BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045445
(128 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2W3F8|RF2_MAGSA Peptide chain release factor 2 OS=Magnetospirillum magneticum
(strain AMB-1 / ATCC 700264) GN=prfB PE=3 SV=1
Length = 371
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 28/35 (80%)
Query: 34 ECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSV 68
EC +DTY++SG GGQH NK +SAVR+ H+PT +V
Sbjct: 236 ECRIDTYRASGAGGQHINKTDSAVRITHIPTGIAV 270
>sp|A7I0P7|RF2_CAMHC Peptide chain release factor 2 OS=Campylobacter hominis (strain
ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=prfB
PE=3 SV=1
Length = 364
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%), Gaps = 4/44 (9%)
Query: 25 ELTDDEQF----RECEMDTYKSSGPGGQHRNKRESAVRLKHVPT 64
EL DD Q ++ +D Y+SSG GGQH NK ESAVR+ H+PT
Sbjct: 224 ELDDDIQINIDEKDLRIDYYRSSGAGGQHVNKTESAVRITHIPT 267
>sp|Q89AC4|RF2_BUCBP Peptide chain release factor 2 OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=prfB PE=3 SV=2
Length = 366
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 29/40 (72%)
Query: 29 DEQFRECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSV 68
D R+ ++D Y++SG GGQH NK ESAVR++H+PT V
Sbjct: 234 DINTRDLKIDVYRASGAGGQHVNKTESAVRIRHLPTGIVV 273
>sp|A8EYR1|RF1_RICCK Peptide chain release factor 1 OS=Rickettsia canadensis (strain
McKiel) GN=prfA PE=3 SV=1
Length = 355
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 33 RECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSVNLD----AYLPPPQLLQILPPKFT 88
++ +DTY+SSG GGQH N SAVR+ H+PT +V L + + L+IL +
Sbjct: 218 KDLRIDTYRSSGAGGQHVNTTNSAVRITHIPTGITVALQDEKSQHKNKAKALKILRARIY 277
Query: 89 IRCSEVGPQIRPNNPK 104
Q R NN +
Sbjct: 278 EEERRKKEQKRANNRR 293
>sp|A8EWG5|RF2_ARCB4 Peptide chain release factor 2 OS=Arcobacter butzleri (strain
RM4018) GN=prfB PE=3 SV=1
Length = 365
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 33 RECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSV 68
++ +DTY++SG GGQH NK ESA+R+ H+PT V
Sbjct: 236 KDIRIDTYRASGAGGQHVNKTESAIRITHIPTGIVV 271
>sp|Q1RJT5|RF1_RICBR Peptide chain release factor 1 OS=Rickettsia bellii (strain
RML369-C) GN=prfA PE=3 SV=1
Length = 357
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 33 RECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSVNLD----AYLPPPQLLQILPPKFT 88
++ +DTY++SG GGQH N +SAVR+ H+PT +V L + + L+IL +
Sbjct: 221 KDLRIDTYRASGAGGQHVNTTDSAVRITHIPTGITVALQDEKSQHKNKAKALKILRARIY 280
Query: 89 IRCSEVGPQIRPNNPK 104
Q R NN +
Sbjct: 281 EEERRKKDQERANNRR 296
>sp|A8GXI1|RF1_RICB8 Peptide chain release factor 1 OS=Rickettsia bellii (strain OSU
85-389) GN=prfA PE=3 SV=1
Length = 357
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 33 RECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSVNLD----AYLPPPQLLQILPPKFT 88
++ +DTY++SG GGQH N +SAVR+ H+PT +V L + + L+IL +
Sbjct: 221 KDLRIDTYRASGAGGQHVNTTDSAVRITHIPTGITVALQDEKSQHKNKAKALKILRARIY 280
Query: 89 IRCSEVGPQIRPNNPK 104
Q R NN +
Sbjct: 281 EEERRKKDQERANNRR 296
>sp|Q9PRE0|RF1_UREPA Peptide chain release factor 1 OS=Ureaplasma parvum serovar 3
(strain ATCC 700970) GN=prfA PE=3 SV=1
Length = 359
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 34 ECEMDTYKSSGPGGQHRNKRESAVRLKHVPTA 65
E +DTY++SG GGQH N+ ESAVR+ H+PT
Sbjct: 222 ELRIDTYRASGAGGQHVNRTESAVRITHIPTG 253
>sp|B1AHY9|RF1_UREP2 Peptide chain release factor 1 OS=Ureaplasma parvum serovar 3
(strain ATCC 27815 / 27 / NCTC 11736) GN=prfA PE=3 SV=1
Length = 359
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 34 ECEMDTYKSSGPGGQHRNKRESAVRLKHVPTA 65
E +DTY++SG GGQH N+ ESAVR+ H+PT
Sbjct: 222 ELRIDTYRASGAGGQHVNRTESAVRITHIPTG 253
>sp|Q30TP0|RF2_SULDN Peptide chain release factor 2 OS=Sulfurimonas denitrificans
(strain ATCC 33889 / DSM 1251) GN=prfB PE=3 SV=1
Length = 365
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 33 RECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSV 68
R+ +DTY+SSG GGQH NK ESA+R+ H+ T V
Sbjct: 236 RDIRVDTYRSSGAGGQHVNKTESAIRITHIATGVVV 271
>sp|Q0SR12|RF2_CLOPS Peptide chain release factor 2 OS=Clostridium perfringens (strain
SM101 / Type A) GN=prfB PE=3 SV=1
Length = 364
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 25 ELTDDEQFR----ECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSV 68
ELT D+ + +DTY++ G GGQH NK ESAVR+ H+PT V
Sbjct: 225 ELTSDQDIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVV 272
>sp|A7ZE19|RF2_CAMC1 Peptide chain release factor 2 OS=Campylobacter concisus (strain
13826) GN=prfB PE=3 SV=1
Length = 366
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 28/36 (77%)
Query: 33 RECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSV 68
++ ++DTY++SG GGQH NK ESA+R+ H+PT V
Sbjct: 236 KDLKIDTYRASGAGGQHVNKTESAIRITHIPTGIVV 271
>sp|Q0TNE1|RF2_CLOP1 Peptide chain release factor 2 OS=Clostridium perfringens (strain
ATCC 13124 / NCTC 8237 / Type A) GN=prfB PE=3 SV=2
Length = 362
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 25 ELTDDEQFR----ECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSV 68
ELT D+ + +DTY++ G GGQH NK ESAVR+ H+PT V
Sbjct: 223 ELTSDQDIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVV 270
>sp|B1KFR6|RF2_SHEWM Peptide chain release factor 2 OS=Shewanella woodyi (strain ATCC
51908 / MS32) GN=prfB PE=3 SV=1
Length = 365
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 34 ECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSV 68
+ +DTY++SG GGQH NK ESA+R+ HVPT + V
Sbjct: 238 DLRIDTYRASGAGGQHVNKTESAIRITHVPTNTVV 272
>sp|A9NF23|RF2_ACHLI Peptide chain release factor 2 OS=Acholeplasma laidlawii (strain
PG-8A) GN=prfB PE=3 SV=1
Length = 365
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 36/68 (52%), Gaps = 10/68 (14%)
Query: 3 FLSCNYNDNCSSTSSSSKKNYFELTDDEQFRECEMDTYKSSGPGGQHRNKRESAVRLKHV 62
F+SC+ TS EL DD+ MDT++SSG GGQ N SAVRL H+
Sbjct: 214 FVSCDVAPEIDETSE------VELKDDD----IRMDTFQSSGAGGQSVNTTYSAVRLTHI 263
Query: 63 PTASSVNL 70
PT VN+
Sbjct: 264 PTGIVVNI 271
>sp|Q7MAP4|RF2_WOLSU Peptide chain release factor 2 OS=Wolinella succinogenes (strain
ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC
602W) GN=prfB PE=3 SV=1
Length = 368
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 33 RECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSV 68
++ +DTY++SG GGQH NK ESA+R+ H+PT V
Sbjct: 236 KDLRLDTYRASGAGGQHVNKTESAIRITHIPTGIVV 271
>sp|Q68WK7|RF1_RICTY Peptide chain release factor 1 OS=Rickettsia typhi (strain ATCC
VR-144 / Wilmington) GN=prfA PE=3 SV=1
Length = 355
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 28/38 (73%)
Query: 33 RECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSVNL 70
++ +DTY+SSG GGQH N +SAVR+ H+PT +V L
Sbjct: 218 KDLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGITVAL 255
>sp|Q8EWY5|RF1_MYCPE Peptide chain release factor 1 OS=Mycoplasma penetrans (strain
HF-2) GN=prfA PE=3 SV=1
Length = 359
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 26/32 (81%)
Query: 34 ECEMDTYKSSGPGGQHRNKRESAVRLKHVPTA 65
+ ++DTY++SG GGQH NK ESAVR+ H+PT
Sbjct: 222 DLKIDTYRASGAGGQHINKTESAVRITHIPTG 253
>sp|B9L0E3|RF2_THERP Peptide chain release factor 2 OS=Thermomicrobium roseum (strain
ATCC 27502 / DSM 5159 / P-2) GN=prfB PE=3 SV=1
Length = 374
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 24 FELTDDEQFRE--CEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSVN 69
E DD + RE +DT+++SG GGQH NK ESAVR+ H+PT V
Sbjct: 222 VEEDDDVEIREEDIRIDTFRASGHGGQHVNKTESAVRITHLPTGIVVT 269
>sp|C4K0C9|RF1_RICPU Peptide chain release factor 1 OS=Rickettsia peacockii (strain
Rustic) GN=prfA PE=3 SV=1
Length = 355
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 28/38 (73%)
Query: 33 RECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSVNL 70
++ +DTY++SG GGQH N +SAVR+ H+PT +V L
Sbjct: 218 KDLRIDTYRASGAGGQHVNTTDSAVRITHIPTGITVAL 255
>sp|Q92HK9|RF1_RICCN Peptide chain release factor 1 OS=Rickettsia conorii (strain ATCC
VR-613 / Malish 7) GN=prfA PE=3 SV=1
Length = 355
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 28/38 (73%)
Query: 33 RECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSVNL 70
++ +DTY++SG GGQH N +SAVR+ H+PT +V L
Sbjct: 218 KDLRIDTYRASGAGGQHVNTTDSAVRITHIPTGITVAL 255
>sp|C3PNN0|RF1_RICAE Peptide chain release factor 1 OS=Rickettsia africae (strain ESF-5)
GN=prfA PE=3 SV=1
Length = 355
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 28/38 (73%)
Query: 33 RECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSVNL 70
++ +DTY++SG GGQH N +SAVR+ H+PT +V L
Sbjct: 218 KDLRIDTYRASGAGGQHVNTTDSAVRITHIPTGITVAL 255
>sp|B4RCR3|RF2_PHEZH Peptide chain release factor 2 OS=Phenylobacterium zucineum (strain
HLK1) GN=prfB PE=3 SV=1
Length = 369
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 34 ECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSV 68
+ DTY++SG GGQH NK +SAVRL H+PT +V
Sbjct: 233 DVRTDTYRASGAGGQHVNKTDSAVRLTHIPTGIAV 267
>sp|B0SXB7|RF2_CAUSK Peptide chain release factor 2 OS=Caulobacter sp. (strain K31)
GN=prfB PE=3 SV=1
Length = 367
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 34 ECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSV 68
+ DTY++SG GGQH NK +SAVRL H+PT +V
Sbjct: 233 DVRTDTYRASGAGGQHINKTDSAVRLTHIPTGIAV 267
>sp|Q4ULG0|RF1_RICFE Peptide chain release factor 1 OS=Rickettsia felis (strain ATCC
VR-1525 / URRWXCal2) GN=prfA PE=3 SV=1
Length = 355
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 28/38 (73%)
Query: 33 RECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSVNL 70
++ +DTY++SG GGQH N +SAVR+ H+PT +V L
Sbjct: 218 KDLRIDTYRASGAGGQHVNTTDSAVRITHIPTGITVAL 255
>sp|A8F1S1|RF1_RICM5 Peptide chain release factor 1 OS=Rickettsia massiliae (strain
Mtu5) GN=prfA PE=3 SV=1
Length = 361
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 28/38 (73%)
Query: 33 RECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSVNL 70
++ +DTY++SG GGQH N +SAVR+ H+PT +V L
Sbjct: 218 KDLRIDTYRASGAGGQHVNTTDSAVRITHIPTGITVAL 255
>sp|B5ZAH6|RF1_UREU1 Peptide chain release factor 1 OS=Ureaplasma urealyticum serovar 10
(strain ATCC 33699 / Western) GN=prfA PE=3 SV=1
Length = 359
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 34 ECEMDTYKSSGPGGQHRNKRESAVRLKHVPTA 65
+ +DTY++SG GGQH N+ ESAVR+ H+PT
Sbjct: 222 DLRIDTYRASGAGGQHVNRTESAVRITHIPTG 253
>sp|Q9A752|RF2_CAUCR Peptide chain release factor 2 OS=Caulobacter crescentus (strain
ATCC 19089 / CB15) GN=prfB PE=3 SV=1
Length = 371
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 34 ECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSV 68
+ DTY++SG GGQH NK +SAVRL H+PT +V
Sbjct: 233 DVRTDTYRASGAGGQHINKTDSAVRLTHIPTGIAV 267
>sp|B8GWM3|RF2_CAUCN Peptide chain release factor 2 OS=Caulobacter crescentus (strain
NA1000 / CB15N) GN=prfB PE=3 SV=1
Length = 371
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 34 ECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSV 68
+ DTY++SG GGQH NK +SAVRL H+PT +V
Sbjct: 233 DVRTDTYRASGAGGQHINKTDSAVRLTHIPTGIAV 267
>sp|A8GNQ4|RF1_RICAH Peptide chain release factor 1 OS=Rickettsia akari (strain
Hartford) GN=prfA PE=3 SV=1
Length = 355
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 28/38 (73%)
Query: 33 RECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSVNL 70
++ +DTY++SG GGQH N +SAVR+ H+PT +V L
Sbjct: 218 KDLRIDTYRASGAGGQHVNTTDSAVRITHIPTGITVAL 255
>sp|A3M6N7|RF1_ACIBT Peptide chain release factor 1 OS=Acinetobacter baumannii (strain
ATCC 17978 / NCDC KC 755) GN=prfA PE=3 SV=2
Length = 362
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 26/32 (81%)
Query: 37 MDTYKSSGPGGQHRNKRESAVRLKHVPTASSV 68
+DTY++SG GGQH NK +SAVR+ H+PT + V
Sbjct: 224 IDTYRASGAGGQHINKTDSAVRITHIPTGTVV 255
>sp|B0VM26|RF1_ACIBS Peptide chain release factor 1 OS=Acinetobacter baumannii (strain
SDF) GN=prfA PE=3 SV=1
Length = 362
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 26/32 (81%)
Query: 37 MDTYKSSGPGGQHRNKRESAVRLKHVPTASSV 68
+DTY++SG GGQH NK +SAVR+ H+PT + V
Sbjct: 224 IDTYRASGAGGQHINKTDSAVRITHIPTGTVV 255
>sp|B2HU82|RF1_ACIBC Peptide chain release factor 1 OS=Acinetobacter baumannii (strain
ACICU) GN=prfA PE=3 SV=1
Length = 362
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 26/32 (81%)
Query: 37 MDTYKSSGPGGQHRNKRESAVRLKHVPTASSV 68
+DTY++SG GGQH NK +SAVR+ H+PT + V
Sbjct: 224 IDTYRASGAGGQHINKTDSAVRITHIPTGTVV 255
>sp|A8GSC7|RF1_RICRS Peptide chain release factor 1 OS=Rickettsia rickettsii (strain
Sheila Smith) GN=prfA PE=3 SV=1
Length = 355
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 28/38 (73%)
Query: 33 RECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSVNL 70
++ +DTY++SG GGQH N +SAVR+ H+PT +V L
Sbjct: 218 KDLRIDTYRASGAGGQHVNTTDSAVRITHIPTGITVAL 255
>sp|B0BXT9|RF1_RICRO Peptide chain release factor 1 OS=Rickettsia rickettsii (strain
Iowa) GN=prfA PE=3 SV=1
Length = 355
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 28/38 (73%)
Query: 33 RECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSVNL 70
++ +DTY++SG GGQH N +SAVR+ H+PT +V L
Sbjct: 218 KDLRIDTYRASGAGGQHVNTTDSAVRITHIPTGITVAL 255
>sp|B0V7E0|RF1_ACIBY Peptide chain release factor 1 OS=Acinetobacter baumannii (strain
AYE) GN=prfA PE=3 SV=1
Length = 362
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 26/32 (81%)
Query: 37 MDTYKSSGPGGQHRNKRESAVRLKHVPTASSV 68
+DTY++SG GGQH NK +SAVR+ H+PT + V
Sbjct: 224 IDTYRASGAGGQHINKTDSAVRITHIPTGTVV 255
>sp|B7IBA1|RF1_ACIB5 Peptide chain release factor 1 OS=Acinetobacter baumannii (strain
AB0057) GN=prfA PE=3 SV=1
Length = 362
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 26/32 (81%)
Query: 37 MDTYKSSGPGGQHRNKRESAVRLKHVPTASSV 68
+DTY++SG GGQH NK +SAVR+ H+PT + V
Sbjct: 224 IDTYRASGAGGQHINKTDSAVRITHIPTGTVV 255
>sp|B7H0L9|RF1_ACIB3 Peptide chain release factor 1 OS=Acinetobacter baumannii (strain
AB307-0294) GN=prfA PE=3 SV=1
Length = 362
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 26/32 (81%)
Query: 37 MDTYKSSGPGGQHRNKRESAVRLKHVPTASSV 68
+DTY++SG GGQH NK +SAVR+ H+PT + V
Sbjct: 224 IDTYRASGAGGQHINKTDSAVRITHIPTGTVV 255
>sp|Q9ZD21|RF1_RICPR Peptide chain release factor 1 OS=Rickettsia prowazekii (strain
Madrid E) GN=prfA PE=3 SV=1
Length = 355
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 28/38 (73%)
Query: 33 RECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSVNL 70
++ +DTY++SG GGQH N +SAVR+ H+PT +V L
Sbjct: 218 KDLRIDTYRASGAGGQHVNTTDSAVRITHIPTGITVAL 255
>sp|A1JPL5|RF2_YERE8 Peptide chain release factor 2 OS=Yersinia enterocolitica serotype
O:8 / biotype 1B (strain 8081) GN=prfB PE=3 SV=1
Length = 365
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 15 TSSSSKKNYFELTDDEQFR----ECEMDTYKSSGPGGQHRNKRESAVRLKHVPT 64
TS SS Y E+ DD + +D Y++SG GGQH NK ESAVR+ H+PT
Sbjct: 215 TSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNKTESAVRITHIPT 268
>sp|C5CGS4|RF2_KOSOT Peptide chain release factor 2 OS=Kosmotoga olearia (strain TBF
19.5.1) GN=prfB PE=3 SV=1
Length = 370
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 4/58 (6%)
Query: 15 TSSSSKKNYFELTDDEQF----RECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSV 68
TS +S + E+ DD + + ++DTY++ G GGQH N+ ESAVR+ H+PT V
Sbjct: 212 TSFASVSVFPEMDDDVEIDIRPEDLKIDTYRAGGAGGQHVNRTESAVRITHIPTGIVV 269
>sp|A4SV43|RF1_POLSQ Peptide chain release factor 1 OS=Polynucleobacter necessarius
subsp. asymbioticus (strain DSM 18221 / CIP 109841 /
QLW-P1DMWA-1) GN=prfA PE=3 SV=1
Length = 359
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 27/35 (77%)
Query: 34 ECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSV 68
E +DT+++SG GGQH NK +SAVR+ H+PT + V
Sbjct: 221 ELRIDTFRASGAGGQHINKTDSAVRITHIPTGTVV 255
>sp|A5IED7|RF1_LEGPC Peptide chain release factor 1 OS=Legionella pneumophila (strain
Corby) GN=prfA PE=3 SV=1
Length = 362
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 37 MDTYKSSGPGGQHRNKRESAVRLKHVPTASSV 68
+DTY+SSG GGQH NK +SA+R+ H+PT V
Sbjct: 226 IDTYRSSGAGGQHVNKTDSAIRITHIPTGVVV 257
>sp|B2V5M0|RF2_SULSY Peptide chain release factor 2 OS=Sulfurihydrogenibium sp. (strain
YO3AOP1) GN=prfB PE=3 SV=1
Length = 369
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 37 MDTYKSSGPGGQHRNKRESAVRLKHVPTASSV 68
+DTY++SG GGQH NK +SAVR+ H+PT V
Sbjct: 240 IDTYRASGAGGQHVNKTDSAVRITHIPTGIVV 271
>sp|Q5WUB1|RF1_LEGPL Peptide chain release factor 1 OS=Legionella pneumophila (strain
Lens) GN=prfA PE=3 SV=1
Length = 362
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 37 MDTYKSSGPGGQHRNKRESAVRLKHVPTASSV 68
+DTY+SSG GGQH NK +SA+R+ H+PT V
Sbjct: 226 IDTYRSSGAGGQHVNKTDSAIRITHIPTGVVV 257
>sp|Q5ZT29|RF1_LEGPH Peptide chain release factor 1 OS=Legionella pneumophila subsp.
pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM
7513) GN=prfA PE=3 SV=1
Length = 362
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 37 MDTYKSSGPGGQHRNKRESAVRLKHVPTASSV 68
+DTY+SSG GGQH NK +SA+R+ H+PT V
Sbjct: 226 IDTYRSSGAGGQHVNKTDSAIRITHIPTGVVV 257
>sp|Q5X2V3|RF1_LEGPA Peptide chain release factor 1 OS=Legionella pneumophila (strain
Paris) GN=prfA PE=3 SV=1
Length = 362
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 37 MDTYKSSGPGGQHRNKRESAVRLKHVPTASSV 68
+DTY+SSG GGQH NK +SA+R+ H+PT V
Sbjct: 226 IDTYRSSGAGGQHVNKTDSAIRITHIPTGVVV 257
>sp|Q3BUB7|RF2_XANC5 Peptide chain release factor 2 OS=Xanthomonas campestris pv.
vesicatoria (strain 85-10) GN=prfB PE=3 SV=1
Length = 374
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 24/31 (77%)
Query: 38 DTYKSSGPGGQHRNKRESAVRLKHVPTASSV 68
D Y+SSG GGQH NK ESAVR+ H+PT + V
Sbjct: 242 DVYRSSGAGGQHVNKTESAVRITHIPTNTVV 272
>sp|A4VPB9|RF1_PSEU5 Peptide chain release factor 1 OS=Pseudomonas stutzeri (strain
A1501) GN=prfA PE=3 SV=1
Length = 360
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 34 ECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSV 68
E +DTY+SSG GGQH NK +SA+R+ H+PT V
Sbjct: 223 ELRIDTYRSSGAGGQHVNKTDSAIRITHLPTGIVV 257
>sp|Q7VIE6|RF2_HELHP Peptide chain release factor 2 OS=Helicobacter hepaticus (strain
ATCC 51449 / 3B1) GN=prfB PE=3 SV=1
Length = 366
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 25 ELTDDEQF----RECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASSV 68
EL DD ++ +DTY++SG GGQH NK ESA+R+ H PT V
Sbjct: 224 ELDDDINIEIEDKDIRIDTYRASGAGGQHVNKTESAIRITHFPTGIVV 271
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,913,191
Number of Sequences: 539616
Number of extensions: 1754212
Number of successful extensions: 5300
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 4352
Number of HSP's gapped (non-prelim): 959
length of query: 128
length of database: 191,569,459
effective HSP length: 94
effective length of query: 34
effective length of database: 140,845,555
effective search space: 4788748870
effective search space used: 4788748870
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)