BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045447
(2058 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 34.7 bits (78), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 468 DAYSAINQKL---QNFISE---KSSLEKTIQELKADLRMRERDYYLAQKEISDLQKQVTV 521
DA+S +L +NFI + K+ + + +L D +R + +A + S + +VT
Sbjct: 366 DAFSLFLDRLSETENFIKDAGFKAQISSWLAQLAEDEALRANTFAMATEATSSCEDRVTF 425
Query: 522 LLKECRDIQLRCGLSRIEFDDDAVAI 547
L + +++QL + ++D+D A+
Sbjct: 426 FLHQMKNVQLVHNAEKGQYDNDLAAL 451
>pdb|3F4B|A Chain A, Crystal Structure Of Plasmodium Berghei Enoyl-Acyl-Carrier-
Protein Reductase With Triclosan
pdb|3F4B|B Chain B, Crystal Structure Of Plasmodium Berghei Enoyl-Acyl-Carrier-
Protein Reductase With Triclosan
pdb|3F4B|C Chain C, Crystal Structure Of Plasmodium Berghei Enoyl-Acyl-Carrier-
Protein Reductase With Triclosan
pdb|3F4B|D Chain D, Crystal Structure Of Plasmodium Berghei Enoyl-Acyl-Carrier-
Protein Reductase With Triclosan
Length = 323
Score = 33.1 bits (74), Expect = 1.6, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 1350 EDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLS 1409
++YD + + + + + KN IEE NL+ K IS L LAN R E +K L
Sbjct: 84 DNYDDIDEDTKNNKRYNNLKNYSIEEVANLIYNKYGKISMLVHSLANGR----EVQKSLL 139
Query: 1410 DISQ 1413
D S+
Sbjct: 140 DTSR 143
>pdb|2ZUE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg) And An Atp Analog
(Anp)
pdb|2ZUF|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg)
Length = 629
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 27/132 (20%)
Query: 651 HKLHSSHTQYIEAAPDGRKDLLLLL---EGSQEATKRAQEKMAERVRCLEDD-------- 699
+ L H + E GRK + E QEA KRA+E + E+ L D+
Sbjct: 411 YHLAYEHVERPEGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNPALSDEEKAEVAEK 470
Query: 700 --LGKARSEIIALRSER-------DKLALEAE------FAREKLDSVMREAEHQKVEVNG 744
+G R +I ++ D L E E +A + S++R+AE + ++V+
Sbjct: 471 VGIGAIRYNLIKYSPDKKIIFRWEDVLNFEGESAPYIQYAHARCSSILRKAEEEGIKVDP 530
Query: 745 -VLARNVEFSQL 755
L +N +F++L
Sbjct: 531 ETLFKNADFTKL 542
>pdb|3R6Y|A Chain A, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|B Chain B, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|C Chain C, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|D Chain D, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|E Chain E, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|F Chain F, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|G Chain G, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|H Chain H, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
Length = 401
Score = 32.0 bits (71), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 278 LSTVNKLVELYKESSEEWSRKAGELEGVIKALETQL 313
LS +N+L+E K +E+ +KA E GVIK T L
Sbjct: 154 LSLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHL 189
>pdb|1J3U|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|1J3U|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|3R6Q|A Chain A, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|B Chain B, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|C Chain C, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|D Chain D, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|E Chain E, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|F Chain F, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|G Chain G, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|H Chain H, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6V|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|C Chain C, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|D Chain D, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|E Chain E, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|F Chain F, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|G Chain G, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|H Chain H, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
Length = 468
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 278 LSTVNKLVELYKESSEEWSRKAGELEGVIKALETQL 313
LS +N+L+E K +E+ +KA E GVIK T L
Sbjct: 154 LSLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHL 189
>pdb|2CH7|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of A Bacterial
Chemoreceptor From Thermotoga Maritima
Length = 309
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 674 LLEGSQEATKRAQEKMAERVRCLEDDLGKARSEIIALRSERDKLALEAEFAREKLDSVM 732
L E SQ+A++ + ++ +R + +D GK SEI A E KLA EA+ EKL+S++
Sbjct: 171 LAEESQQASENVR-RVVNEIRSIAEDAGKVSSEITARVEEGTKLADEAD---EKLNSIV 225
>pdb|2CH7|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of A Bacterial
Chemoreceptor From Thermotoga Maritima
Length = 309
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 674 LLEGSQEATKRAQEKMAERVRCLEDDLGKARSEIIALRSERDKLALEAEFAREKLDSVM 732
L E SQ+A++ + ++ +R + +D GK SEI A E KLA EA+ EKL+S++
Sbjct: 171 LAEESQQASENVR-RVVNEIRSIAEDAGKVSSEITARVEEGTKLADEAD---EKLNSIV 225
>pdb|1HA0|A Chain A, Hemagglutinin Precursor Ha0
Length = 494
Score = 31.2 bits (69), Expect = 6.3, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 17/106 (16%)
Query: 34 DFETVKARADAAAITAEQTCSLLEQKFISLQEEFSKVESQNAQLQKSLDD-RVN------ 86
D ++ +A D + +KF +++EFS+VE + L+K ++D +++
Sbjct: 358 DLKSTQAAIDQINGKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNA 417
Query: 87 ELAEVQSQKHQLHLQLIGKDGEIERLTMEVAELHKSRRQLMELVEQ 132
EL +H + L D E+ +L K+RRQL E E+
Sbjct: 418 ELLVALENQHTIDL----TDSEMNKL------FEKTRRQLRENAEE 453
>pdb|3IYU|X Chain X, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|Y Chain Y, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|Z Chain Z, Atomic Model Of An Infectious Rotavirus Particle
Length = 776
Score = 31.2 bits (69), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 10/103 (9%)
Query: 271 EERFSTELSTVNKLVEL---YKESSEEWSRKAGELEGVIKALETQLAQVQNDCKEKLEKE 327
E FS + V++L L + +E+ AG + L +D + +
Sbjct: 434 EPSFSITRTRVSRLYGLPAANPNNGKEYYEVAGRFSLI------SLVPSNDDYQTPITNS 487
Query: 328 VSAREQLEKEAMDLKEKLEKCEAEIESSRKTNELNLLPLSSFS 370
V+ R+ LE++ +L+E+ EI S+ +L LLPL FS
Sbjct: 488 VTVRQDLERQLGELREEFNALSQEIAMSQLI-DLALLPLDMFS 529
>pdb|1CII|A Chain A, Colicin Ia
Length = 602
Score = 30.8 bits (68), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 10/129 (7%)
Query: 1342 QRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLE- 1400
++ N +V ++D+L+ + K++ + + RN LS + + EQ+ AN L
Sbjct: 341 KKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSARTN-----EQKHANDALNA 395
Query: 1401 -LSEKE---KRLSDISQAEAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQ 1456
L EKE +LS I+Q A K + ++ K + E L E+ + + LAR+
Sbjct: 396 LLKEKENIRNQLSGINQKIAEEKRKQDELKATKDAINFTTEFLKSVSEKYGAKAEQLARE 455
Query: 1457 LDDLKQGKK 1465
+ +GKK
Sbjct: 456 MAGQAKGKK 464
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.306 0.123 0.317
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,044,947
Number of Sequences: 62578
Number of extensions: 1660328
Number of successful extensions: 6352
Number of sequences better than 100.0: 130
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 109
Number of HSP's that attempted gapping in prelim test: 5930
Number of HSP's gapped (non-prelim): 493
length of query: 2058
length of database: 14,973,337
effective HSP length: 114
effective length of query: 1944
effective length of database: 7,839,445
effective search space: 15239881080
effective search space used: 15239881080
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (27.3 bits)