RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 045445
         (128 letters)



>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 112

 Score = 43.8 bits (103), Expect = 2e-07
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 34 ECEMDTYKSSGPGGQHRNKRESAVRLKHVPTASS 67
             +   +SSGPGGQ+ NK  S   ++    ++ 
Sbjct: 21 RLSISYCRSSGPGGQNVNKVNSKAEVRFHLASAD 54


>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
           {Escherichia coli [TaxId: 562]}
          Length = 362

 Score = 41.1 bits (96), Expect = 9e-06
 Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query: 14  STSSSSKKNYFELTDDEQF----RECEMDTYKSSGPGGQHRNKRESAVRLKHVPT 64
            TS SS   Y E+ DD        +  +D Y++SG GGQH N+ ESAVR+ H+PT
Sbjct: 211 HTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPT 265


>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
           {Thermotoga maritima [TaxId: 2336]}
          Length = 333

 Score = 37.4 bits (86), Expect = 2e-04
 Identities = 16/32 (50%), Positives = 26/32 (81%)

Query: 33  RECEMDTYKSSGPGGQHRNKRESAVRLKHVPT 64
            + +++T+++SG GGQ+ NK ESAVR+ H+PT
Sbjct: 196 EDLKIETFRASGHGGQYVNKTESAVRITHLPT 227


>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1
           {Escherichia coli [TaxId: 562]}
          Length = 344

 Score = 36.6 bits (84), Expect = 3e-04
 Identities = 16/31 (51%), Positives = 24/31 (77%)

Query: 34  ECEMDTYKSSGPGGQHRNKRESAVRLKHVPT 64
           +  +DT++SSG GGQH N  +SA+R+ H+PT
Sbjct: 211 DLRIDTFRSSGAGGQHVNTTDSAIRITHLPT 241


>d2fmla1 a.4.5.68 (A:205-268) Hypothetical protein EF2700,
          C-terminal domain {Enterococcus faecalis [TaxId: 1351]}
          Length = 64

 Score = 24.1 bits (52), Expect = 2.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 77 PQLLQILPPKFTIR 90
          PQ+LQ+L   FTI 
Sbjct: 1  PQVLQVLGKDFTIT 14


>d1ejxc2 c.1.9.2 (C:1130-1422,C:1476-1567) alpha-subunit of urease,
           catalytic domain {Klebsiella aerogenes [TaxId: 28451]}
          Length = 385

 Score = 24.3 bits (53), Expect = 6.2
 Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 3/40 (7%)

Query: 37  MDTYKSSGPGGQHRNKRESAVRLKHVPTASSVNLDAYLPP 76
           + T+ + G GG H     +A    ++   SS N    LP 
Sbjct: 139 IHTFHTEGAGGGHAPDIITACAHPNI-LPSSTN--PTLPY 175


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.132    0.389 

Gapped
Lambda     K      H
   0.267   0.0611    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 448,937
Number of extensions: 18787
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 8
Length of query: 128
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 53
Effective length of database: 1,377,846
Effective search space: 73025838
Effective search space used: 73025838
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.5 bits)