Query 045444
Match_columns 217
No_of_seqs 171 out of 344
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 23:31:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045444.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045444hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_I RP19, S14, YS9, 40S rib 100.0 2E-106 6E-111 692.0 12.9 200 1-215 1-200 (200)
2 2xzm_2 40S ribosomal protein S 100.0 3E-104 1E-108 679.8 12.7 200 1-216 1-208 (208)
3 2kco_A 30S ribosomal protein S 100.0 4.9E-63 1.7E-67 401.6 4.8 132 1-205 1-132 (133)
4 3j20_J 30S ribosomal protein S 100.0 9E-54 3.1E-58 345.2 8.6 103 1-105 1-103 (127)
5 2kcp_A 30S ribosomal protein S 100.0 9.1E-45 3.1E-49 281.5 4.3 93 39-204 1-93 (98)
6 1u9c_A APC35852; structural ge 57.6 5.8 0.0002 31.9 2.6 38 167-204 111-152 (224)
7 3u65_B TP33 protein; tetratric 34.8 14 0.00049 32.1 1.6 16 185-200 65-80 (328)
8 1n57_A Chaperone HSP31, protei 33.8 18 0.0006 31.2 2.0 35 168-203 168-205 (291)
9 1rw7_A YDR533CP; alpha-beta sa 30.5 28 0.00096 28.7 2.6 37 167-203 120-161 (243)
10 2b29_A Replication protein A 7 22.7 27 0.00093 27.0 1.0 21 86-106 63-83 (123)
11 3n7t_A Macrophage binding prot 22.1 40 0.0014 28.5 2.0 37 167-203 127-167 (247)
12 3kkl_A Probable chaperone prot 21.8 40 0.0014 28.3 2.0 37 167-203 120-161 (244)
13 4go6_A HCF N-terminal chain 1; 21.2 30 0.001 23.2 0.9 8 193-200 32-39 (45)
No 1
>3u5c_I RP19, S14, YS9, 40S ribosomal protein S8-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_I
Probab=100.00 E-value=1.9e-106 Score=691.96 Aligned_cols=200 Identities=60% Similarity=1.003 Sum_probs=186.7
Q ss_pred CccccCCCCCCccCCCCCccchhhhhhhcCCCCCccccCCCceEEEeeeeCCceeeeEEeeceeeeeeCCcceEEeeeEe
Q 045444 1 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRIL 80 (217)
Q Consensus 1 MgIs~~g~~kRk~TGGk~~~~rKKRK~ElGr~pa~TkiG~~~ri~~vRvrGGN~K~Ralr~~~gN~s~~se~~tkK~kI~ 80 (217)
|||||||+|+|++|||+++++|||||||||||||+|+||+ .++++|||||||+|+||||+|+|||+||++++++||+|+
T Consensus 1 Mgisrdg~~kRk~TGGkr~~~rKKRK~ElGR~pa~TkiG~-~ri~~vR~RGGN~K~Ralr~d~~N~s~~se~~tkK~kI~ 79 (200)
T 3u5c_I 1 MGISRDSRHKRSATGAKRAQFRKKRKFELGRQPANTKIGA-KRIHSVRTRGGNKKYRALRIETGNFSWASEGISKKTRIA 79 (200)
T ss_dssp -CEECCSSSSCBTTTBCCCCCSCCCGGGEECCCCCBCBSS-CCEEEEECSSSCEEEEESSBCEEEEEEGGGTEEEEEECC
T ss_pred CCccccCCcCcCCCCCccccchhhhHHhcCCCCcccccCC-cEEEEEeccCCceeeeeEeeceeEEEeCCCCeEEEEeEE
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred EEeecCCCchhhhcccceeceEEeecCCcchHHHhhhhcccccccccccccccccccccchhHHHHhhhcchHHHHHHHH
Q 045444 81 DVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKAVTKKETTEEGEGAAAAAEETKKSNHVVRKLEK 160 (217)
Q Consensus 81 ~Vv~N~sNnelvRrn~ltKGaII~idatPfrqwye~hy~~~lg~kk~~k~~~~~~~~~~~~e~~~~~~k~s~~~~kk~~~ 160 (217)
+||||||||||||||||||||||+||||||+||||+|||+|||+|+..+ +++++++|+++++||++
T Consensus 80 ~Vv~N~sNne~vRrn~LtKGaII~tDatPfrqwy~~hy~~~lg~kk~~~--------------~~~~~k~s~~~~~k~~~ 145 (200)
T 3u5c_I 80 GVVYHPSNNELVRTNTLTKAAIVQIDATPFRQWFEAHYGQTLGKKKNVK--------------EEETVAKSKNAERKWAA 145 (200)
T ss_dssp EEEECSSCHHHHHTTCBCTTCEEECCCHHHHHHHHHHSSCCSCCC-------------------------CSHHHHHHHH
T ss_pred EEEEcCCChHhhhccceecceEEEccCchhhHHHHhhhCcccccccccc--------------hhhhhhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998753 12347899999999999
Q ss_pred HhhcCCCChHHHHHhhcCeEEEEEeccCCcccccceeeecCcchhhHHHHHHhhh
Q 045444 161 RQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKK 215 (217)
Q Consensus 161 r~k~~~~~~~l~eqf~~GrllA~isSRPGQ~GraDGyiLEGkELeFY~kki~~kK 215 (217)
|+++++||++|+|||++||||||||||||||||||||||||+|||||++||++||
T Consensus 146 r~~~~~i~~~leeqf~~GrllA~isSRPGQ~GradGyiLEGkELeFy~kk~~~kk 200 (200)
T 3u5c_I 146 RAASAKIESSVESQFSAGRLYACISSRPGQSGRCDGYILEGEELAFYLRRLTAKK 200 (200)
T ss_dssp SCSSCCCCHHHHHHHHTTCCEEEECSCHHHHSCCCEEECCHHHHHHHHHHHHTTC
T ss_pred HHhhCCcCHHHHHHHhhCcEEEEEecCCCCccccceeEEccHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999999999999886
No 2
>2xzm_2 40S ribosomal protein S8; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_2
Probab=100.00 E-value=3.4e-104 Score=679.78 Aligned_cols=200 Identities=62% Similarity=1.025 Sum_probs=193.0
Q ss_pred CccccCCCCCCccCCCCCccchhhhhhhcCCCCCcccc--------CCCceEEEeeeeCCceeeeEEeeceeeeeeCCcc
Q 045444 1 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKL--------SSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEA 72 (217)
Q Consensus 1 MgIs~~g~~kRk~TGGk~~~~rKKRK~ElGr~pa~Tki--------G~~~ri~~vRvrGGN~K~Ralr~~~gN~s~~se~ 72 (217)
||||+|++|+|++|||+++++|||||||||||||+|+| |+ .++++|||||||+|+||||+|+|||+||+++
T Consensus 1 MGIsm~~~hkRk~TGGk~~~~RKKRK~ElGR~pa~Tkl~~~~~~~~G~-~ri~~VRvRGGN~K~Ralrl~~gNfsw~se~ 79 (208)
T 2xzm_2 1 MGISRDSKHKRRATGGRMPVHRKKRAFEKGRPISMTKLTTQSTTITEK-RRIRPVRVRGGHLKFRALRLCEGNFSWGSEN 79 (208)
T ss_dssp -CCCCCGGGSEETTTEECCCCSCCCGGGCCCCCCCCEECTTCSSCCSC-CEEEEEECSSSCEEEEEEEESEEEEEETTTT
T ss_pred CcccccCCcCcCCCCCccccccchhHhhcCCCccccEEecccccCCCC-cEEEEEeccCCceeeeeeecceeEEEecCCC
Confidence 99999999999999999999999999999999999999 97 9999999999999999999999999999999
Q ss_pred eEEeeeEeEEeecCCCchhhhcccceeceEEeecCCcchHHHhhhhcccccccccccccccccccccchhHHHHhhhcch
Q 045444 73 VTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKAVTKKETTEEGEGAAAAAEETKKSN 152 (217)
Q Consensus 73 ~tkK~kI~~Vv~N~sNnelvRrn~ltKGaII~idatPfrqwye~hy~~~lg~kk~~k~~~~~~~~~~~~e~~~~~~k~s~ 152 (217)
+++||+|++||||||||||||||||||||||+||||||+||||+|||+|||+|+.+ ++++++++|+
T Consensus 80 ~trK~kIl~VvyN~sNnelvRtntLtKgAIV~tDa~Pfrqwye~hy~~~lg~kk~~--------------~~~~~~k~s~ 145 (208)
T 2xzm_2 80 ITRKTKILDVKYNATNNELVRTKTLVKNSIVEIDSTPFREWYKLHYGIDLGLKKDR--------------TVLGNKEKSR 145 (208)
T ss_dssp EEEEEEEEEECCCSSCSHHHHTTCCCTTCEEEEESHHHHHHHHHHHSBCCSSGGGC--------------BCCCSCCSST
T ss_pred eEEEEEEEEEEecCcchHHHhhcccccccEEEccCchhHHHHHHhcCccccccccc--------------ccccchhhhH
Confidence 99999999999999999999999999999999999999999999999999999864 1345678999
Q ss_pred HHHHHHHHHhhcCCCChHHHHHhhcCeEEEEEeccCCcccccceeeecCcchhhHHHHHHhhhC
Q 045444 153 HVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKG 216 (217)
Q Consensus 153 ~~~kk~~~r~k~~~~~~~l~eqf~~GrllA~isSRPGQ~GraDGyiLEGkELeFY~kki~~kK~ 216 (217)
++++|| +|++++++||+|+|||++||||||||||||||||||||||||+|||||++||++||.
T Consensus 146 ~~~kk~-~r~~~~~~~~~l~eqf~~GrllA~isSRPGQ~GradGyiLEGkELeFY~~k~~~kk~ 208 (208)
T 2xzm_2 146 HVQKRV-KRTKAQALEKNIEEQFVSQRILACITSRPGQSGRADGYILEGKELEFYIRKLQSKKK 208 (208)
T ss_dssp THHHHH-HHTTTCCCCHHHHHHHHHSEEEEEECSCHHHHSCCEEEECCHHHHHHHHHHHHHHHC
T ss_pred HHHHHH-HHhhhccccHHHHHHHhhCcEEEEEecCCCCcccccEEEEechhHHHHHHHHHhccC
Confidence 999999 999999999999999999999999999999999999999999999999999999874
No 3
>2kco_A 30S ribosomal protein S8E; ribosomal protein of unknown function, ribonucleoprotein, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus P2}
Probab=100.00 E-value=4.9e-63 Score=401.59 Aligned_cols=132 Identities=33% Similarity=0.511 Sum_probs=128.1
Q ss_pred CccccCCCCCCccCCCCCccchhhhhhhcCCCCCccccCCCceEEEeeeeCCceeeeEEeeceeeeeeCCcceEEeeeEe
Q 045444 1 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRIL 80 (217)
Q Consensus 1 MgIs~~g~~kRk~TGGk~~~~rKKRK~ElGr~pa~TkiG~~~ri~~vRvrGGN~K~Ralr~~~gN~s~~se~~tkK~kI~ 80 (217)
||| |||+|+|++|||+++++|||||||||||||+|+||++.++++|||||||+|+||||+++|||+||+++++++++|+
T Consensus 1 M~i-~~g~~krk~TGgk~~~~rkKRk~ElGr~pa~Tkig~~~~~~~vR~rGGN~K~r~lr~~~~nv~~~~~~~t~k~~I~ 79 (133)
T 2kco_A 1 MGF-YQGPDNRKITGGLKGKHRDKRKYEIGNPPTFTTLSAEDIRIKDRTLGGNFKVRLKYTTTANVLDPATNTAKKVKIL 79 (133)
T ss_dssp CCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSHHHHHHHHHTCCCCCCCCCCCCCEEEEEETTTTEEEEEEEE
T ss_pred CCc-ccCCCcccCCCCccccccchhhhhcCCCCcccEecCceEEEEEeccCCceeeeEeeeeeEEEEecccCeEEEEEEE
Confidence 999 9999999999999999999999999999999999943999999999999999999999999999999999999999
Q ss_pred EEeecCCCchhhhcccceeceEEeecCCcchHHHhhhhcccccccccccccccccccccchhHHHHhhhcchHHHHHHHH
Q 045444 81 DVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKAVTKKETTEEGEGAAAAAEETKKSNHVVRKLEK 160 (217)
Q Consensus 81 ~Vv~N~sNnelvRrn~ltKGaII~idatPfrqwye~hy~~~lg~kk~~k~~~~~~~~~~~~e~~~~~~k~s~~~~kk~~~ 160 (217)
+|+||||||||||||||||||||+|| ||
T Consensus 80 ~Vv~Npsn~~yvR~n~itKGaII~~~---------------lG------------------------------------- 107 (133)
T 2kco_A 80 EILETPANKELARRGIIIRGAKIRTE---------------AG------------------------------------- 107 (133)
T ss_dssp EECSCCTTHHHHTTTCCCTTCEEEES---------------SS-------------------------------------
T ss_pred EEEECCCChhheecccEeeeeEEEEe---------------Cc-------------------------------------
Confidence 99999999999999999999999999 11
Q ss_pred HhhcCCCChHHHHHhhcCeEEEEEeccCCcccccceeeecCcchh
Q 045444 161 RQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELE 205 (217)
Q Consensus 161 r~k~~~~~~~l~eqf~~GrllA~isSRPGQ~GraDGyiLEGkELe 205 (217)
||||+|||||||+||||||||+||+
T Consensus 108 --------------------~A~VtSRPGQdG~vnavlleg~el~ 132 (133)
T 2kco_A 108 --------------------LAVVTSRPGQDGVINAVLLKNESQR 132 (133)
T ss_dssp --------------------EEEEEEEECTTSBEEEEECSSCCCC
T ss_pred --------------------eEEEecCCCCcceEEEEEEeccccc
Confidence 8999999999999999999999997
No 4
>3j20_J 30S ribosomal protein S8E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=9e-54 Score=345.23 Aligned_cols=103 Identities=34% Similarity=0.484 Sum_probs=101.5
Q ss_pred CccccCCCCCCccCCCCCccchhhhhhhcCCCCCccccCCCceEEEeeeeCCceeeeEEeeceeeeeeCCcceEEeeeEe
Q 045444 1 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRIL 80 (217)
Q Consensus 1 MgIs~~g~~kRk~TGGk~~~~rKKRK~ElGr~pa~TkiG~~~ri~~vRvrGGN~K~Ralr~~~gN~s~~se~~tkK~kI~ 80 (217)
||| |||+|+|++|||+++++|||||||||||||+|+||++.++++|||||||+|+||||+|+|||+| +++++++++|+
T Consensus 1 Mgi-~qg~~krk~TGGk~~~~rkKRK~ElGr~pa~T~ig~~~r~~~vR~rGGN~K~ralr~~~aNvs~-s~~~t~k~~Ii 78 (127)
T 3j20_J 1 MAI-WQGRSLKKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNRKVRLTAAAYANVFD-KSGKGRKVRII 78 (127)
T ss_dssp CBC-CCSSSSBCTTSCBCCCCSCCCGGGCBCCCCCCEECSSCEEEEEECTTSCEEEEEEEESBCCCCC-SSCCCCCCBBC
T ss_pred Ccc-ccCCCcccCCCCcccccccchhhhcCCCccccEeCCceEEEEEEccCCceEEEEEEeccceEEe-ecCCEEEEEEE
Confidence 999 6999999999999999999999999999999999998899999999999999999999999999 99999999999
Q ss_pred EEeecCCCchhhhcccceeceEEee
Q 045444 81 DVVYNASNNELVRTQTLVKSAIVQV 105 (217)
Q Consensus 81 ~Vv~N~sNnelvRrn~ltKGaII~i 105 (217)
+|+||||||||||||||||||||+|
T Consensus 79 ~Vv~NpsN~~yvR~n~itKGaIIet 103 (127)
T 3j20_J 79 RVIENPANRQFARRNIITKGAIIET 103 (127)
T ss_dssp CCCCCSSCSHHHHHTCCCSSCEEEB
T ss_pred EEEECCCChhheEeccEecceEEEE
Confidence 9999999999999999999999994
No 5
>2kcp_A 30S ribosomal protein S8E; RPS8E, beta, NESG, ribonucleoprotein, structural genomics, PSI-2; NMR {Methanothermobacter thermautotrophicusstr} PDB: 2kcy_A
Probab=100.00 E-value=9.1e-45 Score=281.52 Aligned_cols=93 Identities=31% Similarity=0.422 Sum_probs=89.2
Q ss_pred CCCceEEEeeeeCCceeeeEEeeceeeeeeCCcceEEeeeEeEEeecCCCchhhhcccceeceEEeecCCcchHHHhhhh
Q 045444 39 SSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHY 118 (217)
Q Consensus 39 G~~~ri~~vRvrGGN~K~Ralr~~~gN~s~~se~~tkK~kI~~Vv~N~sNnelvRrn~ltKGaII~idatPfrqwye~hy 118 (217)
|+ ++++.||+||||+|+||||+++|||+||+++++++++|++|+||||||+|||||||||||||+||
T Consensus 1 g~-~r~~~vR~rGGN~K~Ralr~~~aNv~~~~~~~t~k~~Ii~Vv~NpsN~~yvR~n~ltKGaII~~d------------ 67 (98)
T 2kcp_A 1 GD-RRVRLIRTRGGNTKVRLASDTRINVVDPETGKVEIAEIRNVVENTANPHFVRRNIITRGAVVETN------------ 67 (98)
T ss_dssp CC-CCCCCCCCCCCCCCCCTTSCCCEEEECTTTCCEEEECEEESSCSCSSCTTCCSSCCCTTCEEEES------------
T ss_pred CC-cEEEEEEccCCceEEEEEEeeeEEEEecccCeEEEEEEEEEEECCCChHHeecccEEeeeEEEec------------
Confidence 55 88999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccccccccccccccccccchhHHHHhhhcchHHHHHHHHHhhcCCCChHHHHHhhcCeEEEEEeccCCcccccceee
Q 045444 119 GVDIGRKKKAVTKKETTEEGEGAAAAAEETKKSNHVVRKLEKRQKDRTLDPHIEEQFGAGRLLACISSRPGQCGRADGYI 198 (217)
Q Consensus 119 ~~~lg~kk~~k~~~~~~~~~~~~e~~~~~~k~s~~~~kk~~~r~k~~~~~~~l~eqf~~GrllA~isSRPGQ~GraDGyi 198 (217)
.|+ |||+|||||||+|||||
T Consensus 68 ----------------------------------------------------------~Gk--A~VTSRPGQdG~vnavl 87 (98)
T 2kcp_A 68 ----------------------------------------------------------LGN--VRVTSRPGQDGVINGVL 87 (98)
T ss_dssp ----------------------------------------------------------SSE--EEECSCTTGGGSCEEEE
T ss_pred ----------------------------------------------------------CcE--EEEecCCCCccEEEEEE
Confidence 466 89999999999999999
Q ss_pred ecCcch
Q 045444 199 LEGKEL 204 (217)
Q Consensus 199 LEGkEL 204 (217)
|||+|-
T Consensus 88 L~g~e~ 93 (98)
T 2kcp_A 88 IRELEH 93 (98)
T ss_dssp ECCSCC
T ss_pred Eecccc
Confidence 999984
No 6
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=57.62 E-value=5.8 Score=31.92 Aligned_cols=38 Identities=26% Similarity=0.446 Sum_probs=29.2
Q ss_pred CChHHHHHhhcCeEEEEEeccC---Ccccccce-eeecCcch
Q 045444 167 LDPHIEEQFGAGRLLACISSRP---GQCGRADG-YILEGKEL 204 (217)
Q Consensus 167 ~~~~l~eqf~~GrllA~isSRP---GQ~GraDG-yiLEGkEL 204 (217)
+-..|.+++.+|+++|.|++=| .+.|-.|| |||+|+..
T Consensus 111 l~~~l~~~~~~~k~iaaiC~G~~~La~ag~~~g~~lL~Gr~~ 152 (224)
T 1u9c_A 111 LQYVLQQFAEDGRIIAAVCHGPSGLVNATYKDGTPIVKGKTV 152 (224)
T ss_dssp HHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTSCBTTTTCEE
T ss_pred HHHHHHHHHHCCCEEEEEChHHHHHHHccccCCCceecCcEE
Confidence 3356888999999999999977 56676667 58888653
No 7
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=34.82 E-value=14 Score=32.13 Aligned_cols=16 Identities=50% Similarity=0.819 Sum_probs=13.7
Q ss_pred eccCCcccccceeeec
Q 045444 185 SSRPGQCGRADGYILE 200 (217)
Q Consensus 185 sSRPGQ~GraDGyiLE 200 (217)
.+||||.|-+|..+.-
T Consensus 65 ~~~~~~~G~id~~~~~ 80 (328)
T 3u65_B 65 SSRPGQAAPLDGAVFS 80 (328)
T ss_dssp CSSTTSCCSCSEEEEC
T ss_pred hhccCCCCceeEEEec
Confidence 4699999999998764
No 8
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=33.84 E-value=18 Score=31.19 Aligned_cols=35 Identities=14% Similarity=0.259 Sum_probs=26.6
Q ss_pred ChHHHHHhhcCeEEEEEeccCC---cccccceeeecCcc
Q 045444 168 DPHIEEQFGAGRLLACISSRPG---QCGRADGYILEGKE 203 (217)
Q Consensus 168 ~~~l~eqf~~GrllA~isSRPG---Q~GraDGyiLEGkE 203 (217)
-..|.++.++|+++|.||.=|- ..|..|| ||+|+.
T Consensus 168 ~~~l~~~~~~gk~VaaIC~Gp~~La~a~~~~G-LL~Gr~ 205 (291)
T 1n57_A 168 AAALQWAIKNDRFVISLCHGPAAFLALRHGDN-PLNGYS 205 (291)
T ss_dssp HHHHHHHHHTTCEEEEETTGGGGGGGGTTSCC-TTTTCE
T ss_pred HHHHHHHHHcCCEEEEECccHHHHHhhcccCc-cCCCCE
Confidence 3468888999999999999884 4454557 788754
No 9
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=30.49 E-value=28 Score=28.67 Aligned_cols=37 Identities=24% Similarity=0.439 Sum_probs=25.9
Q ss_pred CChHHHHHhhcCeEEEEEeccC---Cccccc-ce-eeecCcc
Q 045444 167 LDPHIEEQFGAGRLLACISSRP---GQCGRA-DG-YILEGKE 203 (217)
Q Consensus 167 ~~~~l~eqf~~GrllA~isSRP---GQ~Gra-DG-yiLEGkE 203 (217)
+-..|.++..+|+++|.||+=| ...|.. || +||+|+.
T Consensus 120 l~~~l~~~~~~gk~vaaIC~G~~~La~ag~~~~g~~lL~G~~ 161 (243)
T 1rw7_A 120 LQDIASEIYANGGVVAAVCHGPAIFDGLTDKKTGRPLIEGKS 161 (243)
T ss_dssp HHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTTSSBTTTTCE
T ss_pred HHHHHHHHHHcCCEEEEECCCHHHHHhcCcccCCceeeCCcE
Confidence 3356888899999999999977 344522 33 4777743
No 10
>2b29_A Replication protein A 70 kDa DNA-binding subunit; 1.60A {Homo sapiens} SCOP: b.40.4.3 PDB: 2b3g_A 1ewi_A
Probab=22.75 E-value=27 Score=26.96 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=18.7
Q ss_pred CCCchhhhcccceeceEEeec
Q 045444 86 ASNNELVRTQTLVKSAIVQVD 106 (217)
Q Consensus 86 ~sNnelvRrn~ltKGaII~id 106 (217)
..=|++|..|.|.+||||++.
T Consensus 63 tqln~~v~~g~l~~~sIirl~ 83 (123)
T 2b29_A 63 TQLNPLVEEEQLSSNCVCQIH 83 (123)
T ss_dssp GGGHHHHHTTSSCTTCEEEEE
T ss_pred HHHHHHHhcCCccCCCEEEEE
Confidence 455899999999999999994
No 11
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=22.13 E-value=40 Score=28.48 Aligned_cols=37 Identities=14% Similarity=0.357 Sum_probs=26.2
Q ss_pred CChHHHHHhhcCeEEEEEeccCCccccc---ce-eeecCcc
Q 045444 167 LDPHIEEQFGAGRLLACISSRPGQCGRA---DG-YILEGKE 203 (217)
Q Consensus 167 ~~~~l~eqf~~GrllA~isSRPGQ~Gra---DG-yiLEGkE 203 (217)
+-..|.+++.+|+++|.||.-|-=-..+ || .||+|+.
T Consensus 127 l~~~l~~~~~~gk~iaaIC~Gp~~La~a~~~~g~gll~G~~ 167 (247)
T 3n7t_A 127 LQNIAQDIYKRGGVIGAVCHGPAMLPGIHDENGDSVIKDKT 167 (247)
T ss_dssp HHHHHHHHHHTTCEEEEETTGGGGGGGCBCTTSSBTTTTCE
T ss_pred HHHHHHHHHHcCCEEEEEChHHHHHHHhhcccCCccccCce
Confidence 3456888999999999999987433333 44 5677754
No 12
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=21.77 E-value=40 Score=28.27 Aligned_cols=37 Identities=22% Similarity=0.321 Sum_probs=27.3
Q ss_pred CChHHHHHhhcCeEEEEEeccCCccccc----ce-eeecCcc
Q 045444 167 LDPHIEEQFGAGRLLACISSRPGQCGRA----DG-YILEGKE 203 (217)
Q Consensus 167 ~~~~l~eqf~~GrllA~isSRPGQ~Gra----DG-yiLEGkE 203 (217)
+-..|.+++.+|+++|.||.-|-=-..+ || .||+|+.
T Consensus 120 l~~~l~~~~~~gk~iaaIC~G~~~La~a~~~~~g~gll~G~~ 161 (244)
T 3kkl_A 120 LQDIASKIYANGGVIAAICHGPLLFDGLIDIKTTRPLIEGKA 161 (244)
T ss_dssp HHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTTSSBTTTTCE
T ss_pred HHHHHHHHHHcCCEEEEECHHHHHHHHhhccccCCceeCCce
Confidence 3356889999999999999988555555 33 5677754
No 13
>4go6_A HCF N-terminal chain 1; tandem fibronectin repeat, protein interaction, transcriptio protein binding; 2.70A {Homo sapiens}
Probab=21.19 E-value=30 Score=23.16 Aligned_cols=8 Identities=50% Similarity=0.983 Sum_probs=5.6
Q ss_pred ccceeeec
Q 045444 193 RADGYILE 200 (217)
Q Consensus 193 raDGyiLE 200 (217)
-||+|||+
T Consensus 32 tA~~YiLQ 39 (45)
T 4go6_A 32 TADSYLLQ 39 (45)
T ss_dssp TCSEEEEE
T ss_pred chheeEEE
Confidence 47777776
Done!