Your job contains 1 sequence.
>045445
PLFLSCNYNDNCSSTSSSSKKNYFELTDDEQFRECEMDTYKSSGPGGQHRNKRESAVRLK
HVPTASSVNLDAYLPPPQLLQILPPKFTIRCSEVGPQIRPNNPKFALLDLIFAVEGSVSE
AAKFLSLL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 045445
(128 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2006897 - symbol:AT1G33330 species:3702 "Arabi... 154 5.1e-11 1
UNIPROTKB|Q74EJ1 - symbol:GSU0971 "Hydrolase, putative" s... 112 1.0e-06 1
TIGR_CMR|GSU_0971 - symbol:GSU_0971 "peptidyl-tRNA hydrol... 112 1.0e-06 1
TIGR_CMR|GSU_2278 - symbol:GSU_2278 "peptide chain releas... 109 1.4e-05 1
TIGR_CMR|APH_0479 - symbol:APH_0479 "peptide chain releas... 109 1.4e-05 1
TIGR_CMR|ECH_0705 - symbol:ECH_0705 "peptide chain releas... 108 1.7e-05 1
TIGR_CMR|GSU_3104 - symbol:GSU_3104 "peptide chain releas... 106 2.7e-05 1
DICTYBASE|DDB_G0288835 - symbol:prfB "class I peptide cha... 107 2.8e-05 1
TIGR_CMR|SO_3833 - symbol:SO_3833 "peptide chain release ... 106 2.8e-05 1
TIGR_CMR|NSE_0604 - symbol:NSE_0604 "peptide chain releas... 106 2.9e-05 1
TIGR_CMR|CHY_0163 - symbol:CHY_0163 "peptide chain releas... 106 2.9e-05 1
TIGR_CMR|CJE_1628 - symbol:CJE_1628 "peptide chain releas... 105 3.7e-05 1
TIGR_CMR|SPO_2585 - symbol:SPO_2585 "peptide chain releas... 104 4.9e-05 1
TAIR|locus:2041409 - symbol:AT2G47020 species:3702 "Arabi... 104 5.7e-05 1
TIGR_CMR|CPS_3552 - symbol:CPS_3552 "peptide chain releas... 103 6.0e-05 1
TIGR_CMR|APH_0420 - symbol:APH_0420 "peptide chain releas... 102 7.6e-05 1
UNIPROTKB|P07012 - symbol:prfB species:83333 "Escherichia... 102 7.8e-05 1
UNIPROTKB|O75570 - symbol:MTRF1 "Peptide chain release fa... 102 0.00011 1
UNIPROTKB|B4DG01 - symbol:MTRF1 "Peptide chain release fa... 102 0.00011 1
ZFIN|ZDB-GENE-050220-8 - symbol:zgc:113104 "zgc:113104" s... 97 0.00012 1
TIGR_CMR|CBU_1965 - symbol:CBU_1965 "peptide chain releas... 100 0.00013 1
TIGR_CMR|NSE_0406 - symbol:NSE_0406 "peptide chain releas... 100 0.00013 1
CGD|CAL0003702 - symbol:orf19.1303 species:5476 "Candida ... 100 0.00014 1
POMBASE|SPAC2F7.17 - symbol:SPAC2F7.17 "mitochondrial pep... 100 0.00015 1
UNIPROTKB|Q5TF45 - symbol:MTRF1L "Peptide chain release f... 91 0.00020 1
TIGR_CMR|ECH_0597 - symbol:ECH_0597 "peptide chain releas... 98 0.00021 1
UNIPROTKB|Q9KQ25 - symbol:prfA "Peptide chain release fac... 98 0.00021 1
TIGR_CMR|VC_2179 - symbol:VC_2179 "peptide chain release ... 98 0.00021 1
UNIPROTKB|E1BXF8 - symbol:MTRF1 "Uncharacterized protein"... 98 0.00026 1
TIGR_CMR|BA_5572 - symbol:BA_5572 "peptide chain release ... 97 0.00026 1
UNIPROTKB|P0A7I0 - symbol:prfA "peptide chain release fac... 97 0.00027 1
UNIPROTKB|P66026 - symbol:prfB "Peptide chain release fac... 97 0.00028 1
TIGR_CMR|CHY_2563 - symbol:CHY_2563 "peptide chain releas... 96 0.00034 1
UNIPROTKB|F1RJ87 - symbol:MTRF1 "Uncharacterized protein"... 97 0.00037 1
ASPGD|ASPL0000035902 - symbol:AN3462 species:162425 "Emer... 96 0.00043 1
UNIPROTKB|E2RAT2 - symbol:MTRF1 "Uncharacterized protein"... 96 0.00046 1
UNIPROTKB|Q3MHI7 - symbol:MTRF1 "Peptide chain release fa... 96 0.00047 1
DICTYBASE|DDB_G0283175 - symbol:prfA "peptide chain relea... 95 0.00057 1
MGI|MGI:2384815 - symbol:Mtrf1 "mitochondrial translation... 95 0.00060 1
TIGR_CMR|DET_1210 - symbol:DET_1210 "peptide chain releas... 80 0.00065 2
>TAIR|locus:2006897 [details] [associations]
symbol:AT1G33330 species:3702 "Arabidopsis thaliana"
[GO:0003747 "translation release factor activity" evidence=IEA;ISS]
[GO:0006415 "translational termination" evidence=IEA;ISS]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0006783 "heme
biosynthetic process" evidence=RCA] InterPro:IPR000352 Pfam:PF00472
InterPro:IPR014720 EMBL:CP002684 GO:GO:0009507 Gene3D:3.30.160.20
GO:GO:0003747 EMBL:AC027035 EMBL:BT006129 EMBL:AK117494
IPI:IPI00545134 RefSeq:NP_174601.2 UniGene:At.28050
ProteinModelPortal:Q9C875 SMR:Q9C875 STRING:Q9C875 PRIDE:Q9C875
EnsemblPlants:AT1G33330.1 GeneID:840227 KEGG:ath:AT1G33330
TAIR:At1g33330 HOGENOM:HOG000152202 InParanoid:Q9C875 OMA:KSTIRTS
PhylomeDB:Q9C875 ProtClustDB:CLSN2680351 ArrayExpress:Q9C875
Genevestigator:Q9C875 Uniprot:Q9C875
Length = 257
Score = 154 (59.3 bits), Expect = 5.1e-11, P = 5.1e-11
Identities = 25/40 (62%), Positives = 35/40 (87%)
Query: 25 ELTDDEQFRECEMDTYKSSGPGGQHRNKRESAVRLKHVPT 64
+ TD+E ++C ++T++ SGPGGQHRNKR+SAVRLKH+PT
Sbjct: 88 KFTDEELMKQCRLETFRVSGPGGQHRNKRDSAVRLKHLPT 127
Score = 123 (48.4 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 34/88 (38%), Positives = 49/88 (55%)
Query: 48 QHRNKRESAVRLKH---VPTASSVNLDAYXXXXXXXXXXXXKFTIRCSEVGPQIRPNNPK 104
QH+N+ + RL+ + + V+++AY K TIR S G QI PNNPK
Sbjct: 139 QHKNRASALNRLRTLLAIKVRNKVDIEAYAPPPELLQILPPKSTIRTSS-GSQIGPNNPK 197
Query: 105 F-----ALLDLIFAVEGSVSEAAKFLSL 127
F ALLD+I A +GS++++AK L L
Sbjct: 198 FVPGMQALLDVISASDGSIADSAKLLGL 225
>UNIPROTKB|Q74EJ1 [details] [associations]
symbol:GSU0971 "Hydrolase, putative" species:243231
"Geobacter sulfurreducens PCA" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000352 Pfam:PF00472 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0016787 EMBL:AE017180
GenomeReviews:AE017180_GR HOGENOM:HOG000244440 GO:GO:0003747
RefSeq:NP_952025.1 ProteinModelPortal:Q74EJ1 GeneID:2687546
KEGG:gsu:GSU0971 PATRIC:22024716 OMA:QHRNKTE ProtClustDB:CLSK828124
BioCyc:GSUL243231:GH27-988-MONOMER Uniprot:Q74EJ1
Length = 107
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 19/39 (48%), Positives = 31/39 (79%)
Query: 26 LTDDEQFRECEMDTYKSSGPGGQHRNKRESAVRLKHVPT 64
+T D + + +++ Y++SGPGGQHRN +SAVR++H+PT
Sbjct: 1 MTVDIRDADIKVEYYRASGPGGQHRNTTDSAVRIRHLPT 39
>TIGR_CMR|GSU_0971 [details] [associations]
symbol:GSU_0971 "peptidyl-tRNA hydrolase domain protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000352 Pfam:PF00472 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0016787 EMBL:AE017180
GenomeReviews:AE017180_GR HOGENOM:HOG000244440 GO:GO:0003747
RefSeq:NP_952025.1 ProteinModelPortal:Q74EJ1 GeneID:2687546
KEGG:gsu:GSU0971 PATRIC:22024716 OMA:QHRNKTE ProtClustDB:CLSK828124
BioCyc:GSUL243231:GH27-988-MONOMER Uniprot:Q74EJ1
Length = 107
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 19/39 (48%), Positives = 31/39 (79%)
Query: 26 LTDDEQFRECEMDTYKSSGPGGQHRNKRESAVRLKHVPT 64
+T D + + +++ Y++SGPGGQHRN +SAVR++H+PT
Sbjct: 1 MTVDIRDADIKVEYYRASGPGGQHRNTTDSAVRIRHLPT 39
>TIGR_CMR|GSU_2278 [details] [associations]
symbol:GSU_2278 "peptide chain release factor 2,
programmed frameshift" species:243231 "Geobacter sulfurreducens
PCA" [GO:0003747 "translation release factor activity"
evidence=ISS] [GO:0006415 "translational termination" evidence=ISS]
HAMAP:MF_00094 InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 InterPro:IPR020853 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
Gene3D:3.30.160.20 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0016149 HOGENOM:HOG000074814 KO:K02836 PANTHER:PTHR11075:SF6
TIGRFAMs:TIGR00020 OMA:MGWGSQI RefSeq:NP_953327.1
ProteinModelPortal:Q74AS3 SMR:Q74AS3 GeneID:2686956
KEGG:gsu:GSU2278 PATRIC:22027411 ProtClustDB:CLSK828793
Uniprot:Q74AS3
Length = 372
Score = 109 (43.4 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 25 ELTDDEQFRECE----MDTYKSSGPGGQHRNKRESAVRLKHVPT 64
E+ DD + + E +DTY+SSG GGQH N +SAVRL H+PT
Sbjct: 223 EIEDDIEIKIAESDLRVDTYRSSGAGGQHVNTTDSAVRLTHLPT 266
>TIGR_CMR|APH_0479 [details] [associations]
symbol:APH_0479 "peptide chain release factor 2,
programmed frameshift" species:212042 "Anaplasma phagocytophilum
HZ" [GO:0003747 "translation release factor activity" evidence=ISS]
[GO:0006415 "translational termination" evidence=ISS]
InterPro:IPR000352 InterPro:IPR004374 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:CP000235
GenomeReviews:CP000235_GR eggNOG:COG1186 GO:GO:0016149
HOGENOM:HOG000074814 KO:K02836 OMA:KAWDMLR PANTHER:PTHR11075:SF6
TIGRFAMs:TIGR00020 RefSeq:YP_505078.1 ProteinModelPortal:Q2GKM3
STRING:Q2GKM3 GeneID:3930254 KEGG:aph:APH_0479 PATRIC:20949594
ProtClustDB:CLSK747346 Uniprot:Q2GKM3
Length = 376
Score = 109 (43.4 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 33 RECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSV 68
++ +DTY++SG GGQH NK ESAVR+ H+P+ V
Sbjct: 238 KDLRIDTYRASGAGGQHVNKTESAVRITHIPSGMVV 273
>TIGR_CMR|ECH_0705 [details] [associations]
symbol:ECH_0705 "peptide chain release factor 2,
programmed frameshift" species:205920 "Ehrlichia chaffeensis str.
Arkansas" [GO:0003747 "translation release factor activity"
evidence=ISS] [GO:0006415 "translational termination" evidence=ISS]
InterPro:IPR000352 InterPro:IPR004374 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 EMBL:CP000236
GenomeReviews:CP000236_GR Gene3D:3.30.160.20 eggNOG:COG1186
GO:GO:0016149 HOGENOM:HOG000074814 KO:K02836 OMA:KAWDMLR
PANTHER:PTHR11075:SF6 TIGRFAMs:TIGR00020 RefSeq:YP_507510.1
ProteinModelPortal:Q2GGC3 STRING:Q2GGC3 GeneID:3927613
KEGG:ech:ECH_0705 PATRIC:20576858 ProtClustDB:CLSK748740
Uniprot:Q2GGC3
Length = 366
Score = 108 (43.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 18/32 (56%), Positives = 26/32 (81%)
Query: 33 RECEMDTYKSSGPGGQHRNKRESAVRLKHVPT 64
++ +DTY++SG GGQH NK ESAVR+ H+P+
Sbjct: 237 KDLRIDTYRASGAGGQHVNKTESAVRITHIPS 268
>TIGR_CMR|GSU_3104 [details] [associations]
symbol:GSU_3104 "peptide chain release factor 1"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 ProtClustDB:PRK00591
TIGRFAMs:TIGR00019 OMA:SVMLEIR RefSeq:NP_954145.1
ProteinModelPortal:Q748B1 SMR:Q748B1 GeneID:2688463
KEGG:gsu:GSU3104 PATRIC:22029063
BioCyc:GSUL243231:GH27-3086-MONOMER Uniprot:Q748B1
Length = 355
Score = 106 (42.4 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 34 ECEMDTYKSSGPGGQHRNKRESAVRLKHVPT 64
+ ++D Y++SG GGQH NK ESAVR+ H+PT
Sbjct: 216 DLKIDVYRASGAGGQHVNKTESAVRITHIPT 246
>DICTYBASE|DDB_G0288835 [details] [associations]
symbol:prfB "class I peptide chain release factor"
species:44689 "Dictyostelium discoideum" [GO:0016149 "translation
release factor activity, codon specific" evidence=IEA] [GO:0006415
"translational termination" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003747 "translation release factor activity"
evidence=IEA] InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 dictyBase:DDB_G0288835
GO:GO:0005737 Gene3D:3.30.160.20 GenomeReviews:CM000154_GR
eggNOG:COG1186 EMBL:AAFI02000125 GO:GO:0016149
PANTHER:PTHR11075:SF6 RefSeq:XP_636549.1 ProteinModelPortal:Q54IC8
STRING:Q54IC8 EnsemblProtists:DDB0237485 GeneID:8626834
KEGG:ddi:DDB_G0288835 InParanoid:Q54IC8 OMA:LINESHN Uniprot:Q54IC8
Length = 424
Score = 107 (42.7 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 33 RECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSV 68
++ +T +SSG GGQH NK ESAVR+ H+PT SV
Sbjct: 293 KDLHFETLRSSGAGGQHVNKTESAVRIVHIPTGISV 328
>TIGR_CMR|SO_3833 [details] [associations]
symbol:SO_3833 "peptide chain release factor 1"
species:211586 "Shewanella oneidensis MR-1" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 OMA:GEAGGYK ProtClustDB:PRK00591
TIGRFAMs:TIGR00019 RefSeq:NP_719366.1 ProteinModelPortal:Q8EAR3
SMR:Q8EAR3 GeneID:1171478 KEGG:son:SO_3833 PATRIC:23527352
Uniprot:Q8EAR3
Length = 363
Score = 106 (42.4 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 17/31 (54%), Positives = 26/31 (83%)
Query: 34 ECEMDTYKSSGPGGQHRNKRESAVRLKHVPT 64
+ ++DT++SSG GGQH NK +SA+R+ H+PT
Sbjct: 223 DLKVDTFRSSGAGGQHVNKTDSAIRITHIPT 253
>TIGR_CMR|NSE_0604 [details] [associations]
symbol:NSE_0604 "peptide chain release factor 2,
programmed frameshift" species:222891 "Neorickettsia sennetsu str.
Miyayama" [GO:0003747 "translation release factor activity"
evidence=ISS] [GO:0006415 "translational termination" evidence=ISS]
HAMAP:MF_00094 InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 InterPro:IPR020853 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
Gene3D:3.30.160.20 eggNOG:COG1186 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0016149 HOGENOM:HOG000074814
KO:K02836 PANTHER:PTHR11075:SF6 TIGRFAMs:TIGR00020
RefSeq:YP_506484.1 ProteinModelPortal:Q2GDG2 STRING:Q2GDG2
GeneID:3931929 KEGG:nse:NSE_0604 PATRIC:22681243 OMA:SAVRITY
ProtClustDB:CLSK2527643 Uniprot:Q2GDG2
Length = 365
Score = 106 (42.4 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 17/32 (53%), Positives = 27/32 (84%)
Query: 33 RECEMDTYKSSGPGGQHRNKRESAVRLKHVPT 64
++ ++DTY++SG GGQH NK ESA+R+ H+P+
Sbjct: 236 KDLKIDTYRASGAGGQHVNKTESAIRITHLPS 267
>TIGR_CMR|CHY_0163 [details] [associations]
symbol:CHY_0163 "peptide chain release factor 2,
programmed frameshift" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0003747 "translation release factor
activity" evidence=ISS] [GO:0006415 "translational termination"
evidence=ISS] HAMAP:MF_00094 InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 InterPro:IPR020853 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
EMBL:CP000141 GenomeReviews:CP000141_GR Gene3D:3.30.160.20
eggNOG:COG1186 GO:GO:0016149 HOGENOM:HOG000074814 KO:K02836
PANTHER:PTHR11075:SF6 TIGRFAMs:TIGR00020 OMA:MGWGSQI
RefSeq:YP_359035.1 ProteinModelPortal:Q3AFP9 STRING:Q3AFP9
GeneID:3727359 KEGG:chy:CHY_0163 PATRIC:21273511 Uniprot:Q3AFP9
Length = 371
Score = 106 (42.4 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 19/35 (54%), Positives = 27/35 (77%)
Query: 34 ECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSV 68
E +++T++S G GGQH NK ESAVR+ H+PT +V
Sbjct: 237 ELKIETFRSGGAGGQHVNKTESAVRITHLPTGITV 271
>TIGR_CMR|CJE_1628 [details] [associations]
symbol:CJE_1628 "peptide chain release factor 2"
species:195099 "Campylobacter jejuni RM1221" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00094
InterPro:IPR000352 InterPro:IPR004374 InterPro:IPR005139
InterPro:IPR020853 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20
EMBL:CP000025 GenomeReviews:CP000025_GR eggNOG:COG1186
GO:GO:0016149 RefSeq:YP_179609.1 ProteinModelPortal:Q5HSX6
STRING:Q5HSX6 GeneID:3232256 KEGG:cjr:CJE1628 PATRIC:20045053
HOGENOM:HOG000074814 KO:K02836 OMA:KAWDMLR ProtClustDB:PRK00578
BioCyc:CJEJ195099:GJC0-1658-MONOMER PANTHER:PTHR11075:SF6
TIGRFAMs:TIGR00020 Uniprot:Q5HSX6
Length = 365
Score = 105 (42.0 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 25 ELTDDEQF----RECEMDTYKSSGPGGQHRNKRESAVRLKHVPT 64
EL DD + ++ +D Y++SG GGQH NK ESAVR+ H PT
Sbjct: 224 ELDDDIEIEIEEKDIRIDYYRASGAGGQHVNKTESAVRITHFPT 267
>TIGR_CMR|SPO_2585 [details] [associations]
symbol:SPO_2585 "peptide chain release factor 2"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003747 "translation
release factor activity" evidence=ISS] [GO:0006415 "translational
termination" evidence=ISS] HAMAP:MF_00094 InterPro:IPR000352
InterPro:IPR004374 InterPro:IPR005139 InterPro:IPR020853
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 EMBL:CP000031
GenomeReviews:CP000031_GR Gene3D:3.30.160.20 GO:GO:0016149
HOGENOM:HOG000074814 KO:K02836 OMA:KAWDMLR ProtClustDB:PRK00578
PANTHER:PTHR11075:SF6 TIGRFAMs:TIGR00020 RefSeq:YP_167798.1
ProteinModelPortal:Q5LQA8 SMR:Q5LQA8 GeneID:3194310
KEGG:sil:SPO2585 PATRIC:23378573 Uniprot:Q5LQA8
Length = 375
Score = 104 (41.7 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 34 ECEMDTYKSSGPGGQHRNKRESAVRLKHVPT 64
+ +DTY+SSG GGQH N +SAVR+ H+PT
Sbjct: 236 DIRIDTYRSSGAGGQHVNTTDSAVRITHIPT 266
>TAIR|locus:2041409 [details] [associations]
symbol:AT2G47020 species:3702 "Arabidopsis thaliana"
[GO:0003747 "translation release factor activity" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM;IEA] [GO:0006415
"translational termination" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0016149 "translation release factor
activity, codon specific" evidence=IEA] InterPro:IPR000352
InterPro:IPR004373 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 EMBL:CP002685
GenomeReviews:CT485783_GR Gene3D:3.30.160.20 GO:GO:0016149
KO:K02835 OMA:EMPEINP TIGRFAMs:TIGR00019 EMBL:BT030058
IPI:IPI00517548 RefSeq:NP_182225.3 UniGene:At.43988
ProteinModelPortal:A2RVR7 SMR:A2RVR7 PRIDE:A2RVR7
EnsemblPlants:AT2G47020.1 GeneID:819316 KEGG:ath:AT2G47020
TAIR:At2g47020 PhylomeDB:A2RVR7 Genevestigator:Q3E6W0
Uniprot:A2RVR7
Length = 413
Score = 104 (41.7 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 29 DEQFR--ECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSVNL 70
D Q R + +DTY+S G GGQH N SAVR+ H+PT V++
Sbjct: 266 DVQLRNEDLRIDTYRSGGSGGQHANTTNSAVRIIHLPTGMMVSI 309
>TIGR_CMR|CPS_3552 [details] [associations]
symbol:CPS_3552 "peptide chain release factor 1"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 HSSP:P0A7I0 OMA:EMPEINP
TIGRFAMs:TIGR00019 RefSeq:YP_270226.1 ProteinModelPortal:Q47Y94
SMR:Q47Y94 STRING:Q47Y94 GeneID:3522324 KEGG:cps:CPS_3552
PATRIC:21470035 BioCyc:CPSY167879:GI48-3580-MONOMER Uniprot:Q47Y94
Length = 362
Score = 103 (41.3 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 16/31 (51%), Positives = 26/31 (83%)
Query: 34 ECEMDTYKSSGPGGQHRNKRESAVRLKHVPT 64
+ ++DT+++SG GGQH NK +SA+R+ H+PT
Sbjct: 223 DLKVDTFRASGAGGQHVNKTDSAIRITHIPT 253
>TIGR_CMR|APH_0420 [details] [associations]
symbol:APH_0420 "peptide chain release factor 1"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 RefSeq:YP_505023.1
ProteinModelPortal:Q2GKS8 STRING:Q2GKS8 GeneID:3929978
KEGG:aph:APH_0420 PATRIC:20949454 OMA:EMPEINP ProtClustDB:PRK00591
BioCyc:APHA212042:GHPM-447-MONOMER TIGRFAMs:TIGR00019
Uniprot:Q2GKS8
Length = 359
Score = 102 (41.0 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 20/40 (50%), Positives = 28/40 (70%)
Query: 25 ELTDDEQFRECEMDTYKSSGPGGQHRNKRESAVRLKHVPT 64
+L DE ++ +D Y+SSGPGGQ N +SAVR+ H+PT
Sbjct: 214 DLKIDE--KDLRIDVYRSSGPGGQSVNTTDSAVRITHIPT 251
>UNIPROTKB|P07012 [details] [associations]
symbol:prfB species:83333 "Escherichia coli K-12"
[GO:0015858 "nucleoside transport" evidence=IMP] [GO:0015864
"pyrimidine nucleoside transport" evidence=IMP] [GO:0015862
"uridine transport" evidence=IMP] [GO:0006412 "translation"
evidence=IEA] [GO:0016149 "translation release factor activity,
codon specific" evidence=IEA;IDA] [GO:0006415 "translational
termination" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA] HAMAP:MF_00094 InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 InterPro:IPR020853 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR Gene3D:3.30.160.20 EMBL:U28375
eggNOG:COG1186 GO:GO:0016149 HOGENOM:HOG000074814 KO:K02836
OMA:KAWDMLR ProtClustDB:PRK00578 PANTHER:PTHR11075:SF6
TIGRFAMs:TIGR00020 EMBL:M11520 EMBL:J03795 PIR:C65073
RefSeq:NP_417367.1 RefSeq:YP_491092.1 PDB:1GQE PDB:1MI6 PDB:1ML5
PDBsum:1GQE PDBsum:1MI6 PDBsum:1ML5 ProteinModelPortal:P07012
SMR:P07012 DIP:DIP-10559N IntAct:P07012 MINT:MINT-1238444
PaxDb:P07012 PRIDE:P07012 EnsemblBacteria:EBESCT00000002308
EnsemblBacteria:EBESCT00000016130 GeneID:12930712 GeneID:947369
KEGG:ecj:Y75_p2823 KEGG:eco:b2891 PATRIC:32121192 EchoBASE:EB0755
EcoGene:EG10762 BioCyc:EcoCyc:EG10762-MONOMER
BioCyc:ECOL316407:JW5847-MONOMER EvolutionaryTrace:P07012
Genevestigator:P07012 GO:GO:0015862 Uniprot:P07012
Length = 365
Score = 102 (41.0 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 34 ECEMDTYKSSGPGGQHRNKRESAVRLKHVPT 64
+ +D Y++SG GGQH N+ ESAVR+ H+PT
Sbjct: 238 DLRIDVYRTSGAGGQHVNRTESAVRITHIPT 268
>UNIPROTKB|O75570 [details] [associations]
symbol:MTRF1 "Peptide chain release factor 1,
mitochondrial" species:9606 "Homo sapiens" [GO:0016149 "translation
release factor activity, codon specific" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0003747 "translation release
factor activity" evidence=TAS] [GO:0006449 "regulation of
translational termination" evidence=TAS] InterPro:IPR000352
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005739 Gene3D:3.30.160.20
GO:GO:0003747 GO:GO:0006449 GO:GO:0016149 EMBL:AL354696
eggNOG:COG0216 HOGENOM:HOG000074815 HOVERGEN:HBG017071 KO:K02835
CTD:9617 OrthoDB:EOG48KRBQ EMBL:AF072934 EMBL:BC042196
IPI:IPI00026157 RefSeq:NP_004285.2 UniGene:Hs.382176
ProteinModelPortal:O75570 SMR:O75570 IntAct:O75570 STRING:O75570
PhosphoSite:O75570 PRIDE:O75570 Ensembl:ENST00000379477
Ensembl:ENST00000379480 Ensembl:ENST00000452359 GeneID:9617
KEGG:hsa:9617 UCSC:uc001uxx.3 GeneCards:GC13M041790 HGNC:HGNC:7469
HPA:HPA043316 MIM:604601 neXtProt:NX_O75570 PharmGKB:PA31273
InParanoid:O75570 PhylomeDB:O75570 GenomeRNAi:9617 NextBio:36079
ArrayExpress:O75570 Bgee:O75570 CleanEx:HS_MTRF1
Genevestigator:O75570 GermOnline:ENSG00000120662 Uniprot:O75570
Length = 445
Score = 102 (41.0 bits), Expect = 0.00011, P = 0.00011
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 33 RECEMDTYKSSGPGGQHRNKRESAVRLKHVPT 64
++ +DT+++ G GGQH NK +SAVRL H+PT
Sbjct: 298 KDLRIDTFRAKGAGGQHVNKTDSAVRLVHIPT 329
>UNIPROTKB|B4DG01 [details] [associations]
symbol:MTRF1 "Peptide chain release factor 1,
mitochondrial" species:9606 "Homo sapiens" [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016149 "translation release factor activity,
codon specific" evidence=IEA] InterPro:IPR000352 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 GO:GO:0016149
EMBL:AL354696 HOGENOM:HOG000074815 HOVERGEN:HBG017071 OMA:VWLFRHP
UniGene:Hs.382176 HGNC:HGNC:7469 EMBL:AK294343 IPI:IPI00909024
SMR:B4DG01 STRING:B4DG01 Ensembl:ENST00000430347 UCSC:uc010tff.2
Uniprot:B4DG01
Length = 468
Score = 102 (41.0 bits), Expect = 0.00011, P = 0.00011
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 33 RECEMDTYKSSGPGGQHRNKRESAVRLKHVPT 64
++ +DT+++ G GGQH NK +SAVRL H+PT
Sbjct: 311 KDLRIDTFRAKGAGGQHVNKTDSAVRLVHIPT 342
>ZFIN|ZDB-GENE-050220-8 [details] [associations]
symbol:zgc:113104 "zgc:113104" species:7955 "Danio
rerio" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016149
"translation release factor activity, codon specific" evidence=IEA]
[GO:0006415 "translational termination" evidence=IEA] [GO:0003747
"translation release factor activity" evidence=IEA]
InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 InterPro:IPR014720 ZFIN:ZDB-GENE-050220-8
GO:GO:0005737 Gene3D:3.30.160.20 GO:GO:0016149 HOGENOM:HOG000074815
KO:K02835 EMBL:BC090173 IPI:IPI00484442 RefSeq:NP_001012512.1
UniGene:Dr.77520 ProteinModelPortal:Q5EB09 GeneID:503530
KEGG:dre:503530 InParanoid:Q5EB09 NextBio:20866191 Uniprot:Q5EB09
Length = 235
Score = 97 (39.2 bits), Expect = 0.00012, P = 0.00012
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 33 RECEMDTYKSSGPGGQHRNKRESAVRLKHVPTAS 66
++ +DT++S G GGQH N +SAVRL H+PT +
Sbjct: 92 KDLRIDTFRSRGAGGQHVNTTDSAVRLVHLPTGT 125
>TIGR_CMR|CBU_1965 [details] [associations]
symbol:CBU_1965 "peptide chain release factor 1"
species:227377 "Coxiella burnetii RSA 493" [GO:0003747 "translation
release factor activity" evidence=ISS] [GO:0006415 "translational
termination" evidence=ISS] HAMAP:MF_00093 InterPro:IPR000352
InterPro:IPR004373 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
Gene3D:3.30.160.20 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0016149 EMBL:X78969 eggNOG:COG0216 HOGENOM:HOG000074815
KO:K02835 OMA:EMPEINP ProtClustDB:PRK00591 TIGRFAMs:TIGR00019
PIR:A61648 RefSeq:NP_820940.1 ProteinModelPortal:P47849 SMR:P47849
PRIDE:P47849 GeneID:1209878 KEGG:cbu:CBU_1965 PATRIC:17932673
BioCyc:CBUR227377:GJ7S-1939-MONOMER Uniprot:P47849
Length = 361
Score = 100 (40.3 bits), Expect = 0.00013, P = 0.00013
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 34 ECEMDTYKSSGPGGQHRNKRESAVRLKHVPT 64
E +DT+++SG GGQH N+ +SA+R+ H+PT
Sbjct: 223 ELRIDTFRASGAGGQHVNRTDSAIRITHLPT 253
>TIGR_CMR|NSE_0406 [details] [associations]
symbol:NSE_0406 "peptide chain release factor 1"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 TIGRFAMs:TIGR00019 OMA:SVMLEIR
RefSeq:YP_506293.1 ProteinModelPortal:Q2GE03 SMR:Q2GE03
STRING:Q2GE03 GeneID:3931950 KEGG:nse:NSE_0406 PATRIC:22680869
ProtClustDB:CLSK2527657 BioCyc:NSEN222891:GHFU-429-MONOMER
Uniprot:Q2GE03
Length = 367
Score = 100 (40.3 bits), Expect = 0.00013, P = 0.00013
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 33 RECEMDTYKSSGPGGQHRNKRESAVRLKHVPT 64
++ +D Y+SSGPGGQ N +SAVR+ H+PT
Sbjct: 221 KDLRIDVYRSSGPGGQSVNTTDSAVRITHIPT 252
>CGD|CAL0003702 [details] [associations]
symbol:orf19.1303 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0003747 "translation release
factor activity" evidence=IEA] [GO:0070126 "mitochondrial
translational termination" evidence=IEA] InterPro:IPR000352
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 CGD:CAL0003702 GO:GO:0005737
Gene3D:3.30.160.20 GO:GO:0016149 EMBL:AACQ01000138
HOGENOM:HOG000074815 KO:K02835 RefSeq:XP_709944.1
ProteinModelPortal:Q59TR5 STRING:Q59TR5 GeneID:3645356
KEGG:cal:CaO19.1303 Uniprot:Q59TR5
Length = 394
Score = 100 (40.3 bits), Expect = 0.00014, P = 0.00014
Identities = 23/46 (50%), Positives = 29/46 (63%)
Query: 26 LTDDEQ-FR--ECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSV 68
L DDE+ F E +DT ++ G GGQH N +SAVRL H+PT V
Sbjct: 256 LKDDERVFAPGEVRIDTMRAGGKGGQHVNTTDSAVRLLHIPTGMIV 301
>POMBASE|SPAC2F7.17 [details] [associations]
symbol:SPAC2F7.17 "mitochondrial peptide chain release
factor (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003747 "translation release factor activity" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=ISS] [GO:0006412 "translation" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] [GO:0016149 "translation
release factor activity, codon specific" evidence=IEA] [GO:0032543
"mitochondrial translation" evidence=NAS] InterPro:IPR000352
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 PomBase:SPAC2F7.17 GO:GO:0005739
EMBL:CU329670 Gene3D:3.30.160.20 GO:GO:0032543 GO:GO:0003747
GO:GO:0016149 eggNOG:COG0216 HOGENOM:HOG000074815 KO:K02835
PIR:S58161 RefSeq:NP_592987.1 ProteinModelPortal:Q09691
STRING:Q09691 EnsemblFungi:SPAC2F7.17.1 GeneID:2541478
KEGG:spo:SPAC2F7.17 OMA:QEANSIL OrthoDB:EOG4JWZP5 NextBio:20802577
Uniprot:Q09691
Length = 396
Score = 100 (40.3 bits), Expect = 0.00015, P = 0.00015
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 34 ECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSVNL 70
E +++ +S G GGQH N+ ESAVRL H+PT +V++
Sbjct: 256 EVKIEVMRSRGAGGQHVNRTESAVRLTHIPTGITVSM 292
>UNIPROTKB|Q5TF45 [details] [associations]
symbol:MTRF1L "Peptide chain release factor 1-like,
mitochondrial" species:9606 "Homo sapiens" [GO:0003747 "translation
release factor activity" evidence=IEA] InterPro:IPR000352
Pfam:PF00472 PROSITE:PS00745 InterPro:IPR014720 Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0003747 EMBL:AL080276 eggNOG:COG0216
HOGENOM:HOG000074815 UniGene:Hs.225836 HGNC:HGNC:21051
IPI:IPI00514520 SMR:Q5TF45 STRING:Q5TF45 Ensembl:ENST00000448966
Uniprot:Q5TF45
Length = 164
Score = 91 (37.1 bits), Expect = 0.00020, P = 0.00020
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 33 RECEMDTYKSSGPGGQHRNKRESAVRLKHVPT 64
++ +DT ++SG GGQH N +SAVR+ H+PT
Sbjct: 101 KDLRIDTKRASGAGGQHVNTTDSAVRIVHLPT 132
>TIGR_CMR|ECH_0597 [details] [associations]
symbol:ECH_0597 "peptide chain release factor 1"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 EMBL:CP000236
GenomeReviews:CP000236_GR Gene3D:3.30.160.20 GO:GO:0016149
eggNOG:COG0216 HOGENOM:HOG000074815 KO:K02835 OMA:EMPEINP
ProtClustDB:PRK00591 TIGRFAMs:TIGR00019 RefSeq:YP_507408.1
ProteinModelPortal:Q2GGM5 SMR:Q2GGM5 STRING:Q2GGM5 GeneID:3927422
KEGG:ech:ECH_0597 PATRIC:20576648
BioCyc:ECHA205920:GJNR-599-MONOMER Uniprot:Q2GGM5
Length = 359
Score = 98 (39.6 bits), Expect = 0.00021, P = 0.00021
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 25 ELTDDEQFRECEMDTYKSSGPGGQHRNKRESAVRLKHVPT 64
+L DE ++ +D Y+SSGPGGQ N +SAVR+ H+P+
Sbjct: 214 DLKIDE--KDLRIDVYRSSGPGGQSVNTTDSAVRITHIPS 251
>UNIPROTKB|Q9KQ25 [details] [associations]
symbol:prfA "Peptide chain release factor 1" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 EMBL:AE003852
GenomeReviews:AE003852_GR Gene3D:3.30.160.20 GO:GO:0003747
GO:GO:0016149 eggNOG:COG0216 KO:K02835 OMA:GEAGGYK
ProtClustDB:PRK00591 TIGRFAMs:TIGR00019 PIR:B82109
RefSeq:NP_231810.1 ProteinModelPortal:Q9KQ25 SMR:Q9KQ25
DNASU:2613315 GeneID:2613315 KEGG:vch:VC2179 PATRIC:20083371
Uniprot:Q9KQ25
Length = 362
Score = 98 (39.6 bits), Expect = 0.00021, P = 0.00021
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 34 ECEMDTYKSSGPGGQHRNKRESAVRLKHVPT 64
+ ++DT++SSG GGQH N +SA+R+ H+PT
Sbjct: 223 DLKIDTFRSSGAGGQHVNTTDSAIRITHLPT 253
>TIGR_CMR|VC_2179 [details] [associations]
symbol:VC_2179 "peptide chain release factor 1" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003747 "translation release
factor activity" evidence=ISS] [GO:0006415 "translational
termination" evidence=ISS] HAMAP:MF_00093 InterPro:IPR000352
InterPro:IPR004373 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
EMBL:AE003852 GenomeReviews:AE003852_GR Gene3D:3.30.160.20
GO:GO:0003747 GO:GO:0016149 eggNOG:COG0216 KO:K02835 OMA:GEAGGYK
ProtClustDB:PRK00591 TIGRFAMs:TIGR00019 PIR:B82109
RefSeq:NP_231810.1 ProteinModelPortal:Q9KQ25 SMR:Q9KQ25
DNASU:2613315 GeneID:2613315 KEGG:vch:VC2179 PATRIC:20083371
Uniprot:Q9KQ25
Length = 362
Score = 98 (39.6 bits), Expect = 0.00021, P = 0.00021
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 34 ECEMDTYKSSGPGGQHRNKRESAVRLKHVPT 64
+ ++DT++SSG GGQH N +SA+R+ H+PT
Sbjct: 223 DLKIDTFRSSGAGGQHVNTTDSAIRITHLPT 253
>UNIPROTKB|E1BXF8 [details] [associations]
symbol:MTRF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0016149 "translation release factor activity, codon
specific" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005739
Gene3D:3.30.160.20 GO:GO:0016149 GeneTree:ENSGT00390000011879
OMA:VWLFRHP EMBL:AADN02005497 IPI:IPI00591431
Ensembl:ENSGALT00000027399 Uniprot:E1BXF8
Length = 417
Score = 98 (39.6 bits), Expect = 0.00026, P = 0.00026
Identities = 16/32 (50%), Positives = 25/32 (78%)
Query: 33 RECEMDTYKSSGPGGQHRNKRESAVRLKHVPT 64
++ +DT+++ G GGQH NK +SAVR+ H+PT
Sbjct: 267 KDLRIDTFRAKGAGGQHVNKTDSAVRIVHLPT 298
>TIGR_CMR|BA_5572 [details] [associations]
symbol:BA_5572 "peptide chain release factor 1"
species:198094 "Bacillus anthracis str. Ames" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR Gene3D:3.30.160.20 GO:GO:0016149
eggNOG:COG0216 HOGENOM:HOG000074815 KO:K02835 OMA:EMPEINP
ProtClustDB:PRK00591 TIGRFAMs:TIGR00019 RefSeq:NP_847729.1
RefSeq:YP_022240.1 RefSeq:YP_031417.1 ProteinModelPortal:Q81JX1
SMR:Q81JX1 DNASU:1085262 EnsemblBacteria:EBBACT00000012375
EnsemblBacteria:EBBACT00000014683 EnsemblBacteria:EBBACT00000022198
GeneID:1085262 GeneID:2819896 GeneID:2852042 KEGG:ban:BA_5572
KEGG:bar:GBAA_5572 KEGG:bat:BAS5178
BioCyc:BANT260799:GJAJ-5253-MONOMER
BioCyc:BANT261594:GJ7F-5432-MONOMER Uniprot:Q81JX1
Length = 355
Score = 97 (39.2 bits), Expect = 0.00026, P = 0.00026
Identities = 21/45 (46%), Positives = 28/45 (62%)
Query: 25 ELTDDEQFRECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSVN 69
E+ D ++ +DT+ SSGPGGQ N SAVRL H+PT V+
Sbjct: 210 EVEIDIHEKDVRVDTFASSGPGGQSVNTTMSAVRLTHLPTGVVVS 254
>UNIPROTKB|P0A7I0 [details] [associations]
symbol:prfA "peptide chain release factor RF1"
species:83333 "Escherichia coli K-12" [GO:0043022 "ribosome
binding" evidence=IDA] [GO:0016149 "translation release factor
activity, codon specific" evidence=IEA;IDA] [GO:0006415
"translational termination" evidence=IEA;IMP] [GO:0006412
"translation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
HAMAP:MF_00093 InterPro:IPR000352 InterPro:IPR004373
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
Gene3D:3.30.160.20 GO:GO:0043022 GO:GO:0016149 EMBL:M25323
EMBL:U18555 EMBL:D28567 PDB:2B3T PDBsum:2B3T eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 OMA:EMPEINP ProtClustDB:PRK00591
TIGRFAMs:TIGR00019 EMBL:M11519 PIR:H64867 RefSeq:NP_415729.1
RefSeq:YP_489478.1 ProteinModelPortal:P0A7I0 SMR:P0A7I0
DIP:DIP-35936N IntAct:P0A7I0 MINT:MINT-1219241 PaxDb:P0A7I0
PRIDE:P0A7I0 EnsemblBacteria:EBESCT00000004821
EnsemblBacteria:EBESCT00000015260 GeneID:12931113 GeneID:949002
KEGG:ecj:Y75_p1183 KEGG:eco:b1211 PATRIC:32117674 EchoBASE:EB0754
EcoGene:EG10761 BioCyc:EcoCyc:EG10761-MONOMER
BioCyc:ECOL316407:JW1202-MONOMER EvolutionaryTrace:P0A7I0
Genevestigator:P0A7I0 Uniprot:P0A7I0
Length = 360
Score = 97 (39.2 bits), Expect = 0.00027, P = 0.00027
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 34 ECEMDTYKSSGPGGQHRNKRESAVRLKHVPT 64
+ +DT++SSG GGQH N +SA+R+ H+PT
Sbjct: 221 DLRIDTFRSSGAGGQHVNTTDSAIRITHLPT 251
>UNIPROTKB|P66026 [details] [associations]
symbol:prfB "Peptide chain release factor 2" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] HAMAP:MF_00094
InterPro:IPR000352 InterPro:IPR004374 InterPro:IPR005139
InterPro:IPR020853 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR Gene3D:3.30.160.20 EMBL:BX842582
eggNOG:COG1186 GO:GO:0016149 HOGENOM:HOG000074814 KO:K02836
OMA:KAWDMLR ProtClustDB:PRK00578 PANTHER:PTHR11075:SF6
TIGRFAMs:TIGR00020 PIR:H70919 RefSeq:NP_217621.1 RefSeq:NP_337713.1
RefSeq:YP_006516568.1 ProteinModelPortal:P66026 SMR:P66026
EnsemblBacteria:EBMYCT00000000199 EnsemblBacteria:EBMYCT00000071451
GeneID:13317912 GeneID:888820 GeneID:926714 KEGG:mtc:MT3188
KEGG:mtu:Rv3105c KEGG:mtv:RVBD_3105c PATRIC:18128778
TubercuList:Rv3105c Uniprot:P66026
Length = 371
Score = 97 (39.2 bits), Expect = 0.00028, P = 0.00028
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 25 ELTDDEQFRECEM--DTYKSSGPGGQHRNKRESAVRLKHVPT 64
E TD E ++ D Y+SSGPGGQ N +SAVRL H+P+
Sbjct: 228 ETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVRLTHIPS 269
>TIGR_CMR|CHY_2563 [details] [associations]
symbol:CHY_2563 "peptide chain release factor 1"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003747 "translation release factor activity" evidence=ISS]
[GO:0006415 "translational termination" evidence=ISS]
HAMAP:MF_00093 InterPro:IPR000352 InterPro:IPR004373
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:3.30.160.20 GO:GO:0016149
eggNOG:COG0216 HOGENOM:HOG000074815 KO:K02835 HSSP:P0A7I0
OMA:EMPEINP ProtClustDB:PRK00591 TIGRFAMs:TIGR00019
RefSeq:YP_361356.1 ProteinModelPortal:Q3A928 SMR:Q3A928
STRING:Q3A928 GeneID:3727190 KEGG:chy:CHY_2563 PATRIC:21278175
BioCyc:CHYD246194:GJCN-2562-MONOMER Uniprot:Q3A928
Length = 358
Score = 96 (38.9 bits), Expect = 0.00034, P = 0.00034
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 34 ECEMDTYKSSGPGGQHRNKRESAVRLKHVPT 64
+ +D + +SG GGQH NK ESAVR+ H+PT
Sbjct: 219 DLRIDVFCASGAGGQHVNKTESAVRITHIPT 249
>UNIPROTKB|F1RJ87 [details] [associations]
symbol:MTRF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0016149
"translation release factor activity, codon specific" evidence=IEA]
InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005739
Gene3D:3.30.160.20 GO:GO:0016149 KO:K02835
GeneTree:ENSGT00390000011879 CTD:9617 OMA:VWLFRHP EMBL:CU062515
RefSeq:NP_001230509.1 UniGene:Ssc.41357 Ensembl:ENSSSCT00000010343
GeneID:100155739 KEGG:ssc:100155739 Uniprot:F1RJ87
Length = 446
Score = 97 (39.2 bits), Expect = 0.00037, P = 0.00037
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 33 RECEMDTYKSSGPGGQHRNKRESAVRLKHVPT 64
++ +DT+++ G GGQH N +SAVRL HVPT
Sbjct: 299 KDLRIDTFRAKGAGGQHVNTTDSAVRLVHVPT 330
>ASPGD|ASPL0000035902 [details] [associations]
symbol:AN3462 species:162425 "Emericella nidulans"
[GO:0070126 "mitochondrial translational termination" evidence=IEA]
[GO:0016149 "translation release factor activity, codon specific"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0003747
"translation release factor activity" evidence=IEA]
InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
Gene3D:3.30.160.20 EMBL:BN001306 GO:GO:0016149 HOGENOM:HOG000074815
OMA:QCQAGNA EnsemblFungi:CADANIAT00009571 Uniprot:C8VHA3
Length = 418
Score = 96 (38.9 bits), Expect = 0.00043, P = 0.00043
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 33 RECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSVNL 70
+E + ++SG GGQH NK ESA+RL H+PT V++
Sbjct: 268 QEVRTEKMRASGAGGQHVNKTESAIRLTHMPTGIVVSM 305
>UNIPROTKB|E2RAT2 [details] [associations]
symbol:MTRF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0016149 "translation release factor activity, codon specific"
evidence=IEA] InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472
Pfam:PF03462 PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720
GO:GO:0005739 Gene3D:3.30.160.20 GO:GO:0016149 KO:K02835
GeneTree:ENSGT00390000011879 CTD:9617 OMA:VWLFRHP EMBL:AAEX03013173
RefSeq:XP_848713.1 ProteinModelPortal:E2RAT2
Ensembl:ENSCAFT00000007724 GeneID:485465 KEGG:cfa:485465
NextBio:20859471 Uniprot:E2RAT2
Length = 444
Score = 96 (38.9 bits), Expect = 0.00047, P = 0.00046
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 33 RECEMDTYKSSGPGGQHRNKRESAVRLKHVPT 64
++ +DT+++ G GGQH N +SAVRL H+PT
Sbjct: 297 KDLRIDTFRAKGAGGQHVNTTDSAVRLVHIPT 328
>UNIPROTKB|Q3MHI7 [details] [associations]
symbol:MTRF1 "Peptide chain release factor 1,
mitochondrial" species:9913 "Bos taurus" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0016149 "translation release
factor activity, codon specific" evidence=IEA] InterPro:IPR000352
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005739 Gene3D:3.30.160.20
GO:GO:0016149 eggNOG:COG0216 HOGENOM:HOG000074815
HOVERGEN:HBG017071 KO:K02835 GeneTree:ENSGT00390000011879
EMBL:BC105224 IPI:IPI00698094 RefSeq:NP_001030185.1
UniGene:Bt.37767 HSSP:P0A7I0 ProteinModelPortal:Q3MHI7
STRING:Q3MHI7 PRIDE:Q3MHI7 Ensembl:ENSBTAT00000016261 GeneID:504754
KEGG:bta:504754 CTD:9617 InParanoid:Q3MHI7 OMA:VWLFRHP
OrthoDB:EOG48KRBQ NextBio:20866812 Uniprot:Q3MHI7
Length = 447
Score = 96 (38.9 bits), Expect = 0.00047, P = 0.00047
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 33 RECEMDTYKSSGPGGQHRNKRESAVRLKHVPT 64
++ +DT+++ G GGQH N +SAVRL H+PT
Sbjct: 300 KDLRIDTFRAKGAGGQHVNTTDSAVRLVHIPT 331
>DICTYBASE|DDB_G0283175 [details] [associations]
symbol:prfA "peptide chain release factor 1"
species:44689 "Dictyostelium discoideum" [GO:0016149 "translation
release factor activity, codon specific" evidence=IEA] [GO:0006415
"translational termination" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003747 "translation release factor activity"
evidence=IEA] InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472
Pfam:PF03462 PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720
dictyBase:DDB_G0283175 GO:GO:0005737 GenomeReviews:CM000153_GR
Gene3D:3.30.160.20 EMBL:AAFI02000051 GO:GO:0016149 eggNOG:COG0216
KO:K02835 RefSeq:XP_639198.1 ProteinModelPortal:Q54RE7
STRING:Q54RE7 EnsemblProtists:DDB0237484 GeneID:8623973
KEGG:ddi:DDB_G0283175 InParanoid:Q54RE7 OMA:HAAICIN
ProtClustDB:CLSZ2430394 Uniprot:Q54RE7
Length = 430
Score = 95 (38.5 bits), Expect = 0.00057, P = 0.00057
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 33 RECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSV 68
R+ ++D Y+SSG GGQ N +SAVR+ H+PT +V
Sbjct: 292 RDLKVDIYRSSGNGGQSVNTTDSAVRITHLPTGITV 327
>MGI|MGI:2384815 [details] [associations]
symbol:Mtrf1 "mitochondrial translational release factor 1"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003747 "translation release factor activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0006412 "translation"
evidence=IEA] [GO:0006415 "translational termination" evidence=IEA]
[GO:0016149 "translation release factor activity, codon specific"
evidence=IEA] InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472
Pfam:PF03462 PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720
MGI:MGI:2384815 GO:GO:0005739 Gene3D:3.30.160.20 GO:GO:0016149
eggNOG:COG0216 HOGENOM:HOG000074815 HOVERGEN:HBG017071 KO:K02835
GeneTree:ENSGT00390000011879 CTD:9617 OMA:VWLFRHP OrthoDB:EOG48KRBQ
EMBL:AK043981 EMBL:BC028898 IPI:IPI00169629 RefSeq:NP_666072.3
UniGene:Mm.35306 ProteinModelPortal:Q8K126 SMR:Q8K126 STRING:Q8K126
PhosphoSite:Q8K126 PRIDE:Q8K126 Ensembl:ENSMUST00000022600
GeneID:211253 KEGG:mmu:211253 UCSC:uc007usw.1 InParanoid:Q8K126
NextBio:373184 Bgee:Q8K126 CleanEx:MM_MTRF1 Genevestigator:Q8K126
GermOnline:ENSMUSG00000022022 Uniprot:Q8K126
Length = 446
Score = 95 (38.5 bits), Expect = 0.00060, P = 0.00060
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 33 RECEMDTYKSSGPGGQHRNKRESAVRLKHVPT 64
++ +DT+++ G GGQH N +SAVRL H+PT
Sbjct: 299 KDLRVDTFRARGAGGQHVNTTDSAVRLVHIPT 330
>TIGR_CMR|DET_1210 [details] [associations]
symbol:DET_1210 "peptide chain release factor 1"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 HSSP:P0A7I0 ProtClustDB:PRK00591
TIGRFAMs:TIGR00019 RefSeq:YP_181923.1 ProteinModelPortal:Q3Z776
STRING:Q3Z776 GeneID:3229489 KEGG:det:DET1210 PATRIC:21609455
OMA:SVMLEIR BioCyc:DETH243164:GJNF-1211-MONOMER Uniprot:Q3Z776
Length = 355
Score = 80 (33.2 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 25 ELTDDEQFRECEMDTYKSSGPGGQHRNKRESAVRLKHVPT 64
E+ D + +D + SSG GGQ+ K +A+RL H+PT
Sbjct: 210 EVDIDINMDDVRVDIFHSSGAGGQNVQKVATAIRLTHIPT 249
Score = 32 (16.3 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 91 CSEVGPQIRPNNPKFALL 108
C + Q++ N FA+L
Sbjct: 255 CQDERSQLKNKNKAFAVL 272
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 128 97 0.00091 102 3 11 22 0.38 30
29 0.44 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 40
No. of states in DFA: 517 (55 KB)
Total size of DFA: 102 KB (2071 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 8.90u 0.15s 9.05t Elapsed: 00:00:00
Total cpu time: 8.90u 0.15s 9.05t Elapsed: 00:00:00
Start: Mon May 20 22:13:42 2013 End: Mon May 20 22:13:42 2013