Query 045447
Match_columns 2058
No_of_seqs 158 out of 177
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 13:19:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045447.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045447hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4674 Uncharacterized conser 100.0 2E-167 4E-172 1639.9 199.4 1773 1-1887 1-1820(1822)
2 KOG4674 Uncharacterized conser 100.0 1.3E-21 2.8E-26 262.5 176.9 1382 56-1567 50-1521(1822)
3 KOG0161 Myosin class II heavy 99.9 1.1E-11 2.3E-16 171.7 149.1 153 1131-1325 1610-1762(1930)
4 KOG0161 Myosin class II heavy 99.9 1.2E-11 2.5E-16 171.3 149.7 184 292-527 1085-1276(1930)
5 PF07926 TPR_MLP1_2: TPR/MLP1/ 99.9 2E-22 4.4E-27 213.6 19.5 130 1037-1166 3-132 (132)
6 TIGR00606 rad50 rad50. This fa 99.7 1.8E-07 3.8E-12 132.2 121.4 155 939-1103 971-1128(1311)
7 TIGR00606 rad50 rad50. This fa 99.7 3E-07 6.4E-12 129.9 120.7 83 419-508 182-264 (1311)
8 TIGR02169 SMC_prok_A chromosom 99.5 3E-06 6.5E-11 118.5 99.6 14 1192-1205 558-571 (1164)
9 TIGR02168 SMC_prok_B chromosom 99.5 9.9E-06 2.1E-10 113.2 104.6 33 1136-1168 674-706 (1179)
10 PF10174 Cast: RIM-binding pro 99.5 4.3E-06 9.4E-11 110.6 80.3 251 989-1250 229-505 (775)
11 COG1196 Smc Chromosome segrega 99.4 2.8E-05 6.1E-10 109.2 94.9 58 1522-1596 969-1026(1163)
12 PRK03918 chromosome segregatio 99.4 1.6E-05 3.5E-10 108.7 80.8 243 1190-1461 446-693 (880)
13 TIGR02168 SMC_prok_B chromosom 99.4 3.4E-05 7.4E-10 107.9 105.1 22 1582-1603 1031-1052(1179)
14 PRK02224 chromosome segregatio 99.4 1.8E-05 3.9E-10 108.4 79.2 70 1301-1373 600-669 (880)
15 TIGR02169 SMC_prok_A chromosom 99.3 4.5E-05 9.8E-10 107.0 102.9 11 1521-1531 1005-1015(1164)
16 PRK02224 chromosome segregatio 99.3 9.3E-06 2E-10 111.1 73.4 102 1349-1451 536-637 (880)
17 PF10174 Cast: RIM-binding pro 99.3 4.3E-05 9.3E-10 101.4 85.7 370 440-866 24-423 (775)
18 COG1196 Smc Chromosome segrega 99.1 0.00056 1.2E-08 96.5 97.4 86 433-518 411-496 (1163)
19 PF01576 Myosin_tail_1: Myosin 99.1 2.4E-11 5.2E-16 163.0 1.6 114 412-528 328-444 (859)
20 PRK03918 chromosome segregatio 99.1 0.00058 1.3E-08 93.8 76.3 42 1193-1234 388-429 (880)
21 PF12128 DUF3584: Protein of u 99.1 0.00087 1.9E-08 94.8 78.0 260 1193-1462 494-792 (1201)
22 PF12128 DUF3584: Protein of u 99.0 0.001 2.3E-08 94.1 92.9 139 1305-1461 730-875 (1201)
23 KOG4643 Uncharacterized coiled 98.9 0.0013 2.9E-08 86.5 57.3 399 1051-1504 177-601 (1195)
24 PF01576 Myosin_tail_1: Myosin 98.8 6.5E-10 1.4E-14 149.5 0.0 117 1426-1556 699-818 (859)
25 PRK04863 mukB cell division pr 98.6 0.026 5.7E-07 80.8 92.1 186 1264-1459 850-1045(1486)
26 PF07888 CALCOCO1: Calcium bin 98.5 0.0018 3.9E-08 82.8 42.3 61 1494-1556 395-457 (546)
27 PF05701 WEMBL: Weak chloropla 98.5 0.02 4.4E-07 74.7 63.0 55 1264-1318 301-355 (522)
28 PRK01156 chromosome segregatio 98.4 0.047 1E-06 75.8 70.5 18 1675-1692 825-842 (895)
29 KOG0996 Structural maintenance 98.3 0.048 1E-06 73.9 87.7 109 1307-1416 858-966 (1293)
30 PF13514 AAA_27: AAA domain 98.3 0.074 1.6E-06 75.5 89.5 257 1301-1572 674-938 (1111)
31 PF07888 CALCOCO1: Calcium bin 98.3 0.0094 2E-07 76.5 43.1 178 1148-1350 278-467 (546)
32 PRK01156 chromosome segregatio 98.3 0.078 1.7E-06 73.6 74.1 37 1191-1227 464-500 (895)
33 KOG4643 Uncharacterized coiled 98.2 0.081 1.8E-06 70.7 52.1 132 55-193 202-338 (1195)
34 PF05701 WEMBL: Weak chloropla 98.1 0.12 2.7E-06 67.6 66.5 157 1290-1461 285-441 (522)
35 KOG0977 Nuclear envelope prote 98.0 0.039 8.5E-07 71.1 40.7 90 769-862 135-224 (546)
36 PF15070 GOLGA2L5: Putative go 98.0 0.15 3.2E-06 67.7 50.3 239 1109-1364 6-258 (617)
37 PF00038 Filament: Intermediat 98.0 0.027 5.9E-07 68.6 38.0 136 51-192 4-139 (312)
38 PF15070 GOLGA2L5: Putative go 97.9 0.25 5.3E-06 65.7 53.1 107 880-990 28-139 (617)
39 PF00038 Filament: Intermediat 97.8 0.19 4.2E-06 61.4 42.2 35 693-727 6-40 (312)
40 KOG0971 Microtubule-associated 97.8 0.2 4.3E-06 66.3 39.7 58 1070-1127 291-352 (1243)
41 KOG0962 DNA repair protein RAD 97.7 0.63 1.4E-05 65.1 110.7 93 1061-1171 988-1080(1294)
42 KOG4593 Mitotic checkpoint pro 97.7 0.46 1E-05 62.3 63.7 174 1352-1536 421-606 (716)
43 KOG0995 Centromere-associated 97.6 0.34 7.4E-06 62.4 38.5 108 1289-1401 276-387 (581)
44 PF05557 MAD: Mitotic checkpoi 97.6 8E-05 1.7E-09 100.1 6.6 297 1258-1594 250-573 (722)
45 PF05557 MAD: Mitotic checkpoi 97.6 0.00029 6.4E-09 94.8 11.9 27 1440-1466 565-591 (722)
46 PF09728 Taxilin: Myosin-like 97.5 0.15 3.4E-06 62.5 33.3 123 1211-1346 30-153 (309)
47 PF05622 HOOK: HOOK protein; 97.5 2.3E-05 4.9E-10 105.1 0.0 225 1136-1361 183-423 (713)
48 KOG0977 Nuclear envelope prote 97.5 0.27 5.9E-06 63.7 35.2 290 1136-1454 46-355 (546)
49 KOG0612 Rho-associated, coiled 97.4 0.54 1.2E-05 64.7 38.5 150 1301-1465 624-773 (1317)
50 KOG0250 DNA repair protein RAD 97.4 0.14 3E-06 69.8 33.2 194 1257-1464 273-466 (1074)
51 PF05622 HOOK: HOOK protein; 97.2 7E-05 1.5E-09 100.5 0.0 72 1093-1169 284-355 (713)
52 PF09730 BicD: Microtubule-ass 97.2 1.7 3.8E-05 58.5 66.6 104 700-810 599-710 (717)
53 PHA02562 46 endonuclease subun 97.2 0.083 1.8E-06 69.4 28.1 89 1285-1374 233-323 (562)
54 KOG0994 Extracellular matrix g 97.2 1.9 4.1E-05 58.9 54.4 46 1380-1425 1586-1631(1758)
55 PF00261 Tropomyosin: Tropomyo 97.2 0.25 5.5E-06 58.5 28.6 37 226-262 116-152 (237)
56 KOG0976 Rho/Rac1-interacting s 97.2 1.7 3.7E-05 57.3 64.1 201 941-1153 88-298 (1265)
57 KOG4673 Transcription factor T 97.2 1.6 3.4E-05 56.9 72.0 49 1321-1370 904-952 (961)
58 KOG0933 Structural maintenance 97.2 2.2 4.7E-05 58.1 63.3 151 1306-1461 683-842 (1174)
59 PF14662 CCDC155: Coiled-coil 97.1 0.088 1.9E-06 59.7 22.4 136 1258-1422 4-139 (193)
60 PHA02562 46 endonuclease subun 97.0 0.16 3.5E-06 66.8 27.7 29 1253-1281 148-176 (562)
61 PF00261 Tropomyosin: Tropomyo 97.0 0.54 1.2E-05 55.8 29.0 108 127-237 80-190 (237)
62 KOG0976 Rho/Rac1-interacting s 97.0 2.6 5.7E-05 55.7 58.3 163 1079-1282 88-259 (1265)
63 COG0419 SbcC ATPase involved i 96.9 4.2 9.2E-05 57.1 77.0 15 905-919 181-195 (908)
64 COG1340 Uncharacterized archae 96.9 0.94 2E-05 54.9 29.4 23 1347-1369 128-150 (294)
65 PF06160 EzrA: Septation ring 96.8 3.5 7.5E-05 54.9 49.3 196 263-505 283-488 (560)
66 KOG0978 E3 ubiquitin ligase in 96.7 4.2 9.1E-05 54.6 71.2 140 1302-1449 463-602 (698)
67 KOG0964 Structural maintenance 96.7 5 0.00011 54.7 67.4 112 1131-1243 389-500 (1200)
68 KOG0999 Microtubule-associated 96.6 3.7 8.1E-05 52.6 47.4 121 1100-1246 114-244 (772)
69 PRK04863 mukB cell division pr 96.6 8.5 0.00018 56.4 107.2 136 47-197 296-431 (1486)
70 KOG0980 Actin-binding protein 96.6 5.6 0.00012 53.8 36.6 57 1543-1606 595-651 (980)
71 KOG0996 Structural maintenance 96.5 6.9 0.00015 54.5 85.7 155 1291-1458 804-966 (1293)
72 PRK11637 AmiB activator; Provi 96.5 0.69 1.5E-05 59.3 27.0 10 1083-1092 142-151 (428)
73 COG0419 SbcC ATPase involved i 96.5 7.7 0.00017 54.7 82.4 53 1060-1112 391-443 (908)
74 PF09730 BicD: Microtubule-ass 96.4 6.5 0.00014 53.3 63.2 83 1372-1464 591-691 (717)
75 PF12718 Tropomyosin_1: Tropom 96.4 0.22 4.8E-06 54.8 18.2 136 1198-1346 2-140 (143)
76 PRK11637 AmiB activator; Provi 96.2 2.2 4.7E-05 54.9 29.2 20 1221-1240 44-63 (428)
77 PF15619 Lebercilin: Ciliary p 96.1 2.6 5.7E-05 48.8 25.8 69 845-920 121-189 (194)
78 KOG4673 Transcription factor T 96.0 8.7 0.00019 50.6 63.3 51 1106-1156 579-629 (961)
79 PF15619 Lebercilin: Ciliary p 96.0 1 2.3E-05 52.0 22.1 153 1301-1457 13-187 (194)
80 COG5185 HEC1 Protein involved 95.9 7.5 0.00016 49.3 35.2 72 1299-1375 322-393 (622)
81 KOG1029 Endocytic adaptor prot 95.9 5.8 0.00013 52.7 29.9 101 1301-1402 459-559 (1118)
82 KOG0946 ER-Golgi vesicle-tethe 95.9 5.4 0.00012 53.5 29.7 36 1131-1166 684-719 (970)
83 PF13514 AAA_27: AAA domain 95.9 16 0.00035 52.6 95.3 165 1192-1369 784-952 (1111)
84 KOG0612 Rho-associated, coiled 95.8 15 0.00033 51.5 66.4 65 1213-1282 752-821 (1317)
85 PF06160 EzrA: Septation ring 95.8 12 0.00025 50.1 45.4 150 1337-1500 213-367 (560)
86 PF09726 Macoilin: Transmembra 95.7 9.2 0.0002 52.2 32.5 37 878-914 542-578 (697)
87 KOG0963 Transcription factor/C 95.6 12 0.00027 49.3 41.7 137 1021-1173 219-357 (629)
88 COG1579 Zn-ribbon protein, pos 95.6 1.5 3.2E-05 52.2 21.3 113 1279-1391 17-130 (239)
89 KOG0995 Centromere-associated 95.5 13 0.00028 48.8 44.2 77 938-1014 432-508 (581)
90 KOG1029 Endocytic adaptor prot 95.5 14 0.00031 49.3 36.8 47 1042-1091 554-602 (1118)
91 PF05667 DUF812: Protein of un 95.5 15 0.00032 49.4 35.6 124 90-213 346-476 (594)
92 KOG0994 Extracellular matrix g 95.4 18 0.0004 50.2 58.8 29 568-596 1265-1293(1758)
93 PF07111 HCR: Alpha helical co 95.4 15 0.00033 49.1 69.2 429 906-1363 166-652 (739)
94 KOG0946 ER-Golgi vesicle-tethe 95.4 8 0.00017 52.0 28.8 107 20-137 658-767 (970)
95 PF15066 CAGE1: Cancer-associa 95.3 5.3 0.00011 50.7 25.7 184 137-350 319-506 (527)
96 PRK11281 hypothetical protein; 95.3 11 0.00023 53.9 31.9 152 1308-1462 81-248 (1113)
97 KOG4593 Mitotic checkpoint pro 95.1 18 0.00039 48.4 62.9 223 724-966 334-587 (716)
98 COG4942 Membrane-bound metallo 95.0 11 0.00023 48.3 27.5 15 1447-1461 111-125 (420)
99 PF08317 Spc7: Spc7 kinetochor 95.0 0.96 2.1E-05 56.1 18.6 86 1316-1405 179-264 (325)
100 PF09726 Macoilin: Transmembra 94.9 19 0.0004 49.4 31.3 16 334-349 641-656 (697)
101 KOG0933 Structural maintenance 94.9 25 0.00054 48.7 83.7 127 1202-1349 814-941 (1174)
102 COG1579 Zn-ribbon protein, pos 94.9 1.6 3.5E-05 51.8 18.9 101 1349-1461 30-130 (239)
103 PF06005 DUF904: Protein of un 94.8 0.2 4.3E-06 49.1 9.6 64 1284-1347 9-72 (72)
104 PRK10246 exonuclease subunit S 94.6 34 0.00074 49.2 81.8 73 1299-1371 716-798 (1047)
105 PF10473 CENP-F_leu_zip: Leuci 94.2 4.4 9.6E-05 44.7 19.2 98 66-163 11-108 (140)
106 PRK09039 hypothetical protein; 94.2 1.2 2.7E-05 55.6 17.1 21 1319-1339 44-64 (343)
107 KOG0999 Microtubule-associated 94.2 25 0.00053 45.7 68.6 357 873-1280 7-375 (772)
108 KOG0964 Structural maintenance 93.9 38 0.00082 46.9 78.0 288 1266-1581 714-1055(1200)
109 PF12718 Tropomyosin_1: Tropom 93.9 2.9 6.2E-05 46.3 17.3 60 1383-1442 78-137 (143)
110 PF05667 DUF812: Protein of un 93.9 15 0.00033 49.2 27.0 23 1484-1506 491-513 (594)
111 PRK09039 hypothetical protein; 93.9 2 4.3E-05 53.8 18.0 15 1484-1498 172-186 (343)
112 PF04849 HAP1_N: HAP1 N-termin 93.9 18 0.00039 44.7 25.1 45 183-231 205-249 (306)
113 PRK11281 hypothetical protein; 93.8 49 0.0011 47.7 43.0 143 62-213 70-230 (1113)
114 COG4372 Uncharacterized protei 93.8 23 0.0005 44.4 25.5 74 1388-1461 112-185 (499)
115 PRK04778 septation ring format 93.6 37 0.0008 45.6 58.5 199 836-1082 23-229 (569)
116 TIGR03007 pepcterm_ChnLen poly 93.5 6.5 0.00014 51.4 22.6 58 1320-1377 167-224 (498)
117 PF10473 CENP-F_leu_zip: Leuci 93.5 4 8.8E-05 45.0 17.2 109 1385-1497 24-132 (140)
118 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.5 2.2 4.8E-05 46.3 15.3 45 1301-1345 4-48 (132)
119 smart00787 Spc7 Spc7 kinetocho 93.5 4 8.8E-05 50.5 19.3 84 1320-1407 178-261 (312)
120 KOG0979 Structural maintenance 93.3 19 0.00042 49.8 26.1 108 1351-1458 249-356 (1072)
121 PF13870 DUF4201: Domain of un 93.3 15 0.00033 41.8 22.4 133 1344-1497 36-172 (177)
122 TIGR03185 DNA_S_dndD DNA sulfu 93.2 45 0.00097 45.5 38.6 53 1099-1151 229-281 (650)
123 PF05010 TACC: Transforming ac 93.2 21 0.00045 42.0 23.3 107 1301-1411 17-123 (207)
124 KOG2129 Uncharacterized conser 93.1 32 0.0007 43.4 30.1 132 1405-1567 182-319 (552)
125 KOG4809 Rab6 GTPase-interactin 92.8 27 0.00058 45.5 24.8 124 1419-1557 330-458 (654)
126 PF03999 MAP65_ASE1: Microtubu 92.8 0.6 1.3E-05 62.6 11.8 151 1341-1507 255-407 (619)
127 PF09728 Taxilin: Myosin-like 92.8 33 0.00071 42.7 39.8 97 252-352 203-302 (309)
128 PF15397 DUF4618: Domain of un 92.8 18 0.00038 43.8 22.4 73 972-1044 62-134 (258)
129 COG4942 Membrane-bound metallo 92.7 34 0.00074 44.0 25.8 16 1225-1240 39-54 (420)
130 PRK04778 septation ring format 92.7 49 0.0011 44.5 57.4 140 1311-1457 314-464 (569)
131 PF14662 CCDC155: Coiled-coil 92.7 24 0.00051 40.9 26.4 78 180-261 63-140 (193)
132 PRK10929 putative mechanosensi 92.4 74 0.0016 45.9 43.6 153 65-237 58-229 (1109)
133 PLN03188 kinesin-12 family pro 92.3 74 0.0016 45.8 32.2 114 1103-1228 1068-1191(1320)
134 TIGR03185 DNA_S_dndD DNA sulfu 92.3 58 0.0012 44.5 38.0 27 1384-1410 390-416 (650)
135 PF06818 Fez1: Fez1; InterPro 92.3 3.3 7.2E-05 48.0 15.1 141 1359-1507 12-154 (202)
136 PF09755 DUF2046: Uncharacteri 92.2 37 0.0008 42.0 31.7 24 1439-1462 183-206 (310)
137 TIGR01843 type_I_hlyD type I s 92.1 23 0.0005 44.8 24.2 61 1102-1165 212-272 (423)
138 PF09787 Golgin_A5: Golgin sub 92.0 55 0.0012 43.5 34.3 118 1276-1411 278-397 (511)
139 PF10186 Atg14: UV radiation r 92.0 7.4 0.00016 47.0 18.8 87 1316-1402 22-108 (302)
140 KOG0963 Transcription factor/C 92.0 56 0.0012 43.6 49.7 74 945-1021 15-96 (629)
141 PRK10246 exonuclease subunit S 91.9 83 0.0018 45.4 75.4 17 1675-1691 975-991 (1047)
142 PF06818 Fez1: Fez1; InterPro 91.8 20 0.00044 41.8 20.6 65 1098-1162 136-200 (202)
143 TIGR03007 pepcterm_ChnLen poly 91.2 34 0.00074 44.9 24.9 30 894-923 210-239 (498)
144 PF09789 DUF2353: Uncharacteri 91.1 10 0.00022 47.0 18.5 145 1315-1461 17-174 (319)
145 PRK15422 septal ring assembly 91.0 1.6 3.4E-05 43.3 9.3 37 1311-1347 43-79 (79)
146 KOG0978 E3 ubiquitin ligase in 90.7 81 0.0018 43.1 64.8 179 1355-1559 438-616 (698)
147 PF07111 HCR: Alpha helical co 90.5 81 0.0018 42.7 77.0 225 1128-1374 238-495 (739)
148 PF09787 Golgin_A5: Golgin sub 90.4 75 0.0016 42.2 31.5 94 137-233 276-376 (511)
149 PF13870 DUF4201: Domain of un 90.3 38 0.00082 38.6 22.0 156 1264-1441 5-173 (177)
150 PF04012 PspA_IM30: PspA/IM30 89.9 26 0.00057 41.1 20.1 127 1331-1461 8-146 (221)
151 PF14197 Cep57_CLD_2: Centroso 89.8 2.3 5E-05 41.5 9.3 66 1151-1238 3-68 (69)
152 PF10168 Nup88: Nuclear pore c 89.8 12 0.00025 51.4 19.2 110 1264-1374 535-656 (717)
153 PF14915 CCDC144C: CCDC144C pr 89.6 60 0.0013 40.0 39.9 62 287-351 232-300 (305)
154 PF09789 DUF2353: Uncharacteri 89.4 68 0.0015 40.2 29.9 36 180-215 129-164 (319)
155 PF13851 GAS: Growth-arrest sp 89.1 44 0.00095 39.2 20.8 103 26-132 27-132 (201)
156 TIGR01005 eps_transp_fam exopo 89.0 35 0.00075 47.3 23.3 21 1386-1406 289-309 (754)
157 COG3074 Uncharacterized protei 88.9 3.8 8.2E-05 39.6 9.6 43 1305-1347 37-79 (79)
158 PF05483 SCP-1: Synaptonemal c 88.7 1E+02 0.0023 41.5 85.4 157 1381-1559 611-775 (786)
159 PF15066 CAGE1: Cancer-associa 88.2 94 0.002 40.3 26.3 24 696-719 402-425 (527)
160 TIGR01843 type_I_hlyD type I s 88.1 86 0.0019 39.8 25.2 114 1054-1170 154-270 (423)
161 PF08317 Spc7: Spc7 kinetochor 87.9 83 0.0018 39.4 27.4 80 165-258 211-290 (325)
162 KOG0982 Centrosomal protein Nu 87.8 94 0.002 39.8 26.1 40 1132-1171 403-442 (502)
163 KOG4603 TBP-1 interacting prot 87.3 6.3 0.00014 44.2 11.6 81 1283-1363 83-165 (201)
164 PF10481 CENP-F_N: Cenp-F N-te 86.8 44 0.00096 40.4 18.7 162 1385-1594 18-180 (307)
165 KOG0804 Cytoplasmic Zn-finger 86.6 23 0.0005 45.3 17.2 113 1328-1461 332-448 (493)
166 PF06008 Laminin_I: Laminin Do 86.2 88 0.0019 37.9 28.8 57 693-749 180-236 (264)
167 PF11559 ADIP: Afadin- and alp 85.8 18 0.00038 40.2 14.5 94 1269-1366 56-149 (151)
168 TIGR03017 EpsF chain length de 85.6 52 0.0011 42.5 20.8 93 1315-1407 172-276 (444)
169 PF10481 CENP-F_N: Cenp-F N-te 85.4 38 0.00083 40.9 17.3 103 418-527 17-119 (307)
170 TIGR01005 eps_transp_fam exopo 85.3 1.2E+02 0.0025 42.3 25.0 45 1321-1366 288-332 (754)
171 KOG0980 Actin-binding protein 85.0 1.8E+02 0.0039 40.5 43.9 64 7-71 315-378 (980)
172 KOG0971 Microtubule-associated 84.7 1.9E+02 0.004 40.4 86.8 96 939-1039 411-509 (1243)
173 TIGR01010 BexC_CtrB_KpsE polys 84.6 32 0.00068 43.4 17.7 133 1315-1447 171-305 (362)
174 PF12325 TMF_TATA_bd: TATA ele 84.5 29 0.00064 37.6 14.7 43 107-149 68-110 (120)
175 PLN02939 transferase, transfer 84.4 2.1E+02 0.0046 40.8 30.5 130 905-1045 267-398 (977)
176 PF14915 CCDC144C: CCDC144C pr 84.1 1.2E+02 0.0026 37.6 40.6 66 946-1015 180-245 (305)
177 PF15397 DUF4618: Domain of un 84.1 1.1E+02 0.0024 37.3 26.4 32 1529-1560 192-223 (258)
178 COG4372 Uncharacterized protei 84.0 1.3E+02 0.0029 38.1 32.7 83 938-1020 74-159 (499)
179 PF12795 MscS_porin: Mechanose 83.9 1E+02 0.0023 36.8 24.7 142 65-213 31-188 (240)
180 KOG0982 Centrosomal protein Nu 83.9 1.4E+02 0.0031 38.3 30.3 165 108-289 298-471 (502)
181 PF05010 TACC: Transforming ac 83.0 1.1E+02 0.0023 36.3 29.5 90 1053-1152 106-202 (207)
182 TIGR03017 EpsF chain length de 82.7 1.6E+02 0.0035 38.1 24.0 22 906-927 175-196 (444)
183 KOG0250 DNA repair protein RAD 82.7 2.5E+02 0.0054 40.2 69.9 90 1309-1398 691-782 (1074)
184 KOG0243 Kinesin-like protein [ 82.5 2.5E+02 0.0054 40.2 55.1 87 692-778 405-493 (1041)
185 COG3883 Uncharacterized protei 82.4 1.3E+02 0.0028 36.8 24.6 35 1136-1170 159-193 (265)
186 PF13166 AAA_13: AAA domain 82.3 2.2E+02 0.0047 39.3 26.8 34 180-213 420-453 (712)
187 PF11559 ADIP: Afadin- and alp 82.3 40 0.00087 37.4 15.4 83 1372-1457 67-149 (151)
188 PRK10361 DNA recombination pro 81.8 1.1E+02 0.0024 40.3 20.9 51 1352-1402 69-119 (475)
189 KOG2129 Uncharacterized conser 81.7 1.7E+02 0.0036 37.6 21.4 32 19-50 89-124 (552)
190 PF12325 TMF_TATA_bd: TATA ele 81.6 23 0.0005 38.3 12.6 99 1346-1462 12-110 (120)
191 PF05483 SCP-1: Synaptonemal c 81.4 2.2E+02 0.0048 38.8 93.2 139 1193-1344 517-659 (786)
192 PRK10884 SH3 domain-containing 81.2 10 0.00022 44.5 10.7 66 1099-1171 92-157 (206)
193 KOG1853 LIS1-interacting prote 81.1 1.3E+02 0.0029 36.1 21.5 52 963-1014 24-75 (333)
194 COG1340 Uncharacterized archae 80.9 1.5E+02 0.0033 36.7 36.8 41 276-316 200-240 (294)
195 KOG1853 LIS1-interacting prote 80.7 1.4E+02 0.003 36.0 23.4 75 2-82 6-83 (333)
196 PF10498 IFT57: Intra-flagella 80.5 93 0.002 39.7 19.4 78 1382-1462 238-315 (359)
197 smart00787 Spc7 Spc7 kinetocho 80.4 1.7E+02 0.0036 36.8 27.5 135 110-258 147-285 (312)
198 PF04849 HAP1_N: HAP1 N-termin 80.4 1.6E+02 0.0036 36.7 28.4 128 687-821 163-294 (306)
199 TIGR00634 recN DNA repair prot 80.1 1.3E+02 0.0029 40.5 21.8 43 1422-1464 303-345 (563)
200 PF08614 ATG16: Autophagy prot 79.8 14 0.0003 42.8 11.2 87 55-148 71-157 (194)
201 PF10168 Nup88: Nuclear pore c 79.7 1.2E+02 0.0026 42.1 21.4 26 1094-1119 640-665 (717)
202 TIGR00634 recN DNA repair prot 79.3 2.4E+02 0.0053 38.0 26.2 22 568-590 524-545 (563)
203 PF12795 MscS_porin: Mechanose 79.0 1.5E+02 0.0033 35.5 24.0 177 87-317 32-212 (240)
204 PF07106 TBPIP: Tat binding pr 78.5 20 0.00043 40.5 11.7 89 1265-1365 72-160 (169)
205 PF04912 Dynamitin: Dynamitin 78.4 2.1E+02 0.0046 36.8 24.7 48 1104-1151 340-387 (388)
206 TIGR01000 bacteriocin_acc bact 78.0 2.3E+02 0.0051 37.1 22.7 22 334-355 289-310 (457)
207 PF04156 IncA: IncA protein; 77.6 85 0.0018 36.0 16.6 7 1405-1411 129-135 (191)
208 PF08614 ATG16: Autophagy prot 77.6 21 0.00045 41.4 11.7 42 1420-1461 144-185 (194)
209 PF06008 Laminin_I: Laminin Do 77.5 1.8E+02 0.0038 35.4 26.7 115 1347-1461 120-247 (264)
210 PRK09841 cryptic autophosphory 77.0 74 0.0016 44.1 18.6 121 1315-1439 268-389 (726)
211 KOG2991 Splicing regulator [RN 76.8 1.8E+02 0.0039 35.2 19.3 30 1346-1375 170-202 (330)
212 PF09755 DUF2046: Uncharacteri 76.7 2.1E+02 0.0045 35.8 38.0 22 938-959 229-250 (310)
213 PF09304 Cortex-I_coil: Cortex 76.1 57 0.0012 34.7 12.9 71 1354-1424 6-76 (107)
214 PF00769 ERM: Ezrin/radixin/mo 76.0 68 0.0015 38.7 15.8 23 1536-1558 181-203 (246)
215 COG5185 HEC1 Protein involved 76.0 2.6E+02 0.0056 36.5 40.4 133 20-159 258-399 (622)
216 PF04012 PspA_IM30: PspA/IM30 75.9 1.7E+02 0.0037 34.4 22.2 85 1314-1401 51-135 (221)
217 KOG0249 LAR-interacting protei 75.4 1.1E+02 0.0023 41.6 17.8 56 1406-1461 202-257 (916)
218 PRK10884 SH3 domain-containing 75.1 29 0.00064 40.8 12.0 69 26-94 93-161 (206)
219 KOG0249 LAR-interacting protei 74.4 3.2E+02 0.0069 37.5 21.6 130 725-871 69-199 (916)
220 PF04111 APG6: Autophagy prote 74.2 33 0.00072 42.8 12.9 95 1347-1462 40-134 (314)
221 COG2433 Uncharacterized conser 73.0 38 0.00082 45.0 13.2 76 1294-1374 423-498 (652)
222 TIGR02977 phageshock_pspA phag 72.1 2.1E+02 0.0047 33.9 23.2 148 1193-1364 28-180 (219)
223 PF10146 zf-C4H2: Zinc finger- 71.7 21 0.00046 42.6 10.0 22 1537-1558 74-95 (230)
224 PF04728 LPP: Lipoprotein leuc 71.7 25 0.00053 33.3 8.2 45 1301-1345 11-55 (56)
225 TIGR02977 phageshock_pspA phag 71.6 2.2E+02 0.0048 33.8 24.1 90 1318-1410 56-145 (219)
226 PF00769 ERM: Ezrin/radixin/mo 71.1 1.4E+02 0.0031 36.1 16.8 60 1386-1445 62-121 (246)
227 PF10212 TTKRSYEDQ: Predicted 70.6 3.7E+02 0.0079 35.9 24.8 33 836-868 481-513 (518)
228 KOG0992 Uncharacterized conser 68.5 3.9E+02 0.0084 35.4 51.6 110 414-529 476-608 (613)
229 PF12252 SidE: Dot/Icm substra 68.1 3.9E+02 0.0084 38.2 20.9 52 1308-1366 1125-1176(1439)
230 KOG4572 Predicted DNA-binding 68.0 4.7E+02 0.01 36.2 21.4 47 1546-1592 1094-1144(1424)
231 PF06005 DUF904: Protein of un 67.8 57 0.0012 32.4 10.3 33 1401-1433 6-38 (72)
232 PF11180 DUF2968: Protein of u 67.5 1.1E+02 0.0025 35.6 14.0 98 412-526 84-184 (192)
233 PLN03229 acetyl-coenzyme A car 67.0 5E+02 0.011 36.1 25.0 56 190-253 648-704 (762)
234 PF04156 IncA: IncA protein; 67.0 1.6E+02 0.0034 33.8 15.5 10 111-120 141-150 (191)
235 PRK11519 tyrosine kinase; Prov 66.6 2.2E+02 0.0047 39.6 19.4 69 1342-1410 295-364 (719)
236 PF14073 Cep57_CLD: Centrosome 66.5 2.6E+02 0.0055 32.6 18.1 39 1133-1171 37-75 (178)
237 KOG4807 F-actin binding protei 66.5 3.7E+02 0.0079 34.3 30.0 38 1129-1170 450-487 (593)
238 PRK15422 septal ring assembly 66.4 41 0.0009 33.8 8.9 59 1401-1459 6-64 (79)
239 PF07058 Myosin_HC-like: Myosi 66.1 1.9E+02 0.004 36.0 15.9 154 1302-1495 2-161 (351)
240 KOG2991 Splicing regulator [RN 65.8 3.1E+02 0.0067 33.3 22.6 31 1337-1367 95-125 (330)
241 PF04859 DUF641: Plant protein 65.8 1.3E+02 0.0029 33.2 13.6 37 90-126 91-127 (131)
242 PF07106 TBPIP: Tat binding pr 65.7 71 0.0015 36.2 12.2 68 1400-1467 73-142 (169)
243 PF04912 Dynamitin: Dynamitin 65.7 3.9E+02 0.0085 34.4 23.8 51 157-207 210-277 (388)
244 KOG3091 Nuclear pore complex, 65.6 2.1E+02 0.0046 37.6 17.2 116 162-296 375-493 (508)
245 PF14992 TMCO5: TMCO5 family 65.5 3.3E+02 0.0072 33.7 18.1 115 841-974 31-149 (280)
246 KOG4438 Centromere-associated 64.4 4.3E+02 0.0093 34.4 30.3 18 1541-1558 411-428 (446)
247 PRK10698 phage shock protein P 63.4 3.2E+02 0.007 32.6 23.9 93 1316-1411 54-146 (222)
248 TIGR03752 conj_TIGR03752 integ 62.8 28 0.00061 45.2 9.1 41 1302-1342 61-101 (472)
249 PF10205 KLRAQ: Predicted coil 62.7 59 0.0013 34.4 9.7 67 63-136 3-69 (102)
250 PF15035 Rootletin: Ciliary ro 62.4 3E+02 0.0066 32.0 20.8 89 958-1046 87-175 (182)
251 KOG0943 Predicted ubiquitin-pr 62.3 34 0.00074 47.7 9.8 16 1147-1162 1305-1320(3015)
252 KOG1850 Myosin-like coiled-coi 62.0 4.1E+02 0.0088 33.3 33.0 67 1272-1344 87-153 (391)
253 TIGR02680 conserved hypothetic 60.9 8.5E+02 0.018 36.7 73.3 51 1193-1245 436-486 (1353)
254 PF09304 Cortex-I_coil: Cortex 60.9 1.3E+02 0.0028 32.1 11.8 46 1419-1464 36-81 (107)
255 KOG1003 Actin filament-coating 60.3 3.4E+02 0.0075 31.9 27.3 153 989-1166 44-199 (205)
256 PF05384 DegS: Sensor protein 60.2 3.1E+02 0.0067 31.4 16.8 68 673-740 9-76 (159)
257 KOG1103 Predicted coiled-coil 60.2 4.4E+02 0.0095 33.1 35.4 27 1742-1769 431-457 (561)
258 PF06548 Kinesin-related: Kine 60.2 5.2E+02 0.011 33.9 30.3 168 1032-1228 224-421 (488)
259 PF03962 Mnd1: Mnd1 family; I 59.4 66 0.0014 37.4 10.6 40 1321-1364 110-149 (188)
260 PF12777 MT: Microtubule-bindi 58.9 3.6E+02 0.0078 34.2 17.8 65 463-527 251-315 (344)
261 TIGR02680 conserved hypothetic 58.4 9.3E+02 0.02 36.3 72.1 226 1137-1394 740-965 (1353)
262 PF12240 Angiomotin_C: Angiomo 57.9 1.5E+02 0.0033 34.9 12.9 74 810-886 3-91 (205)
263 PF10234 Cluap1: Clusterin-ass 57.6 82 0.0018 38.6 11.3 48 1380-1434 171-218 (267)
264 PF04111 APG6: Autophagy prote 57.6 1.2E+02 0.0026 38.0 13.2 6 1448-1453 113-118 (314)
265 PRK10869 recombination and rep 57.2 6.5E+02 0.014 34.1 26.8 19 1346-1364 201-219 (553)
266 TIGR01000 bacteriocin_acc bact 56.8 5.8E+02 0.013 33.5 23.9 29 941-969 93-121 (457)
267 PF05700 BCAS2: Breast carcino 56.5 4.1E+02 0.009 31.7 18.7 78 946-1023 98-175 (221)
268 PF15290 Syntaphilin: Golgi-lo 56.3 2.9E+02 0.0063 34.1 15.1 51 1102-1166 119-169 (305)
269 KOG4360 Uncharacterized coiled 56.1 3.1E+02 0.0068 36.2 16.2 38 182-219 203-240 (596)
270 PF07462 MSP1_C: Merozoite sur 54.8 6.8E+02 0.015 33.7 23.3 25 1342-1366 46-70 (574)
271 KOG0239 Kinesin (KAR3 subfamil 54.8 7.4E+02 0.016 34.5 20.7 31 185-215 169-199 (670)
272 KOG4360 Uncharacterized coiled 54.8 6.6E+02 0.014 33.5 19.2 27 687-713 162-188 (596)
273 COG1842 PspA Phage shock prote 54.4 4.6E+02 0.01 31.6 24.8 75 1320-1411 58-132 (225)
274 PF13851 GAS: Growth-arrest sp 54.0 4.3E+02 0.0094 31.2 25.0 80 1296-1375 89-168 (201)
275 PF15450 DUF4631: Domain of un 53.6 7E+02 0.015 33.4 65.3 42 691-735 99-140 (531)
276 PF04728 LPP: Lipoprotein leuc 53.4 1E+02 0.0023 29.4 8.7 49 686-734 5-53 (56)
277 COG3937 Uncharacterized conser 52.7 90 0.002 33.2 9.1 92 408-519 14-106 (108)
278 PF11802 CENP-K: Centromere-as 52.6 4.3E+02 0.0094 32.6 16.0 30 1313-1342 51-80 (268)
279 PF14197 Cep57_CLD_2: Centroso 52.3 91 0.002 30.8 8.7 56 1377-1432 11-66 (69)
280 COG4026 Uncharacterized protei 52.3 78 0.0017 37.3 9.4 43 53-95 130-172 (290)
281 PF08647 BRE1: BRE1 E3 ubiquit 52.1 2.2E+02 0.0048 29.7 12.0 26 67-92 5-30 (96)
282 PRK15396 murein lipoprotein; P 51.8 63 0.0014 32.7 7.6 46 1301-1346 33-78 (78)
283 PF11932 DUF3450: Protein of u 51.8 1.2E+02 0.0026 36.5 11.6 63 1402-1464 38-100 (251)
284 PF14073 Cep57_CLD: Centrosome 51.7 4.5E+02 0.0097 30.7 20.7 90 165-254 59-151 (178)
285 PRK10361 DNA recombination pro 50.6 7.6E+02 0.016 33.0 20.9 59 1104-1169 64-122 (475)
286 PF10498 IFT57: Intra-flagella 50.6 4.8E+02 0.01 33.5 17.0 23 77-99 264-286 (359)
287 PF11932 DUF3450: Protein of u 50.2 4.1E+02 0.0089 32.1 15.8 39 1498-1536 80-118 (251)
288 KOG0240 Kinesin (SMY1 subfamil 49.7 8.2E+02 0.018 33.1 20.9 72 1340-1411 404-475 (607)
289 PRK10698 phage shock protein P 49.6 5.3E+02 0.012 30.9 21.4 16 1333-1350 11-26 (222)
290 PF06785 UPF0242: Uncharacteri 49.6 1.4E+02 0.003 37.3 11.4 98 417-524 125-222 (401)
291 KOG1003 Actin filament-coating 49.5 5.1E+02 0.011 30.6 25.1 26 187-212 105-130 (205)
292 PF08172 CASP_C: CASP C termin 49.1 72 0.0016 38.7 9.1 48 109-156 88-135 (248)
293 KOG4403 Cell surface glycoprot 48.9 7.4E+02 0.016 32.3 20.6 52 1656-1715 506-557 (575)
294 PF08647 BRE1: BRE1 E3 ubiquit 48.1 2.8E+02 0.0061 28.9 12.0 56 1379-1434 25-80 (96)
295 PF09738 DUF2051: Double stran 47.4 6.8E+02 0.015 31.5 20.4 85 262-352 81-170 (302)
296 KOG0962 DNA repair protein RAD 47.3 1.3E+03 0.027 34.5 104.5 36 1315-1350 879-914 (1294)
297 KOG3647 Predicted coiled-coil 46.8 92 0.002 37.7 9.1 54 1381-1441 115-175 (338)
298 TIGR03545 conserved hypothetic 46.6 1.9E+02 0.0042 39.0 13.2 111 1336-1464 150-260 (555)
299 PF10234 Cluap1: Clusterin-ass 46.6 1E+02 0.0023 37.7 9.9 60 1300-1363 176-238 (267)
300 TIGR02132 phaR_Bmeg polyhydrox 45.8 5.5E+02 0.012 29.9 16.6 42 106-147 113-154 (189)
301 PRK09343 prefoldin subunit bet 45.4 3.7E+02 0.0081 29.2 12.9 30 1434-1463 85-114 (121)
302 PF05278 PEARLI-4: Arabidopsis 45.3 2.6E+02 0.0057 34.4 12.8 74 1331-1406 169-242 (269)
303 COG4467 Regulator of replicati 45.1 81 0.0018 33.5 7.4 68 1519-1586 4-84 (114)
304 PF10212 TTKRSYEDQ: Predicted 44.6 9.5E+02 0.02 32.3 21.6 50 1415-1464 464-517 (518)
305 PRK10869 recombination and rep 44.2 9.9E+02 0.021 32.5 27.0 23 567-590 513-535 (553)
306 KOG1924 RhoA GTPase effector D 44.1 2.3E+02 0.005 39.0 12.8 17 1116-1132 162-178 (1102)
307 PF04899 MbeD_MobD: MbeD/MobD 43.8 2.3E+02 0.0049 28.3 9.8 54 1119-1172 15-68 (70)
308 PF07200 Mod_r: Modifier of ru 43.5 4.1E+02 0.0089 29.4 13.4 22 5-30 4-25 (150)
309 PF04899 MbeD_MobD: MbeD/MobD 43.5 1.2E+02 0.0027 30.1 8.0 44 484-527 23-66 (70)
310 PRK07720 fliJ flagellar biosyn 43.5 4.9E+02 0.011 28.7 15.5 84 1303-1388 19-102 (146)
311 KOG1899 LAR transmembrane tyro 42.7 1.1E+03 0.023 32.4 20.6 22 1402-1423 170-191 (861)
312 PLN03229 acetyl-coenzyme A car 42.7 1.2E+03 0.025 32.9 21.4 60 1499-1558 670-733 (762)
313 KOG0804 Cytoplasmic Zn-finger 42.5 9.4E+02 0.02 31.7 18.2 14 511-524 139-152 (493)
314 COG1382 GimC Prefoldin, chaper 42.4 4.6E+02 0.0099 28.8 12.7 17 1388-1404 30-46 (119)
315 PF10805 DUF2730: Protein of u 42.2 1.6E+02 0.0035 31.3 9.4 60 465-524 39-100 (106)
316 PF05266 DUF724: Protein of un 41.7 4.4E+02 0.0096 30.9 13.6 12 1331-1342 89-100 (190)
317 KOG4005 Transcription factor X 41.6 1.5E+02 0.0033 35.4 9.7 64 1220-1288 55-120 (292)
318 PF05335 DUF745: Protein of un 41.5 6.5E+02 0.014 29.6 15.7 39 1415-1453 132-170 (188)
319 COG1842 PspA Phage shock prote 41.1 7.2E+02 0.016 30.0 20.8 36 985-1020 11-46 (225)
320 PF06785 UPF0242: Uncharacteri 40.8 8.7E+02 0.019 30.8 16.1 76 181-260 138-217 (401)
321 TIGR02894 DNA_bind_RsfA transc 40.7 6.2E+02 0.013 29.1 14.0 80 1124-1238 45-125 (161)
322 PF13863 DUF4200: Domain of un 40.6 4.8E+02 0.011 27.9 15.7 97 34-130 8-104 (126)
323 PF09744 Jnk-SapK_ap_N: JNK_SA 40.4 2.3E+02 0.005 32.3 10.8 77 1097-1173 47-123 (158)
324 COG3074 Uncharacterized protei 40.1 3.7E+02 0.0081 26.7 10.3 60 465-524 15-74 (79)
325 KOG3172 Small nuclear ribonucl 40.0 22 0.00048 37.2 2.5 13 2030-2043 95-107 (119)
326 PRK15178 Vi polysaccharide exp 39.5 1E+03 0.023 31.4 20.1 127 1334-1460 262-391 (434)
327 PF05377 FlaC_arch: Flagella a 39.4 88 0.0019 29.7 6.0 44 1302-1345 2-45 (55)
328 PF02841 GBP_C: Guanylate-bind 39.3 5.1E+02 0.011 32.1 14.6 59 952-1010 197-255 (297)
329 TIGR03752 conj_TIGR03752 integ 39.0 2.4E+02 0.0053 37.1 11.9 29 1433-1461 115-143 (472)
330 COG0216 PrfA Protein chain rel 38.7 4.5E+02 0.0097 33.4 13.5 25 331-355 78-102 (363)
331 PF02050 FliJ: Flagellar FliJ 38.7 4.5E+02 0.0097 26.9 14.4 66 1309-1377 7-72 (123)
332 PF12709 Kinetocho_Slk19: Cent 38.3 3.4E+02 0.0074 28.2 10.4 36 96-131 52-87 (87)
333 PF10267 Tmemb_cc2: Predicted 37.3 6.2E+02 0.013 33.0 15.0 75 198-272 212-290 (395)
334 PF08826 DMPK_coil: DMPK coile 37.0 2.7E+02 0.0059 27.1 9.0 24 1388-1411 14-37 (61)
335 PRK12704 phosphodiesterase; Pr 36.8 1.2E+03 0.027 31.4 22.4 19 1580-1598 436-454 (520)
336 TIGR02894 DNA_bind_RsfA transc 36.6 6.2E+02 0.014 29.1 13.1 52 440-491 80-134 (161)
337 PF10186 Atg14: UV radiation r 36.5 8.5E+02 0.018 29.5 19.9 61 28-88 22-86 (302)
338 cd07619 BAR_Rich2 The Bin/Amph 36.5 8.9E+02 0.019 29.7 18.4 40 1536-1580 208-247 (248)
339 KOG4603 TBP-1 interacting prot 36.4 5E+02 0.011 30.0 12.2 42 1437-1478 119-160 (201)
340 PF10146 zf-C4H2: Zinc finger- 36.3 5.1E+02 0.011 31.3 13.4 75 451-525 29-103 (230)
341 KOG0972 Huntingtin interacting 36.3 4.8E+02 0.01 32.3 12.9 94 1326-1423 218-325 (384)
342 PF05278 PEARLI-4: Arabidopsis 36.2 9.3E+02 0.02 29.9 17.3 119 1336-1462 101-235 (269)
343 PF15254 CCDC14: Coiled-coil d 36.2 1.4E+03 0.031 32.1 24.8 73 688-760 398-482 (861)
344 TIGR00618 sbcc exonuclease Sbc 36.0 1.7E+03 0.036 32.7 89.1 40 1130-1169 540-579 (1042)
345 PF14257 DUF4349: Domain of un 35.9 1.1E+02 0.0025 36.9 8.2 84 440-524 105-190 (262)
346 KOG0288 WD40 repeat protein Ti 35.9 9.2E+02 0.02 31.5 15.6 65 37-101 6-70 (459)
347 PF11365 DUF3166: Protein of u 35.7 2.1E+02 0.0046 30.1 8.7 82 1135-1219 11-92 (96)
348 cd00632 Prefoldin_beta Prefold 35.5 4.3E+02 0.0094 27.7 11.3 11 1353-1363 9-19 (105)
349 COG2433 Uncharacterized conser 35.3 4E+02 0.0086 36.1 13.0 27 1435-1461 482-508 (652)
350 KOG4196 bZIP transcription fac 34.9 2.2E+02 0.0048 31.4 8.9 39 1305-1343 79-117 (135)
351 TIGR02338 gimC_beta prefoldin, 34.6 5.1E+02 0.011 27.5 11.7 38 1415-1459 69-106 (110)
352 COG4913 Uncharacterized protei 34.4 1.5E+03 0.032 31.7 19.9 93 1309-1401 625-721 (1104)
353 PF15294 Leu_zip: Leucine zipp 34.4 1E+03 0.022 29.7 23.4 224 24-253 35-276 (278)
354 PRK05689 fliJ flagellar biosyn 34.2 6.7E+02 0.015 27.6 14.7 85 1302-1388 18-102 (147)
355 PF11172 DUF2959: Protein of u 34.0 8.4E+02 0.018 29.0 14.0 59 17-77 87-145 (201)
356 TIGR01837 PHA_granule_1 poly(h 33.8 2E+02 0.0044 31.1 8.7 38 1332-1369 78-115 (118)
357 PF14712 Snapin_Pallidin: Snap 33.3 3.3E+02 0.0073 27.7 9.8 63 108-170 15-85 (92)
358 PF10267 Tmemb_cc2: Predicted 33.3 3.8E+02 0.0083 34.8 12.3 68 458-525 230-298 (395)
359 PF03962 Mnd1: Mnd1 family; I 33.2 8.5E+02 0.018 28.5 14.5 36 1432-1467 67-102 (188)
360 COG4026 Uncharacterized protei 33.1 2.8E+02 0.006 33.1 10.0 59 452-510 126-184 (290)
361 TIGR02231 conserved hypothetic 33.0 3.4E+02 0.0073 36.3 12.5 57 1302-1358 73-135 (525)
362 KOG0244 Kinesin-like protein [ 32.8 1.7E+03 0.037 32.0 31.4 44 269-315 523-566 (913)
363 KOG4196 bZIP transcription fac 32.6 5.8E+02 0.013 28.4 11.5 39 1402-1440 77-115 (135)
364 PF10211 Ax_dynein_light: Axon 32.4 7.8E+02 0.017 28.8 13.7 93 961-1056 97-189 (189)
365 PF13094 CENP-Q: CENP-Q, a CEN 32.4 6.6E+02 0.014 28.3 12.9 66 463-528 22-87 (160)
366 KOG1962 B-cell receptor-associ 32.2 5.3E+02 0.011 31.0 12.3 37 115-151 173-209 (216)
367 PRK14158 heat shock protein Gr 31.8 5.9E+02 0.013 30.1 12.5 25 1582-1606 115-139 (194)
368 PF05266 DUF724: Protein of un 31.7 9.1E+02 0.02 28.4 15.7 14 1350-1363 69-82 (190)
369 PF04380 BMFP: Membrane fusoge 31.7 3.8E+02 0.0082 27.1 9.6 46 1332-1377 32-77 (79)
370 TIGR03545 conserved hypothetic 31.6 3.8E+02 0.0082 36.4 12.4 46 1327-1373 190-235 (555)
371 PF10046 BLOC1_2: Biogenesis o 31.2 6.4E+02 0.014 26.5 13.3 81 267-348 5-85 (99)
372 KOG1103 Predicted coiled-coil 31.2 9.2E+02 0.02 30.5 14.2 41 777-817 247-287 (561)
373 PF03915 AIP3: Actin interacti 31.2 1.4E+03 0.03 30.3 17.3 81 1342-1433 238-319 (424)
374 KOG1962 B-cell receptor-associ 31.1 5.3E+02 0.011 31.0 12.0 46 1277-1322 149-194 (216)
375 PF12777 MT: Microtubule-bindi 30.9 2.3E+02 0.0049 35.9 9.9 18 1332-1349 201-218 (344)
376 PF09731 Mitofilin: Mitochondr 30.8 1.5E+03 0.033 30.7 27.0 46 410-455 464-509 (582)
377 PF07200 Mod_r: Modifier of ru 30.5 7.8E+02 0.017 27.2 17.9 110 103-213 23-139 (150)
378 PF06705 SF-assemblin: SF-asse 30.5 1E+03 0.022 28.7 30.2 57 1225-1283 6-62 (247)
379 PF08581 Tup_N: Tup N-terminal 30.2 6.1E+02 0.013 25.9 11.3 18 997-1014 38-55 (79)
380 PF05384 DegS: Sensor protein 30.1 9E+02 0.019 27.8 20.2 71 86-156 77-147 (159)
381 TIGR03319 YmdA_YtgF conserved 30.1 1.5E+03 0.033 30.5 22.7 21 983-1003 61-81 (514)
382 PF04100 Vps53_N: Vps53-like, 30.0 1.2E+03 0.027 30.1 16.3 15 1084-1098 135-149 (383)
383 PF02183 HALZ: Homeobox associ 29.9 1.7E+02 0.0037 26.7 6.1 32 50-81 4-35 (45)
384 cd07595 BAR_RhoGAP_Rich-like T 29.9 1.1E+03 0.024 28.8 17.5 122 180-312 96-227 (244)
385 PF09457 RBD-FIP: FIP domain ; 29.8 1.7E+02 0.0038 27.1 6.2 46 413-458 1-46 (48)
386 PRK09343 prefoldin subunit bet 29.8 7.6E+02 0.016 26.9 13.4 35 944-978 13-47 (121)
387 PF03915 AIP3: Actin interacti 29.7 1.4E+03 0.031 30.1 17.9 151 973-1165 158-308 (424)
388 TIGR02449 conserved hypothetic 29.5 3.8E+02 0.0082 26.5 8.7 50 687-736 10-59 (65)
389 PF09766 FimP: Fms-interacting 29.2 4E+02 0.0086 34.1 11.6 113 417-529 10-148 (355)
390 TIGR01834 PHA_synth_III_E poly 28.3 5.9E+02 0.013 32.3 12.4 87 412-519 228-319 (320)
391 PF15272 BBP1_C: Spindle pole 28.3 1.1E+03 0.023 28.1 19.2 83 938-1020 12-104 (196)
392 PF09731 Mitofilin: Mitochondr 28.2 1.6E+03 0.036 30.3 23.1 11 1549-1559 432-442 (582)
393 TIGR00998 8a0101 efflux pump m 28.2 1.2E+03 0.027 28.8 17.2 61 1304-1369 105-165 (334)
394 PF05791 Bacillus_HBL: Bacillu 27.7 9.2E+02 0.02 28.0 13.3 26 125-150 153-178 (184)
395 PLN03188 kinesin-12 family pro 27.5 2.4E+03 0.051 31.9 27.5 24 1135-1158 1228-1252(1320)
396 PRK03947 prefoldin subunit alp 27.5 8.5E+02 0.018 26.7 12.9 95 1350-1444 6-139 (140)
397 COG4487 Uncharacterized protei 27.3 1.6E+03 0.034 29.8 22.3 28 1434-1461 114-142 (438)
398 PF02403 Seryl_tRNA_N: Seryl-t 27.2 4.3E+02 0.0094 27.6 9.7 75 1090-1165 26-100 (108)
399 PF06103 DUF948: Bacterial pro 27.0 5.8E+02 0.012 25.9 10.3 67 455-521 20-86 (90)
400 PF07889 DUF1664: Protein of u 27.0 9E+02 0.019 26.8 12.8 26 841-866 49-74 (126)
401 PF15035 Rootletin: Ciliary ro 26.8 1.1E+03 0.023 27.7 18.0 39 175-213 72-117 (182)
402 KOG2077 JNK/SAPK-associated pr 26.7 8.2E+02 0.018 32.9 13.4 79 135-213 301-379 (832)
403 PF09766 FimP: Fms-interacting 26.6 1.2E+03 0.025 30.0 15.0 67 1277-1354 3-72 (355)
404 PF05911 DUF869: Plant protein 26.6 2.1E+03 0.045 30.9 65.5 574 943-1546 22-759 (769)
405 PRK10929 putative mechanosensi 26.5 2.4E+03 0.051 31.6 48.1 19 1136-1154 337-355 (1109)
406 PF00170 bZIP_1: bZIP transcri 26.5 2.7E+02 0.0059 26.6 7.3 44 484-527 21-64 (64)
407 KOG4421 Uncharacterized conser 26.0 1.1E+03 0.024 30.0 13.8 154 56-234 13-166 (637)
408 COG0497 RecN ATPase involved i 25.8 1.9E+03 0.04 30.1 24.9 18 1346-1363 201-218 (557)
409 PF06810 Phage_GP20: Phage min 25.7 4.8E+02 0.01 29.6 10.3 13 1449-1461 52-64 (155)
410 PF12761 End3: Actin cytoskele 25.5 3.9E+02 0.0084 31.6 9.5 98 1344-1441 88-195 (195)
411 COG1730 GIM5 Predicted prefold 25.4 1E+03 0.022 27.0 12.9 43 1415-1457 96-138 (145)
412 PF12764 Gly-rich_Ago1: Glycin 25.3 60 0.0013 34.1 2.8 10 2031-2040 8-17 (104)
413 KOG4677 Golgi integral membran 25.2 1.7E+03 0.037 29.5 29.1 265 834-1110 189-469 (554)
414 PRK12704 phosphodiesterase; Pr 25.0 1.8E+03 0.04 29.8 21.7 9 1566-1574 210-218 (520)
415 cd07618 BAR_Rich1 The Bin/Amph 24.6 1.4E+03 0.03 28.1 17.1 135 1424-1580 104-245 (246)
416 PF01486 K-box: K-box region; 24.4 5.7E+02 0.012 26.6 9.9 29 1135-1163 71-99 (100)
417 PF13166 AAA_13: AAA domain 24.4 2E+03 0.044 30.1 24.4 11 20-30 270-280 (712)
418 PF08581 Tup_N: Tup N-terminal 24.2 7.8E+02 0.017 25.2 10.5 75 437-517 1-78 (79)
419 PF12329 TMF_DNA_bd: TATA elem 24.1 7.2E+02 0.016 24.9 9.9 16 104-119 9-24 (74)
420 PRK10476 multidrug resistance 24.0 1.5E+03 0.033 28.4 16.8 124 1028-1163 84-207 (346)
421 TIGR02231 conserved hypothetic 23.8 5.2E+02 0.011 34.6 11.9 32 1347-1378 68-99 (525)
422 PF02403 Seryl_tRNA_N: Seryl-t 23.8 4.5E+02 0.0098 27.5 9.1 9 1425-1433 72-80 (108)
423 PF06810 Phage_GP20: Phage min 23.8 3.2E+02 0.0069 31.0 8.4 60 938-1001 20-79 (155)
424 PF05700 BCAS2: Breast carcino 23.8 7.4E+02 0.016 29.6 11.9 53 22-74 146-198 (221)
425 KOG3647 Predicted coiled-coil 23.7 4.8E+02 0.01 32.0 9.9 74 1271-1362 104-180 (338)
426 cd07666 BAR_SNX7 The Bin/Amphi 23.6 1.2E+03 0.027 28.4 13.7 115 403-520 76-194 (243)
427 PRK15374 pathogenicity island 23.3 2E+03 0.044 29.6 28.0 78 875-968 132-209 (593)
428 PF06705 SF-assemblin: SF-asse 23.2 1.4E+03 0.03 27.6 35.5 19 843-861 35-53 (247)
429 PF05529 Bap31: B-cell recepto 23.1 2.9E+02 0.0063 31.9 8.3 32 1348-1379 152-183 (192)
430 TIGR02338 gimC_beta prefoldin, 23.1 9.2E+02 0.02 25.6 13.2 24 943-966 8-31 (110)
431 PF04420 CHD5: CHD5-like prote 23.0 1.9E+02 0.004 32.9 6.5 49 696-746 38-86 (161)
432 PF14988 DUF4515: Domain of un 23.0 1.3E+03 0.029 27.4 27.4 191 26-231 4-199 (206)
433 KOG4657 Uncharacterized conser 22.9 1.4E+03 0.031 27.7 18.3 28 106-133 99-126 (246)
434 PF08826 DMPK_coil: DMPK coile 22.7 7.3E+02 0.016 24.3 9.9 48 481-528 10-57 (61)
435 PF15456 Uds1: Up-regulated Du 22.7 9.1E+02 0.02 26.6 11.2 28 1342-1369 14-41 (124)
436 PF02183 HALZ: Homeobox associ 22.5 2.7E+02 0.0058 25.5 6.0 27 56-82 3-29 (45)
437 PRK09841 cryptic autophosphory 22.4 2.3E+03 0.049 30.0 17.9 28 52-79 268-295 (726)
438 PF06721 DUF1204: Protein of u 22.3 1.3E+03 0.028 27.1 14.0 58 292-354 45-102 (228)
439 PRK04406 hypothetical protein; 22.3 5.3E+02 0.011 26.0 8.6 55 468-522 4-58 (75)
440 PF08172 CASP_C: CASP C termin 22.2 7.1E+02 0.015 30.5 11.4 53 453-522 81-133 (248)
441 KOG1850 Myosin-like coiled-coi 22.1 1.7E+03 0.037 28.3 39.6 42 1193-1240 84-125 (391)
442 TIGR02449 conserved hypothetic 22.0 5.2E+02 0.011 25.6 8.2 41 784-824 16-60 (65)
443 PF15254 CCDC14: Coiled-coil d 22.0 2.4E+03 0.052 30.1 25.0 59 23-81 331-403 (861)
444 PRK11578 macrolide transporter 21.9 6.1E+02 0.013 32.2 11.5 30 1336-1366 131-160 (370)
445 PF11544 Spc42p: Spindle pole 21.9 4.2E+02 0.0091 26.9 7.6 41 118-158 2-42 (76)
446 COG3352 FlaC Putative archaeal 21.8 9.8E+02 0.021 27.4 11.2 102 1345-1467 39-141 (157)
447 KOG3293 Small nuclear ribonucl 21.6 74 0.0016 34.3 2.7 6 2040-2045 102-107 (134)
448 TIGR02971 heterocyst_DevB ABC 21.3 1.6E+03 0.035 27.8 18.8 64 1302-1370 92-155 (327)
449 KOG0288 WD40 repeat protein Ti 21.3 1.2E+03 0.026 30.5 13.2 28 1305-1332 46-73 (459)
450 PF10384 Scm3: Centromere prot 21.2 1.1E+02 0.0023 29.4 3.4 22 1327-1348 8-29 (58)
451 PF01920 Prefoldin_2: Prefoldi 21.0 9.1E+02 0.02 24.7 12.3 35 945-979 5-39 (106)
452 PF07989 Microtub_assoc: Micro 20.6 5.2E+02 0.011 26.1 8.2 55 1320-1374 6-60 (75)
453 PF07246 Phlebovirus_NSM: Phle 20.4 1.1E+03 0.024 29.2 12.3 37 180-216 205-241 (264)
454 PF05546 She9_MDM33: She9 / Md 20.4 1.5E+03 0.033 27.1 15.3 112 1388-1502 5-131 (207)
455 COG0497 RecN ATPase involved i 20.3 2.3E+03 0.05 29.2 25.9 55 24-79 145-199 (557)
456 PF13094 CENP-Q: CENP-Q, a CEN 20.3 6.6E+02 0.014 28.3 10.1 63 687-749 23-85 (160)
457 KOG1899 LAR transmembrane tyro 20.2 2.4E+03 0.052 29.3 21.1 37 1570-1606 285-321 (861)
458 KOG1832 HIV-1 Vpr-binding prot 20.1 56 0.0012 44.8 1.8 21 1740-1760 1322-1342(1516)
459 PRK11677 hypothetical protein; 20.0 3.7E+02 0.0081 30.0 7.7 47 1064-1110 31-78 (134)
No 1
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=100.00 E-value=2e-167 Score=1639.92 Aligned_cols=1773 Identities=29% Similarity=0.365 Sum_probs=1499.4
Q ss_pred CCCCCChHHHhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1 MPLFVSDEEMSRLSNDA-AAVAAKADAYIRYLQTDFETVKARADAAAITAEQTCSLLEQKFISLQEEFSKVESQNAQLQK 79 (2058)
Q Consensus 1 ~~~~~s~eEl~~~~~~~-~~i~~K~e~~i~~l~~el~t~KA~~e~~~i~aEQ~~~~lEqk~~sl~~e~~~le~e~~eL~~ 79 (2058)
|++|+....++.+..|+ -.|...+..||.....+|+.+|+++..+.+++||+|+.+++||..+...|+.+..+++.++.
T Consensus 1 m~~~~~~~~~~~~~~~~~~~V~~d~~~~l~~k~~~~~~lk~e~~k~~v~~eq~~~~~ekK~~~l~q~~~~~~~q~~~~~~ 80 (1822)
T KOG4674|consen 1 MDILGVESFLDVLSEDISPLVDVDVFKKLPKKSKDFESLKDEDGKTEVNHEQQLSELEKKILRLEQRLSDLSRQAKLLRN 80 (1822)
T ss_pred CcchhHHHHhhcchhhcccccccHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888877776666665 36788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 045447 80 SLDDRVNELAEVQSQKHQLHLQLIGKDGEIERLTMEVAELHKSRRQLMELVEQKDLQHSEKGATIKAYLDKIINLTDNAA 159 (2058)
Q Consensus 80 ~l~~~~~Ela~~q~~~~~L~~~~~~~dseverLr~ei~eLe~ekr~ll~llErk~~e~eel~e~l~~l~eKi~eL~~~~~ 159 (2058)
.+.....++..+....+.+..........++.|+...++++.++|.|+.+++++.++++.+..+++.|++++..++..++
T Consensus 81 e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~ 160 (1822)
T KOG4674|consen 81 ELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKTLS 160 (1822)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHhhhhh
Q 045447 160 QREARLAETEAELARAQATCTRLTQGKELIERHNAWLNEELTSKVNSLVELRRTHADLEADMSAKLSDVERQFSECSSSL 239 (2058)
Q Consensus 160 ~~e~rl~e~es~~~s~k~~e~RLeQE~eLLqknneWLe~ELk~KteEll~~Rre~~~~e~~l~aki~eLqre~~E~~ssL 239 (2058)
+++.++++..+..++++|++.||+||++||+++|.||+.+|.++++.|+.+||+|+....++..++..+...+.++..++
T Consensus 161 e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~ 240 (1822)
T KOG4674|consen 161 ELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKN 240 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 045447 240 NWNKERVRELEIKLSSLQEEFCSSKDAAAANEERFSTELSTVNKLVELYKESSEEWSRKAGELEGVIKALETQLAQVQND 319 (2058)
Q Consensus 240 ~~sk~rv~eLe~Kl~~lqe~L~~~ke~~a~~ee~fr~EL~aq~RLaeLyke~aee~~~k~~ELe~~ikeLe~~L~q~e~~ 319 (2058)
.+.+.++.+|+.++.++..+|..+++++..++..|.+||.++++|++||++.+++|..++++|.++|.+++..|+.+...
T Consensus 241 ~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q~kL~eL~ks~~ee~~~~~~el~~~i~~~~klled~~~~ 320 (1822)
T KOG4674|consen 241 KSLKQQNEELSKKIESLNLELSKLKDTAESSEEKFEKELSTQKKLNELWKSKLEELSHEVAELQRAIEELEKLLEDASER 320 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCcccccccccccccCccccccccccCCCCCCCC
Q 045447 320 CKEKLEKEVSAREQLEKEAMDLKEKLEKCEAEIESSRKTNELNLLPLSSFSTETWMESFDTNNISEDNRLLVPKIPAGVS 399 (2058)
Q Consensus 320 ~~e~LEkE~~~~~~lEke~~eLkekl~~lE~Ele~~~~anel~~~~lsa~~~~~~~~~~~~s~~~e~~~~~~p~~~~g~s 399 (2058)
+.+.++.-.....-+.+....+..+|.+|+.+|+..+..+ ++ .++ . .| ++
T Consensus 321 ~~e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~-------~~--~~~-------~------~~--------~s 370 (1822)
T KOG4674|consen 321 NKENTDQLKELEQSLSKLNEKLEKKVSRLEGELEDANDSL-------SA--TGE-------S------SM--------VS 370 (1822)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-------Hh--hcc-------c------ch--------hh
Confidence 8887777777777888888899999999999988653211 11 000 0 11 12
Q ss_pred c-hHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHH
Q 045447 400 G-TALAASLLRDGWSLAKIYAKYQEAVDALRHEQLGRKESEAVLQRVLYELEEKAGIILDERAEYERMVDAYSAINQKLQ 478 (2058)
Q Consensus 400 ~-tAaAss~~KsG~SLTqlYt~Yve~k~qL~~Er~en~rLq~~Ld~Iv~ELEeKAP~L~eqR~EyErl~~~~~~Ls~~Le 478 (2058)
+ +|++++++++||+||++|++|..++.+|...+.+.++++.+|.+|+.++..++|+|+++|.+|+||...+..|+.+|+
T Consensus 371 ~~~a~~s~~~~~~~sLtk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~ 450 (1822)
T KOG4674|consen 371 EKAALASSLIRPGSSLTKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELD 450 (1822)
T ss_pred hHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 466889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcCCCCcccchhhhhhhcccCCCCCch
Q 045447 479 NFISEKSSLEKTIQELKADLRMRERDYYLAQKEISDLQKQVTVLLKECRDIQLRCGLSRIEFDDDAVAIADVELAPESDA 558 (2058)
Q Consensus 479 qa~~Erd~leke~r~a~~~l~~~eREn~~Lk~Ql~DLsrQV~vLL~Ev~~~qlr~g~~g~~~~~d~~~is~~~~~d~SdT 558 (2058)
.++.++..+++.+..+..++.+.+|+|+.|.+++.||++|||+|+.||.+++.+++...+ +..+.+++|+
T Consensus 451 ~~~q~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv~~Ll~el~e~~~~~~~~~~----------s~~~~~es~S 520 (1822)
T KOG4674|consen 451 FSNQKIQKLEKELESLKKQLNDLERENKLLEQQISDLSRQVNVLLLELDELRKGSKITVS----------SDSTENESDS 520 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC----------ccccccCccH
Confidence 999999999999999999999999999999999999999999999999986544432211 1225688999
Q ss_pred hhhhhhccccccchHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 559 EKIISEHLLTFKDINGLVEQNVQLRSLVRNLSDQIESREMEFKDKLELELKKHTDEAASKVAAVLDRAEEQGRMIESLHT 638 (2058)
Q Consensus 559 ~~vISerLVtFkdI~ELQeQNqeLL~vvReLs~klE~eE~e~~e~le~Elk~~~dEa~~~l~~l~e~~eeQ~~miESl~k 638 (2058)
+.|||+|||+|+||.|||+||++||.+||+||+++|..+......+...++..+++|...|++|...+.++.++|++|++
T Consensus 521 ~~iIse~Lv~F~nI~eLqekN~eLL~~vR~Lae~lE~~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~ 600 (1822)
T KOG4674|consen 521 EEIISERLVEFSNINELQEKNVELLNAVRELAEKLEAAEKTQDKTLQNILKETINEASEKIAELEKELEEQEQRIESLLT 600 (1822)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHhhhc-CCCccccccCCCCchhhhHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 639 SVAMYKRLYEEEHKLH-SSHTQYIEAAPDGRKDLLLLLEGSQEATKRAQEKMAERVRCLEDDLGKARSEIIALRSERDKL 717 (2058)
Q Consensus 639 eRDMyR~Ll~e~~~l~-ss~~~s~~~~~~g~~~~~~~lE~sq~~~~~a~~q~~e~~k~L~eql~k~r~El~~LrsE~~K~ 717 (2058)
+|||||.++......+ ..++.+....++........+.+.+...........++++.++++|+.++.++..++++..|+
T Consensus 601 erd~y~e~l~~~e~~~~~k~nss~~~~t~~~~~~e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~ 680 (1822)
T KOG4674|consen 601 ERDMYKELLAELEDSHQLKPNSSALDQTEAPRAKEKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKL 680 (1822)
T ss_pred HHHHHHHhhhcccccccCCCCchhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 9999976665422111 111111111110000012334444444444445567889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 045447 718 ALEAEFAREKLDSVMREAEHQKVEVNGVLARNVEFSQLVVDYQRKLRETSESLNAAQELSRKLAMEVSVLKHEKEMLSNA 797 (2058)
Q Consensus 718 s~q~e~a~ER~e~Lq~n~e~~r~E~~sL~~rn~eLs~~~~k~e~~l~~~~e~L~aaeel~~~L~~E~~nLKaEK~Llk~~ 797 (2058)
..+..||.+||+||+.+++++|.++.+|.+||..|..++.+|+++++.++++|..|.+.++.+.+++.|||.|+.|++..
T Consensus 681 ~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t 760 (1822)
T KOG4674|consen 681 KNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKET 760 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHH
Q 045447 798 EQRAYDEVRSLSQRVYRLQASLDTIQNAEEVREEARAAERRKQEEYIKQVEREWAEAKKELQEERDNVRLLTSDREQTLK 877 (2058)
Q Consensus 798 E~RL~~EnesL~~e~~rLqs~L~tiQs~~e~REeses~~Rrrle~~Ie~LE~Els~lKkrL~eE~e~~r~L~~~re~~~~ 877 (2058)
+.||.++++.|..+..+|+.++.++|+..+.++++.+..|.+++.+|+.|+++|+.+|++|+++++.+|.++...+.++.
T Consensus 761 ~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~ 840 (1822)
T KOG4674|consen 761 EERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLE 840 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCccccCCCCCCc----hhHhHHHhHHHHHHHHHH
Q 045447 878 NAVKQVEEMGKELATALRAVASAETRAAVAETKLSDMEKRIRPLDAKGDEVDDGSRPS----DEVQLQVGKEELEKLKEE 953 (2058)
Q Consensus 878 e~qkrid~l~~El~~~~eal~~aetr~~vle~rv~~Le~kL~~~~~k~~s~~~~~~~s----~E~eL~~lk~ELe~lkee 953 (2058)
|++.+|+++..++.+++..+..+.+..+.++.++.+|.++|+....++..++...... .+..|+....++..+++.
T Consensus 841 ~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~ 920 (1822)
T KOG4674|consen 841 NAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEE 920 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999887765554321111 235577777888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHH
Q 045447 954 AQANREHMLQYKSIAQVNEAALKEMETVHENFRTRVEGVKKSLEDELHSLRKRVSELERENILKSEEIASAAGVREDALA 1033 (2058)
Q Consensus 954 L~~Ak~qveQYK~IAqsaEeaL~~l~~~~e~yK~e~E~~l~e~e~ei~~L~~ri~eLe~El~~~~eE~~~~~~~~e~ql~ 1033 (2058)
|..|++||.+|+.++.++|.+|..++..|++|+.++++.+.....++..|+.+|.+|..++..+..++...+.+++.++.
T Consensus 921 L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~ 1000 (1822)
T KOG4674|consen 921 LTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLL 1000 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1034 SAREEITSLKEERSIKISQIVNLEVQVSALKEDLEKEHERRQAAQANYERQVILQSETIQELTKTSQALASLQEQASELR 1113 (2058)
Q Consensus 1034 ~l~~El~~Lk~E~~~~~~~~~~~E~q~~~l~~DL~~Q~~~a~eAQ~nYErElvLHAe~IqeL~k~~e~~~~lq~e~~elr 1113 (2058)
.+..+|+.++++...+...+..+...+..+++||..++++|+.||.+|+++||+|+++++.|.+++++++.++.++..|+
T Consensus 1001 ~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk 1080 (1822)
T KOG4674|consen 1001 DLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLK 1080 (1822)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCCCCCchh
Q 045447 1114 KLADALKAENSELKSKWELEKSVLEKLKNEAEEKYDEVNEQNKILHSRLEALHIQLTEKDGSSVRISSQSTDSNPIGDAS 1193 (2058)
Q Consensus 1114 ~~aesak~~L~e~e~SWeeqk~~Le~Ei~el~~R~eDL~~QN~LLH~QLE~lt~Qia~~~~~~a~~ss~s~~~~s~~~e~ 1193 (2058)
..++.+...+.....+|.+++.+|++++..++.||.+|..||++||+||+.++.++++ +.+|.+ ..|.+|
T Consensus 1081 ~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~--------~n~S~~--~~g~sd 1150 (1822)
T KOG4674|consen 1081 KSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAV--------SNLSAM--LLGLSD 1150 (1822)
T ss_pred hhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--------cccccc--ccchHH
Confidence 9999999999999999999999999999999999999999999999999999987654 122322 234688
Q ss_pred HHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHh
Q 045447 1194 LQSVISFLRNRKSIAETEVALLTTEKLRLQKQLESALKAAENAQASLTTERANSRAMLLTEEEIKSLKLQVRELNLLRES 1273 (2058)
Q Consensus 1194 L~eVI~yLRREKEIae~qlel~~qE~~RLqqQle~~qkqLdEar~~L~~Ere~s~t~~~s~e~hkeLmeKleqLNlLRES 1273 (2058)
|+.||+||||||||++++|++++.|+.||++++...++.+++++..|+.+|.+.+..+++..+|..+|.++++||+||||
T Consensus 1151 L~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~Es 1230 (1822)
T KOG4674|consen 1151 LQNIVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRES 1230 (1822)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHH
Q 045447 1274 NVQLREENKYNFEECQKLREVAQKTKSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYD 1353 (2058)
Q Consensus 1274 N~tLReE~~~~~~k~qkL~e~lqk~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e 1353 (2058)
|++||+++.++..+|+.|+..+.+++.++.||+..+.++.+++..+..+++.|+++.+|||+|.|+|+++|.++||.+|+
T Consensus 1231 N~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~ 1310 (1822)
T KOG4674|consen 1231 NKVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYE 1310 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHH-------HHHH
Q 045447 1354 RLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEM-------EKQK 1426 (2058)
Q Consensus 1354 ~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~-------e~~~ 1426 (2058)
+|+.+|..|+++|..+...++.++..+...+..+++.-+.+..+...+..-..++.++....++.-.+. .+.+
T Consensus 1311 kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q~~el~~~~ 1390 (1822)
T KOG4674|consen 1311 KLKSEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQELELSDKK 1390 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988888777777777777655556666544444333222 2222
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcchhHHHHhhh-----hhhhHHHHHHHHHHHHH
Q 045447 1427 RISAQLR----RKCEMLSKEKEESIKENQSLARQLDDLKQGKKSTGDVTGEQVMKEKE-----EKDTRIQILERTVERQR 1497 (2058)
Q Consensus 1427 ~~~~~~k----~~~e~~~~e~~e~~~e~~~l~~q~~~~k~~~~~~~~~~~~q~~ke~~-----~~~~~~~~~~~~~e~~~ 1497 (2058)
....+.+ ++++... ++.++..++++|.+++++.-+-..++.+ ..+++.++.+ ++..+++.+.+..-.+.
T Consensus 1391 ~~~~~~~e~t~rk~e~~~-~k~~~~~e~~sl~eeL~e~~q~~~~~~s-~~e~i~~e~~~~~k~~~~~~~e~~~~~i~~~~ 1468 (1822)
T KOG4674|consen 1391 KAHELMQEDTSRKLEKLK-EKLELSEELESLKEELEELQQLQATLQS-ETEAITKELFEAKKEEEKSTTERLLEEIKKLL 1468 (1822)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHhHHHHhhh-hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 2222222 2333332 2333668899999999885332222222 4444444332 23358899999888888
Q ss_pred HHHHHhhhhhH-------HHHHHhhhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCc
Q 045447 1498 EELKKEKDDNQ-------KEKEKRLKGEKVMLDSAKLADQWKTRIS---SELEQHKQAVKRLSDELEKLKHTEAGLPEGT 1567 (2058)
Q Consensus 1498 ~~~~~e~~~~~-------~~~~~~~~~e~~~~~~~~~~~~~~~~~~---~~~e~~~~~~~~l~~el~~~~~~~~~~~~~~ 1567 (2058)
+.++++..+.+ .++....+....++...+++.+++.+|+ ...+++...|.++..+|++.+++. +|+++
T Consensus 1469 e~~~~~~~~~~~~~~~le~~k~e~~~e~e~~~~~~~~~~~E~lk~r~Rl~~eeq~~~~I~rl~~eLe~~~~~~--l~E~~ 1546 (1822)
T KOG4674|consen 1469 ETVRKKTVDADSKSENLEGTKKELESEKEELKQRLTELAAENLKLRSRLAKEEQYQKEISRLKEELESTKEAK--LEENT 1546 (1822)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH--HHhcc
Confidence 88888877754 4566667777788888899999999997 556699999999999999999977 99999
Q ss_pred ceeeccCccchhhhhhHHHHHHHHHHHhhhhhhhhcCCC---CCCCccchhhhhhhhhccCcccccCCCccccCCCCCCc
Q 045447 1568 SVVQLLSGTNLDDHASSYFSAVESFERVARSVIVELGTC---GPSETSLALDAAAAAATTGSAVATLAPVTASSAGPGTI 1644 (2058)
Q Consensus 1568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1644 (2058)
..++..+|..+-+ |++...+.-..+... .|++++.+..+++..++ .+..|-..+.|++..+.
T Consensus 1547 ~~~e~s~~~~~~~-----------~~~~~~~~~e~~~e~lk~~~~~~~~s~~~~~~~~~----~~~~~s~~~~~~~~~t~ 1611 (1822)
T KOG4674|consen 1547 ESSETSRMLDLQN-----------QEEDLSAIKEKLTEELKNLPSVSTASERPAAKQAI----ATSSSSENSSSQAAITQ 1611 (1822)
T ss_pred chhcccccchhhH-----------HHHHHhhccCCcHHHhccCCCcCchhhchhhhhcc----cccCcccccchhhhhhh
Confidence 9999999999888 333332211111111 22221011222222211 11223233455555566
Q ss_pred CCCccccCccc-cccCCCCcccccCCCCcccccccCCCCCCCCCcccccccCCCcCCCCCCCcchhhcccccc---cccc
Q 045447 1645 HLPVKATDGKE-RVNLPKTNAETRKPGRRLVRPRLKRPEESQGDMETSEAEGSNITGKVAASHDAETQGNLAL---QSQL 1720 (2058)
Q Consensus 1645 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 1720 (2058)
..+++..+.++ +.+-.+|+.+. | |..+..||..+|-+..+.+++.+. .++-|+. ..+.
T Consensus 1612 ~~~~~~~~~~~~~~~~~~e~~~~---~-------------~~V~~~~~~~e~q~~~~~~~~q~r--~~~~l~~~~k~~~~ 1673 (1822)
T KOG4674|consen 1612 QVNEVSKSNDAIRQTTLKESQLA---A-------------PNVAKSHPELESQGDESIQPLQQR--SKLFLSELEKSLES 1673 (1822)
T ss_pred hccccccchHHHHHhhhhhhhhh---h-------------hhhccccHHHHhhhccccCchhhc--ccchhhhHHHHHHH
Confidence 66666666666 55555666655 1 788888889998888788888776 3333443 3445
Q ss_pred ccccccC-CCchhhhhccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCC-CCCcchhhhhhhcCCCCCCchhh
Q 045447 1721 SARKRPA-STTTELREESLSQGEPSSDVPAPVLKKSKLPDSSSEDAGGQSASPLED-TQPTTEESVEAVGDLAQGSNEEA 1798 (2058)
Q Consensus 1721 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 1798 (2058)
..+++++ ++++.|+-+++..|..+||+.||.-....|+.|.+.++++ .+- .-|-..+.+.......+|.+..
T Consensus 1674 l~~~~~~~s~~~~p~ss~~~~~t~~s~~~~~~ep~~~~s~S~~~~~~~-----~~~~~~~~~~~vt~~~~~~k~~~~~~- 1747 (1822)
T KOG4674|consen 1674 LVKPLVASSKVSEPSSSSAPLETVASDIDPPQEPDASISASQQLASVT-----SELKLEPSGKSVTTNGSTSKQGIEQG- 1747 (1822)
T ss_pred HhhhhccCCccCCcccCcchhcccccccCcccCCccccccccCCchhh-----hcccCCCCccccccCCcccccccccc-
Confidence 6778888 6677888999999999999999944444444444444332 111 3333222233312234444444
Q ss_pred hhhhhhhhhcccccchhhccccCCCCc----cccccccCcchhhhhccCCCCCcc-cccCCCCcchhhhhhhhccccccc
Q 045447 1799 VEAEKEEVDNTGEKAEEMKESHQVDTT----SEAELQNDKNDVLEENLDRPTGVE-MACDDGSKDQAEQENQQLTLESES 1873 (2058)
Q Consensus 1799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 1873 (2058)
+..++...|..+ +.+|-++ ++..|+ +.|.+++ |+- .+++|+++..++..-+|++
T Consensus 1748 -----~~~e~d~~k~kE---~~p~~~~e~~e~~~~~~-----------~~~~~~~~~~t-~~s~d~~~~~dd~~~~~s~- 1806 (1822)
T KOG4674|consen 1748 -----TDVENDTKKKKE---SGPMEAQEESEKQATID-----------NSPEDVEQLPT-IESRDQTENRDDSFVIDSD- 1806 (1822)
T ss_pred -----cccccccccccc---cCccchhhhhhhhcccc-----------cCcchhhhccc-cchhhhhhcccchhccCcc-
Confidence 333333333322 2233332 223333 4566666 555 7889999998888889998
Q ss_pred cccccccCCCcccc
Q 045447 1874 EREEGELLPDVTEV 1887 (2058)
Q Consensus 1874 ~~~~~~~~~~~~~~ 1887 (2058)
+.|+|+.|.|-+++
T Consensus 1807 deee~~~d~d~de~ 1820 (1822)
T KOG4674|consen 1807 DEEEYENDLDDDED 1820 (1822)
T ss_pred chhhhhhccccCCC
Confidence 88999997765443
No 2
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=100.00 E-value=1.3e-21 Score=262.51 Aligned_cols=1382 Identities=18% Similarity=0.192 Sum_probs=664.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 045447 56 LEQKFISLQEEFSKVESQNAQLQKSLDDRVNELAEVQSQKHQLHLQLIGKDGEIERLTMEVAELHKSRRQLMELVEQKDL 135 (2058)
Q Consensus 56 lEqk~~sl~~e~~~le~e~~eL~~~l~~~~~Ela~~q~~~~~L~~~~~~~dseverLr~ei~eLe~ekr~ll~llErk~~ 135 (2058)
.|+.+..+..++..++....-+-.+..-...++..+...+.++...-......+.+++..++.|...++.+..=-...-.
T Consensus 50 ~eq~~~~~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~ 129 (1822)
T KOG4674|consen 50 HEQQLSELEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLME 129 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444455444444444444444443333444444444444444444444455666666666666666666643333344
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHhhh
Q 045447 136 QHSEKGATIKAYLDKIINLTDNAAQREARLAETEAELARAQATCTRLTQGKELIERHNAWLNEELTSKVNSLVELRRTHA 215 (2058)
Q Consensus 136 e~eel~e~l~~l~eKi~eL~~~~~~~e~rl~e~es~~~s~k~~e~RLeQE~eLLqknneWLe~ELk~KteEll~~Rre~~ 215 (2058)
.++.+...+..+..-+..|+.....+...+-++++.+....+..-+.+-..+-+.+..+.|..+.+--+.+|.++-.+..
T Consensus 130 ~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll 209 (1822)
T KOG4674|consen 130 LLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLL 209 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45555556666666666666666666666777777666666666667667777777777777777666666665555433
Q ss_pred hhHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 045447 216 DLEADMSAKLSDVERQFSECSSSLNWNKERVRELEIKLSSLQEEFCSSKDAAAANEERFSTELSTVNKLVELYKESSEEW 295 (2058)
Q Consensus 216 ~~e~~l~aki~eLqre~~E~~ssL~~sk~rv~eLe~Kl~~lqe~L~~~ke~~a~~ee~fr~EL~aq~RLaeLyke~aee~ 295 (2058)
.+..+.+-.+.+|+..+.....++......+.=|..+...+...+..+-..+-.+.+.+--....-.+=....+...+-|
T Consensus 210 ~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q~kL~eL~ 289 (1822)
T KOG4674|consen 210 SLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAESSEEKFEKELSTQKKLNELW 289 (1822)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 32222233334444444333333333333333333333333333444444555555555444444444455666677888
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhccccCCCCCccccccc
Q 045447 296 SRKAGELEGVIKALETQLAQVQNDCKEKLEKEVSAREQLEKEAMDL-KEKLEKCEAEIESSRKTNELNLLPLSSFSTETW 374 (2058)
Q Consensus 296 ~~k~~ELe~~ikeLe~~L~q~e~~~~e~LEkE~~~~~~lEke~~eL-kekl~~lE~Ele~~~~anel~~~~lsa~~~~~~ 374 (2058)
+.+..+|..-+.+|...+..++.=+ +..........+...++.+. ......++++|.+... .+
T Consensus 290 ks~~ee~~~~~~el~~~i~~~~kll-ed~~~~~~e~~d~l~e~~~sl~~~~~~~~k~~~~le~--~l------------- 353 (1822)
T KOG4674|consen 290 KSKLEELSHEVAELQRAIEELEKLL-EDASERNKENTDQLKELEQSLSKLNEKLEKKVSRLEG--EL------------- 353 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-------------
Confidence 8888888888888888777654322 22333444444433333333 3333334466654321 11
Q ss_pred ccccccCccccccccccCCCCCCCCchHHhhhhccCCCCH-HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHcc
Q 045447 375 MESFDTNNISEDNRLLVPKIPAGVSGTALAASLLRDGWSL-AKIYAKYQEAVDALRHEQLGRKESEAVLQRVLYELEEKA 453 (2058)
Q Consensus 375 ~~~~~~s~~~e~~~~~~p~~~~g~s~tAaAss~~KsG~SL-TqlYt~Yve~k~qL~~Er~en~rLq~~Ld~Iv~ELEeKA 453 (2058)
.+.+.... ..|.++ .++. +-+.+.+....-+|......+-.++..|..+..+|+..-
T Consensus 354 ---------~~an~~~~---~~~~~~----------~~s~~~a~~s~~~~~~~sLtk~ys~~~~~qqqle~~~lele~~~ 411 (1822)
T KOG4674|consen 354 ---------EDANDSLS---ATGESS----------MVSEKAALASSLIRPGSSLTKLYSKYSKLQQQLESLKLELERLQ 411 (1822)
T ss_pred ---------HhhhhhHH---hhcccc----------hhhhHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 012111 1222 566788888888999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--h
Q 045447 454 GIILDERAEYERMVDAYSAINQKLQNFISEKSSLEKTIQELKADLRMRERDYYLAQKEISDLQKQVTVLLKECRDIQ--L 531 (2058)
Q Consensus 454 P~L~eqR~EyErl~~~~~~Ls~~Leqa~~Erd~leke~r~a~~~l~~~eREn~~Lk~Ql~DLsrQV~vLL~Ev~~~q--l 531 (2058)
|+|...-.+..-.--.+..=...|+......-.+-.++......+..++++...|+.++.|+.+|++.|...|-++. +
T Consensus 412 ~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv 491 (1822)
T KOG4674|consen 412 NILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELESLKKQLNDLERENKLLEQQISDLSRQV 491 (1822)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998877765555544455555666666666677788888888899999999999999999999999999987762 2
Q ss_pred hcCCCCcccchhhhhhhcccCCCCCchhhhhhhccccccchHHHHHHhHHHHHHHHHhHHHHHHHH---HHHHHHHHHHH
Q 045447 532 RCGLSRIEFDDDAVAIADVELAPESDAEKIISEHLLTFKDINGLVEQNVQLRSLVRNLSDQIESRE---MEFKDKLELEL 608 (2058)
Q Consensus 532 r~g~~g~~~~~d~~~is~~~~~d~SdT~~vISerLVtFkdI~ELQeQNqeLL~vvReLs~klE~eE---~e~~e~le~El 608 (2058)
.++ +.--++...+ ......++. -+.-.+=.++-..+--=++-|++|-++--.-= ++..+.++...
T Consensus 492 ~~L---l~el~e~~~~--~~~~~~s~~-------~~~es~S~~iIse~Lv~F~nI~eLqekN~eLL~~vR~Lae~lE~~E 559 (1822)
T KOG4674|consen 492 NVL---LLELDELRKG--SKITVSSDS-------TENESDSEEIISERLVEFSNINELQEKNVELLNAVRELAEKLEAAE 559 (1822)
T ss_pred HHH---HHHHHHHHhh--hhcccCccc-------cccCccHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 221 1111111101 111111111 34445555666655555566666665533221 11112222222
Q ss_pred HHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHhhhc----CCCccccccCCCCchhhhHhhhccHHHHH
Q 045447 609 KKHTDEAASKVAAVLDRAEEQ-GRMIESLHTSVAMYKRLYEEEHKLH----SSHTQYIEAAPDGRKDLLLLLEGSQEATK 683 (2058)
Q Consensus 609 k~~~dEa~~~l~~l~e~~eeQ-~~miESl~keRDMyR~Ll~e~~~l~----ss~~~s~~~~~~g~~~~~~~lE~sq~~~~ 683 (2058)
+.........+......+... ......+...-+|+..|+.++.... .+..... ..+.. ..+..+....
T Consensus 560 ~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~-~k~ns-----s~~~~t~~~~- 632 (1822)
T KOG4674|consen 560 KTQDKTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYKELLAELEDSHQ-LKPNS-----SALDQTEAPR- 632 (1822)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc-CCCCc-----hhhcccccch-
Confidence 221111222221112222221 2223344556778887777655431 1111100 00100 1111111110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 045447 684 RAQEKMAERVRCLEDDLGKARS-----------EIIALRSERDKLALEAEFAREKLDSVMREAEHQKVEVNGVLARNVEF 752 (2058)
Q Consensus 684 ~a~~q~~e~~k~L~eql~k~r~-----------El~~LrsE~~K~s~q~e~a~ER~e~Lq~n~e~~r~E~~sL~~rn~eL 752 (2058)
....+++.|+..|..|+. ++.+|+.+...+..+++-.......-...++++...+..+......|
T Consensus 633 ----~~e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL 708 (1822)
T KOG4674|consen 633 ----AKEKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETL 708 (1822)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 022345666666654443 33444444444433332222222222223333333333333222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 753 SQLVVDYQRKLRETSESLNAAQELSRKLAMEVSVLKHEKEMLSNAEQRAYDEVRSLSQRVYRLQASLDTIQNAEEVREEA 832 (2058)
Q Consensus 753 s~~~~k~e~~l~~~~e~L~aaeel~~~L~~E~~nLKaEK~Llk~~E~RL~~EnesL~~e~~rLqs~L~tiQs~~e~REes 832 (2058)
-.-...+...|...-...+.+...+......+..|.+|-.- |++|+.-|..-..||...+.++.......
T Consensus 709 ~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~-------LKqE~~ll~~t~~rL~~e~~~l~~e~~~L--- 778 (1822)
T KOG4674|consen 709 EERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSN-------LKQEKLLLKETEERLSQELEKLSAEQESL--- 778 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 22111111111111111122222122222222233322222 23444444444445555555544332211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 833 RAAERRKQEEYIKQVEREWAEAKKELQEERDNV-RLLTSDREQTLKNAVKQVEEMGKELATALRAVASAETRAAVAETKL 911 (2058)
Q Consensus 833 es~~Rrrle~~Ie~LE~Els~lKkrL~eE~e~~-r~L~~~re~~~~e~qkrid~l~~El~~~~eal~~aetr~~vle~rv 911 (2058)
...--.++..+..++...+.++.+++...+.. +.|+.-+ ..++..++++..--...-..+.. +..+|
T Consensus 779 -~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk----~klq~~~~~~r~l~~~~~~~l~~-------~~~~i 846 (1822)
T KOG4674|consen 779 -QLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLK----KKLQEKSSDLRELTNSLEKQLEN-------AQNLV 846 (1822)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhHHHH-------HHHHH
Confidence 00112345566667777777777766443221 1111111 11111111110000000001111 22222
Q ss_pred HHHHhhcccccCCccccCCCCCCchhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 045447 912 SDMEKRIRPLDAKGDEVDDGSRPSDEVQLQVGKEELEKLKEEAQANREHMLQYKSIAQVNEAALKEMETVHENFRTRVEG 991 (2058)
Q Consensus 912 ~~Le~kL~~~~~k~~s~~~~~~~s~E~eL~~lk~ELe~lkeeL~~Ak~qveQYK~IAqsaEeaL~~l~~~~e~yK~e~E~ 991 (2058)
..+...+.+...-+.+... .....++++..|...|...+.++..--+- .|..-+--.+..|......++..+..+..
T Consensus 847 ~~~~~~~~~~~~~l~~~~~-~~~~le~k~~eL~k~l~~~~~~~~~l~~~--~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~ 923 (1822)
T KOG4674|consen 847 DELESELKSLLTSLDSVST-NIAKLEIKLSELEKRLKSAKTQLLNLDSK--SSNEDATILEDTLRKELEEITDLKEELTD 923 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHhhcccc--chhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 2222222221000000000 00001233444444444333322211100 00000111111122211111111111111
Q ss_pred H---HHhHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q 045447 992 V---KKSLEDELHSLRKRVSELERENIL-------KSEEIASAAGVREDALASAREEITSLKEERSIK----ISQIVNLE 1057 (2058)
Q Consensus 992 ~---l~e~e~ei~~L~~ri~eLe~El~~-------~~eE~~~~~~~~e~ql~~l~~El~~Lk~E~~~~----~~~~~~~E 1057 (2058)
. +..+.+.+..+.+-+..+...+.. ..+.........+..+..+..++..|.++.... ..+...+-
T Consensus 924 a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~ 1003 (1822)
T KOG4674|consen 924 ALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLS 1003 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 1 111111111111111111111111 111112222223333334444444444433321 23344555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---H------hHHHHHHhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1058 VQVSALKEDLEKEHERRQAAQ---A------NYERQVILQS-----ETIQELTKTSQALASLQEQASELRKLADALKAEN 1123 (2058)
Q Consensus 1058 ~q~~~l~~DL~~Q~~~a~eAQ---~------nYErElvLHA-----e~IqeL~k~~e~~~~lq~e~~elr~~aesak~~L 1123 (2058)
.++..+++++..-..+...|- . .|+.+.+.-+ ..|..+....+.+..++.++..+...+...+...
T Consensus 1004 ~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~ 1083 (1822)
T KOG4674|consen 1004 REISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSR 1083 (1822)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 667777777665444332222 2 3333322222 3333334444445555556666666665555555
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCC-CCCCCCchhHHHHHHHHh
Q 045447 1124 SELKSKWELEKSVLEKLKNEAEEKYDEVNEQNKILHSRLEALHIQLTEKDGSSVRISSQST-DSNPIGDASLQSVISFLR 1202 (2058)
Q Consensus 1124 ~e~e~SWeeqk~~Le~Ei~el~~R~eDL~~QN~LLH~QLE~lt~Qia~~~~~~a~~ss~s~-~~~s~~~e~L~eVI~yLR 1202 (2058)
.....-..+...-...+-..+..-+..++.++--||.|.-.++.||..+.. .+. .+++.+.+|+-.+.+.++
T Consensus 1084 ~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~-------~~~~~n~S~~~~g~sdL~~iv~ 1156 (1822)
T KOG4674|consen 1084 ESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQ-------QSAVSNLSAMLLGLSDLQNIVS 1156 (1822)
T ss_pred HHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhhhccccccccchHHHHHHHH
Confidence 555555555556666677778888889999999999999999999876532 233 256777788777776654
Q ss_pred hhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhh----hcHHHHHHHHHHHHHHHHHHHhhH
Q 045447 1203 NRKSIAETEVALLTTEKLRLQKQLESALKAAENAQAS---LTTERANSRAML----LTEEEIKSLKLQVRELNLLRESNV 1275 (2058)
Q Consensus 1203 REKEIae~qlel~~qE~~RLqqQle~~qkqLdEar~~---L~~Ere~s~t~~----~s~e~hkeLmeKleqLNlLRESN~ 1275 (2058)
.+..|.-++--+++.+.....-.+.. ++..++..+.++ .+...|...+.+...+--..+-=.
T Consensus 1157 -----------~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vN 1225 (1822)
T KOG4674|consen 1157 -----------FLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVN 1225 (1822)
T ss_pred -----------HHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHH
Confidence 35666666666666555444333222 222233333222 122224444555444333333334
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Q 045447 1276 QLREENKYNFEECQKLREVAQKTKSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRL 1355 (2058)
Q Consensus 1276 tLReE~~~~~~k~qkL~e~lqk~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~L 1355 (2058)
.||+-|..+.+......+.++.++.++..|+..|.+++..+..+..+++....+..-++.=+..-..+|
T Consensus 1226 ll~EsN~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~----------- 1294 (1822)
T KOG4674|consen 1226 LLRESNKVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRN----------- 1294 (1822)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 678888777777777777778888888888888888888888888888888887766655433333322
Q ss_pred HHHHHHH-----HHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHH----HHH
Q 045447 1356 KVEVRQM-----EEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEME----KQK 1426 (2058)
Q Consensus 1356 k~Eie~L-----e~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e----~~~ 1426 (2058)
..|..- ...++.+..++.+++..+..++..++.+..++...+ .....+++++..+..++..++. ...
T Consensus 1295 -q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q---~~~k~qld~l~~e~~~lt~~~~ql~~~~~ 1370 (1822)
T KOG4674|consen 1295 -QDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIAELKKELNRLQ---EKIKKQLDELNNEKANLTKELEQLEDLKT 1370 (1822)
T ss_pred -HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 224455555666667777777777777777777766 3444555555555555555554 445
Q ss_pred HHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHhccc-ccCCCcchhHHHHhhh--hhhhHHH
Q 045447 1427 RISAQLRRKCEML----------------SKEKEESIKENQSLARQLDDLKQGK-KSTGDVTGEQVMKEKE--EKDTRIQ 1487 (2058)
Q Consensus 1427 ~~~~~~k~~~e~~----------------~~e~~e~~~e~~~l~~q~~~~k~~~-~~~~~~~~~q~~ke~~--~~~~~~~ 1487 (2058)
+.++.|-..+.+. ...+.+..+++-.+..+++.++-.. .......+.|+.-+++ +....-+
T Consensus 1371 rL~~~~~e~~~q~~el~~~~~~~~~~~e~t~rk~e~~~~k~~~~~e~~sl~eeL~e~~q~~~~~~s~~e~i~~e~~~~~k 1450 (1822)
T KOG4674|consen 1371 RLAAALSEKNAQELELSDKKKAHELMQEDTSRKLEKLKEKLELSEELESLKEELEELQQLQATLQSETEAITKELFEAKK 1450 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHH
Confidence 5566666555541 0111111122222223333333111 0101112222222222 1122222
Q ss_pred HHHH-HHHHHHHHHHHhhhhhHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 045447 1488 ILER-TVERQREELKKEKDDNQKE-KEKRLKGEKVMLDSAKLADQWKTRISSELEQHKQAVKRLSDELEKLKHTEAGLPE 1565 (2058)
Q Consensus 1488 ~~~~-~~e~~~~~~~~e~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~el~~~~~~~~~~~~ 1565 (2058)
..++ +.++......+.++..+.. ...+ .-+.+++.+++.+.+..+...+.+..+..|.-++.. ++|.
T Consensus 1451 ~~~~~~~e~~~~~i~~~~e~~~~~~~~~~--------~~~~~le~~k~e~~~e~e~~~~~~~~~~~E~lk~r~---Rl~~ 1519 (1822)
T KOG4674|consen 1451 EEEKSTTERLLEEIKKLLETVRKKTVDAD--------SKSENLEGTKKELESEKEELKQRLTELAAENLKLRS---RLAK 1519 (1822)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh---hcch
Confidence 2222 2222222222222221111 1111 123789999999999999999999999999999988 8887
Q ss_pred Cc
Q 045447 1566 GT 1567 (2058)
Q Consensus 1566 ~~ 1567 (2058)
..
T Consensus 1520 ee 1521 (1822)
T KOG4674|consen 1520 EE 1521 (1822)
T ss_pred hH
Confidence 65
No 3
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.91 E-value=1.1e-11 Score=171.70 Aligned_cols=153 Identities=22% Similarity=0.246 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCCCCCchhHHHHHHHHhhhhhHHHH
Q 045447 1131 ELEKSVLEKLKNEAEEKYDEVNEQNKILHSRLEALHIQLTEKDGSSVRISSQSTDSNPIGDASLQSVISFLRNRKSIAET 1210 (2058)
Q Consensus 1131 eeqk~~Le~Ei~el~~R~eDL~~QN~LLH~QLE~lt~Qia~~~~~~a~~ss~s~~~~s~~~e~L~eVI~yLRREKEIae~ 1210 (2058)
+..-..|+-.++.++++..|+.+|++-++.|+..+..++...+ .+.+++++.+. +++-
T Consensus 1610 e~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~---------------~~~~e~~~q~~-------~aer 1667 (1930)
T KOG0161|consen 1610 EGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQ---------------RAREELLEQLA-------EAER 1667 (1930)
T ss_pred hcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHH---------------HHHHHHHHHHH-------HHHH
Confidence 3333444444444455555555555555555554443332111 12244554443 4566
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHH
Q 045447 1211 EVALLTTEKLRLQKQLESALKAAENAQASLTTERANSRAMLLTEEEIKSLKLQVRELNLLRESNVQLREENKYNFEECQK 1290 (2058)
Q Consensus 1211 qlel~~qE~~RLqqQle~~qkqLdEar~~L~~Ere~s~t~~~s~e~hkeLmeKleqLNlLRESN~tLReE~~~~~~k~qk 1290 (2058)
++..+..|...|+..++.+.+ ++-.+.. ++.+-.+.+|.++-+|..|=.+..++..++..
T Consensus 1668 r~~~l~~E~eeL~~~l~~~~R----arr~aE~----------------e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~ 1727 (1930)
T KOG0161|consen 1668 RLAALQAELEELREKLEALER----ARRQAEL----------------ELEELAERVNELNAQNSSLTAEKRKLEAEIAQ 1727 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhhHH----------------HHHHHHHHHHHHhhcccchhhHHHHHHHHHHH
Confidence 777777777777776553322 1111111 12233677778888888888888777777777
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 045447 1291 LREVAQKTKSDCDNLENLLRERQIEIEACKKEMEK 1325 (2058)
Q Consensus 1291 L~e~lqk~~~elepLe~~i~el~~elE~~~~Ei~~ 1325 (2058)
+++.++....+......+++-.+....-+..++..
T Consensus 1728 l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~ 1762 (1930)
T KOG0161|consen 1728 LQSELEEEQSELRAAEERAKKAQADAAKLAEELRK 1762 (1930)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHH
Confidence 77776665555555666666665555555555443
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.91 E-value=1.2e-11 Score=171.26 Aligned_cols=184 Identities=26% Similarity=0.285 Sum_probs=107.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCcccc
Q 045447 292 SEEWSRKAGELEGVIKALETQLAQVQNDCKEKLEKEVSAREQLEKEAMDLKEKLEKCEAEIESSRKTNELNLLPLSSFST 371 (2058)
Q Consensus 292 aee~~~k~~ELe~~ikeLe~~L~q~e~~~~e~LEkE~~~~~~lEke~~eLkekl~~lE~Ele~~~~anel~~~~lsa~~~ 371 (2058)
.++...-+..|+..|++|+.++..+. +.++.++..+..+++...+|...++.+..+|+..-
T Consensus 1085 ~e~e~~~~~~l~k~i~eL~~~i~el~----e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~--------------- 1145 (1930)
T KOG0161|consen 1085 LEDEQAEVAQLQKQIKELEARIKELE----EELEAERASRAKAERQRRDLSEELEELKEELEEQG--------------- 1145 (1930)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------
Confidence 34555555666666677777766544 45667778888888888899999998888876530
Q ss_pred cccccccccCccccccccccCCCCCCCCchHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhhhhHHHHHH----HHHHH
Q 045447 372 ETWMESFDTNNISEDNRLLVPKIPAGVSGTALAASLLRDGWSLAKIYAKYQEAVDALRHEQLGRKESEAVL----QRVLY 447 (2058)
Q Consensus 372 ~~~~~~~~~s~~~e~~~~~~p~~~~g~s~tAaAss~~KsG~SLTqlYt~Yve~k~qL~~Er~en~rLq~~L----d~Iv~ 447 (2058)
|+... ..+ .. ..-+.++.+++..|..+....+..-..| ...|.
T Consensus 1146 ~~t~~------q~e-------------------~~--------~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~ 1192 (1930)
T KOG0161|consen 1146 GTTAA------QLE-------------------LN--------KKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLA 1192 (1930)
T ss_pred hhHHH------HHH-------------------HH--------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 00000 000 00 1126777777777766555544333322 44455
Q ss_pred HHHHcccchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 045447 448 ELEEKAGIILD----ERAEYERMVDAYSAINQKLQNFISEKSSLEKTIQELKADLRMRERDYYLAQKEISDLQKQVTVLL 523 (2058)
Q Consensus 448 ELEeKAP~L~e----qR~EyErl~~~~~~Ls~~Leqa~~Erd~leke~r~a~~~l~~~eREn~~Lk~Ql~DLsrQV~vLL 523 (2058)
+|....--+++ .--++..+...+..|...+.+....+..+.+-.+.+...+..++.....+..++.||+.|...|-
T Consensus 1193 el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~ 1272 (1930)
T KOG0161|consen 1193 ELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQ 1272 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55554444442 22234455666666666666666666666666666666666666666666666666666666665
Q ss_pred HHHH
Q 045447 524 KECR 527 (2058)
Q Consensus 524 ~Ev~ 527 (2058)
.|+.
T Consensus 1273 ~E~~ 1276 (1930)
T KOG0161|consen 1273 NENE 1276 (1930)
T ss_pred hhHH
Confidence 5543
No 5
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=99.89 E-value=2e-22 Score=213.65 Aligned_cols=130 Identities=38% Similarity=0.546 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1037 EEITSLKEERSIKISQIVNLEVQVSALKEDLEKEHERRQAAQANYERQVILQSETIQELTKTSQALASLQEQASELRKLA 1116 (2058)
Q Consensus 1037 ~El~~Lk~E~~~~~~~~~~~E~q~~~l~~DL~~Q~~~a~eAQ~nYErElvLHAe~IqeL~k~~e~~~~lq~e~~elr~~a 1116 (2058)
.++..|+.+...+...+..++.++..++.||+.|+.+|+.||+||++|||+||++|+.|..++.++..++.++..++..+
T Consensus 3 ~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~ 82 (132)
T PF07926_consen 3 SELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEA 82 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777778888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1117 DALKAENSELKSKWELEKSVLEKLKNEAEEKYDEVNEQNKILHSRLEALH 1166 (2058)
Q Consensus 1117 esak~~L~e~e~SWeeqk~~Le~Ei~el~~R~eDL~~QN~LLH~QLE~lt 1166 (2058)
++++..|..++.||++++..|++++++++.||+||+.||+|||+|||+++
T Consensus 83 ~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ls 132 (132)
T PF07926_consen 83 ESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESLS 132 (132)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999874
No 6
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.69 E-value=1.8e-07 Score=132.17 Aligned_cols=155 Identities=13% Similarity=0.170 Sum_probs=87.0
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhH
Q 045447 939 QLQVGKEELEKLKEEAQANREHMLQYKSIAQVNEAALKEMETVHENFRTRVEGVKKSLEDELHSLRKRVSELERENILKS 1018 (2058)
Q Consensus 939 eL~~lk~ELe~lkeeL~~Ak~qveQYK~IAqsaEeaL~~l~~~~e~yK~e~E~~l~e~e~ei~~L~~ri~eLe~El~~~~ 1018 (2058)
+|..+..++..+...+....+.+.....--......|.++...-..++..+.... +..++..++..|..|..++....
T Consensus 971 qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~--~~~~l~el~~eI~~l~~~~~~~~ 1048 (1311)
T TIGR00606 971 YLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRK--RENELKEVEEELKQHLKEMGQMQ 1048 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhcc
Confidence 3555555555554444444444444444333444555555544444444443332 35555666666666665554321
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH---HHHHHH
Q 045447 1019 EEIASAAGVREDALASAREEITSLKEERSIKISQIVNLEVQVSALKEDLEKEHERRQAAQANYERQVILQS---ETIQEL 1095 (2058)
Q Consensus 1019 eE~~~~~~~~e~ql~~l~~El~~Lk~E~~~~~~~~~~~E~q~~~l~~DL~~Q~~~a~eAQ~nYErElvLHA---e~IqeL 1095 (2058)
...+......+..++..|..........+..++.++..++.+|.. ..+..|..+|-..|+.-- -.+.-|
T Consensus 1049 ------~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e--~~yk~a~~ryrka~i~~~~~~~~~~d~ 1120 (1311)
T TIGR00606 1049 ------VLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE--PQFRDAEEKYREMMIVMRTTELVNKDL 1120 (1311)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123444555566666666666666667777788889999999865 567788999987655432 333444
Q ss_pred HHHHHHHH
Q 045447 1096 TKTSQALA 1103 (2058)
Q Consensus 1096 ~k~~e~~~ 1103 (2058)
.+...++.
T Consensus 1121 ~~~~~~~~ 1128 (1311)
T TIGR00606 1121 DIYYKTLD 1128 (1311)
T ss_pred HHHHHHHH
Confidence 44444433
No 7
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.67 E-value=3e-07 Score=129.94 Aligned_cols=83 Identities=16% Similarity=0.188 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 419 AKYQEAVDALRHEQLGRKESEAVLQRVLYELEEKAGIILDERAEYERMVDAYSAINQKLQNFISEKSSLEKTIQELKADL 498 (2058)
Q Consensus 419 t~Yve~k~qL~~Er~en~rLq~~Ld~Iv~ELEeKAP~L~eqR~EyErl~~~~~~Ls~~Leqa~~Erd~leke~r~a~~~l 498 (2058)
+.|.++.+.+.. +...+..-|..++.....+...+.....+...+..+..+++..-.+...+...+..+...+
T Consensus 182 ~~y~k~~~~~~~-------~~k~~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~q~kie~~~~~~~~le~ei~~l~~~~ 254 (1311)
T TIGR00606 182 TRYIKALETLRQ-------VRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRL 254 (1311)
T ss_pred hHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666655544 2333444444455555555555666666666666666666666666666666666666555
Q ss_pred HHHHHHHHHH
Q 045447 499 RMRERDYYLA 508 (2058)
Q Consensus 499 ~~~eREn~~L 508 (2058)
..+...+..+
T Consensus 255 ~~l~~~~~~~ 264 (1311)
T TIGR00606 255 KEIEHNLSKI 264 (1311)
T ss_pred HHHHHHHHHH
Confidence 5554444444
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.54 E-value=3e-06 Score=118.54 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=9.3
Q ss_pred hhHHHHHHHHhhhh
Q 045447 1192 ASLQSVISFLRNRK 1205 (2058)
Q Consensus 1192 e~L~eVI~yLRREK 1205 (2058)
+....+|.||++.+
T Consensus 558 ~~a~~~i~~l~~~~ 571 (1164)
T TIGR02169 558 AVAKEAIELLKRRK 571 (1164)
T ss_pred HHHHHHHHHHHhcC
Confidence 44677777777554
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.46 E-value=9.9e-06 Score=113.25 Aligned_cols=33 Identities=27% Similarity=0.278 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1136 VLEKLKNEAEEKYDEVNEQNKILHSRLEALHIQ 1168 (2058)
Q Consensus 1136 ~Le~Ei~el~~R~eDL~~QN~LLH~QLE~lt~Q 1168 (2058)
.+..++..++..++++..+=.-++.++..+..+
T Consensus 674 ~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~ 706 (1179)
T TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKE 706 (1179)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544455555444433
No 10
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.46 E-value=4.3e-06 Score=110.56 Aligned_cols=251 Identities=19% Similarity=0.230 Sum_probs=138.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 989 VEGVKKSLEDELHSLRKRVSELERENILKSEEIASAAG---VREDALASAREEITSLKEERSIKISQIVNLEVQVSALKE 1065 (2058)
Q Consensus 989 ~E~~l~e~e~ei~~L~~ri~eLe~El~~~~eE~~~~~~---~~e~ql~~l~~El~~Lk~E~~~~~~~~~~~E~q~~~l~~ 1065 (2058)
+...+..++.+|..|+.-|.+|+.|+............ ....++.........+|.........+..-.+++..++.
T Consensus 229 lq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt 308 (775)
T PF10174_consen 229 LQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQT 308 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888888888888888887766542211111 111122222222222222222222222222222333333
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHH
Q 045447 1066 DLEKEHERRQAAQANYERQVILQSETI-QELTKTSQALASLQEQASELRKLADALKAENSELKSKW---ELEKSVLEKLK 1141 (2058)
Q Consensus 1066 DL~~Q~~~a~eAQ~nYErElvLHAe~I-qeL~k~~e~~~~lq~e~~elr~~aesak~~L~e~e~SW---eeqk~~Le~Ei 1141 (2058)
.|..-.......+.-|+ -+ ..|+...+.+..||.++..|+...+.+...+.....+. .+.+..+..+|
T Consensus 309 ~l~~~~~~~~d~r~hi~--------~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei 380 (775)
T PF10174_consen 309 RLETLEEQDSDMRQHIE--------VLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEI 380 (775)
T ss_pred HHHHHHhhHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322222222233333 22 24555555667788888888888888777776665443 46777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc----cccCCCCCCCCCCchh-----------HHHHHHHHhhhhh
Q 045447 1142 NEAEEKYDEVNEQNKILHSRLEALHIQLTEKDGSSV----RISSQSTDSNPIGDAS-----------LQSVISFLRNRKS 1206 (2058)
Q Consensus 1142 ~el~~R~eDL~~QN~LLH~QLE~lt~Qia~~~~~~a----~~ss~s~~~~s~~~e~-----------L~eVI~yLRREKE 1206 (2058)
.++...++-...-...|+..||++..++....+.-. -..+ .+++...++ .-.++.-|+..++
T Consensus 381 ~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~---~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~ 457 (775)
T PF10174_consen 381 EDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSS---QADSSNEDEALETLEEALREKERLQERLEEQRE 457 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888877764432100 0000 111111122 2222222222222
Q ss_pred HHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 045447 1207 IAE----TEVALLTTEKLRLQKQLESALKAAENAQASLTTERANSRAM 1250 (2058)
Q Consensus 1207 Iae----~qlel~~qE~~RLqqQle~~qkqLdEar~~L~~Ere~s~t~ 1250 (2058)
-++ -.++..+.|...|+..++.+++.|.+....|..-++.+...
T Consensus 458 ~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l 505 (775)
T PF10174_consen 458 RAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKL 505 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHH
Confidence 222 45677888999999999999999999998887665554433
No 11
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.39 E-value=2.8e-05 Score=109.18 Aligned_cols=58 Identities=14% Similarity=0.265 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcceeeccCccchhhhhhHHHHHHHHHHHhh
Q 045447 1522 LDSAKLADQWKTRISSELEQHKQAVKRLSDELEKLKHTEAGLPEGTSVVQLLSGTNLDDHASSYFSAVESFERVA 1596 (2058)
Q Consensus 1522 ~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1596 (2058)
++-|..+......+..+++.+.++++.|.+-+.++..- ..+.|-.+|...-++|-++-
T Consensus 969 iee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~-----------------~~~~f~~~f~~In~~F~~if 1026 (1163)
T COG1196 969 IEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKE-----------------KRERFKETFDKINENFSEIF 1026 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH
Confidence 33467777777777788888888888887777777661 23455556655566666553
No 12
>PRK03918 chromosome segregation protein; Provisional
Probab=99.38 E-value=1.6e-05 Score=108.69 Aligned_cols=243 Identities=23% Similarity=0.340 Sum_probs=116.7
Q ss_pred CchhHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHHHHHHH
Q 045447 1190 GDASLQSVISFLRNRKSIAETEVALLTTEKLRLQKQLESALKAAENAQASLTTERANSRAMLLTEEEIKSLKLQVRELNL 1269 (2058)
Q Consensus 1190 ~~e~L~eVI~yLRREKEIae~qlel~~qE~~RLqqQle~~qkqLdEar~~L~~Ere~s~t~~~s~e~hkeLmeKleqLNl 1269 (2058)
+.+.-.+|+..++.+.+-..-++..+..+...+...+......+ .....|. ... ....++..|..+++.++
T Consensus 446 ~~~~~~el~~~~~~ei~~l~~~~~~l~~~~~~l~~~~~~~~~~~-~~~~~l~----~l~---~~~~~~~~l~~~l~~~~- 516 (880)
T PRK03918 446 TEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVL-KKESELI----KLK---ELAEQLKELEEKLKKYN- 516 (880)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhHH----HHH---HHHHHHHHHHHHHhhcc-
Confidence 44556777778887777777777777777666666655432211 1111111 111 12245667777777776
Q ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCH
Q 045447 1270 LRESNVQLREENKYNFEECQKLREVAQKTKSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDV 1349 (2058)
Q Consensus 1270 LRESN~tLReE~~~~~~k~qkL~e~lqk~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDP 1349 (2058)
+.+ |.+.... ...+...+..+...+..|+..+... ..+...+..+..+...-..|...|..+-..+++
T Consensus 517 ~~~----l~~~~~~----~~~l~~~~~~l~~~l~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 584 (880)
T PRK03918 517 LEE----LEKKAEE----YEKLKEKLIKLKGEIKSLKKELEKL----EELKKKLAELEKKLDELEEELAELLKELEELGF 584 (880)
T ss_pred HHH----HHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 211 2222221 1122222222222333444333322 223344444555566666677777777777777
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHH---
Q 045447 1350 EDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQK--- 1426 (2058)
Q Consensus 1350 eE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~--- 1426 (2058)
.+|..+..++..|+.....- .++......+......+..++..+......+..+..++..+ +.+++.+.
T Consensus 585 ~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~i~~l~~~i~~l-------~~~~~~l~~~~ 656 (880)
T PRK03918 585 ESVEELEERLKELEPFYNEY-LELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEEL-------RKELEELEKKY 656 (880)
T ss_pred chHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhc
Confidence 78888888888886431111 12221222222333333344444444444444444444444 44444443
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045447 1427 --RISAQLRRKCEMLSKEKEESIKENQSLARQLDDLK 1461 (2058)
Q Consensus 1427 --~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k 1461 (2058)
.....++.+++.+..++.++..++..+.+++..++
T Consensus 657 ~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~ 693 (880)
T PRK03918 657 SEEEYEELREEYLELSRELAGLRAELEELEKRREEIK 693 (880)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444443
No 13
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.37 E-value=3.4e-05 Score=107.94 Aligned_cols=22 Identities=9% Similarity=0.173 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHhhhhhhhhc
Q 045447 1582 ASSYFSAVESFERVARSVIVEL 1603 (2058)
Q Consensus 1582 ~~~~~~~~~~~~~~~~~~~~~~ 1603 (2058)
..+|....++|-+.-..+|..+
T Consensus 1031 ~~~F~~v~~~f~~~F~~lf~~~ 1052 (1179)
T TIGR02168 1031 RERFKDTFDQVNENFQRVFPKL 1052 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777765
No 14
>PRK02224 chromosome segregation protein; Provisional
Probab=99.35 E-value=1.8e-05 Score=108.40 Aligned_cols=70 Identities=16% Similarity=0.162 Sum_probs=39.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHH
Q 045447 1301 DCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEI 1373 (2058)
Q Consensus 1301 elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~ 1373 (2058)
++..+++.+.+++..+..+......++++..-.+.|...|-..| |++.++.|..+++.+...+......+
T Consensus 600 ~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~~~~---~~~~~e~l~~~~~~~~~~~~~l~~~l 669 (880)
T PRK02224 600 AIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEF---DEARIEEAREDKERAEEYLEQVEEKL 669 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555556666666666666655444 56666666666666655444443333
No 15
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.35 E-value=4.5e-05 Score=106.97 Aligned_cols=11 Identities=9% Similarity=0.157 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 045447 1521 MLDSAKLADQW 1531 (2058)
Q Consensus 1521 ~~~~~~~~~~~ 1531 (2058)
+.+.|..++..
T Consensus 1005 l~~~i~~l~~~ 1015 (1164)
T TIGR02169 1005 ILERIEEYEKK 1015 (1164)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 16
>PRK02224 chromosome segregation protein; Provisional
Probab=99.32 E-value=9.3e-06 Score=111.14 Aligned_cols=102 Identities=16% Similarity=0.203 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 045447 1349 VEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQKRI 1428 (2058)
Q Consensus 1349 PeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~~~ 1428 (2058)
.+.++.|+.++..|...+.....+.+.+...+.+....+..+..+++.+..++..++ .+.++..+...+..+++.++..
T Consensus 536 ~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le-~~~~~~~~i~~~~~~~~~~~~~ 614 (880)
T PRK02224 536 RERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREK 614 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666555555555555555655666667777777777666666 4666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1429 SAQLRRKCEMLSKEKEESIKENQ 1451 (2058)
Q Consensus 1429 ~~~~k~~~e~~~~e~~e~~~e~~ 1451 (2058)
+..|+...+.+..++.++..++.
T Consensus 615 ~~~l~~~~~~~~~~l~~~r~~i~ 637 (880)
T PRK02224 615 REALAELNDERRERLAEKRERKR 637 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666444444443333333333
No 17
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.30 E-value=4.3e-05 Score=101.43 Aligned_cols=370 Identities=17% Similarity=0.218 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHH-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 045447 440 AVLQRVLYELEE-KAGIILDERAEYERMVDAYSAINQKLQNFISEKSSLEKTIQELKADLRMRERDYYLAQKEISDLQKQ 518 (2058)
Q Consensus 440 ~~Ld~Iv~ELEe-KAP~L~eqR~EyErl~~~~~~Ls~~Leqa~~Erd~leke~r~a~~~l~~~eREn~~Lk~Ql~DLsrQ 518 (2058)
..|...+.+|.. -.|+++..|.--+.....+..+-.+|.....+...+..++..+...+ ..++++.+|..++.+-+-
T Consensus 24 ~~l~~~~~~i~~fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~- 101 (775)
T PF10174_consen 24 SKLGSSMNSIKTFWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQY- 101 (775)
T ss_pred hHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhccc-
Confidence 344444555544 35888877776666666666777777777777777777777777777 666666666533221110
Q ss_pred HHHHHHHHHHHHhhcCCCCcccchhhhhhhcccCCCCCchhhhhhhccccccchHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 045447 519 VTVLLKECRDIQLRCGLSRIEFDDDAVAIADVELAPESDAEKIISEHLLTFKDINGLVEQNVQLRSLVRNLSDQIESREM 598 (2058)
Q Consensus 519 V~vLL~Ev~~~qlr~g~~g~~~~~d~~~is~~~~~d~SdT~~vISerLVtFkdI~ELQeQNqeLL~vvReLs~klE~eE~ 598 (2058)
..+.+..-| -+-.++..||.-+..+-.=+..|.+.+|.-+.
T Consensus 102 ----------------e~e~l~~ld-----------------------~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~ 142 (775)
T PF10174_consen 102 ----------------EFESLQELD-----------------------KAQEQFERLQAERERLQRELERLRKTLEELQL 142 (775)
T ss_pred ----------------ccchhhhhh-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000 02234555666666666666666666665543
Q ss_pred HH------HHHHHHHHHHhHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCC
Q 045447 599 EF------KDKLELELKKHTDEA----------------ASKVAAVLDRAEEQGRMIESLHTSVAMYKRLYEEEHKLHSS 656 (2058)
Q Consensus 599 e~------~e~le~Elk~~~dEa----------------~~~l~~l~e~~eeQ~~miESl~keRDMyR~Ll~e~~~l~ss 656 (2058)
.. ......++.++.+.+ ...+........+....++-.-++..|||.-++... ...
T Consensus 143 ~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~--~~~ 220 (775)
T PF10174_consen 143 RIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEHMEAREQLHRRL--QME 220 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh--hcC
Confidence 21 111222222222211 111111111111212222222233333333333221 000
Q ss_pred CccccccCCCCchhhhHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 045447 657 HTQYIEAAPDGRKDLLLLLEGSQEATKRAQEKMAERVRCLEDDLGKARSEIIALRSERDK-------LALEAEFAREKLD 729 (2058)
Q Consensus 657 ~~~s~~~~~~g~~~~~~~lE~sq~~~~~a~~q~~e~~k~L~eql~k~r~El~~LrsE~~K-------~s~q~e~a~ER~e 729 (2058)
. .+.+...+...|+.-. .....+...++.|+.++..++..+......++. -.+...|...||+
T Consensus 221 ----~--~~a~t~alq~~ie~Kd----~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d 290 (775)
T PF10174_consen 221 ----R--DDAETEALQTVIEEKD----TKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMD 290 (775)
T ss_pred ----C--CchhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHH
Confidence 0 0011111222222100 011112233555666666665433211111111 1222345555666
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 045447 730 SVMREAEHQKVEVNGVLARNVEFSQLVVDYQRKLRETSESLNAAQELSRKLAMEVSVLKHEKEMLSNAEQRAYDEVRSLS 809 (2058)
Q Consensus 730 ~Lq~n~e~~r~E~~sL~~rn~eLs~~~~k~e~~l~~~~e~L~aaeel~~~L~~E~~nLKaEK~Llk~~E~RL~~EnesL~ 809 (2058)
.+.-.+..-..|+..++.+...+.....++...+.-+-++|.+.+.....|..++.-|+.+-+=-...=.....-+..+.
T Consensus 291 ~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~q 370 (775)
T PF10174_consen 291 RLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQ 370 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66556666566666666666555555445544455555555555555555555555555443211111112223334455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 045447 810 QRVYRLQASLDTIQNAEEVREEARAAERRKQEEYIKQVEREWAEAKKELQEERDNVR 866 (2058)
Q Consensus 810 ~e~~rLqs~L~tiQs~~e~REeses~~Rrrle~~Ie~LE~Els~lKkrL~eE~e~~r 866 (2058)
.+++++.+.+..+..+.+.-+.- -+.++.+|+.|+..+..=-++|....++..
T Consensus 371 eE~~~~~~Ei~~l~d~~d~~e~k----i~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~ 423 (775)
T PF10174_consen 371 EEKSRLQGEIEDLRDMLDKKERK----INVLQKKIENLEEQLREKDRQLDEEKERLS 423 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666666665555432211 134566677776555544444554444443
No 18
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.11 E-value=0.00056 Score=96.49 Aligned_cols=86 Identities=16% Similarity=0.270 Sum_probs=44.1
Q ss_pred hhhhHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 433 LGRKESEAVLQRVLYELEEKAGIILDERAEYERMVDAYSAINQKLQNFISEKSSLEKTIQELKADLRMRERDYYLAQKEI 512 (2058)
Q Consensus 433 ~en~rLq~~Ld~Iv~ELEeKAP~L~eqR~EyErl~~~~~~Ls~~Leqa~~Erd~leke~r~a~~~l~~~eREn~~Lk~Ql 512 (2058)
.+..++...+..+..++..--|.+...+.+++.....+..+...++.+......+...+..++........+.+.++..+
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 490 (1163)
T COG1196 411 ERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARL 490 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555554444444455555555555555555555555555555555555555555555555555544
Q ss_pred hHHHHH
Q 045447 513 SDLQKQ 518 (2058)
Q Consensus 513 ~DLsrQ 518 (2058)
.-|..+
T Consensus 491 ~~l~~~ 496 (1163)
T COG1196 491 DRLEAE 496 (1163)
T ss_pred HHHHHH
Confidence 444443
No 19
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.08 E-value=2.4e-11 Score=162.99 Aligned_cols=114 Identities=16% Similarity=0.252 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHccc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 412 WSLAKIYAKYQEAVDALRHEQLGRKESEAVLQRVLYELEEKAG---IILDERAEYERMVDAYSAINQKLQNFISEKSSLE 488 (2058)
Q Consensus 412 ~SLTqlYt~Yve~k~qL~~Er~en~rLq~~Ld~Iv~ELEeKAP---~L~eqR~EyErl~~~~~~Ls~~Leqa~~Erd~le 488 (2058)
..|++++..|..+......=.+.+.+|+..|+.+..+|+.--- .+...+. .+-..+......++.+..+++.++
T Consensus 328 ~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr---~fDk~l~e~k~~~~~~~~e~d~~q 404 (859)
T PF01576_consen 328 RKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQR---KFDKQLAEWKAKVEELQAERDAAQ 404 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555544444443344455566666666655554221 1211111 122233334444555556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 045447 489 KTIQELKADLRMRERDYYLAQKEISDLQKQVTVLLKECRD 528 (2058)
Q Consensus 489 ke~r~a~~~l~~~eREn~~Lk~Ql~DLsrQV~vLL~Ev~~ 528 (2058)
++++.+...+-.+.+++.-+.-++..|.+.++.|-.|+.+
T Consensus 405 ~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~d 444 (859)
T PF01576_consen 405 REARELETELFKLKNELEELQEQLEELERENKQLQDELED 444 (859)
T ss_dssp ----------------------------------------
T ss_pred HHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6666666666666666666666666666666666555544
No 20
>PRK03918 chromosome segregation protein; Provisional
Probab=99.07 E-value=0.00058 Score=93.78 Aligned_cols=42 Identities=26% Similarity=0.293 Sum_probs=21.6
Q ss_pred hHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 045447 1193 SLQSVISFLRNRKSIAETEVALLTTEKLRLQKQLESALKAAE 1234 (2058)
Q Consensus 1193 ~L~eVI~yLRREKEIae~qlel~~qE~~RLqqQle~~qkqLd 1234 (2058)
.|..-+..|..+++-+..++.-+..+...++..+..+.+.++
T Consensus 388 ~l~~~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~ 429 (880)
T PRK03918 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIE 429 (880)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555544444333
No 21
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.06 E-value=0.00087 Score=94.81 Aligned_cols=260 Identities=20% Similarity=0.301 Sum_probs=124.2
Q ss_pred hHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh---hhhhhhcHHH---------
Q 045447 1193 SLQSVISFLRNRKSIAETEVALLTTEKLRLQKQLESALKAAE----NAQASLTTERAN---SRAMLLTEEE--------- 1256 (2058)
Q Consensus 1193 ~L~eVI~yLRREKEIae~qlel~~qE~~RLqqQle~~qkqLd----Ear~~L~~Ere~---s~t~~~s~e~--------- 1256 (2058)
.++.-...+|+..+-++.++.-..++...++.++..++..|+ ....-|..+... .-.-+..++.
T Consensus 494 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~~p~We~tIGKVid~eLL~r~dL~P~ 573 (1201)
T PF12128_consen 494 ELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKNKPGWEQTIGKVIDEELLYRTDLEPQ 573 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhCCCcHHHHhHhhCCHHHhcCCCCCCe
Confidence 455556677777777777777777777777777777777764 333333332100 0001111000
Q ss_pred ------HHHHH---HHHHHHHH--HHHhhHHHHHHhhhhHHH-------HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 045447 1257 ------IKSLK---LQVRELNL--LRESNVQLREENKYNFEE-------CQKLREVAQKTKSDCDNLENLLRERQIEIEA 1318 (2058)
Q Consensus 1257 ------hkeLm---eKleqLNl--LRESN~tLReE~~~~~~k-------~qkL~e~lqk~~~elepLe~~i~el~~elE~ 1318 (2058)
...|. --|.-|.+ +.-+-..||.+...+... .+.+++.+.+....+.++...+..+...+..
T Consensus 574 l~~~~~~dslyGl~LdL~~I~~pd~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~ 653 (1201)
T PF12128_consen 574 LVEDSGSDSLYGLSLDLSAIDVPDYAASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQ 653 (1201)
T ss_pred ecCCCcccccceeEeehhhcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00000 00111111 222333555544433322 2233444444444555555566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhH
Q 045447 1319 CKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSR 1398 (2058)
Q Consensus 1319 ~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~ 1398 (2058)
....+..|+.+...|+.+....+.... ..+...+..+...+.....++.. .+......+..++..+....
T Consensus 654 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~l~~~l~~~~~e~~~---~~~~~~~~~~e~~~e~~~~~ 723 (1201)
T PF12128_consen 654 AEQDLQRLKNEREQLKQEIEEAKEERK-------EQIEEQLNELEEELKQLKQELEE---LLEELKEQLKELRNELKAQW 723 (1201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 666667777777777777766666443 33333344444333333333321 11222233334443333333
Q ss_pred HHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHhc
Q 045447 1399 LELS-EKEKRLSDISQAEAARKLEMEKQKRISAQLRR-KCEML---SKEKEESIKENQSLARQLDDLKQ 1462 (2058)
Q Consensus 1399 ~e~~-~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~-~~e~~---~~e~~e~~~e~~~l~~q~~~~k~ 1462 (2058)
.++. .+..++..+.+..+..+.+++...+.+..|.. ++..- ...+..+.+++..|.++|..++.
T Consensus 724 ~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~ 792 (1201)
T PF12128_consen 724 QELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEE 792 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 55556666666666666666666666655553 11111 13444555555555555555553
No 22
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.04 E-value=0.001 Score=94.06 Aligned_cols=139 Identities=26% Similarity=0.321 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 045447 1305 LENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKL 1384 (2058)
Q Consensus 1305 Le~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~ 1384 (2058)
+...|..+...+.....+...-..+++.|.. +.| +...|||..+..|+.+|..|+.+|..... .+
T Consensus 730 ~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~--~eL--~~~GvD~~~I~~l~~~i~~L~~~l~~ie~-----------~r 794 (1201)
T PF12128_consen 730 LDEQIEQIKQEIAAAKQEAKEQLKELEQQYN--QEL--AGKGVDPERIQQLKQEIEQLEKELKRIEE-----------RR 794 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHH-----------hH
Confidence 3444445555555555555555556666765 344 56799999999999999999886654432 22
Q ss_pred hHHHHHHHHHHhhHH-------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1385 DTISQLEQELANSRL-------ELSEKEKRLSDISQAEAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQL 1457 (2058)
Q Consensus 1385 ~~~~~l~~~L~~~~~-------e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~ 1457 (2058)
..|..++.-+..... ....+..++.++......+..++...++.+.....+++ +.+..+.+....+...+
T Consensus 795 ~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le---~~~~~~~~~~~~~~~~l 871 (1201)
T PF12128_consen 795 AEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELE---EELKALEEQLEQLEEQL 871 (1201)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 333344444433333 34455555555544444444444443333333333222 33334444444444444
Q ss_pred HHHh
Q 045447 1458 DDLK 1461 (2058)
Q Consensus 1458 ~~~k 1461 (2058)
..++
T Consensus 872 ~~l~ 875 (1201)
T PF12128_consen 872 RRLR 875 (1201)
T ss_pred HHHH
Confidence 4333
No 23
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.85 E-value=0.0013 Score=86.51 Aligned_cols=399 Identities=20% Similarity=0.213 Sum_probs=222.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH
Q 045447 1051 SQIVNLEVQVSALKEDLEKEHERRQAAQANYERQVILQSETIQELTKTSQALASLQEQASELRKLADALKA------ENS 1124 (2058)
Q Consensus 1051 ~~~~~~E~q~~~l~~DL~~Q~~~a~eAQ~nYErElvLHAe~IqeL~k~~e~~~~lq~e~~elr~~aesak~------~L~ 1124 (2058)
..+++++..+..|++.|+.-+.. ...=. ++|-.+...+..+++++.++-..+..|.. ++-
T Consensus 177 velAdle~kir~LrqElEEK~en------ll~lr--------~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalr 242 (1195)
T KOG4643|consen 177 VELADLEKKIRTLRQELEEKFEN------LLRLR--------NELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALR 242 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 34455666666666666643321 11110 34555556677777777777666655543 233
Q ss_pred HHHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCCCCCchhHHHHHHHH
Q 045447 1125 ELKSKWELEKSVLEKLKNE---AEEKYDEVNEQNKILHSRLEALHIQLTEKDGSSVRISSQSTDSNPIGDASLQSVISFL 1201 (2058)
Q Consensus 1125 e~e~SWeeqk~~Le~Ei~e---l~~R~eDL~~QN~LLH~QLE~lt~Qia~~~~~~a~~ss~s~~~~s~~~e~L~eVI~yL 1201 (2058)
+-..-|. ..|..-+-+ .+.|+++|..=|+.|..-.+-|..|+-.+....-+++ . ....=.|..=+.||
T Consensus 243 e~aer~d---~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~t----l--eseiiqlkqkl~dm 313 (1195)
T KOG4643|consen 243 EQAERPD---TTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGAT----L--ESEIIQLKQKLDDM 313 (1195)
T ss_pred HhhhcCC---CccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCC----h--HHHHHHHHHHHHHH
Confidence 3344565 344444444 5889999999999998888888877754432211111 0 01112477778899
Q ss_pred hhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhhhhhhhcHHHHHHHH---HHHHHHH
Q 045447 1202 RNRKSIAETEVALLTTEKLRLQKQLESALKAAENAQ----------ASLTTERANSRAMLLTEEEIKSLK---LQVRELN 1268 (2058)
Q Consensus 1202 RREKEIae~qlel~~qE~~RLqqQle~~qkqLdEar----------~~L~~Ere~s~t~~~s~e~hkeLm---eKleqLN 1268 (2058)
|-|.+....|.+-+..|+.-|+.+-+.+..+.+-.+ ..+..+.+ .+.++.-++-+| +++.+|.
T Consensus 314 ~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~e----qLts~ralkllLEnrrlt~tle 389 (1195)
T KOG4643|consen 314 RSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENE----QLTSDRALKLLLENRRLTGTLE 389 (1195)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHH----HhhhHHHHHHHHHhHHHHHHHH
Confidence 999999999999999999988876533222221111 11111111 122222344443 3355555
Q ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 045447 1269 LLRESNVQLREENKYNFEECQKLREVAQKTKSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNID 1348 (2058)
Q Consensus 1269 lLRESN~tLReE~~~~~~k~qkL~e~lqk~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riD 1348 (2058)
-++.| +...+-.+.-+|..+-.++..+++.|+..|..+...+..+...-+.|+.|.+....=+...=.-|
T Consensus 390 elqss------s~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~---- 459 (1195)
T KOG4643|consen 390 ELQSS------SYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSL---- 459 (1195)
T ss_pred HHhhh------hHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----
Confidence 55555 22222222223333333344455556666655555555555555556655555544333222222
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 045447 1349 VEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQKRI 1428 (2058)
Q Consensus 1349 PeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~~~ 1428 (2058)
..+.++..+..++-.- ..++.+.+......|+++..-|.....+++.+...++.. +.+|......
T Consensus 460 -~rq~~e~e~~~q~ls~-------~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~el-------keQ~kt~~~q 524 (1195)
T KOG4643|consen 460 -SRQSLENEELDQLLSL-------QDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNEL-------KEQYKTCDIQ 524 (1195)
T ss_pred -HHHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 1222222222222111 111233334455556777777777777777666666555 7777777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcchhHHHHhhh----hhhhHHHHHHHHHHHHHHHHHHhh
Q 045447 1429 SAQLRRKCEMLSKEKEESIKENQSLARQLDDLKQGKKSTGDVTGEQVMKEKE----EKDTRIQILERTVERQREELKKEK 1504 (2058)
Q Consensus 1429 ~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k~~~~~~~~~~~~q~~ke~~----~~~~~~~~~~~~~e~~~~~~~~e~ 1504 (2058)
..-++++|+-+...+..+..|+..|.+||..|+.+ ...+. ..||.+...+ +-+..|..|. .+-+.++.|..++
T Consensus 525 ye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t-~qn~~-~LEq~~n~lE~~~~elkk~idaL~-alrrhke~LE~e~ 601 (1195)
T KOG4643|consen 525 YELLSNKLEELEELLGNLEEENAHLLKQIQSLKTT-SQNGA-LLEQNNNDLELIHNELKKYIDALN-ALRRHKEKLEEEI 601 (1195)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-hHHHH-HHHHhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 88888999999999999999999999999999985 33333 6677776433 2233344444 4444444444443
No 24
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.82 E-value=6.5e-10 Score=149.50 Aligned_cols=117 Identities=20% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcchhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 045447 1426 KRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLKQGKKSTGDVTGEQVMKEKEEKDTRIQILERTVERQREELKKEKD 1505 (2058)
Q Consensus 1426 ~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k~~~~~~~~~~~~q~~ke~~~~~~~~~~~~~~~e~~~~~~~~e~~ 1505 (2058)
...+.+-+..+..+...+..|..++..|+..|+.+-++..+.|. -++.+ -+.||+.|+..|+- |-.
T Consensus 699 ~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k---~~i~k----LE~ri~eLE~~Le~-------E~r 764 (859)
T PF01576_consen 699 AEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALKGGK---KQIAK----LEARIRELEEELES-------EQR 764 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc---cHHHH----HhHHHHHHHHHHHH-------HHH
Confidence 33333333344444466666666777777777777655444432 12222 34788888888877 333
Q ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh
Q 045447 1506 DNQKEKEKRLKGEKVMLDSAKLADQWKTRI---SSELEQHKQAVKRLSDELEKL 1556 (2058)
Q Consensus 1506 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~---~~~~e~~~~~~~~l~~el~~~ 1556 (2058)
......-..++.|+-|-+..-.++.++..+ .+.++++...|+.+..+++..
T Consensus 765 ~~~~~~k~~rk~er~~kEl~~q~ee~~k~~~~~~d~~~kl~~k~k~~krq~eea 818 (859)
T PF01576_consen 765 RRAEAQKQLRKLERRVKELQFQVEEERKNAERLQDLVDKLQLKLKQLKRQLEEA 818 (859)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 333333334556777777777777666543 355556666666655444443
No 25
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.56 E-value=0.026 Score=80.82 Aligned_cols=186 Identities=15% Similarity=0.193 Sum_probs=90.7
Q ss_pred HHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH---
Q 045447 1264 VRELNLLRESNVQLREENKYNFEECQKLREVAQKTKSDCDNLENLLRERQIEIEACKKEMEKQRMEKENL----EKR--- 1336 (2058)
Q Consensus 1264 leqLNlLRESN~tLReE~~~~~~k~qkL~e~lqk~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RW----kqR--- 1336 (2058)
-++|+-+.+.+...|.....+...++.|...+-.+.--..+ .+...++.+..++....+.. +| ..+
T Consensus 850 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~a~-~y~~~~~~~L~q 922 (1486)
T PRK04863 850 ERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADE------TLADRVEEIREQLDEAEEAK-RFVQQHGNALAQ 922 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcCCc------cHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 35667777888888888777666666655433322211112 13333444444444333222 22 222
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhh--HHHHHHHHHHhhHHHHH-HHHHHhhhHHH
Q 045447 1337 VSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLD--TISQLEQELANSRLELS-EKEKRLSDISQ 1413 (2058)
Q Consensus 1337 ~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~--~~~~l~~~L~~~~~e~~-~le~k~~d~~~ 1413 (2058)
.+.+|..- +-||++|..|+.+....+..++...+.+-.+.-... -.. .|..--.-|++ .++++ .++.++..+..
T Consensus 923 LE~~l~~L-~~Dp~~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~y~~~~~~l~~-~~~~~~~Le~~Le~iE~ 999 (1486)
T PRK04863 923 LEPIVSVL-QSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQ-RRAHFSYEDAAEMLAK-NSDLNEKLRQRLEQAEQ 999 (1486)
T ss_pred HHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccHHHHHhHhhc-chhhhHHHHHHHHHHHH
Confidence 23333333 578999999999999998877766655533221100 000 02222222222 22233 55556655544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1414 AEAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDD 1459 (2058)
Q Consensus 1414 ~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~ 1459 (2058)
....++.++...++...+.+..+..+...+..+.+.+..++..+.+
T Consensus 1000 ~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~ 1045 (1486)
T PRK04863 1000 ERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQD 1045 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4545555555444444444444444444444444444444444433
No 26
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.48 E-value=0.0018 Score=82.84 Aligned_cols=61 Identities=26% Similarity=0.409 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhhhhHHH--HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045447 1494 ERQREELKKEKDDNQKE--KEKRLKGEKVMLDSAKLADQWKTRISSELEQHKQAVKRLSDELEKL 1556 (2058)
Q Consensus 1494 e~~~~~~~~e~~~~~~~--~~~~~~~e~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~el~~~ 1556 (2058)
+++.-+|.+++|-++-- -.+|.-.| .-.++.-++.||.+|......+.+-+.+|...|.+.
T Consensus 395 qkL~~ql~ke~D~n~vqlsE~~rel~E--lks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 395 QKLEKQLGKEKDCNRVQLSENRRELQE--LKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444566655421 12222223 445566677777777777766667677776666655
No 27
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.45 E-value=0.02 Score=74.69 Aligned_cols=55 Identities=33% Similarity=0.384 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 045447 1264 VRELNLLRESNVQLREENKYNFEECQKLREVAQKTKSDCDNLENLLRERQIEIEA 1318 (2058)
Q Consensus 1264 leqLNlLRESN~tLReE~~~~~~k~qkL~e~lqk~~~elepLe~~i~el~~elE~ 1318 (2058)
-++++.|+-+...||.|..+....+..+.+........+..|+..+.....+++.
T Consensus 301 k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea 355 (522)
T PF05701_consen 301 KEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEA 355 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Confidence 4678888989999999987655555555554444444444444444444444433
No 28
>PRK01156 chromosome segregation protein; Provisional
Probab=98.39 E-value=0.047 Score=75.75 Aligned_cols=18 Identities=11% Similarity=0.095 Sum_probs=11.3
Q ss_pred ccccCCCCCCCCCccccc
Q 045447 1675 RPRLKRPEESQGDMETSE 1692 (2058)
Q Consensus 1675 ~~~~~~~~~~~~~~~~~~ 1692 (2058)
.|.+.--+||-+..|...
T Consensus 825 ~~~~lilDEpt~~lD~~~ 842 (895)
T PRK01156 825 DKSLLIMDEPTAFLDEDR 842 (895)
T ss_pred CCCeEEEeCCCCcCCHHH
Confidence 466666777766666544
No 29
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.34 E-value=0.048 Score=73.89 Aligned_cols=109 Identities=25% Similarity=0.352 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhH
Q 045447 1307 NLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDT 1386 (2058)
Q Consensus 1307 ~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~ 1386 (2058)
..+++++..++.++.|++-+++.... ++|+..|=.++..|--+-++.-+.+++.+...+....+.+..+...+.+....
T Consensus 858 ~~l~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~ 936 (1293)
T KOG0996|consen 858 KRLKELEEQIEELKKEVEELQEKAAK-KARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRN 936 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCccc
Confidence 44577788888889999999877777 89999999999999999999999999988888888888888777766666666
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhhHHHHHH
Q 045447 1387 ISQLEQELANSRLELSEKEKRLSDISQAEA 1416 (2058)
Q Consensus 1387 ~~~l~~~L~~~~~e~~~le~k~~d~~~~~~ 1416 (2058)
+++....+.+...++..+++.+.++.....
T Consensus 937 i~k~q~~l~~le~~~~~~e~e~~~L~e~~~ 966 (1293)
T KOG0996|consen 937 IAKAQKKLSELEREIEDTEKELDDLTEELK 966 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666655555555554444433333
No 30
>PF13514 AAA_27: AAA domain
Probab=98.33 E-value=0.074 Score=75.48 Aligned_cols=257 Identities=19% Similarity=0.242 Sum_probs=131.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 045447 1301 DCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCR---NIDVEDYDRLKVEVRQMEEKLSGKNAEIEETR 1377 (2058)
Q Consensus 1301 elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~---riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~ 1377 (2058)
....|+..+..+...++....+...++.....|+.+-...|..++ .++|..+......+..+...+ .++..+.
T Consensus 674 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~~~~~~l~~l~~l~~~~----~~~~~~~ 749 (1111)
T PF13514_consen 674 RREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALAELGLPADASPEEALEALELLEELREAL----AEIRELR 749 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 455566667777777888888888888999999999999999884 578888877766666655322 2222222
Q ss_pred hhhhhhhhHHHHHHHHHHhhHHHHHH-H-HHHhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1378 NLLSTKLDTISQLEQELANSRLELSE-K-EKRLSDISQAEAARKLEMEK---QKRISAQLRRKCEMLSKEKEESIKENQS 1452 (2058)
Q Consensus 1378 ~~l~~~~~~~~~l~~~L~~~~~e~~~-l-e~k~~d~~~~~~~l~~e~e~---~~~~~~~~k~~~e~~~~e~~e~~~e~~~ 1452 (2058)
..+......+..++..+..+...+.. + ..-.. .....|..-+.. .......++..++.+.+++..+..++..
T Consensus 750 ~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~---~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 826 (1111)
T PF13514_consen 750 RRIEQMEADLAAFEEQVAALAERLGPDLPEDPAE---EALEALRARLEEAREAQEERERLQEQLEELEEELEQAEEELEE 826 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222223333333333332222210 0 00000 112222322222 2233333444555556666777777777
Q ss_pred HHHHHHHHhcccccCCCcchhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhhHHHHHHHHHHHHH
Q 045447 1453 LARQLDDLKQGKKSTGDVTGEQVMKEKEEKDTRIQILERTVERQREELKKEKDDNQKEKEKRLKGEKVMLDSAKLADQWK 1532 (2058)
Q Consensus 1453 l~~q~~~~k~~~~~~~~~~~~q~~ke~~~~~~~~~~~~~~~e~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 1532 (2058)
+..++..+-...+.... ....+..+...+...+...+..+...|....+.+.-+.....-. ...+..+..++
T Consensus 827 ~~~~l~~L~~~a~~~~~----e~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~e~~----~~d~~~l~~~l 898 (1111)
T PF13514_consen 827 LEAELAELLEQAGVEDE----EELREAEERAEERRELREELEDLERQLERQADGLDLEELEEELE----ELDPDELEAEL 898 (1111)
T ss_pred HHHHHHHHHHhccCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHhh----ccCHHHHHHHH
Confidence 77777776643322222 12222222333444444444444434433222221111100000 00134455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcceeec
Q 045447 1533 TRISSELEQHKQAVKRLSDELEKLKHTEAGLPEGTSVVQL 1572 (2058)
Q Consensus 1533 ~~~~~~~e~~~~~~~~l~~el~~~~~~~~~~~~~~~~~~~ 1572 (2058)
..+...++.+...+..+.+++..++..+.++-+++.+..+
T Consensus 899 ~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~a~l 938 (1111)
T PF13514_consen 899 EELEEELEELEEELEELQEERAELEQELEALEGDDDAAEL 938 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHH
Confidence 6666666666666677777777777766666665554443
No 31
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.31 E-value=0.0094 Score=76.51 Aligned_cols=178 Identities=21% Similarity=0.185 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCCCCCchhHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHH
Q 045447 1148 YDEVNEQNKILHSRLEALHIQLTEKDGSSVRISSQSTDSNPIGDASLQSVISFLRNRKSIAETEVALLTTEKLRLQKQLE 1227 (2058)
Q Consensus 1148 ~eDL~~QN~LLH~QLE~lt~Qia~~~~~~a~~ss~s~~~~s~~~e~L~eVI~yLRREKEIae~qlel~~qE~~RLqqQle 1227 (2058)
...+..+|..|..||..+-.++.+.++.+ ..|..=++-+---+|-..+.++-+.-|+.-|+.+|.
T Consensus 278 ~~~~~~e~e~LkeqLr~~qe~lqaSqq~~---------------~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLa 342 (546)
T PF07888_consen 278 AQQLQQENEALKEQLRSAQEQLQASQQEA---------------ELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLA 342 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34555666667777776665554333211 112222222222235555667777788888899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHHHHHHHHH-HhhHHHHHHhhhhHHHHHHHHHHHHHhh-------
Q 045447 1228 SALKAAENAQASLTTERANSRAMLLTEEEIKSLKLQVRELNLLR-ESNVQLREENKYNFEECQKLREVAQKTK------- 1299 (2058)
Q Consensus 1228 ~~qkqLdEar~~L~~Ere~s~t~~~s~e~hkeLmeKleqLNlLR-ESN~tLReE~~~~~~k~qkL~e~lqk~~------- 1299 (2058)
.+...|.+.+....+++......+. ..+ ++|..|+.-. .=+..|.+|+. .|++|+..+.+.+
T Consensus 343 d~~l~lke~~~q~~qEk~~l~~~~e---~~k---~~ie~L~~el~~~e~~lqEer~----E~qkL~~ql~ke~D~n~vql 412 (546)
T PF07888_consen 343 DASLELKEGRSQWAQEKQALQHSAE---ADK---DEIEKLSRELQMLEEHLQEERM----ERQKLEKQLGKEKDCNRVQL 412 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HhH---HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhhHHHH
Confidence 9999999999999988876543322 111 2345554322 22445655543 3445555444433
Q ss_pred ----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHH
Q 045447 1300 ----SDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVE 1350 (2058)
Q Consensus 1300 ----~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPe 1350 (2058)
.++..|++.++-++.+.+.+..|...|.....++.+|...+-+-|-.-||.
T Consensus 413 sE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~~~~~~~~ 467 (546)
T PF07888_consen 413 SENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVADEKWKEAAA 467 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc
Confidence 234456666666666777777777777778888888887776655555443
No 32
>PRK01156 chromosome segregation protein; Provisional
Probab=98.28 E-value=0.078 Score=73.61 Aligned_cols=37 Identities=14% Similarity=0.255 Sum_probs=20.1
Q ss_pred chhHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHH
Q 045447 1191 DASLQSVISFLRNRKSIAETEVALLTTEKLRLQKQLE 1227 (2058)
Q Consensus 1191 ~e~L~eVI~yLRREKEIae~qlel~~qE~~RLqqQle 1227 (2058)
.+-..++|.++..+.....-++.-+..+..-+...+.
T Consensus 464 ~e~~~e~i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~ 500 (895)
T PRK01156 464 EEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIV 500 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666776666555555555555444444444443
No 33
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.20 E-value=0.081 Score=70.69 Aligned_cols=132 Identities=15% Similarity=0.182 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 55 LLEQKFISLQEEFSKVESQNAQLQKSL---DDRVNELAEVQSQKHQLHLQLIGKDGEIERLTMEVAELHKSRRQLMELVE 131 (2058)
Q Consensus 55 ~lEqk~~sl~~e~~~le~e~~eL~~~l---~~~~~Ela~~q~~~~~L~~~~~~~dseverLr~ei~eLe~ekr~ll~llE 131 (2058)
.+.+-+..++++|+++.+++.++-..- +.-..|++.+......-......+..++..++.++.+|...|+-|++--
T Consensus 202 ~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlmDs~fykdRveelkedN~vLleek- 280 (1195)
T KOG4643|consen 202 RLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEK- 280 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHH-
Confidence 355566677777777777777664422 1222333333322222222344556688899999999998777776532
Q ss_pred hhhhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 045447 132 QKDLQHSEKGATIKAYLDKI--INLTDNAAQREARLAETEAELARAQATCTRLTQGKELIERHN 193 (2058)
Q Consensus 132 rk~~e~eel~e~l~~l~eKi--~eL~~~~~~~e~rl~e~es~~~s~k~~e~RLeQE~eLLqknn 193 (2058)
+=|.+.|+.|..+. +.+..++-.++++++.++....--+.+..-|.-|..-|+-++
T Consensus 281 ------eMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~ 338 (1195)
T KOG4643|consen 281 ------EMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQK 338 (1195)
T ss_pred ------HHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33444555555444 666677777777777777666555555554444444444443
No 34
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.06 E-value=0.12 Score=67.58 Aligned_cols=157 Identities=19% Similarity=0.250 Sum_probs=93.4
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhh
Q 045447 1290 KLREVAQKTKSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGK 1369 (2058)
Q Consensus 1290 kL~e~lqk~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~ 1369 (2058)
.+..++..++..|+.....+..+...++.+..|+...+.+..+.++|. ......|.+|+.+|...
T Consensus 285 s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e---------------~~a~~~v~~L~~eL~~~ 349 (522)
T PF05701_consen 285 SAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKERE---------------KEASSEVSSLEAELNKT 349 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHhHHhhHHHHHHHH
Confidence 344444444455555555555555555556666666666666665553 12233445555555555
Q ss_pred hHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1370 NAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKE 1449 (2058)
Q Consensus 1370 ~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e 1449 (2058)
..+++.+...-......+..+-..|.....+.............+...++.+++..+..+.+...++....++......-
T Consensus 350 r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKas 429 (522)
T PF05701_consen 350 RSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKAS 429 (522)
T ss_pred HHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554444444444455666777777777777766677777777777778888888888888888888777776665544
Q ss_pred HHHHHHHHHHHh
Q 045447 1450 NQSLARQLDDLK 1461 (2058)
Q Consensus 1450 ~~~l~~q~~~~k 1461 (2058)
-.---.+|..+.
T Consensus 430 Ea~Ala~ik~l~ 441 (522)
T PF05701_consen 430 EALALAEIKALS 441 (522)
T ss_pred HHHHHHHHHHhh
Confidence 333334444443
No 35
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.05 E-value=0.039 Score=71.08 Aligned_cols=90 Identities=19% Similarity=0.163 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 769 SLNAAQELSRKLAMEVSVLKHEKEMLSNAEQRAYDEVRSLSQRVYRLQASLDTIQNAEEVREEARAAERRKQEEYIKQVE 848 (2058)
Q Consensus 769 ~L~aaeel~~~L~~E~~nLKaEK~Llk~~E~RL~~EnesL~~e~~rLqs~L~tiQs~~e~REeses~~Rrrle~~Ie~LE 848 (2058)
.+..+++.++....-+.+|.+|..+++.-=+-|..++.-|..+..||-..|..+...+. .+...|..+++++..|-
T Consensus 135 ~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld----~Etllr~d~~n~~q~Ll 210 (546)
T KOG0977|consen 135 ERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLD----DETLLRVDLQNRVQTLL 210 (546)
T ss_pred HHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH----HHHHHHHHHHhHHHHHH
Confidence 33444443333334445555555555544444444554555555555555555444322 23455667788888888
Q ss_pred HHHHHHHHHHHHHH
Q 045447 849 REWAEAKKELQEER 862 (2058)
Q Consensus 849 ~Els~lKkrL~eE~ 862 (2058)
.+|.-++.-=+.+.
T Consensus 211 eel~f~~~~h~~eI 224 (546)
T KOG0977|consen 211 EELAFLKRIHKQEI 224 (546)
T ss_pred HHHHHHHhccHHHH
Confidence 77777764444443
No 36
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.04 E-value=0.15 Score=67.71 Aligned_cols=239 Identities=17% Similarity=0.197 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCCC
Q 045447 1109 ASELRKLADALKAENSELKSKWELEKSVLEKLKNEAEEKYDEVNEQNKILHSRLEALHIQLTEKDGSSVRISSQSTDSNP 1188 (2058)
Q Consensus 1109 ~~elr~~aesak~~L~e~e~SWeeqk~~Le~Ei~el~~R~eDL~~QN~LLH~QLE~lt~Qia~~~~~~a~~ss~s~~~~s 1188 (2058)
+..+....+.....|......|..+-..|-.++..+....+....+=.=|-.+|..+..+++..... ..+.. .+
T Consensus 6 l~qlq~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~-----~~pa~-ps 79 (617)
T PF15070_consen 6 LKQLQAERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPP-----EPPAG-PS 79 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCc-----ccccc-ch
Confidence 3444444454455566666788888888888888888877777777666666677777666543210 01110 01
Q ss_pred CCchhHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHH---HHHH----HHHHHHHHHHHH------HHHHHhhhhhhh-cH
Q 045447 1189 IGDASLQSVISFLRNRKSIAETEVALLTTEKLRLQK---QLES----ALKAAENAQASL------TTERANSRAMLL-TE 1254 (2058)
Q Consensus 1189 ~~~e~L~eVI~yLRREKEIae~qlel~~qE~~RLqq---Qle~----~qkqLdEar~~L------~~Ere~s~t~~~-s~ 1254 (2058)
-....|..-+..||.|++.+..+|.....++.+|-. ..+. +...+.+..... -+...+-++.+. .-
T Consensus 80 e~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAl 159 (617)
T PF15070_consen 80 EVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRAL 159 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHH
Confidence 112368999999999999999999877666655522 1111 222222222111 111111111100 11
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1255 EEIKSLKLQVRELNLLRESNVQLREENKYNFEECQKLREVAQKTKSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLE 1334 (2058)
Q Consensus 1255 e~hkeLmeKleqLNlLRESN~tLReE~~~~~~k~qkL~e~lqk~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWk 1334 (2058)
++-++|..+|.+| -+.=+.|=|++-.+....+--+.....+..++..|+..+..+...++.+..|+..|+..++-.-
T Consensus 160 sQN~eLK~QL~El---q~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~ 236 (617)
T PF15070_consen 160 SQNRELKEQLAEL---QDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYL 236 (617)
T ss_pred HhHHHHHHHHHHH---HHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 2345666666654 3333444455432222222222222233345667778888888888888899998888877655
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 045447 1335 KRVSELLQRCRNIDVEDYDRLKVEVRQMEE 1364 (2058)
Q Consensus 1335 qR~q~LLeKy~riDPeE~e~Lk~Eie~Le~ 1364 (2058)
... ..| ++.|..|-.+.+.|..
T Consensus 237 ~~L----qqy----~a~~q~l~~e~e~L~~ 258 (617)
T PF15070_consen 237 GHL----QQY----VAAYQQLASEKEELHK 258 (617)
T ss_pred HHH----HHH----HHHHHHHHHHHHHHHH
Confidence 553 445 4455666666555554
No 37
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.03 E-value=0.027 Score=68.60 Aligned_cols=136 Identities=13% Similarity=0.182 Sum_probs=72.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 51 QTCSLLEQKFISLQEEFSKVESQNAQLQKSLDDRVNELAEVQSQKHQLHLQLIGKDGEIERLTMEVAELHKSRRQLMELV 130 (2058)
Q Consensus 51 Q~~~~lEqk~~sl~~e~~~le~e~~eL~~~l~~~~~Ela~~q~~~~~L~~~~~~~dseverLr~ei~eLe~ekr~ll~ll 130 (2058)
+.+..|..||.++=..+..|+.+|..|...+..-..-. ......+ ......++..|+..|..+..+|..+.--+
T Consensus 4 ~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~---~~~~~~~---~~~ye~el~~lr~~id~~~~eka~l~~e~ 77 (312)
T PF00038_consen 4 EELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKK---GEEVSRI---KEMYEEELRELRRQIDDLSKEKARLELEI 77 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHH---HHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcc---cccCccc---ccchhhHHHHhHHhhhhHHHHhhHHhhhh
Confidence 35667888999999999999999999987765221110 0011111 22345677888888888888777776544
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 045447 131 EQKDLQHSEKGATIKAYLDKIINLTDNAAQREARLAETEAELARAQATCTRLTQGKELIERH 192 (2058)
Q Consensus 131 Erk~~e~eel~e~l~~l~eKi~eL~~~~~~~e~rl~e~es~~~s~k~~e~RLeQE~eLLqkn 192 (2058)
..-..+++.+..-+.........+...+..+...++.....-.....+...|..|+..+++.
T Consensus 78 ~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~ 139 (312)
T PF00038_consen 78 DNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQN 139 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhh
Confidence 44444444443333333333333333333333333333333333333444444444444443
No 38
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.90 E-value=0.25 Score=65.72 Aligned_cols=107 Identities=24% Similarity=0.303 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCccccCCCCCCc-hh----HhHHHhHHHHHHHHHHH
Q 045447 880 VKQVEEMGKELATALRAVASAETRAAVAETKLSDMEKRIRPLDAKGDEVDDGSRPS-DE----VQLQVGKEELEKLKEEA 954 (2058)
Q Consensus 880 qkrid~l~~El~~~~eal~~aetr~~vle~rv~~Le~kL~~~~~k~~s~~~~~~~s-~E----~eL~~lk~ELe~lkeeL 954 (2058)
+.++..|..++...++.......++..|+..+..|..++...... ....+++ .| .++..|+.+++.|..+|
T Consensus 28 qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~----~~pa~pse~E~~Lq~E~~~L~kElE~L~~ql 103 (617)
T PF15070_consen 28 QQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPP----EPPAGPSEVEQQLQAEAEHLRKELESLEEQL 103 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCc----cccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444333333223334445666677777766654321 1223444 23 56677889999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 045447 955 QANREHMLQYKSIAQVNEAALKEMETVHENFRTRVE 990 (2058)
Q Consensus 955 ~~Ak~qveQYK~IAqsaEeaL~~l~~~~e~yK~e~E 990 (2058)
.+--...+++-.+...-|+.|.++....+.+.....
T Consensus 104 qaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~ 139 (617)
T PF15070_consen 104 QAQVENNEQLSRLNQEQEERLAELEEELERLQEQQE 139 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 865556677777777788899998888887776653
No 39
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.80 E-value=0.19 Score=61.36 Aligned_cols=35 Identities=31% Similarity=0.372 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 693 VRCLEDDLGKARSEIIALRSERDKLALEAEFAREK 727 (2058)
Q Consensus 693 ~k~L~eql~k~r~El~~LrsE~~K~s~q~e~a~ER 727 (2058)
+..||+.|..|=..+..|..++.++..++.+...+
T Consensus 6 L~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~ 40 (312)
T PF00038_consen 6 LQSLNDRLASYIEKVRFLEQENKRLESEIEELREK 40 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhc
Confidence 44566677777666666666666666655555544
No 40
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.76 E-value=0.2 Score=66.33 Aligned_cols=58 Identities=24% Similarity=0.342 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1070 EHERRQAAQANYERQVILQSETIQELTKTSQ----ALASLQEQASELRKLADALKAENSELK 1127 (2058)
Q Consensus 1070 Q~~~a~eAQ~nYErElvLHAe~IqeL~k~~e----~~~~lq~e~~elr~~aesak~~L~e~e 1127 (2058)
.++-+.+|+..|-+||.-|+++|..++=-++ .+..||.++..++...+.....|+-.+
T Consensus 291 e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILK 352 (1243)
T KOG0971|consen 291 EAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILK 352 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788999999999999999966553332 355677777777666665555555443
No 41
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=97.73 E-value=0.63 Score=65.11 Aligned_cols=93 Identities=19% Similarity=0.250 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 045447 1061 SALKEDLEKEHERRQAAQANYERQVILQSETIQELTKTSQALASLQEQASELRKLADALKAENSELKSKWELEKSVLEKL 1140 (2058)
Q Consensus 1061 ~~l~~DL~~Q~~~a~eAQ~nYErElvLHAe~IqeL~k~~e~~~~lq~e~~elr~~aesak~~L~e~e~SWeeqk~~Le~E 1140 (2058)
...++.+..++..-+-+++|-. |..+..+++.+..++..+..+.-.+. -.+..++...|..+
T Consensus 988 ~~~~~~l~~~~~~er~l~dnl~------------~~~l~~q~~e~~re~~~ld~Qi~~~~------~~~~~ee~~~L~~~ 1049 (1294)
T KOG0962|consen 988 NEIKQKIRNQYQRERNLKDNLT------------LRNLERKLKELERELSELDKQILEAD------IKSVKEERVKLEEE 1049 (1294)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHH
Confidence 3345555555554444444433 45555555566666666655543221 25667888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045447 1141 KNEAEEKYDEVNEQNKILHSRLEALHIQLTE 1171 (2058)
Q Consensus 1141 i~el~~R~eDL~~QN~LLH~QLE~lt~Qia~ 1171 (2058)
+..+.....++-.+|+=+|+|+..+..++..
T Consensus 1050 ~~~l~se~~~~lg~~ke~e~~i~~~k~eL~~ 1080 (1294)
T KOG0962|consen 1050 REKLSSEKNLLLGEMKQYESQIKKLKQELRE 1080 (1294)
T ss_pred HHHhhhHhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999988753
No 42
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.68 E-value=0.46 Score=62.30 Aligned_cols=174 Identities=22% Similarity=0.258 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 045447 1352 YDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQKRISAQ 1431 (2058)
Q Consensus 1352 ~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~ 1431 (2058)
.+++..++.+...+....+.=+..+.+...........+-..+......+..++..+.|+........+.+...+.....
T Consensus 421 ~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~ 500 (716)
T KOG4593|consen 421 EKRLAEELPQVTKEREQLKGLVQKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESEL 500 (716)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444444444433333333333333333333344555666666677777788889999988888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccc----------ccCCCc-chhHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 045447 1432 LRRKCEMLSKEKEESIKENQSLARQLDDLK-QGK----------KSTGDV-TGEQVMKEKEEKDTRIQILERTVERQREE 1499 (2058)
Q Consensus 1432 ~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k-~~~----------~~~~~~-~~~q~~ke~~~~~~~~~~~~~~~e~~~~~ 1499 (2058)
+..+++.+.+++..|..++..|.-+++--- +|. .+++++ ...|+. ..++-.|...+++++.-
T Consensus 501 ~~e~i~~~~ke~~~Le~En~rLr~~~e~~~l~gd~~~~~~rVl~~~~npt~~~~~~~------k~~~e~LqaE~~~lk~~ 574 (716)
T KOG4593|consen 501 LREKIEQYLKELELLEEENDRLRAQLERRLLQGDYEENITRVLHMSTNPTSKARQIK------KNRLEELQAELERLKER 574 (716)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccceeeecCCchHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 888899999999999999976665444322 221 122231 234444 46777777888887732
Q ss_pred HHHhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 045447 1500 LKKEKDDNQKEKEKRLKGEKVMLDSAKLADQWKTRIS 1536 (2058)
Q Consensus 1500 ~~~e~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 1536 (2058)
|. .+.+ -+......+.+|...+.. -.+..+|.
T Consensus 575 l~-~le~---~~~~~~d~~i~~~s~~~~-~~ev~qlk 606 (716)
T KOG4593|consen 575 LT-ALEG---DKMQFRDGEIAVHSLLAF-SKEVAQLK 606 (716)
T ss_pred HH-HHhc---cCCcccchhhHHhhhhcc-hHHHHHHH
Confidence 22 2222 355666667777777764 33444443
No 43
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.63 E-value=0.34 Score=62.36 Aligned_cols=108 Identities=22% Similarity=0.330 Sum_probs=79.7
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 045447 1289 QKLREVAQKTKSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSG 1368 (2058)
Q Consensus 1289 qkL~e~lqk~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~ 1368 (2058)
.+++.=+.++...-+.+...+..++.+++.+..|++.|+.++++++.- |++. +|.++|++++-.+++.|+..|..
T Consensus 276 nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~----Ie~Q-~iS~~dve~mn~Er~~l~r~l~~ 350 (581)
T KOG0995|consen 276 NKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQ----IELQ-GISGEDVERMNLERNKLKRELNK 350 (581)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhc-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566677788889999999999999999999999999875 5665 99999999999999999998887
Q ss_pred hhHHHHHHHhhhhhh----hhHHHHHHHHHHhhHHHH
Q 045447 1369 KNAEIEETRNLLSTK----LDTISQLEQELANSRLEL 1401 (2058)
Q Consensus 1369 ~~ae~e~~~~~l~~~----~~~~~~l~~~L~~~~~e~ 1401 (2058)
..-+++++.+.+-.. ++.+..++.++..+.+-+
T Consensus 351 i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~ 387 (581)
T KOG0995|consen 351 IQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLI 387 (581)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776655443332 334444444444444333
No 44
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.57 E-value=8e-05 Score=100.09 Aligned_cols=297 Identities=24% Similarity=0.287 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHH---HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1258 KSLKLQVRELNLLRESNVQLREENKYNFEEC---QKLREVAQKTKSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLE 1334 (2058)
Q Consensus 1258 keLmeKleqLNlLRESN~tLReE~~~~~~k~---qkL~e~lqk~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWk 1334 (2058)
+.+..++..+.-|-..|+.|+.|++++..-. .-|+++...++.++..++ .+..++..++-++..|..++.-|.
T Consensus 250 k~l~~ql~~i~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E----~~~~el~~lq~e~~~Le~el~sW~ 325 (722)
T PF05557_consen 250 KELKEQLAHIRELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLERLE----ELEEELAELQLENEKLEDELNSWE 325 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777788888888887654211 123333333333333222 333444455667777888888996
Q ss_pred HHHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHH
Q 045447 1335 KRVSELLQRC--RNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDIS 1412 (2058)
Q Consensus 1335 qR~q~LLeKy--~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~ 1412 (2058)
. ++... +-..|+++ -..|..|+ .....|.+++..+..+...++..+.++.
T Consensus 326 s----l~~~~~~~~~sPe~l---~~~l~~lq---------------------~~~~~L~ek~g~~~~~~~~l~~~~~~Le 377 (722)
T PF05557_consen 326 S----LLQDIGLEFDSPEDL---ARALVQLQ---------------------QENASLTEKLGSLQSELRELEEEIQELE 377 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred H----HHhcCCCCCCCHHHH---HHHHHHHH---------------------HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5 33333 23446543 22233222 1223344445555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcchhHHHHhhhhhhhHHHHHHHH
Q 045447 1413 QAEAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLKQGKKSTGDVTGEQVMKEKEEKDTRIQILERT 1492 (2058)
Q Consensus 1413 ~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k~~~~~~~~~~~~q~~ke~~~~~~~~~~~~~~ 1492 (2058)
.+.+.+..+++..+..+...+.....+.+++.-+.+|..-|..++..+..-...... ..+..+ +-.+|..+.+.
T Consensus 378 ~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~--~~~~~~----~~~~~~~l~~~ 451 (722)
T PF05557_consen 378 QEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNP--SEQDTQ----RIKEIEDLEQL 451 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccC--chhHHH----HHhhHHHHHHH
Confidence 555555556665555555555555566688888888888888888888732211111 111111 12223333332
Q ss_pred HHHHHHH-------HHHhhhhhH-------HH----HHHhhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1493 VERQREE-------LKKEKDDNQ-------KE----KEKRLKGEK---VMLDSAKLADQWKTRISSELEQHKQAVKRLSD 1551 (2058)
Q Consensus 1493 ~e~~~~~-------~~~e~~~~~-------~~----~~~~~~~e~---~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~ 1551 (2058)
++..+.+ |.++....+ .+ +..-...+. .+-.-+..+..+...|...+.++.+.+..|..
T Consensus 452 ~~~~~~ele~~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~ 531 (722)
T PF05557_consen 452 VDEYKAELEAQLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELES 531 (722)
T ss_dssp ------------------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221111 222211111 00 111111111 12233455666777777777777777778888
Q ss_pred HHHHhhhhhcCC-CCCcceeeccCccchhhhhhHHHHHHHHHHH
Q 045447 1552 ELEKLKHTEAGL-PEGTSVVQLLSGTNLDDHASSYFSAVESFER 1594 (2058)
Q Consensus 1552 el~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1594 (2058)
+|+++. ..|.+ |..+-|.++-+.+..++++.. -..++.+-.
T Consensus 532 ~l~~~~-L~g~~~~~~trVL~lr~NP~~~~~~~k-~~~l~~L~~ 573 (722)
T PF05557_consen 532 ELEKLT-LQGEFNPSKTRVLHLRDNPTSKAEQIK-KSTLEALQA 573 (722)
T ss_dssp HHHHHC-CCT--BTTTEEEEEESS-HHHHHHHHH-HHHHHHHHH
T ss_pred HHHHhh-hccccCCCCceeeeeCCCcHHHHHHHH-HHHHHHHHH
Confidence 887743 24454 889999999999999888654 344444433
No 45
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.57 E-value=0.00029 Score=94.78 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc
Q 045447 1440 SKEKEESIKENQSLARQLDDLKQGKKS 1466 (2058)
Q Consensus 1440 ~~e~~e~~~e~~~l~~q~~~~k~~~~~ 1466 (2058)
...+..|.+|++.|..++..+-.|...
T Consensus 565 ~~~l~~L~~En~~L~~~l~~le~~~~~ 591 (722)
T PF05557_consen 565 KSTLEALQAENEDLLARLRSLEEGNSQ 591 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTT--
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 367788888888888888777655543
No 46
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=97.54 E-value=0.15 Score=62.51 Aligned_cols=123 Identities=27% Similarity=0.314 Sum_probs=78.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHHHHH-HHHHHhhHHHHHHhhhhHHHHH
Q 045447 1211 EVALLTTEKLRLQKQLESALKAAENAQASLTTERANSRAMLLTEEEIKSLKLQVREL-NLLRESNVQLREENKYNFEECQ 1289 (2058)
Q Consensus 1211 qlel~~qE~~RLqqQle~~qkqLdEar~~L~~Ere~s~t~~~s~e~hkeLmeKleqL-NlLRESN~tLReE~~~~~~k~q 1289 (2058)
+|.-+..+..++..++....+..+... .+++..++... +....-.+|+.| --|.--|.+|.+|+......-.
T Consensus 30 k~~ell~e~k~~~k~~~~~~Kk~~~l~----kek~~l~~E~~---k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee 102 (309)
T PF09728_consen 30 KYAELLEEMKRLQKQLKKLQKKQEQLQ----KEKDQLQSELS---KAILAKSKLESLCRELQKQNKKLKEESKRRAREEE 102 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666655555444322 22222221111 122334567777 5666778999999875433222
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 045447 1290 KLREVAQKTKSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRN 1346 (2058)
Q Consensus 1290 kL~e~lqk~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~r 1346 (2058)
..+. .-.+.++..|...+..++........+..+....+.+...|++.|.-
T Consensus 103 ~kR~------el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~ 153 (309)
T PF09728_consen 103 EKRK------ELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYEL 153 (309)
T ss_pred HHHH------HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 22456888888888889888888888999999999999999999963
No 47
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.50 E-value=2.3e-05 Score=105.07 Aligned_cols=225 Identities=20% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc--c-ccCCCCCCCCCCchhHHHHHHHHhhhhh------
Q 045447 1136 VLEKLKNEAEEKYDEVNEQNKILHSRLEALHIQLTEKDGSSV--R-ISSQSTDSNPIGDASLQSVISFLRNRKS------ 1206 (2058)
Q Consensus 1136 ~Le~Ei~el~~R~eDL~~QN~LLH~QLE~lt~Qia~~~~~~a--~-~ss~s~~~~s~~~e~L~eVI~yLRREKE------ 1206 (2058)
.+-.+...+..+|.+|..|-..|++..+.+......+..... . ...++....+....+|+.-+.-||.|-+
T Consensus 183 ~~~~e~d~l~q~~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~ 262 (713)
T PF05622_consen 183 RLVAERDELAQRCHELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELERLEEQR 262 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666666666666666666665543322211100 0 0001111111122345555555554322
Q ss_pred -HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHhhHHHHHHhh
Q 045447 1207 -IAETEVALLTTEKLRLQKQLESALKAAENA---QASLTTERANSRAMLLTEEEIKSLKLQVRELNLLRESNVQLREENK 1282 (2058)
Q Consensus 1207 -Iae~qlel~~qE~~RLqqQle~~qkqLdEa---r~~L~~Ere~s~t~~~s~e~hkeLmeKleqLNlLRESN~tLReE~~ 1282 (2058)
-...+++-...|...|+++.+.+.....++ ++.|+.-|+++.-...-.........||+.++-|+-=+..||+.|.
T Consensus 263 ~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~ 342 (713)
T PF05622_consen 263 DDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNA 342 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223344455667777888776665444443 3444444444322211222233445699999999999999999998
Q ss_pred hhHHHHHHHHHHHHHhh---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 045447 1283 YNFEECQKLREVAQKTK---SDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEV 1359 (2058)
Q Consensus 1283 ~~~~k~qkL~e~lqk~~---~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Ei 1359 (2058)
.+.+.+-.|++.+.++. ..++.++..|.++..++.....++..|..++.+++.++..+..-..+. -.+...|+..+
T Consensus 343 ~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l-~~e~~~L~e~~ 421 (713)
T PF05622_consen 343 VLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERL-QEERDSLRETN 421 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 88777777888777643 455666677777777776666666667777777777776665444332 23444444443
Q ss_pred HH
Q 045447 1360 RQ 1361 (2058)
Q Consensus 1360 e~ 1361 (2058)
+.
T Consensus 422 ee 423 (713)
T PF05622_consen 422 EE 423 (713)
T ss_dssp --
T ss_pred HH
Confidence 33
No 48
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.47 E-value=0.27 Score=63.73 Aligned_cols=290 Identities=19% Similarity=0.198 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCCCC--CchhHHHHHHHHhhhhhHHHHHHh
Q 045447 1136 VLEKLKNEAEEKYDEVNEQNKILHSRLEALHIQLTEKDGSSVRISSQSTDSNPI--GDASLQSVISFLRNRKSIAETEVA 1213 (2058)
Q Consensus 1136 ~Le~Ei~el~~R~eDL~~QN~LLH~QLE~lt~Qia~~~~~~a~~ss~s~~~~s~--~~e~L~eVI~yLRREKEIae~qle 1213 (2058)
.|...+...=.|+--|.+||+-|-.+|..+-.-+ +...++.. .-. ..-.++.+|.--=+++-=++..+.
T Consensus 46 ~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~--------~~~ts~ik-~~ye~El~~ar~~l~e~~~~ra~~e~ei~ 116 (546)
T KOG0977|consen 46 ELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVV--------GRETSGIK-AKYEAELATARKLLDETARERAKLEIEIT 116 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------cCCCcchh-HHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445556669999999999999877321 11101110 001 112345555554455555666666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH
Q 045447 1214 LLTTEKLRLQKQLESALKAAENAQASLTTERANSRAMLLTEEEIKSLKLQVRELNLLRESNVQLREENKYNFEECQKLRE 1293 (2058)
Q Consensus 1214 l~~qE~~RLqqQle~~qkqLdEar~~L~~Ere~s~t~~~s~e~hkeLmeKleqLNlLRESN~tLReE~~~~~~k~qkL~e 1293 (2058)
-+.-|..-|+..++..++.+..++.++.......-.. .++..-+...+ ..|.|-..-|+-|+.++...+..+..
T Consensus 117 kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~l---eAe~~~~krr~---~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 117 KLREELKELRKKLEKAEKERRGAREKLDDYLSRLSEL---EAEINTLKRRI---KALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhh---hhHHHHHHHHH---HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 6677888888888877777777777776443222111 11122222222 23444445555555444444444444
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCH-----HHH-HHHHHHHHHHHHHHh
Q 045447 1294 VAQKTKSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDV-----EDY-DRLKVEVRQMEEKLS 1367 (2058)
Q Consensus 1294 ~lqk~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDP-----eE~-e~Lk~Eie~Le~~L~ 1367 (2058)
.+.+...--..+++.++.|.-+|.++....+ +.+.....+. +.|+ +.| .+|..-|..+..+..
T Consensus 191 ~ld~Etllr~d~~n~~q~Lleel~f~~~~h~----------~eI~e~~~~~-~rd~t~~~r~~F~~eL~~Ai~eiRaqye 259 (546)
T KOG0977|consen 191 QLDDETLLRVDLQNRVQTLLEELAFLKRIHK----------QEIEEERRKA-RRDTTADNREYFKNELALAIREIRAQYE 259 (546)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhccH----------HHHHHHHHHH-hhcccccchHHHHHHHHHHHHHHHHHHH
Confidence 4443222223456666666666666642221 2222222211 3333 333 234444444444222
Q ss_pred hhh----HHHH--------HHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1368 GKN----AEIE--------ETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQKRISAQLRRK 1435 (2058)
Q Consensus 1368 ~~~----ae~e--------~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~ 1435 (2058)
... .+++ .++......-......++++-.++..+..|-+|+.++......|-++++.++-.+..-++-
T Consensus 260 ~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~ 339 (546)
T KOG0977|consen 260 AISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRS 339 (546)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhh
Confidence 211 1111 1111111111222235567777777777777777777666677777777777766665554
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 045447 1436 CEMLSKEKEESIKENQSLA 1454 (2058)
Q Consensus 1436 ~e~~~~e~~e~~~e~~~l~ 1454 (2058)
++ ..+..+.++...|-
T Consensus 340 ~e---~~L~~kd~~i~~mR 355 (546)
T KOG0977|consen 340 FE---QALNDKDAEIAKMR 355 (546)
T ss_pred hh---hhhhhHHHHHHHHH
Confidence 44 33334444443333
No 49
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.45 E-value=0.54 Score=64.71 Aligned_cols=150 Identities=19% Similarity=0.190 Sum_probs=85.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 045447 1301 DCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLL 1380 (2058)
Q Consensus 1301 elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l 1380 (2058)
.+..+++.|..|+..++.+..++..+++++.--..|+++.-.- +.--.+--++.-++.+++...+|..++ .|
T Consensus 624 ~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~------~~e~~~e~~lk~~q~~~eq~~~E~~~~--~L 695 (1317)
T KOG0612|consen 624 IIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKE------ALEIKLERKLKMLQNELEQENAEHHRL--RL 695 (1317)
T ss_pred HHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 3455777777777777777777777777555556666655442 222222333444444444444555444 44
Q ss_pred hhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1381 STKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDL 1460 (2058)
Q Consensus 1381 ~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~ 1460 (2058)
.....+++.....|++-+..+..+++-...+..+...|+ ....+.+.+...+...+.-+..+.-.|+.++++.
T Consensus 696 ~~~e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~-------~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe 768 (1317)
T KOG0612|consen 696 QDKEAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLS-------NDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQE 768 (1317)
T ss_pred hhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHh-------hhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 455667777778888777777666666655533344443 3333333333334445555555666666666666
Q ss_pred hcccc
Q 045447 1461 KQGKK 1465 (2058)
Q Consensus 1461 k~~~~ 1465 (2058)
.+..-
T Consensus 769 ~~~r~ 773 (1317)
T KOG0612|consen 769 ISKRL 773 (1317)
T ss_pred HHHhh
Confidence 65443
No 50
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.44 E-value=0.14 Score=69.77 Aligned_cols=194 Identities=20% Similarity=0.266 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1257 IKSLKLQVRELNLLRESNVQLREENKYNFEECQKLREVAQKTKSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKR 1336 (2058)
Q Consensus 1257 hkeLmeKleqLNlLRESN~tLReE~~~~~~k~qkL~e~lqk~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR 1336 (2058)
-+-+-....+||.+.+.+.-.-+....+.+++.+.......++..+-..+.+|.++..+..+.+.|+.-++.+.+-.+.+
T Consensus 273 W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re 352 (1074)
T KOG0250|consen 273 WAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRRE 352 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 44566778999999999988888777766666655555555555555666666666666666777777666666666666
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHH
Q 045447 1337 VSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEA 1416 (2058)
Q Consensus 1337 ~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~ 1416 (2058)
..++=.+|+.+ --.++++|..+..|+ ..++.+++.+ .+.+..++.+....+..|+..+..+....+
T Consensus 353 ~~~~~~~~~~~-~n~i~~~k~~~d~l~-------k~I~~~~~~~------~~~~~~~~~e~e~k~~~L~~evek~e~~~~ 418 (1074)
T KOG0250|consen 353 VNDLKEEIREI-ENSIRKLKKEVDRLE-------KQIADLEKQT------NNELGSELEERENKLEQLKKEVEKLEEQIN 418 (1074)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHH-------HHHHHHHHHH------HhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555544221 123333333333333 2333222222 122333333333333333333333333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 045447 1417 ARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLKQGK 1464 (2058)
Q Consensus 1417 ~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k~~~ 1464 (2058)
.|..+++.++..+..-+.+.......+..+.+.++..+..|..+|.++
T Consensus 419 ~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k 466 (1074)
T KOG0250|consen 419 SLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTK 466 (1074)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444444444444444444444444444444455555555555555433
No 51
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.24 E-value=7e-05 Score=100.45 Aligned_cols=72 Identities=25% Similarity=0.332 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1093 QELTKTSQALASLQEQASELRKLADALKAENSELKSKWELEKSVLEKLKNEAEEKYDEVNEQNKILHSRLEALHIQL 1169 (2058)
Q Consensus 1093 qeL~k~~e~~~~lq~e~~elr~~aesak~~L~e~e~SWeeqk~~Le~Ei~el~~R~eDL~~QN~LLH~QLE~lt~Qi 1169 (2058)
.+|...+..+..|+.++..||..++.+ ...+..-+.=|..| .++.++++|+.+|..+|..|.+++-.+-.++
T Consensus 284 ~eL~~~A~~a~~LrDElD~lR~~a~r~----~klE~~ve~YKkKL-ed~~~lk~qvk~Lee~N~~l~e~~~~LEeel 355 (713)
T PF05622_consen 284 EELQAEAREARALRDELDELREKADRA----DKLENEVEKYKKKL-EDLEDLKRQVKELEEDNAVLLETKAMLEEEL 355 (713)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677778888888888877543 22222222333333 3577888999999999999888877776554
No 52
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.24 E-value=1.7 Score=58.51 Aligned_cols=104 Identities=21% Similarity=0.278 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHH--HHHHH----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 045447 700 LGKARSEIIALRSER--DKLALEAEFA--REKLD----SVMREAEHQKVEVNGVLARNVEFSQLVVDYQRKLRETSESLN 771 (2058)
Q Consensus 700 l~k~r~El~~LrsE~--~K~s~q~e~a--~ER~e----~Lq~n~e~~r~E~~sL~~rn~eLs~~~~k~e~~l~~~~e~L~ 771 (2058)
|..-|.+|+.||.-. .|..++..++ +.+|+ |..++..-+|+|+..|.+--+-|+.+.+=|-.||.++.-+|.
T Consensus 599 LSTKREQIaTLRTVLKANKqTAEvALanLKsKYE~EK~~v~etm~kLRnELK~LKEDAATFsSlRamFa~RCdEYvtQld 678 (717)
T PF09730_consen 599 LSTKREQIATLRTVLKANKQTAEVALANLKSKYENEKAMVSETMMKLRNELKALKEDAATFSSLRAMFAARCDEYVTQLD 678 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344446777776321 3444444444 34565 677788999999999999999999998888888888776655
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 772 AAQELSRKLAMEVSVLKHEKEMLSNAEQRAYDEVRSLSQ 810 (2058)
Q Consensus 772 aaeel~~~L~~E~~nLKaEK~Llk~~E~RL~~EnesL~~ 810 (2058)
+. +.+++-..-||..|.+.=..+++..-.|++
T Consensus 679 em-------qrqL~aAEdEKKTLNsLLRmAIQQKLaLTQ 710 (717)
T PF09730_consen 679 EM-------QRQLAAAEDEKKTLNSLLRMAIQQKLALTQ 710 (717)
T ss_pred HH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 334444445666555444444444434443
No 53
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.24 E-value=0.083 Score=69.39 Aligned_cols=89 Identities=13% Similarity=0.156 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 045447 1285 FEECQKLREVAQKTKSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEK--RVSELLQRCRNIDVEDYDRLKVEVRQM 1362 (2058)
Q Consensus 1285 ~~k~qkL~e~lqk~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkq--R~q~LLeKy~riDPeE~e~Lk~Eie~L 1362 (2058)
..++..++..+..+...+..+...+..++..+......+..++.+..-|+. .|---=..+... |..+..|.+.+..|
T Consensus 233 ~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~-~~~~~~l~d~i~~l 311 (562)
T PHA02562 233 KAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEG-PDRITKIKDKLKEL 311 (562)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCc-HHHHHHHHHHHHHH
Confidence 333444455554444455556666777777777777778877777777752 111001111122 88899999999888
Q ss_pred HHHHhhhhHHHH
Q 045447 1363 EEKLSGKNAEIE 1374 (2058)
Q Consensus 1363 e~~L~~~~ae~e 1374 (2058)
+.++......+.
T Consensus 312 ~~~l~~l~~~i~ 323 (562)
T PHA02562 312 QHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHH
Confidence 887766665554
No 54
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.24 E-value=1.9 Score=58.91 Aligned_cols=46 Identities=22% Similarity=0.144 Sum_probs=22.3
Q ss_pred hhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 045447 1380 LSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQ 1425 (2058)
Q Consensus 1380 l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~ 1425 (2058)
+......+...++.|.++..+....|+..+...+.+.-|..-++.+
T Consensus 1586 i~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~l 1631 (1758)
T KOG0994|consen 1586 IQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEEL 1631 (1758)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444555555555555555555555544444444333333
No 55
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.18 E-value=0.25 Score=58.49 Aligned_cols=37 Identities=32% Similarity=0.448 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 045447 226 SDVERQFSECSSSLNWNKERVRELEIKLSSLQEEFCS 262 (2058)
Q Consensus 226 ~eLqre~~E~~ssL~~sk~rv~eLe~Kl~~lqe~L~~ 262 (2058)
.+..+.+......|.+..+|+..++.++..|..+|..
T Consensus 116 ~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~ 152 (237)
T PF00261_consen 116 EEVERKLKVLEQELERAEERAEAAESKIKELEEELKS 152 (237)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH
Confidence 3333444434444444455555555555555544443
No 56
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.18 E-value=1.7 Score=57.32 Aligned_cols=201 Identities=21% Similarity=0.264 Sum_probs=114.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 045447 941 QVGKEELEKLKEEAQANREHMLQYKSIAQVNEAALKEMETVHENFRTRVEGVKKSLEDELHSLRKRVSELERENILKSEE 1020 (2058)
Q Consensus 941 ~~lk~ELe~lkeeL~~Ak~qveQYK~IAqsaEeaL~~l~~~~e~yK~e~E~~l~e~e~ei~~L~~ri~eLe~El~~~~eE 1020 (2058)
.-++++...+..+|..-++|+--..+--+..|-.+..|.++...|. ..+++.+-+|..+..++..++.+++.+-.+
T Consensus 88 riyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q----~d~ke~etelE~~~srlh~le~eLsAk~~e 163 (1265)
T KOG0976|consen 88 RIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQ----DDKKENEIEIENLNSRLHKLEDELSAKAHD 163 (1265)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhHHHHHHHHHHHhhhhHH
Confidence 4477788888888888888888888878888888888877755444 344555566677777777777777777666
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH------HHHHHhHHHHHHhhHH
Q 045447 1021 IASAAGVREDALASAREEITSLKEERSIKISQI----VNLEVQVSALKEDLEKEHERR------QAAQANYERQVILQSE 1090 (2058)
Q Consensus 1021 ~~~~~~~~e~ql~~l~~El~~Lk~E~~~~~~~~----~~~E~q~~~l~~DL~~Q~~~a------~eAQ~nYErElvLHAe 1090 (2058)
+-.... .|.....+|+.+..++..+.... ..++.....+++|+-.--++. +.-.++.-.|+|.-+.
T Consensus 164 If~~~~----~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss 239 (1265)
T KOG0976|consen 164 IFMIGE----DLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSS 239 (1265)
T ss_pred HHHHHH----HHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543332 22222333333333333333222 112333344444443311111 1122222223333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1091 TIQELTKTSQALASLQEQASELRKLADALKAENSELKSKWELEKSVLEKLKNEAEEKYDEVNE 1153 (2058)
Q Consensus 1091 ~IqeL~k~~e~~~~lq~e~~elr~~aesak~~L~e~e~SWeeqk~~Le~Ei~el~~R~eDL~~ 1153 (2058)
-.+-|+-++.....+..+-..+...+ ..+.+...-|+--...|.+|+++.+.++..++.
T Consensus 240 ~~q~ltp~rk~~s~i~E~d~~lq~sa----k~ieE~m~qlk~kns~L~~ElSqkeelVk~~qe 298 (1265)
T KOG0976|consen 240 QKQTLTPLRKTCSMIEEQDMDLQASA----KEIEEKMRQLKAKNSVLGDELSQKEELVKELQE 298 (1265)
T ss_pred hHhhhhhHhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 33444444444444443333333333 456777888999999999999999999887654
No 57
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.18 E-value=1.6 Score=56.94 Aligned_cols=49 Identities=20% Similarity=0.343 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhh
Q 045447 1321 KEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKN 1370 (2058)
Q Consensus 1321 ~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ 1370 (2058)
..+.-++.+..-+++|-..||+-|+--| ++.+.|.-.+..|++-.+...
T Consensus 904 ~~~p~~~~~ledL~qRy~a~LqmyGEk~-Ee~EELrlDl~dlK~mYk~QI 952 (961)
T KOG4673|consen 904 DRVPGIKAELEDLRQRYAAALQMYGEKD-EELEELRLDLVDLKEMYKEQI 952 (961)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhcchH-HHHHHHHhhHHHHHHHHHHHH
Confidence 3455677777889999999999997544 566667667777765444433
No 58
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.16 E-value=2.2 Score=58.13 Aligned_cols=151 Identities=25% Similarity=0.385 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 045447 1306 ENLLRERQIEIEACKKEMEKQRMEKENLEK---------RVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEET 1376 (2058)
Q Consensus 1306 e~~i~el~~elE~~~~Ei~~LqeE~~RWkq---------R~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~ 1376 (2058)
+.+|+.-+.+++.++.++..|+.-...+.. |=-.|+. .|++..+|-++...+..+.+.+.+...++...
T Consensus 683 ~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~--~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~ 760 (1174)
T KOG0933|consen 683 QKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLE--KRLEQNEFHKLLDDLKELLEEVEESEQQIKEK 760 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcChHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666777777777776665533222 2222333 25666678888888888888888888888877
Q ss_pred HhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1377 RNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQ 1456 (2058)
Q Consensus 1377 ~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q 1456 (2058)
...+..+++.+..++.++.....++ +.+++|+..++..++..++...+..+.-.+.++.+.-|.+++.++....+++
T Consensus 761 ~~~~k~~~~~i~~lE~~~~d~~~~r---e~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~ 837 (1174)
T KOG0933|consen 761 ERALKKCEDKISTLEKKMKDAKANR---ERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQ 837 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhhh---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899998888888766554 4455555555555555555555555554555555555555555555555555
Q ss_pred HHHHh
Q 045447 1457 LDDLK 1461 (2058)
Q Consensus 1457 ~~~~k 1461 (2058)
+..+.
T Consensus 838 l~~~~ 842 (1174)
T KOG0933|consen 838 LEQLE 842 (1174)
T ss_pred HHHHH
Confidence 55444
No 59
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.12 E-value=0.088 Score=59.71 Aligned_cols=136 Identities=19% Similarity=0.232 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1258 KSLKLQVRELNLLRESNVQLREENKYNFEECQKLREVAQKTKSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRV 1337 (2058)
Q Consensus 1258 keLmeKleqLNlLRESN~tLReE~~~~~~k~qkL~e~lqk~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~ 1337 (2058)
.+||-.|+ =|.-+|..|+.|+.++...+..+++.-.++.. ++..+...+.++
T Consensus 4 ~dL~~~v~---dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~--------------e~~~L~~q~~s~----------- 55 (193)
T PF14662_consen 4 SDLLSCVE---DLQLNNQKLADENAKLQRSVETAEEGNAQLAE--------------EITDLRKQLKSL----------- 55 (193)
T ss_pred hHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHH-----------
Confidence 45654454 56679999999998655444444333333332 333333334433
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHH
Q 045447 1338 SELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAA 1417 (2058)
Q Consensus 1338 q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~ 1417 (2058)
|++|++|+-++ +|++.||..+-.|++.-+.+-++.-.+++.-.+....|..|.++-.+...+++.+..++.++.....+
T Consensus 56 Qqal~~aK~l~-eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~ 134 (193)
T PF14662_consen 56 QQALQKAKALE-EELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKAT 134 (193)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHH
Confidence 47788886554 67888888888888877777777766676667777888888888888888888888888888777777
Q ss_pred HHHHH
Q 045447 1418 RKLEM 1422 (2058)
Q Consensus 1418 l~~e~ 1422 (2058)
|+-++
T Consensus 135 Lq~Ql 139 (193)
T PF14662_consen 135 LQRQL 139 (193)
T ss_pred HHHHH
Confidence 77665
No 60
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.02 E-value=0.16 Score=66.75 Aligned_cols=29 Identities=10% Similarity=0.178 Sum_probs=17.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 045447 1253 TEEEIKSLKLQVRELNLLRESNVQLREEN 1281 (2058)
Q Consensus 1253 s~e~hkeLmeKleqLNlLRESN~tLReE~ 1281 (2058)
.+....++++++--+.+|..-...+++..
T Consensus 148 ~~~er~~il~~l~~~~~~~~~~~~~k~~~ 176 (562)
T PHA02562 148 SAPARRKLVEDLLDISVLSEMDKLNKDKI 176 (562)
T ss_pred ChHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34455677777777777766544444443
No 61
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.00 E-value=0.54 Score=55.78 Aligned_cols=108 Identities=21% Similarity=0.294 Sum_probs=58.7
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhhhHHH
Q 045447 127 MELVEQKDLQHSEKGATIKAYLDKIINLTDNAAQREARLAETEAELARAQATCTRLTQGKELIERHNAWLNEELTSKVNS 206 (2058)
Q Consensus 127 l~llErk~~e~eel~e~l~~l~eKi~eL~~~~~~~e~rl~e~es~~~s~k~~e~RLeQE~eLLqknneWLe~ELk~KteE 206 (2058)
+..++.+....++.-+.| ..++.++.........+..++...+........+.+.-.+.+...+.-|+.+|+.-...
T Consensus 80 ~k~lE~r~~~~eeri~~l---E~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~ 156 (237)
T PF00261_consen 80 RKVLENREQSDEERIEEL---EQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNN 156 (237)
T ss_dssp HHHHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Confidence 344455544444433333 34444444455555666666666666666666777777777777777777777777666
Q ss_pred HHHHHHh--h-hhhHHHHHhhHHHHHHHHHHhhh
Q 045447 207 LVELRRT--H-ADLEADMSAKLSDVERQFSECSS 237 (2058)
Q Consensus 207 ll~~Rre--~-~~~e~~l~aki~eLqre~~E~~s 237 (2058)
+-.+--. + +..+..+..+|..|...+.++..
T Consensus 157 lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~ 190 (237)
T PF00261_consen 157 LKSLEASEEKASEREDEYEEKIRDLEEKLKEAEN 190 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6543332 1 11122234444445544444443
No 62
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.96 E-value=2.6 Score=55.68 Aligned_cols=163 Identities=20% Similarity=0.201 Sum_probs=82.2
Q ss_pred HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1079 ANYERQVILQSETIQELTKTSQALASLQEQASELRKLADALKAENSELKSKWELEKSVLEKLKNEAEEKYDEVNEQNKIL 1158 (2058)
Q Consensus 1079 ~nYErElvLHAe~IqeL~k~~e~~~~lq~e~~elr~~aesak~~L~e~e~SWeeqk~~Le~Ei~el~~R~eDL~~QN~LL 1158 (2058)
.-|-+-+.+|-+++. .+..++..||.....+..+.... ......++..+.+.+.+++.+ |.=|
T Consensus 88 riyRrdv~llEddlk---~~~sQiriLQn~c~~lE~ekq~l-----------Q~ti~~~q~d~ke~etelE~~---~srl 150 (1265)
T KOG0976|consen 88 RIYRRDVNLLEDDLK---HHESQIRILQNKCLRLEMEKQKL-----------QDTIQGAQDDKKENEIEIENL---NSRL 150 (1265)
T ss_pred HHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhh---HHHH
Confidence 346555566655543 33344555555444443332211 122233444444444444333 4557
Q ss_pred HHHHHHHHHHHhhhccccccccCCCCCCCCCCchhHH---HHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 045447 1159 HSRLEALHIQLTEKDGSSVRISSQSTDSNPIGDASLQ---SVISFLRNRKSIAETEVALLTTEKLRLQKQLESALKAAEN 1235 (2058)
Q Consensus 1159 H~QLE~lt~Qia~~~~~~a~~ss~s~~~~s~~~e~L~---eVI~yLRREKEIae~qlel~~qE~~RLqqQle~~qkqLdE 1235 (2058)
|.-++.|++...++.+- + ++|+ .+|+-+ .-+|.-+..|+.|+..++++..+++++
T Consensus 151 h~le~eLsAk~~eIf~~--------------~-~~L~nk~~~lt~~-------~~q~~tkl~e~~~en~~le~k~~k~~e 208 (1265)
T KOG0976|consen 151 HKLEDELSAKAHDIFMI--------------G-EDLHDKNEELNEF-------NMEFQTKLAEANREKKALEEKLEKFKE 208 (1265)
T ss_pred HHHHHHHhhhhHHHHHH--------------H-HHHhhhhhHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777654433220 0 1111 233322 356888889999999999999999988
Q ss_pred HHHHHHH---HHHhhh---hhhhcHHHHHHHHHHHHHHHHHHHhhHHHHHHhh
Q 045447 1236 AQASLTT---ERANSR---AMLLTEEEIKSLKLQVRELNLLRESNVQLREENK 1282 (2058)
Q Consensus 1236 ar~~L~~---Ere~s~---t~~~s~e~hkeLmeKleqLNlLRESN~tLReE~~ 1282 (2058)
.-..-++ ++.... ..+ ......|-.+..+|..+|-.=.+|++--.
T Consensus 209 ~~~~nD~~sle~~~~q~~tq~v--l~ev~QLss~~q~ltp~rk~~s~i~E~d~ 259 (1265)
T KOG0976|consen 209 DLIEKDQKSLELHKDQENTQKV--LKEVMQLSSQKQTLTPLRKTCSMIEEQDM 259 (1265)
T ss_pred HhhcchHHHHHHHHHHHHHHHH--HHHHHHHHHhHhhhhhHhhhhHHHHHHHH
Confidence 6543221 211110 011 01122244556666666666666665433
No 63
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.90 E-value=4.2 Score=57.12 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhhcc
Q 045447 905 AVAETKLSDMEKRIR 919 (2058)
Q Consensus 905 ~vle~rv~~Le~kL~ 919 (2058)
..++.++..|..++.
T Consensus 181 ~~~~~~~e~l~~~~~ 195 (908)
T COG0419 181 KEAKAKIEELEGQLS 195 (908)
T ss_pred HHHHHHHHHHHHHHH
Confidence 346667777777666
No 64
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.88 E-value=0.94 Score=54.90 Aligned_cols=23 Identities=13% Similarity=0.345 Sum_probs=9.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhh
Q 045447 1347 IDVEDYDRLKVEVRQMEEKLSGK 1369 (2058)
Q Consensus 1347 iDPeE~e~Lk~Eie~Le~~L~~~ 1369 (2058)
.+|++=.++-..|..|...|...
T Consensus 128 L~~e~E~~lvq~I~~L~k~le~~ 150 (294)
T COG1340 128 LTPEEERELVQKIKELRKELEDA 150 (294)
T ss_pred CChHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 65
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.82 E-value=3.5 Score=54.92 Aligned_cols=196 Identities=18% Similarity=0.202 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 045447 263 SKDAAAANEERFSTELSTVNKLVELYKESSEEWSRKAGELEGVIKALETQLAQVQNDCKEKLE-KEVSAREQLEKEAMDL 341 (2058)
Q Consensus 263 ~ke~~a~~ee~fr~EL~aq~RLaeLyke~aee~~~k~~ELe~~ikeLe~~L~q~e~~~~e~LE-kE~~~~~~lEke~~eL 341 (2058)
+.+..-.+=+.|.+|+.+..-.-..+.... ..+..+......|...++.+...|. |. .+......+.+++..+
T Consensus 283 i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~----~~l~~~~~~~~~l~~e~~~v~~sY~--L~~~e~~~~~~l~~~l~~l 356 (560)
T PF06160_consen 283 IEERIDQLYDILEKEVEAKKYVEKNLKELY----EYLEHAKEQNKELKEELERVSQSYT--LNHNELEIVRELEKQLKEL 356 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHH
Confidence 333444455678888888777666654442 2233334444555666666655553 21 2233344455555555
Q ss_pred HHHHHHHHHHHhhhhhhccccCCCCCcccccccccccccCccccccccccCCCCCCCCchHHhhhhccCCCCHHHHHHHH
Q 045447 342 KEKLEKCEAEIESSRKTNELNLLPLSSFSTETWMESFDTNNISEDNRLLVPKIPAGVSGTALAASLLRDGWSLAKIYAKY 421 (2058)
Q Consensus 342 kekl~~lE~Ele~~~~anel~~~~lsa~~~~~~~~~~~~s~~~e~~~~~~p~~~~g~s~tAaAss~~KsG~SLTqlYt~Y 421 (2058)
...+..+...+.+. ..+=+.+...+..-...|+++-..+
T Consensus 357 ~~~~~~~~~~i~~~-----------------------------------------~~~yS~i~~~l~~~~~~l~~ie~~q 395 (560)
T PF06160_consen 357 EKRYEDLEERIEEQ-----------------------------------------QVPYSEIQEELEEIEEQLEEIEEEQ 395 (560)
T ss_pred HHHHHHHHHHHHcC-----------------------------------------CcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555544333211 0001112222333345667777777
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH-------HH-cccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 422 QEAVDALRHEQLGRKESEAVLQRVLYEL-------EE-KAGII-LDERAEYERMVDAYSAINQKLQNFISEKSSLEKTIQ 492 (2058)
Q Consensus 422 ve~k~qL~~Er~en~rLq~~Ld~Iv~EL-------Ee-KAP~L-~eqR~EyErl~~~~~~Ls~~Leqa~~Erd~leke~r 492 (2058)
..+.+.|..=+..-.+....|+.|-..| +. ..|-| .....-+....+.+..+...|++.--..+.+.+.+.
T Consensus 396 ~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~ 475 (560)
T PF06160_consen 396 EEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQVPINMDEVNKQLE 475 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHH
Confidence 7776666554444444444444443333 32 67888 565666667777777776666666556666666555
Q ss_pred HHHHHHHHHHHHH
Q 045447 493 ELKADLRMRERDY 505 (2058)
Q Consensus 493 ~a~~~l~~~eREn 505 (2058)
.+..++..+....
T Consensus 476 ~a~~~v~~L~~~t 488 (560)
T PF06160_consen 476 EAEDDVETLEEKT 488 (560)
T ss_pred HHHHHHHHHHHHH
Confidence 5555444444333
No 66
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=4.2 Score=54.57 Aligned_cols=140 Identities=14% Similarity=0.124 Sum_probs=63.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 045447 1302 CDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLS 1381 (2058)
Q Consensus 1302 lepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~ 1381 (2058)
.+.++.++..|-.++......+-.|=-++++-.+-..-|.+.+ ..|-..+.+|..........+-.+...+.
T Consensus 463 ~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek--------~~l~~~i~~l~~~~~~~~~~i~~leeq~~ 534 (698)
T KOG0978|consen 463 FEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEK--------SKLEEQILTLKASVDKLELKIGKLEEQER 534 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555444444444332 23333333333222222222222233333
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1382 TKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKE 1449 (2058)
Q Consensus 1382 ~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e 1449 (2058)
..+..+..+..++....--+..+.+++.++-+...-|+.++++..+.+.+++..+..+.-++.-..+.
T Consensus 535 ~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k 602 (698)
T KOG0978|consen 535 GLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFK 602 (698)
T ss_pred HhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444555555555555555555555555555555444444333333333
No 67
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.67 E-value=5 Score=54.71 Aligned_cols=112 Identities=15% Similarity=0.148 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCCCCCchhHHHHHHHHhhhhhHHHH
Q 045447 1131 ELEKSVLEKLKNEAEEKYDEVNEQNKILHSRLEALHIQLTEKDGSSVRISSQSTDSNPIGDASLQSVISFLRNRKSIAET 1210 (2058)
Q Consensus 1131 eeqk~~Le~Ei~el~~R~eDL~~QN~LLH~QLE~lt~Qia~~~~~~a~~ss~s~~~~s~~~e~L~eVI~yLRREKEIae~ 1210 (2058)
+++-.=+..+|..+.+-+.|...|-..||.-|+.+.+....+...--.+. .+.+....-.+.+..-+..|-|++|-+-.
T Consensus 389 ~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~-~si~e~~~r~~~~~~~~~~~k~~~del~~ 467 (1200)
T KOG0964|consen 389 EERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELE-SSINETKGRMEEFDAENTELKRELDELQD 467 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44555578899999999999999999999999999877654321110110 01110011235677778888999988877
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1211 EVALLTTEKLRLQKQLESALKAAENAQASLTTE 1243 (2058)
Q Consensus 1211 qlel~~qE~~RLqqQle~~qkqLdEar~~L~~E 1243 (2058)
+---+=.|-++|++-++.....+..+...|.+-
T Consensus 468 ~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~ 500 (1200)
T KOG0964|consen 468 KRKELWREEKKLRSLIANLEEDLSRAEKNLRAT 500 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777788899998888888887777777653
No 68
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=3.7 Score=52.62 Aligned_cols=121 Identities=22% Similarity=0.322 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 045447 1100 QALASLQEQASELRKLADAL---KAENSELKSKWELEKSVLEKLKNEAEEK-------YDEVNEQNKILHSRLEALHIQL 1169 (2058)
Q Consensus 1100 e~~~~lq~e~~elr~~aesa---k~~L~e~e~SWeeqk~~Le~Ei~el~~R-------~eDL~~QN~LLH~QLE~lt~Qi 1169 (2058)
-.++.+++++...+...+.. ...+.......+.++..|..+|.+.+-| |.+|..-|--|..|.-++.
T Consensus 114 neLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR--- 190 (772)
T KOG0999|consen 114 NELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLR--- 190 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHh---
Confidence 33444444444444443332 2456666777788899999999988755 4556666655555544443
Q ss_pred hhhccccccccCCCCCCCCCCchhHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045447 1170 TEKDGSSVRISSQSTDSNPIGDASLQSVISFLRNRKSIAETEVALLTTEKLRLQKQLESALKAAENAQASLTTERAN 1246 (2058)
Q Consensus 1170 a~~~~~~a~~ss~s~~~~s~~~e~L~eVI~yLRREKEIae~qlel~~qE~~RLqqQle~~qkqLdEar~~L~~Ere~ 1246 (2058)
.+ -..-+||.--|+-|--|-+|+-.+++ |..||+- ++.++|+++...|..||+.
T Consensus 191 ----~s------------QVEyEglkheikRleEe~elln~q~e----e~~~Lk~---IAekQlEEALeTlq~EReq 244 (772)
T KOG0999|consen 191 ----QS------------QVEYEGLKHEIKRLEEETELLNSQLE----EAIRLKE---IAEKQLEEALETLQQEREQ 244 (772)
T ss_pred ----hh------------hhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHH---HHHHHHHHHHHHHHhHHHH
Confidence 10 11236777667766666666554443 5556654 6788999999999998874
No 69
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.59 E-value=8.5 Score=56.44 Aligned_cols=136 Identities=14% Similarity=0.241 Sum_probs=62.2
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHH
Q 045447 47 ITAEQTCSLLEQKFISLQEEFSKVESQNAQLQKSLDDRVNELAEVQSQKHQLHLQLIGKDGEIERLTMEVAELHKSRRQL 126 (2058)
Q Consensus 47 i~aEQ~~~~lEqk~~sl~~e~~~le~e~~eL~~~l~~~~~Ela~~q~~~~~L~~~~~~~dseverLr~ei~eLe~ekr~l 126 (2058)
..+...+...+.++..+...+..+......|+.+.+....-+. +.........++..+...+.+|..
T Consensus 296 ~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyle--------L~ee~lr~q~ei~~l~~~LeELee----- 362 (1486)
T PRK04863 296 YTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLN--------LVQTALRQQEKIERYQADLEELEE----- 362 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 3444555555556655555555555555555554432221111 100000011222233333333333
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 045447 127 MELVEQKDLQHSEKGATIKAYLDKIINLTDNAAQREARLAETEAELARAQATCTRLTQGKELIERHNAWLN 197 (2058)
Q Consensus 127 l~llErk~~e~eel~e~l~~l~eKi~eL~~~~~~~e~rl~e~es~~~s~k~~e~RLeQE~eLLqknneWLe 197 (2058)
-++.....+.++...+..+..++..+......+...+.+++......+.+...+++.+.-+.+-..|+.
T Consensus 363 --~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~ 431 (1486)
T PRK04863 363 --RLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCG 431 (1486)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333333333444444444444444444444444444444444555555555667777777777777774
No 70
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.55 E-value=5.6 Score=53.83 Aligned_cols=57 Identities=18% Similarity=0.106 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCCcceeeccCccchhhhhhHHHHHHHHHHHhhhhhhhhcCCC
Q 045447 1543 KQAVKRLSDELEKLKHTEAGLPEGTSVVQLLSGTNLDDHASSYFSAVESFERVARSVIVELGTC 1606 (2058)
Q Consensus 1543 ~~~~~~l~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1606 (2058)
+++...|++-|-+| +.|-|- .+.-|-+-|--.+-.-..++..||.+-.++|.++..-
T Consensus 595 ~~~~q~lq~al~~l-----d~P~~~--~~~~~p~~Llst~~~~s~n~~~~e~~~~~yla~~~d~ 651 (980)
T KOG0980|consen 595 ASGIQALQNALYQL-----DSPLHW--RCLTSPDFLLSTAENASVNATQFETSFNNYLADGDDA 651 (980)
T ss_pred HHHHHHHHHHHHhc-----CCCccc--CcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhh
Confidence 34455555555544 456554 3433333333334444567788888766666665443
No 71
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.52 E-value=6.9 Score=54.49 Aligned_cols=155 Identities=18% Similarity=0.244 Sum_probs=75.4
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhh
Q 045447 1291 LREVAQKTKSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKN 1370 (2058)
Q Consensus 1291 L~e~lqk~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ 1370 (2058)
+++.+.+++..+..|++.+..+.+.+..+...+..|.--..-...+ -.|..+|-+..+-++..|+.++.++.+.-
T Consensus 804 ~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~-----~~k~~~d~~~l~~~~~~ie~l~kE~e~~q 878 (1293)
T KOG0996|consen 804 LEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAA-----VLKKVVDKKRLKELEEQIEELKKEVEELQ 878 (1293)
T ss_pred HHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555556656666555555555555444444444444 23567788888888888888887665553
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHH--------HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1371 AEIEETRNLLSTKLDTISQLEQELANSRLELS--------EKEKRLSDISQAEAARKLEMEKQKRISAQLRRKCEMLSKE 1442 (2058)
Q Consensus 1371 ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~--------~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e 1442 (2058)
.+. .+..+|..|+.++.+++.++- .+-.++.-+.+.++.+..-+....+.++.+...+..+..+
T Consensus 879 e~~--------~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~ 950 (1293)
T KOG0996|consen 879 EKA--------AKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELERE 950 (1293)
T ss_pred Hhh--------hHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHH
Confidence 111 113444445555544444332 2222333333333333333333333444444444444444
Q ss_pred HHHHHHHHHHHHHHHH
Q 045447 1443 KEESIKENQSLARQLD 1458 (2058)
Q Consensus 1443 ~~e~~~e~~~l~~q~~ 1458 (2058)
+..+.+++..|...+.
T Consensus 951 ~~~~e~e~~~L~e~~~ 966 (1293)
T KOG0996|consen 951 IEDTEKELDDLTEELK 966 (1293)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4444444444444433
No 72
>PRK11637 AmiB activator; Provisional
Probab=96.51 E-value=0.69 Score=59.30 Aligned_cols=10 Identities=40% Similarity=0.421 Sum_probs=5.6
Q ss_pred HHHHhhHHHH
Q 045447 1083 RQVILQSETI 1092 (2058)
Q Consensus 1083 rElvLHAe~I 1092 (2058)
=+|++.+.+.
T Consensus 142 l~vLl~a~~~ 151 (428)
T PRK11637 142 LQLILSGEES 151 (428)
T ss_pred HHHHhcCCCh
Confidence 3566666544
No 73
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.49 E-value=7.7 Score=54.65 Aligned_cols=53 Identities=25% Similarity=0.288 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1060 VSALKEDLEKEHERRQAAQANYERQVILQSETIQELTKTSQALASLQEQASEL 1112 (2058)
Q Consensus 1060 ~~~l~~DL~~Q~~~a~eAQ~nYErElvLHAe~IqeL~k~~e~~~~lq~e~~el 1112 (2058)
+..+...+.........++..|..-...++.-...|......+..+...+..+
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 443 (908)
T COG0419 391 IQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQL 443 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444445555555433333444444555444554444444443
No 74
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.44 E-value=6.5 Score=53.30 Aligned_cols=83 Identities=24% Similarity=0.270 Sum_probs=53.7
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH-
Q 045447 1372 EIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEME-----------KQKRISAQLRRKCEML- 1439 (2058)
Q Consensus 1372 e~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e-----------~~~~~~~~~k~~~e~~- 1439 (2058)
++-.++.+|++++.+|..||.=|..= ...+-..+++||.-|+ +++..|+++|..+..|
T Consensus 591 qilKLKSLLSTKREQIaTLRTVLKAN----------KqTAEvALanLKsKYE~EK~~v~etm~kLRnELK~LKEDAATFs 660 (717)
T PF09730_consen 591 QILKLKSLLSTKREQIATLRTVLKAN----------KQTAEVALANLKSKYENEKAMVSETMMKLRNELKALKEDAATFS 660 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446677777777777777655331 1111123445554444 7778888888766665
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHhccc
Q 045447 1440 ------SKEKEESIKENQSLARQLDDLKQGK 1464 (2058)
Q Consensus 1440 ------~~e~~e~~~e~~~l~~q~~~~k~~~ 1464 (2058)
..-|.+...++..|+.|+.+...-+
T Consensus 661 SlRamFa~RCdEYvtQldemqrqL~aAEdEK 691 (717)
T PF09730_consen 661 SLRAMFAARCDEYVTQLDEMQRQLAAAEDEK 691 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4788888888888888888766533
No 75
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.35 E-value=0.22 Score=54.79 Aligned_cols=136 Identities=15% Similarity=0.178 Sum_probs=98.1
Q ss_pred HHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHhh
Q 045447 1198 ISFLRNRKSIAETEVALLTTEKLRLQKQLESALKAAENAQASL---TTERANSRAMLLTEEEIKSLKLQVRELNLLRESN 1274 (2058)
Q Consensus 1198 I~yLRREKEIae~qlel~~qE~~RLqqQle~~qkqLdEar~~L---~~Ere~s~t~~~s~e~hkeLmeKleqLNlLRESN 1274 (2058)
+.-||-|+|-+..+++.+....+-|.++..-....+..++-++ ..+.+... .+|.+++-.-+-+
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~-------------~~l~~~k~~lee~ 68 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLE-------------EQLKEAKEKLEES 68 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhH
Confidence 4568999999999999888888887776654444444333333 22333332 2222222222222
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 045447 1275 VQLREENKYNFEECQKLREVAQKTKSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRN 1346 (2058)
Q Consensus 1275 ~tLReE~~~~~~k~qkL~e~lqk~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~r 1346 (2058)
-...-.+..+..+++-|++.+..+...+.+....+++.....+.+...+..|..+++.|..|...|-.||..
T Consensus 69 ~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 69 EKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred HHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 222233336778999999999999999999999999999999999999999999999999999999999963
No 76
>PRK11637 AmiB activator; Provisional
Probab=96.24 E-value=2.2 Score=54.91 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045447 1221 RLQKQLESALKAAENAQASL 1240 (2058)
Q Consensus 1221 RLqqQle~~qkqLdEar~~L 1240 (2058)
-++.++...++++++....+
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i 63 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSV 63 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 45555555555554444444
No 77
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.09 E-value=2.6 Score=48.81 Aligned_cols=69 Identities=14% Similarity=0.292 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 045447 845 KQVEREWAEAKKELQEERDNVRLLTSDREQTLKNAVKQVEEMGKELATALRAVASAETRAAVAETKLSDMEKRIRP 920 (2058)
Q Consensus 845 e~LE~Els~lKkrL~eE~e~~r~L~~~re~~~~e~qkrid~l~~El~~~~eal~~aetr~~vle~rv~~Le~kL~~ 920 (2058)
+.|...++.+..+|......+..|..+-+...+.|.+++-...+-...+ ......+...|..|..+|..
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~-------~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEA-------QEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666655566665555555566666665443333333 33344455555666555543
No 78
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.01 E-value=8.7 Score=50.60 Aligned_cols=51 Identities=10% Similarity=0.156 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1106 QEQASELRKLADALKAENSELKSKWELEKSVLEKLKNEAEEKYDEVNEQNK 1156 (2058)
Q Consensus 1106 q~e~~elr~~aesak~~L~e~e~SWeeqk~~Le~Ei~el~~R~eDL~~QN~ 1156 (2058)
+++...|..+..-.+..|...+.+..-+..+|..||.++++|+....-=|.
T Consensus 579 r~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~e 629 (961)
T KOG4673|consen 579 RERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCE 629 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555666666667777888888877776655544443
No 79
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.00 E-value=1 Score=52.01 Aligned_cols=153 Identities=24% Similarity=0.289 Sum_probs=81.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCH---HHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 045447 1301 DCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDV---EDYDRLKVEVRQMEEKLSGKNAEIEETR 1377 (2058)
Q Consensus 1301 elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDP---eE~e~Lk~Eie~Le~~L~~~~ae~e~~~ 1377 (2058)
++-.|.+.|.+++..++.+..|+..|+. .+.|-..-|.+|.+.+- .=+.+..++|..|+..|+......-.+.
T Consensus 13 ki~~L~n~l~elq~~l~~l~~ENk~Lk~----lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~ 88 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQELRKENKTLKQ----LQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELE 88 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888899999999999999988874 44444445788876553 3344444555555554444444433344
Q ss_pred hhhhhhhhHHHHHHHHHHhhHH--------HHHHH-------HHHhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 045447 1378 NLLSTKLDTISQLEQELANSRL--------ELSEK-------EKRLSDISQAEAARKLEME----KQKRISAQLRRKCEM 1438 (2058)
Q Consensus 1378 ~~l~~~~~~~~~l~~~L~~~~~--------e~~~l-------e~k~~d~~~~~~~l~~e~e----~~~~~~~~~k~~~e~ 1438 (2058)
..+......+..+++.+..... ++.+| +.++.+.......|...++ ..+..+..++.+...
T Consensus 89 ~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~ 168 (194)
T PF15619_consen 89 RKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKE 168 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4444444444444433333111 22333 3333333333333333333 455555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 045447 1439 LSKEKEESIKENQSLARQL 1457 (2058)
Q Consensus 1439 ~~~e~~e~~~e~~~l~~q~ 1457 (2058)
+..++..+..++..|...|
T Consensus 169 ~~~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 169 AQEEVKSLQEEIQRLNQKL 187 (194)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555444
No 80
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.95 E-value=7.5 Score=49.35 Aligned_cols=72 Identities=19% Similarity=0.332 Sum_probs=57.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 045447 1299 KSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEE 1375 (2058)
Q Consensus 1299 ~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~ 1375 (2058)
+.+.+.--..+..++.+++.++.||+.|++-+|-++.- |.|. +|+|++++.+-.|.++|..+|....-+...
T Consensus 322 k~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q----~~kq-~Is~e~fe~mn~Ere~L~reL~~i~~~~~~ 393 (622)
T COG5185 322 KQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQ----LRKQ-GISTEQFELMNQEREKLTRELDKINIQSDK 393 (622)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----HHhc-CCCHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 33445555667888889999999999999999998875 5665 999999999999999999877665544443
No 81
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.93 E-value=5.8 Score=52.73 Aligned_cols=101 Identities=17% Similarity=0.198 Sum_probs=53.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 045447 1301 DCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLL 1380 (2058)
Q Consensus 1301 elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l 1380 (2058)
++....-.|..-..+|+.....+.+...+++..++|++.+=+|-.+.-|+- ..|-..+-+.+..+.........+++..
T Consensus 459 kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ek-q~l~~qlkq~q~a~~~~~~~~s~L~aa~ 537 (1118)
T KOG1029|consen 459 KLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEK-QELNHQLKQKQSAHKETTQRKSELEAAR 537 (1118)
T ss_pred hhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHhhhhccCcchHHHHHHHHH
Confidence 333344444444555666666666667777788888888777776666642 2233333333333333333333344444
Q ss_pred hhhhhHHHHHHHHHHhhHHHHH
Q 045447 1381 STKLDTISQLEQELANSRLELS 1402 (2058)
Q Consensus 1381 ~~~~~~~~~l~~~L~~~~~e~~ 1402 (2058)
..++--.+.+++.|.++-+|..
T Consensus 538 ~~ke~irq~ikdqldelskE~e 559 (1118)
T KOG1029|consen 538 RKKELIRQAIKDQLDELSKETE 559 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555544443
No 82
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.88 E-value=5.4 Score=53.48 Aligned_cols=36 Identities=17% Similarity=0.285 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1131 ELEKSVLEKLKNEAEEKYDEVNEQNKILHSRLEALH 1166 (2058)
Q Consensus 1131 eeqk~~Le~Ei~el~~R~eDL~~QN~LLH~QLE~lt 1166 (2058)
..+...|+.++.+...-..-|..|+.+|..||..++
T Consensus 684 ~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~ 719 (970)
T KOG0946|consen 684 QVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIIS 719 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 344455556666666666666667777776666554
No 83
>PF13514 AAA_27: AAA domain
Probab=95.87 E-value=16 Score=52.61 Aligned_cols=165 Identities=25% Similarity=0.286 Sum_probs=73.3
Q ss_pred hhHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHHHHHHHHH
Q 045447 1192 ASLQSVISFLRNRKSIAETEVALLTTEKLRLQKQLESALKAAENAQASLTTERANSRAMLLTEEEIKSLKLQVRELNLLR 1271 (2058)
Q Consensus 1192 e~L~eVI~yLRREKEIae~qlel~~qE~~RLqqQle~~qkqLdEar~~L~~Ere~s~t~~~s~e~hkeLmeKleqLNlLR 1271 (2058)
+.+..+-.+|-+.++.. .++.-+......++.+++.+...+...+..+..-...+ .+.+.+....+..+..+..-++
T Consensus 784 ~~~~~L~~~l~~a~~~~-~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~a--~~~~~e~l~~~~~~~~~~~~l~ 860 (1111)
T PF13514_consen 784 EALEALRARLEEAREAQ-EERERLQEQLEELEEELEQAEEELEELEAELAELLEQA--GVEDEEELREAEERAEERRELR 860 (1111)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHH
Confidence 45555666666655442 34444555555666666665555555555554433222 2222233333322222222221
Q ss_pred Hh----hHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 045447 1272 ES----NVQLREENKYNFEECQKLREVAQKTKSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNI 1347 (2058)
Q Consensus 1272 ES----N~tLReE~~~~~~k~qkL~e~lqk~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~ri 1347 (2058)
.- ...|....... ....+...+.. .....+...+..+...++.+..++..+..++...+.+...|-. -
T Consensus 861 ~~~~~~~~~l~~~~~~~--~~~~l~~e~~~--~d~~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~----~ 932 (1111)
T PF13514_consen 861 EELEDLERQLERQADGL--DLEELEEELEE--LDPDELEAELEELEEELEELEEELEELQEERAELEQELEALEG----D 932 (1111)
T ss_pred HHHHHHHHHHHhhcCcc--cHHHHHHHhhc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----C
Confidence 11 11111111100 01111111110 1233455566666666666666666666666666666555422 1
Q ss_pred CHHHHHHHHHHHHHHHHHHhhh
Q 045447 1348 DVEDYDRLKVEVRQMEEKLSGK 1369 (2058)
Q Consensus 1348 DPeE~e~Lk~Eie~Le~~L~~~ 1369 (2058)
..+..+..+++.+..++...
T Consensus 933 --~~~a~l~~e~e~~~a~l~~~ 952 (1111)
T PF13514_consen 933 --DDAAELEQEREEAEAELEEL 952 (1111)
T ss_pred --chHHHHHHHHHHHHHHHHHH
Confidence 24455556666555544433
No 84
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.76 E-value=15 Score=51.52 Aligned_cols=65 Identities=37% Similarity=0.435 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hhcHHHHHHHHHHHHHH-HHHHHhhHHHHHHhh
Q 045447 1213 ALLTTEKLRLQKQLESALKAAENAQASLTTERANSRAM----LLTEEEIKSLKLQVREL-NLLRESNVQLREENK 1282 (2058)
Q Consensus 1213 el~~qE~~RLqqQle~~qkqLdEar~~L~~Ere~s~t~----~~s~e~hkeLmeKleqL-NlLRESN~tLReE~~ 1282 (2058)
++...+...|+++|+..-. .+..+..+.. ++.. -....+.+++++.+.++ --+-+=|..||-.+.
T Consensus 752 ~~~~~~vl~Lq~~LEqe~~----~r~~~~~eLs-sq~~~~~t~~~Ekq~~~~~~~l~~~K~~~e~~~~q~~~~~~ 821 (1317)
T KOG0612|consen 752 DQLITEVLKLQSMLEQEIS----KRLSLQRELK-SQEQEVNTKMLEKQLKKLLDELAELKKQLEEENAQLRGLNR 821 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHH----HhhhhHHHhh-hHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3455677778887764322 2222322222 1111 11245556666555555 444555666665443
No 85
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.75 E-value=12 Score=50.10 Aligned_cols=150 Identities=24% Similarity=0.315 Sum_probs=84.2
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHH---Hhh--hhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhH
Q 045447 1337 VSELLQRCRNIDVEDYDRLKVEVRQMEEK---LSG--KNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDI 1411 (2058)
Q Consensus 1337 ~q~LLeKy~riDPeE~e~Lk~Eie~Le~~---L~~--~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~ 1411 (2058)
+=.|+......=|..+..|+.-...|..+ +.. ...++..+...+......+.+| ++..+......+..+|..+
T Consensus 213 IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l--~l~~~~~~~~~i~~~Id~l 290 (560)
T PF06160_consen 213 IPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNL--ELDEVEEENEEIEERIDQL 290 (560)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHH
Confidence 33445555555678888888777777761 211 2233333333333333333333 4445555555666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcchhHHHHhhhhhhhHHHHHHH
Q 045447 1412 SQAEAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLKQGKKSTGDVTGEQVMKEKEEKDTRIQILER 1491 (2058)
Q Consensus 1412 ~~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k~~~~~~~~~~~~q~~ke~~~~~~~~~~~~~ 1491 (2058)
-..+..|++.....-..++ .+..-+..+...+..|...++.++++=.-+.. -.+.+.. =..+|..+.+
T Consensus 291 ---Yd~le~E~~Ak~~V~~~~~----~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~-e~~~~~~----l~~~l~~l~~ 358 (560)
T PF06160_consen 291 ---YDILEKEVEAKKYVEKNLK----ELYEYLEHAKEQNKELKEELERVSQSYTLNHN-ELEIVRE----LEKQLKELEK 358 (560)
T ss_pred ---HHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCch-HHHHHHH----HHHHHHHHHH
Confidence 6666777776655555554 55566777777888888888888876544432 1111111 2355666666
Q ss_pred HHHHHHHHH
Q 045447 1492 TVERQREEL 1500 (2058)
Q Consensus 1492 ~~e~~~~~~ 1500 (2058)
.++.+.+.+
T Consensus 359 ~~~~~~~~i 367 (560)
T PF06160_consen 359 RYEDLEERI 367 (560)
T ss_pred HHHHHHHHH
Confidence 666555433
No 86
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.74 E-value=9.2 Score=52.17 Aligned_cols=37 Identities=16% Similarity=0.280 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 878 NAVKQVEEMGKELATALRAVASAETRAAVAETKLSDM 914 (2058)
Q Consensus 878 e~qkrid~l~~El~~~~eal~~aetr~~vle~rv~~L 914 (2058)
.++.|.-+|..|+...+..|..++.+...++..+..|
T Consensus 542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~l 578 (697)
T PF09726_consen 542 SCRQRRRQLESELKKLRRELKQKEEQIRELESELQEL 578 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777766666665555555433
No 87
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.60 E-value=12 Score=49.29 Aligned_cols=137 Identities=21% Similarity=0.269 Sum_probs=75.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Q 045447 1021 IASAAGVREDALASAREEITSLKEERSIKISQIVNLEVQVSALKEDLEKEHERRQAAQANYERQVILQSETIQELTKTSQ 1100 (2058)
Q Consensus 1021 ~~~~~~~~e~ql~~l~~El~~Lk~E~~~~~~~~~~~E~q~~~l~~DL~~Q~~~a~eAQ~nYErElvLHAe~IqeL~k~~e 1100 (2058)
+......+.+.+....+++.-+-.++......+..++.+...+++.+...-.-...+ .+.+|.. ...
T Consensus 219 l~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~----------~~~~i~~---~~~ 285 (629)
T KOG0963|consen 219 LFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLA----------KIDDIDA---LGS 285 (629)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc----------cCCchHH---HHH
Confidence 333333345555666666766666777777777666666666655544322211111 1222222 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhc
Q 045447 1101 ALASLQEQASELRKLADALKAENSELKSKWELEKSVLEKLKNEAEEKYDEVNEQ--NKILHSRLEALHIQLTEKD 1173 (2058)
Q Consensus 1101 ~~~~lq~e~~elr~~aesak~~L~e~e~SWeeqk~~Le~Ei~el~~R~eDL~~Q--N~LLH~QLE~lt~Qia~~~ 1173 (2058)
.+...-..+..|-......++.+.....+|..+-..|+.++.....-+++|..+ +. +--+.+...+..+.
T Consensus 286 ~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~---sDYeeIK~ELsiLk 357 (629)
T KOG0963|consen 286 VLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR---SDYEEIKKELSILK 357 (629)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---ccHHHHHHHHHHHH
Confidence 222333456666666666677778888888888888888777666555554332 11 12455555555543
No 88
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.56 E-value=1.5 Score=52.18 Aligned_cols=113 Identities=17% Similarity=0.286 Sum_probs=77.5
Q ss_pred HHhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHH
Q 045447 1279 EENKYNFEECQKLREVAQKTKSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRN-IDVEDYDRLKV 1357 (2058)
Q Consensus 1279 eE~~~~~~k~qkL~e~lqk~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~r-iDPeE~e~Lk~ 1357 (2058)
-+..++..+.......+.+++++++.+...+-.++.+++.++.++..++.+..-.+.|...+=.+.+. .|-.+|..|..
T Consensus 17 ~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~ 96 (239)
T COG1579 17 LEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNI 96 (239)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 33333333344456667777788888888888888899999999998888887777766555555444 57789999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHH
Q 045447 1358 EVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLE 1391 (2058)
Q Consensus 1358 Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~ 1391 (2058)
++..++.....+..++.++..........+..++
T Consensus 97 E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~ 130 (239)
T COG1579 97 EIQIAKERINSLEDELAELMEEIEKLEKEIEDLK 130 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988776666666544444433333333333
No 89
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.50 E-value=13 Score=48.80 Aligned_cols=77 Identities=22% Similarity=0.184 Sum_probs=64.9
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 045447 938 VQLQVGKEELEKLKEEAQANREHMLQYKSIAQVNEAALKEMETVHENFRTRVEGVKKSLEDELHSLRKRVSELEREN 1014 (2058)
Q Consensus 938 ~eL~~lk~ELe~lkeeL~~Ak~qveQYK~IAqsaEeaL~~l~~~~e~yK~e~E~~l~e~e~ei~~L~~ri~eLe~El 1014 (2058)
.++.+...++..|...+..-..-++.-+.+--..+..|+.+..-++..|.+.+........++..|...+..++-.+
T Consensus 432 ~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~ 508 (581)
T KOG0995|consen 432 EELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVL 508 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777788888888888888888888888999999999999999999999999999999998888887766544
No 90
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.49 E-value=14 Score=49.31 Aligned_cols=47 Identities=30% Similarity=0.433 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHhhHHH
Q 045447 1042 LKEERSIKISQIVNLEVQVSALKEDLEKEHERRQAAQANYE--RQVILQSET 1091 (2058)
Q Consensus 1042 Lk~E~~~~~~~~~~~E~q~~~l~~DL~~Q~~~a~eAQ~nYE--rElvLHAe~ 1091 (2058)
|-.|...+...+..+..++..++.|+.+|.- ..++-|. +++..|+++
T Consensus 554 lskE~esk~~eidi~n~qlkelk~~~~~q~l---ake~~yk~e~d~~ke~et 602 (1118)
T KOG1029|consen 554 LSKETESKLNEIDIFNNQLKELKEDVNSQQL---AKEELYKNERDKLKEAET 602 (1118)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3333344444444455556666666665443 2244454 446666643
No 91
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.47 E-value=15 Score=49.36 Aligned_cols=124 Identities=15% Similarity=0.193 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH----HH
Q 045447 90 EVQSQKHQLHLQLIGKDGEIERLTMEVAELHKS---RRQLMELVEQKDLQHSEKGATIKAYLDKIINLTDNAAQ----RE 162 (2058)
Q Consensus 90 ~~q~~~~~L~~~~~~~dseverLr~ei~eLe~e---kr~ll~llErk~~e~eel~e~l~~l~eKi~eL~~~~~~----~e 162 (2058)
.+.+++..+......-..+++..+.+..+++.+ +..++.++..-..-+..|+.-+..-..++++|...-.. +.
T Consensus 346 ~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~ 425 (594)
T PF05667_consen 346 ELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQRLVELAQQWEKHRAPLI 425 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 333333333333333334444444444444443 34566666666677777777777777777777643222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHh
Q 045447 163 ARLAETEAELARAQATCTRLTQGKELIERHNAWLNEELTSKVNSLVELRRT 213 (2058)
Q Consensus 163 ~rl~e~es~~~s~k~~e~RLeQE~eLLqknneWLe~ELk~KteEll~~Rre 213 (2058)
..+..+......-....++.-+++..++....-+..|+..|.+.+-.+..+
T Consensus 426 ~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e 476 (594)
T PF05667_consen 426 EEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKE 476 (594)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333345566666777777777777777776666555554
No 92
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.44 E-value=18 Score=50.21 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=26.1
Q ss_pred cccchHHHHHHhHHHHHHHHHhHHHHHHH
Q 045447 568 TFKDINGLVEQNVQLRSLVRNLSDQIESR 596 (2058)
Q Consensus 568 tFkdI~ELQeQNqeLL~vvReLs~klE~e 596 (2058)
+=+++..||.---.|+.++++|.++++.-
T Consensus 1265 a~~~LesLq~~~~~l~~~~keL~e~~~~i 1293 (1758)
T KOG0994|consen 1265 AGKDLESLQREFNGLLTTYKELREQLEKI 1293 (1758)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55889999999999999999999999975
No 93
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=95.43 E-value=15 Score=49.13 Aligned_cols=429 Identities=19% Similarity=0.256 Sum_probs=195.0
Q ss_pred HHHHHHHHHHhhcccccCCccccCCCCCCc-hhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-H---------HHHHH
Q 045447 906 VAETKLSDMEKRIRPLDAKGDEVDDGSRPS-DEVQLQVGKEELEKLKEEAQANREHMLQYKSIA-Q---------VNEAA 974 (2058)
Q Consensus 906 vle~rv~~Le~kL~~~~~k~~s~~~~~~~s-~E~eL~~lk~ELe~lkeeL~~Ak~qveQYK~IA-q---------saEea 974 (2058)
.+..++..|+..|.+...+...-. .... .-.+...|+.+|...+.+|++--.-|++.+.-. + .-+-.
T Consensus 166 sL~~k~~~Le~~L~~le~~r~~e~--~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~E 243 (739)
T PF07111_consen 166 SLTSKAEELEKSLESLETRRAGEA--KELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPE 243 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHHHH
Confidence 455556666666655543321100 0000 002234455556666666665555566666533 1 11222
Q ss_pred HHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh---hHHHHHHH-HHHHHHHHH-------
Q 045447 975 LKEMETVHENFRTRVEGVKKSLEDELHSLRKRVSELERENILKSEEIASAAG---VREDALAS-AREEITSLK------- 1043 (2058)
Q Consensus 975 L~~l~~~~e~yK~e~E~~l~e~e~ei~~L~~ri~eLe~El~~~~eE~~~~~~---~~e~ql~~-l~~El~~Lk------- 1043 (2058)
=..|.++...++ .....+...+.-|+=||.-|..-+....+++...+. .++..... ...=|..++
T Consensus 244 r~~L~~tVq~L~----edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFaLm 319 (739)
T PF07111_consen 244 REELLETVQHLQ----EDRDALQATAELLQVRVQSLTDILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFALM 319 (739)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 233444443333 223455556667777888888777777777644332 00000000 011122222
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHhHHHHHHhhHHHH-HHHHHHHHHHHHHHHHH
Q 045447 1044 ----EERSIKISQIVNLEVQVSALKEDLEKEHER---------RQAAQANYERQVILQSETI-QELTKTSQALASLQEQA 1109 (2058)
Q Consensus 1044 ----~E~~~~~~~~~~~E~q~~~l~~DL~~Q~~~---------a~eAQ~nYErElvLHAe~I-qeL~k~~e~~~~lq~e~ 1109 (2058)
.....+...+..+..++..|++.+.++... -+.|.-..|| .|+.+| .+|.........++++.
T Consensus 320 VQLkaQeleh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevER---v~sktLQ~ELsrAqea~~~lqqq~ 396 (739)
T PF07111_consen 320 VQLKAQELEHRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVER---VGSKTLQAELSRAQEARRRLQQQT 396 (739)
T ss_pred HHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 222233333444555555555555443221 2445555554 345444 23333322222333322
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhccccccccCCCCCC
Q 045447 1110 SELRKLADALKAENSELKSKWELEKSVLEKLKNEAEEKYDEVNEQNKIL---HSRLEALHIQLTEKDGSSVRISSQSTDS 1186 (2058)
Q Consensus 1110 ~elr~~aesak~~L~e~e~SWeeqk~~Le~Ei~el~~R~eDL~~QN~LL---H~QLE~lt~Qia~~~~~~a~~ss~s~~~ 1186 (2058)
...-...-.. ...-.+-..| |...+..++.-...|..-|.-| -..+..+...++.+..- +..-..+.++
T Consensus 397 ~~aee~Lk~v-~eav~S~q~~------L~s~ma~ve~a~aRL~sL~~RlSyAvrrv~tiqGL~Ark~Al-aqlrqe~~~~ 468 (739)
T PF07111_consen 397 ASAEEQLKLV-SEAVSSSQQW------LESQMAKVEQALARLPSLSNRLSYAVRRVHTIQGLMARKLAL-AQLRQEQCPP 468 (739)
T ss_pred HHHHHHHHHH-HHHHHHHHHH------HHHHHHHHHHHHHHHHHHhHHHHHHhcccchhHHHHHHHHHH-HHHHhccCCC
Confidence 1111110000 0111122234 4444444444333333322222 23344443333321100 0000011111
Q ss_pred CCCCchhHHHHHHHHhhhhhHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHH
Q 045447 1187 NPIGDASLQSVISFLRNRKSIAETEVALL----TTEKLRLQKQLESALKAAENAQASLTTERANSRAMLLTEEEIKSLKL 1262 (2058)
Q Consensus 1187 ~s~~~e~L~eVI~yLRREKEIae~qlel~----~qE~~RLqqQle~~qkqLdEar~~L~~Ere~s~t~~~s~e~hkeLme 1262 (2058)
......+|.-=+.-||-|+|-+++++.++ +++..|-+-+.++....|-+....|.+........+. .+..
T Consensus 469 ~pp~~~dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la------~l~~ 542 (739)
T PF07111_consen 469 SPPSVTDLSLELQQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLA------ELEE 542 (739)
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH
Confidence 23355788888999999999999987644 6787788877777777777777777665443322222 2222
Q ss_pred H----HHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH-----------HHHHH
Q 045447 1263 Q----VRELNLLRESNVQLREENKYNFEECQKLREVAQKTKSDCDNLENLLRERQIEIEACKKE-----------MEKQR 1327 (2058)
Q Consensus 1263 K----leqLNlLRESN~tLReE~~~~~~k~qkL~e~lqk~~~elepLe~~i~el~~elE~~~~E-----------i~~Lq 1327 (2058)
+ -..+-.-+++=..||-|..+......+ . ++.++..+++.+++-=+++|..=.+ +..++
T Consensus 543 QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y~~---a---lqekvsevEsrl~E~L~~~E~rLNeARREHtKaVVsLRQ~q 616 (739)
T PF07111_consen 543 QLEAARKSLQESTEEAAELRRELTQQQEVYER---A---LQEKVSEVESRLREQLSEMEKRLNEARREHTKAVVSLRQIQ 616 (739)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 234556788888999998654422221 1 1112333333332222222221111 23344
Q ss_pred HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 045447 1328 MEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQME 1363 (2058)
Q Consensus 1328 eE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le 1363 (2058)
--..|=|.|.+.++.-.+..--++..+|...+..|+
T Consensus 617 rqa~reKer~~E~~~lq~e~~~~e~~rl~~rlqele 652 (739)
T PF07111_consen 617 RQAAREKERNQELRRLQEEARKEEGQRLTQRLQELE 652 (739)
T ss_pred HHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444666778887776554444445555555544443
No 94
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.43 E-value=8 Score=51.98 Aligned_cols=107 Identities=19% Similarity=0.199 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 045447 20 VAAKADAYIRYLQTDFETVKARADAAAITAEQTCSLLEQKFISLQEEFSKVESQNAQLQKSLD---DRVNELAEVQSQKH 96 (2058)
Q Consensus 20 i~~K~e~~i~~l~~el~t~KA~~e~~~i~aEQ~~~~lEqk~~sl~~e~~~le~e~~eL~~~l~---~~~~Ela~~q~~~~ 96 (2058)
|+.|+-..|+.+..+++.+|-...+.. .....++.+|-...+.++.++.++.-|+.+|. ....++ .
T Consensus 658 ~~~kyK~lI~~lD~~~e~lkQ~~~~l~----~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~-------~ 726 (970)
T KOG0946|consen 658 IQQKYKGLIRELDYQIENLKQMEKELQ----VENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDL-------L 726 (970)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhH-------H
Confidence 456666667776666666666444443 33334667777777777777888877777664 111211 1
Q ss_pred HHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 045447 97 QLHLQLIGKDGEIERLTMEVAELHKSRRQLMELVEQKDLQH 137 (2058)
Q Consensus 97 ~L~~~~~~~dseverLr~ei~eLe~ekr~ll~llErk~~e~ 137 (2058)
+........+.++.+++.++..+....-.+..-++.+++-+
T Consensus 727 q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~ 767 (970)
T KOG0946|consen 727 QGAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADI 767 (970)
T ss_pred hHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 21112334455666666666666654444444444443333
No 95
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=95.32 E-value=5.3 Score=50.72 Aligned_cols=184 Identities=22% Similarity=0.302 Sum_probs=108.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhhhHHHHH--HHHH--
Q 045447 137 HSEKGATIKAYLDKIINLTDNAAQREARLAETEAELARAQATCTRLTQGKELIERHNAWLNEELTSKVNSLV--ELRR-- 212 (2058)
Q Consensus 137 ~eel~e~l~~l~eKi~eL~~~~~~~e~rl~e~es~~~s~k~~e~RLeQE~eLLqknneWLe~ELk~KteEll--~~Rr-- 212 (2058)
+-.|..+-+.++-+|..|.-...-++.++.+++.+.+..+ .=++ .-+.|+.+.++|. +||=
T Consensus 319 L~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQq-------vfvD--------iinkLk~niEeLIedKY~viL 383 (527)
T PF15066_consen 319 LQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQ-------VFVD--------IINKLKENIEELIEDKYRVIL 383 (527)
T ss_pred HHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhh-------HHHH--------HHHHHHHHHHHHHHhHhHhhh
Confidence 3445556666666777777667777777777665542111 1111 3467888888887 4443
Q ss_pred hhhhhHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045447 213 THADLEADMSAKLSDVERQFSECSSSLNWNKERVRELEIKLSSLQEEFCSSKDAAAANEERFSTELSTVNKLVELYKESS 292 (2058)
Q Consensus 213 e~~~~e~~l~aki~eLqre~~E~~ssL~~sk~rv~eLe~Kl~~lqe~L~~~ke~~a~~ee~fr~EL~aq~RLaeLyke~a 292 (2058)
++.+ ..+-+.-+...|..+++.+.+-...-..|+-+|+.+|-.+....++|-.||.-++|-+..|-++.
T Consensus 384 EKnd-----------~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmd 452 (527)
T PF15066_consen 384 EKND-----------IEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMD 452 (527)
T ss_pred hhhh-----------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 2221 12222223333444455555544444566667888889999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 293 EEWSRKAGELEGVIKALETQLAQVQNDCKEKLEKEVSAREQLEKEAMDLKEKLEKCEA 350 (2058)
Q Consensus 293 ee~~~k~~ELe~~ikeLe~~L~q~e~~~~e~LEkE~~~~~~lEke~~eLkekl~~lE~ 350 (2058)
....+|-.|++ ++.-|...|+.+...+-+.|-+| ++..+++.-.|++.+++-++
T Consensus 453 k~LskKeeeve-rLQ~lkgelEkat~SALdlLkrE---Ke~~EqefLslqeEfQk~ek 506 (527)
T PF15066_consen 453 KTLSKKEEEVE-RLQQLKGELEKATTSALDLLKRE---KETREQEFLSLQEEFQKHEK 506 (527)
T ss_pred HHhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 99999888874 23333333333322222223222 22334444455555555444
No 96
>PRK11281 hypothetical protein; Provisional
Probab=95.32 E-value=11 Score=53.93 Aligned_cols=152 Identities=13% Similarity=0.155 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhH
Q 045447 1308 LLRERQIEIEACKKEMEKQRMEKENLEKRVSELL-QRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDT 1386 (2058)
Q Consensus 1308 ~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LL-eKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~ 1386 (2058)
+...++..+....+++...+.+.++.++...... ..|......+ |.+.+.++...|+...+.+.+.++.+...+.+
T Consensus 81 ~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~q---LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~ 157 (1113)
T PRK11281 81 ETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQ---LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQ 157 (1113)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3334444444444444444444444443222221 2233333333 55555555555555555565555555555544
Q ss_pred HHHHHHHHHhhHHHHHHH---------------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1387 ISQLEQELANSRLELSEK---------------EKRLSDISQAEAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQ 1451 (2058)
Q Consensus 1387 ~~~l~~~L~~~~~e~~~l---------------e~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~ 1451 (2058)
....+..+++.+..+.+. +.+...++.+.+.++.+.+-++..+...-...+-.+.+...+.++.+
T Consensus 158 PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~ 237 (1113)
T PRK11281 158 PERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQ 237 (1113)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 444444444433333332 24455567788888888888888888777777777788888888888
Q ss_pred HHHHHHHHHhc
Q 045447 1452 SLARQLDDLKQ 1462 (2058)
Q Consensus 1452 ~l~~q~~~~k~ 1462 (2058)
.++.++..+..
T Consensus 238 ~~~~~~~~lq~ 248 (1113)
T PRK11281 238 RLEHQLQLLQE 248 (1113)
T ss_pred HHHHHHHHHHH
Confidence 88888888874
No 97
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.15 E-value=18 Score=48.40 Aligned_cols=223 Identities=16% Similarity=0.214 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHH--
Q 045447 724 AREKLDSVMREAEHQKVEVNGV------LARNVEFSQLVVDYQRKLRETSESLNAAQELSRKLAMEVSVL-KHEKEML-- 794 (2058)
Q Consensus 724 a~ER~e~Lq~n~e~~r~E~~sL------~~rn~eLs~~~~k~e~~l~~~~e~L~aaeel~~~L~~E~~nL-KaEK~Ll-- 794 (2058)
..+.....+.+......-+..+ .++...++....++-..+-.....+....+.++.+....+++ ..+.++.
T Consensus 334 ~~~~~~~e~s~~~~l~~~~~t~~s~~~~~~r~~q~lke~~k~~~~ite~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~ 413 (716)
T KOG4593|consen 334 LMEKLVNEQSRNANLKNKNSTVTSPARGLERARQLLKEELKQVAGITEEETKLKELHETLARRLQKRALLLTQERDLNRA 413 (716)
T ss_pred HHHHHHHHHHHHhhhccccccccCcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433332 344455555555555555555555666666555444444333 3344444
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 795 ----SNAEQRAYDEVRSLSQRVYRLQASLDTIQNAE---E------VREEARAAERRKQEEYIKQVEREWAEAKKELQEE 861 (2058)
Q Consensus 795 ----k~~E~RL~~EnesL~~e~~rLqs~L~tiQs~~---e------~REeses~~Rrrle~~Ie~LE~Els~lKkrL~eE 861 (2058)
++.++|+..+...++.++.+|..++..+..-. + -++.+... ...++++.++..+...|...
T Consensus 414 ~~~~~~~~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k------~~~e~le~~~kdL~s~L~~~ 487 (716)
T KOG4593|consen 414 ILGSKDDEKRLAEELPQVTKEREQLKGLVQKVDKHSLEMEASMEELYREITGQK------KRLEKLEHELKDLQSQLSSR 487 (716)
T ss_pred HhhccchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 45577888888788888777777776655421 1 12222222 22334445555555555543
Q ss_pred HHhHHHHHhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCccccCCCCCCc-
Q 045447 862 RDNVRLLTSDREQ-----TLKNAVKQVEEMGKELATALRAVASAETRAAVAETKLSDMEKRIRPLDAKGDEVDDGSRPS- 935 (2058)
Q Consensus 862 ~e~~r~L~~~re~-----~~~e~qkrid~l~~El~~~~eal~~aetr~~vle~rv~~Le~kL~~~~~k~~s~~~~~~~s- 935 (2058)
...... .+.+. -+.++.++++.|..+-...+ +..-...|.........++..+..++++-
T Consensus 488 ~q~l~~--qr~e~~~~~e~i~~~~ke~~~Le~En~rLr------------~~~e~~~l~gd~~~~~~rVl~~~~npt~~~ 553 (716)
T KOG4593|consen 488 EQSLLF--QREESELLREKIEQYLKELELLEEENDRLR------------AQLERRLLQGDYEENITRVLHMSTNPTSKA 553 (716)
T ss_pred HHHHHH--HHHHhhhhhhHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHhhhhhhhccceeeecCCchHHH
Confidence 322221 11112 25566677766644322222 11111233433334444444333323321
Q ss_pred ---hhHhHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 936 ---DEVQLQVGKEELEKLKEEAQANREHMLQYKS 966 (2058)
Q Consensus 936 ---~E~eL~~lk~ELe~lkeeL~~Ak~qveQYK~ 966 (2058)
....+..|+.+++.++..|..-+..-.+|.+
T Consensus 554 ~~~~k~~~e~LqaE~~~lk~~l~~le~~~~~~~d 587 (716)
T KOG4593|consen 554 RQIKKNRLEELQAELERLKERLTALEGDKMQFRD 587 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccc
Confidence 2266777888888888877665544444433
No 98
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.00 E-value=11 Score=48.27 Aligned_cols=15 Identities=33% Similarity=0.457 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHh
Q 045447 1447 IKENQSLARQLDDLK 1461 (2058)
Q Consensus 1447 ~~e~~~l~~q~~~~k 1461 (2058)
..+...|.+++..+.
T Consensus 111 r~qr~~La~~L~A~~ 125 (420)
T COG4942 111 REQRRRLAEQLAALQ 125 (420)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555666666666
No 99
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.99 E-value=0.96 Score=56.11 Aligned_cols=86 Identities=24% Similarity=0.354 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHH
Q 045447 1316 IEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELA 1395 (2058)
Q Consensus 1316 lE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~ 1395 (2058)
+..+......|..+..+.+++... .+..||+++..++.++..+..++..+.++++.++..+......|..+..+..
T Consensus 179 ~~~l~~~~~~L~~e~~~Lk~~~~e----~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~ 254 (325)
T PF08317_consen 179 LPKLRERKAELEEELENLKQLVEE----IESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQ 254 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh----hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555566666443 6789999999999999999888777777776555555555555555555444
Q ss_pred hhHHHHHHHH
Q 045447 1396 NSRLELSEKE 1405 (2058)
Q Consensus 1396 ~~~~e~~~le 1405 (2058)
.+..++.+++
T Consensus 255 ~l~~eI~e~~ 264 (325)
T PF08317_consen 255 ELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 100
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.90 E-value=19 Score=49.35 Aligned_cols=16 Identities=31% Similarity=0.370 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 045447 334 LEKEAMDLKEKLEKCE 349 (2058)
Q Consensus 334 lEke~~eLkekl~~lE 349 (2058)
-++||.+|+.+|.++-
T Consensus 641 ~d~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 641 KDKEIEELKAKIAQLL 656 (697)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3567889999998763
No 101
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.89 E-value=25 Score=48.70 Aligned_cols=127 Identities=20% Similarity=0.218 Sum_probs=73.3
Q ss_pred hhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHHHHH-HHHHHhhHHHHHH
Q 045447 1202 RNRKSIAETEVALLTTEKLRLQKQLESALKAAENAQASLTTERANSRAMLLTEEEIKSLKLQVREL-NLLRESNVQLREE 1280 (2058)
Q Consensus 1202 RREKEIae~qlel~~qE~~RLqqQle~~qkqLdEar~~L~~Ere~s~t~~~s~e~hkeLmeKleqL-NlLRESN~tLReE 1280 (2058)
++|.+-+...++.+..|..-+++++....++++.....+.....+.. . ....|++++..|+.. +-+++-|.-++.=
T Consensus 814 ~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~-~--~~~~~~~~~~el~~~k~k~~~~dt~i~~~ 890 (1174)
T KOG0933|consen 814 ENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVD-K--VEKDVKKAQAELKDQKAKQRDIDTEISGL 890 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h--HHhHHHHHHHHHHHHHHHHHhhhHHHhhh
Confidence 34556666777777778888888877766666654444433322221 0 122355554444322 1223322222211
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCH
Q 045447 1281 NKYNFEECQKLREVAQKTKSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDV 1349 (2058)
Q Consensus 1281 ~~~~~~k~qkL~e~lqk~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDP 1349 (2058)
.. ..+.....+.....++..+..|+..++.+....++++..++.||..|+.
T Consensus 891 ----~~--------------~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ 941 (1174)
T KOG0933|consen 891 ----LT--------------SQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGD 941 (1174)
T ss_pred ----hh--------------HHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhH
Confidence 11 1222333344444455666788899999999999999999999999983
No 102
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.86 E-value=1.6 Score=51.83 Aligned_cols=101 Identities=19% Similarity=0.303 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 045447 1349 VEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQKRI 1428 (2058)
Q Consensus 1349 PeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~~~ 1428 (2058)
|.+|++++.+++.+...+.++..+++.+++...-.+..++.+++++.....-++. + .-..++..+...
T Consensus 30 ~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~-------v-----~~~~e~~aL~~E 97 (239)
T COG1579 30 RKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSA-------V-----KDERELRALNIE 97 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------c-----ccHHHHHHHHHH
Confidence 6789999999999988888888888777766666666666655555554444431 1 112344445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045447 1429 SAQLRRKCEMLSKEKEESIKENQSLARQLDDLK 1461 (2058)
Q Consensus 1429 ~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k 1461 (2058)
...||.+..++..++..+..+...+++++..++
T Consensus 98 ~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~ 130 (239)
T COG1579 98 IQIAKERINSLEDELAELMEEIEKLEKEIEDLK 130 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555544
No 103
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=94.84 E-value=0.2 Score=49.11 Aligned_cols=64 Identities=22% Similarity=0.237 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 045447 1284 NFEECQKLREVAQKTKSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNI 1347 (2058)
Q Consensus 1284 ~~~k~qkL~e~lqk~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~ri 1347 (2058)
+..+++.+-+.+.-++.+++.|+..-..+..+...+..++..|+.+...|+.|...||.|.+.|
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~v 72 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLEEV 72 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 3344444444444445555555555556666778889999999999999999999999987643
No 104
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=94.65 E-value=34 Score=49.18 Aligned_cols=73 Identities=8% Similarity=0.065 Sum_probs=43.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCH----------HHHHHHHHHHHHHHHHHhh
Q 045447 1299 KSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDV----------EDYDRLKVEVRQMEEKLSG 1368 (2058)
Q Consensus 1299 ~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDP----------eE~e~Lk~Eie~Le~~L~~ 1368 (2058)
+.........+..+...+......+..++.+...++......|..++-.|. .+++.|...|..+...+..
T Consensus 716 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~f~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~ 795 (1047)
T PRK10246 716 LDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTALQASVFDDQQAFLAALLDEETLTQLEQLKQNLENQRQQ 795 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 334444555556666666666666777777777777777777777764444 4455555555555544433
Q ss_pred hhH
Q 045447 1369 KNA 1371 (2058)
Q Consensus 1369 ~~a 1371 (2058)
...
T Consensus 796 ~~~ 798 (1047)
T PRK10246 796 AQT 798 (1047)
T ss_pred HHH
Confidence 333
No 105
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.24 E-value=4.4 Score=44.69 Aligned_cols=98 Identities=21% Similarity=0.235 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 045447 66 EFSKVESQNAQLQKSLDDRVNELAEVQSQKHQLHLQLIGKDGEIERLTMEVAELHKSRRQLMELVEQKDLQHSEKGATIK 145 (2058)
Q Consensus 66 e~~~le~e~~eL~~~l~~~~~Ela~~q~~~~~L~~~~~~~dseverLr~ei~eLe~ekr~ll~llErk~~e~eel~e~l~ 145 (2058)
++...+.+.+-|...+...-++|..++.....+-...-.+-.++++|+.+|+.+-.+.++|-.=+..-..+.+.+...++
T Consensus 11 kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq 90 (140)
T PF10473_consen 11 KLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQ 90 (140)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333444444444444444444455667777777777766666665544444455555555555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045447 146 AYLDKIINLTDNAAQREA 163 (2058)
Q Consensus 146 ~l~eKi~eL~~~~~~~e~ 163 (2058)
....+|.+|....+...-
T Consensus 91 ~~q~kv~eLE~~~~~~~~ 108 (140)
T PF10473_consen 91 KKQEKVSELESLNSSLEN 108 (140)
T ss_pred HHHHHHHHHHHHhHHHHH
Confidence 555555555444444333
No 106
>PRK09039 hypothetical protein; Validated
Probab=94.24 E-value=1.2 Score=55.63 Aligned_cols=21 Identities=14% Similarity=0.343 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 045447 1319 CKKEMEKQRMEKENLEKRVSE 1339 (2058)
Q Consensus 1319 ~~~Ei~~LqeE~~RWkqR~q~ 1339 (2058)
+.+++.-+..+.+++..++..
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~ 64 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAE 64 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 455555555555555555544
No 107
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.20 E-value=25 Score=45.72 Aligned_cols=357 Identities=21% Similarity=0.280 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccccCCccccCCCCCCchhHhHHHhHHHHHHHH
Q 045447 873 EQTLKNAVKQVEEMGKELATALRA-VASAETRAAVAETKLSDMEKRIRPLDAKGDEVDDGSRPSDEVQLQVGKEELEKLK 951 (2058)
Q Consensus 873 e~~~~e~qkrid~l~~El~~~~ea-l~~aetr~~vle~rv~~Le~kL~~~~~k~~s~~~~~~~s~E~eL~~lk~ELe~lk 951 (2058)
+.++.|++.-|+-|+.++..+.+. ..+|+-=+.+++.+ .+|+.++... |.++..++.+|+.++
T Consensus 7 eq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK-~~Lkqq~eEl---------------eaeyd~~R~Eldqtk 70 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEK-EDLKQQLEEL---------------EAEYDLARTELDQTK 70 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---------------HHHHHHHHHHHHHHH
Confidence 345667777888888888777644 34555545555554 2344444332 133444566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHhhhH
Q 045447 952 EEAQANREHMLQYKSIAQVNEAALKEMETVHENFRTRVEGVKKSLEDELHSLRKRVSELERENILKSE---EIASAAGVR 1028 (2058)
Q Consensus 952 eeL~~Ak~qveQYK~IAqsaEeaL~~l~~~~e~yK~e~E~~l~e~e~ei~~L~~ri~eLe~El~~~~e---E~~~~~~~~ 1028 (2058)
+-|....++-..--.--...|++|=.-..+-+.|- -..+-++++++++++.-+....+|+..... ++.......
T Consensus 71 eal~q~~s~hkk~~~~g~e~EesLLqESaakE~~y---l~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~ 147 (772)
T KOG0999|consen 71 EALGQYRSQHKKVARDGEEREESLLQESAAKEEYY---LQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAV 147 (772)
T ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Confidence 65554444332222233456777777666665553 223445555555555555554444432221 222222334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 045447 1029 EDALASAREEITSLKEERSIKISQIVNLEVQVSALKEDLEKEHERRQAAQANYERQVILQSETIQELTKTSQALASLQEQ 1108 (2058)
Q Consensus 1029 e~ql~~l~~El~~Lk~E~~~~~~~~~~~E~q~~~l~~DL~~Q~~~a~eAQ~nYErElvLHAe~IqeL~k~~e~~~~lq~e 1108 (2058)
+.+.-.+..||...|--..+.++.+..++.+.-+|+ .|....+--|.-||- ..| +|. .+-+...-+..+
T Consensus 148 E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQ----KqVs~LR~sQVEyEg--lkh--eik---RleEe~elln~q 216 (772)
T KOG0999|consen 148 EDQRRRLRDELKEYKFREARLLSEYSELEEENISLQ----KQVSNLRQSQVEYEG--LKH--EIK---RLEEETELLNSQ 216 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH----HHHHHHhhhhhhhhH--HHH--HHH---HHHHHHHHHHHH
Confidence 445555667777766666677777777766655444 455566677888874 232 122 222222233333
Q ss_pred HH---HHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCC-
Q 045447 1109 AS---ELRKLADA-LKAENSELKSKWELEKSVLEKLKNEAEEKYDEVNEQNKILHSRLEALHIQLTEKDGSSVRISSQS- 1183 (2058)
Q Consensus 1109 ~~---elr~~aes-ak~~L~e~e~SWeeqk~~Le~Ei~el~~R~eDL~~QN~LLH~QLE~lt~Qia~~~~~~a~~ss~s- 1183 (2058)
+. .|+..|+- ...+|...+. --++|-.|.+|++.... ++|.-.=|.|+.. |+ . ..+..++
T Consensus 217 ~ee~~~Lk~IAekQlEEALeTlq~-EReqk~alkkEL~q~~n-~e~~~~~n~l~~s-ld----------g--k~~eDga~ 281 (772)
T KOG0999|consen 217 LEEAIRLKEIAEKQLEEALETLQQ-EREQKNALKKELSQYRN-AEDISSLNHLLFS-LD----------G--KFGEDGAE 281 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHhcc-hhhhhhhhhhhee-cc----------c--ccccccCC
Confidence 32 23333331 1112222211 11455666776665433 2334343443321 11 0 0000111
Q ss_pred CCCCCCC-chhHHHHHHHHhhhhh--HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHH
Q 045447 1184 TDSNPIG-DASLQSVISFLRNRKS--IAETEVALLTTEKLRLQKQLESALKAAENAQASLTTERANSRAMLLTEEEIKSL 1260 (2058)
Q Consensus 1184 ~~~~s~~-~e~L~eVI~yLRREKE--Iae~qlel~~qE~~RLqqQle~~qkqLdEar~~L~~Ere~s~t~~~s~e~hkeL 1260 (2058)
.+++..- .-+|-.+-.-|+-|-- ..+...++...|...|++||....+.--..-..|.. +.+.+-++ .-.|
T Consensus 282 pn~d~e~eh~~l~kl~~Dl~tel~~p~sDl~sel~iseiqkLkqqL~smErek~~l~anL~d----tqt~le~T--~~~l 355 (772)
T KOG0999|consen 282 PNNDPEEEHGALKKLASDLFTELQGPVSDLFSELNISEIQKLKQQLMSMEREKAELLANLQD----TQTQLEHT--EGDL 355 (772)
T ss_pred CCCChhhhcchhhhccchhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH----HHHhhccc--hhHH
Confidence 1111110 0113333332332110 456777788889999999998877766555555532 22222222 3356
Q ss_pred HHHHHHHHHHHHhhHHHHHH
Q 045447 1261 KLQVRELNLLRESNVQLREE 1280 (2058)
Q Consensus 1261 meKleqLNlLRESN~tLReE 1280 (2058)
|.+.+.+.+|.|-=-.||--
T Consensus 356 ~~~~er~~~l~e~v~al~rl 375 (772)
T KOG0999|consen 356 MEQRERVDRLTEHVQALRRL 375 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 77777777777766666554
No 108
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.95 E-value=38 Score=46.92 Aligned_cols=288 Identities=20% Similarity=0.306 Sum_probs=129.1
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 045447 1266 ELNLLRESNVQLREENKYNFEECQKLREVAQKTKSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCR 1345 (2058)
Q Consensus 1266 qLNlLRESN~tLReE~~~~~~k~qkL~e~lqk~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~ 1345 (2058)
+.|.+-=.-..|+.|......+...+++.+..-...++.+...+..+....+..+.|+++ .| +.
T Consensus 714 ~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~s-------------el---~s 777 (1200)
T KOG0964|consen 714 DRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESELGS-------------EL---FS 777 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhH-------------HH---Hh
Confidence 445555555555555554443333444333333333333334444444444333333331 22 23
Q ss_pred CCCHHHHHHHH---HHHHHHHHHHhhhhHHHHH---HHhhhhh------------hhhHHH-----HHHHHHHhhHHHHH
Q 045447 1346 NIDVEDYDRLK---VEVRQMEEKLSGKNAEIEE---TRNLLST------------KLDTIS-----QLEQELANSRLELS 1402 (2058)
Q Consensus 1346 riDPeE~e~Lk---~Eie~Le~~L~~~~ae~e~---~~~~l~~------------~~~~~~-----~l~~~L~~~~~e~~ 1402 (2058)
..+|++.++|+ .+|.+|..++.....+-.. .++.++. ....|. .++..|.....++.
T Consensus 778 qLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~~kL~~r~~~l~~ei~~~~d~~~~~el~~~~~el~ 857 (1200)
T KOG0964|consen 778 QLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANLNTKLYKRVNELEQEIGDLNDSSRRSELELEKSELE 857 (1200)
T ss_pred hcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccccchhhhhHHHHHHH
Confidence 56676655544 4677777766654433322 2221111 111111 13445555555666
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHhcccccCCC
Q 045447 1403 EKEKRLSDISQAEAARKLEMEKQKRISAQLRRKCEML-------------SKEKEESIKENQSLARQLDDLKQGKKSTGD 1469 (2058)
Q Consensus 1403 ~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~-------------~~e~~e~~~e~~~l~~q~~~~k~~~~~~~~ 1469 (2058)
..+.+++++..+...|+..+++.+......++.++++ -++.+.+......|-+.-+.+-.-.+..|.
T Consensus 858 ~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~lek~~~~~~~~dKe~Ek~~~rk~~Ll~KreE~~ekIr~lG~ 937 (1200)
T KOG0964|consen 858 SEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKNLEKEKKDNINFDKELEKLVRRKHMLLKKREECCEKIRELGV 937 (1200)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6677777777777766666664444444444322222 133444444444444444433333333332
Q ss_pred cchhHHHHhhhhhhhHHHHHHHHHHHHHHHHH-----------------HhhhhhHHHHHHhhhhhhHHHHHHHHHHHHH
Q 045447 1470 VTGEQVMKEKEEKDTRIQILERTVERQREELK-----------------KEKDDNQKEKEKRLKGEKVMLDSAKLADQWK 1532 (2058)
Q Consensus 1470 ~~~~q~~ke~~~~~~~~~~~~~~~e~~~~~~~-----------------~e~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 1532 (2058)
-+-+--.+ . .+..+..|.+.|+++-.+|+ +.++.|..-...-.....-|.+.|.-++|.|
T Consensus 938 Lp~daf~k--y-~~~~~~el~kkL~~~neelk~ys~VNKkAldQf~nfseQre~L~~R~eELd~s~~sI~eLi~vLdqrK 1014 (1200)
T KOG0964|consen 938 LPEDAFEK--Y-QDKKSKELMKKLHRCNEELKGYSNVNKKALDQFVNFSEQRESLKKRQEELDRSKDSILELITVLDQRK 1014 (1200)
T ss_pred CchHHHHH--h-ccCCHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhh
Confidence 21111111 1 22233334444444333332 2233333332223334456777777777766
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhhhhhcCCCCCcceeeccCccchhhh
Q 045447 1533 TRISSELE-QHKQAVKRLSDELEKLKHTEAGLPEGTSVVQLLSGTNLDDH 1581 (2058)
Q Consensus 1533 ~~~~~~~e-~~~~~~~~l~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1581 (2058)
-+- ++ -.++.-++.++=..+| .|+|+-..+.--+++.+|+
T Consensus 1015 ~ea---i~~TFkqV~knFsevF~~L------Vp~G~a~iim~k~d~~~d~ 1055 (1200)
T KOG0964|consen 1015 YEA---IDLTFKQVKKNFSEVFSRL------VPGGTALIIMRKRDNANDH 1055 (1200)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHh------CCCCceeehhhcccccccc
Confidence 543 33 2223222333333332 6888866666666766665
No 109
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=93.94 E-value=2.9 Score=46.25 Aligned_cols=60 Identities=20% Similarity=0.232 Sum_probs=29.8
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1383 KLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQKRISAQLRRKCEMLSKE 1442 (2058)
Q Consensus 1383 ~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e 1442 (2058)
..-.|+.|++.|....+.+.....++.++......+.-.+..+......|-.+++.+...
T Consensus 78 l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k 137 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEK 137 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 334455555555555555555555555554444444444444444444555444444433
No 110
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.94 E-value=15 Score=49.25 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhh
Q 045447 1484 TRIQILERTVERQREELKKEKDD 1506 (2058)
Q Consensus 1484 ~~~~~~~~~~e~~~~~~~~e~~~ 1506 (2058)
.||-...+-+.||+++..|=+.|
T Consensus 491 ~RIlEIv~NI~KQk~eI~KIl~D 513 (594)
T PF05667_consen 491 RRILEIVKNIRKQKEEIEKILSD 513 (594)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Confidence 56666666666666666655555
No 111
>PRK09039 hypothetical protein; Validated
Probab=93.87 E-value=2 Score=53.80 Aligned_cols=15 Identities=20% Similarity=0.209 Sum_probs=6.4
Q ss_pred hHHHHHHHHHHHHHH
Q 045447 1484 TRIQILERTVERQRE 1498 (2058)
Q Consensus 1484 ~~~~~~~~~~e~~~~ 1498 (2058)
.+|..|...|+...+
T Consensus 172 ~~i~~L~~~L~~a~~ 186 (343)
T PRK09039 172 AKIADLGRRLNVALA 186 (343)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 112
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.87 E-value=18 Score=44.67 Aligned_cols=45 Identities=16% Similarity=0.198 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhHHHHHhhhHHHHHHHHHhhhhhHHHHHhhHHHHHHH
Q 045447 183 TQGKELIERHNAWLNEELTSKVNSLVELRRTHADLEADMSAKLSDVERQ 231 (2058)
Q Consensus 183 eQE~eLLqknneWLe~ELk~KteEll~~Rre~~~~e~~l~aki~eLqre 231 (2058)
-.++.-+..++.-|++||..|++++.....+.+. +.++|.+||..
T Consensus 205 v~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~----LlsqivdlQ~r 249 (306)
T PF04849_consen 205 VKQLSEANQQIASLSEELARKTEENRRQQEEITS----LLSQIVDLQQR 249 (306)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 4566778889999999999999999999999654 55566666554
No 113
>PRK11281 hypothetical protein; Provisional
Probab=93.81 E-value=49 Score=47.71 Aligned_cols=143 Identities=17% Similarity=0.228 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch-hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 045447 62 SLQEEFSKVESQNAQLQKSLDDRVNELAEVQSQKHQLHLQLIGKD-GEIERLTMEVAELHKSRRQLMELVEQKDLQHSEK 140 (2058)
Q Consensus 62 sl~~e~~~le~e~~eL~~~l~~~~~Ela~~q~~~~~L~~~~~~~d-severLr~ei~eLe~ekr~ll~llErk~~e~eel 140 (2058)
+.-.+..+.++.++.|+..+.+.-+++.+++.++..++....... .....+ +.++|-..+.+....+...
T Consensus 70 ~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~---------Sl~qLEq~L~q~~~~Lq~~ 140 (1113)
T PRK11281 70 ALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTL---------SLRQLESRLAQTLDQLQNA 140 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcccccccccccccc---------CHHHHHHHHHHHHHHHHHH
Confidence 333444555666666777766666666666666665553211100 000111 1112222333333444445
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH--------HHHHHHhHHHHHHHHHHHHhHHHHHhhhH-
Q 045447 141 GATIKAYLDKIINLT-------DNAAQREARLAETEAELARA--------QATCTRLTQGKELIERHNAWLNEELTSKV- 204 (2058)
Q Consensus 141 ~e~l~~l~eKi~eL~-------~~~~~~e~rl~e~es~~~s~--------k~~e~RLeQE~eLLqknneWLe~ELk~Kt- 204 (2058)
+.++..++..++.++ ....+...|++++...+.+. ..+-..|+-|..++.-+|..+..+|...+
T Consensus 141 Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~ 220 (1113)
T PRK11281 141 QNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQ 220 (1113)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 555555555555444 45566667777777665431 23445678888888888888888887443
Q ss_pred -HHHHHHHHh
Q 045447 205 -NSLVELRRT 213 (2058)
Q Consensus 205 -eEll~~Rre 213 (2058)
.++...|++
T Consensus 221 l~~l~~~q~d 230 (1113)
T PRK11281 221 LQDLLQKQRD 230 (1113)
T ss_pred HHHHHHHHHH
Confidence 344455554
No 114
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=93.78 E-value=23 Score=44.37 Aligned_cols=74 Identities=18% Similarity=0.163 Sum_probs=34.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045447 1388 SQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLK 1461 (2058)
Q Consensus 1388 ~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k 1461 (2058)
+..+++..-++.++..+.+-...++++.+-+.+++..++..++++-.+..++..++..+..+-.+|+--++++|
T Consensus 112 ~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk 185 (499)
T COG4372 112 QKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLK 185 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444333444444555555555555555555555555555555554444444443333444
No 115
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.58 E-value=37 Score=45.61 Aligned_cols=199 Identities=18% Similarity=0.191 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 836 ERRKQEEYIKQVEREWAEAK-KELQEERDNVRLLTSD--REQTLKNAVKQVEEMGKELATALRAVASAETRAAVAETKLS 912 (2058)
Q Consensus 836 ~Rrrle~~Ie~LE~Els~lK-krL~eE~e~~r~L~~~--re~~~~e~qkrid~l~~El~~~~eal~~aetr~~vle~rv~ 912 (2058)
-|++...+|+.|+.....+. .-+.++...++.|.+. -...+..+.+.-+++... .....+..+.
T Consensus 23 ~rr~~~~~i~~Le~~k~~l~~~pv~~el~kvk~l~l~Ges~~~f~~w~~~~~~i~~~-------------~~~~ie~~l~ 89 (569)
T PRK04778 23 LRKRNYKRIDELEERKQELENLPVNDELEKVKKLNLTGQSEEKFEEWRQKWDEIVTN-------------SLPDIEEQLF 89 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHh-------------hhhhHHHHHH
Confidence 35777888999987766664 4466666677665432 233444444444443110 0111222222
Q ss_pred HHHhhcccccCCccccCCCCCCchhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 045447 913 DMEKRIRPLDAKGDEVDDGSRPSDEVQLQVGKEELEKLKEEAQANREHMLQYKSIAQVNEAALKEMETVHENFRTRVEGV 992 (2058)
Q Consensus 913 ~Le~kL~~~~~k~~s~~~~~~~s~E~eL~~lk~ELe~lkeeL~~Ak~qveQYK~IAqsaEeaL~~l~~~~e~yK~e~E~~ 992 (2058)
+.+.-+.. -.+..++..+. .+.+.+..+..-....-..|..|...+++-+
T Consensus 90 ~ae~~~~~-----------------~~f~~a~~~~~-------~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr------ 139 (569)
T PRK04778 90 EAEELNDK-----------------FRFRKAKHEIN-------EIESLLDLIEEDIEQILEELQELLESEEKNR------ 139 (569)
T ss_pred HHHHHHhc-----------------ccHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 22221111 11222333333 3333333333333334555555555554444
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 045447 993 KKSLEDELHSLRKRVSELERENILKSEEIASAAGVREDALASAREEITSLKE-----ERSIKISQIVNLEVQVSALKEDL 1067 (2058)
Q Consensus 993 l~e~e~ei~~L~~ri~eLe~El~~~~eE~~~~~~~~e~ql~~l~~El~~Lk~-----E~~~~~~~~~~~E~q~~~l~~DL 1067 (2058)
..+..|+.+..++.+.+...+-.++.+....+++|..+...++.... +...+...+..++..+..+...+
T Consensus 140 -----~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~ 214 (569)
T PRK04778 140 -----EEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIM 214 (569)
T ss_pred -----HHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555565555554444332 22233333344444455555554
Q ss_pred HHHHHHHHHHHHhHH
Q 045447 1068 EKEHERRQAAQANYE 1082 (2058)
Q Consensus 1068 ~~Q~~~a~eAQ~nYE 1082 (2058)
..-=.+...++.-|=
T Consensus 215 ~~iP~l~~~~~~~~P 229 (569)
T PRK04778 215 EEIPELLKELQTELP 229 (569)
T ss_pred HHHHHHHHHHHHHhh
Confidence 443345555555553
No 116
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=93.52 E-value=6.5 Score=51.41 Aligned_cols=58 Identities=17% Similarity=0.229 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 045447 1320 KKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETR 1377 (2058)
Q Consensus 1320 ~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~ 1377 (2058)
+.++..++.+.+.-.......-.+++-++|+....+-..+..+...+.....++...+
T Consensus 167 ~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~ 224 (498)
T TIGR03007 167 DEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAI 224 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444566667777666666666666665555554444333
No 117
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.47 E-value=4 Score=45.00 Aligned_cols=109 Identities=23% Similarity=0.140 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 045447 1385 DTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLKQGK 1464 (2058)
Q Consensus 1385 ~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k~~~ 1464 (2058)
+.|-+|+.+|..+..++..+.........+...|+.+++.+...+..+.-.+.++..++..+.++.+.++.+|+.|...+
T Consensus 24 ~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~ 103 (140)
T PF10473_consen 24 DHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLN 103 (140)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555555555555666777777777888888888888888899999999999999999998766
Q ss_pred ccCCCcchhHHHHhhhhhhhHHHHHHHHHHHHH
Q 045447 1465 KSTGDVTGEQVMKEKEEKDTRIQILERTVERQR 1497 (2058)
Q Consensus 1465 ~~~~~~~~~q~~ke~~~~~~~~~~~~~~~e~~~ 1497 (2058)
.+... .=-.+|++ |....+.+.-.++.+.
T Consensus 104 ~~~~~---~l~~~E~e-k~q~~e~~~~~ve~L~ 132 (140)
T PF10473_consen 104 SSLEN---LLQEKEQE-KVQLKEESKSAVEMLQ 132 (140)
T ss_pred HHHHH---HHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 33221 11122222 4455555555555543
No 118
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.47 E-value=2.2 Score=46.35 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=30.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 045447 1301 DCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCR 1345 (2058)
Q Consensus 1301 elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~ 1345 (2058)
++..|+..+..+...+..+...+..++.|...-..++...=.+|.
T Consensus 4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE 48 (132)
T PF07926_consen 4 ELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYE 48 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666677777777777777777777777773
No 119
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.45 E-value=4 Score=50.52 Aligned_cols=84 Identities=19% Similarity=0.266 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHH
Q 045447 1320 KKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRL 1399 (2058)
Q Consensus 1320 ~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~ 1399 (2058)
......|+.+....++.. .--+..||++..+++.+|..+..++..+...++.++..+......|.....+..++..
T Consensus 178 ~~~~~~L~~e~~~L~~~~----~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~ 253 (312)
T smart00787 178 RDRKDALEEELRQLKQLE----DELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNT 253 (312)
T ss_pred HHHHHHHHHHHHHHHHhH----HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555543 3334679999999999998888777777666665555555555555555555555554
Q ss_pred HHHHHHHH
Q 045447 1400 ELSEKEKR 1407 (2058)
Q Consensus 1400 e~~~le~k 1407 (2058)
++.+++..
T Consensus 254 ~I~~ae~~ 261 (312)
T smart00787 254 EIAEAEKK 261 (312)
T ss_pred HHHHHHHH
Confidence 44444443
No 120
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.34 E-value=19 Score=49.81 Aligned_cols=108 Identities=16% Similarity=0.172 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 045447 1351 DYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQKRISA 1430 (2058)
Q Consensus 1351 E~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~ 1430 (2058)
+|..++.....+++.++.+..++.-+.....+..+.+.+++.+......++.+.-.++..+...+....+++...+..+.
T Consensus 249 ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le 328 (1072)
T KOG0979|consen 249 EYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLE 328 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666666655555666667778888888888888887777777776666666677777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1431 QLRRKCEMLSKEKEESIKENQSLARQLD 1458 (2058)
Q Consensus 1431 ~~k~~~e~~~~e~~e~~~e~~~l~~q~~ 1458 (2058)
.+|+..+...+...-..+.+..++..+.
T Consensus 329 ~lk~~~~~rq~~i~~~~k~i~~~q~el~ 356 (1072)
T KOG0979|consen 329 SLKKAAEKRQKRIEKAKKMILDAQAELQ 356 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 7776666666655555555555554443
No 121
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=93.33 E-value=15 Score=41.75 Aligned_cols=133 Identities=24% Similarity=0.342 Sum_probs=80.1
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 045447 1344 CRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEME 1423 (2058)
Q Consensus 1344 y~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e 1423 (2058)
-+..-.-||+.|+-+...|.+++.++..++-.++......-..+..++.+|.....+...+...+.+. ...+.
T Consensus 36 ge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~-------~~~~~ 108 (177)
T PF13870_consen 36 GEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDR-------EEELA 108 (177)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 34566789999999999999999999999987777666666666666666666665555555555444 22222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccccCCCc--chhHHHHhhhhhhhHHHHHHHHHHHHH
Q 045447 1424 KQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLKQ--GKKSTGDV--TGEQVMKEKEEKDTRIQILERTVERQR 1497 (2058)
Q Consensus 1424 ~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k~--~~~~~~~~--~~~q~~ke~~~~~~~~~~~~~~~e~~~ 1497 (2058)
+++..+.. +..+...+.++...++. |.-..|+. +-.....+-.++...|..+...++.+.
T Consensus 109 ~~r~~l~~--------------~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~ 172 (177)
T PF13870_consen 109 KLREELYR--------------VKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEILE 172 (177)
T ss_pred HHHHHHHH--------------HHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222 22333334444444442 33333333 122333333457788888888877654
No 122
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=93.22 E-value=45 Score=45.52 Aligned_cols=53 Identities=19% Similarity=0.193 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1099 SQALASLQEQASELRKLADALKAENSELKSKWELEKSVLEKLKNEAEEKYDEV 1151 (2058)
Q Consensus 1099 ~e~~~~lq~e~~elr~~aesak~~L~e~e~SWeeqk~~Le~Ei~el~~R~eDL 1151 (2058)
.+.+..++.++..+....+.+...+...-..|..++..|+.++..++..+.+.
T Consensus 229 ~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~ 281 (650)
T TIGR03185 229 AQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKAN 281 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555566666778888888888888777766643
No 123
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=93.16 E-value=21 Score=42.00 Aligned_cols=107 Identities=12% Similarity=0.163 Sum_probs=51.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 045447 1301 DCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLL 1380 (2058)
Q Consensus 1301 elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l 1380 (2058)
++...+..+.++....+.+...+..+..=.+.|.+.+++++.-+.+- ......+|..+..+.....+.+..+.+..
T Consensus 17 e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~----~~~~~~~i~~~~~erdq~~~dL~s~E~sf 92 (207)
T PF05010_consen 17 EVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQ----KELSEAEIQKLLKERDQAYADLNSLEKSF 92 (207)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh----HHhHHHHHHHHHhhHHHHHHHHHHHHhhH
Confidence 33333344555555555555555555555567777777777654332 23333334444333333333443344444
Q ss_pred hhhhhHHHHHHHHHHhhHHHHHHHHHHhhhH
Q 045447 1381 STKLDTISQLEQELANSRLELSEKEKRLSDI 1411 (2058)
Q Consensus 1381 ~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~ 1411 (2058)
+.....+.+++.-+.+.++.-..|.+-+.+.
T Consensus 93 sdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey 123 (207)
T PF05010_consen 93 SDLHKRYEKQKEVIEGYKKNEETLKKCIEEY 123 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4444444445555555544444444444444
No 124
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=93.07 E-value=32 Score=43.42 Aligned_cols=132 Identities=22% Similarity=0.208 Sum_probs=69.2
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC------CCcchhHHHHh
Q 045447 1405 EKRLSDISQAEAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLKQGKKST------GDVTGEQVMKE 1478 (2058)
Q Consensus 1405 e~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k~~~~~~------~~~~~~q~~ke 1478 (2058)
+.=.-+..+.++.|.+|-|.+-.. =|| ...-|.+++..|++.+++=.+...+- +++-+..+..+
T Consensus 182 eQLRre~V~lentlEQEqEalvN~--LwK--------rmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~ 251 (552)
T KOG2129|consen 182 EQLRREAVQLENTLEQEQEALVNS--LWK--------RMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAE 251 (552)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH--HHH--------HHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHH
Confidence 333344556677777776655433 244 33345557777777775444322211 23345555554
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045447 1479 KEEKDTRIQILERTVERQREELKKEKDDNQKEKEKRLKGEKVMLDSAKLADQWKTRISSELEQHKQAVKRLSDELEKLKH 1558 (2058)
Q Consensus 1479 ~~~~~~~~~~~~~~~e~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~el~~~~~ 1558 (2058)
--.|+.|.-.|||+|-.|.. +.|+-. | .+...-+|+.-+++.+++++.-| ..+|++..-
T Consensus 252 ----~~hi~~l~~EveRlrt~l~~------Aqk~~~---e-----k~~qy~~Ee~~~reen~rlQrkL---~~e~erRea 310 (552)
T KOG2129|consen 252 ----KLHIDKLQAEVERLRTYLSR------AQKSYQ---E-----KLMQYRAEEVDHREENERLQRKL---INELERREA 310 (552)
T ss_pred ----HHHHHHHHHHHHHHHHHHHH------HHHHHH---H-----HHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHH
Confidence 24789999999997744432 112211 1 13344455666666776665533 344555443
Q ss_pred hhcCCCCCc
Q 045447 1559 TEAGLPEGT 1567 (2058)
Q Consensus 1559 ~~~~~~~~~ 1567 (2058)
.-.++.|.-
T Consensus 311 lcr~lsEse 319 (552)
T KOG2129|consen 311 LCRMLSESE 319 (552)
T ss_pred HHHHhhhhh
Confidence 333555544
No 125
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.79 E-value=27 Score=45.55 Aligned_cols=124 Identities=22% Similarity=0.273 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcchhHHHHhhhhhhhHHHHHHHHHHHHHH
Q 045447 1419 KLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLKQGKKSTGDVTGEQVMKEKEEKDTRIQILERTVERQRE 1498 (2058)
Q Consensus 1419 ~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k~~~~~~~~~~~~q~~ke~~~~~~~~~~~~~~~e~~~~ 1498 (2058)
..+++.-++..+.+|.+...+..++.+.....--|+..+..|++.. .| +++++.+|+=.||...+
T Consensus 330 ~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~g-----------lk----~ds~Lk~leIalEqkkE 394 (654)
T KOG4809|consen 330 LEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAG-----------LK----RDSKLKSLEIALEQKKE 394 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hh----hhhhhhHHHHHHHHHHH
Confidence 4667777788888888888888877777777777888888888644 44 78999999999999887
Q ss_pred HHHHhhhhhHHHHH--HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhh
Q 045447 1499 ELKKEKDDNQKEKE--KRLKGEKVMLDSAKLADQWKTRISSELEQHKQAVKRL---SDELEKLK 1557 (2058)
Q Consensus 1499 ~~~~e~~~~~~~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l---~~el~~~~ 1557 (2058)
+.-+=-.+|++.+. -.......+.+-|+.|+.+.+..++.+-+...-|++| -+|++.+|
T Consensus 395 ec~kme~qLkkAh~~~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneK 458 (654)
T KOG4809|consen 395 ECSKMEAQLKKAHNIEDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEK 458 (654)
T ss_pred HHHHHHHHHHHHHHhhHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 77666667776633 3334467799999999999999998877655556664 34455444
No 126
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=92.77 E-value=0.6 Score=62.62 Aligned_cols=151 Identities=19% Similarity=0.246 Sum_probs=31.7
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHH--HHHHH
Q 045447 1341 LQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQ--AEAAR 1418 (2058)
Q Consensus 1341 LeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~--~~~~l 1418 (2058)
|..+..+...-++.++.|+..|+.--.. .++..+...+..|..|-+.+--...++..+.--..|.-. -++.+
T Consensus 255 ~~~~~~ls~~~i~~l~~El~RL~~lK~~------~lk~~I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~~~E~lL~~h 328 (619)
T PF03999_consen 255 LEENSGLSLDTIEALEEELERLEELKKQ------NLKEFIEKKRQEIEELWDKCHYSEEERQAFTPFYIDSYTEELLELH 328 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhccCcchHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccchHHHHHHH
Confidence 6677777888888888888877641111 123333444444444444443333444332212222111 14556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcchhHHHHhhhhhhhHHHHHHHHHHHHHH
Q 045447 1419 KLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLKQGKKSTGDVTGEQVMKEKEEKDTRIQILERTVERQRE 1498 (2058)
Q Consensus 1419 ~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k~~~~~~~~~~~~q~~ke~~~~~~~~~~~~~~~e~~~~ 1498 (2058)
..|+.+++.+....|.=++.+ .+..++-++...|..-. ++..+=++ .|-+-.+|. ..+.+| -+.+=++-+
T Consensus 329 E~Ei~~Lk~~~~~~k~Il~~v-~k~~~l~~~~~~Le~~~---~D~~Rl~~--RGg~LLkEE-k~rk~i---~k~lPkle~ 398 (619)
T PF03999_consen 329 EEEIERLKEEYESRKPILELV-EKWESLWEEMEELEESS---KDPSRLNN--RGGHLLKEE-KERKRI---QKKLPKLEE 398 (619)
T ss_dssp ------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH---H-CCGG--------HHHHH-HHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh---cChhhhcc--cccHHHHHH-HHHHHH---HHHhhHHHH
Confidence 677777777776666444422 23333334444443322 23333332 233345542 134444 455666666
Q ss_pred HHHHhhhhh
Q 045447 1499 ELKKEKDDN 1507 (2058)
Q Consensus 1499 ~~~~e~~~~ 1507 (2058)
+|++....-
T Consensus 399 ~L~~~l~~w 407 (619)
T PF03999_consen 399 ELKKKLEEW 407 (619)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665553
No 127
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=92.77 E-value=33 Score=42.74 Aligned_cols=97 Identities=25% Similarity=0.330 Sum_probs=63.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 252 KLSSLQEEFCSSKDAAAANEERF---STELSTVNKLVELYKESSEEWSRKAGELEGVIKALETQLAQVQNDCKEKLEKEV 328 (2058)
Q Consensus 252 Kl~~lqe~L~~~ke~~a~~ee~f---r~EL~aq~RLaeLyke~aee~~~k~~ELe~~ikeLe~~L~q~e~~~~e~LEkE~ 328 (2058)
++..+.+.-..++.+.+.+.+.| ..=|.-.+.++.-|+.--+.+.+++..|+.-...+....+......- .-.
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~----~m~ 278 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALI----EMA 278 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHH
Confidence 55555554455666777777544 44567778888888888888888888887666666666654333222 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 329 SAREQLEKEAMDLKEKLEKCEAEI 352 (2058)
Q Consensus 329 ~~~~~lEke~~eLkekl~~lE~El 352 (2058)
..+....+++..++.+++.|+.-|
T Consensus 279 eer~~~~~~~~~~~~k~~kLe~Lc 302 (309)
T PF09728_consen 279 EERQKLEKELEKLKKKIEKLEKLC 302 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777888888877644
No 128
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=92.75 E-value=18 Score=43.80 Aligned_cols=73 Identities=15% Similarity=0.220 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 045447 972 EAALKEMETVHENFRTRVEGVKKSLEDELHSLRKRVSELERENILKSEEIASAAGVREDALASAREEITSLKE 1044 (2058)
Q Consensus 972 EeaL~~l~~~~e~yK~e~E~~l~e~e~ei~~L~~ri~eLe~El~~~~eE~~~~~~~~e~ql~~l~~El~~Lk~ 1044 (2058)
...|..+......|+..++..+..++.++..|..+|.....++..+.+-.....-.+.=++..+...|..|+.
T Consensus 62 ~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~ 134 (258)
T PF15397_consen 62 HKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKD 134 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666666666666666666666666666655543322222222244444444544444
No 129
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=92.70 E-value=34 Score=43.96 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 045447 1225 QLESALKAAENAQASL 1240 (2058)
Q Consensus 1225 Qle~~qkqLdEar~~L 1240 (2058)
++...++.+.....++
T Consensus 39 ~l~q~q~ei~~~~~~i 54 (420)
T COG4942 39 QLKQIQKEIAALEKKI 54 (420)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 130
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.68 E-value=49 Score=44.51 Aligned_cols=140 Identities=15% Similarity=0.192 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHH
Q 045447 1311 ERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCR--NIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTIS 1388 (2058)
Q Consensus 1311 el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~--riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~ 1388 (2058)
.+...+......+..|..+.++.+++ |. .-+.+.+..+..++..+...+......+.......+..+..+.
T Consensus 314 ~l~~~l~~~~e~~~~l~~Ei~~l~~s-------Y~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~le 386 (569)
T PRK04778 314 TLPDFLEHAKEQNKELKEEIDRVKQS-------YTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELE 386 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-------cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 33334444455555555555555544 64 4556678888888888888777766666655556666777777
Q ss_pred HHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
Q 045447 1389 QLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQKRISAQLRRKCEML---------SKEKEESIKENQSLARQL 1457 (2058)
Q Consensus 1389 ~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~---------~~e~~e~~~e~~~l~~q~ 1457 (2058)
.+...+..+..+..++...++.+...+...+..++.++..+..+++.++.. ..-+..+..+...|..++
T Consensus 387 el~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L 464 (569)
T PRK04778 387 EILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEEL 464 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777777777777777777777777777777777777777655543 233444444444444444
No 131
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=92.68 E-value=24 Score=40.89 Aligned_cols=78 Identities=19% Similarity=0.268 Sum_probs=44.9
Q ss_pred HHhHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 045447 180 TRLTQGKELIERHNAWLNEELTSKVNSLVELRRTHADLEADMSAKLSDVERQFSECSSSLNWNKERVRELEIKLSSLQEE 259 (2058)
Q Consensus 180 ~RLeQE~eLLqknneWLe~ELk~KteEll~~Rre~~~~e~~l~aki~eLqre~~E~~ssL~~sk~rv~eLe~Kl~~lqe~ 259 (2058)
+.+.-|++-|+...--|+++=..-.++.-.+-+++. .+.++|..|+-++..+.....-.+++..+|..+-..|+..
T Consensus 63 K~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q----~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Q 138 (193)
T PF14662_consen 63 KALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQ----SLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQ 138 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHH
Confidence 445666666666555555544433333333333332 3677777888777766665556666777776666666654
Q ss_pred Hh
Q 045447 260 FC 261 (2058)
Q Consensus 260 L~ 261 (2058)
++
T Consensus 139 l~ 140 (193)
T PF14662_consen 139 LC 140 (193)
T ss_pred HH
Confidence 43
No 132
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=92.39 E-value=74 Score=45.89 Aligned_cols=153 Identities=19% Similarity=0.138 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 045447 65 EEFSKVESQNAQLQKSLDDRVNELAEVQSQKHQLHLQLIG--KDGEIERLTMEVAELHKSRRQLMELVEQKDLQHSEKGA 142 (2058)
Q Consensus 65 ~e~~~le~e~~eL~~~l~~~~~Ela~~q~~~~~L~~~~~~--~dseverLr~ei~eLe~ekr~ll~llErk~~e~eel~e 142 (2058)
.+.+..++..+.++..++.--+++..++.++..++..... ..-....|.. -+......+.+++.
T Consensus 58 ~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq--------------~l~~~~~~L~~~q~ 123 (1109)
T PRK10929 58 EERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQ--------------EILQVSSQLLEKSR 123 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHH--------------HHHHHHHHHHHHHH
Confidence 4444555566666666665555555555555544322110 0001122222 22233344666777
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH--------HHHHHHHhHHHHHHHHHHHHhHHHHHhh--hHH
Q 045447 143 TIKAYLDKIINLTDNA-------AQREARLAETEAELAR--------AQATCTRLTQGKELIERHNAWLNEELTS--KVN 205 (2058)
Q Consensus 143 ~l~~l~eKi~eL~~~~-------~~~e~rl~e~es~~~s--------~k~~e~RLeQE~eLLqknneWLe~ELk~--Kte 205 (2058)
++..++.++.++.... ++...+++++...+.+ ..++...|+-|..++..++.-++.||.. +-.
T Consensus 124 ~l~~~~~~~~~~~~~l~~~pq~~~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~ 203 (1109)
T PRK10929 124 QAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELELAQLSANNRQ 203 (1109)
T ss_pred HHHHHhhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 7777777775555444 6667777777765432 2445567888888999999999988874 334
Q ss_pred HHHHHHHhhhhhHHHHHhhHHHHHHHHHHhhh
Q 045447 206 SLVELRRTHADLEADMSAKLSDVERQFSECSS 237 (2058)
Q Consensus 206 Ell~~Rre~~~~e~~l~aki~eLqre~~E~~s 237 (2058)
++...|++- +..++..++.++..+..
T Consensus 204 ~L~~~q~dl------~~~~~~~l~~~~~~Lq~ 229 (1109)
T PRK10929 204 ELARLRSEL------AKKRSQQLDAYLQALRN 229 (1109)
T ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 555666652 34444444444443333
No 133
>PLN03188 kinesin-12 family protein; Provisional
Probab=92.34 E-value=74 Score=45.76 Aligned_cols=114 Identities=20% Similarity=0.166 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045447 1103 ASLQEQASELRKLADALKAENSELKSKWELEKSVLEKLK----------NEAEEKYDEVNEQNKILHSRLEALHIQLTEK 1172 (2058)
Q Consensus 1103 ~~lq~e~~elr~~aesak~~L~e~e~SWeeqk~~Le~Ei----------~el~~R~eDL~~QN~LLH~QLE~lt~Qia~~ 1172 (2058)
..|+.++..+|+.++..+.+|...+.+-++-+..|..-+ .+++.++-+|-+=-+-..+=|+.+..-.+.
T Consensus 1068 eelr~eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaak- 1146 (1320)
T PLN03188 1068 EELRTELDASRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAAR- 1146 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 366778888999999999999999999888877666444 344444444444333333444444422111
Q ss_pred ccccccccCCCCCCCCCCchhHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHH
Q 045447 1173 DGSSVRISSQSTDSNPIGDASLQSVISFLRNRKSIAETEVALLTTEKLRLQKQLES 1228 (2058)
Q Consensus 1173 ~~~~a~~ss~s~~~~s~~~e~L~eVI~yLRREKEIae~qlel~~qE~~RLqqQle~ 1228 (2058)
|| --+..+.=..-|-.=|.-||-|||- .-..++-||++||.||-.
T Consensus 1147 ----ag----~kg~~~~f~~alaae~s~l~~erek---er~~~~~enk~l~~qlrd 1191 (1320)
T PLN03188 1147 ----AG----VRGAESKFINALAAEISALKVEREK---ERRYLRDENKSLQAQLRD 1191 (1320)
T ss_pred ----hc----cccchHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHhh
Confidence 11 0000111112355566777744443 235678899999999843
No 134
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.33 E-value=58 Score=44.50 Aligned_cols=27 Identities=41% Similarity=0.455 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHhhh
Q 045447 1384 LDTISQLEQELANSRLELSEKEKRLSD 1410 (2058)
Q Consensus 1384 ~~~~~~l~~~L~~~~~e~~~le~k~~d 1410 (2058)
+..+..+..++.....+++.+..++..
T Consensus 390 ~~~~~~~~~~~~~~e~el~~l~~~l~~ 416 (650)
T TIGR03185 390 QDAKSQLLKELRELEEELAEVDKKIST 416 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555555555555555555555543
No 135
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=92.28 E-value=3.3 Score=48.02 Aligned_cols=141 Identities=22% Similarity=0.336 Sum_probs=81.0
Q ss_pred HHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1359 VRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQKRISAQLRRKCEM 1438 (2058)
Q Consensus 1359 ie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~ 1438 (2058)
|.=|+..|.+.-+++ +.+-..|-.|+..|...+..+...+..+.++.....+-..+++.....+...+.+++.
T Consensus 12 IsLLKqQLke~q~E~-------~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~l 84 (202)
T PF06818_consen 12 ISLLKQQLKESQAEV-------NQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAEL 84 (202)
T ss_pred HHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHH
Confidence 444554444443333 4444555666666666666666666666666544444455666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCC--CcchhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 045447 1439 LSKEKEESIKENQSLARQLDDLKQGKKSTG--DVTGEQVMKEKEEKDTRIQILERTVERQREELKKEKDDN 1507 (2058)
Q Consensus 1439 ~~~e~~e~~~e~~~l~~q~~~~k~~~~~~~--~~~~~q~~ke~~~~~~~~~~~~~~~e~~~~~~~~e~~~~ 1507 (2058)
+.....-+..++..|...+..+-.++..+. ....+ +.-..-.-...+..|...+++++++|..|+..+
T Consensus 85 Lrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~de-ak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~ 154 (202)
T PF06818_consen 85 LREKLGQLEAELAELREELACAGRLKRQCQLLSESDE-AKAQRQAGEDELGSLRREVERLRAELQRERQRR 154 (202)
T ss_pred hhhhhhhhHHHHHHHHHHHHhhccchhhhccccccch-hHHhhccccccchhHHHHHHHHHHHHHHHHHhH
Confidence 666666666677777777777621111111 00111 111000012468999999999999999988864
No 136
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=92.22 E-value=37 Score=42.04 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 045447 1439 LSKEKEESIKENQSLARQLDDLKQ 1462 (2058)
Q Consensus 1439 ~~~e~~e~~~e~~~l~~q~~~~k~ 1462 (2058)
+.|+...+..++..|+.+++...+
T Consensus 183 L~Kqm~~l~~eKr~Lq~~l~~~~s 206 (310)
T PF09755_consen 183 LWKQMDKLEAEKRRLQEKLEQPVS 206 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHccccC
Confidence 347778888899999999887654
No 137
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=92.11 E-value=23 Score=44.85 Aligned_cols=61 Identities=21% Similarity=0.347 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1102 LASLQEQASELRKLADALKAENSELKSKWELEKSVLEKLKNEAEEKYDEVNEQNKILHSRLEAL 1165 (2058)
Q Consensus 1102 ~~~lq~e~~elr~~aesak~~L~e~e~SWeeqk~~Le~Ei~el~~R~eDL~~QN~LLH~QLE~l 1165 (2058)
+..++.++..++...+.++..+......|. ..+..++..++..+.++..+-..+..+|+..
T Consensus 212 l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~---~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~ 272 (423)
T TIGR01843 212 LGRLEAELEVLKRQIDELQLERQQIEQTFR---EEVLEELTEAQARLAELRERLNKARDRLQRL 272 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444444444444444444444333333 3444566667777777777766666666654
No 138
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=91.98 E-value=55 Score=43.50 Aligned_cols=118 Identities=22% Similarity=0.291 Sum_probs=76.4
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Q 045447 1276 QLREENKYNFEECQKLREVAQKTKSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRL 1355 (2058)
Q Consensus 1276 tLReE~~~~~~k~qkL~e~lqk~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~L 1355 (2058)
-||.|+....+.++.|+ ..+..|...++.....+ ..+...++.....|.......+.+ -+|+..+
T Consensus 278 ~l~~E~~~~~ee~~~l~-------~Qi~~l~~e~~d~e~~~---~~~~~~~~~~~~~~~~~~~~~~~~-----e~e~~l~ 342 (511)
T PF09787_consen 278 ELKQERDHLQEEIQLLE-------RQIEQLRAELQDLEAQL---EGEQESFREQPQELSQQLEPELTT-----EAELRLY 342 (511)
T ss_pred hhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHhch-----HHHHHHH
Confidence 36667665544444443 34555555666665555 556777778888888888888877 7889999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHH--HHHHHHhhhH
Q 045447 1356 KVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLEL--SEKEKRLSDI 1411 (2058)
Q Consensus 1356 k~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~--~~le~k~~d~ 1411 (2058)
..++.-+..++......+ ...+..+...++.|+..|+...+.. .+++.++..+
T Consensus 343 ~~el~~~~ee~~~~~s~~---~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~l 397 (511)
T PF09787_consen 343 YQELYHYREELSRQKSPL---QLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQL 397 (511)
T ss_pred HHHHHHHHHHHHHhcChH---HHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhc
Confidence 999988887666655544 4455666677777777777644111 2555555444
No 139
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.96 E-value=7.4 Score=47.02 Aligned_cols=87 Identities=25% Similarity=0.433 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHH
Q 045447 1316 IEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELA 1395 (2058)
Q Consensus 1316 lE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~ 1395 (2058)
+-.+..++..++.+++.|+.|++.+|+--...+...+..++.++..++..+......++..+..+...+..+..++..+.
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~ 101 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLE 101 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556778888999999999999999943333667788888888888888888877777777777777777776666666
Q ss_pred hhHHHHH
Q 045447 1396 NSRLELS 1402 (2058)
Q Consensus 1396 ~~~~e~~ 1402 (2058)
..+..+.
T Consensus 102 ~~~~~l~ 108 (302)
T PF10186_consen 102 QRRSRLS 108 (302)
T ss_pred HHHHHHH
Confidence 6665555
No 140
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=91.96 E-value=56 Score=43.58 Aligned_cols=74 Identities=23% Similarity=0.306 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------HHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 045447 945 EELEKLKEEAQANREHMLQYKSIAQVNEAALKEMETVHENFRTRV--------EGVKKSLEDELHSLRKRVSELERENIL 1016 (2058)
Q Consensus 945 ~ELe~lkeeL~~Ak~qveQYK~IAqsaEeaL~~l~~~~e~yK~e~--------E~~l~e~e~ei~~L~~ri~eLe~El~~ 1016 (2058)
.+++.|+.+|...-.-+.+-..-++-+-..|...+. .||... -..++....+|.-|.+|-...++.+..
T Consensus 15 ~dle~LQreLd~~~~~l~~~Q~~S~~srk~L~e~tr---efkk~~pe~k~k~~~~llK~yQ~EiD~LtkRsk~aE~afl~ 91 (629)
T KOG0963|consen 15 FDLERLQRELDAEATEIAQRQDESEISRKRLAEETR---EFKKNTPEDKLKMVNPLLKSYQSEIDNLTKRSKFAEAAFLD 91 (629)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHH---HHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 344455555555444555545555545555555444 444433 335788888888888888888888877
Q ss_pred hHHHH
Q 045447 1017 KSEEI 1021 (2058)
Q Consensus 1017 ~~eE~ 1021 (2058)
.++.+
T Consensus 92 vye~L 96 (629)
T KOG0963|consen 92 VYEKL 96 (629)
T ss_pred HHHHH
Confidence 77655
No 141
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=91.90 E-value=83 Score=45.43 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=12.3
Q ss_pred ccccCCCCCCCCCcccc
Q 045447 1675 RPRLKRPEESQGDMETS 1691 (2058)
Q Consensus 1675 ~~~~~~~~~~~~~~~~~ 1691 (2058)
+|.+.=-+||-|..|..
T Consensus 975 ~~~~l~lDEp~~~lD~~ 991 (1047)
T PRK10246 975 RIDSLFLDEGFGTLDSE 991 (1047)
T ss_pred CCCEEEEeCCCCcCCHH
Confidence 67777788887766654
No 142
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=91.79 E-value=20 Score=41.81 Aligned_cols=65 Identities=14% Similarity=0.324 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1098 TSQALASLQEQASELRKLADALKAENSELKSKWELEKSVLEKLKNEAEEKYDEVNEQNKILHSRL 1162 (2058)
Q Consensus 1098 ~~e~~~~lq~e~~elr~~aesak~~L~e~e~SWeeqk~~Le~Ei~el~~R~eDL~~QN~LLH~QL 1162 (2058)
+...+..|+.++...|...+.....+..-+..|.++|...-.=-..++.-|-.+=.-|.-|-..|
T Consensus 136 l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~l 200 (202)
T PF06818_consen 136 LRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALEREL 200 (202)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456677778888888888888999999999999998665555566777777777777665544
No 143
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=91.22 E-value=34 Score=44.86 Aligned_cols=30 Identities=7% Similarity=0.098 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 045447 894 LRAVASAETRAAVAETKLSDMEKRIRPLDA 923 (2058)
Q Consensus 894 ~eal~~aetr~~vle~rv~~Le~kL~~~~~ 923 (2058)
...+..++.+...++.++..|..++....+
T Consensus 210 ~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~ 239 (498)
T TIGR03007 210 QEELEAARLELNEAIAQRDALKRQLGGEEP 239 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 334444455555567777778877775543
No 144
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=91.13 E-value=10 Score=46.99 Aligned_cols=145 Identities=24% Similarity=0.321 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC------------HH-HHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 045447 1315 EIEACKKEMEKQRMEKENLEKRVSELLQRCRNID------------VE-DYDRLKVEVRQMEEKLSGKNAEIEETRNLLS 1381 (2058)
Q Consensus 1315 elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riD------------Pe-E~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~ 1381 (2058)
+++.|..|....+.-+.-.+.|.+.|=.+|...+ |. +-..|-.-+.+.++....+..++..++..+.
T Consensus 17 eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~ 96 (319)
T PF09789_consen 17 ELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLN 96 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555544444444445555555544454333 32 3355555566666677777777777778888
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045447 1382 TKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLK 1461 (2058)
Q Consensus 1382 ~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k 1461 (2058)
+.+.-+.-||..++..+........+. ...+...+-.++|+++....+|...+..+.-|+.++..|...++-.+.-|-
T Consensus 97 E~qGD~KlLR~~la~~r~~~~~~~~~~--~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN 174 (319)
T PF09789_consen 97 EAQGDIKLLREKLARQRVGDEGIGARH--FPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLN 174 (319)
T ss_pred HHhchHHHHHHHHHhhhhhhccccccc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888988888777665443332 116677888999999999999999999999999999999998888777775
No 145
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=91.05 E-value=1.6 Score=43.32 Aligned_cols=37 Identities=19% Similarity=0.332 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 045447 1311 ERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNI 1347 (2058)
Q Consensus 1311 el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~ri 1347 (2058)
.+...-+.+..++..|+.|...|+.|...||-|.+.|
T Consensus 43 ~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~~v 79 (79)
T PRK15422 43 NAQHQREELERENNHLKEQQNGWQERLQALLGRMEEV 79 (79)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3334455578899999999999999999999987654
No 146
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=90.69 E-value=81 Score=43.07 Aligned_cols=179 Identities=20% Similarity=0.170 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1355 LKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQKRISAQLRR 1434 (2058)
Q Consensus 1355 Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~ 1434 (2058)
++.+|..+.+.......+++.+.......+.++++|=..+.+.-..-..+-...--+.+....|..++..+...+.+++.
T Consensus 438 ~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~ 517 (698)
T KOG0978|consen 438 LSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKA 517 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445556666666677777777777766666644333344333333445566677777777777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcchhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh
Q 045447 1435 KCEMLSKEKEESIKENQSLARQLDDLKQGKKSTGDVTGEQVMKEKEEKDTRIQILERTVERQREELKKEKDDNQKEKEKR 1514 (2058)
Q Consensus 1435 ~~e~~~~e~~e~~~e~~~l~~q~~~~k~~~~~~~~~~~~q~~ke~~~~~~~~~~~~~~~e~~~~~~~~e~~~~~~~~~~~ 1514 (2058)
..+.+......+..+...++..+..+... ....+......-+-..++.+..++|+....+.
T Consensus 518 ~~~~~~~~i~~leeq~~~lt~~~~~l~~e-------------------l~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~ 578 (698)
T KOG0978|consen 518 SVDKLELKIGKLEEQERGLTSNESKLIKE-------------------LTTLTQSLEMLKKKAQEAKQSLEDLQIELEKS 578 (698)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhhHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655554444433333333332222111 11112222222333345556666666443332
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 045447 1515 LKGEKVMLDSAKLADQWKTRISSELEQHKQAVKRLSDELEKLKHT 1559 (2058)
Q Consensus 1515 ~~~e~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~el~~~~~~ 1559 (2058)
-+. +..++.........++....-.++|.+|+++|+.-
T Consensus 579 ~~~-------le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~k 616 (698)
T KOG0978|consen 579 EAK-------LEQIQEQYAELELELEIEKFKRKRLEEELERLKRK 616 (698)
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 33444555556677787777788899999888874
No 147
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=90.47 E-value=81 Score=42.71 Aligned_cols=225 Identities=17% Similarity=0.194 Sum_probs=125.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hccccccccCCCCCCCCCCchhHHHHHHHHh-
Q 045447 1128 SKWELEKSVLEKLKNEAEEKYDEVNEQNKILHSRLEALHIQLTE----KDGSSVRISSQSTDSNPIGDASLQSVISFLR- 1202 (2058)
Q Consensus 1128 ~SWeeqk~~Le~Ei~el~~R~eDL~~QN~LLH~QLE~lt~Qia~----~~~~~a~~ss~s~~~~s~~~e~L~eVI~yLR- 1202 (2058)
..|+.++..|..-+.-++.-.+.|...+-||+-.+.+++.=++- +.+.. + +.++...++-+..-..|+
T Consensus 238 ~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kv---q----p~d~Le~e~~~K~q~LL~~ 310 (739)
T PF07111_consen 238 QAWEPEREELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKV---Q----PSDPLEPEFSRKCQQLLSR 310 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---C----CCCCCCchhHHHHHHHHHH
Confidence 36999999999999999999999999999999999998864432 21211 1 112333344444445555
Q ss_pred -hhhhHHH-HHHhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHhhHH
Q 045447 1203 -NRKSIAE-TEVALLT----TEKLRLQKQLESALKAAENAQASLTTERANSRAMLLTEEEIKSLKLQVRELNLLRESNVQ 1276 (2058)
Q Consensus 1203 -REKEIae-~qlel~~----qE~~RLqqQle~~qkqLdEar~~L~~Ere~s~t~~~s~e~hkeLmeKleqLNlLRESN~t 1276 (2058)
|||=|+- +|+.... .....|+.++..++..+ .++ .....+. |..|.+|.-++.+=|-...|
T Consensus 311 WREKVFaLmVQLkaQeleh~~~~~qL~~qVAsLQeev-------~sq--~qEqaiL----q~SLqDK~AElevERv~skt 377 (739)
T PF07111_consen 311 WREKVFALMVQLKAQELEHRDSVKQLRGQVASLQEEV-------ASQ--QQEQAIL----QHSLQDKAAELEVERVGSKT 377 (739)
T ss_pred HHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHH-------HHH--HHHHHHH----HHHHhHHHHHHHHHHHhhHH
Confidence 6776643 3332221 12233444433222222 111 1122233 77788999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHH
Q 045447 1277 LREENKYNFEECQKLREVAQKTKSDCDNLENLLRERQIEI---------------------EACKKEMEKQRMEKENLEK 1335 (2058)
Q Consensus 1277 LReE~~~~~~k~qkL~e~lqk~~~elepLe~~i~el~~el---------------------E~~~~Ei~~LqeE~~RWkq 1335 (2058)
|-.|..+.+....+++.....+...+--+..-+...+.-+ .+.-..+.+++.=..| +
T Consensus 378 LQ~ELsrAqea~~~lqqq~~~aee~Lk~v~eav~S~q~~L~s~ma~ve~a~aRL~sL~~RlSyAvrrv~tiqGL~Ar--k 455 (739)
T PF07111_consen 378 LQAELSRAQEARRRLQQQTASAEEQLKLVSEAVSSSQQWLESQMAKVEQALARLPSLSNRLSYAVRRVHTIQGLMAR--K 455 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccchhHHHHHH--H
Confidence 9999887665555544444333333333333333333333 2222222222222111 1
Q ss_pred HH-HHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 045447 1336 RV-SELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIE 1374 (2058)
Q Consensus 1336 R~-q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e 1374 (2058)
.+ ..|=......-|-.|..|..|+..|.++=..+.+++.
T Consensus 456 ~Alaqlrqe~~~~~pp~~~dL~~ELqqLReERdRl~aeLq 495 (739)
T PF07111_consen 456 LALAQLRQEQCPPSPPSVTDLSLELQQLREERDRLDAELQ 495 (739)
T ss_pred HHHHHHHhccCCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 22 1222223333466778888888888877767766664
No 148
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=90.42 E-value=75 Score=42.24 Aligned_cols=94 Identities=18% Similarity=0.171 Sum_probs=48.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HhHHHHHhhhHHHHHHHHHh
Q 045447 137 HSEKGATIKAYLDKIINLTDNAAQREARLAETEAELARAQATCTRLTQGKELIERHN---AWLNEELTSKVNSLVELRRT 213 (2058)
Q Consensus 137 ~eel~e~l~~l~eKi~eL~~~~~~~e~rl~e~es~~~s~k~~e~RLeQE~eLLqknn---eWLe~ELk~KteEll~~Rre 213 (2058)
++.+..+...+++.+..|...+..+...+++++....... ..+.+...-+...+ -|-+.|+.-...++..|+.+
T Consensus 276 l~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~---~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee 352 (511)
T PF09787_consen 276 LEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQ---ESFREQPQELSQQLEPELTTEAELRLYYQELYHYREE 352 (511)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666555555555555554433211 22222222222222 22278888888888888776
Q ss_pred hh----hhHHHHHhhHHHHHHHHH
Q 045447 214 HA----DLEADMSAKLSDVERQFS 233 (2058)
Q Consensus 214 ~~----~~e~~l~aki~eLqre~~ 233 (2058)
.. .+...+..|..++++-..
T Consensus 353 ~~~~~s~~~~k~~~ke~E~q~lr~ 376 (511)
T PF09787_consen 353 LSRQKSPLQLKLKEKESEIQKLRN 376 (511)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH
Confidence 43 233344445555555433
No 149
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=90.28 E-value=38 Score=38.60 Aligned_cols=156 Identities=23% Similarity=0.289 Sum_probs=80.7
Q ss_pred HHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045447 1264 VRELNLLRESNVQLREENKYNFEECQKLREVAQKTK-SDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQ 1342 (2058)
Q Consensus 1264 leqLNlLRESN~tLReE~~~~~~k~qkL~e~lqk~~-~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLe 1342 (2058)
-+++.-+|=-|.+|+.........+...++.-.-+. ...+-|+.....+...++....|+.-|+ ..+..-|+
T Consensus 5 ~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk-------~~~~~~v~ 77 (177)
T PF13870_consen 5 RNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLK-------KKIGKTVQ 77 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 355666777788888887766555554444332222 1233444455555566655555555333 22221111
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHH---------
Q 045447 1343 RCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQ--------- 1413 (2058)
Q Consensus 1343 Ky~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~--------- 1413 (2058)
-+..++++|.....+...++..+......+..+++.+..+..+++.+...+..+..
T Consensus 78 ---------------~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ 142 (177)
T PF13870_consen 78 ---------------ILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPA 142 (177)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH
Confidence 11222222223333333334444455555566666666666666666555554322
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1414 ---AEAARKLEMEKQKRISAQLRRKCEMLSK 1441 (2058)
Q Consensus 1414 ---~~~~l~~e~e~~~~~~~~~k~~~e~~~~ 1441 (2058)
.-...+..++.+++.++.|+++++.+..
T Consensus 143 ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~ 173 (177)
T PF13870_consen 143 LLRDYDKTKEEVEELRKEIKELERKVEILEM 173 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334455666777777777777766543
No 150
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=89.93 E-value=26 Score=41.07 Aligned_cols=127 Identities=20% Similarity=0.290 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHh-----------hHH
Q 045447 1331 ENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELAN-----------SRL 1399 (2058)
Q Consensus 1331 ~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~-----------~~~ 1399 (2058)
+-|+..++.+|++.. ||+ .-|..-|..++..+......+..+.+........+..++..... ...
T Consensus 8 ~~~~a~~~~~ld~~E--DP~--~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~e 83 (221)
T PF04012_consen 8 TLVKANINELLDKAE--DPE--KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGRE 83 (221)
T ss_pred HHHHHHHHHHHHhhc--CHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 357889999999986 899 77777788888777776666655444333333333322222222 222
Q ss_pred HHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045447 1400 ELS-EKEKRLSDISQAEAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLK 1461 (2058)
Q Consensus 1400 e~~-~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k 1461 (2058)
++. ..-.++.++......++.+++.....+..++..+..+...+.++..+...|.-+....+
T Consensus 84 dLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~ 146 (221)
T PF04012_consen 84 DLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAK 146 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 22334444444455555555555555555555555555555555555555544444433
No 151
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=89.84 E-value=2.3 Score=41.51 Aligned_cols=66 Identities=21% Similarity=0.212 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCCCCCchhHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Q 045447 1151 VNEQNKILHSRLEALHIQLTEKDGSSVRISSQSTDSNPIGDASLQSVISFLRNRKSIAETEVALLTTEKLRLQKQLESAL 1230 (2058)
Q Consensus 1151 L~~QN~LLH~QLE~lt~Qia~~~~~~a~~ss~s~~~~s~~~e~L~eVI~yLRREKEIae~qlel~~qE~~RLqqQle~~q 1230 (2058)
|...|.-|-++|+.++.++.. ....++-||+|+|.+..++..+-.++..|+..++.+.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~----------------------~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~ 60 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSV----------------------HEIENKRLRRERDSAERQLGDAYEENNKLKEENEALR 60 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888877532 1347899999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 045447 1231 KAAENAQA 1238 (2058)
Q Consensus 1231 kqLdEar~ 1238 (2058)
++|++.+.
T Consensus 61 ~el~~~r~ 68 (69)
T PF14197_consen 61 KELEELRA 68 (69)
T ss_pred HHHHHhhc
Confidence 99988764
No 152
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.82 E-value=12 Score=51.45 Aligned_cols=110 Identities=23% Similarity=0.285 Sum_probs=52.4
Q ss_pred HHHHHHHHHhhHHHHHH-hhhh-------HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1264 VRELNLLRESNVQLREE-NKYN-------FEECQKLREVAQKTKSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEK 1335 (2058)
Q Consensus 1264 leqLNlLRESN~tLReE-~~~~-------~~k~qkL~e~lqk~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkq 1335 (2058)
.+-|.+|...=.+||++ ..+. ..++..|....++-..++..+++.+..++...+.+.+.++.+.+--.-..+
T Consensus 535 ~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~ 614 (717)
T PF10168_consen 535 QECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMK 614 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777776 2211 122222222222222233344444444444444444444444333344556
Q ss_pred HHHHHHhhcCCCCH----HHHHHHHHHHHHHHHHHhhhhHHHH
Q 045447 1336 RVSELLQRCRNIDV----EDYDRLKVEVRQMEEKLSGKNAEIE 1374 (2058)
Q Consensus 1336 R~q~LLeKy~riDP----eE~e~Lk~Eie~Le~~L~~~~ae~e 1374 (2058)
|++.+|..-+.-.| +| +.+++|++.+...++...+-++
T Consensus 615 R~~~vl~~l~~~~P~LS~AE-r~~~~EL~~~~~~l~~l~~si~ 656 (717)
T PF10168_consen 615 RVDRVLQLLNSQLPVLSEAE-REFKKELERMKDQLQDLKASIE 656 (717)
T ss_pred HHHHHHHHHhccCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665555444 34 5566666666655544444443
No 153
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=89.64 E-value=60 Score=39.96 Aligned_cols=62 Identities=26% Similarity=0.401 Sum_probs=36.9
Q ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 287 LYKESSEEWSRKAGELEGVIKALETQLAQ----VQNDCKEK---LEKEVSAREQLEKEAMDLKEKLEKCEAE 351 (2058)
Q Consensus 287 Lyke~aee~~~k~~ELe~~ikeLe~~L~q----~e~~~~e~---LEkE~~~~~~lEke~~eLkekl~~lE~E 351 (2058)
|+.+..+++-+|+.--+.+|-.++..+.. +..+++.+ |+ .....|..+...|++.+-++++|
T Consensus 232 LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllE---ErNKeL~ne~n~LkEr~~qyEkE 300 (305)
T PF14915_consen 232 LLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLE---ERNKELINECNHLKERLYQYEKE 300 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHH
Confidence 46666777777777666667666666643 22222221 11 23445666777788888777765
No 154
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=89.37 E-value=68 Score=40.16 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=28.6
Q ss_pred HHhHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHhhh
Q 045447 180 TRLTQGKELIERHNAWLNEELTSKVNSLVELRRTHA 215 (2058)
Q Consensus 180 ~RLeQE~eLLqknneWLe~ELk~KteEll~~Rre~~ 215 (2058)
..|-.+++-++.++.-|.-++.+-.+|...+-.+..
T Consensus 129 e~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD 164 (319)
T PF09789_consen 129 EDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERD 164 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667888999999999999999988887766643
No 155
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=89.13 E-value=44 Score=39.18 Aligned_cols=103 Identities=21% Similarity=0.311 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhh
Q 045447 26 AYIRYLQTDFETVKARADAAAITAEQTCSLLEQKFISLQEEFSKVESQNAQLQKSLDDRVNE---LAEVQSQKHQLHLQL 102 (2058)
Q Consensus 26 ~~i~~l~~el~t~KA~~e~~~i~aEQ~~~~lEqk~~sl~~e~~~le~e~~eL~~~l~~~~~E---la~~q~~~~~L~~~~ 102 (2058)
..|..|..++...|...... +..++++.+.-..|..-+..++.++.+|+..|..-.++ |..+..++..+...+
T Consensus 27 ~lIksLKeei~emkk~e~~~----~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l 102 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERN----EKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKEL 102 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777765444 36667777777888888889999999998877543332 333333444443334
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045447 103 IGKDGEIERLTMEVAELHKSRRQLMELVEQ 132 (2058)
Q Consensus 103 ~~~dseverLr~ei~eLe~ekr~ll~llEr 132 (2058)
..-.-+.+-|..++..++.++++|..-.+.
T Consensus 103 ~~Lk~e~evL~qr~~kle~ErdeL~~kf~~ 132 (201)
T PF13851_consen 103 KDLKWEHEVLEQRFEKLEQERDELYRKFES 132 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445556666666666666666655443
No 156
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=89.00 E-value=35 Score=47.25 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHH
Q 045447 1386 TISQLEQELANSRLELSEKEK 1406 (2058)
Q Consensus 1386 ~~~~l~~~L~~~~~e~~~le~ 1406 (2058)
.++.|+.++.....++..+..
T Consensus 289 ~i~~L~~~l~~l~~~~~~l~~ 309 (754)
T TIGR01005 289 LIQRLRERQAELRATIADLST 309 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554444444433
No 157
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.91 E-value=3.8 Score=39.63 Aligned_cols=43 Identities=23% Similarity=0.370 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 045447 1305 LENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNI 1347 (2058)
Q Consensus 1305 Le~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~ri 1347 (2058)
|....++++-..+++..++..|+.+-..|+.|...||-|.+.|
T Consensus 37 l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkme~V 79 (79)
T COG3074 37 LSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKMEEV 79 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 3344556666778889999999999999999999999987654
No 158
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=88.74 E-value=1e+02 Score=41.54 Aligned_cols=157 Identities=20% Similarity=0.243 Sum_probs=94.7
Q ss_pred hhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1381 STKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDL 1460 (2058)
Q Consensus 1381 ~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~ 1460 (2058)
...+..-..|..+++.-.+..+.++.+|+.+ +.+++.+++. +......+.++++....--..|-.+++.+
T Consensus 611 eeLqqeNk~LKKk~~aE~kq~~~~eikVn~L-------~~E~e~~kk~---~eE~~~~~~keie~K~~~e~~L~~EveK~ 680 (786)
T PF05483_consen 611 EELQQENKALKKKITAESKQSNVYEIKVNKL-------QEELENLKKK---HEEETDKYQKEIESKSISEEELLGEVEKA 680 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhH---HHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3333444444444444444445555555555 3343333332 22333445566666666666677777766
Q ss_pred hcccccCCCcchhHHHHhhhhhhhHH--------HHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhhHHHHHHHHHHHHH
Q 045447 1461 KQGKKSTGDVTGEQVMKEKEEKDTRI--------QILERTVERQREELKKEKDDNQKEKEKRLKGEKVMLDSAKLADQWK 1532 (2058)
Q Consensus 1461 k~~~~~~~~~~~~q~~ke~~~~~~~~--------~~~~~~~e~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 1532 (2058)
|. +...|.|-+.|-|-|- --.+|+-.. -|-...|+|. +=....+.|...++...-++-+.
T Consensus 681 k~--------~a~EAvK~q~EtdlrCQhKIAeMVALMEKHK~q-YDkiVEEkDa---EL~~~k~KE~E~~s~k~sLE~EL 748 (786)
T PF05483_consen 681 KL--------TADEAVKLQEETDLRCQHKIAEMVALMEKHKHQ-YDKIVEEKDA---ELGLYKKKEQEQSSHKASLELEL 748 (786)
T ss_pred HH--------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 3345566554444332 223333222 3344556665 65666677777888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 045447 1533 TRISSELEQHKQAVKRLSDELEKLKHT 1559 (2058)
Q Consensus 1533 ~~~~~~~e~~~~~~~~l~~el~~~~~~ 1559 (2058)
..+.++|-.++..|+-...+-++|+..
T Consensus 749 s~lk~el~slK~QLk~e~~eKE~l~~e 775 (786)
T PF05483_consen 749 SNLKNELSSLKKQLKTERTEKEKLKKE 775 (786)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999998874
No 159
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=88.15 E-value=94 Score=40.27 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 696 LEDDLGKARSEIIALRSERDKLAL 719 (2058)
Q Consensus 696 L~eql~k~r~El~~LrsE~~K~s~ 719 (2058)
-+.+|...|.+...|+.+.-|+.+
T Consensus 402 tqk~LqEsr~eKetLqlelkK~k~ 425 (527)
T PF15066_consen 402 TQKHLQESRNEKETLQLELKKIKA 425 (527)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhh
Confidence 334444555555555555555543
No 160
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=88.09 E-value=86 Score=39.79 Aligned_cols=114 Identities=19% Similarity=0.226 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 045447 1054 VNLEVQVSALKEDLEKEHERRQAAQANYERQVILQS---ETIQELTKTSQALASLQEQASELRKLADALKAENSELKSKW 1130 (2058)
Q Consensus 1054 ~~~E~q~~~l~~DL~~Q~~~a~eAQ~nYErElvLHA---e~IqeL~k~~e~~~~lq~e~~elr~~aesak~~L~e~e~SW 1130 (2058)
..+..++..++..+.........++.+|.+-.-|+. .+-..+......+..++.++..++.....++..+...+..|
T Consensus 154 ~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~ 233 (423)
T TIGR01843 154 KQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQGELGRLEAELEVLKRQIDELQLER 233 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444433344455666665422222 12233444444455555566666666655666666555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045447 1131 ELEKSVLEKLKNEAEEKYDEVNEQNKILHSRLEALHIQLT 1170 (2058)
Q Consensus 1131 eeqk~~Le~Ei~el~~R~eDL~~QN~LLH~QLE~lt~Qia 1170 (2058)
...... ...++..++.++..+=.-+..+++.+..++.
T Consensus 234 ~~~~~~---~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 234 QQIEQT---FREEVLEELTEAQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 543332 2334445556666666666666666555443
No 161
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.95 E-value=83 Score=39.43 Aligned_cols=80 Identities=21% Similarity=0.358 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHhhhhhhhhHH
Q 045447 165 LAETEAELARAQATCTRLTQGKELIERHNAWLNEELTSKVNSLVELRRTHADLEADMSAKLSDVERQFSECSSSLNWNKE 244 (2058)
Q Consensus 165 l~e~es~~~s~k~~e~RLeQE~eLLqknneWLe~ELk~KteEll~~Rre~~~~e~~l~aki~eLqre~~E~~ssL~~sk~ 244 (2058)
|..+..++.........+.+++.-++.+-.|+...+...+++...+ .+.|+++++..+.++. ++..
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l-----------~~eI~e~~~~~~~~r~---~t~~ 276 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQEL-----------LAEIAEAEKIREECRG---WTRS 276 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhcC---CCHH
Confidence 3333444444444444555555555555555555554444433333 3345666666555543 4566
Q ss_pred HHHHHHHHHHHHHH
Q 045447 245 RVRELEIKLSSLQE 258 (2058)
Q Consensus 245 rv~eLe~Kl~~lqe 258 (2058)
.+..|..++..|+.
T Consensus 277 Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 277 EVKRLKAKVDALEK 290 (325)
T ss_pred HHHHHHHHHHHHHH
Confidence 66777766665553
No 162
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.76 E-value=94 Score=39.84 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045447 1132 LEKSVLEKLKNEAEEKYDEVNEQNKILHSRLEALHIQLTE 1171 (2058)
Q Consensus 1132 eqk~~Le~Ei~el~~R~eDL~~QN~LLH~QLE~lt~Qia~ 1171 (2058)
.+...|+.++..++...--|..||-=||-||=++++|.+.
T Consensus 403 aRe~eleqevkrLrq~nr~l~eqneelngtilTls~q~lk 442 (502)
T KOG0982|consen 403 AREIELEQEVKRLRQPNRILSEQNEELNGTILTLSTQFLK 442 (502)
T ss_pred HHHHHHHHHHHHhccccchhhhhhhhhhhhhhhHHHHHHH
Confidence 5667899999999998888999999999999999888753
No 163
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=87.33 E-value=6.3 Score=44.25 Aligned_cols=81 Identities=16% Similarity=0.220 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 045447 1283 YNFEECQKLREVAQKTKSDCDNLENLLRERQIE--IEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVR 1360 (2058)
Q Consensus 1283 ~~~~k~qkL~e~lqk~~~elepLe~~i~el~~e--lE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie 1360 (2058)
.+..++.+|.+.++.++..+.-.++.|++|.+- ++.++.+|..|+.++.....|.-.|=.--.-|-|+|.+.+..+.+
T Consensus 83 ~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~ 162 (201)
T KOG4603|consen 83 VLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQ 162 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 334455566666666666677788888888774 477899999999999999999999999999999999999988876
Q ss_pred HHH
Q 045447 1361 QME 1363 (2058)
Q Consensus 1361 ~Le 1363 (2058)
..=
T Consensus 163 ~~~ 165 (201)
T KOG4603|consen 163 KYC 165 (201)
T ss_pred HHH
Confidence 543
No 164
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=86.78 E-value=44 Score=40.45 Aligned_cols=162 Identities=25% Similarity=0.302 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 045447 1385 DTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLKQGK 1464 (2058)
Q Consensus 1385 ~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k~~~ 1464 (2058)
..|+.|+..|.+.++++....=++..+ +++|+++.. +.+.-+.+...|..|++.|-...+.+.-..
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSl---EAaLqKQKq-----------K~e~ek~e~s~LkREnq~l~e~c~~lek~r 83 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESL---EAALQKQKQ-----------KVEEEKNEYSALKRENQSLMESCENLEKTR 83 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHH-----------HHHHHhhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 455666666666666665544445444 444443322 222222333333344444444444443111
Q ss_pred -ccCCCcchhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1465 -KSTGDVTGEQVMKEKEEKDTRIQILERTVERQREELKKEKDDNQKEKEKRLKGEKVMLDSAKLADQWKTRISSELEQHK 1543 (2058)
Q Consensus 1465 -~~~~~~~~~q~~ke~~~~~~~~~~~~~~~e~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~e~~~ 1543 (2058)
+-+++ .| . |+..+.-|+-.|..-+ . -|..++++++.+.+.||+.+
T Consensus 84 qKlshd---lq-~-----Ke~qv~~lEgQl~s~K-------------------k------qie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 84 QKLSHD---LQ-V-----KESQVNFLEGQLNSCK-------------------K------QIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred HHhhHH---Hh-h-----hHHHHHHHHHHHHHHH-------------------H------HHHHHHHHHHHHHHHHHHHH
Confidence 11111 00 1 4577888887777632 1 26678889999999999888
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCCcceeeccCccchhhhhhHHHHHHHHHHH
Q 045447 1544 QAVKRLSDELEKLKHTEAGLPEGTSVVQLLSGTNLDDHASSYFSAVESFER 1594 (2058)
Q Consensus 1544 ~~~~~l~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1594 (2058)
++...-...|.-.-.-..+++..-+.+|..+|+-++|+-.-|..-|+.--+
T Consensus 130 ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~ekynkeveerkr 180 (307)
T PF10481_consen 130 QAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEELQEKYNKEVEERKR 180 (307)
T ss_pred HhhccCCccccccCCchhhccCCCChhhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 876644333333333334555555668888999999999999999875433
No 165
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.58 E-value=23 Score=45.25 Aligned_cols=113 Identities=16% Similarity=0.151 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHH
Q 045447 1328 MEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKR 1407 (2058)
Q Consensus 1328 eE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k 1407 (2058)
-.++.|.++. .+|.+ ++++.+++..+.+..+...++.+...+.+.........+++..++.++.+++..+.
T Consensus 332 Sqr~y~e~~~----~e~~q---sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~-- 402 (493)
T KOG0804|consen 332 SQRKYYEQIM----SEYEQ---SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER-- 402 (493)
T ss_pred HHHHHHHHHH----HHHHH---HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3445666443 44433 66666666666555555444444443333333333444444444444444443322
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Q 045447 1408 LSDISQAEAARKLEMEKQKRISAQLRRKCEML----SKEKEESIKENQSLARQLDDLK 1461 (2058)
Q Consensus 1408 ~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~----~~e~~e~~~e~~~l~~q~~~~k 1461 (2058)
.+.. .+.+..-.|..+++.+ +..+..+..+++.|+.|+-++-
T Consensus 403 -----E~n~-------~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 403 -----EENK-------KLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLM 448 (493)
T ss_pred -----HHHH-------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 1222 3333444444444333 3445555666667777776654
No 166
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=86.24 E-value=88 Score=37.94 Aligned_cols=57 Identities=12% Similarity=0.146 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045447 693 VRCLEDDLGKARSEIIALRSERDKLALEAEFAREKLDSVMREAEHQKVEVNGVLARN 749 (2058)
Q Consensus 693 ~k~L~eql~k~r~El~~LrsE~~K~s~q~e~a~ER~e~Lq~n~e~~r~E~~sL~~rn 749 (2058)
...+...|..|...+.+|+.-...+.....-|..-...-+.++.....-...+....
T Consensus 180 ~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~ 236 (264)
T PF06008_consen 180 AEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQ 236 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355777778888888887766666554444444444444445444444444444333
No 167
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=85.77 E-value=18 Score=40.15 Aligned_cols=94 Identities=14% Similarity=0.270 Sum_probs=71.3
Q ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 045447 1269 LLRESNVQLREENKYNFEECQKLREVAQKTKSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNID 1348 (2058)
Q Consensus 1269 lLRESN~tLReE~~~~~~k~qkL~e~lqk~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riD 1348 (2058)
-|-+.+..|+.++.++...+.+|...+..+..++.-++...+.++..+.....-+..+++|..|.+.-++++-.+|
T Consensus 56 ~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~---- 131 (151)
T PF11559_consen 56 DLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQY---- 131 (151)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3445566777777777777777777777777777888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045447 1349 VEDYDRLKVEVRQMEEKL 1366 (2058)
Q Consensus 1349 PeE~e~Lk~Eie~Le~~L 1366 (2058)
--|+++--.+|..|++.|
T Consensus 132 ~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 132 EHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 356666666777776544
No 168
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=85.65 E-value=52 Score=42.50 Aligned_cols=93 Identities=13% Similarity=0.188 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHhhhhh-----------
Q 045447 1315 EIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDY-DRLKVEVRQMEEKLSGKNAEIEETRNLLST----------- 1382 (2058)
Q Consensus 1315 elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~-e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~----------- 1382 (2058)
..++++.++..++.+...-..+.+..-.+++=+||.+- .-....+..|...+....++.......+..
T Consensus 172 ~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (444)
T TIGR03017 172 AALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGSSGKDALPEVI 251 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhh
Confidence 34444555555555555555555555566677777531 111233444444333333333222221111
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHH
Q 045447 1383 KLDTISQLEQELANSRLELSEKEKR 1407 (2058)
Q Consensus 1383 ~~~~~~~l~~~L~~~~~e~~~le~k 1407 (2058)
....++.|+.+|.....++..+..+
T Consensus 252 ~~~~i~~l~~~l~~le~~l~~l~~~ 276 (444)
T TIGR03017 252 ANPIIQNLKTDIARAESKLAELSQR 276 (444)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234556666666666666555443
No 169
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=85.37 E-value=38 Score=40.92 Aligned_cols=103 Identities=24% Similarity=0.345 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 418 YAKYQEAVDALRHEQLGRKESEAVLQRVLYELEEKAGIILDERAEYERMVDAYSAINQKLQNFISEKSSLEKTIQELKAD 497 (2058)
Q Consensus 418 Yt~Yve~k~qL~~Er~en~rLq~~Ld~Iv~ELEeKAP~L~eqR~EyErl~~~~~~Ls~~Leqa~~Erd~leke~r~a~~~ 497 (2058)
..+..++..+|-.=+.+++.=+-+||..=+-|. .|+.-.+.-..+++.|-...+.++..++++++.-.++..+
T Consensus 17 LqKIqelE~QldkLkKE~qQrQfQleSlEAaLq-------KQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshd 89 (307)
T PF10481_consen 17 LQKIQELEQQLDKLKKERQQRQFQLESLEAALQ-------KQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHD 89 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-------HHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHH
Confidence 567777777776555666666667777666554 4444444445555555555666667777777777777777
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 045447 498 LRMRERDYYLAQKEISDLQKQVTVLLKECR 527 (2058)
Q Consensus 498 l~~~eREn~~Lk~Ql~DLsrQV~vLL~Ev~ 527 (2058)
+...+..+..|..|+.-.-.||..|--|+.
T Consensus 90 lq~Ke~qv~~lEgQl~s~Kkqie~Leqelk 119 (307)
T PF10481_consen 90 LQVKESQVNFLEGQLNSCKKQIEKLEQELK 119 (307)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 767677777777777666666666655543
No 170
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=85.28 E-value=1.2e+02 Score=42.32 Aligned_cols=45 Identities=9% Similarity=0.166 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Q 045447 1321 KEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKL 1366 (2058)
Q Consensus 1321 ~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L 1366 (2058)
.-+..|+......+.+...+..+|..-.|. +..++.+|..|+..+
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~-v~~l~~qi~~l~~~i 332 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTMLANHPR-VVAAKSSLADLDAQI 332 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHHHHH
Confidence 445666666677778888888999888886 777888888887654
No 171
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=85.03 E-value=1.8e+02 Score=40.49 Aligned_cols=64 Identities=16% Similarity=0.226 Sum_probs=36.3
Q ss_pred hHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHH
Q 045447 7 DEEMSRLSNDAAAVAAKADAYIRYLQTDFETVKARADAAAITAEQTCSLLEQKFISLQEEFSKVE 71 (2058)
Q Consensus 7 ~eEl~~~~~~~~~i~~K~e~~i~~l~~el~t~KA~~e~~~i~aEQ~~~~lEqk~~sl~~e~~~le 71 (2058)
+++....|.++..- .-.+--|..+-.++..+++........+=--|...++++..+.-++...+
T Consensus 315 ~~~~~~~~~~~sqk-d~~~~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q 378 (980)
T KOG0980|consen 315 EAEPASDPPNASQK-DPRELQIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQ 378 (980)
T ss_pred ccCcccCCcccccC-ChhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34445445432111 23444566667777888887777665555555556666666665554433
No 172
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=84.71 E-value=1.9e+02 Score=40.38 Aligned_cols=96 Identities=19% Similarity=0.228 Sum_probs=54.8
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 045447 939 QLQVGKEELEKLKEEAQANREHMLQYKSI---AQVNEAALKEMETVHENFRTRVEGVKKSLEDELHSLRKRVSELERENI 1015 (2058)
Q Consensus 939 eL~~lk~ELe~lkeeL~~Ak~qveQYK~I---AqsaEeaL~~l~~~~e~yK~e~E~~l~e~e~ei~~L~~ri~eLe~El~ 1015 (2058)
++..+++--+.|+.++..+.+.|..|+.- |-.+|+=...|+ ..+-++|..++.++..|.+| +-+.++...+.
T Consensus 411 E~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLt----dknlnlEekVklLeetv~dl-Ealee~~EQL~ 485 (1243)
T KOG0971|consen 411 ELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLT----DKNLNLEEKVKLLEETVGDL-EALEEMNEQLQ 485 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH----hhccCHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 45566667777777777777777777753 333454444443 24456677777777777777 33556666666
Q ss_pred HhHHHHHHHhhhHHHHHHHHHHHH
Q 045447 1016 LKSEEIASAAGVREDALASAREEI 1039 (2058)
Q Consensus 1016 ~~~eE~~~~~~~~e~ql~~l~~El 1039 (2058)
..+.++....+..-+++.....|+
T Consensus 486 Esn~ele~DLreEld~~~g~~kel 509 (1243)
T KOG0971|consen 486 ESNRELELDLREELDMAKGARKEL 509 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 666555443333333333334443
No 173
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=84.57 E-value=32 Score=43.42 Aligned_cols=133 Identities=9% Similarity=0.133 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHH-HHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHH
Q 045447 1315 EIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVED-YDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQE 1393 (2058)
Q Consensus 1315 elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE-~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~ 1393 (2058)
.+.+++.++..++......+.+....-.+++-+||+. ....-..+..|+.++.....++..+........=.+..++.+
T Consensus 171 a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~ 250 (362)
T TIGR01010 171 TIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQAR 250 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHH
Confidence 4555666666666666777777777778899999986 556666788888888888777776655444445666777777
Q ss_pred HHhhHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1394 LANSRLELSEKEKRLSDI-SQAEAARKLEMEKQKRISAQLRRKCEMLSKEKEESI 1447 (2058)
Q Consensus 1394 L~~~~~e~~~le~k~~d~-~~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~ 1447 (2058)
+......+....+++..- ....+....+++.++..+...+..|+.+-..+.+..
T Consensus 251 i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 251 IKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred HHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766666554444221 112344455666666666666666666655444443
No 174
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=84.48 E-value=29 Score=37.56 Aligned_cols=43 Identities=28% Similarity=0.415 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 045447 107 GEIERLTMEVAELHKSRRQLMELVEQKDLQHSEKGATIKAYLD 149 (2058)
Q Consensus 107 severLr~ei~eLe~ekr~ll~llErk~~e~eel~e~l~~l~e 149 (2058)
..+..|+.++.+|+.--..++.++..|+-++++|..|+.-+.+
T Consensus 68 ~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 68 KEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 4556677777888887778999999999999999988876553
No 175
>PLN02939 transferase, transferring glycosyl groups
Probab=84.39 E-value=2.1e+02 Score=40.80 Aligned_cols=130 Identities=14% Similarity=0.231 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhhcccccCCccccCCCCCCchhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 905 AVAETKLSDMEKRIRPLDAKGDEVDDGSRPSDEVQLQVGKEELEKLKEEAQANREHMLQYKSIAQVNEAALKEMETVHEN 984 (2058)
Q Consensus 905 ~vle~rv~~Le~kL~~~~~k~~s~~~~~~~s~E~eL~~lk~ELe~lkeeL~~Ak~qveQYK~IAqsaEeaL~~l~~~~e~ 984 (2058)
..+..-+.+|+.++-.+.+-+..... .++.-+=..++.|..=|..+.-|+++|-.+.+.+ .+|....+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 335 (977)
T PLN02939 267 SLLDASLRELESKFIVAQEDVSKLSP-------LQYDCWWEKVENLQDLLDRATNQVEKAALVLDQN----QDLRDKVDK 335 (977)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhccc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----hHHHHHHHH
Confidence 44666777777777554332111100 2222355566777777888888888877664332 122222333
Q ss_pred HHHhHHHHH--HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 045447 985 FRTRVEGVK--KSLEDELHSLRKRVSELERENILKSEEIASAAGVREDALASAREEITSLKEE 1045 (2058)
Q Consensus 985 yK~e~E~~l--~e~e~ei~~L~~ri~eLe~El~~~~eE~~~~~~~~e~ql~~l~~El~~Lk~E 1045 (2058)
+...++... +-.-..+..|+++|.-++..+.....++.+-+.-+...+...+.-+..|+++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (977)
T PLN02939 336 LEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEE 398 (977)
T ss_pred HHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333332221 0111133445666666666665555555554444444444444444444444
No 176
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=84.10 E-value=1.2e+02 Score=37.59 Aligned_cols=66 Identities=12% Similarity=0.177 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 045447 946 ELEKLKEEAQANREHMLQYKSIAQVNEAALKEMETVHENFRTRVEGVKKSLEDELHSLRKRVSELERENI 1015 (2058)
Q Consensus 946 ELe~lkeeL~~Ak~qveQYK~IAqsaEeaL~~l~~~~e~yK~e~E~~l~e~e~ei~~L~~ri~eLe~El~ 1015 (2058)
-|+.+.-+|..+..++.....|.+.-+.-+.....-+ ..++..+..+..+.--|++++.++-+...
T Consensus 180 ~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kq----es~eERL~QlqsEN~LLrQQLddA~~K~~ 245 (305)
T PF14915_consen 180 ALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQ----ESLEERLSQLQSENMLLRQQLDDAHNKAD 245 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777778888888888888877666666654432 23445556666666666666666655443
No 177
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=84.10 E-value=1.1e+02 Score=37.29 Aligned_cols=32 Identities=16% Similarity=0.345 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 045447 1529 DQWKTRISSELEQHKQAVKRLSDELEKLKHTE 1560 (2058)
Q Consensus 1529 ~~~~~~~~~~~e~~~~~~~~l~~el~~~~~~~ 1560 (2058)
.+++-.++..++.+.+-+..|..|+.+|..-.
T Consensus 192 ~kei~~~re~i~el~e~I~~L~~eV~~L~~~~ 223 (258)
T PF15397_consen 192 QKEIVQFREEIDELEEEIPQLRAEVEQLQAQA 223 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555555555555555555555533
No 178
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=83.96 E-value=1.3e+02 Score=38.08 Aligned_cols=83 Identities=17% Similarity=0.206 Sum_probs=41.2
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHhHHHHHHHHHHHHHHHHHHH
Q 045447 938 VQLQVGKEELEKLKEEAQANREHMLQYKSIAQVNEAALKEMETVHENFRTRVEGV---KKSLEDELHSLRKRVSELEREN 1014 (2058)
Q Consensus 938 ~eL~~lk~ELe~lkeeL~~Ak~qveQYK~IAqsaEeaL~~l~~~~e~yK~e~E~~---l~e~e~ei~~L~~ri~eLe~El 1014 (2058)
-++.++..+|..++.+|..|..+-.+...--..+-..|....+..+..+.+.... +......+..+.+.-.+|..++
T Consensus 74 fqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl 153 (499)
T COG4372 74 FQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRL 153 (499)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777665554433322223334444444444444444332 2223333444445555555555
Q ss_pred HHhHHH
Q 045447 1015 ILKSEE 1020 (2058)
Q Consensus 1015 ~~~~eE 1020 (2058)
....++
T Consensus 154 ~~l~~q 159 (499)
T COG4372 154 KTLAEQ 159 (499)
T ss_pred HHHHHH
Confidence 443333
No 179
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=83.90 E-value=1e+02 Score=36.81 Aligned_cols=142 Identities=23% Similarity=0.267 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 045447 65 EEFSKVESQNAQLQKSLDDRVNELAEVQSQKHQLHLQ-----LIGKDGEIERLTMEVAELHKSRRQLMELVEQKDLQHSE 139 (2058)
Q Consensus 65 ~e~~~le~e~~eL~~~l~~~~~Ela~~q~~~~~L~~~-----~~~~dseverLr~ei~eLe~ekr~ll~llErk~~e~ee 139 (2058)
.+...+....+.|+..++..=.++..++.++..++.. .+-..-.+..|..+|....+ .|.. -...+..
T Consensus 31 ~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~---~L~~----~q~~l~~ 103 (240)
T PF12795_consen 31 DEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQA---QLQE----LQEQLQQ 103 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHH---HHHH----HHHHHHH
Confidence 3444455555566666655556666666666666443 11111233444444444333 2222 2233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhHHHHHHHHHHHHhHHHHHhhhH--HHHH
Q 045447 140 KGATIKAYLDKIINLTDNAAQREARLAETEAELAR---------AQATCTRLTQGKELIERHNAWLNEELTSKV--NSLV 208 (2058)
Q Consensus 140 l~e~l~~l~eKi~eL~~~~~~~e~rl~e~es~~~s---------~k~~e~RLeQE~eLLqknneWLe~ELk~Kt--eEll 208 (2058)
.+..+..+......+....++...+++++...+.. ..++-..|.=|+.++.-.+.||.-+|..-+ .+|.
T Consensus 104 ~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~ 183 (240)
T PF12795_consen 104 ENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELL 183 (240)
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHH
Confidence 44444444444445556666667777777777654 244556788899999999999999998543 5667
Q ss_pred HHHHh
Q 045447 209 ELRRT 213 (2058)
Q Consensus 209 ~~Rre 213 (2058)
..|++
T Consensus 184 ~~qrd 188 (240)
T PF12795_consen 184 QLQRD 188 (240)
T ss_pred HHHHH
Confidence 77776
No 180
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=83.87 E-value=1.4e+02 Score=38.35 Aligned_cols=165 Identities=19% Similarity=0.184 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 045447 108 EIERLTMEVAELHKSRRQLMELVEQKDLQHSEKGATIKAYLDKIINLTD-NAAQREARLAETEAELARAQATCTRLTQGK 186 (2058)
Q Consensus 108 everLr~ei~eLe~ekr~ll~llErk~~e~eel~e~l~~l~eKi~eL~~-~~~~~e~rl~e~es~~~s~k~~e~RLeQE~ 186 (2058)
+++.+..++.-|+.++-.|-.++-+--.-.++|.++.++..+.|-.+.. .+|+.+.+. ..--+..|.++++
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~--------rm~d~Lrrfq~ek 369 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRV--------RMNDILRRFQEEK 369 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhh
Confidence 4555666666666666555555555555555555555555555444432 112111110 1111223344444
Q ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHhhhhhHH----HHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 045447 187 ELIERHNAWLNEELTSKVNSLVELRRTHADLEA----DMSAKLSDVERQFSECSSSLNWNKERVRELEIKLSSLQEEFCS 262 (2058)
Q Consensus 187 eLLqknneWLe~ELk~KteEll~~Rre~~~~e~----~l~aki~eLqre~~E~~ssL~~sk~rv~eLe~Kl~~lqe~L~~ 262 (2058)
+-.+.=++-|-. ++..+|+.+...+. .-++++.+|..+...++.-....++.+.+|....-.+.- ..
T Consensus 370 eatqELieelrk-------elehlr~~kl~~a~p~rgrsSaRe~eleqevkrLrq~nr~l~eqneelngtilTls~--q~ 440 (502)
T KOG0982|consen 370 EATQELIEELRK-------ELEHLRRRKLVLANPVRGRSSAREIELEQEVKRLRQPNRILSEQNEELNGTILTLST--QF 440 (502)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHhhccccCchhHHHHHHHHHHHHhccccchhhhhhhhhhhhhhhHHH--HH
Confidence 444333332222 23344444433221 224566666666666666555556666666655443331 11
Q ss_pred hHH--HHHHHHHHHHHHHH--HHHHHHHHHH
Q 045447 263 SKD--AAAANEERFSTELS--TVNKLVELYK 289 (2058)
Q Consensus 263 ~ke--~~a~~ee~fr~EL~--aq~RLaeLyk 289 (2058)
++. .....-.+|-+||+ ++.-|.+.|+
T Consensus 441 lkn~ha~~~~~~Slaaeid~~sqdeLmqafq 471 (502)
T KOG0982|consen 441 LKNWHATFSLFFSLAAEIDEMSQDELMQAFQ 471 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 221 23334456666666 4555555553
No 181
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=83.00 E-value=1.1e+02 Score=36.31 Aligned_cols=90 Identities=21% Similarity=0.233 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH--
Q 045447 1053 IVNLEVQVSALKEDLEKEHERRQAAQANYERQVILQSETIQELTKTSQALASLQEQASELRKLADA----LKAENSEL-- 1126 (2058)
Q Consensus 1053 ~~~~E~q~~~l~~DL~~Q~~~a~eAQ~nYErElvLHAe~IqeL~k~~e~~~~lq~e~~elr~~aes----ak~~L~e~-- 1126 (2058)
+..|...-..|+.-+..-......-+++|.. |-.||+ .. +.....++..++....+ .++.|.-.
T Consensus 106 i~~~k~NEE~Lkk~~~ey~~~l~~~eqry~a-LK~hAe--ek-------L~~ANeei~~v~~~~~~e~~aLqa~lkk~e~ 175 (207)
T PF05010_consen 106 IEGYKKNEETLKKCIEEYEERLKKEEQRYQA-LKAHAE--EK-------LEKANEEIAQVRSKHQAELLALQASLKKEEM 175 (207)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HH-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3333333444555555545555566777873 333332 22 33333344444443321 11111111
Q ss_pred -HhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1127 -KSKWELEKSVLEKLKNEAEEKYDEVN 1152 (2058)
Q Consensus 1127 -e~SWeeqk~~Le~Ei~el~~R~eDL~ 1152 (2058)
-.|.+..-.+-.++..+|-+=||||-
T Consensus 176 ~~~SLe~~LeQK~kEn~ELtkICDeLI 202 (207)
T PF05010_consen 176 KVQSLEESLEQKTKENEELTKICDELI 202 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12333333444566677777777774
No 182
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=82.69 E-value=1.6e+02 Score=38.08 Aligned_cols=22 Identities=5% Similarity=0.060 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhcccccCCccc
Q 045447 906 VAETKLSDMEKRIRPLDAKGDE 927 (2058)
Q Consensus 906 vle~rv~~Le~kL~~~~~k~~s 927 (2058)
-++.++..+..++..+..++..
T Consensus 175 fl~~ql~~~~~~l~~ae~~l~~ 196 (444)
T TIGR03017 175 WFVQQIAALREDLARAQSKLSA 196 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888777666544
No 183
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=82.67 E-value=2.5e+02 Score=40.23 Aligned_cols=90 Identities=19% Similarity=0.299 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhH
Q 045447 1309 LRERQIEIEACKKEMEKQRMEKENLEKRVSELLQR--CRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDT 1386 (2058)
Q Consensus 1309 i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeK--y~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~ 1386 (2058)
|.+++..+..+...++.++-....|+.+..+|=+- ...+|-..++.|..+|.....++....+.++.++..+......
T Consensus 691 l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e 770 (1074)
T KOG0250|consen 691 LEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELE 770 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444555666666666888888888773 6678888899999998888887777777776666655555555
Q ss_pred HHHHHHHHHhhH
Q 045447 1387 ISQLEQELANSR 1398 (2058)
Q Consensus 1387 ~~~l~~~L~~~~ 1398 (2058)
.+.++..-+..+
T Consensus 771 ~~e~~~~~~~~~ 782 (1074)
T KOG0250|consen 771 AQELEEYYAAGR 782 (1074)
T ss_pred HHHHHHHHHHHH
Confidence 454444444433
No 184
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=82.53 E-value=2.5e+02 Score=40.18 Aligned_cols=87 Identities=10% Similarity=0.171 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 045447 692 RVRCLEDDLGKARSEIIALRSERDKLALEAEFARE--KLDSVMREAEHQKVEVNGVLARNVEFSQLVVDYQRKLRETSES 769 (2058)
Q Consensus 692 ~~k~L~eql~k~r~El~~LrsE~~K~s~q~e~a~E--R~e~Lq~n~e~~r~E~~sL~~rn~eLs~~~~k~e~~l~~~~e~ 769 (2058)
-+|++..++++++.++.+.|..+-..-++-.|-.+ ++.....-++.+..++..+.+....+.....-+......+.+.
T Consensus 405 llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~ 484 (1041)
T KOG0243|consen 405 LLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEE 484 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 47899999999999998888766554444444211 3334445555666666666665555555544333333444444
Q ss_pred HHHHHHHHH
Q 045447 770 LNAAQELSR 778 (2058)
Q Consensus 770 L~aaeel~~ 778 (2058)
+..++..+.
T Consensus 485 ~~~~k~~L~ 493 (1041)
T KOG0243|consen 485 KEKLKSKLQ 493 (1041)
T ss_pred HHHHHHHHH
Confidence 555554333
No 185
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.44 E-value=1.3e+02 Score=36.85 Aligned_cols=35 Identities=23% Similarity=0.312 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045447 1136 VLEKLKNEAEEKYDEVNEQNKILHSRLEALHIQLT 1170 (2058)
Q Consensus 1136 ~Le~Ei~el~~R~eDL~~QN~LLH~QLE~lt~Qia 1170 (2058)
.|+.--..++..++.|..-+.-||.++..|..|.+
T Consensus 159 ~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~ 193 (265)
T COG3883 159 SLEEKQAALEDKLETLVALQNELETQLNSLNSQKA 193 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444555555555555544
No 186
>PF13166 AAA_13: AAA domain
Probab=82.32 E-value=2.2e+02 Score=39.29 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=18.6
Q ss_pred HHhHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHh
Q 045447 180 TRLTQGKELIERHNAWLNEELTSKVNSLVELRRT 213 (2058)
Q Consensus 180 ~RLeQE~eLLqknneWLe~ELk~KteEll~~Rre 213 (2058)
.+++..+..+.+...=+..+++....++..++..
T Consensus 420 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~ 453 (712)
T PF13166_consen 420 KELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQ 453 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555554
No 187
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=82.26 E-value=40 Score=37.39 Aligned_cols=83 Identities=24% Similarity=0.305 Sum_probs=42.9
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1372 EIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQ 1451 (2058)
Q Consensus 1372 e~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~ 1451 (2058)
++.++...+......+..++.+++........+..++..+.......+.++.+++..+.+.+.+|. -++--...|..
T Consensus 67 d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~---~e~rkke~E~~ 143 (151)
T PF11559_consen 67 DIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYE---HELRKKEREIE 143 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 333333333333344444445555444445556666666644444555555566666666665554 44444555666
Q ss_pred HHHHHH
Q 045447 1452 SLARQL 1457 (2058)
Q Consensus 1452 ~l~~q~ 1457 (2058)
.|+.++
T Consensus 144 kLk~rL 149 (151)
T PF11559_consen 144 KLKERL 149 (151)
T ss_pred HHHHHh
Confidence 666554
No 188
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=81.83 E-value=1.1e+02 Score=40.32 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHH
Q 045447 1352 YDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELS 1402 (2058)
Q Consensus 1352 ~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~ 1402 (2058)
+..+...+..+...+.++.+.++.......++...+.+.++.|...|+.++
T Consensus 69 l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA 119 (475)
T PRK10361 69 VRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLA 119 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444445544445555666667777777777777776
No 189
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=81.73 E-value=1.7e+02 Score=37.56 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=25.9
Q ss_pred HHHHHHH---HHHH-HHHHHHHHHHHHHHHHHhhHH
Q 045447 19 AVAAKAD---AYIR-YLQTDFETVKARADAAAITAE 50 (2058)
Q Consensus 19 ~i~~K~e---~~i~-~l~~el~t~KA~~e~~~i~aE 50 (2058)
-|+.|++ .||. -|...+.+++...+...+..|
T Consensus 89 ~IQaraeqeeEfisntLlkkiqal~keketla~~Ye 124 (552)
T KOG2129|consen 89 EIQARAEQEEEFISNTLLKKIQALFKEKETLATVYE 124 (552)
T ss_pred HHhhccchHHHHHHHHHHHHHHHhhccccccchhhh
Confidence 4788888 9999 688899999888888776654
No 190
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=81.61 E-value=23 Score=38.34 Aligned_cols=99 Identities=24% Similarity=0.333 Sum_probs=64.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 045447 1346 NIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQ 1425 (2058)
Q Consensus 1346 riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~ 1425 (2058)
..++--+++|...|..++.++.....++ ..|.......+.++..+...+.++ ....+++..+
T Consensus 12 ~~~~~~ve~L~s~lr~~E~E~~~l~~el--------------~~l~~~r~~l~~Eiv~l~~~~e~~----~~~~~~~~~L 73 (120)
T PF12325_consen 12 GPSVQLVERLQSQLRRLEGELASLQEEL--------------ARLEAERDELREEIVKLMEENEEL----RALKKEVEEL 73 (120)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 3445567777777777765544444333 233333333334444444443333 3456777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 045447 1426 KRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLKQ 1462 (2058)
Q Consensus 1426 ~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k~ 1462 (2058)
+..++.++.++.++=.=++++..+++.|+--|.++|.
T Consensus 74 ~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 74 EQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 8888889999998888888888899999998888884
No 191
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=81.38 E-value=2.2e+02 Score=38.76 Aligned_cols=139 Identities=17% Similarity=0.245 Sum_probs=79.6
Q ss_pred hHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhhhhhcHHHHHHHHHHHHHHH
Q 045447 1193 SLQSVISFLRNRKSIAETEVALLTTEKLRLQKQLESALKAAENAQ----ASLTTERANSRAMLLTEEEIKSLKLQVRELN 1268 (2058)
Q Consensus 1193 ~L~eVI~yLRREKEIae~qlel~~qE~~RLqqQle~~qkqLdEar----~~L~~Ere~s~t~~~s~e~hkeLmeKleqLN 1268 (2058)
.+++-|+--++-.+-.-.+++-+..++..|+..|+++...+.... .+|+...+++|.... ++..+--+|.
T Consensus 517 k~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~------e~~~k~kq~k 590 (786)
T PF05483_consen 517 KQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIEC------EILKKEKQMK 590 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHH------HHhhhHHHHH
Confidence 345555555555555556667777788888888887665554444 444444444543322 3334445555
Q ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 045447 1269 LLRESNVQLREENKYNFEECQKLREVAQKTKSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRC 1344 (2058)
Q Consensus 1269 lLRESN~tLReE~~~~~~k~qkL~e~lqk~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy 1344 (2058)
+|.-==..||-... .+...+.+ +++ +-.-|..++.--..++..+...|..|+.+.+..++.......+|
T Consensus 591 ~lenk~~~LrKqvE---nk~K~iee-Lqq---eNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~ 659 (786)
T PF05483_consen 591 ILENKCNNLRKQVE---NKNKNIEE-LQQ---ENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKY 659 (786)
T ss_pred HHHHHHHHHHHHHH---HHHhHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 55443344555332 12222222 222 33445555555555666777788888888888888887777777
No 192
>PRK10884 SH3 domain-containing protein; Provisional
Probab=81.22 E-value=10 Score=44.51 Aligned_cols=66 Identities=12% Similarity=0.302 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045447 1099 SQALASLQEQASELRKLADALKAENSELKSKWELEKSVLEKLKNEAEEKYDEVNEQNKILHSRLEALHIQLTE 1171 (2058)
Q Consensus 1099 ~e~~~~lq~e~~elr~~aesak~~L~e~e~SWeeqk~~Le~Ei~el~~R~eDL~~QN~LLH~QLE~lt~Qia~ 1171 (2058)
+..+..+++++.+++ ..|.....+|..+...+.+.+...+..+.+|..+|.-|..||+.+..++..
T Consensus 92 ~~rlp~le~el~~l~-------~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 92 RTRVPDLENQVKTLT-------DKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555554 444555567889999999999999999999999999999999888877643
No 193
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=81.08 E-value=1.3e+02 Score=36.08 Aligned_cols=52 Identities=21% Similarity=0.258 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 045447 963 QYKSIAQVNEAALKEMETVHENFRTRVEGVKKSLEDELHSLRKRVSELEREN 1014 (2058)
Q Consensus 963 QYK~IAqsaEeaL~~l~~~~e~yK~e~E~~l~e~e~ei~~L~~ri~eLe~El 1014 (2058)
.||.-.+.+-+.|.++.+..-+|-.+++..+..++....+|..++.-|.-|.
T Consensus 24 ~ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~ 75 (333)
T KOG1853|consen 24 EYKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQ 75 (333)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666667777777766666665555555555544444444444444333
No 194
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=80.93 E-value=1.5e+02 Score=36.70 Aligned_cols=41 Identities=24% Similarity=0.316 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 045447 276 TELSTVNKLVELYKESSEEWSRKAGELEGVIKALETQLAQV 316 (2058)
Q Consensus 276 ~EL~aq~RLaeLyke~aee~~~k~~ELe~~ikeLe~~L~q~ 316 (2058)
.+.+-..+-++-|....-+...++.+|...+..++..+..+
T Consensus 200 ~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~ 240 (294)
T COG1340 200 EEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELREL 240 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666667777666666666655544
No 195
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=80.71 E-value=1.4e+02 Score=35.98 Aligned_cols=75 Identities=13% Similarity=0.147 Sum_probs=40.7
Q ss_pred CCCCChHHHhhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 2 PLFVSDEEMSRLSNDAAAVAAKADAYIRYLQ---TDFETVKARADAAAITAEQTCSLLEQKFISLQEEFSKVESQNAQLQ 78 (2058)
Q Consensus 2 ~~~~s~eEl~~~~~~~~~i~~K~e~~i~~l~---~el~t~KA~~e~~~i~aEQ~~~~lEqk~~sl~~e~~~le~e~~eL~ 78 (2058)
|-|-|+.|=.++=++++ .++--.+-+.+ .+|.+--+..++ ..|-++.++|.+..++..+...+.-+...++
T Consensus 6 ~~fss~~eE~~ywk~l~---~~ykq~f~~~reEl~EFQegSrE~Ea---elesqL~q~etrnrdl~t~nqrl~~E~e~~K 79 (333)
T KOG1853|consen 6 KTFSSDLEEDQYWKLLH---HEYKQHFLQMREELNEFQEGSREIEA---ELESQLDQLETRNRDLETRNQRLTTEQERNK 79 (333)
T ss_pred ccccchhhHHHHHhhhH---HHHHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778877777777753 22222221112 344444444332 2355566677777777666666666655555
Q ss_pred HHHH
Q 045447 79 KSLD 82 (2058)
Q Consensus 79 ~~l~ 82 (2058)
..++
T Consensus 80 ek~e 83 (333)
T KOG1853|consen 80 EKQE 83 (333)
T ss_pred HHHH
Confidence 5443
No 196
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=80.49 E-value=93 Score=39.68 Aligned_cols=78 Identities=15% Similarity=0.258 Sum_probs=61.4
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045447 1382 TKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLK 1461 (2058)
Q Consensus 1382 ~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k 1461 (2058)
.....+..+..+++..-..+...|+-||.- ...+.++|-..+..+...+.+|.....-..++..++..+..+++..|
T Consensus 238 ~~~~~L~kl~~~i~~~lekI~sREk~iN~q---le~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK 314 (359)
T PF10498_consen 238 ETKSQLDKLQQDISKTLEKIESREKYINNQ---LEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVK 314 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 333444556666666666677777777765 77788899999999999999999998888888888888888888888
Q ss_pred c
Q 045447 1462 Q 1462 (2058)
Q Consensus 1462 ~ 1462 (2058)
+
T Consensus 315 ~ 315 (359)
T PF10498_consen 315 Q 315 (359)
T ss_pred H
Confidence 4
No 197
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=80.45 E-value=1.7e+02 Score=36.80 Aligned_cols=135 Identities=21% Similarity=0.303 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHH
Q 045447 110 ERLTMEVAELHKSRRQLMELVEQKDLQHSEKGATIKAYLDKIINLTDNAAQREARLAETE----AELARAQATCTRLTQG 185 (2058)
Q Consensus 110 erLr~ei~eLe~ekr~ll~llErk~~e~eel~e~l~~l~eKi~eL~~~~~~~e~rl~e~e----s~~~s~k~~e~RLeQE 185 (2058)
+.|...+..|..++..|..-++.-+.-+.. +.++...|..+...+.....+++ ..+..++.+...+.++
T Consensus 147 ~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~-------l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~e 219 (312)
T smart00787 147 EGLDENLEGLKEDYKLLMKELELLNSIKPK-------LRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQE 219 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 344445555555555544433333332333 23333333444444444434432 2344444444555555
Q ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 045447 186 KELIERHNAWLNEELTSKVNSLVELRRTHADLEADMSAKLSDVERQFSECSSSLNWNKERVRELEIKLSSLQE 258 (2058)
Q Consensus 186 ~eLLqknneWLe~ELk~KteEll~~Rre~~~~e~~l~aki~eLqre~~E~~ssL~~sk~rv~eLe~Kl~~lqe 258 (2058)
+...++...=+..+|......+-....++.. +...|+++++..++++. ++...+..|..++..++.
T Consensus 220 i~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e----~~~~I~~ae~~~~~~r~---~t~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 220 IMIKVKKLEELEEELQELESKIEDLTNKKSE----LNTEIAEAEKKLEQCRG---FTFKEIEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHH
Confidence 5555555555555555544444444333322 44456667776666655 455566667666665553
No 198
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=80.45 E-value=1.6e+02 Score=36.71 Aligned_cols=128 Identities=17% Similarity=0.225 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 045447 687 EKMAERVRCLEDDLGKARSEIIALRSERDKLALEAEFAREKLDSVMR----EAEHQKVEVNGVLARNVEFSQLVVDYQRK 762 (2058)
Q Consensus 687 ~q~~e~~k~L~eql~k~r~El~~LrsE~~K~s~q~e~a~ER~e~Lq~----n~e~~r~E~~sL~~rn~eLs~~~~k~e~~ 762 (2058)
..+..++|.|++++..+|.|...|..+... ..+...+|.. .|......+..|+.-...-..-..+|+..
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~-------~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEE 235 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDT-------YEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEE 235 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhh-------ccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888988888888888887765442 1222222222 22222223333332222222223334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 763 LRETSESLNAAQELSRKLAMEVSVLKHEKEMLSNAEQRAYDEVRSLSQRVYRLQASLDT 821 (2058)
Q Consensus 763 l~~~~e~L~aaeel~~~L~~E~~nLKaEK~Llk~~E~RL~~EnesL~~e~~rLqs~L~t 821 (2058)
|-.+...++.+...+.++-.+.+.|..--..-|.++.+|..|+..|.++-.-..++|..
T Consensus 236 It~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~E 294 (306)
T PF04849_consen 236 ITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHE 294 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555666555555555666666666665555544444444433
No 199
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=80.12 E-value=1.3e+02 Score=40.45 Aligned_cols=43 Identities=19% Similarity=0.292 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 045447 1422 MEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLKQGK 1464 (2058)
Q Consensus 1422 ~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k~~~ 1464 (2058)
++.+...+..++....+.......+......+++++..+....
T Consensus 303 L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~ 345 (563)
T TIGR00634 303 LNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSD 345 (563)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCH
Confidence 3445555555555445555677778888888888888877544
No 200
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=79.80 E-value=14 Score=42.76 Aligned_cols=87 Identities=24% Similarity=0.328 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045447 55 LLEQKFISLQEEFSKVESQNAQLQKSLDDRVNELAEVQSQKHQLHLQLIGKDGEIERLTMEVAELHKSRRQLMELVEQKD 134 (2058)
Q Consensus 55 ~lEqk~~sl~~e~~~le~e~~eL~~~l~~~~~Ela~~q~~~~~L~~~~~~~dseverLr~ei~eLe~ekr~ll~llErk~ 134 (2058)
.++.++..+..++..+.....++...|-... .++..+...+......+..|..++..|....+++-..|.-++
T Consensus 71 ~le~~~~~l~~ELael~r~~~el~~~L~~~~-------~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~ 143 (194)
T PF08614_consen 71 SLEQKLAKLQEELAELYRSKGELAQQLVELN-------DELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKN 143 (194)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccc-------cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666665555554333 333444445555566677777777777777777776666666
Q ss_pred hhhhhHHHHHHHHH
Q 045447 135 LQHSEKGATIKAYL 148 (2058)
Q Consensus 135 ~e~eel~e~l~~l~ 148 (2058)
..++.+++++..++
T Consensus 144 k~~e~l~DE~~~L~ 157 (194)
T PF08614_consen 144 KANEILQDELQALQ 157 (194)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666665544
No 201
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=79.75 E-value=1.2e+02 Score=42.13 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1094 ELTKTSQALASLQEQASELRKLADAL 1119 (2058)
Q Consensus 1094 eL~k~~e~~~~lq~e~~elr~~aesa 1119 (2058)
+|...+.++..++..+.+++...+..
T Consensus 640 EL~~~~~~l~~l~~si~~lk~k~~~Q 665 (717)
T PF10168_consen 640 ELERMKDQLQDLKASIEQLKKKLDYQ 665 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55656666666666666666655543
No 202
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=79.27 E-value=2.4e+02 Score=38.00 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=13.3
Q ss_pred cccchHHHHHHhHHHHHHHHHhH
Q 045447 568 TFKDINGLVEQNVQLRSLVRNLS 590 (2058)
Q Consensus 568 tFkdI~ELQeQNqeLL~vvReLs 590 (2058)
|+..|..| ..+.+..-+.|-||
T Consensus 524 t~s~i~~L-~~~~r~~EiArml~ 545 (563)
T TIGR00634 524 TATRVRPL-SGEERVAELARMLA 545 (563)
T ss_pred EEEEEEEC-CccHHHHHHHHHhC
Confidence 56666666 44566666666663
No 203
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=78.96 E-value=1.5e+02 Score=35.46 Aligned_cols=177 Identities=18% Similarity=0.212 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 87 ELAEVQSQKHQLHLQLIGKDGEIERLTMEVAELHKSRRQLMELVEQKDLQHSEKGATIKAYLDKIINLTDNAAQREARLA 166 (2058)
Q Consensus 87 Ela~~q~~~~~L~~~~~~~dseverLr~ei~eLe~ekr~ll~llErk~~e~eel~e~l~~l~eKi~eL~~~~~~~e~rl~ 166 (2058)
++.....+...|+..+..-..++..++.+|..+...-.....+. -+-.+..+.++|..........+..+.
T Consensus 32 ~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~---------~~~s~~eLeq~l~~~~~~L~~~q~~l~ 102 (240)
T PF12795_consen 32 EIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEIL---------ANLSLEELEQRLSQEQAQLQELQEQLQ 102 (240)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCc---------ccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555666677777766666644200011110 011344455566666666666666677
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhhh--H--HHHHHHHHhhhhhHHHHHhhHHHHHHHHHHhhhhhhhh
Q 045447 167 ETEAELARAQATCTRLTQGKELIERHNAWLNEELTSK--V--NSLVELRRTHADLEADMSAKLSDVERQFSECSSSLNWN 242 (2058)
Q Consensus 167 e~es~~~s~k~~e~RLeQE~eLLqknneWLe~ELk~K--t--eEll~~Rre~~~~e~~l~aki~eLqre~~E~~ssL~~s 242 (2058)
.+++.+.....+..|+.+.+.-.+....=++..|+.- + ..+...|+
T Consensus 103 ~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~------------------------------ 152 (240)
T PF12795_consen 103 QENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQR------------------------------ 152 (240)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHH------------------------------
Confidence 7777777777777777777766666665555555531 0 11111111
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 045447 243 KERVRELEIKLSSLQEEFCSSKDAAAANEERFSTELSTVNKLVELYKESSEEWSRKAGELEGVIKALETQLAQVQ 317 (2058)
Q Consensus 243 k~rv~eLe~Kl~~lqe~L~~~ke~~a~~ee~fr~EL~aq~RLaeLyke~aee~~~k~~ELe~~ikeLe~~L~q~e 317 (2058)
..|...+..+.- ...-++.||.+...+-+||+-.-+-...++.-++..+..|+..++...
T Consensus 153 ----~~l~ae~~~l~~-----------~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R 212 (240)
T PF12795_consen 153 ----WLLQAELAALEA-----------QIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKR 212 (240)
T ss_pred ----HHHHHHHHHHHH-----------HHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111111 122456788899999999999999999999999888888888887643
No 204
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=78.47 E-value=20 Score=40.53 Aligned_cols=89 Identities=24% Similarity=0.287 Sum_probs=55.5
Q ss_pred HHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 045447 1265 RELNLLRESNVQLREENKYNFEECQKLREVAQKTKSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRC 1344 (2058)
Q Consensus 1265 eqLNlLRESN~tLReE~~~~~~k~qkL~e~lqk~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy 1344 (2058)
++|..|-.-...||++...+...+..|..++..+.+. + ..+.+...|..|+.++.....|...|=+..
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~-------~-----t~~el~~~i~~l~~e~~~l~~kL~~l~~~~ 139 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSE-------P-----TNEELREEIEELEEEIEELEEKLEKLRSGS 139 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------C-----CHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3455555556666666665555555555544443211 1 112234556666666667777777777777
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 045447 1345 RNIDVEDYDRLKVEVRQMEEK 1365 (2058)
Q Consensus 1345 ~riDPeE~e~Lk~Eie~Le~~ 1365 (2058)
..|+|+|..++......+...
T Consensus 140 ~~vs~ee~~~~~~~~~~~~k~ 160 (169)
T PF07106_consen 140 KPVSPEEKEKLEKEYKKWRKE 160 (169)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 789999999999988777653
No 205
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=78.37 E-value=2.1e+02 Score=36.78 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1104 SLQEQASELRKLADALKAENSELKSKWELEKSVLEKLKNEAEEKYDEV 1151 (2058)
Q Consensus 1104 ~lq~e~~elr~~aesak~~L~e~e~SWeeqk~~Le~Ei~el~~R~eDL 1151 (2058)
.|......+......+...|...+.+|.+-...++..+..++.|+..|
T Consensus 340 ~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~i~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 340 ELESQQSDLQSQLKKWEELLNKVEEKFKENMETIEKNVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334444555556667777888888888888888888888898888876
No 206
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=77.99 E-value=2.3e+02 Score=37.08 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 045447 334 LEKEAMDLKEKLEKCEAEIESS 355 (2058)
Q Consensus 334 lEke~~eLkekl~~lE~Ele~~ 355 (2058)
+..++.+++..+..++..+..+
T Consensus 289 ~~~~l~~~~~~l~~~~~~l~~a 310 (457)
T TIGR01000 289 VKQEITDLNQKLLELESKIKSL 310 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555443
No 207
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=77.61 E-value=85 Score=35.96 Aligned_cols=7 Identities=43% Similarity=0.824 Sum_probs=2.6
Q ss_pred HHHhhhH
Q 045447 1405 EKRLSDI 1411 (2058)
Q Consensus 1405 e~k~~d~ 1411 (2058)
..++..+
T Consensus 129 ~~~l~~l 135 (191)
T PF04156_consen 129 EERLDSL 135 (191)
T ss_pred HHHHHHH
Confidence 3333333
No 208
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=77.56 E-value=21 Score=41.40 Aligned_cols=42 Identities=19% Similarity=0.128 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045447 1420 LEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLK 1461 (2058)
Q Consensus 1420 ~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k 1461 (2058)
.-++.++.++..++-.+..+.+.+..+.+|+..|-+..=+.|
T Consensus 144 k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k 185 (194)
T PF08614_consen 144 KANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRK 185 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444555555555555555444433
No 209
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=77.55 E-value=1.8e+02 Score=35.41 Aligned_cols=115 Identities=19% Similarity=0.278 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHhh---------hhHHHHHHHhhhhhhhhHH----HHHHHHHHhhHHHHHHHHHHhhhHHH
Q 045447 1347 IDVEDYDRLKVEVRQMEEKLSG---------KNAEIEETRNLLSTKLDTI----SQLEQELANSRLELSEKEKRLSDISQ 1413 (2058)
Q Consensus 1347 iDPeE~e~Lk~Eie~Le~~L~~---------~~ae~e~~~~~l~~~~~~~----~~l~~~L~~~~~e~~~le~k~~d~~~ 1413 (2058)
.++.++.++..+++.+=.+++. ...|+..+...|..-+..+ ...+.-...++..++....|+.|+..
T Consensus 120 ~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~ 199 (264)
T PF06008_consen 120 LPSEDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRD 199 (264)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777776655554432 2233433444444333333 23333334456666777888888755
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045447 1414 AEAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLK 1461 (2058)
Q Consensus 1414 ~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k 1461 (2058)
-.+............+...+..++.+.+.+..+..........|...+
T Consensus 200 ~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~a~ 247 (264)
T PF06008_consen 200 LLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETLKEAE 247 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555556666666777777777888878877777777665
No 210
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=76.95 E-value=74 Score=44.08 Aligned_cols=121 Identities=16% Similarity=0.184 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHH-HHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHH
Q 045447 1315 EIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVE-DYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQE 1393 (2058)
Q Consensus 1315 elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPe-E~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~ 1393 (2058)
.++++++++..++.+......+.+..-.+++-+|+. +...+-..+.+|+.++.........+........-.++.++..
T Consensus 268 a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v~~l~~~ 347 (726)
T PRK09841 268 SLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDHPTYRALLEK 347 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchHHHHHHH
Confidence 344555555555555555555666666666767763 4455555566666555444433333344444455556666666
Q ss_pred HHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1394 LANSRLELSEKEKRLSDISQAEAARKLEMEKQKRISAQLRRKCEML 1439 (2058)
Q Consensus 1394 L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~ 1439 (2058)
+..+..+++.+..++..+ ...+.++-.+++.+...+.-|..+
T Consensus 348 ~~~L~~~~~~l~~~~~~~----p~~e~~~~~L~R~~~~~~~lY~~l 389 (726)
T PRK09841 348 RQTLEQERKRLNKRVSAM----PSTQQEVLRLSRDVEAGRAVYLQL 389 (726)
T ss_pred HHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555554444433 222334444444444444444443
No 211
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=76.85 E-value=1.8e+02 Score=35.16 Aligned_cols=30 Identities=30% Similarity=0.367 Sum_probs=22.5
Q ss_pred CCCHH---HHHHHHHHHHHHHHHHhhhhHHHHH
Q 045447 1346 NIDVE---DYDRLKVEVRQMEEKLSGKNAEIEE 1375 (2058)
Q Consensus 1346 riDPe---E~e~Lk~Eie~Le~~L~~~~ae~e~ 1375 (2058)
=+||+ .|.+||.+++.-+.+|.+...++..
T Consensus 170 llDPAinl~F~rlK~ele~tk~Klee~QnelsA 202 (330)
T KOG2991|consen 170 LLDPAINLFFLRLKGELEQTKDKLEEAQNELSA 202 (330)
T ss_pred hhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhe
Confidence 47886 7889999988888777766666543
No 212
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=76.70 E-value=2.1e+02 Score=35.83 Aligned_cols=22 Identities=14% Similarity=0.410 Sum_probs=17.0
Q ss_pred HhHHHhHHHHHHHHHHHHHHHH
Q 045447 938 VQLQVGKEELEKLKEEAQANRE 959 (2058)
Q Consensus 938 ~eL~~lk~ELe~lkeeL~~Ak~ 959 (2058)
..+..|+.++..|+.+|..+..
T Consensus 229 shI~~Lr~EV~RLR~qL~~sq~ 250 (310)
T PF09755_consen 229 SHIRSLRQEVSRLRQQLAASQQ 250 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888888888888876543
No 213
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=76.06 E-value=57 Score=34.68 Aligned_cols=71 Identities=11% Similarity=0.265 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 045447 1354 RLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEK 1424 (2058)
Q Consensus 1354 ~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~ 1424 (2058)
.|......+...|..+...++..+.+-..+..+...|+.-+.........+..++++++..++-+...++.
T Consensus 6 ~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 6 ALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555556555554444444444455555555555566666666665555555555554
No 214
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=76.01 E-value=68 Score=38.74 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 045447 1536 SSELEQHKQAVKRLSDELEKLKH 1558 (2058)
Q Consensus 1536 ~~~~e~~~~~~~~l~~el~~~~~ 1558 (2058)
....+.++..|+.|+.+|+.+|.
T Consensus 181 ~EKnk~lq~QL~~L~~EL~~~kd 203 (246)
T PF00769_consen 181 AEKNKRLQEQLKELKSELEQLKD 203 (246)
T ss_dssp HHH-HHHHHHHHHHHHHHHTTB-
T ss_pred HHhhHHHHHHHHHHHHHHHHHhh
Confidence 35555677778888888887775
No 215
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=75.97 E-value=2.6e+02 Score=36.53 Aligned_cols=133 Identities=18% Similarity=0.242 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 20 VAAKADAYIRYLQTDFETVKARADAAA------ITAEQTCSLLEQKFISLQEEFSKVESQNAQLQKSLDDRVNELAEVQS 93 (2058)
Q Consensus 20 i~~K~e~~i~~l~~el~t~KA~~e~~~------i~aEQ~~~~lEqk~~sl~~e~~~le~e~~eL~~~l~~~~~Ela~~q~ 93 (2058)
+...++.|+..+..+++.+|...+..- ...-|....++.||..++.+..+++.-...++..-.....-
T Consensus 258 lk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~------ 331 (622)
T COG5185 258 LKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGK------ 331 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchH------
Confidence 456778888888888888888877632 12346666788899999999998888888777654433333
Q ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 045447 94 QKHQLHLQLIGKDGEIERLTMEVAELHKSRRQ---LMELVEQKDLQHSEKGATIKAYLDKIINLTDNAA 159 (2058)
Q Consensus 94 ~~~~L~~~~~~~dseverLr~ei~eLe~ekr~---ll~llErk~~e~eel~e~l~~l~eKi~eL~~~~~ 159 (2058)
+.+|+.....+..++..|+..+++|+.--+. ..+-.+.-++|-+.|..+|....-++..|....-
T Consensus 332 -l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~ 399 (622)
T COG5185 332 -LEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVK 399 (622)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3455555667778888888888888762111 1122333455666666666665555555554443
No 216
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=75.94 E-value=1.7e+02 Score=34.43 Aligned_cols=85 Identities=12% Similarity=0.163 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHH
Q 045447 1314 IEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQE 1393 (2058)
Q Consensus 1314 ~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~ 1393 (2058)
+....+..++..+......|..|+..-|.+- +.+=-...-..+..++..+......+..+...+......+..++.+
T Consensus 51 a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g---~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~k 127 (221)
T PF04012_consen 51 ANQKRLERKLDEAEEEAEKWEKQAELALAAG---REDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAK 127 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333446667777777889999999998843 3333334444444444433333333333333333333333333333
Q ss_pred HHhhHHHH
Q 045447 1394 LANSRLEL 1401 (2058)
Q Consensus 1394 L~~~~~e~ 1401 (2058)
+.+.+..+
T Consensus 128 l~e~k~k~ 135 (221)
T PF04012_consen 128 LEELKSKR 135 (221)
T ss_pred HHHHHHHH
Confidence 33333333
No 217
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=75.41 E-value=1.1e+02 Score=41.62 Aligned_cols=56 Identities=16% Similarity=0.247 Sum_probs=38.8
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045447 1406 KRLSDISQAEAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLK 1461 (2058)
Q Consensus 1406 ~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k 1461 (2058)
.++....++.-...+.++.+-.++.++|+.++.+...+.-+...++.|-.++++|.
T Consensus 202 ErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 202 ERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444444444555566666677777777777777778888888888888888887
No 218
>PRK10884 SH3 domain-containing protein; Provisional
Probab=75.12 E-value=29 Score=40.79 Aligned_cols=69 Identities=14% Similarity=0.170 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 26 AYIRYLQTDFETVKARADAAAITAEQTCSLLEQKFISLQEEFSKVESQNAQLQKSLDDRVNELAEVQSQ 94 (2058)
Q Consensus 26 ~~i~~l~~el~t~KA~~e~~~i~aEQ~~~~lEqk~~sl~~e~~~le~e~~eL~~~l~~~~~Ela~~q~~ 94 (2058)
.-+..++.++..++++.+...-+..+....+.+++.........|+.+|.+|+.++....+++..+..+
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~ 161 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQ 161 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666666666655555566666666666666666666777776666665444444333333
No 219
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=74.45 E-value=3.2e+02 Score=37.50 Aligned_cols=130 Identities=17% Similarity=0.235 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHH
Q 045447 725 REKLDSVMREAEHQKVEVNGVLARNVEFSQLVVDYQRKLRETSESLNAAQELSRKLAMEV-SVLKHEKEMLSNAEQRAYD 803 (2058)
Q Consensus 725 ~ER~e~Lq~n~e~~r~E~~sL~~rn~eLs~~~~k~e~~l~~~~e~L~aaeel~~~L~~E~-~nLKaEK~Llk~~E~RL~~ 803 (2058)
.+|..-+...|-....|.....-.|.+|...+...+..+.+.-+.+......+.-++-++ ..+++|+ +-.+|.-|.+
T Consensus 69 E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~rae~--lpeveael~q 146 (916)
T KOG0249|consen 69 EERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLRAET--LPEVEAELAQ 146 (916)
T ss_pred ccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHhhhh--hhhhHHHHHH
Confidence 334444444555555566666666666666666555554444333333333222221111 1233222 2234444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 045447 804 EVRSLSQRVYRLQASLDTIQNAEEVREEARAAERRKQEEYIKQVEREWAEAKKELQEERDNVRLLTSD 871 (2058)
Q Consensus 804 EnesL~~e~~rLqs~L~tiQs~~e~REeses~~Rrrle~~Ie~LE~Els~lKkrL~eE~e~~r~L~~~ 871 (2058)
.|..+..-. +-+-+ +++. -+++..+++++..+|..++.++.-..+....|...
T Consensus 147 r~~al~~ae----------e~~~~-~eer----~~kl~~~~qe~naeL~rarqreemneeh~~rlsdt 199 (916)
T KOG0249|consen 147 RNAALTKAE----------EHSGN-IEER----TRKLEEQLEELNAELQRARQREKMNEEHNKRLSDT 199 (916)
T ss_pred HHHHHHHHH----------Hhhcc-HHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc
Confidence 444333111 00111 2221 13445667777778887777777665555555443
No 220
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=74.21 E-value=33 Score=42.77 Aligned_cols=95 Identities=24% Similarity=0.297 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 045447 1347 IDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQK 1426 (2058)
Q Consensus 1347 iDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~ 1426 (2058)
..+.++..+..++..|+.+-.++.+++ ..|+.+...+..++..++.....+ +.+-...-
T Consensus 40 ~~~~~~~~~~~el~~le~Ee~~l~~eL--------------~~LE~e~~~l~~el~~le~e~~~l-------~~eE~~~~ 98 (314)
T PF04111_consen 40 DSEEDIEELEEELEKLEQEEEELLQEL--------------EELEKEREELDQELEELEEELEEL-------DEEEEEYW 98 (314)
T ss_dssp --HH--HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 346777777777777765444444333 233334444444444444444333 33333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 045447 1427 RISAQLRRKCEMLSKEKEESIKENQSLARQLDDLKQ 1462 (2058)
Q Consensus 1427 ~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k~ 1462 (2058)
.....++..+-.+.++...+..+......+++.|+.
T Consensus 99 ~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 99 REYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444445555567777777788888888888773
No 221
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=73.02 E-value=38 Score=45.00 Aligned_cols=76 Identities=24% Similarity=0.344 Sum_probs=52.3
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHH
Q 045447 1294 VAQKTKSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEI 1373 (2058)
Q Consensus 1294 ~lqk~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~ 1373 (2058)
.+.++...++.|+..+++|...++.++.+|.+|+.++++.+.+...=+ ++| -+++.+..+|..|+.+|.++...+
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~----~~~-rei~~~~~~I~~L~~~L~e~~~~v 497 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKV----RKD-REIRARDRRIERLEKELEEKKKRV 497 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445567778888888888888889999999999988888764211 111 256666677777776666665555
Q ss_pred H
Q 045447 1374 E 1374 (2058)
Q Consensus 1374 e 1374 (2058)
+
T Consensus 498 e 498 (652)
T COG2433 498 E 498 (652)
T ss_pred H
Confidence 4
No 222
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=72.09 E-value=2.1e+02 Score=33.86 Aligned_cols=148 Identities=13% Similarity=0.177 Sum_probs=79.4
Q ss_pred hHHHHHHHHhhhhhHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHHHHHHHH
Q 045447 1193 SLQSVISFLRNRKSIAETEVALLTT--EKLRLQKQLESALKAAENAQASLTTERANSRAMLLTEEEIKSLKLQVRELNLL 1270 (2058)
Q Consensus 1193 ~L~eVI~yLRREKEIae~qlel~~q--E~~RLqqQle~~qkqLdEar~~L~~Ere~s~t~~~s~e~hkeLmeKleqLNlL 1270 (2058)
-|...|+-++. +|..++-.+... ..+++..+++........-...-..-...++..+. ..-|.
T Consensus 28 ~l~q~irem~~--~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLA----r~Al~--------- 92 (219)
T TIGR02977 28 MIRLIIQEMED--TLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLA----RAALI--------- 92 (219)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH----HHHHH---------
Confidence 46666666666 788888887766 77788888877766666555444444444444433 22221
Q ss_pred HHhhHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhcCCCC
Q 045447 1271 RESNVQLREENKYNFEECQKLREVAQKTKSDCDNLENLLRERQIEIEACKKEMEKQRM--EKENLEKRVSELLQRCRNID 1348 (2058)
Q Consensus 1271 RESN~tLReE~~~~~~k~qkL~e~lqk~~~elepLe~~i~el~~elE~~~~Ei~~Lqe--E~~RWkqR~q~LLeKy~riD 1348 (2058)
+..........|...+..+...+..|+..|..++.++......-..|.. ...+=+.+++..+..++-.+
T Consensus 93 ---------~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~ 163 (219)
T TIGR02977 93 ---------EKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDE 163 (219)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh
Confidence 1111222233333333333344444555555555544444333333322 22344557777777654444
Q ss_pred H-HHHHHHHHHHHHHHH
Q 045447 1349 V-EDYDRLKVEVRQMEE 1364 (2058)
Q Consensus 1349 P-eE~e~Lk~Eie~Le~ 1364 (2058)
+ .-+++++..|..++.
T Consensus 164 a~~~fer~e~ki~~~ea 180 (219)
T TIGR02977 164 AMARFEQYERRVDELEA 180 (219)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 4 357888888877764
No 223
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=71.73 E-value=21 Score=42.62 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 045447 1537 SELEQHKQAVKRLSDELEKLKH 1558 (2058)
Q Consensus 1537 ~~~e~~~~~~~~l~~el~~~~~ 1558 (2058)
++.++....+.++-+||..|++
T Consensus 74 ~er~~~~~~i~r~~eey~~Lk~ 95 (230)
T PF10146_consen 74 SERNKRQEKIQRLYEEYKPLKD 95 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444455555444
No 224
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=71.66 E-value=25 Score=33.35 Aligned_cols=45 Identities=13% Similarity=0.328 Sum_probs=33.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 045447 1301 DCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCR 1345 (2058)
Q Consensus 1301 elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~ 1345 (2058)
.+..|.++|..|..++..+..++...++|..|-.+|...+...|.
T Consensus 11 dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~sY~ 55 (56)
T PF04728_consen 11 DVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQSYK 55 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcc
Confidence 344555666666666666667777888899999999999999995
No 225
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=71.57 E-value=2.2e+02 Score=33.77 Aligned_cols=90 Identities=13% Similarity=0.198 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhh
Q 045447 1318 ACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANS 1397 (2058)
Q Consensus 1318 ~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~ 1397 (2058)
.+..++..++.....|..|+..-|.+= +=|. -+..-.+....+..+..+...+......+......+..|+.++...
T Consensus 56 ~~e~~~~~~~~~~~~~~~~A~~Al~~G-~EdL--Ar~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~ 132 (219)
T TIGR02977 56 ELERRVSRLEAQVADWQEKAELALSKG-REDL--ARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEA 132 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777778889999999999843 3222 2222223333333333444444444444445555555555555555
Q ss_pred HHHHHHHHHHhhh
Q 045447 1398 RLELSEKEKRLSD 1410 (2058)
Q Consensus 1398 ~~e~~~le~k~~d 1410 (2058)
+..+..|-.+.+.
T Consensus 133 k~k~~~l~ar~~~ 145 (219)
T TIGR02977 133 RARQKALAIRHQA 145 (219)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555444433
No 226
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=71.06 E-value=1.4e+02 Score=36.12 Aligned_cols=60 Identities=22% Similarity=0.248 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1386 TISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQKRISAQLRRKCEMLSKEKEE 1445 (2058)
Q Consensus 1386 ~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e 1445 (2058)
.++.|+..-.....++..|+.++.++......|..+++.-...+..|+.++.........
T Consensus 62 ~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ 121 (246)
T PF00769_consen 62 EKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEE 121 (246)
T ss_dssp HHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555566677778888898888888889999999999999999877766554333
No 227
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=70.64 E-value=3.7e+02 Score=35.93 Aligned_cols=33 Identities=24% Similarity=0.462 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 045447 836 ERRKQEEYIKQVEREWAEAKKELQEERDNVRLL 868 (2058)
Q Consensus 836 ~Rrrle~~Ie~LE~Els~lKkrL~eE~e~~r~L 868 (2058)
.|+.++.||..|..-++.+..+|....|++..|
T Consensus 481 Tr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 481 TRRNYEEQLSMMSEHLASMNEQLAKQREEIQTL 513 (518)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888888888888887777655
No 228
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.49 E-value=3.9e+02 Score=35.36 Aligned_cols=110 Identities=18% Similarity=0.155 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHcccchHHH--HHH----------H-----HH------HHHHH
Q 045447 414 LAKIYAKYQEAVDALRHEQLGRKESEAVLQRVLYELEEKAGIILDE--RAE----------Y-----ER------MVDAY 470 (2058)
Q Consensus 414 LTqlYt~Yve~k~qL~~Er~en~rLq~~Ld~Iv~ELEeKAP~L~eq--R~E----------y-----Er------l~~~~ 470 (2058)
-..|.+.++.++..++.--..-+-|+..+-..|.||..|.-+|+.. |++ . .| +.-.+
T Consensus 476 ka~lierivrLQ~a~arknekiefLe~h~~qlveevQKktKiiQhy~lrEes~~lttegsd~nks~L~r~simaal~G~~ 555 (613)
T KOG0992|consen 476 KADLIERIVRLQLAIARKNEKIEFLEQHLIQLVEEVQKKTKIIQHYTLREESGPLTTEGSDINKSSLERFSIMAALYGNC 555 (613)
T ss_pred hHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchHHHHHHHHHHhcCC
Confidence 4556899999998887766667788899999999999999999854 444 0 00 00111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 045447 471 SAINQKLQNFISEKSSLEKTIQELKADLRMRERDYYLAQKEISDLQKQVTVLLKECRDI 529 (2058)
Q Consensus 471 ~~Ls~~Leqa~~Erd~leke~r~a~~~l~~~eREn~~Lk~Ql~DLsrQV~vLL~Ev~~~ 529 (2058)
..|+..-=+++.|+ ..++..-+.+.-+-|-.|+--+.-|+.-+--|+...+..
T Consensus 556 ~~~~g~~lql~~eV------n~KlqAvlEdtl~knItlksnLdtL~tE~erL~r~~r~l 608 (613)
T KOG0992|consen 556 VIMDGVNLQLSLEV------NVKLQAVLEDTLLKNITLKSNLDTLGTEEERLLRDTRNL 608 (613)
T ss_pred cccCcchHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 11111111122222 344555556666777788888888888888888876653
No 229
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=68.12 E-value=3.9e+02 Score=38.20 Aligned_cols=52 Identities=17% Similarity=0.353 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Q 045447 1308 LLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKL 1366 (2058)
Q Consensus 1308 ~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L 1366 (2058)
.++..-+-+..+.+|+++|+-|+.|.- ..-+.||-.+.++|.+.+..+..+|
T Consensus 1125 ~ikK~ia~lnnlqqElklLRnEK~Rmh-------~~~dkVDFSDIEkLE~qLq~~~~kL 1176 (1439)
T PF12252_consen 1125 SIKKAIANLNNLQQELKLLRNEKIRMH-------SGTDKVDFSDIEKLEKQLQVIHTKL 1176 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhc-------cCCCcccHHHHHHHHHHHHHhhhhh
Confidence 445555667788889999988887753 3456799999999999999888755
No 230
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=68.04 E-value=4.7e+02 Score=36.22 Aligned_cols=47 Identities=28% Similarity=0.241 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhhhhhcCCCCCcceeeccCccc----hhhhhhHHHHHHHHH
Q 045447 1546 VKRLSDELEKLKHTEAGLPEGTSVVQLLSGTN----LDDHASSYFSAVESF 1592 (2058)
Q Consensus 1546 ~~~l~~el~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 1592 (2058)
+.+|..|.+||.+.|..-|+|.-|.|.+-.|. .|--+.-||.-.+.|
T Consensus 1094 lenLrnEieklndkIkdnne~~QVglae~nslmTiekDmcaselfneheee 1144 (1424)
T KOG4572|consen 1094 LENLRNEIEKLNDKIKDNNEGDQVGLAEENSLMTIEKDMCASELFNEHEEE 1144 (1424)
T ss_pred HHHHHHHHHHHHHHhhcCCCcchHHHHHhccCCccchhHHHHHHHHHhhhh
Confidence 67788888888888889999987777665543 344455688766554
No 231
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=67.85 E-value=57 Score=32.42 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=19.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1401 LSEKEKRLSDISQAEAARKLEMEKQKRISAQLR 1433 (2058)
Q Consensus 1401 ~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k 1433 (2058)
++.|+.||+.+...++.|+-+++.++.....++
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 345666666666666666655555555544444
No 232
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=67.54 E-value=1.1e+02 Score=35.57 Aligned_cols=98 Identities=20% Similarity=0.292 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhhHHHH---HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 412 WSLAKIYAKYQEAVDALRHEQLGRKESEA---VLQRVLYELEEKAGIILDERAEYERMVDAYSAINQKLQNFISEKSSLE 488 (2058)
Q Consensus 412 ~SLTqlYt~Yve~k~qL~~Er~en~rLq~---~Ld~Iv~ELEeKAP~L~eqR~EyErl~~~~~~Ls~~Leqa~~Erd~le 488 (2058)
-..--+|..|+.-...|..---++-+|+. +++.+|.+=++++- .++.+...+...-..+. ......+
T Consensus 84 ~~AE~~Y~~F~~Qt~~LA~~eirR~~LeAQka~~eR~ia~~~~ra~---~LqaDl~~~~~Q~~~va-------~~Q~q~r 153 (192)
T PF11180_consen 84 ARAEAIYRDFAQQTARLADVEIRRAQLEAQKAQLERLIAESEARAN---RLQADLQIARQQQQQVA-------ARQQQAR 153 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 34456799999999999887777777774 77888887777743 33444444444333332 2223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 045447 489 KTIQELKADLRMRERDYYLAQKEISDLQKQVTVLLKEC 526 (2058)
Q Consensus 489 ke~r~a~~~l~~~eREn~~Lk~Ql~DLsrQV~vLL~Ev 526 (2058)
.....++-+..-++.||++|.+||+-|=...
T Consensus 154 -------~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 154 -------QEAQALEAERRAAQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2333444667777788888888888885543
No 233
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=66.98 E-value=5e+02 Score=36.14 Aligned_cols=56 Identities=21% Similarity=0.398 Sum_probs=32.6
Q ss_pred HHHHHhHHHHHhhhHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHhhhhhh-hhHHHHHHHHHHH
Q 045447 190 ERHNAWLNEELTSKVNSLVELRRTHADLEADMSAKLSDVERQFSECSSSLN-WNKERVRELEIKL 253 (2058)
Q Consensus 190 qknneWLe~ELk~KteEll~~Rre~~~~e~~l~aki~eLqre~~E~~ssL~-~sk~rv~eLe~Kl 253 (2058)
+..++-|+.|.+.+.++.... .++..++..|+.++..+..+=. .++.+++.|++++
T Consensus 648 k~KIe~L~~eIkkkIe~av~s--------s~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~qi 704 (762)
T PLN03229 648 QEKIESLNEEINKKIERVIRS--------SDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQI 704 (762)
T ss_pred HHHHHHHHHHHHHHHHHHhcc--------hhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHH
Confidence 445666677777777666651 1367777788777754443211 1256677776543
No 234
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=66.98 E-value=1.6e+02 Score=33.82 Aligned_cols=10 Identities=40% Similarity=0.594 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 045447 111 RLTMEVAELH 120 (2058)
Q Consensus 111 rLr~ei~eLe 120 (2058)
.+..++..+.
T Consensus 141 ~~~~e~~~l~ 150 (191)
T PF04156_consen 141 ELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 235
>PRK11519 tyrosine kinase; Provisional
Probab=66.61 E-value=2.2e+02 Score=39.65 Aligned_cols=69 Identities=12% Similarity=0.110 Sum_probs=28.5
Q ss_pred hhcCCCCH-HHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhh
Q 045447 1342 QRCRNIDV-EDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSD 1410 (2058)
Q Consensus 1342 eKy~riDP-eE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d 1410 (2058)
.+++-+|+ .+.+.+-+.+..++.++.........+....+...-.+..+...+.....+++.++.++..
T Consensus 295 ~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~ 364 (719)
T PRK11519 295 QDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHPAYRTLLEKRKALEDEKAKLNGRVTA 364 (719)
T ss_pred HHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444453 2333333344444443333333332223333333344455554444444444444444433
No 236
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=66.53 E-value=2.6e+02 Score=32.56 Aligned_cols=39 Identities=33% Similarity=0.349 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045447 1133 EKSVLEKLKNEAEEKYDEVNEQNKILHSRLEALHIQLTE 1171 (2058)
Q Consensus 1133 qk~~Le~Ei~el~~R~eDL~~QN~LLH~QLE~lt~Qia~ 1171 (2058)
.+..+..+..+-.....++..||+-|-.||.+.-++...
T Consensus 37 yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCsl 75 (178)
T PF14073_consen 37 YKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSL 75 (178)
T ss_pred hHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHH
Confidence 444555555555566666666666666666666555543
No 237
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=66.47 E-value=3.7e+02 Score=34.33 Aligned_cols=38 Identities=29% Similarity=0.415 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045447 1129 KWELEKSVLEKLKNEAEEKYDEVNEQNKILHSRLEALHIQLT 1170 (2058)
Q Consensus 1129 SWeeqk~~Le~Ei~el~~R~eDL~~QN~LLH~QLE~lt~Qia 1170 (2058)
..+.++..|. ..++--.+|+..|.=||+.|-.--+++-
T Consensus 450 alEaerqaLR----qCQrEnQELnaHNQELnnRLaaEItrLR 487 (593)
T KOG4807|consen 450 ALEAERQALR----QCQRENQELNAHNQELNNRLAAEITRLR 487 (593)
T ss_pred HHHHHHHHHH----HHHHhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 3344444443 4777888999999999999877655553
No 238
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=66.45 E-value=41 Score=33.84 Aligned_cols=59 Identities=19% Similarity=0.283 Sum_probs=39.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1401 LSEKEKRLSDISQAEAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDD 1459 (2058)
Q Consensus 1401 ~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~ 1459 (2058)
++.|+.||+.+...+.-|+-|++-++.....+..+...+.-...+|..+++.|+.+...
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~ 64 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNG 64 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34677777777777777777777777777777766666666666666666666655443
No 239
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=66.06 E-value=1.9e+02 Score=35.96 Aligned_cols=154 Identities=18% Similarity=0.295 Sum_probs=86.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 045447 1302 CDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLS 1381 (2058)
Q Consensus 1302 lepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~ 1381 (2058)
++.|+++-.+|.-+++.|++|+. ||+|.+|--..|+++|-+.|.+|++.+=.- .
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENk---------------iLdK~hRQKV~EVEKLsqTi~ELEEaiLag-----------G 55 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENK---------------ILDKMHRQKVLEVEKLSQTIRELEEAILAG-----------G 55 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------c
Confidence 45677777888888999998887 688888888999999999999998522111 1
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Q 045447 1382 TKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQKRISAQLRRKCEMLS------KEKEESIKENQSLAR 1455 (2058)
Q Consensus 1382 ~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~~------~e~~e~~~e~~~l~~ 1455 (2058)
..-+.+..++-+..+...++..|+..+.-+..-.|- ...-.+..||...+... .|..-+..|.|.|.-
T Consensus 56 aaaNavrdYqrq~~elneEkrtLeRELARaKV~aNR------VA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrD 129 (351)
T PF07058_consen 56 AAANAVRDYQRQVQELNEEKRTLERELARAKVSANR------VATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRD 129 (351)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHH
Confidence 222334444444444444444444333222110000 11123445665433331 333445555555554
Q ss_pred HHHHHhcccccCCCcchhHHHHhhhhhhhHHHHHHHHHHH
Q 045447 1456 QLDDLKQGKKSTGDVTGEQVMKEKEEKDTRIQILERTVER 1495 (2058)
Q Consensus 1456 q~~~~k~~~~~~~~~~~~q~~ke~~~~~~~~~~~~~~~e~ 1495 (2058)
.|.-.--.. ..|--+|++. .-|+++|+.-|--
T Consensus 130 KLAiaERtA------kaEaQLkeK~--klRLK~LEe~Lk~ 161 (351)
T PF07058_consen 130 KLAIAERTA------KAEAQLKEKL--KLRLKVLEEGLKG 161 (351)
T ss_pred HHHHHHHHH------HHHHHHHHHH--HHHHHHHHhhccC
Confidence 443332222 3344477655 5688888877755
No 240
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=65.82 E-value=3.1e+02 Score=33.29 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=21.6
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHHHh
Q 045447 1337 VSELLQRCRNIDVEDYDRLKVEVRQMEEKLS 1367 (2058)
Q Consensus 1337 ~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~ 1367 (2058)
++.+=.+|.|.-..++..||..-..|+..+.
T Consensus 95 v~a~e~~~~rll~d~i~nLk~se~~lkqQ~~ 125 (330)
T KOG2991|consen 95 VQALEGKYTRLLSDDITNLKESEEKLKQQQQ 125 (330)
T ss_pred HHHhcCcccchhHHHHHhhHHHHHHHHHHHH
Confidence 4455568888877888888877777766443
No 241
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=65.77 E-value=1.3e+02 Score=33.24 Aligned_cols=37 Identities=30% Similarity=0.471 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHH
Q 045447 90 EVQSQKHQLHLQLIGKDGEIERLTMEVAELHKSRRQL 126 (2058)
Q Consensus 90 ~~q~~~~~L~~~~~~~dseverLr~ei~eLe~ekr~l 126 (2058)
.-..-...|+.++..+|++|.+||..+.++...|+.|
T Consensus 91 ~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~L 127 (131)
T PF04859_consen 91 TYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSL 127 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334456677777788888888888888877766654
No 242
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=65.74 E-value=71 Score=36.18 Aligned_cols=68 Identities=28% Similarity=0.356 Sum_probs=47.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 045447 1400 ELSEKEKRLSDISQAEAARKLEMEKQKRISAQLRRK--CEMLSKEKEESIKENQSLARQLDDLKQGKKST 1467 (2058)
Q Consensus 1400 e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~--~e~~~~e~~e~~~e~~~l~~q~~~~k~~~~~~ 1467 (2058)
++..+...|.++..+...++.++..+...++.+... .+.+......+.+++..|...+..|+++....
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~v 142 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPV 142 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 344555566666666666666666666666666642 24466888899999999999999999866543
No 243
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=65.72 E-value=3.9e+02 Score=34.41 Aligned_cols=51 Identities=25% Similarity=0.293 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHH----------------HHHHHHHhHHHHHHHHHHH-HhHHHHHhhhHHHH
Q 045447 157 NAAQREARLAETEAELAR----------------AQATCTRLTQGKELIERHN-AWLNEELTSKVNSL 207 (2058)
Q Consensus 157 ~~~~~e~rl~e~es~~~s----------------~k~~e~RLeQE~eLLqknn-eWLe~ELk~KteEl 207 (2058)
..+.++.||..++..+-. .--....|.+.+.+|.... +-++..|+.-..++
T Consensus 210 ~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~ 277 (388)
T PF04912_consen 210 RAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSEL 277 (388)
T ss_pred HHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 445566666666655322 2234577888888885432 44555554333333
No 244
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.56 E-value=2.1e+02 Score=37.64 Aligned_cols=116 Identities=22% Similarity=0.318 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhH---HHHHhhhHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHhhhh
Q 045447 162 EARLAETEAELARAQATCTRLTQGKELIERHNAWL---NEELTSKVNSLVELRRTHADLEADMSAKLSDVERQFSECSSS 238 (2058)
Q Consensus 162 e~rl~e~es~~~s~k~~e~RLeQE~eLLqknneWL---e~ELk~KteEll~~Rre~~~~e~~l~aki~eLqre~~E~~ss 238 (2058)
-.||.++........+|+=|+==..+.+++---=| +++|..|-+.++.--... .++..||..|.......++.
T Consensus 375 ~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kldtll~~ln~P----nq~k~Rl~~L~e~~r~q~~~ 450 (508)
T KOG3091|consen 375 VAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEELRAKLDTLLAQLNAP----NQLKARLDELYEILRMQNSQ 450 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHHHHHHHHHHHHhcCh----HHHHHHHHHHHHHHHhhcch
Confidence 35566666666666677766544444444433222 566666655555433333 12444444443322211111
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 045447 239 LNWNKERVRELEIKLSSLQEEFCSSKDAAAANEERFSTELSTVNKLVELYKESSEEWS 296 (2058)
Q Consensus 239 L~~sk~rv~eLe~Kl~~lqe~L~~~ke~~a~~ee~fr~EL~aq~RLaeLyke~aee~~ 296 (2058)
+. +.....--.+....|.+++..|.+...+|++..+..-++..
T Consensus 451 ~~---------------~~~~~~iD~~~~~e~~e~lt~~~e~l~~Lv~Ilk~d~edi~ 493 (508)
T KOG3091|consen 451 LK---------------LQESYWIDFDKLIEMKEHLTQEQEALTKLVNILKGDQEDIK 493 (508)
T ss_pred hc---------------cccceeechhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 10 01111112245556778999999999999999977766654
No 245
>PF14992 TMCO5: TMCO5 family
Probab=65.52 E-value=3.3e+02 Score=33.72 Aligned_cols=115 Identities=15% Similarity=0.250 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 045447 841 EEYIKQVEREWAEAKKELQEERDNVRLLTSDREQTLKNAVKQVEEMGKELATALRAVASAETRAAVAETKLSDMEKRIRP 920 (2058)
Q Consensus 841 e~~Ie~LE~Els~lKkrL~eE~e~~r~L~~~re~~~~e~qkrid~l~~El~~~~eal~~aetr~~vle~rv~~Le~kL~~ 920 (2058)
+..|.+|++|++..-..+.+. |....++..++.++++.....+.|. ....++-.-|.+|++++..
T Consensus 31 E~~iq~Le~Eit~~~~~~~~~-e~e~~~~~~~e~~l~~le~e~~~LE--------------~~ne~l~~~~~elq~k~~e 95 (280)
T PF14992_consen 31 EGAIQSLEREITKMDHIADRS-EEEDIISEERETDLQELELETAKLE--------------KENEHLSKSVQELQRKQDE 95 (280)
T ss_pred HHHHHHHHHHHHHHccccCch-hHHhhhhhchHHHHHHHHhhhHHHh--------------hhhHhhhhhhhhhhhhhcc
Confidence 345778899998887777655 4455666777766655554444442 2223344445677777665
Q ss_pred ccCCccccCCC--CCCc--hhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 921 LDAKGDEVDDG--SRPS--DEVQLQVGKEELEKLKEEAQANREHMLQYKSIAQVNEAA 974 (2058)
Q Consensus 921 ~~~k~~s~~~~--~~~s--~E~eL~~lk~ELe~lkeeL~~Ak~qveQYK~IAqsaEea 974 (2058)
....+. .+.. .+.. .+..++.+.........++..... .|..+++.-+.+
T Consensus 96 ~~~~~~-~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~---d~~~v~~l~eDq 149 (280)
T PF14992_consen 96 QETNVQ-CEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVED---DYQQVHQLCEDQ 149 (280)
T ss_pred ccCCCC-CCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 543321 1110 1111 336777777777777777766544 455555444443
No 246
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=64.41 E-value=4.3e+02 Score=34.41 Aligned_cols=18 Identities=17% Similarity=0.100 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 045447 1541 QHKQAVKRLSDELEKLKH 1558 (2058)
Q Consensus 1541 ~~~~~~~~l~~el~~~~~ 1558 (2058)
.|...+..+.=++..|+-
T Consensus 411 e~~~~i~aI~l~~~llk~ 428 (446)
T KOG4438|consen 411 ELESQIVAITLECILLKM 428 (446)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445556556666655
No 247
>PRK10698 phage shock protein PspA; Provisional
Probab=63.40 E-value=3.2e+02 Score=32.65 Aligned_cols=93 Identities=13% Similarity=0.199 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHH
Q 045447 1316 IEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELA 1395 (2058)
Q Consensus 1316 lE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~ 1395 (2058)
--.+..++..++.....|..|+..-|++= +=|.+ +..-.+-......+..+..+++.....+......+..|+.++.
T Consensus 54 ~k~~er~~~~~~~~~~~~e~kA~~Al~~G-~EdLA--r~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~ 130 (222)
T PRK10698 54 KKQLTRRIEQAEAQQVEWQEKAELALRKE-KEDLA--RAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLS 130 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33346667777788889999999999853 43322 2211112222223333334444444555555566666777777
Q ss_pred hhHHHHHHHHHHhhhH
Q 045447 1396 NSRLELSEKEKRLSDI 1411 (2058)
Q Consensus 1396 ~~~~e~~~le~k~~d~ 1411 (2058)
+.+..+..|-.|.+.+
T Consensus 131 eak~k~~~L~aR~~~A 146 (222)
T PRK10698 131 ETRARQQALMLRHQAA 146 (222)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7666666665555544
No 248
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=62.76 E-value=28 Score=45.18 Aligned_cols=41 Identities=24% Similarity=0.239 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045447 1302 CDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQ 1342 (2058)
Q Consensus 1302 lepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLe 1342 (2058)
+..|-..++++..++..+..+++.|++|.+||++|-+.|=.
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~ 101 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQ 101 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 44566677888888888999999999999999998665543
No 249
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=62.67 E-value=59 Score=34.38 Aligned_cols=67 Identities=31% Similarity=0.375 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 045447 63 LQEEFSKVESQNAQLQKSLDDRVNELAEVQSQKHQLHLQLIGKDGEIERLTMEVAELHKSRRQLMELVEQKDLQ 136 (2058)
Q Consensus 63 l~~e~~~le~e~~eL~~~l~~~~~Ela~~q~~~~~L~~~~~~~dseverLr~ei~eLe~ekr~ll~llErk~~e 136 (2058)
|..+|+++..++..|+..+- .-|+....|+..+..++..+.++-.++++|.--|.+|..-|+.-..+
T Consensus 3 la~eYsKLraQ~~vLKKaVi-------eEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~E 69 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVI-------EEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEE 69 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999988763 23444556677777888899999999999999888887655444333
No 250
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=62.44 E-value=3e+02 Score=32.02 Aligned_cols=89 Identities=12% Similarity=0.188 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHH
Q 045447 958 REHMLQYKSIAQVNEAALKEMETVHENFRTRVEGVKKSLEDELHSLRKRVSELERENILKSEEIASAAGVREDALASARE 1037 (2058)
Q Consensus 958 k~qveQYK~IAqsaEeaL~~l~~~~e~yK~e~E~~l~e~e~ei~~L~~ri~eLe~El~~~~eE~~~~~~~~e~ql~~l~~ 1037 (2058)
+.|.+|-+.--++.-..|..++..++.++.+++..-.....+-..+..-+..=..-+..++.++....+.+.+-.+....
T Consensus 87 ReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr~~Ter 166 (182)
T PF15035_consen 87 REQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEHSRLLSLWREVVALRRQFAELRTATER 166 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444446677788888888877776655444444444443333333333334444444444444444444444
Q ss_pred HHHHHHHHH
Q 045447 1038 EITSLKEER 1046 (2058)
Q Consensus 1038 El~~Lk~E~ 1046 (2058)
+|+.++.|+
T Consensus 167 dL~~~r~e~ 175 (182)
T PF15035_consen 167 DLSDMRAEF 175 (182)
T ss_pred hHHHHHHHH
Confidence 455555544
No 251
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=62.34 E-value=34 Score=47.68 Aligned_cols=16 Identities=19% Similarity=0.258 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 045447 1147 KYDEVNEQNKILHSRL 1162 (2058)
Q Consensus 1147 R~eDL~~QN~LLH~QL 1162 (2058)
.|+-|-+=|.++...|
T Consensus 1305 kCKaLIAGnel~Re~L 1320 (3015)
T KOG0943|consen 1305 KCKALIAGNELAREDL 1320 (3015)
T ss_pred cchhhhcchHHHHHHH
Confidence 4666666666666554
No 252
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=62.03 E-value=4.1e+02 Score=33.34 Aligned_cols=67 Identities=18% Similarity=0.318 Sum_probs=42.4
Q ss_pred HhhHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 045447 1272 ESNVQLREENKYNFEECQKLREVAQKTKSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRC 1344 (2058)
Q Consensus 1272 ESN~tLReE~~~~~~k~qkL~e~lqk~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy 1344 (2058)
=-|.++|+|+= .++..+...-..-+..++..+...+..+..-..++..|++++..+.+..-.|-++|
T Consensus 87 r~nk~~keE~~------~q~k~eEerRkea~~~fqvtL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy 153 (391)
T KOG1850|consen 87 RANKQTKEEAC------AQMKKEEERRKEAVEQFQVTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQY 153 (391)
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 36888999863 22222222222335567777777777777777777777877776666666666666
No 253
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=60.91 E-value=8.5e+02 Score=36.69 Aligned_cols=51 Identities=14% Similarity=0.208 Sum_probs=29.7
Q ss_pred hHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1193 SLQSVISFLRNRKSIAETEVALLTTEKLRLQKQLESALKAAENAQASLTTERA 1245 (2058)
Q Consensus 1193 ~L~eVI~yLRREKEIae~qlel~~qE~~RLqqQle~~qkqLdEar~~L~~Ere 1245 (2058)
.+..+|.-||+.+..++.- +-...+..++..+++...+.+.+.... ..++.
T Consensus 436 ~~~~~i~~L~~~~~~~e~a-~~~~~~~~~~~~el~~~~~~~~e~~~~-~~~~~ 486 (1353)
T TIGR02680 436 QRSEQVALLRRRDDVADRA-EATHAAARARRDELDEEAEQAAARAEL-ADEAV 486 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3566666777766554433 334555666666666666666666665 44333
No 254
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=60.90 E-value=1.3e+02 Score=32.14 Aligned_cols=46 Identities=17% Similarity=0.167 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 045447 1419 KLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLKQGK 1464 (2058)
Q Consensus 1419 ~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k~~~ 1464 (2058)
.++.+.++..+..++.+...+.+-+.+|..++..+-+.++.-|..+
T Consensus 36 ~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak 81 (107)
T PF09304_consen 36 AKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAK 81 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555554455555555555555555555555555444
No 255
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=60.30 E-value=3.4e+02 Score=31.94 Aligned_cols=153 Identities=21% Similarity=0.194 Sum_probs=72.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 989 VEGVKKSLEDELHSLRKRVSELERENILKSEEIAS---AAGVREDALASAREEITSLKEERSIKISQIVNLEVQVSALKE 1065 (2058)
Q Consensus 989 ~E~~l~e~e~ei~~L~~ri~eLe~El~~~~eE~~~---~~~~~e~ql~~l~~El~~Lk~E~~~~~~~~~~~E~q~~~l~~ 1065 (2058)
.+..++.+++...++..++..++..+....--... ........|.....+|.+.-.-..-....+..++-++..+.+
T Consensus 44 ~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~ 123 (205)
T KOG1003|consen 44 SERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDS 123 (205)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 34455666666677777777666665433211111 111222234444444443333222223333333344444444
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 045447 1066 DLEKEHERRQAAQANYERQVILQSETIQELTKTSQALASLQEQASELRKLADALKAENSELKSKWELEKSVLEKLKNEAE 1145 (2058)
Q Consensus 1066 DL~~Q~~~a~eAQ~nYErElvLHAe~IqeL~k~~e~~~~lq~e~~elr~~aesak~~L~e~e~SWeeqk~~Le~Ei~el~ 1145 (2058)
+|.. .....++|. +.+-.....++.+-..+-+.-+.|+ ..+-.-..|++++.+++
T Consensus 124 nlk~----l~~~ee~~~----------q~~d~~e~~ik~ltdKLkEaE~rAE-----------~aERsVakLeke~DdlE 178 (205)
T KOG1003|consen 124 NLKS----LSAKEEKLE----------QKEEKYEEELKELTDKLKEAETRAE-----------FAERRVAKLEKERDDLE 178 (205)
T ss_pred HHHH----HHHHHHHHh----------hhHHHHHHHHHHHHHHHhhhhhhHH-----------HHHHHHHHHcccHHHHH
Confidence 4433 233344444 2333333333333333333222222 12233356777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 045447 1146 EKYDEVNEQNKILHSRLEALH 1166 (2058)
Q Consensus 1146 ~R~eDL~~QN~LLH~QLE~lt 1166 (2058)
..+.....=+.=+|.-|+.+.
T Consensus 179 ~kl~~~k~ky~~~~~eLD~~~ 199 (205)
T KOG1003|consen 179 EKLEEAKEKYEEAKKELDETL 199 (205)
T ss_pred HhhHHHHHHHHHHHHHHHHHH
Confidence 777777777777777776654
No 256
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=60.25 E-value=3.1e+02 Score=31.39 Aligned_cols=68 Identities=24% Similarity=0.280 Sum_probs=45.5
Q ss_pred HhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 673 LLLEGSQEATKRAQEKMAERVRCLEDDLGKARSEIIALRSERDKLALEAEFAREKLDSVMREAEHQKV 740 (2058)
Q Consensus 673 ~~lE~sq~~~~~a~~q~~e~~k~L~eql~k~r~El~~LrsE~~K~s~q~e~a~ER~e~Lq~n~e~~r~ 740 (2058)
..++.+....+...+..-.-...+..+|..++.++...-.+.+++...-.+|+-|+--.-.+|..|..
T Consensus 9 ~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE 76 (159)
T PF05384_consen 9 DTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSE 76 (159)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCH
Confidence 34555554444444444444566777888888888777777888777777788888777777766653
No 257
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=60.18 E-value=4.4e+02 Score=33.12 Aligned_cols=27 Identities=33% Similarity=0.305 Sum_probs=15.2
Q ss_pred CCCCCCCCccccCCCCCCCCCCCCCCCC
Q 045447 1742 EPSSDVPAPVLKKSKLPDSSSEDAGGQS 1769 (2058)
Q Consensus 1742 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1769 (2058)
-+++-...||+|||-- +|+-....-|+
T Consensus 431 lt~~pcSSPV~~k~ll-GssaSSp~~qs 457 (561)
T KOG1103|consen 431 LTPRPCSSPVKKKPLL-GSSASSPAVQS 457 (561)
T ss_pred CCCCCCCCcccccccc-ccccCChhhhh
Confidence 3445555687888876 44444444443
No 258
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=60.17 E-value=5.2e+02 Score=33.95 Aligned_cols=168 Identities=23% Similarity=0.255 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH----------HHHHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Q 045447 1032 LASAREEITSLKEERSIKISQIVNLEV----------QV----------SALKEDLEKEHERRQAAQANYERQVILQSET 1091 (2058)
Q Consensus 1032 l~~l~~El~~Lk~E~~~~~~~~~~~E~----------q~----------~~l~~DL~~Q~~~a~eAQ~nYErElvLHAe~ 1091 (2058)
...+..||..|+..+..+......... ++ .....+|+.....|.+|..++=
T Consensus 224 kE~Ll~EIq~Lk~qL~~~~~ss~s~~~~~~sll~~s~~~~~~~~~~~~~~~~~~~le~er~~wtE~ES~WI--------- 294 (488)
T PF06548_consen 224 KEVLLEEIQDLKSQLQYYTDSSMSTDRLRSSLLQRSYQLRPSAIPESGDENAEEELEQERQRWTEAESKWI--------- 294 (488)
T ss_pred HHHHHHHHHHHHHHHHhccccccccccccccHHhhhhccCCCCCcccCCCchhhhHHHHHHHHHHHHhhhh---------
Confidence 455778888888877743321110000 00 1123567777888888888876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Q 045447 1092 IQELTKTSQALASLQEQASELRKLADALKAENSELKSKWELEKSVLEKL----------KNEAEEKYDEVNEQNKILHSR 1161 (2058)
Q Consensus 1092 IqeL~k~~e~~~~lq~e~~elr~~aesak~~L~e~e~SWeeqk~~Le~E----------i~el~~R~eDL~~QN~LLH~Q 1161 (2058)
-|+. .|+.++...|..++-.+.+|..-+.+-++-...|..- -.+++.++.+|-.=-+-..+=
T Consensus 295 --sLte------eLR~dle~~r~~aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~~Ll~~Hr~i~eg 366 (488)
T PF06548_consen 295 --SLTE------ELRVDLESSRSLAEKLEMELDSEKKCTEELDDALQRAMEGHARMLEQYADLQEKHNDLLARHRRIMEG 366 (488)
T ss_pred --hhHH------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2443 6777888888888888888888888888777766544 445555555555544444445
Q ss_pred HHHHHHHHhhhccccccccCCCCCCCCCCchhHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHH
Q 045447 1162 LEALHIQLTEKDGSSVRISSQSTDSNPIGDASLQSVISFLRNRKSIAETEVALLTTEKLRLQKQLES 1228 (2058)
Q Consensus 1162 LE~lt~Qia~~~~~~a~~ss~s~~~~s~~~e~L~eVI~yLRREKEIae~qlel~~qE~~RLqqQle~ 1228 (2058)
|+.+..-.+. ||. -+.++.=...|-.=|+-||-|+|- .-..++-||+.|+.||-.
T Consensus 367 I~dVKkaAak-----Ag~----kG~~~rF~~slaaEiSalr~erEk---Er~~l~~eNk~L~~QLrD 421 (488)
T PF06548_consen 367 IEDVKKAAAK-----AGV----KGAESRFINSLAAEISALRAEREK---ERRFLKDENKGLQIQLRD 421 (488)
T ss_pred HHHHHHHHHH-----hcc----ccchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHh
Confidence 5555532211 111 001111113455667777754432 246788899999999843
No 259
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=59.41 E-value=66 Score=37.40 Aligned_cols=40 Identities=30% Similarity=0.492 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 045447 1321 KEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEE 1364 (2058)
Q Consensus 1321 ~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~ 1364 (2058)
.++..|+.+....+.- |.+|...||+-++.++.++..+..
T Consensus 110 ~~l~~l~~~~~~l~~e----l~~~~~~Dp~~i~~~~~~~~~~~~ 149 (188)
T PF03962_consen 110 EELEELKKELKELKKE----LEKYSENDPEKIEKLKEEIKIAKE 149 (188)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHhcCHHHHHHHHHHHHHHHH
Confidence 3444445544444443 458889999999999999887753
No 260
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=58.94 E-value=3.6e+02 Score=34.21 Aligned_cols=65 Identities=12% Similarity=0.172 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 045447 463 YERMVDAYSAINQKLQNFISEKSSLEKTIQELKADLRMRERDYYLAQKEISDLQKQVTVLLKECR 527 (2058)
Q Consensus 463 yErl~~~~~~Ls~~Leqa~~Erd~leke~r~a~~~l~~~eREn~~Lk~Ql~DLsrQV~vLL~Ev~ 527 (2058)
...+...+.....+.+.+..+....+..+..+..-+..+..|..+...++.+|..+...|+-.|-
T Consensus 251 l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~GD~l 315 (344)
T PF12777_consen 251 LAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLVGDSL 315 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccHHHHH
Confidence 33333333333333333344444444455555566667788889999999999999999877653
No 261
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=58.42 E-value=9.3e+02 Score=36.33 Aligned_cols=226 Identities=14% Similarity=0.151 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCCCCCchhHHHHHHHHhhhhhHHHHHHhhHH
Q 045447 1137 LEKLKNEAEEKYDEVNEQNKILHSRLEALHIQLTEKDGSSVRISSQSTDSNPIGDASLQSVISFLRNRKSIAETEVALLT 1216 (2058)
Q Consensus 1137 Le~Ei~el~~R~eDL~~QN~LLH~QLE~lt~Qia~~~~~~a~~ss~s~~~~s~~~e~L~eVI~yLRREKEIae~qlel~~ 1216 (2058)
=...|.++..+|..|..+-.-|-.+|..+..++..+.......+ +..+|+.-...|++ +...+....
T Consensus 740 R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~P---------s~~dL~~A~~~l~~----A~~~~~~a~ 806 (1353)
T TIGR02680 740 RLRRIAELDARLAAVDDELAELARELRALGARQRALADELAGAP---------SDRSLRAAHRRAAE----AERQAESAE 806 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------CchHHHHHHHHHHH----HHHHHHHHH
Confidence 35677888888888888888888888888877766543222211 22455555555444 355566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHH
Q 045447 1217 TEKLRLQKQLESALKAAENAQASLTTERANSRAMLLTEEEIKSLKLQVRELNLLRESNVQLREENKYNFEECQKLREVAQ 1296 (2058)
Q Consensus 1217 qE~~RLqqQle~~qkqLdEar~~L~~Ere~s~t~~~s~e~hkeLmeKleqLNlLRESN~tLReE~~~~~~k~qkL~e~lq 1296 (2058)
.+..+.+.++..+...+..++..+.+-..... .......|..+..- |..|+..=..|+.-...+ .
T Consensus 807 ~~l~~a~~~l~~a~~~~~~a~~~l~~aaa~l~-L~a~~~~l~~~~~a---L~~y~~~l~~l~~~~~~L-----------~ 871 (1353)
T TIGR02680 807 RELARAARKAAAAAAAWKQARRELERDAADLD-LPTDPDALEAVGLA---LKRFGDHLHTLEVAVREL-----------R 871 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCChhHHHHHHHH---HHHHHHHHHHHHHHHHHH-----------H
Confidence 78888888888888888888877765543322 33345556665333 334444444443332211 1
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 045447 1297 KTKSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEET 1376 (2058)
Q Consensus 1297 k~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~ 1376 (2058)
.+...+......+..+...+.....+...++.+...+..+...|-..-+. .++.+..+|..+...|.....++..+
T Consensus 872 ~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~----~~eel~a~L~e~r~rL~~l~~el~~~ 947 (1353)
T TIGR02680 872 HAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGA----MVDEIRARLAETRAALASGGRELPRL 947 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222333444455555555555666666666666666666666553211 25666677776666666666666555
Q ss_pred HhhhhhhhhHHHHHHHHH
Q 045447 1377 RNLLSTKLDTISQLEQEL 1394 (2058)
Q Consensus 1377 ~~~l~~~~~~~~~l~~~L 1394 (2058)
.+.+......+..++.++
T Consensus 948 ~~~~~~a~~~~~~a~~~~ 965 (1353)
T TIGR02680 948 AEALATAEEARGRAEEKR 965 (1353)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555554444444444444
No 262
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=57.92 E-value=1.5e+02 Score=34.87 Aligned_cols=74 Identities=28% Similarity=0.332 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHhHHHHHhhHHH
Q 045447 810 QRVYRLQASLDTIQNAEEVREEARAAERRKQEEYIKQVE---------------REWAEAKKELQEERDNVRLLTSDREQ 874 (2058)
Q Consensus 810 ~e~~rLqs~L~tiQs~~e~REeses~~Rrrle~~Ie~LE---------------~Els~lKkrL~eE~e~~r~L~~~re~ 874 (2058)
+.+.+||.-|..+|.--+-||..+-.-|-+|+..++.|- .....|+..|.+..+.+-.|..+.
T Consensus 3 ekv~~LQ~AL~~LQaa~ekRE~lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErILaLEad~-- 80 (205)
T PF12240_consen 3 EKVERLQQALAQLQAACEKREQLERRLRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERILALEADM-- 80 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH--
Confidence 456778888888888877787776666666666665551 234556777776666555543322
Q ss_pred HHHHHHHHHHHH
Q 045447 875 TLKNAVKQVEEM 886 (2058)
Q Consensus 875 ~~~e~qkrid~l 886 (2058)
.+|-|+=+++.
T Consensus 81 -~kWEqkYLEEs 91 (205)
T PF12240_consen 81 -TKWEQKYLEES 91 (205)
T ss_pred -HHHHHHHHHHH
Confidence 36777776663
No 263
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=57.61 E-value=82 Score=38.56 Aligned_cols=48 Identities=19% Similarity=0.289 Sum_probs=36.4
Q ss_pred hhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1380 LSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQKRISAQLRR 1434 (2058)
Q Consensus 1380 l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~ 1434 (2058)
+.....+++.++..+..+.++...|+.||.-. +.|+|+.++.+.+++.
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekk-------k~ELER~qKRL~sLq~ 218 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKK-------KQELERNQKRLQSLQS 218 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Confidence 34445667788888888888888888888776 7778888888887774
No 264
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=57.61 E-value=1.2e+02 Score=37.97 Aligned_cols=6 Identities=50% Similarity=0.678 Sum_probs=2.1
Q ss_pred HHHHHH
Q 045447 1448 KENQSL 1453 (2058)
Q Consensus 1448 ~e~~~l 1453 (2058)
.+.+++
T Consensus 113 ~e~~sl 118 (314)
T PF04111_consen 113 EERDSL 118 (314)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 265
>PRK10869 recombination and repair protein; Provisional
Probab=57.17 E-value=6.5e+02 Score=34.14 Aligned_cols=19 Identities=5% Similarity=0.338 Sum_probs=14.3
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 045447 1346 NIDVEDYDRLKVEVRQMEE 1364 (2058)
Q Consensus 1346 riDPeE~e~Lk~Eie~Le~ 1364 (2058)
...|.|++.|..++..|..
T Consensus 201 ~l~~gE~eeL~~e~~~L~n 219 (553)
T PRK10869 201 APQPGEFEQIDEEYKRLAN 219 (553)
T ss_pred CCCCCcHHHHHHHHHHHHH
Confidence 4467788888888877764
No 266
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=56.82 E-value=5.8e+02 Score=33.49 Aligned_cols=29 Identities=7% Similarity=0.148 Sum_probs=19.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 941 QVGKEELEKLKEEAQANREHMLQYKSIAQ 969 (2058)
Q Consensus 941 ~~lk~ELe~lkeeL~~Ak~qveQYK~IAq 969 (2058)
..+..++..++.++...+.+...+.+.-.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~rL~a~~~ 121 (457)
T TIGR01000 93 GNEENQKQLLEQQLDNLKDQKKSLDTLKQ 121 (457)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777777777666543
No 267
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=56.46 E-value=4.1e+02 Score=31.66 Aligned_cols=78 Identities=24% Similarity=0.251 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045447 946 ELEKLKEEAQANREHMLQYKSIAQVNEAALKEMETVHENFRTRVEGVKKSLEDELHSLRKRVSELERENILKSEEIAS 1023 (2058)
Q Consensus 946 ELe~lkeeL~~Ak~qveQYK~IAqsaEeaL~~l~~~~e~yK~e~E~~l~e~e~ei~~L~~ri~eLe~El~~~~eE~~~ 1023 (2058)
+++..+.-|.+|+.+.++-..--...|=-.+--..+.-.|-..++..++.++..+..+++.|.+++..-...+.+.+.
T Consensus 98 d~~~w~~al~na~a~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~ 175 (221)
T PF05700_consen 98 DVEAWKEALDNAYAQLEHQRLRLENLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGE 175 (221)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 556667777777777766443333332211222233445556677888888999999999999888876555555443
No 268
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=56.27 E-value=2.9e+02 Score=34.06 Aligned_cols=51 Identities=20% Similarity=0.384 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1102 LASLQEQASELRKLADALKAENSELKSKWELEKSVLEKLKNEAEEKYDEVNEQNKILHSRLEALH 1166 (2058)
Q Consensus 1102 ~~~lq~e~~elr~~aesak~~L~e~e~SWeeqk~~Le~Ei~el~~R~eDL~~QN~LLH~QLE~lt 1166 (2058)
++..+.+|-+||+-+++.++.|... =..+++-.-|+|-||+-|..=|.++-
T Consensus 119 LKEARkEIkQLkQvieTmrssL~ek--------------DkGiQKYFvDINiQN~KLEsLLqsME 169 (305)
T PF15290_consen 119 LKEARKEIKQLKQVIETMRSSLAEK--------------DKGIQKYFVDINIQNKKLESLLQSME 169 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchh--------------hhhHHHHHhhhhhhHhHHHHHHHHHH
Confidence 4566678888888888777776653 23588899999999999888888765
No 269
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=56.12 E-value=3.1e+02 Score=36.25 Aligned_cols=38 Identities=18% Similarity=0.118 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHhhhhhHH
Q 045447 182 LTQGKELIERHNAWLNEELTSKVNSLVELRRTHADLEA 219 (2058)
Q Consensus 182 LeQE~eLLqknneWLe~ELk~KteEll~~Rre~~~~e~ 219 (2058)
+.+++.-+.-+..-+.+||..||.++..+-.+++.+..
T Consensus 203 ~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLls 240 (596)
T KOG4360|consen 203 CVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLS 240 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777788888899999999999888888765433
No 270
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=54.82 E-value=6.8e+02 Score=33.66 Aligned_cols=25 Identities=16% Similarity=0.413 Sum_probs=20.4
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHH
Q 045447 1342 QRCRNIDVEDYDRLKVEVRQMEEKL 1366 (2058)
Q Consensus 1342 eKy~riDPeE~e~Lk~Eie~Le~~L 1366 (2058)
+.-..++|+.|+.|-.+|+.|+..+
T Consensus 46 e~I~~m~~~~~~~L~~eI~~LK~~~ 70 (574)
T PF07462_consen 46 ELINKMTEEKWNALGEEIEELKKKI 70 (574)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 3345799999999999999998633
No 271
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=54.80 E-value=7.4e+02 Score=34.47 Aligned_cols=31 Identities=16% Similarity=0.152 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhHHHHHhhhHHHHHHHHHhhh
Q 045447 185 GKELIERHNAWLNEELTSKVNSLVELRRTHA 215 (2058)
Q Consensus 185 E~eLLqknneWLe~ELk~KteEll~~Rre~~ 215 (2058)
...+.-+...-++.++.....+|...+-...
T Consensus 169 ~~~~~~k~~~~~~~~~~~~~~~l~~v~~~~~ 199 (670)
T KOG0239|consen 169 LLDLALKESLKLESDLGDLVTELEHVTNSIS 199 (670)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3446667777788888888888877776643
No 272
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=54.75 E-value=6.6e+02 Score=33.49 Aligned_cols=27 Identities=30% Similarity=0.533 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 687 EKMAERVRCLEDDLGKARSEIIALRSE 713 (2058)
Q Consensus 687 ~q~~e~~k~L~eql~k~r~El~~LrsE 713 (2058)
+.+-+++|.+.+++..+|.+..-|+-|
T Consensus 162 EaL~ekLk~~~een~~lr~k~~llk~E 188 (596)
T KOG4360|consen 162 EALQEKLKPLEEENTQLRSKAMLLKTE 188 (596)
T ss_pred HHHHhhcCChHHHHHHHHHHHHHHHhh
Confidence 345566666766666666666555433
No 273
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=54.39 E-value=4.6e+02 Score=31.59 Aligned_cols=75 Identities=16% Similarity=0.262 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHH
Q 045447 1320 KKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRL 1399 (2058)
Q Consensus 1320 ~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~ 1399 (2058)
..++..++.....|+.++..-|.+-+ ..=-..+-.++..|+..+... +..++.+++.+..++.
T Consensus 58 e~~~~~~~~~~~k~e~~A~~Al~~g~---E~LAr~al~~~~~le~~~~~~--------------~~~~~~~~~~~~~l~~ 120 (225)
T COG1842 58 ERKLEEAQARAEKLEEKAELALQAGN---EDLAREALEEKQSLEDLAKAL--------------EAELQQAEEQVEKLKK 120 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
Confidence 55667778888899999999999654 333444444455554433333 3333444445555555
Q ss_pred HHHHHHHHhhhH
Q 045447 1400 ELSEKEKRLSDI 1411 (2058)
Q Consensus 1400 e~~~le~k~~d~ 1411 (2058)
.+..|+.||.++
T Consensus 121 ~~~~Le~Ki~e~ 132 (225)
T COG1842 121 QLAALEQKIAEL 132 (225)
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 274
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=54.04 E-value=4.3e+02 Score=31.16 Aligned_cols=80 Identities=23% Similarity=0.313 Sum_probs=55.8
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 045447 1296 QKTKSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEE 1375 (2058)
Q Consensus 1296 qk~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~ 1375 (2058)
..++..+..++..|+.+.-+-+.+......+..|++-|..|....+.-+..--------|...+..|...|..+.+++..
T Consensus 89 ~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~e 168 (201)
T PF13851_consen 89 QNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNE 168 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566667777888888888888888999999999999988887664433333334555566666666666666643
No 275
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=53.61 E-value=7e+02 Score=33.43 Aligned_cols=42 Identities=19% Similarity=0.158 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 691 ERVRCLEDDLGKARSEIIALRSERDKLALEAEFAREKLDSVMREA 735 (2058)
Q Consensus 691 e~~k~L~eql~k~r~El~~LrsE~~K~s~q~e~a~ER~e~Lq~n~ 735 (2058)
.+++.+.+.|..+|.....-.+++-+.. .-+..|+..|+..+
T Consensus 99 ~rLvevre~L~~irr~q~~q~~erk~~~---qe~~~rl~~L~~~L 140 (531)
T PF15450_consen 99 KRLVEVREALTQIRRKQALQDSERKGSE---QEAGLRLSKLQDML 140 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHH
Confidence 3677788888888877766666665543 33777888888764
No 276
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=53.40 E-value=1e+02 Score=29.35 Aligned_cols=49 Identities=22% Similarity=0.384 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 686 QEKMAERVRCLEDDLGKARSEIIALRSERDKLALEAEFAREKLDSVMRE 734 (2058)
Q Consensus 686 ~~q~~e~~k~L~eql~k~r~El~~LrsE~~K~s~q~e~a~ER~e~Lq~n 734 (2058)
..++...+..|+.+++.+..++..++.+...+..++.-|++|+...-..
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~s 53 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQS 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Confidence 3567778889999999999999999999988888889999999875443
No 277
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=52.74 E-value=90 Score=33.22 Aligned_cols=92 Identities=16% Similarity=0.288 Sum_probs=54.1
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 408 LRDGWSLAKIYAKYQEAVDALRHE-QLGRKESEAVLQRVLYELEEKAGIILDERAEYERMVDAYSAINQKLQNFISEKSS 486 (2058)
Q Consensus 408 ~KsG~SLTqlYt~Yve~k~qL~~E-r~en~rLq~~Ld~Iv~ELEeKAP~L~eqR~EyErl~~~~~~Ls~~Leqa~~Erd~ 486 (2058)
+.-| +.+.+|.+..++.++|... ....+....++++++.++...--.+.+. +...+..|...++ -
T Consensus 14 ~gaG-~~a~~~ek~~klvDelVkkGeln~eEak~~vddl~~q~k~~~~e~e~K------~~r~i~~ml~~~~-------~ 79 (108)
T COG3937 14 IGAG-LAAETAEKVQKLVDELVKKGELNAEEAKRFVDDLLRQAKEAQGELEEK------IPRKIEEMLSDLE-------V 79 (108)
T ss_pred hhcc-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhHHHh------hhHHHHHHHhhcc-------c
Confidence 3456 7888899999999999753 2334556678899998887444444332 2223333333332 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045447 487 LEKTIQELKADLRMRERDYYLAQKEISDLQKQV 519 (2058)
Q Consensus 487 leke~r~a~~~l~~~eREn~~Lk~Ql~DLsrQV 519 (2058)
++ ++....+.-++..|++|++||..+.
T Consensus 80 ~r------~~~~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 80 AR------QSEMDELTERVDALERQVADLENKL 106 (108)
T ss_pred cc------cchHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 1223334456677777777776554
No 278
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=52.60 E-value=4.3e+02 Score=32.57 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045447 1313 QIEIEACKKEMEKQRMEKENLEKRVSELLQ 1342 (2058)
Q Consensus 1313 ~~elE~~~~Ei~~LqeE~~RWkqR~q~LLe 1342 (2058)
++.+..+--....|.++...|++|+-.|+.
T Consensus 51 ~~ql~ll~~~~k~L~aE~~qwqk~~peii~ 80 (268)
T PF11802_consen 51 DAQLSLLMMRVKCLTAELEQWQKRTPEIIP 80 (268)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhcCCCcCC
Confidence 345555666778899999999999987775
No 279
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=52.32 E-value=91 Score=30.79 Aligned_cols=56 Identities=27% Similarity=0.196 Sum_probs=35.8
Q ss_pred HhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1377 RNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQKRISAQL 1432 (2058)
Q Consensus 1377 ~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~ 1432 (2058)
.+.+......+......+..++.+++....++.++-.+..-|+.+++.+++.+...
T Consensus 11 r~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 11 RNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444445556666666777777777777777777777777777666665443
No 280
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=52.29 E-value=78 Score=37.33 Aligned_cols=43 Identities=23% Similarity=0.384 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 53 CSLLEQKFISLQEEFSKVESQNAQLQKSLDDRVNELAEVQSQK 95 (2058)
Q Consensus 53 ~~~lEqk~~sl~~e~~~le~e~~eL~~~l~~~~~Ela~~q~~~ 95 (2058)
|.++-..|.+|+.+|..+..++.+|...+.+..+++...+.++
T Consensus 130 ~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erl 172 (290)
T COG4026 130 YMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERL 172 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356667778888888888888777776665555555554443
No 281
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=52.11 E-value=2.2e+02 Score=29.66 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 67 FSKVESQNAQLQKSLDDRVNELAEVQ 92 (2058)
Q Consensus 67 ~~~le~e~~eL~~~l~~~~~Ela~~q 92 (2058)
+..++....++...+.....++....
T Consensus 5 L~~~~~a~~~~~~~~~~k~~~~~~lE 30 (96)
T PF08647_consen 5 LVSMEQAFKELSEQADKKVKELTILE 30 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444433344443333
No 282
>PRK15396 murein lipoprotein; Provisional
Probab=51.78 E-value=63 Score=32.65 Aligned_cols=46 Identities=11% Similarity=0.289 Sum_probs=32.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 045447 1301 DCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRN 1346 (2058)
Q Consensus 1301 elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~r 1346 (2058)
+++.|..++..+...+......+..-++|..|-.+|...+...|.+
T Consensus 33 qV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~~sy~k 78 (78)
T PRK15396 33 DVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQATKYRK 78 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4444555555555555555556666778889999999999999964
No 283
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=51.77 E-value=1.2e+02 Score=36.54 Aligned_cols=63 Identities=17% Similarity=0.258 Sum_probs=49.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 045447 1402 SEKEKRLSDISQAEAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLKQGK 1464 (2058)
Q Consensus 1402 ~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k~~~ 1464 (2058)
....++++.+..+...|..++..+.+.+..++.....+........+++.+|+++++.+....
T Consensus 38 ~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~ 100 (251)
T PF11932_consen 38 QQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETR 100 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777877788888888888888888888778888888888888888888888777544
No 284
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=51.73 E-value=4.5e+02 Score=30.67 Aligned_cols=90 Identities=19% Similarity=0.358 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHhhhhhHHHHH---hhHHHHHHHHHHhhhhhhh
Q 045447 165 LAETEAELARAQATCTRLTQGKELIERHNAWLNEELTSKVNSLVELRRTHADLEADMS---AKLSDVERQFSECSSSLNW 241 (2058)
Q Consensus 165 l~e~es~~~s~k~~e~RLeQE~eLLqknneWLe~ELk~KteEll~~Rre~~~~e~~l~---aki~eLqre~~E~~ssL~~ 241 (2058)
-.++.+.+.++..||..|+.+++.+++=...-+.|=+.-.+.-..+-++...-...+. .++.-|+.++.-+.+.=..
T Consensus 59 ~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ 138 (178)
T PF14073_consen 59 NQDLSSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSL 138 (178)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888899999999999999999998888777766555544444444322122233 3444455555444443333
Q ss_pred hHHHHHHHHHHHH
Q 045447 242 NKERVRELEIKLS 254 (2058)
Q Consensus 242 sk~rv~eLe~Kl~ 254 (2058)
...++..|+.||.
T Consensus 139 ae~Ki~~LE~KL~ 151 (178)
T PF14073_consen 139 AETKIKELEEKLQ 151 (178)
T ss_pred HHHHHHHHHHHHH
Confidence 4566777776653
No 285
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=50.61 E-value=7.6e+02 Score=32.98 Aligned_cols=59 Identities=15% Similarity=0.275 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1104 SLQEQASELRKLADALKAENSELKSKWELEKSVLEKLKNEAEEKYDEVNEQNKILHSRLEALHIQL 1169 (2058)
Q Consensus 1104 ~lq~e~~elr~~aesak~~L~e~e~SWeeqk~~Le~Ei~el~~R~eDL~~QN~LLH~QLE~lt~Qi 1169 (2058)
.+..++..++.....+...+...+..++..+...++. +..|..--.-|..|+++|..+|
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek-------~~~l~~~~~~L~~~F~~LA~~i 122 (475)
T PRK10361 64 LLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDK-------IRQMINSEQRLSEQFENLANRI 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444443333 3344444444666777777665
No 286
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=50.59 E-value=4.8e+02 Score=33.51 Aligned_cols=23 Identities=13% Similarity=0.330 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 045447 77 LQKSLDDRVNELAEVQSQKHQLH 99 (2058)
Q Consensus 77 L~~~l~~~~~Ela~~q~~~~~L~ 99 (2058)
|+++++....++..+++++...+
T Consensus 264 iN~qle~l~~eYr~~~~~ls~~~ 286 (359)
T PF10498_consen 264 INNQLEPLIQEYRSAQDELSEVQ 286 (359)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444333
No 287
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=50.23 E-value=4.1e+02 Score=32.08 Aligned_cols=39 Identities=5% Similarity=-0.041 Sum_probs=19.8
Q ss_pred HHHHHhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 045447 1498 EELKKEKDDNQKEKEKRLKGEKVMLDSAKLADQWKTRIS 1536 (2058)
Q Consensus 1498 ~~~~~e~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 1536 (2058)
+...++++.+.........+...|+..+..+-..+..|.
T Consensus 80 ~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v 118 (251)
T PF11932_consen 80 ASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFV 118 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555555543
No 288
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=49.74 E-value=8.2e+02 Score=33.14 Aligned_cols=72 Identities=18% Similarity=0.290 Sum_probs=36.1
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhH
Q 045447 1340 LLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDI 1411 (2058)
Q Consensus 1340 LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~ 1411 (2058)
++.+-..+++++-+.+.+++..|...+..+..++.....+....+.++..=...++..+..+........++
T Consensus 404 ~i~~~~~~~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~ 475 (607)
T KOG0240|consen 404 SITKLKGSLEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEI 475 (607)
T ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 344444456677777777777777666666666654443333333333333333333333333333333333
No 289
>PRK10698 phage shock protein PspA; Provisional
Probab=49.60 E-value=5.3e+02 Score=30.88 Aligned_cols=16 Identities=19% Similarity=0.511 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhcCCCCHH
Q 045447 1333 LEKRVSELLQRCRNIDVE 1350 (2058)
Q Consensus 1333 WkqR~q~LLeKy~riDPe 1350 (2058)
-+.-++.+|+|.. ||+
T Consensus 11 i~a~in~~ldkaE--DP~ 26 (222)
T PRK10698 11 VNANINALLEKAE--DPQ 26 (222)
T ss_pred HHhHHHHHHHhhc--CHH
Confidence 4667888999986 898
No 290
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=49.57 E-value=1.4e+02 Score=37.31 Aligned_cols=98 Identities=17% Similarity=0.124 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 417 IYAKYQEAVDALRHEQLGRKESEAVLQRVLYELEEKAGIILDERAEYERMVDAYSAINQKLQNFISEKSSLEKTIQELKA 496 (2058)
Q Consensus 417 lYt~Yve~k~qL~~Er~en~rLq~~Ld~Iv~ELEeKAP~L~eqR~EyErl~~~~~~Ls~~Leqa~~Erd~leke~r~a~~ 496 (2058)
+-.++.++.+-+++-+.+|.+++.+|+.++++.-+|--.-..+..|...+..-...|....+..+.|-.+.-
T Consensus 125 ~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml-------- 196 (401)
T PF06785_consen 125 TKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSML-------- 196 (401)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhh--------
Confidence 346889999999999999999999999999998777655555555555555544445444444444433322
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 045447 497 DLRMRERDYYLAQKEISDLQKQVTVLLK 524 (2058)
Q Consensus 497 ~l~~~eREn~~Lk~Ql~DLsrQV~vLL~ 524 (2058)
...+.-+..|+..+.||---|+.||.
T Consensus 197 --~kRQ~yI~~LEsKVqDLm~EirnLLQ 222 (401)
T PF06785_consen 197 --DKRQAYIGKLESKVQDLMYEIRNLLQ 222 (401)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334556677777777777777776
No 291
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=49.48 E-value=5.1e+02 Score=30.64 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=11.2
Q ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHH
Q 045447 187 ELIERHNAWLNEELTSKVNSLVELRR 212 (2058)
Q Consensus 187 eLLqknneWLe~ELk~KteEll~~Rr 212 (2058)
++.....--|.++|+.....+-.|+.
T Consensus 105 E~~Es~~~eLeEe~~~~~~nlk~l~~ 130 (205)
T KOG1003|consen 105 EAAESQSEELEEDLRILDSNLKSLSA 130 (205)
T ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 33344444444444444444444443
No 292
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=49.10 E-value=72 Score=38.69 Aligned_cols=48 Identities=19% Similarity=0.152 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 045447 109 IERLTMEVAELHKSRRQLMELVEQKDLQHSEKGATIKAYLDKIINLTD 156 (2058)
Q Consensus 109 verLr~ei~eLe~ekr~ll~llErk~~e~eel~e~l~~l~eKi~eL~~ 156 (2058)
=+|||.++.+||.+.|.+-..+..-..+++.|..|--+|-+||.=|..
T Consensus 88 RDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 88 RDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 399999999999999999999999999999999998888888766643
No 293
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=48.94 E-value=7.4e+02 Score=32.33 Aligned_cols=52 Identities=19% Similarity=0.158 Sum_probs=26.4
Q ss_pred cccCCCCcccccCCCCcccccccCCCCCCCCCcccccccCCCcCCCCCCCcchhhccccc
Q 045447 1656 RVNLPKTNAETRKPGRRLVRPRLKRPEESQGDMETSEAEGSNITGKVAASHDAETQGNLA 1715 (2058)
Q Consensus 1656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1715 (2058)
|...|-|..+.+- +-||--+-|.+|+- -+.+.|+++ |-|.+....-.-|.++
T Consensus 506 rs~~~S~~~~~~a----~s~~~~~~p~~p~m---~~~~~~s~n-~~~S~~~~~l~~g~~P 557 (575)
T KOG4403|consen 506 RSEDTSPIVEDVA----ISRSLTQDPAEPDM---QSIVSGSTN-GSGSVAALKLRKGIFP 557 (575)
T ss_pred cccCCCCchhhhh----hhccccCCCCCccc---ccccccCCC-CCCCchhhhhhhccCh
Confidence 6666777776655 44444456666631 135566665 3333333333333333
No 294
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=48.11 E-value=2.8e+02 Score=28.90 Aligned_cols=56 Identities=14% Similarity=0.129 Sum_probs=37.1
Q ss_pred hhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1379 LLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQKRISAQLRR 1434 (2058)
Q Consensus 1379 ~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~ 1434 (2058)
.+...++.+..|..+.+....+.....+-...+..+...|...+.+.......++.
T Consensus 25 ~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 25 ELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33445555566666666666666666777777777777777777777777777665
No 295
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=47.39 E-value=6.8e+02 Score=31.51 Aligned_cols=85 Identities=25% Similarity=0.408 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 262 SSKDAAAANEERFSTELSTVNKLVE-----LYKESSEEWSRKAGELEGVIKALETQLAQVQNDCKEKLEKEVSAREQLEK 336 (2058)
Q Consensus 262 ~~ke~~a~~ee~fr~EL~aq~RLae-----Lyke~aee~~~k~~ELe~~ikeLe~~L~q~e~~~~e~LEkE~~~~~~lEk 336 (2058)
.+++..+..+++|++-|-+.-.|=+ +| .-+..+.++.+++..+..++..+.+ .++ .++........+..
T Consensus 81 ~lk~~l~evEekyrkAMv~naQLDNek~~l~y--qvd~Lkd~lee~eE~~~~~~re~~e---K~~-elEr~K~~~d~L~~ 154 (302)
T PF09738_consen 81 DLKDSLAEVEEKYRKAMVSNAQLDNEKSALMY--QVDLLKDKLEELEETLAQLQREYRE---KIR-ELERQKRAHDSLRE 154 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHH
Confidence 3567777778888888866655532 22 2233344444444333333333321 111 24444455556666
Q ss_pred HHHHHHHHHHHHHHHH
Q 045447 337 EAMDLKEKLEKCEAEI 352 (2058)
Q Consensus 337 e~~eLkekl~~lE~El 352 (2058)
++..|++.|.....-|
T Consensus 155 e~~~Lre~L~~rdeli 170 (302)
T PF09738_consen 155 ELDELREQLKQRDELI 170 (302)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777776655444
No 296
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=47.30 E-value=1.3e+03 Score=34.55 Aligned_cols=36 Identities=28% Similarity=0.504 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHH
Q 045447 1315 EIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVE 1350 (2058)
Q Consensus 1315 elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPe 1350 (2058)
.+..++.++.-|++++.....+.+.++.++..--+.
T Consensus 879 ~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~ 914 (1294)
T KOG0962|consen 879 RLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVE 914 (1294)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhh
Confidence 344456666667777777777777777776655553
No 297
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=46.76 E-value=92 Score=37.70 Aligned_cols=54 Identities=13% Similarity=0.149 Sum_probs=40.4
Q ss_pred hhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Q 045447 1381 STKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQKRISAQLR-------RKCEMLSK 1441 (2058)
Q Consensus 1381 ~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k-------~~~e~~~~ 1441 (2058)
...+.++++++..|+.+.++.++|..||.-. +.|++.+++.+++++ .+|+.+.+
T Consensus 115 q~i~~~~q~~~~~Lnnvasdea~L~~Kierr-------k~ElEr~rkRle~LqsiRP~~MdEyE~~Ee 175 (338)
T KOG3647|consen 115 QAIQVRLQSSRAQLNNVASDEAALGSKIERR-------KAELERTRKRLEALQSIRPAHMDEYEDCEE 175 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3445667889999999999999999988776 677777777777776 35555544
No 298
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=46.61 E-value=1.9e+02 Score=39.02 Aligned_cols=111 Identities=15% Similarity=0.230 Sum_probs=59.6
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHH
Q 045447 1336 RVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAE 1415 (2058)
Q Consensus 1336 R~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~ 1415 (2058)
....||.+++==.+..++.++..+...+.......++++ ..+.+..+++.+.+++. ++|++. ...
T Consensus 150 ~~~eil~~~~L~T~~~~~~~~~~~k~~~~~w~~~~~~Lp--------~~~~~~~yk~~v~~i~~------~~ik~p-~~i 214 (555)
T TIGR03545 150 DPRALLKGEDLKTVETAEEIEKSLKAMQQKWKKRKKDLP--------NKQDLEEYKKRLEAIKK------KDIKNP-LEL 214 (555)
T ss_pred CHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhHHHHHHHHHHHHh------ccCCCH-HHH
Confidence 345566666555555555555555555544433333332 01222233333333222 234433 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 045447 1416 AARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLKQGK 1464 (2058)
Q Consensus 1416 ~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k~~~ 1464 (2058)
...++++++++....+-+.++..+++ ++......+++++.++|+..
T Consensus 215 ~~~~~e~d~lk~e~~~~~~~i~~~~~---~l~~~~~~~~~~~~~lk~ap 260 (555)
T TIGR03545 215 QKIKEEFDKLKKEGKADKQKIKSAKN---DLQNDKKQLKADLAELKKAP 260 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHhcc
Confidence 45566777777777776666665544 56667778888888888654
No 299
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=46.61 E-value=1e+02 Score=37.73 Aligned_cols=60 Identities=17% Similarity=0.340 Sum_probs=40.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCH---HHHHHHHHHHHHHH
Q 045447 1300 SDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDV---EDYDRLKVEVRQME 1363 (2058)
Q Consensus 1300 ~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDP---eE~e~Lk~Eie~Le 1363 (2058)
.+++.++..+..+.++-..++..|+.-+.|.+|-++|.+. -..|=| +||++|..++..|=
T Consensus 176 ~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~s----Lq~vRPAfmdEyEklE~EL~~lY 238 (267)
T PF10234_consen 176 QQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQS----LQSVRPAFMDEYEKLEEELQKLY 238 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcChHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555666666777777799999544 457888 58999888887664
No 300
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=45.75 E-value=5.5e+02 Score=29.93 Aligned_cols=42 Identities=21% Similarity=0.391 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 045447 106 DGEIERLTMEVAELHKSRRQLMELVEQKDLQHSEKGATIKAY 147 (2058)
Q Consensus 106 dseverLr~ei~eLe~ekr~ll~llErk~~e~eel~e~l~~l 147 (2058)
--+|..++.+|.+|+.--+.++.+||++....++|.++++.+
T Consensus 113 ~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~~~~~~~ 154 (189)
T TIGR02132 113 KKDVTKLKQDIKSLDKKLDKILELLEGQQKTQDELKETIQKQ 154 (189)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHH
Confidence 357888999999999999999999999999889988888654
No 301
>PRK09343 prefoldin subunit beta; Provisional
Probab=45.40 E-value=3.7e+02 Score=29.18 Aligned_cols=30 Identities=10% Similarity=0.245 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 045447 1434 RKCEMLSKEKEESIKENQSLARQLDDLKQG 1463 (2058)
Q Consensus 1434 ~~~e~~~~e~~e~~~e~~~l~~q~~~~k~~ 1463 (2058)
.+...+.++...+.+....++.+|..+-++
T Consensus 85 ~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 85 LRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444466666666666666666666543
No 302
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=45.30 E-value=2.6e+02 Score=34.40 Aligned_cols=74 Identities=22% Similarity=0.299 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHH
Q 045447 1331 ENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEK 1406 (2058)
Q Consensus 1331 ~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~ 1406 (2058)
+-+++|...|++.-...| .|+.+..+.+.....+.....+++.....|..++..++.+++.+.+++..+..++-
T Consensus 169 ~WLR~~L~Ei~Ea~e~~~--~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~ 242 (269)
T PF05278_consen 169 DWLRSKLEEILEAKEIYD--QHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEM 242 (269)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334777777776533332 34445555555554444444455433333344444444444444444444444333
No 303
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=45.08 E-value=81 Score=33.52 Aligned_cols=68 Identities=24% Similarity=0.199 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhhcC--CCCCcceeecc----CccchhhhhhHH
Q 045447 1519 KVMLDSAKLADQWKTRISSELEQHKQAVKR-------LSDELEKLKHTEAG--LPEGTSVVQLL----SGTNLDDHASSY 1585 (2058)
Q Consensus 1519 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~-------l~~el~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~~~~~ 1585 (2058)
+.|+|++.++++.+..+-.++..+++.|.+ |+=|.++|+.-.|+ ++.-...-+-+ +|..-|-++.-|
T Consensus 4 keiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~~~~e~~~~~k~~~~~~~~~~~~dnL~~lY 83 (114)
T COG4467 4 KEIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGEPTLEKTAVKKEKPAVKKKGEGYDNLARLY 83 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCCccccchhhhcccccccccCCCchhHHHHH
Confidence 679999999999999999999988888877 66788999998888 55444444434 777777777777
Q ss_pred H
Q 045447 1586 F 1586 (2058)
Q Consensus 1586 ~ 1586 (2058)
=
T Consensus 84 ~ 84 (114)
T COG4467 84 Q 84 (114)
T ss_pred h
Confidence 3
No 304
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=44.57 E-value=9.5e+02 Score=32.35 Aligned_cols=50 Identities=10% Similarity=0.102 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 045447 1415 EAARKLEMEKQKRISAQLR----RKCEMLSKEKEESIKENQSLARQLDDLKQGK 1464 (2058)
Q Consensus 1415 ~~~l~~e~e~~~~~~~~~k----~~~e~~~~e~~e~~~e~~~l~~q~~~~k~~~ 1464 (2058)
+..+...+..++.++.+++ .++..+...+..++..+.....+|+.||.+.
T Consensus 464 L~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK~~~ 517 (518)
T PF10212_consen 464 LKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLKLAS 517 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3333444445555555555 3556667888888888888888888888543
No 305
>PRK10869 recombination and repair protein; Provisional
Probab=44.16 E-value=9.9e+02 Score=32.46 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=15.8
Q ss_pred ccccchHHHHHHhHHHHHHHHHhH
Q 045447 567 LTFKDINGLVEQNVQLRSLVRNLS 590 (2058)
Q Consensus 567 VtFkdI~ELQeQNqeLL~vvReLs 590 (2058)
.||..|..| ..+.+..-+.|-||
T Consensus 513 ~t~s~i~~L-~~~~R~~EiARMl~ 535 (553)
T PRK10869 513 MTETHMQPL-DKKARLQELARLLG 535 (553)
T ss_pred eeeEEEEEC-ChhHHHHHHHHHhC
Confidence 467777777 56677777777764
No 306
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=44.11 E-value=2.3e+02 Score=39.05 Aligned_cols=17 Identities=12% Similarity=0.259 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhhHHH
Q 045447 1116 ADALKAENSELKSKWEL 1132 (2058)
Q Consensus 1116 aesak~~L~e~e~SWee 1132 (2058)
.++.+..|...=.||-.
T Consensus 162 leslRVsL~~npVSwvn 178 (1102)
T KOG1924|consen 162 LESLRVSLTSNPVSWVN 178 (1102)
T ss_pred HHHHhhhhcCCccHHHH
Confidence 45566677777788874
No 307
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=43.75 E-value=2.3e+02 Score=28.31 Aligned_cols=54 Identities=17% Similarity=0.289 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045447 1119 LKAENSELKSKWELEKSVLEKLKNEAEEKYDEVNEQNKILHSRLEALHIQLTEK 1172 (2058)
Q Consensus 1119 ak~~L~e~e~SWeeqk~~Le~Ei~el~~R~eDL~~QN~LLH~QLE~lt~Qia~~ 1172 (2058)
.......--..|...=..|.........+...|..||+-|-.|+..++.++..+
T Consensus 15 Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 15 LQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444555677777777777777777777788888888888888887776544
No 308
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=43.52 E-value=4.1e+02 Score=29.40 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=16.4
Q ss_pred CChHHHhhhhhhHHHHHHHHHHHHHH
Q 045447 5 VSDEEMSRLSNDAAAVAAKADAYIRY 30 (2058)
Q Consensus 5 ~s~eEl~~~~~~~~~i~~K~e~~i~~ 30 (2058)
+|.+||..|-.|+ .+++.||..
T Consensus 4 lS~~eL~~Ll~d~----~~l~~~v~~ 25 (150)
T PF07200_consen 4 LSTEELQELLSDE----EKLDAFVKS 25 (150)
T ss_dssp -TTHHHHHHHHH-----HHHHHHGGG
T ss_pred CCHHHHHHHHcCH----HHHHHHHHc
Confidence 7889999999994 667777665
No 309
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=43.47 E-value=1.2e+02 Score=30.07 Aligned_cols=44 Identities=11% Similarity=0.232 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 045447 484 KSSLEKTIQELKADLRMRERDYYLAQKEISDLQKQVTVLLKECR 527 (2058)
Q Consensus 484 rd~leke~r~a~~~l~~~eREn~~Lk~Ql~DLsrQV~vLL~Ev~ 527 (2058)
....+..+..+...+....+++..|..++.+|++||..|-.-++
T Consensus 23 ~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~ 66 (70)
T PF04899_consen 23 QQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLE 66 (70)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777788888889999999999999999998866554
No 310
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=43.46 E-value=4.9e+02 Score=28.73 Aligned_cols=84 Identities=14% Similarity=0.211 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q 045447 1303 DNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLST 1382 (2058)
Q Consensus 1303 epLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~ 1382 (2058)
+.....+......+......+..|...+..+.++...-. ...++|.+|.....=|..|...+......+..++..+..
T Consensus 19 e~a~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~--~~g~~~~~l~~~~~fl~~L~~~i~~q~~~v~~~~~~ve~ 96 (146)
T PRK07720 19 EKALGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEEKL--QSGLSIQEIRHYQQFVTNLERTIDHYQLLVMQAREQMNR 96 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444556666666777778888888877777766644 357999999888888888877665555555544444444
Q ss_pred hhhHHH
Q 045447 1383 KLDTIS 1388 (2058)
Q Consensus 1383 ~~~~~~ 1388 (2058)
.+..|.
T Consensus 97 ~r~~~~ 102 (146)
T PRK07720 97 KQQDLT 102 (146)
T ss_pred HHHHHH
Confidence 444443
No 311
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=42.72 E-value=1.1e+03 Score=32.39 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=11.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHH
Q 045447 1402 SEKEKRLSDISQAEAARKLEME 1423 (2058)
Q Consensus 1402 ~~le~k~~d~~~~~~~l~~e~e 1423 (2058)
..||.+.-|+-.++-.||--+-
T Consensus 170 tsLETqKlDLmaevSeLKLklt 191 (861)
T KOG1899|consen 170 TSLETQKLDLMAEVSELKLKLT 191 (861)
T ss_pred hhHHHHHhHHHHHHHHhHHHHH
Confidence 4555555555555555544333
No 312
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=42.66 E-value=1.2e+03 Score=32.88 Aligned_cols=60 Identities=18% Similarity=0.178 Sum_probs=32.1
Q ss_pred HHHHhhhhhHHHHHHhhhh-hhHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHhhh
Q 045447 1499 ELKKEKDDNQKEKEKRLKG-EKVMLDSAKLADQWKTRI-SSELE--QHKQAVKRLSDELEKLKH 1558 (2058)
Q Consensus 1499 ~~~~e~~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~~~-~~~~e--~~~~~~~~l~~el~~~~~ 1558 (2058)
+|+.-.+.|+.|-.+-+++ +..-..-|..++|++++- .+.|- .+++-..+|..|+.....
T Consensus 670 ~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~~~~~a~~~~~lkek~e~l~~e~~~~~~ 733 (762)
T PLN03229 670 DLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEALNSSELKEKFEELEAELAAARE 733 (762)
T ss_pred hHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHhhc
Confidence 4555666666665555544 333334566677666543 33333 445555566666655444
No 313
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=42.47 E-value=9.4e+02 Score=31.73 Aligned_cols=14 Identities=29% Similarity=0.422 Sum_probs=8.2
Q ss_pred HHhHHHHHHHHHHH
Q 045447 511 EISDLQKQVTVLLK 524 (2058)
Q Consensus 511 Ql~DLsrQV~vLL~ 524 (2058)
+-.+|---||+||+
T Consensus 139 ~Fn~le~e~Chll~ 152 (493)
T KOG0804|consen 139 QFNSLEPEVCHLLY 152 (493)
T ss_pred cCCCCCccceeEEE
Confidence 34444455777776
No 314
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=42.39 E-value=4.6e+02 Score=28.79 Aligned_cols=17 Identities=35% Similarity=0.368 Sum_probs=9.3
Q ss_pred HHHHHHHHhhHHHHHHH
Q 045447 1388 SQLEQELANSRLELSEK 1404 (2058)
Q Consensus 1388 ~~l~~~L~~~~~e~~~l 1404 (2058)
++++..|.++.+-+.++
T Consensus 30 ~~le~qL~E~~~al~El 46 (119)
T COG1382 30 QQLEAQLKEIEKALEEL 46 (119)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555555554
No 315
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=42.24 E-value=1.6e+02 Score=31.26 Aligned_cols=60 Identities=13% Similarity=0.292 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 045447 465 RMVDAYSAINQKLQNFISEKSSL--EKTIQELKADLRMRERDYYLAQKEISDLQKQVTVLLK 524 (2058)
Q Consensus 465 rl~~~~~~Ls~~Leqa~~Erd~l--eke~r~a~~~l~~~eREn~~Lk~Ql~DLsrQV~vLL~ 524 (2058)
.+.+.+.....+++.+-.+.+.+ ..++..++..+....-+.+.+..++.-+++|+..||-
T Consensus 39 ~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 39 KLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444445555555555555 5666666677777777888888899999999998765
No 316
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=41.75 E-value=4.4e+02 Score=30.94 Aligned_cols=12 Identities=33% Similarity=0.540 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHh
Q 045447 1331 ENLEKRVSELLQ 1342 (2058)
Q Consensus 1331 ~RWkqR~q~LLe 1342 (2058)
.-.+.|...||+
T Consensus 89 ~~l~~RL~kLL~ 100 (190)
T PF05266_consen 89 KFLRSRLNKLLS 100 (190)
T ss_pred HHHHHHHHHHHH
Confidence 445566666665
No 317
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=41.57 E-value=1.5e+02 Score=35.38 Aligned_cols=64 Identities=20% Similarity=0.144 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcHH-HHHHHHHHHH-HHHHHHHhhHHHHHHhhhhHHHH
Q 045447 1220 LRLQKQLESALKAAENAQASLTTERANSRAMLLTEE-EIKSLKLQVR-ELNLLRESNVQLREENKYNFEEC 1288 (2058)
Q Consensus 1220 ~RLqqQle~~qkqLdEar~~L~~Ere~s~t~~~s~e-~hkeLmeKle-qLNlLRESN~tLReE~~~~~~k~ 1288 (2058)
+|-+++|+|+.-.-+-.|-+|. .+-.+.++- ..|.=|.+|+ ++-=|.|=|..|++||+.+..++
T Consensus 55 ~rKr~RL~HLS~EEK~~RrKLK-----NRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n 120 (292)
T KOG4005|consen 55 KRKRRRLDHLSWEEKVQRRKLK-----NRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAIN 120 (292)
T ss_pred HHHHHhhcccCHHHHHHHHHHH-----HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666665444444445552 221111111 1222344443 35567899999999998655444
No 318
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=41.53 E-value=6.5e+02 Score=29.61 Aligned_cols=39 Identities=10% Similarity=0.256 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1415 EAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSL 1453 (2058)
Q Consensus 1415 ~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l 1453 (2058)
....+.++..-...+...|++.+.|.+++.....+.+..
T Consensus 132 a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~t 170 (188)
T PF05335_consen 132 AEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKT 170 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555556666655555555555554444433
No 319
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=41.13 E-value=7.2e+02 Score=30.00 Aligned_cols=36 Identities=14% Similarity=0.243 Sum_probs=21.7
Q ss_pred HHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 045447 985 FRTRVEGVKKSLEDELHSLRKRVSELERENILKSEE 1020 (2058)
Q Consensus 985 yK~e~E~~l~e~e~ei~~L~~ri~eLe~El~~~~eE 1020 (2058)
++..+...+...++-..-|.+.|.+++.++......
T Consensus 11 ~~a~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~ 46 (225)
T COG1842 11 VKANINELLDKAEDPEKMLEQAIRDMESELAKARQA 46 (225)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666666667777777777666444333
No 320
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=40.83 E-value=8.7e+02 Score=30.85 Aligned_cols=76 Identities=22% Similarity=0.231 Sum_probs=35.9
Q ss_pred HhHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHhhhhhHHHHHhhHHHHHH----HHHHhhhhhhhhHHHHHHHHHHHHHH
Q 045447 181 RLTQGKELIERHNAWLNEELTSKVNSLVELRRTHADLEADMSAKLSDVER----QFSECSSSLNWNKERVRELEIKLSSL 256 (2058)
Q Consensus 181 RLeQE~eLLqknneWLe~ELk~KteEll~~Rre~~~~e~~l~aki~eLqr----e~~E~~ssL~~sk~rv~eLe~Kl~~l 256 (2058)
++.+|..-++=+-+-+..|.+.|.++.+.+-|+.... .+....|-. =+.+-.+-|..-..-+..|+.|+..|
T Consensus 138 ~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~----layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDL 213 (401)
T PF06785_consen 138 HLREENQCLQLQLDALQQECGEKEEESQTLNRELAEA----LAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDL 213 (401)
T ss_pred HHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH----HHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555666666666666663321 111122211 12223333444355567778777766
Q ss_pred HHHH
Q 045447 257 QEEF 260 (2058)
Q Consensus 257 qe~L 260 (2058)
--++
T Consensus 214 m~Ei 217 (401)
T PF06785_consen 214 MYEI 217 (401)
T ss_pred HHHH
Confidence 5433
No 321
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=40.65 E-value=6.2e+02 Score=29.12 Aligned_cols=80 Identities=29% Similarity=0.379 Sum_probs=45.6
Q ss_pred HHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCCCCCchhHHHHHHHHh
Q 045447 1124 SELKSKWE-LEKSVLEKLKNEAEEKYDEVNEQNKILHSRLEALHIQLTEKDGSSVRISSQSTDSNPIGDASLQSVISFLR 1202 (2058)
Q Consensus 1124 ~e~e~SWe-eqk~~Le~Ei~el~~R~eDL~~QN~LLH~QLE~lt~Qia~~~~~~a~~ss~s~~~~s~~~e~L~eVI~yLR 1202 (2058)
..+---|+ .-+.+|+.+|..+++-+++.... + +.=.|..||.||+
T Consensus 45 AACGFRWNs~VRkqY~~~i~~AKkqRk~~~~~-------------------------------~---~~ltl~~vI~fLq 90 (161)
T TIGR02894 45 AACGFRWNAYVRKQYEEAIELAKKQRKELKRE-------------------------------A---GSLTLQDVISFLQ 90 (161)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHhccccC-------------------------------c---ccCCHHHHHHHHH
Confidence 44556788 57889999999888766632110 0 1124788999999
Q ss_pred hhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1203 NRKSIAETEVALLTTEKLRLQKQLESALKAAENAQA 1238 (2058)
Q Consensus 1203 REKEIae~qlel~~qE~~RLqqQle~~qkqLdEar~ 1238 (2058)
.-+.... ...-...|+.+|+.++..++.+.+.+..
T Consensus 91 ~l~~~~~-~~~~~~~e~~~l~~e~~~l~~~~e~Le~ 125 (161)
T TIGR02894 91 NLKTTNP-SDQALQKENERLKNQNESLQKRNEELEK 125 (161)
T ss_pred HHHhcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8664311 1223344555555555444444443333
No 322
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=40.62 E-value=4.8e+02 Score=27.85 Aligned_cols=97 Identities=19% Similarity=0.212 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHH
Q 045447 34 DFETVKARADAAAITAEQTCSLLEQKFISLQEEFSKVESQNAQLQKSLDDRVNELAEVQSQKHQLHLQLIGKDGEIERLT 113 (2058)
Q Consensus 34 el~t~KA~~e~~~i~aEQ~~~~lEqk~~sl~~e~~~le~e~~eL~~~l~~~~~Ela~~q~~~~~L~~~~~~~dseverLr 113 (2058)
++..+....++-+.........+..+...|...-..++.....+..-|.........+......-......+..+|..|+
T Consensus 8 e~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~ 87 (126)
T PF13863_consen 8 EMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLK 87 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444443333322222222222222222222345567777777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045447 114 MEVAELHKSRRQLMELV 130 (2058)
Q Consensus 114 ~ei~eLe~ekr~ll~ll 130 (2058)
..|..|.+.+..+...|
T Consensus 88 ~~l~~l~~~~~k~e~~l 104 (126)
T PF13863_consen 88 AELEELKSEISKLEEKL 104 (126)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777666666555
No 323
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=40.39 E-value=2.3e+02 Score=32.30 Aligned_cols=77 Identities=14% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045447 1097 KTSQALASLQEQASELRKLADALKAENSELKSKWELEKSVLEKLKNEAEEKYDEVNEQNKILHSRLEALHIQLTEKD 1173 (2058)
Q Consensus 1097 k~~e~~~~lq~e~~elr~~aesak~~L~e~e~SWeeqk~~Le~Ei~el~~R~eDL~~QN~LLH~QLE~lt~Qia~~~ 1173 (2058)
.+...+..|+.....|......-+.....++.....-...++.+..++..+++.|..+|+-|+..+.+++.+++.+.
T Consensus 47 ~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rle 123 (158)
T PF09744_consen 47 EHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLE 123 (158)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccc
No 324
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.09 E-value=3.7e+02 Score=26.75 Aligned_cols=60 Identities=17% Similarity=0.301 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 045447 465 RMVDAYSAINQKLQNFISEKSSLEKTIQELKADLRMRERDYYLAQKEISDLQKQVTVLLK 524 (2058)
Q Consensus 465 rl~~~~~~Ls~~Leqa~~Erd~leke~r~a~~~l~~~eREn~~Lk~Ql~DLsrQV~vLL~ 524 (2058)
.+.+.+..|.-..+.+-.....+..+...+......++++|..|+.+..--.--++.||-
T Consensus 15 qAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLG 74 (79)
T COG3074 15 QAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444545555555555556666667778888888887777777777764
No 325
>KOG3172 consensus Small nuclear ribonucleoprotein Sm D3 [RNA processing and modification]
Probab=40.04 E-value=22 Score=37.18 Aligned_cols=13 Identities=62% Similarity=0.951 Sum_probs=6.1
Q ss_pred cccCCCCcCCCCcc
Q 045447 2030 VIRGRGRPAGRGRG 2043 (2058)
Q Consensus 2030 ~~~~~~~~~~~~~~ 2043 (2058)
.+|||++. +||||
T Consensus 95 ~~RG~~~~-~~grg 107 (119)
T KOG3172|consen 95 PGRGRARR-ARGRG 107 (119)
T ss_pred CCcccccc-ccCCC
Confidence 34444433 55555
No 326
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=39.50 E-value=1e+03 Score=31.41 Aligned_cols=127 Identities=13% Similarity=0.082 Sum_probs=73.7
Q ss_pred HHHHHHHHhhcCCCCHH-HHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHH
Q 045447 1334 EKRVSELLQRCRNIDVE-DYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDIS 1412 (2058)
Q Consensus 1334 kqR~q~LLeKy~riDPe-E~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~ 1412 (2058)
+.+...+=++++-+||+ +-..+-.-|.+|+.+|.++.+++..+...+....-+|..|+..+..+...+.....++..-.
T Consensus 262 r~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~ 341 (434)
T PRK15178 262 RLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKL 341 (434)
T ss_pred HHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 33344444668999997 56667777999999998888888766655555556666666666666666665555553100
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1413 --QAEAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDL 1460 (2058)
Q Consensus 1413 --~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~ 1460 (2058)
.-.+.+-.+++.+.-...=..+.+...-.-++...-|..-.++-++-+
T Consensus 342 g~~~la~~laeYe~L~le~efAe~~y~sAlaaLE~AR~EA~RQ~~YL~~i 391 (434)
T PRK15178 342 GSQGSSESLSLFEDLRLQSEIAKARWESALQTLQQGKLQALRERQYLLII 391 (434)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeee
Confidence 012445566666555554444444444444444333433333333333
No 327
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=39.38 E-value=88 Score=29.74 Aligned_cols=44 Identities=34% Similarity=0.389 Sum_probs=38.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 045447 1302 CDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCR 1345 (2058)
Q Consensus 1302 lepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~ 1345 (2058)
+..|++.+..+.+.+.....|+..++.+.+..++.+..||.=|.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE 45 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYE 45 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888999999999999999999999999999885
No 328
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=39.26 E-value=5.1e+02 Score=32.13 Aligned_cols=59 Identities=14% Similarity=0.273 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHH
Q 045447 952 EEAQANREHMLQYKSIAQVNEAALKEMETVHENFRTRVEGVKKSLEDELHSLRKRVSEL 1010 (2058)
Q Consensus 952 eeL~~Ak~qveQYK~IAqsaEeaL~~l~~~~e~yK~e~E~~l~e~e~ei~~L~~ri~eL 1010 (2058)
..|.....+++.++.-.+.++..+..+.+........++......+..+..|.+++..-
T Consensus 197 ~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e 255 (297)
T PF02841_consen 197 QQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEE 255 (297)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555556666666666666666666666666667777777776665443
No 329
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=39.04 E-value=2.4e+02 Score=37.10 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045447 1433 RRKCEMLSKEKEESIKENQSLARQLDDLK 1461 (2058)
Q Consensus 1433 k~~~e~~~~e~~e~~~e~~~l~~q~~~~k 1461 (2058)
..+.+++..+...+...++.|+.|++.+.
T Consensus 115 ~~~~~ql~~~~~~~~~~l~~l~~~l~~~~ 143 (472)
T TIGR03752 115 TKEIEQLKSERQQLQGLIDQLQRRLAGVL 143 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33444455555555666666666665544
No 330
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=38.70 E-value=4.5e+02 Score=33.44 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 045447 331 REQLEKEAMDLKEKLEKCEAEIESS 355 (2058)
Q Consensus 331 ~~~lEke~~eLkekl~~lE~Ele~~ 355 (2058)
+.-++.++.+++.++..++.+|..+
T Consensus 78 ~ema~~Ei~~~~~~~~~le~~L~~l 102 (363)
T COG0216 78 REMAEEEIKELEAKIEELEEELKIL 102 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3446678888999999999888654
No 331
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=38.69 E-value=4.5e+02 Score=26.91 Aligned_cols=66 Identities=18% Similarity=0.377 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 045447 1309 LRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETR 1377 (2058)
Q Consensus 1309 i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~ 1377 (2058)
+......+......+..|...+..+........ .+|+|.+|.....-+..|...+......+..+.
T Consensus 7 l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~ 72 (123)
T PF02050_consen 7 LAEAQQELQEAEEQLEQLQQERQEYQEQLSESQ---QGVSVAQLRNYQRYISALEQAIQQQQQELERLE 72 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT--------SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555667777778888888877766666 389999999999999888876655555554333
No 332
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=38.26 E-value=3.4e+02 Score=28.20 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=24.6
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 96 HQLHLQLIGKDGEIERLTMEVAELHKSRRQLMELVE 131 (2058)
Q Consensus 96 ~~L~~~~~~~dseverLr~ei~eLe~ekr~ll~llE 131 (2058)
..|..+..+-..++++|+.++..-..++..|+.+++
T Consensus 52 ~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll~ 87 (87)
T PF12709_consen 52 DELENENKALKRENEQLKKKLDTEREEKQELLKLLE 87 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 333444444456778888888888888888888763
No 333
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=37.28 E-value=6.2e+02 Score=33.01 Aligned_cols=75 Identities=24% Similarity=0.310 Sum_probs=36.0
Q ss_pred HHHhhhHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH----HHhhhHHHHHHHHH
Q 045447 198 EELTSKVNSLVELRRTHADLEADMSAKLSDVERQFSECSSSLNWNKERVRELEIKLSSLQE----EFCSSKDAAAANEE 272 (2058)
Q Consensus 198 ~ELk~KteEll~~Rre~~~~e~~l~aki~eLqre~~E~~ssL~~sk~rv~eLe~Kl~~lqe----~L~~~ke~~a~~ee 272 (2058)
..|..--+++..+|..+..++..+..=-..+++++.....+|+.-+-|...|+.+++.+-+ ++..+|.+.+.|++
T Consensus 212 ~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EE 290 (395)
T PF10267_consen 212 LGLQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEE 290 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444444555555555444222221111223445555555666666677777766655432 34444444444444
No 334
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=37.00 E-value=2.7e+02 Score=27.09 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=10.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhH
Q 045447 1388 SQLEQELANSRLELSEKEKRLSDI 1411 (2058)
Q Consensus 1388 ~~l~~~L~~~~~e~~~le~k~~d~ 1411 (2058)
+.+..+|..++...-.++.++.+.
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqea 37 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEA 37 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444
No 335
>PRK12704 phosphodiesterase; Provisional
Probab=36.75 E-value=1.2e+03 Score=31.43 Aligned_cols=19 Identities=26% Similarity=0.529 Sum_probs=12.1
Q ss_pred hhhhHHHHHHHHHHHhhhh
Q 045447 1580 DHASSYFSAVESFERVARS 1598 (2058)
Q Consensus 1580 ~~~~~~~~~~~~~~~~~~~ 1598 (2058)
+...+|+.-++.||+.+.+
T Consensus 436 ~~~e~~i~rl~~le~i~~~ 454 (520)
T PRK12704 436 ETLENYIKRLEKLEEIANS 454 (520)
T ss_pred ccHHHHHHHHHHHHHHHHh
Confidence 4555677777777776644
No 336
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=36.59 E-value=6.2e+02 Score=29.11 Aligned_cols=52 Identities=17% Similarity=0.227 Sum_probs=30.8
Q ss_pred HHHHHHH---HHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 440 AVLQRVL---YELEEKAGIILDERAEYERMVDAYSAINQKLQNFISEKSSLEKTI 491 (2058)
Q Consensus 440 ~~Ld~Iv---~ELEeKAP~L~eqR~EyErl~~~~~~Ls~~Leqa~~Erd~leke~ 491 (2058)
..|+.|| +-+....|.....+.|..++...+..|..++..+..|...+.+..
T Consensus 80 ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~ 134 (161)
T TIGR02894 80 LTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRL 134 (161)
T ss_pred CCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455544 444556676777777777777766666666655555555554433
No 337
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=36.51 E-value=8.5e+02 Score=29.49 Aligned_cols=61 Identities=10% Similarity=0.196 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 28 IRYLQTDFETVKARADAAAITAEQTCSL----LEQKFISLQEEFSKVESQNAQLQKSLDDRVNEL 88 (2058)
Q Consensus 28 i~~l~~el~t~KA~~e~~~i~aEQ~~~~----lEqk~~sl~~e~~~le~e~~eL~~~l~~~~~El 88 (2058)
|..++..+..+++..+..+...+..+.. .-.....+..+....+..+..|+..++.....+
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i 86 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRI 86 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666655555444443221 112233344444444444444444444333333
No 338
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=36.48 E-value=8.9e+02 Score=29.72 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcceeeccCccchhh
Q 045447 1536 SSELEQHKQAVKRLSDELEKLKHTEAGLPEGTSVVQLLSGTNLDD 1580 (2058)
Q Consensus 1536 ~~~~e~~~~~~~~l~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1580 (2058)
..+++=|++|+.-|+.=+-.++..++++|+-.. -|..|.+
T Consensus 208 ~AQleYHr~A~eiLe~l~~~i~~~~~~~~~k~~-----fg~~lee 247 (248)
T cd07619 208 EVQAEYHRKSLELLQSVLPQIKAHQEAWVEKPS-----YGKPLEE 247 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCc-----cCCCccc
Confidence 488999999999999999999999999999772 3555544
No 339
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=36.42 E-value=5e+02 Score=30.03 Aligned_cols=42 Identities=29% Similarity=0.361 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcchhHHHHh
Q 045447 1437 EMLSKEKEESIKENQSLARQLDDLKQGKKSTGDVTGEQVMKE 1478 (2058)
Q Consensus 1437 e~~~~e~~e~~~e~~~l~~q~~~~k~~~~~~~~~~~~q~~ke 1478 (2058)
+.+.++..+|.++.....+.|..+|.|..-.++..-+|+-++
T Consensus 119 eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~ 160 (201)
T KOG4603|consen 119 EEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYRE 160 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 346678888888888999999999999877776566666664
No 340
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=36.34 E-value=5.1e+02 Score=31.32 Aligned_cols=75 Identities=19% Similarity=0.265 Sum_probs=47.1
Q ss_pred HcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 045447 451 EKAGIILDERAEYERMVDAYSAINQKLQNFISEKSSLEKTIQELKADLRMRERDYYLAQKEISDLQKQVTVLLKE 525 (2058)
Q Consensus 451 eKAP~L~eqR~EyErl~~~~~~Ls~~Leqa~~Erd~leke~r~a~~~l~~~eREn~~Lk~Ql~DLsrQV~vLL~E 525 (2058)
...=.|.+++.|.+-|..+.....+.|.++..++..++..+..++...........++..++.=|-.+|-.++.+
T Consensus 29 ~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 29 NEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666666666666666777777777777777666666666655555555555555555555555554
No 341
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=36.29 E-value=4.8e+02 Score=32.32 Aligned_cols=94 Identities=17% Similarity=0.313 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHH-------HHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhH
Q 045447 1326 QRMEKENLEKRVSE-------LLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSR 1398 (2058)
Q Consensus 1326 LqeE~~RWkqR~q~-------LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~ 1398 (2058)
++.|+.-|+--+.+ |+++.+.+-| -+++|..+|..-=+++.-..+-+ ++.|...-+++..+-..|++++
T Consensus 218 ~k~DakDWR~H~~QM~s~~~nIe~~~~~~~~-~Ldklh~eit~~LEkI~SREK~l---NnqL~~l~q~fr~a~~~lse~~ 293 (384)
T KOG0972|consen 218 LKQDAKDWRLHLEQMNSMHKNIEQKVGNVGP-YLDKLHKEITKALEKIASREKSL---NNQLASLMQKFRRATDTLSELR 293 (384)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHhhcchhH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999876554 5555555544 46777777764433333333333 4555555555555555555555
Q ss_pred HHHH-------HHHHHhhhHHHHHHHHHHHHH
Q 045447 1399 LELS-------EKEKRLSDISQAEAARKLEME 1423 (2058)
Q Consensus 1399 ~e~~-------~le~k~~d~~~~~~~l~~e~e 1423 (2058)
.... ..+.-++++-.+..-+|+|++
T Consensus 294 e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemE 325 (384)
T KOG0972|consen 294 EKYKQASVGVSSRTETLDEVMDEIEQLKQEME 325 (384)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 224555566566666666666
No 342
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=36.22 E-value=9.3e+02 Score=29.88 Aligned_cols=119 Identities=16% Similarity=0.184 Sum_probs=60.8
Q ss_pred HHHHHHhhcCCCCHH-----------HHHHHHHHHHHHHH-HHhhhh----HHHHHHHhhhhhhhhHHHHHHHHHHhhHH
Q 045447 1336 RVSELLQRCRNIDVE-----------DYDRLKVEVRQMEE-KLSGKN----AEIEETRNLLSTKLDTISQLEQELANSRL 1399 (2058)
Q Consensus 1336 R~q~LLeKy~riDPe-----------E~e~Lk~Eie~Le~-~L~~~~----ae~e~~~~~l~~~~~~~~~l~~~L~~~~~ 1399 (2058)
-.+.|+.||+.|--. =++-|+.=|+.|+. .+..+. .++.++=.-++...-.+.=||..|.++..
T Consensus 101 ilq~If~KHGDIAsNc~lkS~~~RS~yLe~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~E 180 (269)
T PF05278_consen 101 ILQKIFEKHGDIASNCKLKSQQFRSYYLECLCDIIQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLRSKLEEILE 180 (269)
T ss_pred HHHHHHHhCccHhhccccCcHHHHHHHHHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHH
Confidence 457799999987552 25556666666654 222221 01111111222222223335555555332
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 045447 1400 ELSEKEKRLSDISQAEAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLKQ 1462 (2058)
Q Consensus 1400 e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k~ 1462 (2058)
...-. + .-.....+.+...+.+..++.+++....++....++...+..++.+++.
T Consensus 181 a~e~~-----~---~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~ 235 (269)
T PF05278_consen 181 AKEIY-----D---QHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKG 235 (269)
T ss_pred HHHHH-----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21110 0 0122344555556666667777777777777777777777777766664
No 343
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=36.19 E-value=1.4e+03 Score=32.08 Aligned_cols=73 Identities=14% Similarity=0.198 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHH-HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 045447 688 KMAERVRCLEDDLGK-AR-----------SEIIALRSERDKLALEAEFAREKLDSVMREAEHQKVEVNGVLARNVEFSQL 755 (2058)
Q Consensus 688 q~~e~~k~L~eql~k-~r-----------~El~~LrsE~~K~s~q~e~a~ER~e~Lq~n~e~~r~E~~sL~~rn~eLs~~ 755 (2058)
++-.++|.|+.+|.. .+ -|+.+|++=+--+..|+.-...-++.|+.-.+-+.+.+..+...|..|...
T Consensus 398 qLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~ 477 (861)
T PF15254_consen 398 QLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKM 477 (861)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 455678888888742 22 367777776665555554444455555555555555555555555555554
Q ss_pred HHHHH
Q 045447 756 VVDYQ 760 (2058)
Q Consensus 756 ~~k~e 760 (2058)
+..-|
T Consensus 478 ~~ekd 482 (861)
T PF15254_consen 478 FQEKD 482 (861)
T ss_pred HHHHH
Confidence 44333
No 344
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.96 E-value=1.7e+03 Score=32.70 Aligned_cols=40 Identities=10% Similarity=0.040 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1130 WELEKSVLEKLKNEAEEKYDEVNEQNKILHSRLEALHIQL 1169 (2058)
Q Consensus 1130 Weeqk~~Le~Ei~el~~R~eDL~~QN~LLH~QLE~lt~Qi 1169 (2058)
|...-..++.++..+...+.-+..|-.-|-.+|+.+..++
T Consensus 540 L~~~~~~l~~ql~~l~~q~~~lq~ql~ql~~ql~~l~q~w 579 (1042)
T TIGR00618 540 LETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCD 579 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555555555555555555555554444
No 345
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=35.94 E-value=1.1e+02 Score=36.88 Aligned_cols=84 Identities=25% Similarity=0.349 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHH
Q 045447 440 AVLQRVLYELEEKAGIILDERAEYERMVDAYSAINQKLQNFISEKSSLEKTIQELK--ADLRMRERDYYLAQKEISDLQK 517 (2058)
Q Consensus 440 ~~Ld~Iv~ELEeKAP~L~eqR~EyErl~~~~~~Ls~~Leqa~~Erd~leke~r~a~--~~l~~~eREn~~Lk~Ql~DLsr 517 (2058)
..++.|+.+|..- ..+..++..-+.+...|..+..+|.....+.+++..-+.++. .++-.++++....+.++.-+..
T Consensus 105 ~~~~~~l~~l~~~-g~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~ 183 (262)
T PF14257_consen 105 DKFDSFLDELSEL-GKVTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEG 183 (262)
T ss_pred HHHHHHHHHHhcc-CceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999954 477777777788889999999999999988888887666554 3344556666666666666666
Q ss_pred HHHHHHH
Q 045447 518 QVTVLLK 524 (2058)
Q Consensus 518 QV~vLL~ 524 (2058)
|.++|-.
T Consensus 184 ~~~~l~~ 190 (262)
T PF14257_consen 184 QLKYLDD 190 (262)
T ss_pred HHHHHHH
Confidence 6666644
No 346
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=35.85 E-value=9.2e+02 Score=31.51 Aligned_cols=65 Identities=17% Similarity=0.248 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045447 37 TVKARADAAAITAEQTCSLLEQKFISLQEEFSKVESQNAQLQKSLDDRVNELAEVQSQKHQLHLQ 101 (2058)
Q Consensus 37 t~KA~~e~~~i~aEQ~~~~lEqk~~sl~~e~~~le~e~~eL~~~l~~~~~Ela~~q~~~~~L~~~ 101 (2058)
+-|++.++--|+++..+.+-++++..+.++...+..+...++..+..+..+|..+|.+..+|...
T Consensus 6 s~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~ 70 (459)
T KOG0288|consen 6 SQKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEE 70 (459)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566666666667777777777777777777777776666666666666665555444
No 347
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=35.65 E-value=2.1e+02 Score=30.12 Aligned_cols=82 Identities=21% Similarity=0.241 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCCCCCchhHHHHHHHHhhhhhHHHHHHhh
Q 045447 1135 SVLEKLKNEAEEKYDEVNEQNKILHSRLEALHIQLTEKDGSSVRISSQSTDSNPIGDASLQSVISFLRNRKSIAETEVAL 1214 (2058)
Q Consensus 1135 ~~Le~Ei~el~~R~eDL~~QN~LLH~QLE~lt~Qia~~~~~~a~~ss~s~~~~s~~~e~L~eVI~yLRREKEIae~qlel 1214 (2058)
+-.++|..-+.+.+.+|..||+.|-.+|.-+....-.... .+..++|+ +.+.....|..-++-.|-+-.++--++--
T Consensus 11 qFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~-~~~~~~g~--~~~~~~~~l~~eLk~a~~qi~~Ls~kv~e 87 (96)
T PF11365_consen 11 QFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDS-LAKLSEGG--SPSGREAELQEELKLAREQINELSGKVME 87 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-cccCCCCC--CCccccHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3446777789999999999999999999999865422211 11212221 12233456777788877777776665544
Q ss_pred HHHHH
Q 045447 1215 LTTEK 1219 (2058)
Q Consensus 1215 ~~qE~ 1219 (2058)
++.||
T Consensus 88 Lq~EN 92 (96)
T PF11365_consen 88 LQYEN 92 (96)
T ss_pred Hhhcc
Confidence 44443
No 348
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=35.45 E-value=4.3e+02 Score=27.74 Aligned_cols=11 Identities=9% Similarity=0.253 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 045447 1353 DRLKVEVRQME 1363 (2058)
Q Consensus 1353 e~Lk~Eie~Le 1363 (2058)
..|..++..|.
T Consensus 9 q~l~~~~~~l~ 19 (105)
T cd00632 9 QQLQQQLQAYI 19 (105)
T ss_pred HHHHHHHHHHH
Confidence 33444443333
No 349
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=35.31 E-value=4e+02 Score=36.14 Aligned_cols=27 Identities=41% Similarity=0.546 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045447 1435 KCEMLSKEKEESIKENQSLARQLDDLK 1461 (2058)
Q Consensus 1435 ~~e~~~~e~~e~~~e~~~l~~q~~~~k 1461 (2058)
+.+.|.+++.+..+....|...+..++
T Consensus 482 ~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 482 RIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555555554
No 350
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=34.85 E-value=2.2e+02 Score=31.38 Aligned_cols=39 Identities=26% Similarity=0.272 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045447 1305 LENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQR 1343 (2058)
Q Consensus 1305 Le~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeK 1343 (2058)
|+..-.+|..+++.+..|+..++.|.|.|+.+...|..-
T Consensus 79 LE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~ 117 (135)
T KOG4196|consen 79 LEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNS 117 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556666777888889999999999999999999988763
No 351
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=34.57 E-value=5.1e+02 Score=27.52 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1415 EAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDD 1459 (2058)
Q Consensus 1415 ~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~ 1459 (2058)
...++..++.+...++.+. +++..+.+....+++++..
T Consensus 69 ~~~l~~r~e~ie~~i~~le-------k~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 69 IQELKEKKETLELRVKTLQ-------RQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433 4444444444444444443
No 352
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.41 E-value=1.5e+03 Score=31.71 Aligned_cols=93 Identities=17% Similarity=0.204 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhh--cCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 045447 1309 LRERQIEIEACKKEMEKQRMEKENLEKRVSEL--LQR--CRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKL 1384 (2058)
Q Consensus 1309 i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~L--LeK--y~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~ 1384 (2058)
++-+.+...++...|...+.++...+.|.+.+ +.+ +-.||..-..+-..++..+.++|......++-++..+..++
T Consensus 625 ~k~~~~~~~~~~~~i~~~q~e~~klqeq~~Al~~i~~~~fa~ID~~Sa~rqIael~~~lE~L~~t~~~~~~~~~~l~aaQ 704 (1104)
T COG4913 625 VKAMLSREDFYMIKIMRQQGEYIKLQEQANALAHIQALNFASIDLPSAQRQIAELQARLERLTHTQSDIAIAKAALDAAQ 704 (1104)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcchhhcchhhHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 33333344445555555555555555555443 222 34566554444444444443444444444555555566665
Q ss_pred hHHHHHHHHHHhhHHHH
Q 045447 1385 DTISQLEQELANSRLEL 1401 (2058)
Q Consensus 1385 ~~~~~l~~~L~~~~~e~ 1401 (2058)
....-|+-+....-.+.
T Consensus 705 T~~~vler~~~~~~~e~ 721 (1104)
T COG4913 705 TRQKVLERQYQQEVTEC 721 (1104)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555444444433333
No 353
>PF15294 Leu_zip: Leucine zipper
Probab=34.39 E-value=1e+03 Score=29.74 Aligned_cols=224 Identities=17% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Q 045447 24 ADAYIRYLQTDFET-----VKARADAAAITAEQTCSLLEQKFISLQEEFSKVESQNAQLQKSLDDRVNELAEVQS----Q 94 (2058)
Q Consensus 24 ~e~~i~~l~~el~t-----~KA~~e~~~i~aEQ~~~~lEqk~~sl~~e~~~le~e~~eL~~~l~~~~~Ela~~q~----~ 94 (2058)
....|.+|+..+.+ +..-+.+.....=|.|..-|+-|..+. ++..+-++.+|-.++.+--..-..... .
T Consensus 35 V~~~ldgL~~~v~~~vesEL~N~~htn~lllrql~~qAek~~lkl~--~diselEn~eLLe~i~~~E~~~~~~~~~~~~~ 112 (278)
T PF15294_consen 35 VTEMLDGLQVVVKSEVESELINTSHTNVLLLRQLFSQAEKWYLKLQ--TDISELENRELLEQIAEFEKQEFTSSFKPNQE 112 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHhhhcccCCcccc
Q ss_pred HHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---------H
Q 045447 95 KHQLHLQLIGKDGEIERLTMEVAELHKSRRQLMELVEQKDLQHSEKGATIKAYLDKIINLTDNAAQREAR---------L 165 (2058)
Q Consensus 95 ~~~L~~~~~~~dseverLr~ei~eLe~ekr~ll~llErk~~e~eel~e~l~~l~eKi~eL~~~~~~~e~r---------l 165 (2058)
....+.....-.+-+.-|..+|..|..+|..|-+-+-.-....-..-++=..+...|.+|.........+ +
T Consensus 113 ~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l 192 (278)
T PF15294_consen 113 TSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDL 192 (278)
T ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccch
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHhhhhhhhhHHH
Q 045447 166 AETEAELARAQATCTRLTQGKELIERHNAWLNEELTSKVNSLVELRRTHADLEADMSAKLSDVERQFSECSSSLNWNKER 245 (2058)
Q Consensus 166 ~e~es~~~s~k~~e~RLeQE~eLLqknneWLe~ELk~KteEll~~Rre~~~~e~~l~aki~eLqre~~E~~ssL~~sk~r 245 (2058)
..++.+.+..+ .-++.=..-...++.-|.+.|..--.+++..+.....-+..+..++.+ -..+.-...-|......
T Consensus 193 ~dLE~k~a~lK---~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfqq-T~ay~NMk~~ltkKn~Q 268 (278)
T PF15294_consen 193 SDLENKMAALK---SELEKALQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQQ-TAAYRNMKEILTKKNEQ 268 (278)
T ss_pred hhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhCc-cHHHHHhHHHHHhccHH
Q ss_pred HHHHHHHH
Q 045447 246 VRELEIKL 253 (2058)
Q Consensus 246 v~eLe~Kl 253 (2058)
+.+|..+|
T Consensus 269 iKeLRkrl 276 (278)
T PF15294_consen 269 IKELRKRL 276 (278)
T ss_pred HHHHHHHh
No 354
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=34.18 E-value=6.7e+02 Score=27.61 Aligned_cols=85 Identities=5% Similarity=0.078 Sum_probs=52.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q 045447 1302 CDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLS 1381 (2058)
Q Consensus 1302 lepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~ 1381 (2058)
.+.....+......+......+..|..-+..+..+..... -..|+|.+|.....=|..|...+......+..+...+.
T Consensus 18 ee~a~~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~--~~g~~~~~l~~~~~fi~~L~~~I~~q~~~v~~~~~~ve 95 (147)
T PRK05689 18 EEQAALQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRG--SAGMTSSWWINYQQFLQQLEKAITQQRQQLTQWTQKVD 95 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555566666667777777777766666655543 35899999888888788777655555555544444444
Q ss_pred hhhhHHH
Q 045447 1382 TKLDTIS 1388 (2058)
Q Consensus 1382 ~~~~~~~ 1388 (2058)
..+..|.
T Consensus 96 ~~r~~~~ 102 (147)
T PRK05689 96 NARKYWQ 102 (147)
T ss_pred HHHHHHH
Confidence 4433333
No 355
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=33.98 E-value=8.4e+02 Score=29.04 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 17 AAAVAAKADAYIRYLQTDFETVKARADAAAITAEQTCSLLEQKFISLQEEFSKVESQNAQL 77 (2058)
Q Consensus 17 ~~~i~~K~e~~i~~l~~el~t~KA~~e~~~i~aEQ~~~~lEqk~~sl~~e~~~le~e~~eL 77 (2058)
..+|...++++|..|+.||+.-.-. ..+-.++|++.....+|..|-....+.+....=.
T Consensus 87 I~~vE~Va~ALF~EWe~EL~~Y~~~--sLR~~S~~kL~~tr~~Y~~L~~aM~~Ae~km~PV 145 (201)
T PF11172_consen 87 IDAVEDVADALFDEWEQELDQYSNA--SLRRASEQKLAETRRRYAQLIKAMRRAESKMQPV 145 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 3466777788888888877765433 4555677777777777777766666666555443
No 356
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=33.84 E-value=2e+02 Score=31.11 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhh
Q 045447 1332 NLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGK 1369 (2058)
Q Consensus 1332 RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~ 1369 (2058)
.+..|++++|.+++=+..+|+..|...|..|+..+..+
T Consensus 78 ~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l 115 (118)
T TIGR01837 78 AFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEEL 115 (118)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999998766554
No 357
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=33.27 E-value=3.3e+02 Score=27.65 Aligned_cols=63 Identities=19% Similarity=0.459 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 108 EIERLTMEVAELHKSRRQLMELVEQKDLQHSEKGA--------TIKAYLDKIINLTDNAAQREARLAETEA 170 (2058)
Q Consensus 108 everLr~ei~eLe~ekr~ll~llErk~~e~eel~e--------~l~~l~eKi~eL~~~~~~~e~rl~e~es 170 (2058)
.++++...+.+|..+-..|...|++-..++.++.+ ++..|..|+..+......+..+++.++-
T Consensus 15 ~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~ 85 (92)
T PF14712_consen 15 DLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKK 85 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666655554 1234888888887777766666655543
No 358
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=33.27 E-value=3.8e+02 Score=34.82 Aligned_cols=68 Identities=13% Similarity=0.263 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 045447 458 DERAEYERMVDAYS-AINQKLQNFISEKSSLEKTIQELKADLRMRERDYYLAQKEISDLQKQVTVLLKE 525 (2058)
Q Consensus 458 eqR~EyErl~~~~~-~Ls~~Leqa~~Erd~leke~r~a~~~l~~~eREn~~Lk~Ql~DLsrQV~vLL~E 525 (2058)
.+...|++|...+- .+.-.++.+..|+.+.++--..++.-..-++.|+..|++++.++.--|.|+..|
T Consensus 230 ~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~e 298 (395)
T PF10267_consen 230 RLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYE 298 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33344444444222 233334445566666655555556666778899999999999999999998775
No 359
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=33.15 E-value=8.5e+02 Score=28.51 Aligned_cols=36 Identities=31% Similarity=0.446 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 045447 1432 LRRKCEMLSKEKEESIKENQSLARQLDDLKQGKKST 1467 (2058)
Q Consensus 1432 ~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k~~~~~~ 1467 (2058)
.+.+++.+.+++..+...+..++..++.++.|...+
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~ 102 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES 102 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 345566666777777788888888888887766443
No 360
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=33.14 E-value=2.8e+02 Score=33.05 Aligned_cols=59 Identities=15% Similarity=0.311 Sum_probs=29.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 452 KAGIILDERAEYERMVDAYSAINQKLQNFISEKSSLEKTIQELKADLRMRERDYYLAQK 510 (2058)
Q Consensus 452 KAP~L~eqR~EyErl~~~~~~Ls~~Leqa~~Erd~leke~r~a~~~l~~~eREn~~Lk~ 510 (2058)
+.|.+...+..|+.+.....++...-+.++.+...++.++...+-.+++++-||.+|.-
T Consensus 126 ~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE 184 (290)
T COG4026 126 RVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEE 184 (290)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666665555444443333444444444444444444444444444444443
No 361
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=33.02 E-value=3.4e+02 Score=36.29 Aligned_cols=57 Identities=14% Similarity=0.107 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------CCCCHHHHHHHHHH
Q 045447 1302 CDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRC------RNIDVEDYDRLKVE 1358 (2058)
Q Consensus 1302 lepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy------~riDPeE~e~Lk~E 1358 (2058)
+..|+.+|+.++.++..+..++..++....-|..-........ +..|+++|..+-.-
T Consensus 73 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (525)
T TIGR02231 73 LAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDF 135 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHH
Confidence 4445555555555555555555555555555544333222111 24566665554433
No 362
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=32.84 E-value=1.7e+03 Score=31.97 Aligned_cols=44 Identities=30% Similarity=0.401 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Q 045447 269 ANEERFSTELSTVNKLVELYKESSEEWSRKAGELEGVIKALETQLAQ 315 (2058)
Q Consensus 269 ~~ee~fr~EL~aq~RLaeLyke~aee~~~k~~ELe~~ikeLe~~L~q 315 (2058)
..-...++||..-.+ +.....++..+|.+.|+..++.|+.++..
T Consensus 523 ~E~~~l~~el~~~~~---~~~kl~eer~qklk~le~q~s~lkk~l~~ 566 (913)
T KOG0244|consen 523 SERSRLRNELNVFNR---LAAKLGEERVQKLKSLETQISLLKKKLSS 566 (913)
T ss_pred cccHHHHHHHHhhhH---HHHHhhhHHHHHHHHHHHHHHHHHHhhHH
Confidence 345678889888877 55566788899999999999999998875
No 363
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=32.61 E-value=5.8e+02 Score=28.36 Aligned_cols=39 Identities=26% Similarity=0.247 Sum_probs=31.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1402 SEKEKRLSDISQAEAARKLEMEKQKRISAQLRRKCEMLS 1440 (2058)
Q Consensus 1402 ~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~~ 1440 (2058)
.+||++...+.+++..|+.++..+..++..|+.+|+.+.
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777778888888888888888888888888888654
No 364
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=32.42 E-value=7.8e+02 Score=28.82 Aligned_cols=93 Identities=20% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Q 045447 961 MLQYKSIAQVNEAALKEMETVHENFRTRVEGVKKSLEDELHSLRKRVSELERENILKSEEIASAAGVREDALASAREEIT 1040 (2058)
Q Consensus 961 veQYK~IAqsaEeaL~~l~~~~e~yK~e~E~~l~e~e~ei~~L~~ri~eLe~El~~~~eE~~~~~~~~e~ql~~l~~El~ 1040 (2058)
+..|..+..++=.--..-.-..++-+.+++..+..++.++..|+.++.++...+...............+. ...|+.
T Consensus 97 l~~y~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~---~~~ei~ 173 (189)
T PF10211_consen 97 LDAYQTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKK---HQEEID 173 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q 045447 1041 SLKEERSIKISQIVNL 1056 (2058)
Q Consensus 1041 ~Lk~E~~~~~~~~~~~ 1056 (2058)
-|+.........+..+
T Consensus 174 ~lk~~~~ql~~~l~~~ 189 (189)
T PF10211_consen 174 FLKKQNQQLKAQLEQI 189 (189)
T ss_pred HHHHHHHHHHHHHhcC
No 365
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=32.40 E-value=6.6e+02 Score=28.27 Aligned_cols=66 Identities=18% Similarity=0.229 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 045447 463 YERMVDAYSAINQKLQNFISEKSSLEKTIQELKADLRMRERDYYLAQKEISDLQKQVTVLLKECRD 528 (2058)
Q Consensus 463 yErl~~~~~~Ls~~Leqa~~Erd~leke~r~a~~~l~~~eREn~~Lk~Ql~DLsrQV~vLL~Ev~~ 528 (2058)
|+.+......+..+|.....-.+-++.++++....+.........|+..+..+.+++..+...++.
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~ 87 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHP 87 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 566666666666666655555566666666655555555555555666666666666655555443
No 366
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=32.17 E-value=5.3e+02 Score=30.97 Aligned_cols=37 Identities=11% Similarity=0.030 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 045447 115 EVAELHKSRRQLMELVEQKDLQHSEKGATIKAYLDKI 151 (2058)
Q Consensus 115 ei~eLe~ekr~ll~llErk~~e~eel~e~l~~l~eKi 151 (2058)
+++.+++.+..+..-.+..+.|+++|.++.+.+.++|
T Consensus 173 ~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 173 KLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3344444444455555666677777777777766654
No 367
>PRK14158 heat shock protein GrpE; Provisional
Probab=31.81 E-value=5.9e+02 Score=30.12 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHhhhhhhhhcCCC
Q 045447 1582 ASSYFSAVESFERVARSVIVELGTC 1606 (2058)
Q Consensus 1582 ~~~~~~~~~~~~~~~~~~~~~~~~~ 1606 (2058)
..+|+..|+.+.+.-.++|...|..
T Consensus 115 ~~~i~~Gv~mi~k~l~~vLek~Gv~ 139 (194)
T PRK14158 115 MSAIIEGIRMTLSMLLSTLKKFGVT 139 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 4779999999999999999999995
No 368
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=31.72 E-value=9.1e+02 Score=28.42 Aligned_cols=14 Identities=14% Similarity=0.449 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 045447 1350 EDYDRLKVEVRQME 1363 (2058)
Q Consensus 1350 eE~e~Lk~Eie~Le 1363 (2058)
..+..+...+..|+
T Consensus 69 ~~f~~~~~tl~~LE 82 (190)
T PF05266_consen 69 SSFESLMKTLSELE 82 (190)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444444
No 369
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=31.69 E-value=3.8e+02 Score=27.12 Aligned_cols=46 Identities=22% Similarity=0.351 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 045447 1332 NLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETR 1377 (2058)
Q Consensus 1332 RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~ 1377 (2058)
..+.+++..|.|.+=|.-+||+.++.-+..+.+++..+.+.++.++
T Consensus 32 ~~r~~l~~~l~kldlVtREEFd~q~~~L~~~r~kl~~LEarl~~LE 77 (79)
T PF04380_consen 32 NIRARLQSALSKLDLVTREEFDAQKAVLARTREKLEALEARLAALE 77 (79)
T ss_pred HHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6789999999999999999999999999988887777777765443
No 370
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=31.56 E-value=3.8e+02 Score=36.38 Aligned_cols=46 Identities=13% Similarity=0.287 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHH
Q 045447 1327 RMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEI 1373 (2058)
Q Consensus 1327 qeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~ 1373 (2058)
+.+..-.++|+..|-.+ +=-+|.++.+.++++..|+.+.+...+.+
T Consensus 190 ~~~~~~yk~~v~~i~~~-~ik~p~~i~~~~~e~d~lk~e~~~~~~~i 235 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKK-DIKNPLELQKIKEEFDKLKKEGKADKQKI 235 (555)
T ss_pred chhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566666666553 23467777777777777765554444333
No 371
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=31.24 E-value=6.4e+02 Score=26.46 Aligned_cols=81 Identities=16% Similarity=0.253 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 267 AAANEERFSTELSTVNKLVELYKESSEEWSRKAGELEGVIKALETQLAQVQNDCKEKLEKEVSAREQLEKEAMDLKEKLE 346 (2058)
Q Consensus 267 ~a~~ee~fr~EL~aq~RLaeLyke~aee~~~k~~ELe~~ikeLe~~L~q~e~~~~e~LEkE~~~~~~lEke~~eLkekl~ 346 (2058)
+.....-+..||.+..-...|+.........|..++...+..|...++.+...|. .+........+.+..+..|...+.
T Consensus 5 f~~~~~~v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~-~l~~~l~~Id~Ie~~V~~LE~~v~ 83 (99)
T PF10046_consen 5 FSKVSKYVESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYE-ELQPYLQQIDQIEEQVTELEQTVY 83 (99)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556678899999999999999999999999999999999988888776554 344444444455555555555444
Q ss_pred HH
Q 045447 347 KC 348 (2058)
Q Consensus 347 ~l 348 (2058)
.|
T Consensus 84 ~L 85 (99)
T PF10046_consen 84 EL 85 (99)
T ss_pred HH
Confidence 43
No 372
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=31.21 E-value=9.2e+02 Score=30.52 Aligned_cols=41 Identities=24% Similarity=0.278 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 777 SRKLAMEVSVLKHEKEMLSNAEQRAYDEVRSLSQRVYRLQA 817 (2058)
Q Consensus 777 ~~~L~~E~~nLKaEK~Llk~~E~RL~~EnesL~~e~~rLqs 817 (2058)
+.-+-.+...|++|..-.....+-|+.|+++|..-+.-|.+
T Consensus 247 i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA 287 (561)
T KOG1103|consen 247 IEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEA 287 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33444555566666665556666666666666555544443
No 373
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=31.17 E-value=1.4e+03 Score=30.29 Aligned_cols=81 Identities=16% Similarity=0.142 Sum_probs=46.5
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHH-HHHHHHhhHHHHHHHHHHhhhHHHHHHHHHH
Q 045447 1342 QRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQ-LEQELANSRLELSEKEKRLSDISQAEAARKL 1420 (2058)
Q Consensus 1342 eKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~-l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~ 1420 (2058)
.+-=|+.|-.++.+..+|..+...|......+. ...-.|++ .+.+|..+-.|..-|.-+ .++ ..-|+.
T Consensus 238 ~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~-------~~kp~WkKiWE~EL~~V~eEQqfL~~Q-edL---~~DL~e 306 (424)
T PF03915_consen 238 QRGVRPSPKQLETVAKDISRASKELKKMKEYIK-------TEKPIWKKIWESELQKVCEEQQFLKLQ-EDL---LSDLKE 306 (424)
T ss_dssp HH-----HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HHHHHH
T ss_pred HcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HHHHHH
Confidence 444589999999999999999887777666664 44444544 456777766666544332 222 333455
Q ss_pred HHHHHHHHHHHHH
Q 045447 1421 EMEKQKRISAQLR 1433 (2058)
Q Consensus 1421 e~e~~~~~~~~~k 1433 (2058)
.++++..-..+++
T Consensus 307 Dl~k~~etf~lve 319 (424)
T PF03915_consen 307 DLKKASETFALVE 319 (424)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555554
No 374
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=31.08 E-value=5.3e+02 Score=30.97 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=16.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 045447 1277 LREENKYNFEECQKLREVAQKTKSDCDNLENLLRERQIEIEACKKE 1322 (2058)
Q Consensus 1277 LReE~~~~~~k~qkL~e~lqk~~~elepLe~~i~el~~elE~~~~E 1322 (2058)
|-+|++...++..+++.++++...+++.+++..-.+..+.+.+..|
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~E 194 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDE 194 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 3334443333333343333333333333333333333333333333
No 375
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=30.88 E-value=2.3e+02 Score=35.94 Aligned_cols=18 Identities=0% Similarity=0.143 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhhcCCCCH
Q 045447 1332 NLEKRVSELLQRCRNIDV 1349 (2058)
Q Consensus 1332 RWkqR~q~LLeKy~riDP 1349 (2058)
.|=.=+-..-.=|..|-|
T Consensus 201 ~WV~A~~~Y~~v~~~V~P 218 (344)
T PF12777_consen 201 KWVRAMVKYYEVNKEVEP 218 (344)
T ss_dssp HHHHHHHHHHHHCCCCCH
T ss_pred HHHHHHHHHHHHHHHHhH
Confidence 676555555555677888
No 376
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=30.78 E-value=1.5e+03 Score=30.66 Aligned_cols=46 Identities=17% Similarity=0.121 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHcccc
Q 045447 410 DGWSLAKIYAKYQEAVDALRHEQLGRKESEAVLQRVLYELEEKAGI 455 (2058)
Q Consensus 410 sG~SLTqlYt~Yve~k~qL~~Er~en~rLq~~Ld~Iv~ELEeKAP~ 455 (2058)
+=.|..+||..|..+...++.--.--..=.-.+..++.-|-.+..+
T Consensus 464 Gv~s~~~L~~rf~~v~~~~r~~~l~~~~~~g~~~~~~s~~~S~l~~ 509 (582)
T PF09731_consen 464 GVPSEAQLRNRFERVAPEVRRASLVPPEGAGLLGHLLSYLFSLLLF 509 (582)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHheeee
Confidence 4478999999999888877652111000011356666666654443
No 377
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=30.54 E-value=7.8e+02 Score=27.25 Aligned_cols=110 Identities=15% Similarity=0.174 Sum_probs=78.0
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045447 103 IGKDGEIERLTMEVAELHKSRRQLMELVEQKDLQHSEKGATIKAYLDKIINLTDNAAQREARLAETEAELARAQATCTRL 182 (2058)
Q Consensus 103 ~~~dseverLr~ei~eLe~ekr~ll~llErk~~e~eel~e~l~~l~eKi~eL~~~~~~~e~rl~e~es~~~s~k~~e~RL 182 (2058)
+..-..+..+...+..+-.+++.|..-.-.+...++++...+......+..|...-..+..+++.+ +.-.+-.+-..+|
T Consensus 23 v~~l~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l-~~~~s~~~l~~~L 101 (150)
T PF07200_consen 23 VKSLPQVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL-SSNYSPDALLARL 101 (150)
T ss_dssp GGGGS--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCHHHHHHHH
Confidence 344456788888999999999999988878889999999999999999888888888888888777 3334555666777
Q ss_pred HHHHHHHHHHHHhH-------HHHHhhhHHHHHHHHHh
Q 045447 183 TQGKELIERHNAWL-------NEELTSKVNSLVELRRT 213 (2058)
Q Consensus 183 eQE~eLLqknneWL-------e~ELk~KteEll~~Rre 213 (2058)
.....-+....+++ +-++..=..+|...|+.
T Consensus 102 ~~~~~e~eeeSe~lae~fl~g~~d~~~Fl~~f~~~R~~ 139 (150)
T PF07200_consen 102 QAAASEAEEESEELAEEFLDGEIDVDDFLKQFKEKRKL 139 (150)
T ss_dssp HHHHHHHHHHHHHHC-S-SSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 77777777777777 44444555555555554
No 378
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=30.53 E-value=1e+03 Score=28.68 Aligned_cols=57 Identities=23% Similarity=0.286 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh
Q 045447 1225 QLESALKAAENAQASLTTERANSRAMLLTEEEIKSLKLQVRELNLLRESNVQLREENKY 1283 (2058)
Q Consensus 1225 Qle~~qkqLdEar~~L~~Ere~s~t~~~s~e~hkeLmeKleqLNlLRESN~tLReE~~~ 1283 (2058)
.|.+....+......|..+...-+ ..-......|-+.|.-|.-.-+..+.-|.|...
T Consensus 6 KL~~i~e~~~~f~~~le~e~~~Rr--~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~ 62 (247)
T PF06705_consen 6 KLASINERFSGFESDLENEKRQRR--EQEEQRFQDIKEQIQKLEKALEAEVKRRVESNK 62 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555444445544432222 224566777777888888888888888887654
No 379
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=30.18 E-value=6.1e+02 Score=25.92 Aligned_cols=18 Identities=33% Similarity=0.613 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045447 997 EDELHSLRKRVSELEREN 1014 (2058)
Q Consensus 997 e~ei~~L~~ri~eLe~El 1014 (2058)
-.++..++..|.+|+..-
T Consensus 38 i~Em~~ir~~v~eLE~~h 55 (79)
T PF08581_consen 38 IQEMQQIRQKVYELEQAH 55 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555556666555543
No 380
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=30.06 E-value=9e+02 Score=27.81 Aligned_cols=71 Identities=18% Similarity=0.285 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 045447 86 NELAEVQSQKHQLHLQLIGKDGEIERLTMEVAELHKSRRQLMELVEQKDLQHSEKGATIKAYLDKIINLTD 156 (2058)
Q Consensus 86 ~Ela~~q~~~~~L~~~~~~~dseverLr~ei~eLe~ekr~ll~llErk~~e~eel~e~l~~l~eKi~eL~~ 156 (2058)
.++..+..+.+.++..+.-.-..-..|+.+.+.|+..-+.+..+|++=..-+....=.+.=+.--+..+..
T Consensus 77 ~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~ 147 (159)
T PF05384_consen 77 EDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSE 147 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34556667777888777667778889999999999999999999987766555555444444444444433
No 381
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=30.06 E-value=1.5e+03 Score=30.51 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=8.4
Q ss_pred HHHHHhHHHHHHhHHHHHHHH
Q 045447 983 ENFRTRVEGVKKSLEDELHSL 1003 (2058)
Q Consensus 983 e~yK~e~E~~l~e~e~ei~~L 1003 (2058)
..+|.+++..+...+.++...
T Consensus 61 ~~~R~Ele~el~~~e~rL~qr 81 (514)
T TIGR03319 61 HKLRAELERELKERRNELQRL 81 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433333333333
No 382
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=29.98 E-value=1.2e+03 Score=30.08 Aligned_cols=15 Identities=13% Similarity=0.275 Sum_probs=6.1
Q ss_pred HHHhhHHHHHHHHHH
Q 045447 1084 QVILQSETIQELTKT 1098 (2058)
Q Consensus 1084 ElvLHAe~IqeL~k~ 1098 (2058)
|++.+-.++.+|..+
T Consensus 135 e~a~~L~av~~L~~~ 149 (383)
T PF04100_consen 135 EIASLLQAVKELLEH 149 (383)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344443444444433
No 383
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=29.91 E-value=1.7e+02 Score=26.71 Aligned_cols=32 Identities=22% Similarity=0.465 Sum_probs=16.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 50 EQTCSLLEQKFISLQEEFSKVESQNAQLQKSL 81 (2058)
Q Consensus 50 EQ~~~~lEqk~~sl~~e~~~le~e~~eL~~~l 81 (2058)
|..|..+-..|.+|+.+++.|..++..|+..+
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev 35 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEV 35 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555566655555444
No 384
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=29.85 E-value=1.1e+03 Score=28.76 Aligned_cols=122 Identities=17% Similarity=0.202 Sum_probs=64.7
Q ss_pred HHhHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHhhhhhhhh---------HHHHHHHH
Q 045447 180 TRLTQGKELIERHNAWLNEELTSKVNSLVELRRTHADLEADMSAKLSDVERQFSECSSSLNWN---------KERVRELE 250 (2058)
Q Consensus 180 ~RLeQE~eLLqknneWLe~ELk~KteEll~~Rre~~~~e~~l~aki~eLqre~~E~~ssL~~s---------k~rv~eLe 250 (2058)
.++.++...-++=+.=|..=|..-..++++.||.....-. .++-+++.+... ..++..|.
T Consensus 96 ~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~~RL-----------d~D~~k~r~~ka~k~~~~~~~~~K~~~l~ 164 (244)
T cd07595 96 ELVDHEMNVEEDVLSPLQNILEVEIPNIQKQKKRLSKLVL-----------DMDSARSRYNAAHKSSGGQGAAAKVDALK 164 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-----------HHHHHHHHHHhccccccccccccccchHH
Confidence 4566666666666666677776666788888887322111 222222222111 11222333
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHH
Q 045447 251 IKLSSLQEEFCSSKDAAAANEERF-STELSTVNKLVELYKESSEEWSRKAGELEGVIKALETQ 312 (2058)
Q Consensus 251 ~Kl~~lqe~L~~~ke~~a~~ee~f-r~EL~aq~RLaeLyke~aee~~~k~~ELe~~ikeLe~~ 312 (2058)
..+.....++-+.+|.+....-.| .+|.+-..-|++|.+-+.+=|++=+..|+..+..|+..
T Consensus 165 eE~e~ae~k~e~~~e~~~~~M~~~l~~E~e~~~~l~~lv~aQl~YH~~a~e~L~~l~~~l~~~ 227 (244)
T cd07595 165 DEYEEAELKLEQCRDALATDMYEFLAKEAEIASYLIDLIEAQREYHRTALSVLEAVLPELQEQ 227 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444554444433334 46688888888888776666666555555444444433
No 385
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=29.80 E-value=1.7e+02 Score=27.11 Aligned_cols=46 Identities=15% Similarity=0.204 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHcccchHH
Q 045447 413 SLAKIYAKYQEAVDALRHEQLGRKESEAVLQRVLYELEEKAGIILD 458 (2058)
Q Consensus 413 SLTqlYt~Yve~k~qL~~Er~en~rLq~~Ld~Iv~ELEeKAP~L~e 458 (2058)
|-.+|.....+.+..+..-..+-+.|+.|||.++.-|-+..|-|-+
T Consensus 1 s~eeL~~~l~~~e~~~~~k~~~v~eLe~YiD~LL~rVmE~~P~ILe 46 (48)
T PF09457_consen 1 SREELISLLKKQEEENARKDSRVRELEDYIDNLLVRVMEQTPSILE 46 (48)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-GGGGB
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhc
Confidence 3456777777777777777777777999999999999999998854
No 386
>PRK09343 prefoldin subunit beta; Provisional
Probab=29.76 E-value=7.6e+02 Score=26.87 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 944 KEELEKLKEEAQANREHMLQYKSIAQVNEAALKEM 978 (2058)
Q Consensus 944 k~ELe~lkeeL~~Ak~qveQYK~IAqsaEeaL~~l 978 (2058)
-..+..+..++.....+..++..--.-++-.+.+|
T Consensus 13 ~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL 47 (121)
T PRK09343 13 LAQLQQLQQQLERLLQQKSQIDLELREINKALEEL 47 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444333333333333
No 387
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=29.71 E-value=1.4e+03 Score=30.09 Aligned_cols=151 Identities=17% Similarity=0.237 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 973 AALKEMETVHENFRTRVEGVKKSLEDELHSLRKRVSELERENILKSEEIASAAGVREDALASAREEITSLKEERSIKISQ 1052 (2058)
Q Consensus 973 eaL~~l~~~~e~yK~e~E~~l~e~e~ei~~L~~ri~eLe~El~~~~eE~~~~~~~~e~ql~~l~~El~~Lk~E~~~~~~~ 1052 (2058)
-.|.-|.+.|..|..++...+..+..++..++.--.+.. ....+ ......-..|..+.......
T Consensus 158 reLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~s~~~~----------~~~~R------~~~~~~k~~L~~~sd~Ll~k 221 (424)
T PF03915_consen 158 RELAVLRQLYSEFQSEVKESISSIREKIKKVKSASTNAS----------GDSNR------AYMESGKKKLSEESDRLLTK 221 (424)
T ss_dssp ----------------------------------------------------HH------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----------ccchh------HHHHHHHHHHHHHHHHHHHH
Confidence 344455556666776666666655555554433111111 00011 11222233444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 045447 1053 IVNLEVQVSALKEDLEKEHERRQAAQANYERQVILQSETIQELTKTSQALASLQEQASELRKLADALKAENSELKSKWEL 1132 (2058)
Q Consensus 1053 ~~~~E~q~~~l~~DL~~Q~~~a~eAQ~nYErElvLHAe~IqeL~k~~e~~~~lq~e~~elr~~aesak~~L~e~e~SWee 1132 (2058)
+.+++.-+..|+.|+- +...- =...++..+..++..+.......+.-+...+-.|.
T Consensus 222 VdDLQD~VE~LRkDV~---------~RgvR--------------p~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~Wk- 277 (424)
T PF03915_consen 222 VDDLQDLVEDLRKDVV---------QRGVR--------------PSPKQLETVAKDISRASKELKKMKEYIKTEKPIWK- 277 (424)
T ss_dssp HHHHHHHHHHHHHHHH---------HH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHH---------HcCCc--------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH-
Confidence 6666555666666633 11111 11122333444455555555555555566666776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1133 EKSVLEKLKNEAEEKYDEVNEQNKILHSRLEAL 1165 (2058)
Q Consensus 1133 qk~~Le~Ei~el~~R~eDL~~QN~LLH~QLE~l 1165 (2058)
...+.|+...-.--+-|+.|..|+.+=.+.+
T Consensus 278 --KiWE~EL~~V~eEQqfL~~QedL~~DL~eDl 308 (424)
T PF03915_consen 278 --KIWESELQKVCEEQQFLKLQEDLLSDLKEDL 308 (424)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777666777777777766654443
No 388
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=29.53 E-value=3.8e+02 Score=26.49 Aligned_cols=50 Identities=24% Similarity=0.331 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 687 EKMAERVRCLEDDLGKARSEIIALRSERDKLALEAEFAREKLDSVMREAE 736 (2058)
Q Consensus 687 ~q~~e~~k~L~eql~k~r~El~~LrsE~~K~s~q~e~a~ER~e~Lq~n~e 736 (2058)
.++......|..++..++.++..+.++++.+....+.|+.|.+.+...+-
T Consensus 10 e~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk 59 (65)
T TIGR02449 10 EHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLK 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455566788888888888888888888888888888888887665543
No 389
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=29.18 E-value=4e+02 Score=34.10 Aligned_cols=113 Identities=18% Similarity=0.195 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHc-------------c---cchH--HHHHHH-HH-------HHHHH
Q 045447 417 IYAKYQEAVDALRHEQLGRKESEAVLQRVLYELEEK-------------A---GIIL--DERAEY-ER-------MVDAY 470 (2058)
Q Consensus 417 lYt~Yve~k~qL~~Er~en~rLq~~Ld~Iv~ELEeK-------------A---P~L~--eqR~Ey-Er-------l~~~~ 470 (2058)
+|.....+++.....|..-+.+..+|..++.|..+= - |++. +.-... +. ....+
T Consensus 10 ~~~~~~~~k~~t~e~k~~vD~~~LqLqNl~YE~~hL~kEI~~C~~F~s~~~~i~Lv~~eEF~~~ap~~~~~~~~~~~~~H 89 (355)
T PF09766_consen 10 AQFRIKKAKDETAEAKQEVDALHLQLQNLLYEKSHLQKEIKKCLDFKSKYEDIELVPVEEFYAKAPEEISDPELTEDDEH 89 (355)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCCCcCccHHHHHHhChhhccccccCCCChH
Confidence 355666677778888888888888887777766552 2 2221 111111 11 24567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 045447 471 SAINQKLQNFISEKSSLEKTIQELKADLRMRERDYYLAQKEISDLQKQVTVLLKECRDI 529 (2058)
Q Consensus 471 ~~Ls~~Leqa~~Erd~leke~r~a~~~l~~~eREn~~Lk~Ql~DLsrQV~vLL~Ev~~~ 529 (2058)
..|..+|+-=+.+|..+.+...++......+..+|...+.-+..|..++..|+.-+.-+
T Consensus 90 ~lml~RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~pl 148 (355)
T PF09766_consen 90 QLMLARLEFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPL 148 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999998866543
No 390
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=28.32 E-value=5.9e+02 Score=32.29 Aligned_cols=87 Identities=13% Similarity=0.210 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 045447 412 WSLAKIYAKYQEAVDALRHEQLGRKESEAVLQRVLYELEEKAGIILDERAEYERMVDAYSAINQKLQNFISEKSSL---- 487 (2058)
Q Consensus 412 ~SLTqlYt~Yve~k~qL~~Er~en~rLq~~Ld~Iv~ELEeKAP~L~eqR~EyErl~~~~~~Ls~~Leqa~~Erd~l---- 487 (2058)
-|+.++|..++++.+..-.+--....-. .=|-++.++...|...++..+.+.-..
T Consensus 228 ~s~re~~d~W~~~ae~~~~e~~~S~efa---------------------k~~G~lvna~m~lr~~~qe~~e~~L~~LnlP 286 (320)
T TIGR01834 228 KTAKALYDLWVIAAEEAYAEVFASEENA---------------------KVHGKFINALMRLRIQQQEIVEALLKMLNLP 286 (320)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4678889888877765544322222221 223455566666666666665554332
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045447 488 -EKTIQELKADLRMRERDYYLAQKEISDLQKQV 519 (2058)
Q Consensus 488 -eke~r~a~~~l~~~eREn~~Lk~Ql~DLsrQV 519 (2058)
+.+++++...+..++|++..|++++.+|..+|
T Consensus 287 TRsElDe~~krL~ELrR~vr~L~k~l~~l~~~~ 319 (320)
T TIGR01834 287 TRSELDEAHQRIQQLRREVKSLKKRLGDLEANP 319 (320)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 56777777777788888888888888887654
No 391
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=28.26 E-value=1.1e+03 Score=28.13 Aligned_cols=83 Identities=20% Similarity=0.263 Sum_probs=57.7
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHhHHHHHHHHHHHH
Q 045447 938 VQLQVGKEELEKLKEEAQANREH--------MLQYKSIAQVNEAALKEMETVHENFRTRVEG--VKKSLEDELHSLRKRV 1007 (2058)
Q Consensus 938 ~eL~~lk~ELe~lkeeL~~Ak~q--------veQYK~IAqsaEeaL~~l~~~~e~yK~e~E~--~l~e~e~ei~~L~~ri 1007 (2058)
.+|..-.+.|..|..+|..-.++ -..|.+|=+..=..|+.....|+.|=.=..+ .++....+...|+.+|
T Consensus 12 d~l~~Nnr~L~~L~~dl~~~~~~~~~~e~~~~~KY~~lR~ElI~ELkqsKklydnYYkL~~KY~~LK~~~~~~~~l~~~i 91 (196)
T PF15272_consen 12 DQLDQNNRALSDLNQDLRERDERYELQETSYKEKYQQLRQELINELKQSKKLYDNYYKLYSKYQELKKSSKQSEDLQSRI 91 (196)
T ss_pred HHHHHhHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHH
Confidence 34555666777777777777777 5678888877778888888888887655544 2455566777888888
Q ss_pred HHHHHHHHHhHHH
Q 045447 1008 SELERENILKSEE 1020 (2058)
Q Consensus 1008 ~eLe~El~~~~eE 1020 (2058)
..|+.++.....+
T Consensus 92 ~~le~~lvd~~~~ 104 (196)
T PF15272_consen 92 SNLEKQLVDQMIE 104 (196)
T ss_pred HHHHHHHHHHHHH
Confidence 8888777443333
No 392
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=28.21 E-value=1.6e+03 Score=30.30 Aligned_cols=11 Identities=45% Similarity=0.631 Sum_probs=8.2
Q ss_pred HHHHHHHhhhh
Q 045447 1549 LSDELEKLKHT 1559 (2058)
Q Consensus 1549 l~~el~~~~~~ 1559 (2058)
+..||..|+.+
T Consensus 432 ~~~el~~l~~~ 442 (582)
T PF09731_consen 432 FEDELRALKEL 442 (582)
T ss_pred HHHHHHHHHHh
Confidence 57778888875
No 393
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=28.16 E-value=1.2e+03 Score=28.77 Aligned_cols=61 Identities=13% Similarity=0.239 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhh
Q 045447 1304 NLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGK 1369 (2058)
Q Consensus 1304 pLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~ 1369 (2058)
.++..+..++..++.....+...+.+.+|++ .|+. .+-+...+|+..+......+..+...
T Consensus 105 ~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~----~L~~-~g~is~~~~~~a~~~~~~a~~~l~~~ 165 (334)
T TIGR00998 105 QLQAKVESLKIKLEQAREKLLQAELDLRRRV----PLFK-KGLISREELDHARKALLSAKAALNAA 165 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHH-CCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555444544444 4554 57889899988888877776554433
No 394
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=27.66 E-value=9.2e+02 Score=28.03 Aligned_cols=26 Identities=8% Similarity=0.138 Sum_probs=11.8
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHH
Q 045447 125 QLMELVEQKDLQHSEKGATIKAYLDK 150 (2058)
Q Consensus 125 ~ll~llErk~~e~eel~e~l~~l~eK 150 (2058)
.+..++......+..|+..+..++..
T Consensus 153 ~l~~~l~~~~g~I~~L~~~I~~~~~~ 178 (184)
T PF05791_consen 153 ELQSILAGENGDIPQLQKQIENLNEE 178 (184)
T ss_dssp HHHHHHHHTT--HHHHHHHHHHHTGG
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 34444444555555555555554443
No 395
>PLN03188 kinesin-12 family protein; Provisional
Probab=27.50 E-value=2.4e+03 Score=31.89 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHH
Q 045447 1135 SVLEKLKNEAEEKY-DEVNEQNKIL 1158 (2058)
Q Consensus 1135 ~~Le~Ei~el~~R~-eDL~~QN~LL 1158 (2058)
..+.++|..+++++ .++..=|.+|
T Consensus 1228 ~~~~k~~~klkrkh~~e~~t~~q~~ 1252 (1320)
T PLN03188 1228 AEAYKQIDKLKRKHENEISTLNQLV 1252 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677766 5555555533
No 396
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=27.47 E-value=8.5e+02 Score=26.71 Aligned_cols=95 Identities=15% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHH----------------------------------
Q 045447 1350 EDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELA---------------------------------- 1395 (2058)
Q Consensus 1350 eE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~---------------------------------- 1395 (2058)
.+++.|...++.++..+..+...+..+...+.+....+..|..--.
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~g 85 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGAG 85 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCCC
Q ss_pred -----hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1396 -----NSRLELSEKEKRLSDISQAEAARKLEMEKQKRISAQLRRKCEMLSKEKE 1444 (2058)
Q Consensus 1396 -----~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~ 1444 (2058)
.+...+.-+++++..+......+...+..+++.+..+...+..+.++..
T Consensus 86 ~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~ 139 (140)
T PRK03947 86 YSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEAA 139 (140)
T ss_pred EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 397
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.35 E-value=1.6e+03 Score=29.78 Aligned_cols=28 Identities=32% Similarity=0.388 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Q 045447 1434 RKCEMLSKEKEESIKENQS-LARQLDDLK 1461 (2058)
Q Consensus 1434 ~~~e~~~~e~~e~~~e~~~-l~~q~~~~k 1461 (2058)
++.+.+.+++.++.++.+. |+.+++.++
T Consensus 114 ke~~~le~~L~~~~~e~~~~lq~~~e~~~ 142 (438)
T COG4487 114 KELELLEKELDELSKELQKQLQNTAEIIE 142 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666655 566666555
No 398
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=27.15 E-value=4.3e+02 Score=27.61 Aligned_cols=75 Identities=29% Similarity=0.329 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1090 ETIQELTKTSQALASLQEQASELRKLADALKAENSELKSKWELEKSVLEKLKNEAEEKYDEVNEQNKILHSRLEAL 1165 (2058)
Q Consensus 1090 e~IqeL~k~~e~~~~lq~e~~elr~~aesak~~L~e~e~SWeeqk~~Le~Ei~el~~R~eDL~~QN~LLH~QLE~l 1165 (2058)
.++.++..+-++...++.++..++...............+- .....|..+...++..+.++..+=.-+-.+|..+
T Consensus 26 ~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~-~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 26 EDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG-EDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT-CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888888888776655555554332 3334555666666666666666655555555544
No 399
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=27.03 E-value=5.8e+02 Score=25.94 Aligned_cols=67 Identities=12% Similarity=0.210 Sum_probs=33.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 045447 455 IILDERAEYERMVDAYSAINQKLQNFISEKSSLEKTIQELKADLRMRERDYYLAQKEISDLQKQVTV 521 (2058)
Q Consensus 455 ~L~eqR~EyErl~~~~~~Ls~~Leqa~~Erd~leke~r~a~~~l~~~eREn~~Lk~Ql~DLsrQV~v 521 (2058)
.|.+.+.-..++...+..|..+++.+..|...+-...+.+..++...-...+.+-.-+.|++.=|..
T Consensus 20 ~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~ 86 (90)
T PF06103_consen 20 VLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSE 86 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555555555555555555555555544444444444455555544443
No 400
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=27.01 E-value=9e+02 Score=26.83 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Q 045447 841 EEYIKQVEREWAEAKKELQEERDNVR 866 (2058)
Q Consensus 841 e~~Ie~LE~Els~lKkrL~eE~e~~r 866 (2058)
-.+++.+-..++.+|+.|....+..-
T Consensus 49 ~kql~~vs~~l~~tKkhLsqRId~vd 74 (126)
T PF07889_consen 49 SKQLEQVSESLSSTKKHLSQRIDRVD 74 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777778888888887766554
No 401
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=26.79 E-value=1.1e+03 Score=27.67 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=27.5
Q ss_pred HHHHHHHhHHHHHHH-------HHHHHhHHHHHhhhHHHHHHHHHh
Q 045447 175 AQATCTRLTQGKELI-------ERHNAWLNEELTSKVNSLVELRRT 213 (2058)
Q Consensus 175 ~k~~e~RLeQE~eLL-------qknneWLe~ELk~KteEll~~Rre 213 (2058)
-+.++..|.|--.+| +..|+=|..+|.+-+.++..+|.+
T Consensus 72 EqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~e 117 (182)
T PF15035_consen 72 EQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDE 117 (182)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556644444444 788888888888888888888777
No 402
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=26.67 E-value=8.2e+02 Score=32.94 Aligned_cols=79 Identities=16% Similarity=0.054 Sum_probs=61.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHh
Q 045447 135 LQHSEKGATIKAYLDKIINLTDNAAQREARLAETEAELARAQATCTRLTQGKELIERHNAWLNEELTSKVNSLVELRRT 213 (2058)
Q Consensus 135 ~e~eel~e~l~~l~eKi~eL~~~~~~~e~rl~e~es~~~s~k~~e~RLeQE~eLLqknneWLe~ELk~KteEll~~Rre 213 (2058)
.++++|--+...|.+--..|+-.+..+.++++++..+.--.+-.....+|=+.-|+..|.-|++||++--.++...|++
T Consensus 301 rEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~ 379 (832)
T KOG2077|consen 301 REVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQK 379 (832)
T ss_pred HHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555555555567777888888999998877666666667778888889999999999999988888888776
No 403
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=26.63 E-value=1.2e+03 Score=30.05 Aligned_cols=67 Identities=19% Similarity=0.291 Sum_probs=37.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---CHHHHH
Q 045447 1277 LREENKYNFEECQKLREVAQKTKSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNI---DVEDYD 1353 (2058)
Q Consensus 1277 LReE~~~~~~k~qkL~e~lqk~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~ri---DPeE~e 1353 (2058)
||.-|....-.+...+......+.+++.+.-+++.+.-+..-+..||. +|.+.=++|..| +.+||.
T Consensus 3 Lk~~nR~~~~~~~~~k~~t~e~k~~vD~~~LqLqNl~YE~~hL~kEI~-----------~C~~F~s~~~~i~Lv~~eEF~ 71 (355)
T PF09766_consen 3 LKQLNRAAQFRIKKAKDETAEAKQEVDALHLQLQNLLYEKSHLQKEIK-----------KCLDFKSKYEDIELVPVEEFY 71 (355)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHH-----------HHhccCCCCCCCcCccHHHHH
Confidence 444444444444445555555556666666666666666655555555 455555677654 345554
Q ss_pred H
Q 045447 1354 R 1354 (2058)
Q Consensus 1354 ~ 1354 (2058)
+
T Consensus 72 ~ 72 (355)
T PF09766_consen 72 A 72 (355)
T ss_pred H
Confidence 4
No 404
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=26.56 E-value=2.1e+03 Score=30.88 Aligned_cols=574 Identities=18% Similarity=0.190 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--------HhHHHHHHHHHHHHHHHHHHH
Q 045447 943 GKEELEKLKEEAQANREHMLQYKSIAQVNEAALKEMETVHENFRTRVEGVK--------KSLEDELHSLRKRVSELEREN 1014 (2058)
Q Consensus 943 lk~ELe~lkeeL~~Ak~qveQYK~IAqsaEeaL~~l~~~~e~yK~e~E~~l--------~e~e~ei~~L~~ri~eLe~El 1014 (2058)
+..++..||.+|..+..+---|-.-+--...+|++-....-..|.+-|..+ .+.+..-..|+.+|.+++..+
T Consensus 22 ae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l 101 (769)
T PF05911_consen 22 AEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRL 101 (769)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHH---HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhHHHHHH---
Q 045447 1015 ILKSEEI---ASAAGVREDALASAREEITSLKEERSIKISQIVNLEVQVSALKEDLEKEHER--RQAAQANYERQVI--- 1086 (2058)
Q Consensus 1015 ~~~~eE~---~~~~~~~e~ql~~l~~El~~Lk~E~~~~~~~~~~~E~q~~~l~~DL~~Q~~~--a~eAQ~nYErElv--- 1086 (2058)
....-+. ......+...+..+.......-.++......++.++.+..+|+-++....+- .+.-..+|.+.-+
T Consensus 102 ~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a 181 (769)
T PF05911_consen 102 AESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAA 181 (769)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q ss_pred --hhHHHHHHHHHHHHHHHHHHH---------------------------------------------------------
Q 045447 1087 --LQSETIQELTKTSQALASLQE--------------------------------------------------------- 1107 (2058)
Q Consensus 1087 --LHAe~IqeL~k~~e~~~~lq~--------------------------------------------------------- 1107 (2058)
.|.+.|+.++++-..-..|+.
T Consensus 182 ~kqhle~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (769)
T PF05911_consen 182 SKQHLESVKKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESLGRDSGENRRRRSPSRPSSPHDFSPQNPQKRSKESE 261 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHhccccccccCCCCCCcccccccccccccccchhhhH
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCC
Q 045447 1108 ----QASELRKLADALKAENSELKSKWELEKSVLEKLKNEAEEKYDEVNEQNKILHSRLEALHIQLTEKDGSSVRISSQS 1183 (2058)
Q Consensus 1108 ----e~~elr~~aesak~~L~e~e~SWeeqk~~Le~Ei~el~~R~eDL~~QN~LLH~QLE~lt~Qia~~~~~~a~~ss~s 1183 (2058)
++-.+..+--..+..|..-..-...-+.+|=+..+.+..==.-| ..| .|-.++....+.+........++..+
T Consensus 262 ~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql-~~~--~~~~~e~~~s~~~~~~~s~~s~se~~ 338 (769)
T PF05911_consen 262 FLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQL-KSS--GQVSMELSSSQNTSNPPSLTSMSEDG 338 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh--hccccccccccCCCCCCchhcccccC
Q ss_pred CCCCCCCchh-----HHHHHHHHhhhhh------------HHHHHHhhHHHHHHHH------------------------
Q 045447 1184 TDSNPIGDAS-----LQSVISFLRNRKS------------IAETEVALLTTEKLRL------------------------ 1222 (2058)
Q Consensus 1184 ~~~~s~~~e~-----L~eVI~yLRREKE------------Iae~qlel~~qE~~RL------------------------ 1222 (2058)
.+......+. +-++=.| +.+|- -.+.=-|.+..|.+-.
T Consensus 339 ~dd~~s~s~SWAsaLiseldqf-k~~k~~~~~~~~~~~~~~i~LMDDFlEmEkLA~~s~~~~~~~~~~~~~~~~~~~~~~ 417 (769)
T PF05911_consen 339 NDDEGSCSDSWASALISELDQF-KNEKVISRSSSKTISSSDIDLMDDFLEMEKLAALSRDSSSPSSCSSSEVDSDSSVTL 417 (769)
T ss_pred CCCCCcccchhHHHHhchHHHh-ccccccccccccCCccccHHHHHHHHHHHHHHhcCCCCCCCCCCCCccccccccccc
Q ss_pred --------------------------------HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHHHHHHHH
Q 045447 1223 --------------------------------QKQLESALKAAENAQASLTTERANSRAMLLTEEEIKSLKLQVRELNLL 1270 (2058)
Q Consensus 1223 --------------------------------qqQle~~qkqLdEar~~L~~Ere~s~t~~~s~e~hkeLmeKleqLNlL 1270 (2058)
+..+.....-|+..+..|............+.......-.-+......
T Consensus 418 ~~~~~~~~~~~~~~~~~~~~~wLqsv~k~v~~q~~~s~i~~ILedI~~al~~~~~~~~~~~~~~~~~~~~~sL~e~~~s~ 497 (769)
T PF05911_consen 418 ESSSKRESVLESDKLSDRIPEWLQSVLKLVLEQKEVSKISEILEDIEIALDSINNSSNCDDDSEEYESMEASLVEESKSM 497 (769)
T ss_pred cccccccccccchhhcccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccccccccccchhhhhhhhHHHHHHHH
Q ss_pred HHhhHHHHHHhhhhHHHHHHHHHHHHHhhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 045447 1271 RESNVQLREENKYNFEECQKLREVAQKTKSDCD---NLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNI 1347 (2058)
Q Consensus 1271 RESN~tLReE~~~~~~k~qkL~e~lqk~~~ele---pLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~ri 1347 (2058)
.+-+..|+.-..+..+.+.-|+.++..++.-+. .|+..|.++..-++-.-.--..|+. |-.....|=..+...
T Consensus 498 ~~~s~eL~~avskIsEfv~~LekeVh~C~DLLsgkadLE~fieE~s~tLdwIls~~~SLqD----v~s~~sEIK~~f~~~ 573 (769)
T PF05911_consen 498 IEISQELNVAVSKISEFVLVLEKEVHVCQDLLSGKADLERFIEEFSLTLDWILSNCFSLQD----VSSMRSEIKKNFDGD 573 (769)
T ss_pred HhhcccHHHHHHhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHccchHHH----HHHHHHHHHHhhhhc
Q ss_pred CHHHHHH------HHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHH
Q 045447 1348 DVEDYDR------LKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLE 1421 (2058)
Q Consensus 1348 DPeE~e~------Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e 1421 (2058)
++.+.+. .......++.+|.....+...+...|....+++..++..|.+....+.+|..++.....-...+..+
T Consensus 574 ss~e~E~~~~dea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~q 653 (769)
T PF05911_consen 574 SSSEAEINSEDEADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQ 653 (769)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcchhHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 045447 1422 MEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLKQGKKSTGDVTGEQVMKEKEEKDTRIQILERTVERQREELK 1501 (2058)
Q Consensus 1422 ~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k~~~~~~~~~~~~q~~ke~~~~~~~~~~~~~~~e~~~~~~~ 1501 (2058)
++..+.....+..++..+..+...+......|..+|+.-++.- .+-.-+-+.|+..+++...+..
T Consensus 654 l~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~---------------~e~~~kc~~Le~el~r~~~~~~ 718 (769)
T PF05911_consen 654 LKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALS---------------EELEAKCRELEEELERMKKEES 718 (769)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------hhhhhHHHHHHHHHHhhhcccc
Q ss_pred HhhhhhHHHHHHhhhhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 045447 1502 KEKDDNQKEKEKRLKGEKVMLDSA---KLADQWKTRISSELEQHKQAV 1546 (2058)
Q Consensus 1502 ~e~~~~~~~~~~~~~~e~~~~~~~---~~~~~~~~~~~~~~e~~~~~~ 1546 (2058)
-...+ ......++|+.|..+- ..-+.++..|-.+| ++|
T Consensus 719 ~~~~~---~~~~k~kqe~EiaaAA~KLAECQeTI~sLGkQL----ksL 759 (769)
T PF05911_consen 719 LQQLA---NEDKKIKQEKEIAAAAEKLAECQETIASLGKQL----KSL 759 (769)
T ss_pred hhhcc---ccccccchHHHHHHHHHHHHHHHHHHHHHHHHH----Hhc
No 405
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=26.50 E-value=2.4e+03 Score=31.59 Aligned_cols=19 Identities=5% Similarity=-0.053 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 045447 1136 VLEKLKNEAEEKYDEVNEQ 1154 (2058)
Q Consensus 1136 ~Le~Ei~el~~R~eDL~~Q 1154 (2058)
.|.++|.++.=++=+++.|
T Consensus 337 ~l~~~IAdlRl~~f~~~q~ 355 (1109)
T PRK10929 337 QLDTEMAQLRVQRLRYEDL 355 (1109)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4566666666555555553
No 406
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=26.45 E-value=2.7e+02 Score=26.63 Aligned_cols=44 Identities=23% Similarity=0.316 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 045447 484 KSSLEKTIQELKADLRMRERDYYLAQKEISDLQKQVTVLLKECR 527 (2058)
Q Consensus 484 rd~leke~r~a~~~l~~~eREn~~Lk~Ql~DLsrQV~vLL~Ev~ 527 (2058)
+.+....+..+...+..++.+|..|+.++.+|...+..|..+++
T Consensus 21 R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 21 RQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44445566667777777888888888888888888887776653
No 407
>KOG4421 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.99 E-value=1.1e+03 Score=29.97 Aligned_cols=154 Identities=26% Similarity=0.266 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 045447 56 LEQKFISLQEEFSKVESQNAQLQKSLDDRVNELAEVQSQKHQLHLQLIGKDGEIERLTMEVAELHKSRRQLMELVEQKDL 135 (2058)
Q Consensus 56 lEqk~~sl~~e~~~le~e~~eL~~~l~~~~~Ela~~q~~~~~L~~~~~~~dseverLr~ei~eLe~ekr~ll~llErk~~ 135 (2058)
-+.+|..|..++.++..+...|+..+-+. +.+...|...+..+.+.|.|...+.++|.--|.+|.+-++.-.-
T Consensus 13 a~~kyqklaqeysklraqakvlke~viee-------~gk~~kl~eelk~k~a~irrieaendsl~frndql~rrvenfqf 85 (637)
T KOG4421|consen 13 AEAKYQKLAQEYSKLRAQAKVLKEAVIEE-------QGKEAKLREELKQKAASIRRIEAENDSLGFRNDQLERRVENFQF 85 (637)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcchhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHhcc
Confidence 35688888889999999999888865422 23333444445566677788888888888888888877765444
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHhhh
Q 045447 136 QHSEKGATIKAYLDKIINLTDNAAQREARLAETEAELARAQATCTRLTQGKELIERHNAWLNEELTSKVNSLVELRRTHA 215 (2058)
Q Consensus 136 e~eel~e~l~~l~eKi~eL~~~~~~~e~rl~e~es~~~s~k~~e~RLeQE~eLLqknneWLe~ELk~KteEll~~Rre~~ 215 (2058)
++----.--++-.+|-.. .- .+. .....+..++.-++|++-+-.-+++.|-.++- .--|.|.
T Consensus 86 e~pt~~aa~k~~~~k~~~-------~~--tqs--dsaaaaaarid~~ee~l~~~~aq~erlvgeia-------enerqha 147 (637)
T KOG4421|consen 86 EIPTHEAAKKKDKDKGGR-------RG--TQS--DSAAAAAARIDAAEEALIFEEAQKERLVGEIA-------ENERQHA 147 (637)
T ss_pred CCCCCccccccccccCCC-------CC--CCC--CcccccccccchHHHHHHHHHHHhhHHHHHHH-------hhhHhhH
Confidence 332211111110000000 00 000 00012233455566777776677777766654 3334555
Q ss_pred hhHHHHHhhHHHHHHHHHH
Q 045447 216 DLEADMSAKLSDVERQFSE 234 (2058)
Q Consensus 216 ~~e~~l~aki~eLqre~~E 234 (2058)
-.-++++.+|+.-.|.+..
T Consensus 148 vemaelsekia~emr~led 166 (637)
T KOG4421|consen 148 VEMAELSEKIADEMRDLED 166 (637)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5556688888877776653
No 408
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=25.82 E-value=1.9e+03 Score=30.11 Aligned_cols=18 Identities=17% Similarity=0.372 Sum_probs=10.2
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 045447 1346 NIDVEDYDRLKVEVRQME 1363 (2058)
Q Consensus 1346 riDPeE~e~Lk~Eie~Le 1363 (2058)
..+|-||+.|..++..|-
T Consensus 201 ~l~~gE~e~L~~e~~rLs 218 (557)
T COG0497 201 NLQPGEDEELEEERKRLS 218 (557)
T ss_pred CCCCchHHHHHHHHHHHh
Confidence 445556666666655443
No 409
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=25.70 E-value=4.8e+02 Score=29.62 Aligned_cols=13 Identities=31% Similarity=0.797 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHh
Q 045447 1449 ENQSLARQLDDLK 1461 (2058)
Q Consensus 1449 e~~~l~~q~~~~k 1461 (2058)
.++.|+++|+.++
T Consensus 52 d~eeLk~~i~~lq 64 (155)
T PF06810_consen 52 DNEELKKQIEELQ 64 (155)
T ss_pred CHHHHHHHHHHHH
Confidence 4444444444444
No 410
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=25.46 E-value=3.9e+02 Score=31.59 Aligned_cols=98 Identities=20% Similarity=0.224 Sum_probs=0.0
Q ss_pred cCCCCHHHHHH--HHHHHHHHHHHHhhhhHHHHH-HHhhhhhhhhHHHHHHHHHHhhHHHHHHHH-------HHhhhHHH
Q 045447 1344 CRNIDVEDYDR--LKVEVRQMEEKLSGKNAEIEE-TRNLLSTKLDTISQLEQELANSRLELSEKE-------KRLSDISQ 1413 (2058)
Q Consensus 1344 y~riDPeE~e~--Lk~Eie~Le~~L~~~~ae~e~-~~~~l~~~~~~~~~l~~~L~~~~~e~~~le-------~k~~d~~~ 1413 (2058)
|..+.-.||+. |+.++.+|+.+|.....+... ....-....-....+++-|.=-+.++..++ .-+..+..
T Consensus 88 fS~~~~~dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~ 167 (195)
T PF12761_consen 88 FSATEGTDWEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVRE 167 (195)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1414 AEAARKLEMEKQKRISAQLRRKCEMLSK 1441 (2058)
Q Consensus 1414 ~~~~l~~e~e~~~~~~~~~k~~~e~~~~ 1441 (2058)
.+.++.++++.+..+|..=+..++.|.+
T Consensus 168 Dl~~ie~QV~~Le~~L~~k~~eL~~L~q 195 (195)
T PF12761_consen 168 DLDTIEEQVDGLESHLSSKKQELQQLRQ 195 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 411
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=25.41 E-value=1e+03 Score=26.98 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1415 EAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQL 1457 (2058)
Q Consensus 1415 ~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~ 1457 (2058)
...+++.++.+.+....++..+..+.+....+.++++.+++..
T Consensus 96 ie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~ 138 (145)
T COG1730 96 IEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQ 138 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777666666666666666666655544
No 412
>PF12764 Gly-rich_Ago1: Glycine-rich region of argonaut; InterPro: IPR024357 This domain is found in the N terminus of some argonaut proteins. Argonaut (AGO) proteins are involved in RNA-mediated post-transcriptional gene silencing [].
Probab=25.32 E-value=60 Score=34.12 Aligned_cols=10 Identities=50% Similarity=0.850 Sum_probs=6.1
Q ss_pred ccCCCCcCCC
Q 045447 2031 IRGRGRPAGR 2040 (2058)
Q Consensus 2031 ~~~~~~~~~~ 2040 (2058)
+||||....|
T Consensus 8 grGRGgp~~q 17 (104)
T PF12764_consen 8 GRGRGGPPQQ 17 (104)
T ss_pred ccCCCCCccc
Confidence 5777765444
No 413
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=25.19 E-value=1.7e+03 Score=29.47 Aligned_cols=265 Identities=14% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 834 AAERRKQEEYIKQVERE--WAEAKKELQEERDNVRLLTSDREQTLKNAVKQVEEMGKELATALRAVASAETRAAVAETKL 911 (2058)
Q Consensus 834 s~~Rrrle~~Ie~LE~E--ls~lKkrL~eE~e~~r~L~~~re~~~~e~qkrid~l~~El~~~~eal~~aetr~~vle~rv 911 (2058)
.+.|+-+..+++.||+- +.++..+|....+-+..-...--.....+.+|+-.+.-+..+..+++..|.-..-+-..++
T Consensus 189 qe~~~ll~~Rve~le~~Sal~~lq~~L~la~~~~~~~~e~~i~~~~~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~ 268 (554)
T KOG4677|consen 189 QEVRRLLKGRVESLERFSALRSLQDKLQLAEEAVSMHDENVITAVLIFLKRTLSKEIEFRNELEVRQLALRHLIHFKKEI 268 (554)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhccc--------------ccCCccccCCCCCCchhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 912 SDMEKRIRP--------------LDAKGDEVDDGSRPSDEVQLQVGKEELEKLKEEAQANREHMLQYKSIAQVNEAALKE 977 (2058)
Q Consensus 912 ~~Le~kL~~--------------~~~k~~s~~~~~~~s~E~eL~~lk~ELe~lkeeL~~Ak~qveQYK~IAqsaEeaL~~ 977 (2058)
+++..++.- -.++.+.-........-.++..++.+++..+++++++..|+-+.+.--+..|+....
T Consensus 269 de~k~~~~l~~~l~~keeL~~s~~~e~~i~qs~~kstas~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~ 348 (554)
T KOG4677|consen 269 DEQKLLLDLFRFLDRKEELALSHYREHLIIQSPDKSTASRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRH 348 (554)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 978 METVHENFRTRVEGVKKSLEDELHSLRKRVSELERENILKSEEIASAAGVREDALASAREEITSLKEERSIKISQIVNLE 1057 (2058)
Q Consensus 978 l~~~~e~yK~e~E~~l~e~e~ei~~L~~ri~eLe~El~~~~eE~~~~~~~~e~ql~~l~~El~~Lk~E~~~~~~~~~~~E 1057 (2058)
+..+-..-+...--.+....+-+..|...++-+.-|.--..+.+......+.-.+-....||..|.+.+.... ..
T Consensus 349 l~s~~~~q~~~~h~~ka~~~~~~~~l~~~~ec~~~e~e~~~~~~~r~~~~~qski~dk~~el~kl~~~l~~r~-----~~ 423 (554)
T KOG4677|consen 349 LESAGQTQIFRKHPRKASILNMPLVLTLFYECFYHETEAEGTFSSRVNLKKQSKIPDKQYELTKLAARLKLRA-----WN 423 (554)
T ss_pred HHHHhHHHHHHhhhHhhhhhhchHHHHHHHHHHHHHHHHhhhhhhhccchhhccCcchHHHHHHHHHHHHHHh-----hh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1058 VQVSALKEDLEKEHERRQAAQANYERQVILQSETIQELTKTSQALASLQEQAS 1110 (2058)
Q Consensus 1058 ~q~~~l~~DL~~Q~~~a~eAQ~nYErElvLHAe~IqeL~k~~e~~~~lq~e~~ 1110 (2058)
.....+-.-+..-......+|.-+|+= +..+.++.-.+..||+..+
T Consensus 424 ~s~~~l~~~~~qLt~tl~qkq~~le~v-------~~~~~~ln~~lerLq~~~N 469 (554)
T KOG4677|consen 424 DSVDALFTTKNQLTYTLKQKQIGLERV-------VEILHKLNAPLERLQEYVN 469 (554)
T ss_pred hhHHHHhchhHHHHHHHHHHHHHHHHH-------HHHHhhhhhhHHHHHHHhc
No 414
>PRK12704 phosphodiesterase; Provisional
Probab=25.00 E-value=1.8e+03 Score=29.81 Aligned_cols=9 Identities=44% Similarity=0.416 Sum_probs=6.6
Q ss_pred CcceeeccC
Q 045447 1566 GTSVVQLLS 1574 (2058)
Q Consensus 1566 ~~~~~~~~~ 1574 (2058)
..|||.|||
T Consensus 210 ~~~~v~lp~ 218 (520)
T PRK12704 210 TVSVVNLPN 218 (520)
T ss_pred ceeeeecCC
Confidence 357788887
No 415
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=24.56 E-value=1.4e+03 Score=28.13 Aligned_cols=135 Identities=21% Similarity=0.281 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------ccccCCCcchhHHHHhhhhhhhHHHHHHHHHHHH
Q 045447 1424 KQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLKQ-------GKKSTGDVTGEQVMKEKEEKDTRIQILERTVERQ 1496 (2058)
Q Consensus 1424 ~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k~-------~~~~~~~~~~~q~~ke~~~~~~~~~~~~~~~e~~ 1496 (2058)
.-+.++.-|..-++ .++-.+.+....|+.-.=++.. ..++.+ .+-+++. .+|.+|...++..
T Consensus 104 ie~~fl~PL~~~le---~dlk~I~K~RkkLe~~RLD~D~~K~r~~~a~~~~~--~~~~~~~------~K~~~l~ee~e~a 172 (246)
T cd07618 104 LEKDILDPLNQLAE---VEIPNIQKQRKQLAKLVLDWDSARGRYNQAHKSSG--TNFQAMP------SKIDMLKEEMDEA 172 (246)
T ss_pred HHHHHHHHHHHHHH---hHHHHHHHHHHHHHhHHhhHHHHHHHHHhccccCc--ccccccc------chhhhhHHHHHHH
Confidence 33467777775555 5555555555555555444431 111111 1112222 4456666666555
Q ss_pred HHHHHHhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcceeeccCcc
Q 045447 1497 REELKKEKDDNQKEKEKRLKGEKVMLDSAKLADQWKTRISSELEQHKQAVKRLSDELEKLKHTEAGLPEGTSVVQLLSGT 1576 (2058)
Q Consensus 1497 ~~~~~~e~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~el~~~~~~~~~~~~~~~~~~~~~~~ 1576 (2058)
+..+..-+|.+-+.---=..+| ...+.+=..=+..+++=|++|+.-|+.=+-.++..++.+|+-. .-|.
T Consensus 173 ~~k~E~~kD~~~~dm~~~l~~e------~e~~~~l~~lv~aQ~eYHr~a~e~Le~~~p~i~~~~~~~~~k~-----~fg~ 241 (246)
T cd07618 173 GNKVEQCKDQLAADMYNFASKE------GEYAKFFVLLLEAQADYHRKALAVIEKVLPEIQAHQDKWMEKP-----AFGT 241 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-----CCCC
Confidence 5445445544333210001111 1222222223358888999999999999999999999888866 2355
Q ss_pred chhh
Q 045447 1577 NLDD 1580 (2058)
Q Consensus 1577 ~~~~ 1580 (2058)
.|++
T Consensus 242 ~lee 245 (246)
T cd07618 242 PLEE 245 (246)
T ss_pred Cccc
Confidence 5554
No 416
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.44 E-value=5.7e+02 Score=26.63 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1135 SVLEKLKNEAEEKYDEVNEQNKILHSRLE 1163 (2058)
Q Consensus 1135 ~~Le~Ei~el~~R~eDL~~QN~LLH~QLE 1163 (2058)
..|..++..++.+...|..+|..|+.+|+
T Consensus 71 ~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 71 QLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47789999999999999999999999985
No 417
>PF13166 AAA_13: AAA domain
Probab=24.43 E-value=2e+03 Score=30.06 Aligned_cols=11 Identities=9% Similarity=0.220 Sum_probs=5.6
Q ss_pred HHHHHHHHHHH
Q 045447 20 VAAKADAYIRY 30 (2058)
Q Consensus 20 i~~K~e~~i~~ 30 (2058)
...++..||..
T Consensus 270 ~~~~l~~~f~~ 280 (712)
T PF13166_consen 270 RKERLEKYFDE 280 (712)
T ss_pred HHHHHHHHHHH
Confidence 35555555443
No 418
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=24.19 E-value=7.8e+02 Score=25.18 Aligned_cols=75 Identities=17% Similarity=0.253 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHccc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045447 437 ESEAVLQRVLYELEEKAG---IILDERAEYERMVDAYSAINQKLQNFISEKSSLEKTIQELKADLRMRERDYYLAQKEIS 513 (2058)
Q Consensus 437 rLq~~Ld~Iv~ELEeKAP---~L~eqR~EyErl~~~~~~Ls~~Leqa~~Erd~leke~r~a~~~l~~~eREn~~Lk~Ql~ 513 (2058)
||+..||.|=.|.+.-+- .++.++.+|+.- +..=.+.++....-...++..-.+++ ..++-|+.+|+.+|.
T Consensus 1 Rl~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~k---i~~Qi~Em~~ir~~v~eLE~~h~kmK---~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 1 RLNELLDAIRQEFENLSQEANSYKHQKDEYEHK---INSQIQEMQQIRQKVYELEQAHRKMK---QQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 345556666555554333 233445555442 22122222222222333333322222 346677777776665
Q ss_pred HHHH
Q 045447 514 DLQK 517 (2058)
Q Consensus 514 DLsr 517 (2058)
-.++
T Consensus 75 ~r~~ 78 (79)
T PF08581_consen 75 QRGR 78 (79)
T ss_dssp HHTT
T ss_pred hhCC
Confidence 4433
No 419
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=24.11 E-value=7.2e+02 Score=24.93 Aligned_cols=16 Identities=38% Similarity=0.426 Sum_probs=6.5
Q ss_pred cchhHHHHHHHHHHHH
Q 045447 104 GKDGEIERLTMEVAEL 119 (2058)
Q Consensus 104 ~~dseverLr~ei~eL 119 (2058)
.+|..|.-|..+-.-|
T Consensus 9 EKDe~Ia~L~eEGekL 24 (74)
T PF12329_consen 9 EKDEQIAQLMEEGEKL 24 (74)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3444444444333333
No 420
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=24.04 E-value=1.5e+03 Score=28.42 Aligned_cols=124 Identities=11% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045447 1028 REDALASAREEITSLKEERSIKISQIVNLEVQVSALKEDLEKEHERRQAAQANYERQVILQSETIQELTKTSQALASLQE 1107 (2058)
Q Consensus 1028 ~e~ql~~l~~El~~Lk~E~~~~~~~~~~~E~q~~~l~~DL~~Q~~~a~eAQ~nYErElvLHAe~IqeL~k~~e~~~~lq~ 1107 (2058)
+..++..+..++...+..+......+......+..++..+......+..|+.+|+| ..++...-.--+.
T Consensus 84 ~~~~l~~a~a~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R-----------~~~L~~~g~vS~~ 152 (346)
T PRK10476 84 YELTVAQAQADLALADAQIMTTQRSVDAERSNAASANEQVERARANAKLATRTLER-----------LEPLLAKGYVSAQ 152 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHCCCcCHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1108 QASELRKLADALKAENSELKSKWELEKSVLEKLKNEAEEKYDEVNEQNKILHSRLE 1163 (2058)
Q Consensus 1108 e~~elr~~aesak~~L~e~e~SWeeqk~~Le~Ei~el~~R~eDL~~QN~LLH~QLE 1163 (2058)
++.+.+.....++..+...+......+..+ ..+...+..+..+..+=......|+
T Consensus 153 ~~~~a~~~~~~a~~~l~~a~~~~~~~~~~~-~~~~~~~a~~~~~~a~l~~a~~~l~ 207 (346)
T PRK10476 153 QVDQARTAQRDAEVSLNQALLQAQAAAAAV-GGVDALVAQRAAREAALAIAELHLE 207 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHhh
No 421
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=23.82 E-value=5.2e+02 Score=34.56 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 045447 1347 IDVEDYDRLKVEVRQMEEKLSGKNAEIEETRN 1378 (2058)
Q Consensus 1347 iDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~ 1378 (2058)
.+++.+..|+.+|..|+.++....+++..+++
T Consensus 68 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~ 99 (525)
T TIGR02231 68 PDPERLAELRKQIRELEAELRDLEDRGDALKA 99 (525)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888888877776666644443
No 422
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=23.79 E-value=4.5e+02 Score=27.47 Aligned_cols=9 Identities=22% Similarity=0.198 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 045447 1425 QKRISAQLR 1433 (2058)
Q Consensus 1425 ~~~~~~~~k 1433 (2058)
+...++.+|
T Consensus 72 l~~e~~~lk 80 (108)
T PF02403_consen 72 LKAEVKELK 80 (108)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 423
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=23.79 E-value=3.2e+02 Score=31.02 Aligned_cols=60 Identities=20% Similarity=0.281 Sum_probs=33.2
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHH
Q 045447 938 VQLQVGKEELEKLKEEAQANREHMLQYKSIAQVNEAALKEMETVHENFRTRVEGVKKSLEDELH 1001 (2058)
Q Consensus 938 ~eL~~lk~ELe~lkeeL~~Ak~qveQYK~IAqsaEeaL~~l~~~~e~yK~e~E~~l~e~e~ei~ 1001 (2058)
.++..+..+++.++.+|..+..++..|+.-+ .....|....+.|+.......+..++++.
T Consensus 20 ~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~----~d~eeLk~~i~~lq~~~~~~~~~~e~~l~ 79 (155)
T PF06810_consen 20 AKVDKVKEERDNLKTQLKEADKQIKDLKKSA----KDNEELKKQIEELQAKNKTAKEEYEAKLA 79 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777778888888888887777722 22223334444444444444444443333
No 424
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=23.76 E-value=7.4e+02 Score=29.60 Aligned_cols=53 Identities=17% Similarity=0.210 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 045447 22 AKADAYIRYLQTDFETVKARADAAAITAEQTCSLLEQKFISLQEEFSKVESQN 74 (2058)
Q Consensus 22 ~K~e~~i~~l~~el~t~KA~~e~~~i~aEQ~~~~lEqk~~sl~~e~~~le~e~ 74 (2058)
..++.-+..+..+++.+-..--.....+-..+..+|.++.++-.+.-.++..+
T Consensus 146 ~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~ 198 (221)
T PF05700_consen 146 KRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVAC 198 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333444444444444444433333333333
No 425
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=23.73 E-value=4.8e+02 Score=32.03 Aligned_cols=74 Identities=19% Similarity=0.288 Sum_probs=42.2
Q ss_pred HHhhHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHH
Q 045447 1271 RESNVQLREENKYNFEECQKLREVAQKTKSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVE 1350 (2058)
Q Consensus 1271 RESN~tLReE~~~~~~k~qkL~e~lqk~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPe 1350 (2058)
-|.-++||--.+ .+...+++.+..+...-+....|.++|+ .=+.|..|.++| |++-.+|-|.
T Consensus 104 ~e~Ekvlk~aIq-------~i~~~~q~~~~~Lnnvasdea~L~~Kie-------rrk~ElEr~rkR----le~LqsiRP~ 165 (338)
T KOG3647|consen 104 LEVEKVLKSAIQ-------AIQVRLQSSRAQLNNVASDEAALGSKIE-------RRKAELERTRKR----LEALQSIRPA 165 (338)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHHH----HHHHHhcchH
Confidence 345566666543 3333344444444444444444544444 444455588888 6777889995
Q ss_pred ---HHHHHHHHHHHH
Q 045447 1351 ---DYDRLKVEVRQM 1362 (2058)
Q Consensus 1351 ---E~e~Lk~Eie~L 1362 (2058)
||++-.+++..|
T Consensus 166 ~MdEyE~~EeeLqkl 180 (338)
T KOG3647|consen 166 HMDEYEDCEEELQKL 180 (338)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777766665544
No 426
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.62 E-value=1.2e+03 Score=28.42 Aligned_cols=115 Identities=10% Similarity=0.168 Sum_probs=0.0
Q ss_pred HhhhhccCCCCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH----HcccchHHHHHHHHHHHHHHHHHHHHHH
Q 045447 403 LAASLLRDGWSLAKIYAKYQEAVDALRHEQLGRKESEAVLQRVLYELE----EKAGIILDERAEYERMVDAYSAINQKLQ 478 (2058)
Q Consensus 403 aAss~~KsG~SLTqlYt~Yve~k~qL~~Er~en~rLq~~Ld~Iv~ELE----eKAP~L~eqR~EyErl~~~~~~Ls~~Le 478 (2058)
.+.++.|....+.+.|..|..+-..|-.=--+ |..-|..|=.-++ .-.-.+......|.-....|..++.-+-
T Consensus 76 i~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~---L~~~L~~~a~~~d~~~~~~~~~~~~l~~~f~~~Lkeyv~y~~slK 152 (243)
T cd07666 76 ISQRIYKEQREYFEELKEYGPIYTLWSASEEE---LADSLKGMASCIDRCCKATDKRMKGLSEQLLPVIHEYVLYSETLM 152 (243)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhccchh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 045447 479 NFISEKSSLEKTIQELKADLRMRERDYYLAQKEISDLQKQVT 520 (2058)
Q Consensus 479 qa~~Erd~leke~r~a~~~l~~~eREn~~Lk~Ql~DLsrQV~ 520 (2058)
.++.+|+.++-++.+..-.+.....+...+..++.+|..+|.
T Consensus 153 ~vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve 194 (243)
T cd07666 153 GVIKRRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVE 194 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
No 427
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=23.33 E-value=2e+03 Score=29.64 Aligned_cols=78 Identities=17% Similarity=0.249 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCccccCCCCCCchhHhHHHhHHHHHHHHHHH
Q 045447 875 TLKNAVKQVEEMGKELATALRAVASAETRAAVAETKLSDMEKRIRPLDAKGDEVDDGSRPSDEVQLQVGKEELEKLKEEA 954 (2058)
Q Consensus 875 ~~~e~qkrid~l~~El~~~~eal~~aetr~~vle~rv~~Le~kL~~~~~k~~s~~~~~~~s~E~eL~~lk~ELe~lkeeL 954 (2058)
.+.++|..-|.+..- ......|+..+..++.+++.|+.++...++- . ..+..++..+.....++
T Consensus 132 aL~aaq~~ad~l~q~----~~~~~~Aq~~l~~aq~~l~~lq~~a~~~~P~--------s----p~l~~a~~av~~a~~~a 195 (593)
T PRK15374 132 ALGEAQEATDLYEAS----IKKTDTAKSVYDAAEKKLTQAQNKLQSLDPA--------D----PGYAQAEAAVEQAGKEA 195 (593)
T ss_pred HHHHHHHHHHHHHHH----HhhhhhHHHHHHHHHHHHHHHHHHHhhcCCC--------C----hhHHHHHHHHHHHHHHH
Confidence 345555565555332 1123334444455566666676666554332 1 12667777888888888
Q ss_pred HHHHHHHHHHHHHH
Q 045447 955 QANREHMLQYKSIA 968 (2058)
Q Consensus 955 ~~Ak~qveQYK~IA 968 (2058)
..++...++|....
T Consensus 196 ~~a~~~~~~~v~a~ 209 (593)
T PRK15374 196 TEAKEALDKATDAT 209 (593)
T ss_pred HHHHHHHHHHHHHH
Confidence 88999999988776
No 428
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=23.19 E-value=1.4e+03 Score=27.65 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 045447 843 YIKQVEREWAEAKKELQEE 861 (2058)
Q Consensus 843 ~Ie~LE~Els~lKkrL~eE 861 (2058)
++..+-..+..|.+.|+.+
T Consensus 35 r~~~i~e~i~~Le~~l~~E 53 (247)
T PF06705_consen 35 RFQDIKEQIQKLEKALEAE 53 (247)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444
No 429
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.12 E-value=2.9e+02 Score=31.93 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 045447 1348 DVEDYDRLKVEVRQMEEKLSGKNAEIEETRNL 1379 (2058)
Q Consensus 1348 DPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~ 1379 (2058)
..++.+.+++++++|+.+|..+..+++.++++
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ 183 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQ 183 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777788888888887777777676655543
No 430
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=23.10 E-value=9.2e+02 Score=25.60 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 943 GKEELEKLKEEAQANREHMLQYKS 966 (2058)
Q Consensus 943 lk~ELe~lkeeL~~Ak~qveQYK~ 966 (2058)
+-..+..++.++.....+..++..
T Consensus 8 ~~~~~q~~q~~~~~l~~q~~~le~ 31 (110)
T TIGR02338 8 QLAQLQQLQQQLQAVATQKQQVEA 31 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 431
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=23.05 E-value=1.9e+02 Score=32.92 Aligned_cols=49 Identities=20% Similarity=0.355 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 696 LEDDLGKARSEIIALRSERDKLALEAEFAREKLDSVMREAEHQKVEVNGVL 746 (2058)
Q Consensus 696 L~eql~k~r~El~~LrsE~~K~s~q~e~a~ER~e~Lq~n~e~~r~E~~sL~ 746 (2058)
...+..+++.|+..++.|...+++|.+||+ |..++..++.+..|+..+.
T Consensus 38 ~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAk--waKl~Rk~~kl~~el~~~~ 86 (161)
T PF04420_consen 38 SSKEQRQLRKEILQLKRELNAISAQDEFAK--WAKLNRKLDKLEEELEKLN 86 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-TTTSHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 445556677788888888888899999997 7777666666666665554
No 432
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=23.04 E-value=1.3e+03 Score=27.42 Aligned_cols=191 Identities=18% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---h
Q 045447 26 AYIRYLQTDFETVKARADAAAITAEQTCSLLEQKFISLQEEFSKVESQNAQLQKSLDDRVNELAEVQSQKHQLHLQ---L 102 (2058)
Q Consensus 26 ~~i~~l~~el~t~KA~~e~~~i~aEQ~~~~lEqk~~sl~~e~~~le~e~~eL~~~l~~~~~Ela~~q~~~~~L~~~---~ 102 (2058)
.||.-|...-..-...++...-...++|..++.+-..+.+.| ...+..|+..|-++.++++.++.++..+..- -
T Consensus 4 ~~l~yL~~~~~e~~~~i~~L~~q~~~~~~~i~~~r~~l~s~y---~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k 80 (206)
T PF14988_consen 4 EFLEYLKKKDEEKEKKIEKLWKQYIQQLEEIQRERQELVSRY---AKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLK 80 (206)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 045447 103 IGKDGEIERLTMEVAELHKSRRQLMELVEQKDLQHSEKGATIKAY-LDKIINLTDNAAQR-EARLAETEAELARAQATCT 180 (2058)
Q Consensus 103 ~~~dseverLr~ei~eLe~ekr~ll~llErk~~e~eel~e~l~~l-~eKi~eL~~~~~~~-e~rl~e~es~~~s~k~~e~ 180 (2058)
..-+.+|.+|..++.....+-...+.-++.+ =+.++..-=+.+ ..++..+....... ..+.+.++.... .
T Consensus 81 ~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~q--fl~EK~~LEke~~e~~i~~l~e~a~~el~~k~~ale~~A~------~ 152 (206)
T PF14988_consen 81 EQQEREIQTLEEELEKMRAEHAEKLQEAESQ--FLQEKARLEKEASELKILQLGERAHKELKKKAQALELAAK------K 152 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhHHHhHHHhhHHHHHHHHHHHHHHH------H
Q ss_pred HhHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHhhhhhHHHHHhhHHHHHHH
Q 045447 181 RLTQGKELIERHNAWLNEELTSKVNSLVELRRTHADLEADMSAKLSDVERQ 231 (2058)
Q Consensus 181 RLeQE~eLLqknneWLe~ELk~KteEll~~Rre~~~~e~~l~aki~eLqre 231 (2058)
.+.--.--+...|.+|..+|...+.++..++..+.. |..+-..|+++
T Consensus 153 ~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~----Le~qk~~L~~e 199 (206)
T PF14988_consen 153 SLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQ----LEKQKQQLQQE 199 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
No 433
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.89 E-value=1.4e+03 Score=27.70 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045447 106 DGEIERLTMEVAELHKSRRQLMELVEQK 133 (2058)
Q Consensus 106 dseverLr~ei~eLe~ekr~ll~llErk 133 (2058)
-++++.|+..+.-+..++.++.++|-.+
T Consensus 99 q~elEvl~~n~Q~lkeE~dd~keiIs~k 126 (246)
T KOG4657|consen 99 QSELEVLRRNLQLLKEEKDDSKEIISQK 126 (246)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3466666666666666666665555333
No 434
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=22.72 E-value=7.3e+02 Score=24.28 Aligned_cols=48 Identities=21% Similarity=0.295 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 045447 481 ISEKSSLEKTIQELKADLRMRERDYYLAQKEISDLQKQVTVLLKECRD 528 (2058)
Q Consensus 481 ~~Erd~leke~r~a~~~l~~~eREn~~Lk~Ql~DLsrQV~vLL~Ev~~ 528 (2058)
+.-+..+..++.+.+...-.+++..+-...+..+|..+|..|-+++.+
T Consensus 10 irakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 10 IRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666777777777777777777777778888888888777765
No 435
>PF15456 Uds1: Up-regulated During Septation
Probab=22.65 E-value=9.1e+02 Score=26.64 Aligned_cols=28 Identities=21% Similarity=0.390 Sum_probs=20.2
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHhhh
Q 045447 1342 QRCRNIDVEDYDRLKVEVRQMEEKLSGK 1369 (2058)
Q Consensus 1342 eKy~riDPeE~e~Lk~Eie~Le~~L~~~ 1369 (2058)
..|+=..++|++.||.++..|...+...
T Consensus 14 ~~feiLs~eEVe~LKkEl~~L~~R~~~l 41 (124)
T PF15456_consen 14 KEFEILSFEEVEELKKELRSLDSRLEYL 41 (124)
T ss_pred HcCcccCHHHHHHHHHHHHHHHHHHHHH
Confidence 3577778889999998888776544333
No 436
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.46 E-value=2.7e+02 Score=25.48 Aligned_cols=27 Identities=19% Similarity=0.449 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 56 LEQKFISLQEEFSKVESQNAQLQKSLD 82 (2058)
Q Consensus 56 lEqk~~sl~~e~~~le~e~~eL~~~l~ 82 (2058)
+|..|..|++.|+.|..++..|..+.+
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~ 29 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENE 29 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777766655543
No 437
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=22.42 E-value=2.3e+03 Score=30.01 Aligned_cols=28 Identities=11% Similarity=0.302 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 52 TCSLLEQKFISLQEEFSKVESQNAQLQK 79 (2058)
Q Consensus 52 ~~~~lEqk~~sl~~e~~~le~e~~eL~~ 79 (2058)
+..-+++++..+..++...+.....++.
T Consensus 268 a~~fL~~qL~~l~~~L~~aE~~l~~fr~ 295 (726)
T PRK09841 268 SLEFLQRQLPEVRSELDQAEEKLNVYRQ 295 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445555555555555555544443
No 438
>PF06721 DUF1204: Protein of unknown function (DUF1204); InterPro: IPR009596 This family represents the C terminus of a number of Arabidopsis thaliana hypothetical proteins of unknown function. Family members contain a conserved DFD motif.
Probab=22.35 E-value=1.3e+03 Score=27.11 Aligned_cols=58 Identities=26% Similarity=0.348 Sum_probs=45.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045447 292 SEEWSRKAGELEGVIKALETQLAQVQNDCKEKLEKEVSAREQLEKEAMDLKEKLEKCEAEIES 354 (2058)
Q Consensus 292 aee~~~k~~ELe~~ikeLe~~L~q~e~~~~e~LEkE~~~~~~lEke~~eLkekl~~lE~Ele~ 354 (2058)
.+..+.|..+|++.+.+.+++|...+.+|.+- ..+..+++-++-++..|+.+...|+.
T Consensus 45 ~~~~~~K~deLedr~~se~KRLRsrR~~~AEn-----~rrs~L~kv~~l~QARidRvK~HiDd 102 (228)
T PF06721_consen 45 AEKMNVKFDELEDRISSEQKRLRSRRINYAEN-----NRRSALEKVASLYQARIDRVKAHIDD 102 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45667789999999999999999877777642 22556777777888999988888764
No 439
>PRK04406 hypothetical protein; Provisional
Probab=22.30 E-value=5.3e+02 Score=26.02 Aligned_cols=55 Identities=15% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 045447 468 DAYSAINQKLQNFISEKSSLEKTIQELKADLRMRERDYYLAQKEISDLQKQVTVL 522 (2058)
Q Consensus 468 ~~~~~Ls~~Leqa~~Erd~leke~r~a~~~l~~~eREn~~Lk~Ql~DLsrQV~vL 522 (2058)
+.+..|..++..+-.-..-.+..+..++..+...++++..|+.+++.|..++..+
T Consensus 4 ~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 4 KTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 440
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=22.24 E-value=7.1e+02 Score=30.47 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=29.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 045447 453 AGIILDERAEYERMVDAYSAINQKLQNFISEKSSLEKTIQELKADLRMRERDYYLAQKEISDLQKQVTVL 522 (2058)
Q Consensus 453 AP~L~eqR~EyErl~~~~~~Ls~~Leqa~~Erd~leke~r~a~~~l~~~eREn~~Lk~Ql~DLsrQV~vL 522 (2058)
.|||..||..+ +..+.+|-.++-....++..++ +|+..|+..-.-|=-.|++|
T Consensus 81 LpIVtsQRDRF---R~Rn~ELE~elr~~~~~~~~L~--------------~Ev~~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 81 LPIVTSQRDRF---RQRNAELEEELRKQQQTISSLR--------------REVESLRADNVKLYEKIRYL 133 (248)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 48999999844 5555555444444444444433 44444444444444567766
No 441
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=22.07 E-value=1.7e+03 Score=28.30 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=25.0
Q ss_pred hHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1193 SLQSVISFLRNRKSIAETEVALLTTEKLRLQKQLESALKAAENAQASL 1240 (2058)
Q Consensus 1193 ~L~eVI~yLRREKEIae~qlel~~qE~~RLqqQle~~qkqLdEar~~L 1240 (2058)
+|+.+|+.+|.|- |--.+.|-.|-+--+++.+..|++.+..|
T Consensus 84 elQr~nk~~keE~------~~q~k~eEerRkea~~~fqvtL~diqktl 125 (391)
T KOG1850|consen 84 ELQRANKQTKEEA------CAQMKKEEERRKEAVEQFQVTLKDIQKTL 125 (391)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 5666666666542 22234455555555677777777777666
No 442
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=22.05 E-value=5.2e+02 Score=25.61 Aligned_cols=41 Identities=20% Similarity=0.308 Sum_probs=17.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 045447 784 VSVLKHEKEMLSNAEQRAYDEVRSLSQR----VYRLQASLDTIQN 824 (2058)
Q Consensus 784 ~~nLKaEK~Llk~~E~RL~~EnesL~~e----~~rLqs~L~tiQs 824 (2058)
+.-|+.|+.+|+.-..-+..|+..|.+. ++++.+++..+.+
T Consensus 16 ~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~ 60 (65)
T TIGR02449 16 LERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKA 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3344444444444444444444444322 3344444444443
No 443
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=21.98 E-value=2.4e+03 Score=30.08 Aligned_cols=59 Identities=20% Similarity=0.272 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhhHHhhHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
Q 045447 23 KADAYIRYLQTDFETVKARA-DAAAITAEQTCSLLEQKF-------------ISLQEEFSKVESQNAQLQKSL 81 (2058)
Q Consensus 23 K~e~~i~~l~~el~t~KA~~-e~~~i~aEQ~~~~lEqk~-------------~sl~~e~~~le~e~~eL~~~l 81 (2058)
|...+|+-+.+=|-.+||.. +....+..-.+.++|.=+ ....--+.-|..+|+.|+-.|
T Consensus 331 kta~KVrt~KYLLgELkaLVaeq~DsE~qRLitEvE~cislLPav~g~tniq~EIALA~QplrsENaqLrRrL 403 (861)
T PF15254_consen 331 KTAEKVRTLKYLLGELKALVAEQEDSEVQRLITEVEACISLLPAVSGSTNIQVEIALAMQPLRSENAQLRRRL 403 (861)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhhccccchhhhHhhhhhhhhhhHHHHHHH
Confidence 44555666666666666632 222233344444555422 111122566788888887654
No 444
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=21.92 E-value=6.1e+02 Score=32.17 Aligned_cols=30 Identities=17% Similarity=0.327 Sum_probs=19.7
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Q 045447 1336 RVSELLQRCRNIDVEDYDRLKVEVRQMEEKL 1366 (2058)
Q Consensus 1336 R~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L 1366 (2058)
|.+.|. +-+-+...+|+..+.++...+..+
T Consensus 131 r~~~L~-~~g~is~~~~~~~~~~~~~~~~~~ 160 (370)
T PRK11578 131 RQQRLA-KTQAVSQQDLDTAATELAVKQAQI 160 (370)
T ss_pred HHHHHH-HcCCCCHHHHHHHHHHHHHHHHHH
Confidence 334444 457899999988877766555433
No 445
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=21.87 E-value=4.2e+02 Score=26.95 Aligned_cols=41 Identities=20% Similarity=0.249 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 045447 118 ELHKSRRQLMELVEQKDLQHSEKGATIKAYLDKIINLTDNA 158 (2058)
Q Consensus 118 eLe~ekr~ll~llErk~~e~eel~e~l~~l~eKi~eL~~~~ 158 (2058)
+|...+++|..-+..|..|+++|+.-+.+|..|++..+.-.
T Consensus 2 ~Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~Ln 42 (76)
T PF11544_consen 2 ELIKQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELN 42 (76)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667888888888888999999988888888887665433
No 446
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=21.79 E-value=9.8e+02 Score=27.37 Aligned_cols=102 Identities=21% Similarity=0.178 Sum_probs=61.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 045447 1345 RNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEK 1424 (2058)
Q Consensus 1345 ~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~ 1424 (2058)
+++||+..+..-.-.......|...+..+.. ...-+..++.++..|++.|.++ ...|+.
T Consensus 39 ~g~dne~id~imer~~~ieNdlg~~~~~~~g--------------~kk~~~~~~eelerLe~~iKdl-------~~lye~ 97 (157)
T COG3352 39 NGIDNEVIDAIMERMTDIENDLGKVKIEIEG--------------QKKQLQDIKEELERLEENIKDL-------VSLYEL 97 (157)
T ss_pred cCCChHHHHHHHHHHHHHHhhcccccccccc--------------hhhhHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 4678887777766666666555555444432 2334555666677777777777 777777
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccccC
Q 045447 1425 QKRISAQLRRKCEMLS-KEKEESIKENQSLARQLDDLKQGKKST 1467 (2058)
Q Consensus 1425 ~~~~~~~~k~~~e~~~-~e~~e~~~e~~~l~~q~~~~k~~~~~~ 1467 (2058)
+...+..++.++..-. -...++.++...+..-++..+.+.+.+
T Consensus 98 Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~~d~~~l 141 (157)
T COG3352 98 VSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVIKDLREL 141 (157)
T ss_pred HHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 7777777776555332 234555555555555555554444443
No 447
>KOG3293 consensus Small nuclear ribonucleoprotein (snRNP) [RNA processing and modification]
Probab=21.56 E-value=74 Score=34.29 Aligned_cols=6 Identities=67% Similarity=1.149 Sum_probs=2.7
Q ss_pred CCcccc
Q 045447 2040 RGRGVR 2045 (2058)
Q Consensus 2040 ~~~~~~ 2045 (2058)
+|++++
T Consensus 102 ~gng~~ 107 (134)
T KOG3293|consen 102 RGNGNR 107 (134)
T ss_pred CCCCCC
Confidence 444444
No 448
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=21.32 E-value=1.6e+03 Score=27.76 Aligned_cols=64 Identities=19% Similarity=0.266 Sum_probs=41.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhh
Q 045447 1302 CDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKN 1370 (2058)
Q Consensus 1302 lepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ 1370 (2058)
+..+...+..++..+...+..+...+.+.+||+. |.. -+-|...+|+..+..+..++..+....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~----L~~-~g~iS~~~~d~~~~~~~~a~~~l~~~~ 155 (327)
T TIGR02971 92 AAKLFKDVAAQQATLNRLEAELETAQREVDRYRS----LFR-DGAVSASDLDSKALKLRTAEEELEEAL 155 (327)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH-cCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555566655555555554 444 578999999999999888876554443
No 449
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=21.27 E-value=1.2e+03 Score=30.52 Aligned_cols=28 Identities=18% Similarity=0.359 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1305 LENLLRERQIEIEACKKEMEKQRMEKEN 1332 (2058)
Q Consensus 1305 Le~~i~el~~elE~~~~Ei~~LqeE~~R 1332 (2058)
+...+.+++.+|.-+++|+..|.+++.+
T Consensus 46 i~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 46 IKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555556667778888888777
No 450
>PF10384 Scm3: Centromere protein Scm3; InterPro: IPR018465 The centromere protein Scm3 is a non-histone component of centromeric chromatin that binds to CenH3-H4 histones, which are required for kinetochore assembly. Scm3 is required for Cse4 localisation and is required for its centromeric association [, ]. The histone H3 variant Cse4 replaces conventional histone H3 in centromeric chromatin and helps direct the assembly of the kinetochore. In addition, Scm3 has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for G2/M progression []. Scm3 is required to maintain kinetochore function throughout the cell cycle. Scm3 contains a nuclear export signal (NES). The N-terminal region of Scm3 is well conserved and functions as the CenH3-interacting domain, while the C-terminal region is variable in size and sometimes consists of DNA binding motifs [].; GO: 0005634 nucleus; PDB: 3R45_C 2YFV_C 2L5A_A.
Probab=21.18 E-value=1.1e+02 Score=29.43 Aligned_cols=22 Identities=9% Similarity=0.327 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC
Q 045447 1327 RMEKENLEKRVSELLQRCRNID 1348 (2058)
Q Consensus 1327 qeE~~RWkqR~q~LLeKy~riD 1348 (2058)
+.-..|.|.+.++|++||+++|
T Consensus 8 ~~s~~r~k~~~e~I~~KY~~~d 29 (58)
T PF10384_consen 8 KQSDQRFKSRWESIIEKYGQPD 29 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHCSG-
T ss_pred HHHHHHHHHHHHHHHHHhcCcc
Confidence 4445689999999999999974
No 451
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=20.96 E-value=9.1e+02 Score=24.72 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 945 EELEKLKEEAQANREHMLQYKSIAQVNEAALKEME 979 (2058)
Q Consensus 945 ~ELe~lkeeL~~Ak~qveQYK~IAqsaEeaL~~l~ 979 (2058)
..+..++.++....+++.++..--.-++.++..|.
T Consensus 5 ~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~ 39 (106)
T PF01920_consen 5 NKFQELNQQLQQLEQQIQQLERQLRELELTLEELE 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555554444444444555554
No 452
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=20.61 E-value=5.2e+02 Score=26.08 Aligned_cols=55 Identities=20% Similarity=0.307 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 045447 1320 KKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIE 1374 (2058)
Q Consensus 1320 ~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e 1374 (2058)
+..|..|+-|+=.||=|+--|=++-+..-|+.++.+-.+.-+|+.++..+..++.
T Consensus 6 e~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~ 60 (75)
T PF07989_consen 6 EEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQ 60 (75)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666667888887777777777787777776666666655544444443
No 453
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=20.44 E-value=1.1e+03 Score=29.16 Aligned_cols=37 Identities=22% Similarity=0.467 Sum_probs=27.6
Q ss_pred HHhHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHhhhh
Q 045447 180 TRLTQGKELIERHNAWLNEELTSKVNSLVELRRTHAD 216 (2058)
Q Consensus 180 ~RLeQE~eLLqknneWLe~ELk~KteEll~~Rre~~~ 216 (2058)
..+.....-+++++.||+.||...=..-...|.+.+.
T Consensus 205 ~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~~~ 241 (264)
T PF07246_consen 205 EELEARESGLRNESKWLEHELSDAKEDMIRLRNDISD 241 (264)
T ss_pred HHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3345555668889999999999877777777777543
No 454
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=20.37 E-value=1.5e+03 Score=27.12 Aligned_cols=112 Identities=18% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 045447 1388 SQLEQELANSRLELSEKEKRLSDIS--QAEAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLKQGKK 1465 (2058)
Q Consensus 1388 ~~l~~~L~~~~~e~~~le~k~~d~~--~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k~~~~ 1465 (2058)
..+..-+......+.....++||+. ..+..||..+..+...++..+..+...++............|+++-.|=+-++
T Consensus 5 ~~~~~~~d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~ 84 (207)
T PF05546_consen 5 KKLSFYMDSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKH 84 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q ss_pred cCCCc-------------chhHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 045447 1466 STGDV-------------TGEQVMKEKEEKDTRIQILERTVERQREELKK 1502 (2058)
Q Consensus 1466 ~~~~~-------------~~~q~~ke~~~~~~~~~~~~~~~e~~~~~~~~ 1502 (2058)
+=++. .+++...+.. ..++..+..++++.++|.+
T Consensus 85 sWs~~DleRFT~Lyr~dH~~e~~e~~ak---~~l~~aE~~~e~~~~~L~~ 131 (207)
T PF05546_consen 85 SWSPADLERFTELYRNDHENEQAEEEAK---EALEEAEEKVEEAFDDLMR 131 (207)
T ss_pred CCChHHHHHHHHHHHhhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHH
No 455
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=20.29 E-value=2.3e+03 Score=29.23 Aligned_cols=55 Identities=16% Similarity=0.082 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 24 ADAYIRYLQTDFETVKARADAAAITAEQTCSLLEQKFISLQEEFSKVESQNAQLQK 79 (2058)
Q Consensus 24 ~e~~i~~l~~el~t~KA~~e~~~i~aEQ~~~~lEqk~~sl~~e~~~le~e~~eL~~ 79 (2058)
+|.|.......++..+..+.+.+ +..+.+..+.++-.....+.+.|+-++.+|..
T Consensus 145 LD~f~~~~~~~~~~~~~~y~~w~-~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~ 199 (557)
T COG0497 145 LDAFAGLEELAQEAYQEAYQAWK-QARRELEDLQEKERERAQRADLLQFQLEELEE 199 (557)
T ss_pred HHHhcCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444433333333444444444 44444444445555555555555555555544
No 456
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=20.26 E-value=6.6e+02 Score=28.30 Aligned_cols=63 Identities=22% Similarity=0.230 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045447 687 EKMAERVRCLEDDLGKARSEIIALRSERDKLALEAEFAREKLDSVMREAEHQKVEVNGVLARN 749 (2058)
Q Consensus 687 ~q~~e~~k~L~eql~k~r~El~~LrsE~~K~s~q~e~a~ER~e~Lq~n~e~~r~E~~sL~~rn 749 (2058)
.++....+.|+.+++-....+..|+.++.+....++--.+.+..|..++.....++....++.
T Consensus 23 e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~ 85 (160)
T PF13094_consen 23 EQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKA 85 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445556677888888888888888888888766666666778888888888888777776653
No 457
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=20.22 E-value=2.4e+03 Score=29.34 Aligned_cols=37 Identities=14% Similarity=0.151 Sum_probs=28.3
Q ss_pred eeccCccchhhhhhHHHHHHHHHHHhhhhhhhhcCCC
Q 045447 1570 VQLLSGTNLDDHASSYFSAVESFERVARSVIVELGTC 1606 (2058)
Q Consensus 1570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1606 (2058)
.++.+.+--|+|..+.---..+|-+.+.-|..--|-+
T Consensus 285 slm~ane~kdr~ie~lr~~ln~y~k~~~iv~i~qg~~ 321 (861)
T KOG1899|consen 285 SLMRANEQKDRFIESLRNYLNNYDKNAQIVRILQGEP 321 (861)
T ss_pred HHHhhchhhhhHHHHHHHHhhhhhhhhhhhhhhcCCC
Confidence 4667777788888887778888888887777666655
No 458
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=20.06 E-value=56 Score=44.84 Aligned_cols=21 Identities=19% Similarity=0.124 Sum_probs=14.8
Q ss_pred CCCCCCCCCCccccCCCCCCC
Q 045447 1740 QGEPSSDVPAPVLKKSKLPDS 1760 (2058)
Q Consensus 1740 ~~~~~~~~~~~~~~~~~~~~~ 1760 (2058)
+.---+||--|-.|-|-++.|
T Consensus 1322 ~~d~~sdvh~~r~k~p~fSSF 1342 (1516)
T KOG1832|consen 1322 IEDVMSDVHTRRVKHPLFSSF 1342 (1516)
T ss_pred hhhhhhhhcccccccchhhhh
Confidence 333457888888888888644
No 459
>PRK11677 hypothetical protein; Provisional
Probab=20.04 E-value=3.7e+02 Score=29.96 Aligned_cols=47 Identities=15% Similarity=0.324 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHH
Q 045447 1064 KEDLEKEHERRQAAQANYERQVILQ-SETIQELTKTSQALASLQEQAS 1110 (2058)
Q Consensus 1064 ~~DL~~Q~~~a~eAQ~nYErElvLH-Ae~IqeL~k~~e~~~~lq~e~~ 1110 (2058)
+.+|+.+.+.++..-..|.+||.-| +.+..-|.++.+.+..|.+-+.
T Consensus 31 q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~Ly~HlA 78 (134)
T PRK11677 31 QQALQYELEKNKAELEEYRQELVSHFARSAELLDTMAKDYRQLYQHMA 78 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777888999999999 5666667777777777655553
Done!