Query 045444
Match_columns 217
No_of_seqs 171 out of 344
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 23:31:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045444.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045444hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iufa1 a.4.1.7 (A:-2-75) Ars- 53.7 2 0.00014 30.2 1.0 15 110-124 36-50 (78)
2 d1qvwa_ c.23.16.2 (A:) Hypothe 26.5 16 0.0012 28.7 2.5 37 169-205 121-162 (236)
3 d1gdna_ b.47.1.2 (A:) Trypsin( 23.7 15 0.0011 26.4 1.7 15 103-117 209-223 (224)
4 d1g9pa_ g.3.6.2 (A:) Atracotox 22.9 17 0.0012 22.3 1.5 18 182-199 28-45 (45)
5 d2b3ga1 b.40.4.3 (A:3-114) Rep 22.5 53 0.0038 23.3 4.5 51 45-107 29-79 (112)
6 d1iica1 d.108.1.2 (A:34-218) N 21.0 14 0.0011 28.8 1.1 30 177-207 109-138 (185)
7 d1dx5i2 g.3.11.1 (I:388-422) T 20.4 16 0.0012 21.7 1.0 16 186-201 15-30 (35)
8 d2zjra2 b.40.4.5 (A:33-127) N- 19.5 16 0.0011 26.0 0.9 39 45-87 17-55 (95)
9 d1ltqa1 c.108.1.9 (A:153-301) 17.7 48 0.0035 22.2 3.3 22 170-191 44-65 (149)
10 d1wo8a1 c.24.1.2 (A:1-126) Met 16.7 18 0.0013 26.0 0.7 33 168-200 61-96 (126)
No 1
>d1iufa1 a.4.1.7 (A:-2-75) Ars-binding protein 1, ABP1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=53.69 E-value=2 Score=30.18 Aligned_cols=15 Identities=27% Similarity=0.924 Sum_probs=13.0
Q ss_pred chHHHhhhhcccccc
Q 045444 110 FKQWYLQHYGVDIGR 124 (217)
Q Consensus 110 frqwye~hy~~~lg~ 124 (217)
..+|||.+|+.+|..
T Consensus 36 l~~WFe~~y~q~Isq 50 (78)
T d1iufa1 36 LIEWFREKFGKDISQ 50 (78)
T ss_dssp HHHHHHHHHSSCCSS
T ss_pred HHHHHHHHHCCcchH
Confidence 569999999999874
No 2
>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=26.46 E-value=16 Score=28.73 Aligned_cols=37 Identities=22% Similarity=0.469 Sum_probs=27.8
Q ss_pred hHHHHHhhcCeEEEEEeccCCc----ccccce-eeecCcchh
Q 045444 169 PHIEEQFGAGRLLACISSRPGQ----CGRADG-YILEGKELE 205 (217)
Q Consensus 169 ~~l~eqf~~GrllA~isSRPGQ----~GraDG-yiLEGkELe 205 (217)
.+|.+.+.+|+++|.||.=|-= +...|| +||.|+.+-
T Consensus 121 ~li~~~~~~gk~vaAIChGp~~L~~~~~~~~g~~ll~Gk~vT 162 (236)
T d1qvwa_ 121 DIASEIYANGGVVAAVCHGPAMFDGLTDKKTGRPLIEGKSIT 162 (236)
T ss_dssp HHHHHHHHTTCEEEEETTGGGGGTTCBCTTTCSBTTTTCEEC
T ss_pred HHHHHHHhcCCeEEEehhhHHHHHHHhhcccccccccCceec
Confidence 4578899999999999998842 244566 788887653
No 3
>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]}
Probab=23.72 E-value=15 Score=26.39 Aligned_cols=15 Identities=7% Similarity=0.109 Sum_probs=13.8
Q ss_pred EeecCCcchHHHhhh
Q 045444 103 VQVDAAPFKQWYLQH 117 (217)
Q Consensus 103 I~idatPfrqwye~h 117 (217)
|-|+..+|.+|.|+|
T Consensus 209 vyt~v~~y~~WIe~~ 223 (224)
T d1gdna_ 209 VYASVGALRSFIDTY 223 (224)
T ss_dssp EEEETTTTHHHHHHH
T ss_pred EEEEHHHHHHHHHHC
Confidence 689999999999997
No 4
>d1g9pa_ g.3.6.2 (A:) Atracotoxin-hv2a {Funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=22.89 E-value=17 Score=22.34 Aligned_cols=18 Identities=50% Similarity=0.798 Sum_probs=14.1
Q ss_pred EEEeccCCcccccceeee
Q 045444 182 ACISSRPGQCGRADGYIL 199 (217)
Q Consensus 182 A~isSRPGQ~GraDGyiL 199 (217)
.|+||-||-.|-.-|-||
T Consensus 28 scvssgpglvggilggil 45 (45)
T d1g9pa_ 28 SCVSSGPGLVGGILGGIL 45 (45)
T ss_dssp EEECCCSSCSSCSSCCCC
T ss_pred ceeccCCchhhheecccC
Confidence 499999999987666554
No 5
>d2b3ga1 b.40.4.3 (A:3-114) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.51 E-value=53 Score=23.27 Aligned_cols=51 Identities=22% Similarity=0.248 Sum_probs=31.3
Q ss_pred EEeeeeCCceeeeEEeeceeeeeeCCcceEEeeeEeEEeecCCCchhhhcccceeceEEeecC
Q 045444 45 RRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDA 107 (217)
Q Consensus 45 ~~vRvrGGN~K~Ralr~~~gN~s~~se~~tkK~kI~~Vv~N~sNnelvRrn~ltKGaII~ida 107 (217)
+.+-.-++..+||++=-|=-|+. ...+--..=|++|..|.|.+||||++.-
T Consensus 29 k~i~~~~~~~RyR~~lSDG~~~~------------~~amLatqln~~v~~g~l~~~sii~l~~ 79 (112)
T d2b3ga1 29 RPITTGNSPPRYRLLMSDGLNTL------------SSFMLATQLNPLVEEEQLSSNCVCQIHR 79 (112)
T ss_dssp EEEC---CCCEEEEEEECSSEEE------------EEEEECGGGHHHHHTTSSCTTCEEEEEE
T ss_pred EeccCCCCcceEEEEEECcchhh------------hhhhhhhhhhhhhhcCCccCCCEEEEeE
Confidence 33333355667888643333321 1233334558999999999999999875
No 6
>d1iica1 d.108.1.2 (A:34-218) N-myristoyl transferase, NMT {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.96 E-value=14 Score=28.78 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=20.9
Q ss_pred cCeEEEEEeccCCcccccceeeecCcchhhH
Q 045444 177 AGRLLACISSRPGQCGRADGYILEGKELEFY 207 (217)
Q Consensus 177 ~GrllA~isSRPGQ~GraDGyiLEGkELeFY 207 (217)
+++|+|+||+||=.+ +..|.++.=-|..|.
T Consensus 109 ~~KLvg~Is~~P~~i-~i~~~~~~~~~VnFL 138 (185)
T d1iica1 109 TQKLVAFISAIPVTL-GVRGKQVPSVEINFL 138 (185)
T ss_dssp TCCEEEEEEEEEEEE-EETTEEEEEEEEEEE
T ss_pred CCcEEEEEeeeEEEE-EEcCeEEEEEEEEEE
Confidence 688999999999887 444445544445553
No 7
>d1dx5i2 g.3.11.1 (I:388-422) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.38 E-value=16 Score=21.66 Aligned_cols=16 Identities=31% Similarity=0.789 Sum_probs=13.2
Q ss_pred ccCCcccccceeeecC
Q 045444 186 SRPGQCGRADGYILEG 201 (217)
Q Consensus 186 SRPGQ~GraDGyiLEG 201 (217)
+-|+-|-=.|||||+-
T Consensus 15 ~~p~~C~CPeGyIlde 30 (35)
T d1dx5i2 15 NTQASCECPEGYILDD 30 (35)
T ss_dssp TSTTCEECCTTEEEET
T ss_pred CCCCcccCCCceEecc
Confidence 5688888899999973
No 8
>d2zjra2 b.40.4.5 (A:33-127) N-terminal domain of ribosomal protein L2 {Deinococcus radiodurans [TaxId: 1299]}
Probab=19.50 E-value=16 Score=25.97 Aligned_cols=39 Identities=15% Similarity=0.165 Sum_probs=25.9
Q ss_pred EEeeeeCCceeeeEEeeceeeeeeCCcceEEeeeEeEEeecCC
Q 045444 45 RRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNAS 87 (217)
Q Consensus 45 ~~vRvrGGN~K~Ralr~~~gN~s~~se~~tkK~kI~~Vv~N~s 87 (217)
-++|.|||-.|.+....|+--- .. ....+.|+++.|.|.
T Consensus 17 IT~rhrGGGhKr~yR~IDf~R~--~~--~~~~~~V~~IeYDPn 55 (95)
T d2zjra2 17 ITSRFIGGGHKRLYRIIDFKRR--DK--SGVNAKVAAIEYDPN 55 (95)
T ss_dssp BCSCSCCCCCCCBCCCBCCSCC--TT--TTCEEEEEEEECCTT
T ss_pred EEEEEECCcccEEEEEeeehhh--cc--CCCCEEEEEEEEcCC
Confidence 4789999998876666665421 11 123568888888886
No 9
>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]}
Probab=17.69 E-value=48 Score=22.19 Aligned_cols=22 Identities=14% Similarity=0.022 Sum_probs=17.6
Q ss_pred HHHHHhhcCeEEEEEeccCCcc
Q 045444 170 HIEEQFGAGRLLACISSRPGQC 191 (217)
Q Consensus 170 ~l~eqf~~GrllA~isSRPGQ~ 191 (217)
+|....++|..++.+|+||+.+
T Consensus 44 ~l~~l~~~G~~Iii~T~R~~~~ 65 (149)
T d1ltqa1 44 LSKMYALMGYQIVVVSGRESGT 65 (149)
T ss_dssp HHHHHHHTTCEEEEEECSCCCC
T ss_pred HHHHHHhccCeEEEEecCcHHH
Confidence 4566667899999999999754
No 10
>d1wo8a1 c.24.1.2 (A:1-126) Methylglyoxal synthase, MgsA {Thermus thermophilus [TaxId: 274]}
Probab=16.68 E-value=18 Score=25.96 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=24.5
Q ss_pred ChHHHHHhhcCeEEEEE---eccCCcccccceeeec
Q 045444 168 DPHIEEQFGAGRLLACI---SSRPGQCGRADGYILE 200 (217)
Q Consensus 168 ~~~l~eqf~~GrllA~i---sSRPGQ~GraDGyiLE 200 (217)
+|.+.+.+.+|.+=.+| ..--++..+.|||.|-
T Consensus 61 ~~~i~d~I~~g~IdlVIn~~~~~~~~~~~~D~~~iR 96 (126)
T d1wo8a1 61 DLQIGARVAEGKVLAVVFLQDPLTAKPHEPDVQALM 96 (126)
T ss_dssp HHHHHHHHHTTCEEEEEEECCTTSCCTTHHHHHHHH
T ss_pred CCCHHHHHHcCCccEEEEecCCCCCCcccccHHHHH
Confidence 47799999999998888 3333455688998763
Done!