Query 045446
Match_columns 263
No_of_seqs 234 out of 2160
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 23:33:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045446.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045446hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 99.8 9.1E-20 3.1E-24 160.8 19.8 136 30-169 42-180 (438)
2 1pw4_A Glycerol-3-phosphate tr 99.8 1.9E-18 6.6E-23 152.7 13.3 166 29-198 43-212 (451)
3 4aps_A DI-OR tripeptide H+ sym 99.8 1E-17 3.6E-22 150.0 17.7 147 38-191 38-194 (491)
4 2gfp_A EMRD, multidrug resista 99.8 4.7E-18 1.6E-22 147.2 14.6 160 30-196 16-178 (375)
5 4gc0_A D-xylose-proton symport 99.7 2.8E-17 9.7E-22 147.1 10.9 160 33-197 31-224 (491)
6 2xut_A Proton/peptide symporte 99.7 2.7E-16 9.2E-21 142.0 14.6 149 38-192 37-197 (524)
7 1pw4_A Glycerol-3-phosphate tr 99.5 2.5E-13 8.6E-18 119.8 10.8 157 30-191 268-431 (451)
8 2cfq_A Lactose permease; trans 99.3 2.2E-13 7.5E-18 119.9 1.7 141 36-180 29-174 (417)
9 4aps_A DI-OR tripeptide H+ sym 99.3 1.1E-11 3.6E-16 110.9 10.9 158 35-192 304-471 (491)
10 4gc0_A D-xylose-proton symport 99.3 1E-10 3.4E-15 104.4 16.9 165 30-198 293-468 (491)
11 2cfq_A Lactose permease; trans 99.3 3E-11 1E-15 106.2 11.7 133 50-189 260-395 (417)
12 3o7q_A L-fucose-proton symport 99.2 4.3E-11 1.5E-15 105.1 12.0 130 31-169 275-407 (438)
13 2xut_A Proton/peptide symporte 98.9 2.2E-08 7.5E-13 90.0 13.4 114 51-169 337-467 (524)
14 2gfp_A EMRD, multidrug resista 98.7 1.6E-10 5.5E-15 99.6 -5.0 132 33-169 218-352 (375)
15 2g9p_A Antimicrobial peptide l 60.4 3.5 0.00012 19.5 1.0 14 67-80 2-15 (26)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.84 E-value=9.1e-20 Score=160.80 Aligned_cols=136 Identities=16% Similarity=0.118 Sum_probs=120.3
Q ss_pred cccchhchHHHHHHcCCCHHHHHHHHHHHHHhhhh-hhHHHhhhcccChHHHHHHHHHHHHHHHHHHHHHHhccCCCchH
Q 045446 30 NYTFSNYSDALKSLMALTQLQLNNLSVAKDVGKAF-GLLSGLASDRLPTSAILIIGSLEGLIGYGVQWLVVSEKIHPLPY 108 (263)
Q Consensus 30 ~~~~~~~~p~l~~~~~~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 108 (263)
....+.+.|.+++++|.|.++.+++.+...++..+ .++.|+++||+|||+++..+.+..+++.+..+.. ..++ ++
T Consensus 42 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~--~~ 117 (438)
T 3o7q_A 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPA--AEIM--NY 117 (438)
T ss_dssp HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH--HHTT--CH
T ss_pred HHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc--cccc--cH
Confidence 34667778999999999999999999999999887 9999999999999999999999999998854322 3333 56
Q ss_pred HHHHHHHHHHhhchhhhhhhHHHHHhhhcC-CCCCchHHHHHhhhhhHHHHHHHHHHHhh-CC
Q 045446 109 WQMCIFLCMGGNSTTWMNTAVLVTCMRNFP-KNRGPVSGILKGYVGLSTAIFTDICTALF-SS 169 (263)
Q Consensus 109 ~~l~~~~~l~g~g~~~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~-~~ 169 (263)
+.+++.|+++|++.+...+...+.+.|++| ++|++++|+.+...++|..+++.+++.+. +.
T Consensus 118 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 180 (438)
T 3o7q_A 118 TLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred HHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 889999999999999999999999999999 67999999999999999999999999887 44
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.77 E-value=1.9e-18 Score=152.72 Aligned_cols=166 Identities=14% Similarity=0.036 Sum_probs=130.5
Q ss_pred CcccchhchHHHHHHcCCCHHHHHHHHHHHHHhhhh-hhHHHhhhcccChHHHHHHHHHHHHHHHHHHHHHHhccCCCch
Q 045446 29 NNYTFSNYSDALKSLMALTQLQLNNLSVAKDVGKAF-GLLSGLASDRLPTSAILIIGSLEGLIGYGVQWLVVSEKIHPLP 107 (263)
Q Consensus 29 ~~~~~~~~~p~l~~~~~~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 107 (263)
..+.++.+.|.+.+++ .|..+.+++.+...++..+ .++.|+++||+|||+++..+.++.+++.+........ ++ +
T Consensus 43 ~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-~~--~ 118 (451)
T 1pw4_A 43 VRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA-TS--S 118 (451)
T ss_dssp HHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH-HS--S
T ss_pred HHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhc-cc--c
Confidence 4456677789899999 9999999998888888888 9999999999999999999999999998844321000 33 3
Q ss_pred HHHHHHHHHHHhhchhhhhhhHHHHHhhhcC-CCCCchHHHHHhhhhhHHHHHHHHHHHhhCCCh-hHHHHH-HHHHHHH
Q 045446 108 YWQMCIFLCMGGNSTTWMNTAVLVTCMRNFP-KNRGPVSGILKGYVGLSTAIFTDICTALFSSKP-SAFLLI-LAIVPAV 184 (263)
Q Consensus 108 ~~~l~~~~~l~g~g~~~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~-~~~~~~-~~~~~~~ 184 (263)
++.+++.|+++|++.+...+...+.+.|++| ++|++++|+.....++|..+++.+++.+.+... |+..+. .+....+
T Consensus 119 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~ 198 (451)
T 1pw4_A 119 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAIL 198 (451)
T ss_dssp SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4778889999999999999999999999999 679999999999999999999999988765432 444444 4444444
Q ss_pred HHHHHHhhcccCCC
Q 045446 185 ICLTAVLFLHENQP 198 (263)
Q Consensus 185 ~~~~~~~~~~~~~~ 198 (263)
..++.....+++++
T Consensus 199 ~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 199 VALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHHHHHHCCCSST
T ss_pred HHHHHHhhccCCHh
Confidence 44445555665443
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.77 E-value=1e-17 Score=150.00 Aligned_cols=147 Identities=14% Similarity=0.054 Sum_probs=119.7
Q ss_pred HHHHHH-----cCCCHHHHHHHHHHHHHhhhh-hhHHHhhhcc-cChHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHH
Q 045446 38 DALKSL-----MALTQLQLNNLSVAKDVGKAF-GLLSGLASDR-LPTSAILIIGSLEGLIGYGVQWLVVSEKIHPLPYWQ 110 (263)
Q Consensus 38 p~l~~~-----~~~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr-~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 110 (263)
+.++++ +|.|.++.+++.+...++..+ .++.|+++|| +|||+++..+.++..++.+ .+..++ +++.
T Consensus 38 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~-----~~~~~~--~~~~ 110 (491)
T 4aps_A 38 YYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHI-----VLALPF--GASA 110 (491)
T ss_dssp HHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH-----HHHSCC--STTH
T ss_pred HHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-----HHHHhh--hHHH
Confidence 445565 999999999988888888887 9999999999 8999999999999998888 555554 3477
Q ss_pred HHHHHHHHhhchhhhhhhHHHHHhhhcC-CC--CCchHHHHHhhhhhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHH
Q 045446 111 MCIFLCMGGNSTTWMNTAVLVTCMRNFP-KN--RGPVSGILKGYVGLSTAIFTDICTALFSSKPSAFLLILAIVPAVICL 187 (263)
Q Consensus 111 l~~~~~l~g~g~~~~~~~~~~~~~~~fp-~~--rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 187 (263)
+++.|+++|+|.+...+...+.+.|++| ++ |+++.++.+...++|..++|.+++.+.+...|+..+.+.....+++.
T Consensus 111 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~ 190 (491)
T 4aps_A 111 LFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGL 190 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999998 66 66678878888999999999999988875445555555544444444
Q ss_pred HHHh
Q 045446 188 TAVL 191 (263)
Q Consensus 188 ~~~~ 191 (263)
+...
T Consensus 191 ~~~~ 194 (491)
T 4aps_A 191 LVYY 194 (491)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.77 E-value=4.7e-18 Score=147.17 Aligned_cols=160 Identities=11% Similarity=-0.011 Sum_probs=128.5
Q ss_pred cccchhchHHHHHHcCCCHHHHHHHHHHHHHhhhh-hhHHHhhhcccChHHHHHHHHHHHHHHHHHHHHHHhccCCCchH
Q 045446 30 NYTFSNYSDALKSLMALTQLQLNNLSVAKDVGKAF-GLLSGLASDRLPTSAILIIGSLEGLIGYGVQWLVVSEKIHPLPY 108 (263)
Q Consensus 30 ~~~~~~~~p~l~~~~~~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 108 (263)
...+....|.+++++|.|+++.+++.+...++..+ .++.|+++||+|||+++..+.+...++...... .+ ++
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-----~~--~~ 88 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVT-----TS--SL 88 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHH-----HH--HH
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH-----hc--cH
Confidence 33455667888999999999999988888888887 999999999999999999999999988884433 22 56
Q ss_pred HHHHHHHHHHhhchhhhhhhHHHHHhhhcC-CCCCchHHHHHhhhhhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHH
Q 045446 109 WQMCIFLCMGGNSTTWMNTAVLVTCMRNFP-KNRGPVSGILKGYVGLSTAIFTDICTALFSSKPSAFLLILAIVPAVICL 187 (263)
Q Consensus 109 ~~l~~~~~l~g~g~~~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 187 (263)
+.+++.|+++|++.+...+.....+.|++| ++|++++++.+...++|..++|.+.+.+.+...|+..+.......++..
T Consensus 89 ~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 168 (375)
T 2gfp_A 89 TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVT 168 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999998 7899999999999999999999999988765445555554444333333
Q ss_pred H-HHhhcccC
Q 045446 188 T-AVLFLHEN 196 (263)
Q Consensus 188 ~-~~~~~~~~ 196 (263)
+ .....+|+
T Consensus 169 ~~~~~~~~~~ 178 (375)
T 2gfp_A 169 FSMARWMPET 178 (375)
T ss_dssp CCCCCSSCCC
T ss_pred HHHHHHCccc
Confidence 3 33344443
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.71 E-value=2.8e-17 Score=147.09 Aligned_cols=160 Identities=15% Similarity=0.122 Sum_probs=121.1
Q ss_pred chhchHHHHHHcCC--------CHHHHHHHHHHHHHhhhh-hhHHHhhhcccChHHHHHHHHHHHHHHHHHHHHHHhccC
Q 045446 33 FSNYSDALKSLMAL--------TQLQLNNLSVAKDVGKAF-GLLSGLASDRLPTSAILIIGSLEGLIGYGVQWLVVSEKI 103 (263)
Q Consensus 33 ~~~~~p~l~~~~~~--------s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ 103 (263)
.+...|.++++++. +.++.+++.+.+.+|..+ ++++|+++||+|||+++.++.+++.++.+ .++..
T Consensus 31 i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i-----~~a~~ 105 (491)
T 4gc0_A 31 ISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGV-----GSAWP 105 (491)
T ss_dssp GGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-----HHHCT
T ss_pred HHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-----HHHHH
Confidence 44556777777632 234566777888889888 89999999999999999999999999998 55531
Q ss_pred C----------------CchHHHHHHHHHHHhhchhhhhhhHHHHHhhhcC-CCCCchHHHHHhhhhhHHHHHHHHHHHh
Q 045446 104 H----------------PLPYWQMCIFLCMGGNSTTWMNTAVLVTCMRNFP-KNRGPVSGILKGYVGLSTAIFTDICTAL 166 (263)
Q Consensus 104 ~----------------~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l 166 (263)
+ ..++++++++|+++|+|.|...+.+..++.|..| ++||+..++.+.....|..+++.+....
T Consensus 106 ~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~ 185 (491)
T 4gc0_A 106 ELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFI 185 (491)
T ss_dssp TTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhh
Confidence 1 2356889999999999999999999999999999 6799999999988888887777666554
Q ss_pred hCC--------ChhHHHHHHHHHHHHHHHHHHhhcccCC
Q 045446 167 FSS--------KPSAFLLILAIVPAVICLTAVLFLHENQ 197 (263)
Q Consensus 167 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (263)
... .+|+..+.....+.++.+....+.+|.|
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp 224 (491)
T 4gc0_A 186 ARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESP 224 (491)
T ss_dssp HTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCH
T ss_pred ccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCCh
Confidence 432 3455555555555555555555555544
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.69 E-value=2.7e-16 Score=142.02 Aligned_cols=149 Identities=13% Similarity=0.034 Sum_probs=118.8
Q ss_pred HHHHHHcC------CCHHHHHHHHHHHHHhhhh-hhHHHhhhccc-ChHHHHHHHHHHHHHHHHHHHHHHhccCCCchHH
Q 045446 38 DALKSLMA------LTQLQLNNLSVAKDVGKAF-GLLSGLASDRL-PTSAILIIGSLEGLIGYGVQWLVVSEKIHPLPYW 109 (263)
Q Consensus 38 p~l~~~~~------~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~-G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 109 (263)
+.+++++| .|..+.+++.....++..+ .++.|+++||+ |||+++..+.++..++.+. ...++ .+++
T Consensus 37 ~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~-----~~~~~-~~~~ 110 (524)
T 2xut_A 37 PFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAF-----LAIFE-HSVQ 110 (524)
T ss_dssp HHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHH-----HHHTS-SCHH
T ss_pred HHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH-----HHHhc-ccHH
Confidence 44678899 9999999988888888887 89999999999 9999999999998888873 33333 1457
Q ss_pred HHHHHHHHHhhchhhhhhhHHHHHhhhcC-CCCCchHHH---HHhhhhhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHH
Q 045446 110 QMCIFLCMGGNSTTWMNTAVLVTCMRNFP-KNRGPVSGI---LKGYVGLSTAIFTDICTALFSSKPSAFLLILAIVPAVI 185 (263)
Q Consensus 110 ~l~~~~~l~g~g~~~~~~~~~~~~~~~fp-~~rg~~~gi---~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~ 185 (263)
.+++.|+++|++.+...+...+.+.|++| ++|+++.+. .....++|..++|.+.+.+.+...|+..+.+.....++
T Consensus 111 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~ 190 (524)
T 2xut_A 111 GFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFV 190 (524)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 78889999999999999999999999999 678887776 88888899999999988887664455555555444444
Q ss_pred HHHHHhh
Q 045446 186 CLTAVLF 192 (263)
Q Consensus 186 ~~~~~~~ 192 (263)
..+....
T Consensus 191 ~~~~~~~ 197 (524)
T 2xut_A 191 ATVFFWL 197 (524)
T ss_dssp HHHHHHS
T ss_pred HHHHHHH
Confidence 4444433
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.46 E-value=2.5e-13 Score=119.78 Aligned_cols=157 Identities=11% Similarity=-0.038 Sum_probs=116.1
Q ss_pred cccchhchHHHHHH-cCCCHHHHHHHHHHHHHhhhh-hhHHHhhhccc--ChHHHHHHHHHHHH-HHHHHHHHHHhccCC
Q 045446 30 NYTFSNYSDALKSL-MALTQLQLNNLSVAKDVGKAF-GLLSGLASDRL--PTSAILIIGSLEGL-IGYGVQWLVVSEKIH 104 (263)
Q Consensus 30 ~~~~~~~~p~l~~~-~~~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~--G~r~~~~~g~~~~~-~g~~~~~~~~~~~~~ 104 (263)
.+.+..+.|.+.++ +|.++.+.+++.....++..+ .++.|++.||+ |+|+.+..+..+.. ++.. .....+
T Consensus 268 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 342 (451)
T 1pw4_A 268 RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATI-----VYWMNP 342 (451)
T ss_dssp HHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH-----HTTSCC
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH-----HHHHhc
Confidence 34455666776444 899999999988888888877 89999999999 99999888877665 5555 334433
Q ss_pred CchHHHHHHHHHHHhhchhhhhhhHHHHHhhhcC-CCCCchHHHHHhhhhh-HHHHHHHHHHHhhCCChhHHHHHHHHHH
Q 045446 105 PLPYWQMCIFLCMGGNSTTWMNTAVLVTCMRNFP-KNRGPVSGILKGYVGL-STAIFTDICTALFSSKPSAFLLILAIVP 182 (263)
Q Consensus 105 ~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~l-g~~i~~~l~~~l~~~~~~~~~~~~~~~~ 182 (263)
+.+.+.+.+..++.|++.+...+.......|.+| ++||++.|+.+....+ |..+++.+.+.+.+...+...+......
T Consensus 343 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 422 (451)
T 1pw4_A 343 AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGG 422 (451)
T ss_dssp TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3345666677778888888888888899999999 4599999999999999 9999999999988763333343333333
Q ss_pred HHHHHHHHh
Q 045446 183 AVICLTAVL 191 (263)
Q Consensus 183 ~~~~~~~~~ 191 (263)
.+++.+...
T Consensus 423 ~~~~~~~~~ 431 (451)
T 1pw4_A 423 SILAVILLI 431 (451)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.33 E-value=2.2e-13 Score=119.89 Aligned_cols=141 Identities=14% Similarity=0.080 Sum_probs=93.4
Q ss_pred chHH-HHHHcCCCHHHHHHHHHHHHHhhhh-hhHHHhhhcccChHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHH
Q 045446 36 YSDA-LKSLMALTQLQLNNLSVAKDVGKAF-GLLSGLASDRLPTSAILIIGSLEGLIGYGVQWLVVSEKIHPLPYWQMCI 113 (263)
Q Consensus 36 ~~p~-l~~~~~~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 113 (263)
+.|. +++++|.|..+.+++.+...++..+ +++.|+++||+|||+++..+.....++..... .....+.. ......
T Consensus 29 ~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~ 105 (417)
T 2cfq_A 29 FFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFF--IFIFGPLL-QYNILV 105 (417)
T ss_dssp THHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHH--HHTHHHHH-HTTCCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH--HHHHHHHH-HHHHHH
Confidence 3454 5677999999999988888888887 99999999999999999998877654322111 11111000 001223
Q ss_pred HHHHHhhchhhhhhhHHHHHhhhcC---CCCCchHHHHHhhhhhHHHHHHHHHHHhhCCChhHHHHHHHH
Q 045446 114 FLCMGGNSTTWMNTAVLVTCMRNFP---KNRGPVSGILKGYVGLSTAIFTDICTALFSSKPSAFLLILAI 180 (263)
Q Consensus 114 ~~~l~g~g~~~~~~~~~~~~~~~fp---~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~ 180 (263)
.+.+.+++.+..++.......++.+ ++|+.+.|.......+|..++|.+++.+.+.+ |+..+++..
T Consensus 106 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~-~~~~f~~~~ 174 (417)
T 2cfq_A 106 GSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTIN-NQFVFWLGS 174 (417)
T ss_dssp HHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHC-SHHHHTTTT
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhc-hhHHHHHHH
Confidence 4556666665555444444444443 35788899998888899999999988887543 344444443
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.30 E-value=1.1e-11 Score=110.87 Aligned_cols=158 Identities=5% Similarity=-0.049 Sum_probs=107.3
Q ss_pred hchHHH-HHHcCCCHHHHHHHHHHHHHhhhh-hhHHHhhhcccChHHHHH-----HHHHHHHHHHHHHHHHHhcc--CCC
Q 045446 35 NYSDAL-KSLMALTQLQLNNLSVAKDVGKAF-GLLSGLASDRLPTSAILI-----IGSLEGLIGYGVQWLVVSEK--IHP 105 (263)
Q Consensus 35 ~~~p~l-~~~~~~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~-----~g~~~~~~g~~~~~~~~~~~--~~~ 105 (263)
.+.|.+ ++.++.+..+.+++.....++..+ .++.|++.||+|||+... .+.++..++...+....... ..+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (491)
T 4aps_A 304 VVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGK 383 (491)
T ss_dssp THHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTT
T ss_pred HHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 334544 555677766666666666666665 889999999999986655 66666666655433221110 112
Q ss_pred chHHHHHHHHHHHhhchhhhhhhHHHHHhhhcC-CCCCchHHHHHhhhhhHHHHHHHHHHHhhCCChhHHHHHHHHHHHH
Q 045446 106 LPYWQMCIFLCMGGNSTTWMNTAVLVTCMRNFP-KNRGPVSGILKGYVGLSTAIFTDICTALFSSKPSAFLLILAIVPAV 184 (263)
Q Consensus 106 ~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ 184 (263)
.+.+.+.+..++.|++.+...+.......|.+| ++||+++|+.+....+|..+++.+.+.+.+.+.+..+...+....+
T Consensus 384 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (491)
T 4aps_A 384 VSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVV 463 (491)
T ss_dssp CCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 234666677888899999988999999999999 6699999999999999999999998877765555555555554444
Q ss_pred HHHHHHhh
Q 045446 185 ICLTAVLF 192 (263)
Q Consensus 185 ~~~~~~~~ 192 (263)
..+.....
T Consensus 464 ~~~~~~~~ 471 (491)
T 4aps_A 464 LGIVLVFL 471 (491)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 44444333
No 10
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.29 E-value=1e-10 Score=104.40 Aligned_cols=165 Identities=13% Similarity=0.041 Sum_probs=109.0
Q ss_pred cccchhchHHHHHHcCCCHHHHHHHHHHHHHhhhh-hhHHHhhhcccChHHHHHHHHHHHHHHHHHHHHHHhccCCCchH
Q 045446 30 NYTFSNYSDALKSLMALTQLQLNNLSVAKDVGKAF-GLLSGLASDRLPTSAILIIGSLEGLIGYGVQWLVVSEKIHPLPY 108 (263)
Q Consensus 30 ~~~~~~~~p~l~~~~~~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 108 (263)
.+....|.|.+.++.+.+..+.........+.... .++++++.||+|||+.++.+.....++.+.+........+ .
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~--~- 369 (491)
T 4gc0_A 293 INVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP--G- 369 (491)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCC--H-
T ss_pred hhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccc--h-
Confidence 34455677888888899888877766666666666 8899999999999999999988888777655444333222 2
Q ss_pred HHHHHH--HHHHhhchhhhhhhHHHHHhhhcC-CCCCchHHHHHhhhhhHHHHHHHHHHHhhCC-------ChhHHHHHH
Q 045446 109 WQMCIF--LCMGGNSTTWMNTAVLVTCMRNFP-KNRGPVSGILKGYVGLSTAIFTDICTALFSS-------KPSAFLLIL 178 (263)
Q Consensus 109 ~~l~~~--~~l~g~g~~~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~-------~~~~~~~~~ 178 (263)
+...+. ....+.+.+ ..+....+..|.|| +.|++++|+......+++.+.+.+...+.+. +....+++.
T Consensus 370 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~ 448 (491)
T 4gc0_A 370 IVALLSMLFYVAAFAMS-WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIY 448 (491)
T ss_dssp HHHHHHHHHHHHHHHTT-TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhH-HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 222222 222222222 23556788999999 6699999999999889998888776655432 122233444
Q ss_pred HHHHHHHHHHHHhhcccCCC
Q 045446 179 AIVPAVICLTAVLFLHENQP 198 (263)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~ 198 (263)
++...+..+...++++|.+.
T Consensus 449 ~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 449 GCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHHHHHheecCCCC
Confidence 54444444455556666543
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.26 E-value=3e-11 Score=106.17 Aligned_cols=133 Identities=8% Similarity=0.001 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHhhhh-hhHHHhhhcccChHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhhchhhhhhh
Q 045446 50 QLNNLSVAKDVGKAF-GLLSGLASDRLPTSAILIIGSLEGLIGYGVQWLVVSEKIHPLPYWQMCIFLCMGGNSTTWMNTA 128 (263)
Q Consensus 50 ~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~ 128 (263)
+.++......++..+ .++.|++.||+|||+++..+.+..+++.. ..+..+ +.+.+++...+.+++.+...+.
T Consensus 260 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 332 (417)
T 2cfq_A 260 VFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRII-----GSSFAT--SALEVVILKTLHMFEVPFLLVG 332 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-----HHTTCC--SHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH-----HHHHhc--cHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555 78999999999999999888877776655 334433 3355666666677766666667
Q ss_pred HHHHHhhhcC-CCCCchHHHH-HhhhhhHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHH
Q 045446 129 VLVTCMRNFP-KNRGPVSGIL-KGYVGLSTAIFTDICTALFSSKPSAFLLILAIVPAVICLTA 189 (263)
Q Consensus 129 ~~~~~~~~fp-~~rg~~~gi~-~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 189 (263)
......|.+| +.||++.|.. +...++|+.++|.+.+.+.+.......+.......+++.+.
T Consensus 333 ~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~ 395 (417)
T 2cfq_A 333 CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLI 395 (417)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 7889999999 6699999994 77888999999999998876533333333333333334333
No 12
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.25 E-value=4.3e-11 Score=105.05 Aligned_cols=130 Identities=10% Similarity=-0.032 Sum_probs=100.1
Q ss_pred ccchhchHHH-HHH-cCCCHHHHHHHHHHHHHhhhh-hhHHHhhhcccChHHHHHHHHHHHHHHHHHHHHHHhccCCCch
Q 045446 31 YTFSNYSDAL-KSL-MALTQLQLNNLSVAKDVGKAF-GLLSGLASDRLPTSAILIIGSLEGLIGYGVQWLVVSEKIHPLP 107 (263)
Q Consensus 31 ~~~~~~~p~l-~~~-~~~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 107 (263)
+....+.|.+ .++ +|.++.+.+++.....++..+ .++.|++.||+|||+++..+.+...++.+.. ...+ +
T Consensus 275 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~-----~~~~--~ 347 (438)
T 3o7q_A 275 TACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLIS-----AFAG--G 347 (438)
T ss_dssp HHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH-----HHCC--H
T ss_pred HHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH-----HHcC--C
Confidence 3444555665 544 699999999988887787777 8999999999999999999988877776633 2222 2
Q ss_pred HHHHHHHHHHHhhchhhhhhhHHHHHhhhcCCCCCchHHHHHhhhhhHHHHHHHHHHHhhCC
Q 045446 108 YWQMCIFLCMGGNSTTWMNTAVLVTCMRNFPKNRGPVSGILKGYVGLSTAIFTDICTALFSS 169 (263)
Q Consensus 108 ~~~l~~~~~l~g~g~~~~~~~~~~~~~~~fp~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~ 169 (263)
.+. .....+.|++.+..++.......|.+|++|+++.++.. ...+|+.++|.+.+.+.+.
T Consensus 348 ~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~g~l~~~ 407 (438)
T 3o7q_A 348 HVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVSDA 407 (438)
T ss_dssp HHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHH-HTTHHHHHHHHHHHHHHHH
T ss_pred cHH-HHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHH-HHHHHHHHHHHHHHHHHHH
Confidence 233 33346778888888888889989999967888888887 5559999999999988775
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.88 E-value=2.2e-08 Score=90.03 Aligned_cols=114 Identities=9% Similarity=-0.000 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhhhh-hhHHHhhh----cccCh----HHHHHHHHHHHHHHHHHHHHHHhccCC-------CchHHHHHHH
Q 045446 51 LNNLSVAKDVGKAF-GLLSGLAS----DRLPT----SAILIIGSLEGLIGYGVQWLVVSEKIH-------PLPYWQMCIF 114 (263)
Q Consensus 51 ~~~i~~~~~~~~~~-~~~~G~l~----Dr~G~----r~~~~~g~~~~~~g~~~~~~~~~~~~~-------~~~~~~l~~~ 114 (263)
.+++.....++..+ .++.+++. ||.|+ ++.+..|.++.+++.. ..+..+ ..+.+.+.+.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 411 (524)
T 2xut_A 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWI-----VVGTIQLMMDGGSALSIFWQILP 411 (524)
T ss_dssp HHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHH-----TTTTTTTTTTTTCCCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHH-----HHHHHHHHhcCCCCcCHHHHHHH
Confidence 34444444444444 56666654 55543 3566667776666665 322211 1234666677
Q ss_pred HHHHhhchhhhhhhHHHHHhhhcC-CCCCchHHHHHhhhhhHHHHHHHHHHHhhCC
Q 045446 115 LCMGGNSTTWMNTAVLVTCMRNFP-KNRGPVSGILKGYVGLSTAIFTDICTALFSS 169 (263)
Q Consensus 115 ~~l~g~g~~~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~ 169 (263)
.++.|++.+...+.......|..| ++||+++|+.+...++|+.+++.+.+.+.+.
T Consensus 412 ~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~ 467 (524)
T 2xut_A 412 YALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSP 467 (524)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 888999999999999999999999 6799999999999999999999999988763
No 14
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.75 E-value=1.6e-10 Score=99.57 Aligned_cols=132 Identities=14% Similarity=0.172 Sum_probs=93.2
Q ss_pred chhchHHH-HHHcCCCHHHHHHHHHHHHHhhhh-hhHHHhhhcccChHHHHHHHHHH-HHHHHHHHHHHHhccCCCchHH
Q 045446 33 FSNYSDAL-KSLMALTQLQLNNLSVAKDVGKAF-GLLSGLASDRLPTSAILIIGSLE-GLIGYGVQWLVVSEKIHPLPYW 109 (263)
Q Consensus 33 ~~~~~p~l-~~~~~~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~-~~~g~~~~~~~~~~~~~~~~~~ 109 (263)
+..+.|.+ ++++|.|+.+.+++.....++..+ .++.|++.||+|+|.. .+... ...+.......... +.+.+
T Consensus 218 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~ 292 (375)
T 2gfp_A 218 FEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW--QSVICCLLAGLLMWIPDWFG---VMNVW 292 (375)
T ss_dssp HHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHH--HHHHHHHHTSSSSSHHHHHH---HHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhc---cccHH
Confidence 33444544 555888999999988888888877 8899999999988322 22222 22222111111100 11345
Q ss_pred HHHHHHHHHhhchhhhhhhHHHHHhhhcCCCCCchHHHHHhhhhhHHHHHHHHHHHhhCC
Q 045446 110 QMCIFLCMGGNSTTWMNTAVLVTCMRNFPKNRGPVSGILKGYVGLSTAIFTDICTALFSS 169 (263)
Q Consensus 110 ~l~~~~~l~g~g~~~~~~~~~~~~~~~fp~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~ 169 (263)
.+.+..++.|++.+...+.......|.+|++||++.|+.+....+|..+++.+.+.+.+.
T Consensus 293 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 352 (375)
T 2gfp_A 293 TLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQT 352 (375)
T ss_dssp HHHHHHHHHHHHHHHTSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 566677888999999999999999999997799999999999999999988888877654
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=60.39 E-value=3.5 Score=19.50 Aligned_cols=14 Identities=29% Similarity=0.302 Sum_probs=11.7
Q ss_pred HHHhhhcccChHHH
Q 045446 67 LSGLASDRLPTSAI 80 (263)
Q Consensus 67 ~~G~l~Dr~G~r~~ 80 (263)
+.|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46899999999865
Done!