Query 045444
Match_columns 217
No_of_seqs 171 out of 344
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 13:16:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045444.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045444hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00148 40S ribosomal protein 100.0 1E-103 3E-108 676.7 19.6 205 1-216 1-205 (205)
2 KOG3283 40S ribosomal protein 100.0 9E-104 2E-108 665.4 14.4 200 1-217 1-200 (200)
3 TIGR00307 S8e ribosomal protei 100.0 1.8E-56 3.8E-61 362.1 12.7 104 1-106 1-104 (127)
4 PRK04049 30S ribosomal protein 100.0 9.6E-55 2.1E-59 351.9 13.0 104 1-106 1-104 (127)
5 PF01201 Ribosomal_S8e: Riboso 100.0 8.5E-55 1.8E-59 354.1 6.9 109 1-109 1-111 (132)
6 COG2007 RPS8A Ribosomal protei 100.0 5.3E-50 1.2E-54 323.4 12.1 105 1-106 1-105 (127)
7 PTZ00388 40S ribosomal protein 99.7 1.2E-17 2.7E-22 145.1 6.9 51 58-108 138-188 (223)
8 KOG3163 Uncharacterized conser 97.3 0.00014 2.9E-09 64.7 2.6 54 58-111 175-228 (260)
9 PHA02769 hypothetical protein; 69.1 2.4 5.2E-05 35.5 1.1 21 104-125 62-82 (154)
10 cd03148 GATase1_EcHsp31_like T 35.3 15 0.00032 32.4 0.4 38 167-204 118-159 (232)
11 cd04477 RPA1N RPA1N: A subfami 33.7 23 0.0005 27.4 1.2 22 86-107 55-76 (97)
12 PF08309 LVIVD: LVIVD repeat; 32.7 83 0.0018 21.0 3.7 32 58-94 8-39 (42)
13 PF09012 FeoC: FeoC like trans 30.3 32 0.0007 24.3 1.5 34 166-199 30-65 (69)
14 cd03147 GATase1_Ydr533c_like T 29.5 24 0.00052 31.0 0.8 38 168-205 117-159 (231)
15 PF04214 DUF411: Protein of un 28.5 39 0.00084 25.4 1.6 25 191-215 28-52 (70)
16 PF04057 Rep-A_N: Replication 27.6 31 0.00066 26.8 1.0 45 50-107 34-78 (101)
17 PF09064 Tme5_EGF_like: Thromb 26.4 34 0.00075 22.5 0.9 15 186-200 15-29 (34)
18 cd04318 EcAsnRS_like_N EcAsnRS 26.0 1.5E+02 0.0032 21.2 4.3 56 43-111 7-62 (82)
19 PF04083 Abhydro_lipase: Parti 23.3 34 0.00074 24.6 0.5 7 194-200 20-26 (63)
20 PF09452 Mvb12: ESCRT-I subuni 22.5 38 0.00082 26.8 0.6 10 109-118 63-72 (91)
21 PF10878 DUF2672: Protein of u 21.6 42 0.0009 25.0 0.7 14 199-212 26-39 (67)
No 1
>PTZ00148 40S ribosomal protein S8; Provisional
Probab=100.00 E-value=1.5e-103 Score=676.69 Aligned_cols=205 Identities=70% Similarity=1.078 Sum_probs=198.0
Q ss_pred CccccCCCCCCccCCCCCccchhhhhhhcCCCCCccccCCCceEEEeeeeCCceeeeEEeeceeeeeeCCcceEEeeeEe
Q 045444 1 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRIL 80 (217)
Q Consensus 1 MgIs~~g~~kRk~TGGk~~~~rKKRK~ElGr~pa~TkiG~~~ri~~vRvrGGN~K~Ralr~~~gN~s~~se~~tkK~kI~ 80 (217)
|||||||+|+|++|||+++++|||||||||||||+|+||+ .++++|||||||+|+||||+|+|||+||+++++++|+|+
T Consensus 1 MGIsrd~~~kRk~TGGk~~~~RkKRK~ElGR~pa~Tklg~-~ri~~VR~RGGN~K~Ralr~~~gNv~~~se~~tkk~kIl 79 (205)
T PTZ00148 1 MGISRDSRHKRRLTGGKMPIHRKKRKFELGRQPANTKLGS-KRVRPVRCRGGNFKFRALRLDTGNFSWGSQGIAKKTRIL 79 (205)
T ss_pred CCccccCCccccCCCCccccchhhhHhhcCCCccccccCC-eEEEEEEccCCceeeEEEeecceEEeecCCCeEEeeEEE
Confidence 9999999999999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred EEeecCCCchhhhcccceeceEEeecCCcchHHHhhhhcccccccccccccccccccccchhHHHHhhhcchHHHHHHHH
Q 045444 81 DVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKAVTKKETTEEGEGAAAAAEETKKSNHVVRKLEK 160 (217)
Q Consensus 81 ~Vv~N~sNnelvRrn~ltKGaII~idatPfrqwye~hy~~~lg~kk~~k~~~~~~~~~~~~e~~~~~~k~s~~~~kk~~~ 160 (217)
+||||||||||||||||||||||+||||||+||||+|||+|||+++..+ + +|++.+++++|++++++|++
T Consensus 80 ~Vv~N~sNne~vRrniitKGAII~tda~Pfrqwy~~hy~~~lg~kk~~~----~------~~~~~~~~k~s~~~~kk~~~ 149 (205)
T PTZ00148 80 DVVYNASNNELVRTKTLVKNAIVQIDAAPFKQWYAKHYGIDLGKKKKYK----K------EEENKKAKKKSESLVAKLEV 149 (205)
T ss_pred EEEecCcCHHHHhhcceeeceEEeeccchHHHHHHHhhCcccccccccc----c------chhhhhhhhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998753 1 13556789999999999999
Q ss_pred HhhcCCCChHHHHHhhcCeEEEEEeccCCcccccceeeecCcchhhHHHHHHhhhC
Q 045444 161 RQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKG 216 (217)
Q Consensus 161 r~k~~~~~~~l~eqf~~GrllA~isSRPGQ~GraDGyiLEGkELeFY~kki~~kK~ 216 (217)
|+++++||++|+|||++||||||||||||||||||||||||+||+||+++|++||+
T Consensus 150 r~~~~~~~~~leeqf~~GrllA~IsSRPGQ~Gr~dGyILEGkEL~FY~kk~~~kK~ 205 (205)
T PTZ00148 150 RKKNHKIDKALLEQFQSGRLLARISSRPGQSGRADGYILEGKELEFYLKKLEKKKK 205 (205)
T ss_pred hhhhccccHHHHHHHhhCeEEEEEeCCCCCccceeEEEEecHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999874
No 2
>KOG3283 consensus 40S ribosomal protein S8 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.7e-104 Score=665.40 Aligned_cols=200 Identities=72% Similarity=1.146 Sum_probs=195.6
Q ss_pred CccccCCCCCCccCCCCCccchhhhhhhcCCCCCccccCCCceEEEeeeeCCceeeeEEeeceeeeeeCCcceEEeeeEe
Q 045444 1 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRIL 80 (217)
Q Consensus 1 MgIs~~g~~kRk~TGGk~~~~rKKRK~ElGr~pa~TkiG~~~ri~~vRvrGGN~K~Ralr~~~gN~s~~se~~tkK~kI~ 80 (217)
||||||+||||++||+++.++|||||||||||||||+||+ ++++.|||||||.||||||+|+|||+|+|||+++||+|+
T Consensus 1 MGIsrds~HKRrkTGakr~~~rKKRk~elGrqpanTKIg~-~~~~~VRvRGGN~KyrALRlD~Gnfsw~Se~~trktri~ 79 (200)
T KOG3283|consen 1 MGISRDSWHKRRKTGAKRKQYRKKRKFELGRQPANTKIGP-KRITPVRVRGGNKKYRALRLDMGNFSWGSEGTTRKTRIL 79 (200)
T ss_pred CCccccchhhhhccccccccchhhhhhhccCCcccccccc-ceeeEEEecCCchhhheeeeccCcccccccceeeeeeee
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred EEeecCCCchhhhcccceeceEEeecCCcchHHHhhhhcccccccccccccccccccccchhHHHHhhhcchHHHHHHHH
Q 045444 81 DVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKAVTKKETTEEGEGAAAAAEETKKSNHVVRKLEK 160 (217)
Q Consensus 81 ~Vv~N~sNnelvRrn~ltKGaII~idatPfrqwye~hy~~~lg~kk~~k~~~~~~~~~~~~e~~~~~~k~s~~~~kk~~~ 160 (217)
+||||||||||||||||||+|||+|||+||+||||+|||+|||+|++. ++++++|+++++||++
T Consensus 80 dvvY~~snneLVRT~TL~k~aiV~ida~Pfrqwyeshy~~~lg~kk~~----------------~~~~k~sk~~~rk~~~ 143 (200)
T KOG3283|consen 80 DVVYHPSNNELVRTNTLTKSAIVQIDAAPFRQWYESHYGLPLGRKKNK----------------ILNKKKSKHVQRKYAE 143 (200)
T ss_pred eeEecCCccceeeecchhhceEEEeccchHHHHHHHhhccccccccCc----------------cccchhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999874 2568899999999999
Q ss_pred HhhcCCCChHHHHHhhcCeEEEEEeccCCcccccceeeecCcchhhHHHHHHhhhCC
Q 045444 161 RQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217 (217)
Q Consensus 161 r~k~~~~~~~l~eqf~~GrllA~isSRPGQ~GraDGyiLEGkELeFY~kki~~kK~k 217 (217)
|+++++||++|+|||++|+||||||||||||||||||||||+||+||++||++||+|
T Consensus 144 r~~~a~vds~l~eqF~~GrL~A~isSrpGQ~GradgyileGkEl~FYlrki~~kk~k 200 (200)
T KOG3283|consen 144 RQKNAKVDSSLEEQFAAGRLYACISSRPGQCGRADGYILEGKELEFYLRKIKAKKGK 200 (200)
T ss_pred hhccccccHHHHHHHhcCcEEEEEeCCCCcccccceeeeccchhHHHHHHhhhhcCC
Confidence 999999999999999999999999999999999999999999999999999999975
No 3
>TIGR00307 S8e ribosomal protein S8.e. Archaeal and eukaryotic ribosomal protein S8. This model could easily have been split into two models, one for eukaryotic S8 and one for archaeal S8; eukaryotic forms invariably have in insert of about 80 residues that archaeal forms of S8 do not.
Probab=100.00 E-value=1.8e-56 Score=362.09 Aligned_cols=104 Identities=46% Similarity=0.687 Sum_probs=103.0
Q ss_pred CccccCCCCCCccCCCCCccchhhhhhhcCCCCCccccCCCceEEEeeeeCCceeeeEEeeceeeeeeCCcceEEeeeEe
Q 045444 1 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRIL 80 (217)
Q Consensus 1 MgIs~~g~~kRk~TGGk~~~~rKKRK~ElGr~pa~TkiG~~~ri~~vRvrGGN~K~Ralr~~~gN~s~~se~~tkK~kI~ 80 (217)
||| |||+|+|++|||+++++|||||||||||||+|+||+ ++++.|||||||+|+||||+|+|||+||++++|+|++|+
T Consensus 1 M~i-~qg~~~rk~TGGr~~~~rkKRk~ElGr~pa~T~ig~-~r~~~vR~rGGn~K~Ralr~~~~Nv~~~~~~~t~k~kIl 78 (127)
T TIGR00307 1 MGI-WQGRSRRKPTGGKYRQARKKRKYELGREPAETKIGE-RRIKKVRTRGGNKKVRLLRDETANVSDPETGKVKKVEIA 78 (127)
T ss_pred Ccc-cccCCcccCCCCccccccccchhhcCCCccccccCc-cEEEEEEcCCCceEEEEEEeeeeEEecccCCeEEEEEEE
Confidence 999 789999999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred EEeecCCCchhhhcccceeceEEeec
Q 045444 81 DVVYNASNNELVRTQTLVKSAIVQVD 106 (217)
Q Consensus 81 ~Vv~N~sNnelvRrn~ltKGaII~id 106 (217)
+|+||||||||||||||||||||+||
T Consensus 79 ~Vv~NpaN~~yvR~niitKGaIIetd 104 (127)
T TIGR00307 79 GVVENPANNHYVRRNVITKGAIVETD 104 (127)
T ss_pred EEEECCCCHHHhhcCcEecceEEEEe
Confidence 99999999999999999999999998
No 4
>PRK04049 30S ribosomal protein S8e; Validated
Probab=100.00 E-value=9.6e-55 Score=351.93 Aligned_cols=104 Identities=40% Similarity=0.595 Sum_probs=103.0
Q ss_pred CccccCCCCCCccCCCCCccchhhhhhhcCCCCCccccCCCceEEEeeeeCCceeeeEEeeceeeeeeCCcceEEeeeEe
Q 045444 1 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRIL 80 (217)
Q Consensus 1 MgIs~~g~~kRk~TGGk~~~~rKKRK~ElGr~pa~TkiG~~~ri~~vRvrGGN~K~Ralr~~~gN~s~~se~~tkK~kI~ 80 (217)
|+| |||+|+|++|||+++++|||||||||||||+|+||+ +++++|||||||+|+|||++++|||+||++++++|++|+
T Consensus 1 m~~-~qg~~~Rk~TGGr~~~~rkKRK~ElGr~pa~T~lg~-~~~~~vR~rGGn~K~R~lr~~~~Nv~~~~~~~tkk~kI~ 78 (127)
T PRK04049 1 MMI-WQGRSLRKPTGGRKRPARKKRKYELGREPTETTVGE-DKRKIVRVRGGNRKVRLLRANYANVADPKTGKTKKVKIL 78 (127)
T ss_pred Ccc-ccCCCcccCCCCccccccchhhhhcCCCccccccCc-eEEEEEEccCCceEEEEEEecceEEeecccCeEEEEEEE
Confidence 999 999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred EEeecCCCchhhhcccceeceEEeec
Q 045444 81 DVVYNASNNELVRTQTLVKSAIVQVD 106 (217)
Q Consensus 81 ~Vv~N~sNnelvRrn~ltKGaII~id 106 (217)
+|+||||||||||||||||||||+||
T Consensus 79 ~Vv~N~aN~~yvRrniitKGaII~te 104 (127)
T PRK04049 79 TVVENPANPHYARRNIITKGAIIETE 104 (127)
T ss_pred EEEECCCCHHHhhcCCEecceEEEec
Confidence 99999999999999999999999986
No 5
>PF01201 Ribosomal_S8e: Ribosomal protein S8e; InterPro: IPR022309 A number of eukaryotic and archaeal ribosomal proteins have been grouped based on sequence similarities []. One of these families, S8e, consists of a number of proteins with either about 220 amino acids (in eukaryotes) or about 125 amino acids (in archaea). This entry also contains proteins annotated as NSA2, which are though to be involved in ribosomal biogenesis of the 60S ribosomal subunit, having a role in the quality control of pre-60S particles. They are a component of the pre-66S ribosomal particle. ; PDB: 2KCY_A 2KCP_A 3U5G_I 3U5C_I 2KCO_A 2XZM_2 2XZN_2.
Probab=100.00 E-value=8.5e-55 Score=354.06 Aligned_cols=109 Identities=54% Similarity=0.879 Sum_probs=87.3
Q ss_pred CccccCCCCCCccCCCCCccchhhhhhhcCCCCCccccCC--CceEEEeeeeCCceeeeEEeeceeeeeeCCcceEEeee
Q 045444 1 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSS--NKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTR 78 (217)
Q Consensus 1 MgIs~~g~~kRk~TGGk~~~~rKKRK~ElGr~pa~TkiG~--~~ri~~vRvrGGN~K~Ralr~~~gN~s~~se~~tkK~k 78 (217)
|||+++++|+|++|||++.++++|||||+||||++|+||+ +.+++.+|+||||.|+||||+++|||+||+++++++++
T Consensus 1 M~i~~~~~~krk~tGgr~~~~rkKRK~e~Gr~p~~t~lg~~~~~~ik~~R~rGGn~K~r~lr~~~anv~~~~~~~t~k~~ 80 (132)
T PF01201_consen 1 MGINQGIRHKRKKTGGRRDPHRKKRKYELGRPPANTKLGEVLSNRIKQVRVRGGNRKIRALRLDYANVSWPSEGKTKKVK 80 (132)
T ss_dssp --EE--CCCSEETTTEE----S---GGGEE-----BEESC-C-HEEEEEETSSS-EEEEECCESEEEEEETTTTEEEEEE
T ss_pred CCcchhhhhhhCCCcCcCCHHHHhHHHHhcccccccEEccccceeEEEEEccCCcEeeeeeeecccEEEecccCceEEee
Confidence 9998888999999999999999999999999999999998 68999999999999999999999999999999999999
Q ss_pred EeEEeecCCCchhhhcccceeceEEeecCCc
Q 045444 79 ILDVVYNASNNELVRTQTLVKSAIVQVDAAP 109 (217)
Q Consensus 79 I~~Vv~N~sNnelvRrn~ltKGaII~idatP 109 (217)
|++|+||||||+|||||||||||||+||++|
T Consensus 81 I~~V~~Npan~~~vR~~iitKGaII~~d~s~ 111 (132)
T PF01201_consen 81 IISVVYNPANNEYVRRNIITKGAIIETDVSE 111 (132)
T ss_dssp EEEECSSSSTHHHHHTTBB-TT-EEEEESHT
T ss_pred eEEEEEcCCChhhhhcCceecceEEEEeecc
Confidence 9999999999999999999999999999983
No 6
>COG2007 RPS8A Ribosomal protein S8E [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.3e-50 Score=323.37 Aligned_cols=105 Identities=45% Similarity=0.698 Sum_probs=103.2
Q ss_pred CccccCCCCCCccCCCCCccchhhhhhhcCCCCCccccCCCceEEEeeeeCCceeeeEEeeceeeeeeCCcceEEeeeEe
Q 045444 1 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRIL 80 (217)
Q Consensus 1 MgIs~~g~~kRk~TGGk~~~~rKKRK~ElGr~pa~TkiG~~~ri~~vRvrGGN~K~Ralr~~~gN~s~~se~~tkK~kI~ 80 (217)
||| |||+|+|++|||+.+.+||||||||||||++|+||+..+++.||+||||+|+|||++++|||+||+++.+++++|+
T Consensus 1 M~~-~qg~~~rk~tGg~~~~~RkKrK~elGreP~~t~ige~~~~~~vr~rGgn~K~r~~~~~~aNV~~p~~g~~~k~~Ii 79 (127)
T COG2007 1 MGI-WQGRSKRKPTGGKRHQARKKRKFELGREPTETKIGEKRKRKKVRTRGGNFKVRALRAKTANVSDPETGKTKKAKII 79 (127)
T ss_pred CCc-cccccccCCcccchhhhhhhhhhhcCCCCcccccCccceEEEEEeecCCeEEEEEEeccceecccccCcEEEEEEE
Confidence 996 9999999999999999999999999999999999997799999999999999999999999999999999999999
Q ss_pred EEeecCCCchhhhcccceeceEEeec
Q 045444 81 DVVYNASNNELVRTQTLVKSAIVQVD 106 (217)
Q Consensus 81 ~Vv~N~sNnelvRrn~ltKGaII~id 106 (217)
+|+|||||++|||+|||||||||+||
T Consensus 80 ~V~~nPan~~y~rrniitKGaiI~t~ 105 (127)
T COG2007 80 GVVENPANPEYVRRNIITKGAIIETE 105 (127)
T ss_pred EEEcCCCChHHhhccceecceEEEEe
Confidence 99999999999999999999999987
No 7
>PTZ00388 40S ribosomal protein S8-like; Provisional
Probab=99.71 E-value=1.2e-17 Score=145.08 Aligned_cols=51 Identities=20% Similarity=0.243 Sum_probs=49.6
Q ss_pred EEeeceeeeeeCCcceEEeeeEeEEeecCCCchhhhcccceeceEEeecCC
Q 045444 58 ALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAA 108 (217)
Q Consensus 58 alr~~~gN~s~~se~~tkK~kI~~Vv~N~sNnelvRrn~ltKGaII~idat 108 (217)
.||+++|||+||+.+.|.+++|++|++||+|++|+|+|+|||||||+||++
T Consensus 138 glr~~~AnVt~p~~~~t~~~kIi~V~kNPan~~Ytr~nvITKGTIIEtnvs 188 (223)
T PTZ00388 138 GLRFKKAHVTHPELKTTFYLDIIGVKKNPQSNLYTSLGVITKGTIIEVNVS 188 (223)
T ss_pred hhhcceeEEeccccCcEEEEEEEEEeeCCCChhhhhcCceeeeeEEEeehh
Confidence 589999999999999999999999999999999999999999999999987
No 8
>KOG3163 consensus Uncharacterized conserved protein related to ribosomal protein S8E [General function prediction only]
Probab=97.32 E-value=0.00014 Score=64.74 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=51.1
Q ss_pred EEeeceeeeeeCCcceEEeeeEeEEeecCCCchhhhcccceeceEEeecCCcch
Q 045444 58 ALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFK 111 (217)
Q Consensus 58 alr~~~gN~s~~se~~tkK~kI~~Vv~N~sNnelvRrn~ltKGaII~idatPfr 111 (217)
+||...+||+.|.-++|....|+.|..||+++-|---++||||+||++|.++.-
T Consensus 175 ~lRfkkAhVthpEL~~Tf~LpIigvKKNP~sp~yT~LGvitkGTviEvnVseLG 228 (260)
T KOG3163|consen 175 GLRFKKAHVTHPELKVTFCLPIIGVKKNPSSPMYTSLGVITKGTVIEVNVSELG 228 (260)
T ss_pred hhhhhhccccChhhceEEEeeeeEeccCCCCcceeecceeecceEEEEeccccc
Confidence 578889999999999999999999999999999999999999999999998754
No 9
>PHA02769 hypothetical protein; Provisional
Probab=69.09 E-value=2.4 Score=35.46 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=18.5
Q ss_pred eecCCcchHHHhhhhccccccc
Q 045444 104 QVDAAPFKQWYLQHYGVDIGRK 125 (217)
Q Consensus 104 ~idatPfrqwye~hy~~~lg~k 125 (217)
.-|++||| |....|++|+.+.
T Consensus 62 lhd~~pfr-~ia~~~~ip~drs 82 (154)
T PHA02769 62 LHDNTPFR-FIAQQYNIPNDRS 82 (154)
T ss_pred eccCCchh-hHHHHhCCCcchH
Confidence 45999998 9999999999964
No 10
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=35.32 E-value=15 Score=32.37 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=27.7
Q ss_pred CChHHHHHhhcCeEEEEEeccC---Ccccccce-eeecCcch
Q 045444 167 LDPHIEEQFGAGRLLACISSRP---GQCGRADG-YILEGKEL 204 (217)
Q Consensus 167 ~~~~l~eqf~~GrllA~isSRP---GQ~GraDG-yiLEGkEL 204 (217)
+-.+|.+...+|+++|.||.=| --.+..|| |||+|+.+
T Consensus 118 l~~ll~~f~~~gK~VaAICHGp~~L~~a~l~~g~~ll~Gk~v 159 (232)
T cd03148 118 VAAALQWAIKNDRFVITLCHGPAAFLAARHGGGKNPLEGYSV 159 (232)
T ss_pred HHHHHHHHHHcCCEEEEECcHHHHHHhccCCCCCeeeCCcEE
Confidence 3345788889999999999988 22355555 88888644
No 11
>cd04477 RPA1N RPA1N: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA1N is known to specifically interact with the p53 tumor suppressor, DNA polymerase alpha, and transcription factors. In addition to RPA1N, RPA1 contains three other OB folds: ssDNA-binding domain (DBD)-A, DBD-B, and DBD-C.
Probab=33.70 E-value=23 Score=27.44 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.1
Q ss_pred CCCchhhhcccceeceEEeecC
Q 045444 86 ASNNELVRTQTLVKSAIVQVDA 107 (217)
Q Consensus 86 ~sNnelvRrn~ltKGaII~ida 107 (217)
..=|++|..|.|.+||||++..
T Consensus 55 tqln~~v~~g~l~~~sIirl~~ 76 (97)
T cd04477 55 TQLNPLVESGQLQRGSIIRLKR 76 (97)
T ss_pred hhhhhHHhcCCccCCcEEEECe
Confidence 4558999999999999999864
No 12
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=32.68 E-value=83 Score=20.97 Aligned_cols=32 Identities=28% Similarity=0.308 Sum_probs=21.9
Q ss_pred EEeeceeeeeeCCcceEEeeeEeEEeecCCCchhhhc
Q 045444 58 ALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRT 94 (217)
Q Consensus 58 alr~~~gN~s~~se~~tkK~kI~~Vv~N~sNnelvRr 94 (217)
++.-+++=+++..+|. .|+|| .||+||.++.+
T Consensus 8 ~v~g~yaYva~~~~Gl----~IvDI-SnPs~P~~v~~ 39 (42)
T PF08309_consen 8 AVSGNYAYVADGNNGL----VIVDI-SNPSNPVLVGS 39 (42)
T ss_pred EEECCEEEEEeCCCCE----EEEEC-CCCCCCEEEEE
Confidence 4445677777766764 46776 68999987753
No 13
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=30.34 E-value=32 Score=24.33 Aligned_cols=34 Identities=15% Similarity=0.201 Sum_probs=23.5
Q ss_pred CCChHHHHHhhcCeEEEEEeccC--Ccccccceeee
Q 045444 166 TLDPHIEEQFGAGRLLACISSRP--GQCGRADGYIL 199 (217)
Q Consensus 166 ~~~~~l~eqf~~GrllA~isSRP--GQ~GraDGyiL 199 (217)
.|++.|+.-...|+|-....+-. |.|+.|++.-.
T Consensus 30 ~ve~mL~~l~~kG~I~~~~~~~~~~~~C~~C~~~~~ 65 (69)
T PF09012_consen 30 AVEAMLEQLIRKGYIRKVDMSSCCGGSCSSCGPASK 65 (69)
T ss_dssp HHHHHHHHHHCCTSCEEEEEE--SSSSSSS-SS---
T ss_pred HHHHHHHHHHHCCcEEEecCCCCCCCCCCCCCCccc
Confidence 46788999999999988877765 78999986543
No 14
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=29.49 E-value=24 Score=31.00 Aligned_cols=38 Identities=16% Similarity=0.389 Sum_probs=28.8
Q ss_pred ChHHHHHhhcCeEEEEEeccCCccccc----ce-eeecCcchh
Q 045444 168 DPHIEEQFGAGRLLACISSRPGQCGRA----DG-YILEGKELE 205 (217)
Q Consensus 168 ~~~l~eqf~~GrllA~isSRPGQ~Gra----DG-yiLEGkELe 205 (217)
-.+|.+.+++|+++|.||.=|.=-..+ || +||.|+.+-
T Consensus 117 ~~ll~~f~~~gK~iaAIChgp~~L~~a~~~~~g~~ll~Gk~vT 159 (231)
T cd03147 117 QKIAQQIYANGGVVAAVCHGPAILANLKDPKTGKPLIKGKTVT 159 (231)
T ss_pred HHHHHHHHHcCCEEEEEChHHHHHHhhhcccCCCcccCCCEEE
Confidence 345788899999999999988544544 65 788887653
No 15
>PF04214 DUF411: Protein of unknown function, DUF; InterPro: IPR007332 The function of the members of this bacterial protein family is unknown. Some members may be involved in conferring cation resistance.
Probab=28.55 E-value=39 Score=25.42 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=17.4
Q ss_pred ccccceeeecCcchhhHHHHHHhhh
Q 045444 191 CGRADGYILEGKELEFYMKKLQRKK 215 (217)
Q Consensus 191 ~GraDGyiLEGkELeFY~kki~~kK 215 (217)
+...|||++||---.=.+++|-+.|
T Consensus 28 Ta~v~gy~iEGHVPa~~I~~lL~e~ 52 (70)
T PF04214_consen 28 TAVVGGYVIEGHVPADDIKRLLAEK 52 (70)
T ss_pred EEEECCEEEEccCCHHHHHHHHhcC
Confidence 4677899999966665666664443
No 16
>PF04057 Rep-A_N: Replication factor-A protein 1, N-terminal domain; InterPro: IPR007199 Replication factor-a protein 1 (RPA1) forms a multiprotein complex with RPA2 and RPA3 that binds single-stranded DNA and functions in the recognition of DNA damage for nucleotide excision repair. The complex binds to single-stranded DNA sequences participating in DNA replication in addition to those mediating transcriptional repression and activation, and stimulates the activity of cognate strand exchange protein Sep1. It cooperates with T-AG and DNA topoisomerase I to unwind template DNA containing the Simian Virus 40 origin of replication [].; GO: 0003677 DNA binding, 0006260 DNA replication, 0005634 nucleus; PDB: 1EWI_A 2B3G_A 2B29_A.
Probab=27.57 E-value=31 Score=26.78 Aligned_cols=45 Identities=24% Similarity=0.378 Sum_probs=27.7
Q ss_pred eCCceeeeEEeeceeeeeeCCcceEEeeeEeEEeecCCCchhhhcccceeceEEeecC
Q 045444 50 RGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDA 107 (217)
Q Consensus 50 rGGN~K~Ralr~~~gN~s~~se~~tkK~kI~~Vv~N~sNnelvRrn~ltKGaII~ida 107 (217)
-+++.+||++=-|=.++ +-.+. -+.=|++|..|.|.+||||+++-
T Consensus 34 ~~~~~RyR~~lSDG~~~------------~~amL-atqln~lv~~g~l~~~siirl~~ 78 (101)
T PF04057_consen 34 GGGSDRYRLVLSDGVHS------------IQAML-ATQLNHLVESGELQKGSIIRLKQ 78 (101)
T ss_dssp TTS--EEEEEEESSSEE------------EEEEE-SGGGHHHHHTTSSSTT-EEEEEE
T ss_pred CCCCceEEEEEEChHHH------------HHHHh-HHHhHHHHhcCCcccCCEEEEeE
Confidence 35778888864333322 22222 24458999999999999999975
No 17
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=26.38 E-value=34 Score=22.53 Aligned_cols=15 Identities=53% Similarity=1.105 Sum_probs=13.1
Q ss_pred ccCCcccccceeeec
Q 045444 186 SRPGQCGRADGYILE 200 (217)
Q Consensus 186 SRPGQ~GraDGyiLE 200 (217)
.-|+||-=.|||||+
T Consensus 15 n~~~~C~CPeGyIld 29 (34)
T PF09064_consen 15 NSPGQCFCPEGYILD 29 (34)
T ss_pred CCCCceeCCCceEec
Confidence 458899999999997
No 18
>cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial
Probab=25.97 E-value=1.5e+02 Score=21.20 Aligned_cols=56 Identities=20% Similarity=0.150 Sum_probs=32.7
Q ss_pred eEEEeeeeCCceeeeEEeeceeeeeeCCcceEEeeeEeEEeecCCCchhhhcccceeceEEeecCCcch
Q 045444 43 TVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFK 111 (217)
Q Consensus 43 ri~~vRvrGGN~K~Ralr~~~gN~s~~se~~tkK~kI~~Vv~N~sNnelvRrn~ltKGaII~idatPfr 111 (217)
+++.+|..|+ +-+..+.|++... -+.|+.+.++..|---..|..|++|.+..+...
T Consensus 7 wv~~~R~~g~--------~~Fi~LrD~s~~~-----~lQvv~~~~~~~~~~~~~l~~gs~V~v~G~v~~ 62 (82)
T cd04318 7 WVRSVRDSKK--------ISFIELNDGSCLK-----NLQVVVDKELTNFKEILKLSTGSSIRVEGVLVK 62 (82)
T ss_pred eEEEEEcCCc--------EEEEEEECCCCcc-----CEEEEEeCcccCHHHHhcCCCceEEEEEEEEEe
Confidence 4677777664 2344444443321 144555555444444456889999999887655
No 19
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=23.33 E-value=34 Score=24.57 Aligned_cols=7 Identities=71% Similarity=1.284 Sum_probs=6.0
Q ss_pred cceeeec
Q 045444 194 ADGYILE 200 (217)
Q Consensus 194 aDGyiLE 200 (217)
.|||||+
T Consensus 20 ~DGYiL~ 26 (63)
T PF04083_consen 20 EDGYILT 26 (63)
T ss_dssp TTSEEEE
T ss_pred CCCcEEE
Confidence 6999997
No 20
>PF09452 Mvb12: ESCRT-I subunit Mvb12; InterPro: IPR019014 The endosomal sorting complex required for transport (ESCRT) complexes play a critical role in receptor down-regulation and retroviral budding. A new component of the ESCRT-I complex was identified [], multivesicular body sorting factor of 12 kDa (Mvb12), which binds to the coiled-coil domain of the ESCRT-I subunit vacuolar protein sorting 23 (Vps23) []. ; PDB: 2P22_D.
Probab=22.52 E-value=38 Score=26.78 Aligned_cols=10 Identities=50% Similarity=1.321 Sum_probs=8.7
Q ss_pred cchHHHhhhh
Q 045444 109 PFKQWYLQHY 118 (217)
Q Consensus 109 Pfrqwye~hy 118 (217)
-|.+||+.+|
T Consensus 63 ~Fd~WY~e~y 72 (91)
T PF09452_consen 63 EFDQWYKEKY 72 (91)
T ss_dssp HHHHHHHHHS
T ss_pred hHHHHHHHHH
Confidence 3889999999
No 21
>PF10878 DUF2672: Protein of unknown function (DUF2672); InterPro: IPR022718 This group of proteins with unknown function appears to be restricted to Rickettsiaceae.
Probab=21.62 E-value=42 Score=24.99 Aligned_cols=14 Identities=50% Similarity=0.933 Sum_probs=10.8
Q ss_pred ecCcchhhHHHHHH
Q 045444 199 LEGKELEFYMKKLQ 212 (217)
Q Consensus 199 LEGkELeFY~kki~ 212 (217)
||-+.+.||++||-
T Consensus 26 le~eQ~NFYlkkIi 39 (67)
T PF10878_consen 26 LETEQLNFYLKKII 39 (67)
T ss_pred hhHHHHHHHHHHHH
Confidence 55667899999874
Done!