_probs=87.7
Q ss_pred CCeEEE--cceeEEEEEEEEEEeeCCCCCceEeeeeeeecC-------CCCCeEEE-EEcCCCCCC---C----eEEEee
Q 045443 59 GSGFQS--KRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQG-------PTHDEIDF-EFLGNVSGQ---P----YILHTN 121 (284)
Q Consensus 59 g~~i~S--k~~~~YG~~e~riKlp~g~s~G~v~Af~l~s~~-------~~~dEIDi-E~lG~~~g~---p----~~vqtN 121 (284)
.++|.| |++|+|||||||||||.| .|+||||||++.+ |.++|||| |.+||..-. . .+++..
T Consensus 98 Sari~Tk~~f~f~YGrvEvRAKlP~G--dglWPAiWmlP~~~~yg~w~P~sGEIDImE~~Gn~~~~~~g~~~~~~~l~~g 175 (321)
T cd02179 98 SARINTKNSFAFKYGRVEIRAKLPKG--DWIYPELLLEPVNNYYGSSDYASGQIRIAFARGNAVLRADGTDIGGKKLYGG 175 (321)
T ss_pred eeeEEECCcEeEeccEEEEEEEccCC--CCcccceeecccccccCCCCCCCCeEEEEEeCCCCccccCCceeccceEEcc
Confidence 367778 478999999999999999 8999999999853 46899999 999985210 0 122222
Q ss_pred EEeCCCC-Cee---eeEeccCCCCCCcEEEEEEEeCCeEEE-----EcEEEEeccc----------------cCCCCCCC
Q 045443 122 IFAQGKG-NRE---QQFYLWFDPTRNFHTYSVIWKPQHITF-----PLECSKMLNL----------------LEFPSLKN 176 (284)
Q Consensus 122 ~~~~G~~-~~e---~~~~l~fdp~~dFHtY~i~Wtp~~I~f-----~ir~~~~~~~----------------~g~~~P~~ 176 (284)
.+..... .+. .......+.+++||+|+++|+|++|+| .++++..... .....|++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~ddFHtY~leWtpd~I~f~VDg~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~~aPFD 255 (321)
T cd02179 176 PVLTDAEPHRSANLKTKINNELWSDDFHVYTLEWKPDGITLMVDGEEYGEIEPGEGGYSEAANNPAASRWLGGTVMAPFD 255 (321)
T ss_pred cccCCCcccccccccccCCCCccccCcEEEEEEEeCCEEEEEECCEEEEEEecCcCccccccccccCccccccCccCCCC
Confidence 2211111 111 011112456799999999999999999 2334432110 11245889
Q ss_pred CCcEEEEeeecCC
Q 045443 177 QPMKIYSSLWNAD 189 (284)
Q Consensus 177 ~Pm~l~lnlW~gg 189 (284)
+|++|+||+++||
T Consensus 256 ~~FyliLNlAVGG 268 (321)
T cd02179 256 KEFYLSLGVGVGG 268 (321)
T ss_pred CCeEEEEEEEecC
Confidence 9999999999987
No 14
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
Probab=99.90 E-value=1.5e-22 Score=193.31 Aligned_cols=170 Identities=23% Similarity=0.370 Sum_probs=128.4
Q ss_pred eeecCCCeEEecCCcEEEEEEeC-------CCCCeEEEcce--eEEEEEEEEEEeeCCCCCceEeeeeeeec----CCCC
Q 045443 34 LTWGDKRAKIFNGGQLLSLSLDR-------VSGSGFQSKRD--YLFGRIDMQLKLVAGDSAGTVTAYYLSSQ----GPTH 100 (284)
Q Consensus 34 ~~w~~~nv~~~~~G~~l~L~ld~-------~~g~~i~Sk~~--~~YG~~e~riKlp~g~s~G~v~Af~l~s~----~~~~ 100 (284)
++|...++.+..+|. |.|.+++ ..+++++|..+ |+||++|||||+|.+ +|+||||||++. +..+
T Consensus 74 ~~w~~~~~~lt~~~~-l~l~~~~~~~~~~~y~sG~l~T~~r~~~~YG~~Evrak~~~~--~G~wpafw~~~g~~~dg~wp 150 (355)
T COG2273 74 LTWYVSNVVLTIGGT-LELDIEKFKINDRDYRSGMLTTYNRFCFTYGTYEVRAKLPLV--SGLWPAFWTLTGLSRDGGWP 150 (355)
T ss_pred cceeecceeEeeCCe-eeeeechhcccccccccceEEecCcceEeeeEEEEEeccCCC--cccceeeEeccCcccCCCCC
Confidence 466667777776554 8888754 35688998776 999999999999987 999999999984 4567
Q ss_pred CeEEEEEcCCCCCCCeEEEeeEEeCCCCCeeeeEeccC-CCCCCcEEEEEEEeCCeEEE-----EcEEEEeccccCCCCC
Q 045443 101 DEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWF-DPTRNFHTYSVIWKPQHITF-----PLECSKMLNLLEFPSL 174 (284)
Q Consensus 101 dEIDiE~lG~~~g~p~~vqtN~~~~G~~~~e~~~~l~f-dp~~dFHtY~i~Wtp~~I~f-----~ir~~~~~~~~g~~~P 174 (284)
+|||||+||++. .+..+|+|.+.++.++.+......+ +..++||+|.++|.+++|+| +++++... ..+|
T Consensus 151 ~e~d~e~lgg~~-~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~fhty~~~W~~~~i~Wyvdg~~~~~~~~p----~~~~ 225 (355)
T COG2273 151 DEIDIEDLGGQS-TNTVIQTNHYQGGGGGTSKLVDHPNPDAIDGFHTYAFLWGEDSISWYVDGAPVATATKP----DYIP 225 (355)
T ss_pred cceeeeeecCCC-cccceEeeeeccCCCCceecccccCCCcccccccceeeccCCeEEEEEcceEeeEEecc----ccCc
Confidence 999999999764 3456999999998888776666777 88999999999999999999 44444432 3458
Q ss_pred CCCCcEEEEeeecCCCccCCCCcccccCCCCCEEEEEeEE
Q 045443 175 KNQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNF 214 (284)
Q Consensus 175 ~~~Pm~l~lnlW~ggdWat~GG~~k~d~~~~Pf~a~~~~~ 214 (284)
+ .||++++|+|.++.+.+.=|. ......|..+.+..+
T Consensus 226 ~-~p~y~~~nl~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 262 (355)
T COG2273 226 Q-IPFYVLVNLWMGGYAGGPPGE--ALSAGSPLNIDYYRV 262 (355)
T ss_pred C-CcceeEEeecccCccCCCccc--cccCCcceEeeeeee
Confidence 6 999999999998765421122 233344555544443
No 15
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall []. ; GO: 0016762 xyloglucan:xyloglucosyl transferase activity, 0006073 cellular glucan metabolic process, 0005618 cell wall, 0048046 apoplast; PDB: 1UMZ_A 1UN1_B 2VH9_B 2UWC_A 2UWB_B 2UWA_C.
Probab=99.79 E-value=4.7e-20 Score=129.84 Aligned_cols=45 Identities=42% Similarity=0.966 Sum_probs=36.1
Q ss_pred CCCCCCCc--cCCHHHHHHHHHHhhcCeEEccccCCCCCCCCCCCCc
Q 045443 236 QRQWQPRD--ELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFLLSA 280 (284)
Q Consensus 236 ~~~w~~~~--~l~~~~~~~~~~vr~~~m~YdYC~D~~R~p~~~p~EC 280 (284)
...|++.. .|+.+|+++|+|||+||||||||+|++|||.++|+||
T Consensus 5 ~~~w~~~~~~~L~~~q~~~m~wvr~~ymiYdYC~D~~Rfp~~~P~EC 51 (51)
T PF06955_consen 5 SKSWWNQPYAQLSAKQRRQMRWVRRNYMIYDYCTDTKRFPNPLPPEC 51 (51)
T ss_dssp TTSGGCSCCCS--HHHHHHHHHHHHHCEEEEGGG-TTT-SGCGSTTH
T ss_pred CcccccCcccCCCHHHHHHHHHHHHcCeEecccCCCCcCCCCCCCCC
Confidence 45677631 3999999999999999999999999999999889999
No 16
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Group of fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Lam16A belongs to the 'nonspecific' 1,3(4)-beta-glucanase subfamily, although beta-1,6 branching and beta-1,4 bonds specifically define where Lam16A hydrolyzes its substrates, like curdlan (beta-1,3-glucan), lichenin (beta-1,3-1,4-mixed linkage glucan), and laminarin (beta-1,6-branched-1,3-glucan).
Probab=99.36 E-value=4.7e-12 Score=118.07 Aligned_cols=144 Identities=19% Similarity=0.258 Sum_probs=95.3
Q ss_pred CeEEecCCcEEEEEEeCCC---------CCeEEEcceeEEEEEEEEE-EeeCCCCCceEeeeeeeecC-CCCCeEEE-EE
Q 045443 40 RAKIFNGGQLLSLSLDRVS---------GSGFQSKRDYLFGRIDMQL-KLVAGDSAGTVTAYYLSSQG-PTHDEIDF-EF 107 (284)
Q Consensus 40 nv~~~~~G~~l~L~ld~~~---------g~~i~Sk~~~~YG~~e~ri-Klp~g~s~G~v~Af~l~s~~-~~~dEIDi-E~ 107 (284)
.+.+. +|. |.|.+|+.. .++|.||+.|.+|++|+|+ |||.| .|+||||||++.+ |..+|||| |.
T Consensus 43 L~~v~-~g~-l~i~vd~t~~~~~~~gr~S~ri~sk~~f~~g~~~~~~~~~P~g--~G~WPAfW~~g~~WP~~GEIDImE~ 118 (293)
T cd02181 43 LAYVN-SGN-VYLGVDSTTTLPSGAGRNSVRIESKKTYNTGLFIADIAHMPGG--CGTWPAFWTVGPNWPNGGEIDIIEG 118 (293)
T ss_pred CeEee-CCe-EEEEEeceeccCCCCCceEEEEEEeceeecceEEEEhhhCCCC--CCccchhhhcCCCCCCCCcEEEEec
Confidence 44444 354 888886532 3689999999999999997 99998 9999999999876 78899998 99
Q ss_pred cCCCCCCCeEEEeeEEeCCC----------C-------------Cee--------eeEeccCCCCCCcEEEEEEEeCCeE
Q 045443 108 LGNVSGQPYILHTNIFAQGK----------G-------------NRE--------QQFYLWFDPTRNFHTYSVIWKPQHI 156 (284)
Q Consensus 108 lG~~~g~p~~vqtN~~~~G~----------~-------------~~e--------~~~~l~fdp~~dFHtY~i~Wtp~~I 156 (284)
++.... .+..+|..+. + +.. ..+-..|+ +.+=-.|.+||+.+.|
T Consensus 119 vn~~~~----n~~tlHt~~gC~i~~~~~~tg~~~~~nC~~~~~~n~GC~v~~~~~~syG~~FN-~~GGGvyA~ew~~~~I 193 (293)
T cd02181 119 VNLQTS----NQMTLHTGPGCTISNSGSFTGTVTTTNCDVNQNGNAGCGVTSTSTNSYGAGFN-AAGGGVYAMEWTSDGI 193 (293)
T ss_pred cCCCCc----eEEEEecCCCEEcCCCCCccCcccCCCcCCCCCCCCCceeecCCCCccccccc-cCCCcEEEEEEccCcE
Confidence 985332 3334443210 0 000 01112344 4556899999999999
Q ss_pred EE---EcE----EEEeccc-------cCCCCCCC--------CCcEEEEeeecCCCcc
Q 045443 157 TF---PLE----CSKMLNL-------LEFPSLKN--------QPMKIYSSLWNADDWA 192 (284)
Q Consensus 157 ~f---~ir----~~~~~~~-------~g~~~P~~--------~Pm~l~lnlW~ggdWa 192 (284)
+. +-. -+..... +-..||.. ++++|++|+=-=||||
T Consensus 194 ~vWff~R~~iP~di~~~~pdPs~WG~P~A~f~~~~Cdi~~~F~~~~iVfn~tfCGdwA 251 (293)
T cd02181 194 KVWFFPRGSIPADITSGSPDPSTWGTPAASFPGSSCDIDSFFKDQRIVFDTTFCGDWA 251 (293)
T ss_pred EEEEecCCCCCcccccCCCCCcccCcccccCCCCCCChhHhcccCEEEEEeecccccc
Confidence 75 110 1111110 11235521 7899999999999999
No 17
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=99.24 E-value=1.2e-10 Score=115.36 Aligned_cols=171 Identities=25% Similarity=0.314 Sum_probs=106.9
Q ss_pred CCCeEEecCCcEEEEEEeCC-------CCCeEEE--cceeEEEEEEEEEEeeCC-CCCceEeeeeeeec-----------
Q 045443 38 DKRAKIFNGGQLLSLSLDRV-------SGSGFQS--KRDYLFGRIDMQLKLVAG-DSAGTVTAYYLSSQ----------- 96 (284)
Q Consensus 38 ~~nv~~~~~G~~l~L~ld~~-------~g~~i~S--k~~~~YG~~e~riKlp~g-~s~G~v~Af~l~s~----------- 96 (284)
++.|+.. +|. |+|++++. .++-++| |+=|.-|++|++++||.. +..|+|||||++++
T Consensus 160 p~~vtt~-~G~-l~i~~~~~~~~~~~y~sgm~qsWNkfCftgG~~e~~~~lPg~~~~~G~WP~~W~mGNLgRagy~ast~ 237 (504)
T PF03935_consen 160 PDAVTTE-NGS-LVITLDAFPNHNLNYRSGMLQSWNKFCFTGGYIEVSASLPGSPDVSGLWPAFWTMGNLGRAGYGASTD 237 (504)
T ss_pred CCCcEee-CCE-EEEEEEeeeccceeEecchhhhhhhhhcCCcEEEEEEECCCCCcCCCcCchhhhccccCccccccccC
Confidence 4556554 465 99999753 2345566 677889999999999853 35799999999873
Q ss_pred C--------------C---------------------------------CCCeEEE-EEcCCCCC-C---CeEEEeeEE-
Q 045443 97 G--------------P---------------------------------THDEIDF-EFLGNVSG-Q---PYILHTNIF- 123 (284)
Q Consensus 97 ~--------------~---------------------------------~~dEIDi-E~lG~~~g-~---p~~vqtN~~- 123 (284)
+ + ..-|||| |-...... . ...+|..=|
T Consensus 238 g~WPySYd~Cd~g~~~nQt~~~glS~lpgqrlsaCtc~gedhp~p~~GRgAPEIDilE~~~~~~~~~g~~SqS~Q~AP~d 317 (504)
T PF03935_consen 238 GMWPYSYDSCDVGTTPNQTSPDGLSYLPGQRLSACTCPGEDHPGPGVGRGAPEIDILEAQVGAGPGVGVVSQSLQVAPFD 317 (504)
T ss_pred ceecccccccCcccccCccccCccccCCCCcCcCCCCCCCcCCCCCCCCCCCceeEEeeeecccccccccccceeecccc
Confidence 0 0 1259997 87643211 0 112222111
Q ss_pred --e----------CCC--------CCe-eeeE----ec---cC--CCCCCcEEEEEEEeCC-----eEEEE-----cEEE
Q 045443 124 --A----------QGK--------GNR-EQQF----YL---WF--DPTRNFHTYSVIWKPQ-----HITFP-----LECS 163 (284)
Q Consensus 124 --~----------~G~--------~~~-e~~~----~l---~f--dp~~dFHtY~i~Wtp~-----~I~f~-----ir~~ 163 (284)
. +.. |+. .+.+ .+ ++ ....+||+|++||.|. .|+|. +=++
T Consensus 318 ~~y~~~~~~~~i~~~~~T~~N~Y~Gg~~QqAiSa~t~ln~~~Y~~~~~~~f~~YgfEy~Pg~~~~GYItW~vdg~~twti 397 (504)
T PF03935_consen 318 IWYRPDYDFYEIYNPSITQMNTYTGGVYQQAISALTQLNNDWYEEEDGGCFQTYGFEYKPGDGDDGYITWFVDGEPTWTI 397 (504)
T ss_pred cCCCCCCCceEEeCCCCceeccccChhhhhhhhcCcccCccccccCCCCceEEEEEEEEeCCCCCeEEEEEECCEEEEEE
Confidence 0 000 000 0111 11 22 1248899999999875 89992 2222
Q ss_pred Eecc--cc----CCCCCCCCCcEEEEeeecCCCccCCCCcccccCC--CCCEEEEEeEEEEe
Q 045443 164 KMLN--LL----EFPSLKNQPMKIYSSLWNADDWATRGGLVKTDWT--KAPFTAYYRNFRAI 217 (284)
Q Consensus 164 ~~~~--~~----g~~~P~~~Pm~l~lnlW~ggdWat~GG~~k~d~~--~~Pf~a~~~~~~v~ 217 (284)
.... .. .-++|. .||+|++|+....+|+ .+||. ..|.+|.|++|||-
T Consensus 398 ~a~Al~~~~~I~~R~Ip~-EPMyIIlNlgmS~sf~------~vd~~~L~FP~~M~IDYVRVY 452 (504)
T PF03935_consen 398 NAEALGPNPNIGQRPIPE-EPMYIILNLGMSSSFG------YVDWNHLCFPATMRIDYVRVY 452 (504)
T ss_pred EhhhcCCCCCcCccccCc-CCceeeeccccccccC------ccccccccccceEEEeEEEEe
Confidence 2111 11 236886 9999999999999997 26775 47999999999995
No 18
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi. One member is annotated putatively as OPEL, a house-keeping protein, but this could not be confirmed. It contains 5 highly conserved cysteines two of which form a characteristic CGC sequence motif.
Probab=79.43 E-value=6.2 Score=36.23 Aligned_cols=79 Identities=19% Similarity=0.258 Sum_probs=47.5
Q ss_pred EEEEEEeeCCC-----CCceEeeeeeeecC----------------CCCCeEEE-EEcCCCCCCCeEEEeeEEe-CCCCC
Q 045443 73 IDMQLKLVAGD-----SAGTVTAYYLSSQG----------------PTHDEIDF-EFLGNVSGQPYILHTNIFA-QGKGN 129 (284)
Q Consensus 73 ~e~riKlp~g~-----s~G~v~Af~l~s~~----------------~~~dEIDi-E~lG~~~g~p~~vqtN~~~-~G~~~ 129 (284)
|-.+.+||... ...=.||+||+... ..++|.|| |+|.. ++. .+.+.+|. +|..+
T Consensus 103 Flfef~MP~~~~~~~~~~~DmPAIWlLNA~IpRT~QY~~~~CSCW~sGCGEfDifEVl~~--g~~-k~~St~H~~qG~~~ 179 (235)
T PF10287_consen 103 FLFEFSMPHETDGGSGFNYDMPAIWLLNAQIPRTSQYGNAGCSCWKSGCGEFDIFEVLNS--GDD-KLKSTFHDYQGTDD 179 (235)
T ss_pred EEEEEECCCCcCCCCCCCCCcChhHhccccCcchhhcCCCCCCccCCCcccceeeeeccC--CCc-eeEEEEecccCccc
Confidence 45566777621 24568999999741 36899998 99975 333 57777775 44321
Q ss_pred e--eeeEeccC-CCCCCcEEEEEEEeCC
Q 045443 130 R--EQQFYLWF-DPTRNFHTYSVIWKPQ 154 (284)
Q Consensus 130 ~--e~~~~l~f-dp~~dFHtY~i~Wtp~ 154 (284)
. ...-.-.| -|+...-++.+.++.+
T Consensus 180 ~~~g~G~~~yf~RPt~~~~k~aVifd~~ 207 (235)
T PF10287_consen 180 INGGGGSSDYFKRPTSGTMKVAVIFDSS 207 (235)
T ss_pred cCCCCCCCCcccCCCCCCeEEEEEEcCC
Confidence 1 00111122 3566777777777543
No 19
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=40.31 E-value=1.5e+02 Score=22.04 Aligned_cols=22 Identities=14% Similarity=0.220 Sum_probs=16.5
Q ss_pred EecCCcEEEEEEeCCCCCeEEE
Q 045443 43 IFNGGQLLSLSLDRVSGSGFQS 64 (284)
Q Consensus 43 ~~~~G~~l~L~ld~~~g~~i~S 64 (284)
.+.+|+.+.+.+|+.+|.-++.
T Consensus 61 ~~~dG~~~ev~vD~~tG~V~~~ 82 (83)
T PF13670_consen 61 RDKDGKKVEVYVDPATGEVVKE 82 (83)
T ss_pred EECCCCEEEEEEcCCCCeEeec
Confidence 4567888888888888876654
No 20
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=29.11 E-value=35 Score=26.95 Aligned_cols=8 Identities=38% Similarity=0.052 Sum_probs=3.6
Q ss_pred chhHHHHH
Q 045443 7 CNGLLLLV 14 (284)
Q Consensus 7 ~~~~~~~~ 14 (284)
+.+|+||+
T Consensus 6 ~llL~l~L 13 (95)
T PF07172_consen 6 FLLLGLLL 13 (95)
T ss_pred HHHHHHHH
Confidence 44444443
No 21
>PRK15221 Saf-pilin pilus formation protein SafA; Provisional
Probab=26.44 E-value=1.1e+02 Score=26.65 Aligned_cols=48 Identities=31% Similarity=0.418 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhccccccccCceeeecCCCeEEecCCcEEEEEEeCCCC
Q 045443 10 LLLLVSVLMVVASSAVGSFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSG 59 (284)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~f~~~f~~~w~~~nv~~~~~G~~l~L~ld~~~g 59 (284)
|.+-+.|.+.++++.+++|.-+=+.. ..-+|.+...|+ |+++|++-+|
T Consensus 7 liiasalsmmaascyags~~pnt~~~-~SvDv~Fa~p~~-ltvtltpV~g 54 (165)
T PRK15221 7 LIIASALSMMAASCYAGSFLPNTEQQ-KSVDINFASPQQ-LTVSLDPVSG 54 (165)
T ss_pred HHHHHHHHHHHHHhhhcccccCCccc-eeEeEEEcCCCc-cEEEEeecCc
Confidence 45556666666788898888765532 233577776664 9999987544
Done!