Query 045447
Match_columns 2058
No_of_seqs 158 out of 177
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 23:38:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045447.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045447hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 98.5 0.0031 1.1E-07 71.1 42.7 15 29-43 9-23 (284)
2 1c1g_A Tropomyosin; contractIl 98.4 0.0047 1.6E-07 69.6 43.5 19 336-354 258-276 (284)
3 1i84_S Smooth muscle myosin he 97.9 1.4E-05 4.8E-10 110.6 10.4 21 334-354 1142-1162(1184)
4 1i84_S Smooth muscle myosin he 97.7 4.8E-05 1.6E-09 105.3 10.0 19 907-925 662-680 (1184)
5 2v71_A Nuclear distribution pr 97.2 0.04 1.4E-06 61.2 22.3 104 952-1055 10-113 (189)
6 2v71_A Nuclear distribution pr 97.0 0.095 3.3E-06 58.2 23.5 96 957-1052 8-103 (189)
7 3na7_A HP0958; flagellar bioge 96.7 0.096 3.3E-06 60.9 21.5 82 1286-1373 32-113 (256)
8 3na7_A HP0958; flagellar bioge 94.7 7.1 0.00024 45.3 26.0 73 1365-1437 12-84 (256)
9 3o0z_A RHO-associated protein 94.5 5.4 0.00018 43.6 22.3 18 1074-1091 145-162 (168)
10 2jee_A YIIU; FTSZ, septum, coi 94.3 0.21 7.2E-06 48.4 9.7 43 1305-1347 39-81 (81)
11 2dfs_A Myosin-5A; myosin-V, in 92.9 1.1 3.8E-05 61.8 17.1 27 1303-1329 924-950 (1080)
12 3vkg_A Dynein heavy chain, cyt 92.8 15 0.00051 55.9 29.4 89 1353-1441 2010-2098(3245)
13 2dfs_A Myosin-5A; myosin-V, in 92.3 2 6.9E-05 59.3 18.3 15 968-982 923-937 (1080)
14 2fxo_A Myosin heavy chain, car 91.7 6.1 0.00021 41.5 17.2 86 1379-1464 14-99 (129)
15 3vkg_A Dynein heavy chain, cyt 90.4 23 0.0008 53.9 27.2 16 2006-2021 3011-3026(3245)
16 2fxo_A Myosin heavy chain, car 90.2 11 0.00037 39.5 17.4 35 1377-1411 54-88 (129)
17 3oja_B Anopheles plasmodium-re 90.2 2.3 7.9E-05 54.4 15.0 74 1389-1462 506-579 (597)
18 2v66_B Nuclear distribution pr 89.9 12 0.00043 38.3 16.8 102 57-203 2-103 (111)
19 3oja_B Anopheles plasmodium-re 89.6 1.7 5.8E-05 55.7 13.1 11 1193-1203 400-410 (597)
20 3o0z_A RHO-associated protein 89.2 29 0.001 38.0 21.5 96 46-162 43-138 (168)
21 3u1c_A Tropomyosin alpha-1 cha 85.1 22 0.00074 35.9 15.2 59 1401-1459 39-97 (101)
22 3hnw_A Uncharacterized protein 84.1 6.7 0.00023 41.7 11.6 87 1325-1411 29-129 (138)
23 3s84_A Apolipoprotein A-IV; fo 81.3 91 0.0031 36.6 25.9 40 1526-1565 212-252 (273)
24 2ocy_A RAB guanine nucleotide 80.8 67 0.0023 34.8 18.2 38 147-184 4-41 (154)
25 3hnw_A Uncharacterized protein 80.3 20 0.00069 38.1 13.4 89 438-526 33-133 (138)
26 2eqb_B RAB guanine nucleotide 79.9 22 0.00076 35.7 12.6 54 1351-1404 6-59 (97)
27 3u59_A Tropomyosin beta chain; 79.4 47 0.0016 33.3 15.2 57 1403-1459 41-97 (101)
28 2v4h_A NF-kappa-B essential mo 79.2 7.2 0.00025 39.8 9.0 97 1339-1460 13-109 (110)
29 2efr_A General control protein 78.6 79 0.0027 34.3 23.0 46 1291-1336 26-71 (155)
30 2v66_B Nuclear distribution pr 77.6 68 0.0023 33.0 16.3 83 692-777 4-86 (111)
31 2jee_A YIIU; FTSZ, septum, coi 77.2 14 0.00048 36.0 10.0 59 1401-1459 8-66 (81)
32 3tnu_A Keratin, type I cytoske 74.6 17 0.00057 38.2 10.8 27 1348-1374 29-55 (131)
33 3s4r_A Vimentin; alpha-helix, 74.0 21 0.00072 35.5 10.7 83 52-150 10-92 (93)
34 3u1c_A Tropomyosin alpha-1 cha 73.6 79 0.0027 31.8 15.8 55 735-789 39-93 (101)
35 2e7s_A RAB guanine nucleotide 73.6 8.8 0.0003 40.6 8.2 34 1429-1462 98-131 (135)
36 1x79_B RAB GTPase binding effe 73.5 52 0.0018 33.9 13.6 72 277-355 25-96 (112)
37 1x79_B RAB GTPase binding effe 72.6 30 0.001 35.6 11.6 25 1350-1374 6-30 (112)
38 3mq7_A Bone marrow stromal ant 72.5 68 0.0023 33.1 13.9 80 1286-1379 21-100 (121)
39 3a7p_A Autophagy protein 16; c 72.5 39 0.0013 36.4 12.9 109 22-143 38-147 (152)
40 3ghg_A Fibrinogen alpha chain; 71.4 19 0.00066 45.2 11.8 18 1346-1363 172-189 (562)
41 3tnu_B Keratin, type II cytosk 71.4 45 0.0015 34.8 13.1 81 735-825 45-125 (129)
42 3ol1_A Vimentin; structural ge 70.6 67 0.0023 33.2 14.0 19 996-1014 18-36 (119)
43 3ol1_A Vimentin; structural ge 70.5 70 0.0024 33.1 14.1 94 1399-1507 20-113 (119)
44 2ocy_A RAB guanine nucleotide 70.3 1.3E+02 0.0043 32.7 20.0 38 1427-1464 108-145 (154)
45 3tnu_B Keratin, type II cytosk 67.7 33 0.0011 35.8 11.2 46 1329-1375 8-54 (129)
46 3tnu_A Keratin, type I cytoske 67.0 61 0.0021 34.0 13.0 27 800-826 102-128 (131)
47 3bas_A Myosin heavy chain, str 66.0 52 0.0018 32.4 11.5 70 1381-1457 17-86 (89)
48 3a7p_A Autophagy protein 16; c 63.8 50 0.0017 35.6 11.5 65 1276-1340 72-140 (152)
49 3ghg_A Fibrinogen alpha chain; 63.7 55 0.0019 41.3 13.5 26 558-583 406-431 (562)
50 4gkw_A Spindle assembly abnorm 60.7 1.7E+02 0.0057 30.7 16.4 86 1403-1500 43-128 (167)
51 3qh9_A Liprin-beta-2; coiled-c 59.4 57 0.0019 31.7 9.8 49 995-1054 23-71 (81)
52 3q8t_A Beclin-1; autophagy, AT 59.3 1.5E+02 0.0051 29.7 13.6 15 1350-1364 4-18 (96)
53 3mq9_A Bone marrow stromal ant 59.1 2E+02 0.0067 35.7 18.0 113 1333-1461 357-470 (471)
54 3u59_A Tropomyosin beta chain; 56.8 1.6E+02 0.0056 29.4 15.8 51 738-788 42-92 (101)
55 3swk_A Vimentin; cytoskeleton, 56.2 60 0.002 31.9 9.9 82 1309-1419 2-83 (86)
56 1a93_B MAX protein, coiled coi 55.5 14 0.00047 30.5 4.2 27 1138-1164 6-32 (34)
57 3jsv_C NF-kappa-B essential mo 55.2 56 0.0019 32.6 9.4 74 1378-1462 16-89 (94)
58 2oto_A M protein; helical coil 55.2 2.2E+02 0.0076 30.4 17.2 13 1354-1366 26-38 (155)
59 2eqb_B RAB guanine nucleotide 54.7 1.4E+02 0.0046 30.2 12.1 51 94-144 13-63 (97)
60 1go4_E MAD1 (mitotic arrest de 54.0 10 0.00035 38.3 4.1 75 1266-1340 13-94 (100)
61 1ic2_A Tropomyosin alpha chain 53.8 27 0.00092 33.7 7.0 26 1319-1344 4-29 (81)
62 3bas_A Myosin heavy chain, str 53.8 1.6E+02 0.0053 29.0 12.5 50 1120-1169 37-86 (89)
63 3mq9_A Bone marrow stromal ant 53.0 1.8E+02 0.0061 36.0 16.2 66 1100-1172 404-469 (471)
64 3oja_A Leucine-rich immune mol 52.9 1.5E+02 0.0051 37.0 15.5 26 1137-1162 461-486 (487)
65 3trt_A Vimentin; cytoskeleton, 49.9 1.2E+02 0.004 28.7 10.6 65 455-528 10-74 (77)
66 3q8t_A Beclin-1; autophagy, AT 49.1 1.6E+02 0.0056 29.4 11.9 16 1439-1454 65-80 (96)
67 3nmd_A CGMP dependent protein 48.4 33 0.0011 32.7 6.3 45 1290-1334 23-67 (72)
68 3s4r_A Vimentin; alpha-helix, 47.8 2.1E+02 0.0072 28.4 12.4 37 135-171 9-45 (93)
69 3swk_A Vimentin; cytoskeleton, 47.0 1.6E+02 0.0055 28.9 11.2 28 500-527 53-80 (86)
70 3s9g_A Protein hexim1; cyclin 46.7 64 0.0022 32.3 8.2 40 1306-1345 64-103 (104)
71 1gk4_A Vimentin; intermediate 46.7 2.1E+02 0.0072 27.8 12.0 26 1035-1060 45-70 (84)
72 2v4h_A NF-kappa-B essential mo 46.6 2.3E+02 0.0078 29.1 12.3 77 1387-1463 26-105 (110)
73 2b9c_A Striated-muscle alpha t 45.8 2.3E+02 0.0077 30.5 13.2 51 1034-1084 84-137 (147)
74 1ic2_A Tropomyosin alpha chain 45.1 1.8E+02 0.0063 27.9 11.3 40 733-772 34-73 (81)
75 3i00_A HIP-I, huntingtin-inter 44.0 1.6E+02 0.0056 30.6 11.3 51 25-75 14-64 (120)
76 1cii_A Colicin IA; bacteriocin 43.8 4.3E+02 0.015 33.0 16.2 48 1372-1419 371-418 (602)
77 1go4_E MAD1 (mitotic arrest de 43.7 83 0.0028 31.8 8.7 55 1315-1369 13-87 (100)
78 3s9g_A Protein hexim1; cyclin 43.3 92 0.0031 31.3 8.7 59 410-468 28-86 (104)
79 2zqm_A Prefoldin beta subunit 41.2 2E+02 0.0067 28.9 11.5 23 1415-1437 72-94 (117)
80 2zqm_A Prefoldin beta subunit 40.5 2.9E+02 0.01 27.6 12.6 40 940-979 8-47 (117)
81 3cvf_A Homer-3, homer protein 40.4 75 0.0026 30.9 7.5 47 53-99 8-54 (79)
82 3mq7_A Bone marrow stromal ant 39.3 3.5E+02 0.012 28.1 13.8 43 1419-1461 70-112 (121)
83 3cvf_A Homer-3, homer protein 38.9 78 0.0027 30.8 7.4 64 466-529 4-67 (79)
84 2oto_A M protein; helical coil 38.3 4E+02 0.014 28.5 17.8 10 1274-1283 24-33 (155)
85 2w83_C C-JUN-amino-terminal ki 37.9 1.9E+02 0.0064 28.0 9.5 70 111-201 6-75 (77)
86 1jcd_A Major outer membrane li 37.8 1.3E+02 0.0044 27.1 8.0 44 687-730 7-50 (52)
87 2k48_A Nucleoprotein; viral pr 37.1 1.1E+02 0.0036 31.1 8.2 30 1344-1373 26-58 (107)
88 1deq_A Fibrinogen (alpha chain 35.9 1.9E+02 0.0067 35.3 11.7 107 415-524 84-190 (390)
89 1x8y_A Lamin A/C; structural p 35.8 1.7E+02 0.0058 28.6 9.5 29 1033-1061 45-73 (86)
90 3cve_A Homer protein homolog 1 35.1 2.1E+02 0.0072 27.4 9.5 27 59-85 8-34 (72)
91 1m1j_B Fibrinogen beta chain; 35.0 3E+02 0.01 34.8 13.7 9 1338-1346 88-96 (464)
92 3k29_A Putative uncharacterize 34.8 4.9E+02 0.017 28.5 15.0 34 1360-1396 33-66 (169)
93 1deq_A Fibrinogen (alpha chain 34.5 4.3E+02 0.015 32.4 14.3 24 1336-1366 53-76 (390)
94 3hhm_B NISH2 P85alpha; PI3KCA, 33.8 5E+02 0.017 31.8 15.3 109 412-524 140-261 (373)
95 1l8d_A DNA double-strand break 32.9 3.1E+02 0.011 27.4 11.3 20 1439-1458 83-102 (112)
96 1jcd_A Major outer membrane li 32.7 1.1E+02 0.0037 27.6 6.8 40 1301-1340 12-51 (52)
97 1fxk_A Prefoldin; archaeal pro 32.5 2.4E+02 0.0081 27.9 10.3 12 1353-1364 11-22 (107)
98 2dnx_A Syntaxin-12; snare, HAB 32.2 3.2E+02 0.011 28.5 11.6 108 1347-1461 7-118 (130)
99 2efr_A General control protein 32.0 5.2E+02 0.018 28.0 25.3 80 722-804 38-117 (155)
100 2yy0_A C-MYC-binding protein; 32.0 44 0.0015 30.1 4.2 35 1346-1380 15-49 (53)
101 3mov_A Lamin-B1; LMNB1, B-type 32.0 1.4E+02 0.0047 29.9 8.2 24 993-1016 14-37 (95)
102 3l4q_C Phosphatidylinositol 3- 30.6 5.8E+02 0.02 28.1 16.8 46 110-155 99-144 (170)
103 3l4q_C Phosphatidylinositol 3- 30.4 1.9E+02 0.0064 31.9 9.6 113 413-525 32-153 (170)
104 2w6a_A ARF GTPase-activating p 29.7 1.5E+02 0.0052 27.2 7.1 49 462-510 14-62 (63)
105 1fxk_A Prefoldin; archaeal pro 29.5 4.2E+02 0.014 26.1 12.7 40 940-979 3-42 (107)
106 3oja_A Leucine-rich immune mol 29.5 7.6E+02 0.026 30.5 16.6 44 1418-1461 426-469 (487)
107 1wt6_A Myotonin-protein kinase 29.3 3.1E+02 0.011 26.7 9.7 47 1416-1462 27-73 (81)
108 3swf_A CGMP-gated cation chann 28.4 1.2E+02 0.0043 29.0 6.7 47 969-1015 3-49 (74)
109 3jsv_C NF-kappa-B essential mo 28.4 3.6E+02 0.012 27.0 10.2 77 1388-1464 5-84 (94)
110 3mov_A Lamin-B1; LMNB1, B-type 28.2 2.4E+02 0.0084 28.1 9.3 29 570-598 12-40 (95)
111 3iv1_A Tumor susceptibility ge 28.1 4.2E+02 0.015 25.7 11.8 59 793-858 4-62 (78)
112 4fla_A Regulation of nuclear P 28.1 4.7E+02 0.016 28.2 12.2 54 1384-1440 81-134 (152)
113 3i00_A HIP-I, huntingtin-inter 27.9 3.9E+02 0.013 27.8 11.1 45 974-1018 16-60 (120)
114 2oqq_A Transcription factor HY 27.8 1E+02 0.0035 26.5 5.3 32 985-1016 4-35 (42)
115 2wt7_B Transcription factor MA 27.2 3E+02 0.01 27.3 9.5 40 1301-1340 49-88 (90)
116 2efl_A Formin-binding protein 26.8 7.6E+02 0.026 28.2 19.6 31 1063-1093 191-222 (305)
117 1m1j_C Fibrinogen gamma chain; 26.0 1.9E+02 0.0065 35.9 9.8 44 1419-1462 90-133 (409)
118 1t3j_A Mitofusin 1; coiled coi 25.8 2E+02 0.0068 29.0 8.0 60 1389-1448 29-92 (96)
119 3swy_A Cyclic nucleotide-gated 25.3 2.2E+02 0.0076 25.1 7.2 42 971-1012 3-44 (46)
120 3cve_A Homer protein homolog 1 25.3 3.5E+02 0.012 25.9 9.2 58 472-529 4-61 (72)
121 3trt_A Vimentin; cytoskeleton, 25.2 3.2E+02 0.011 25.7 9.2 44 877-920 31-74 (77)
122 2i1j_A Moesin; FERM, coiled-co 24.7 2.3E+02 0.0077 36.7 10.6 164 1267-1450 281-456 (575)
123 4fla_A Regulation of nuclear P 23.9 6E+02 0.02 27.4 12.0 74 8-81 68-144 (152)
124 3iv1_A Tumor susceptibility ge 23.9 2.7E+02 0.0093 27.0 8.2 52 105-156 23-74 (78)
125 3abh_A Pacsin2, protein kinase 23.7 8.5E+02 0.029 28.2 14.7 39 1058-1096 206-244 (312)
126 1m1j_C Fibrinogen gamma chain; 23.5 5E+02 0.017 32.2 12.9 48 476-523 85-132 (409)
127 3r45_C Holliday junction recog 23.5 61 0.0021 30.9 3.6 23 1324-1346 21-43 (81)
128 4dzn_A Coiled-coil peptide CC- 23.5 1E+02 0.0035 24.3 4.2 23 1441-1463 9-31 (33)
129 3htk_A Structural maintenance 23.0 3.3E+02 0.011 24.3 8.5 50 52-101 6-55 (60)
130 1wt6_A Myotonin-protein kinase 22.9 5.3E+02 0.018 25.2 9.9 41 474-514 30-70 (81)
131 2no2_A HIP-I, huntingtin-inter 22.6 6.2E+02 0.021 25.7 15.2 56 1436-1502 17-72 (107)
132 3etw_A Adhesin A; antiparallel 22.3 6.8E+02 0.023 26.1 12.1 56 952-1007 34-91 (119)
133 1deb_A APC protein, adenomatou 22.2 1.6E+02 0.0055 26.2 5.7 50 1257-1309 5-54 (54)
134 3nmd_A CGMP dependent protein 22.2 1.7E+02 0.0058 28.0 6.3 46 1352-1397 21-66 (72)
135 3sja_C Golgi to ER traffic pro 21.4 1.2E+02 0.0041 28.5 5.1 45 698-744 6-50 (65)
136 4dnd_A Syntaxin-10, SYN10; str 21.2 7.3E+02 0.025 26.0 12.3 27 982-1008 65-91 (130)
137 1l8d_A DNA double-strand break 21.0 6.2E+02 0.021 25.1 13.1 43 1128-1170 60-102 (112)
138 3hhm_B NISH2 P85alpha; PI3KCA, 20.9 8.4E+02 0.029 29.8 14.0 106 1351-1461 141-246 (373)
139 2yy0_A C-MYC-binding protein; 20.5 1.1E+02 0.0036 27.6 4.5 29 1135-1163 22-50 (53)
140 2a01_A Apolipoprotein A-I; fou 20.4 5.1E+02 0.018 29.6 11.5 208 1234-1460 13-232 (243)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.46 E-value=0.0031 Score=71.13 Aligned_cols=15 Identities=40% Similarity=0.457 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 045447 29 RYLQTDFETVKARAD 43 (2058)
Q Consensus 29 ~~l~~el~t~KA~~e 43 (2058)
..+..+++.+....+
T Consensus 9 ~~l~~~~~~~~~~~~ 23 (284)
T 1c1g_A 9 QMLKLDKENALDRAD 23 (284)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHH
Confidence 334455554444443
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.44 E-value=0.0047 Score=69.65 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 045447 336 KEAMDLKEKLEKCEAEIES 354 (2058)
Q Consensus 336 ke~~eLkekl~~lE~Ele~ 354 (2058)
..+..+...+..+..++++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~ 276 (284)
T 1c1g_A 258 DELYAQKLKYKAISEELDH 276 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444555444443
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.93 E-value=1.4e-05 Score=110.59 Aligned_cols=21 Identities=43% Similarity=0.585 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 045447 334 LEKEAMDLKEKLEKCEAEIES 354 (2058)
Q Consensus 334 lEke~~eLkekl~~lE~Ele~ 354 (2058)
++.+..++...+..+...|+.
T Consensus 1142 le~q~~~L~~ele~L~~~Iee 1162 (1184)
T 1i84_S 1142 AEKQKRDLSEELEALKTELED 1162 (1184)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555554443
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.72 E-value=4.8e-05 Score=105.34 Aligned_cols=19 Identities=11% Similarity=0.186 Sum_probs=11.7
Q ss_pred HHHHHHHHHhhcccccCCc
Q 045447 907 AETKLSDMEKRIRPLDAKG 925 (2058)
Q Consensus 907 le~rv~~Le~kL~~~~~k~ 925 (2058)
-...+..|-..|.+..++.
T Consensus 662 f~~~l~~L~~~l~~t~phf 680 (1184)
T 1i84_S 662 YKEQLTKLMTTLRNTNPNF 680 (1184)
T ss_dssp HHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHhcCCCc
Confidence 3445566666777766654
No 5
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.18 E-value=0.04 Score=61.15 Aligned_cols=104 Identities=13% Similarity=0.130 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHH
Q 045447 952 EEAQANREHMLQYKSIAQVNEAALKEMETVHENFRTRVEGVKKSLEDELHSLRKRVSELERENILKSEEIASAAGVREDA 1031 (2058)
Q Consensus 952 eeL~~Ak~qveQYK~IAqsaEeaL~~l~~~~e~yK~e~E~~l~e~e~ei~~L~~ri~eLe~El~~~~eE~~~~~~~~e~q 1031 (2058)
+++..=|..+.+|+.....++..|.++....-+|-.++|..+..++..+..|+.++.-|..++......+.........+
T Consensus 10 ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~ 89 (189)
T 2v71_A 10 EETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQ 89 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567777888888888888888888888888888888888888888888888888887766555554443333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1032 LASAREEITSLKEERSIKISQIVN 1055 (2058)
Q Consensus 1032 l~~l~~El~~Lk~E~~~~~~~~~~ 1055 (2058)
+..+..+|+.|+.........+..
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ire 113 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRE 113 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666554444444333
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.03 E-value=0.095 Score=58.23 Aligned_cols=96 Identities=16% Similarity=0.208 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHH
Q 045447 957 NREHMLQYKSIAQVNEAALKEMETVHENFRTRVEGVKKSLEDELHSLRKRVSELERENILKSEEIASAAGVREDALASAR 1036 (2058)
Q Consensus 957 Ak~qveQYK~IAqsaEeaL~~l~~~~e~yK~e~E~~l~e~e~ei~~L~~ri~eLe~El~~~~eE~~~~~~~~e~ql~~l~ 1036 (2058)
....+..||..+...-..+..+...++.|...+-..-.+++.+|..+.+++.+|...+.....++.....++......+.
T Consensus 8 ~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~ 87 (189)
T 2v71_A 8 LKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSY 87 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999999999999999988889999999999999999999887777777666665555555555
Q ss_pred HHHHHHHHHHHHHHHH
Q 045447 1037 EEITSLKEERSIKISQ 1052 (2058)
Q Consensus 1037 ~El~~Lk~E~~~~~~~ 1052 (2058)
..++.|+.++......
T Consensus 88 ~~~~~Lq~el~~l~~~ 103 (189)
T 2v71_A 88 KQVSVLEDDLSQTRAI 103 (189)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666664444333
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.70 E-value=0.096 Score=60.92 Aligned_cols=82 Identities=16% Similarity=0.211 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 045447 1286 EECQKLREVAQKTKSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEK 1365 (2058)
Q Consensus 1286 ~k~qkL~e~lqk~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~ 1365 (2058)
.++..++..+..++..+..+...+..+..++..++.++..++.-.++|++|... -.+|-||..|..+|+.++..
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~------v~~~kE~~aL~kEie~~~~~ 105 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE------IKSERELRSLNIEEDIAKER 105 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CSSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------cCCHHHHHHHHHHHHHHHHH
Confidence 445556666666666677777777777777777788888888888899988532 23999999999999988764
Q ss_pred HhhhhHHH
Q 045447 1366 LSGKNAEI 1373 (2058)
Q Consensus 1366 L~~~~ae~ 1373 (2058)
...+..++
T Consensus 106 i~~lE~ei 113 (256)
T 3na7_A 106 SNQANREI 113 (256)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44443333
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.70 E-value=7.1 Score=45.30 Aligned_cols=73 Identities=11% Similarity=0.160 Sum_probs=42.6
Q ss_pred HHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1365 KLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQKRISAQLRRKCE 1437 (2058)
Q Consensus 1365 ~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e 1437 (2058)
.|+..+.++.++...+.+....+..|+..+......+..+...+.++......+..+++..+..++.++.++.
T Consensus 12 ~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~ 84 (256)
T 3na7_A 12 EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMS 84 (256)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666666666666666666655555555555555555555554443
No 9
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.48 E-value=5.4 Score=43.64 Aligned_cols=18 Identities=22% Similarity=0.159 Sum_probs=14.3
Q ss_pred HHHHHHhHHHHHHhhHHH
Q 045447 1074 RQAAQANYERQVILQSET 1091 (2058)
Q Consensus 1074 a~eAQ~nYErElvLHAe~ 1091 (2058)
.+.+|+.|++|+.-|=+|
T Consensus 145 LKalQ~~~eqE~~~H~~T 162 (168)
T 3o0z_A 145 LKSLQQRLEQEVNEHKVT 162 (168)
T ss_dssp HHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 468999999998888655
No 10
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=94.29 E-value=0.21 Score=48.38 Aligned_cols=43 Identities=19% Similarity=0.328 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 045447 1305 LENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNI 1347 (2058)
Q Consensus 1305 Le~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~ri 1347 (2058)
|.....++....+.+..++..|+.|...|+.|...||-|.+.|
T Consensus 39 L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e~v 81 (81)
T 2jee_A 39 LSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEEV 81 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 3344455556666788999999999999999999999997654
No 11
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.91 E-value=1.1 Score=61.81 Aligned_cols=27 Identities=26% Similarity=0.204 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1303 DNLENLLRERQIEIEACKKEMEKQRME 1329 (2058)
Q Consensus 1303 epLe~~i~el~~elE~~~~Ei~~LqeE 1329 (2058)
..|++.|.+|+..++....++..|++.
T Consensus 924 ~~LE~kl~eLq~rL~~~e~~n~~L~~~ 950 (1080)
T 2dfs_A 924 IGLENKIMQLQRKIDEQNKEYKSLLEK 950 (1080)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555544444
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.79 E-value=15 Score=55.90 Aligned_cols=89 Identities=13% Similarity=0.148 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1353 DRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQKRISAQL 1432 (2058)
Q Consensus 1353 e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~ 1432 (2058)
+=++.++..++++|....+.+...++.|...+..+..|+++......+...++.++............=+..+-.+-..|
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW 2089 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRW 2089 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccH
Confidence 45666666666666666666666666666666666666666666666665555554444444444444444444555555
Q ss_pred HHHHHHHHH
Q 045447 1433 RRKCEMLSK 1441 (2058)
Q Consensus 1433 k~~~e~~~~ 1441 (2058)
......+..
T Consensus 2090 ~~~~~~l~~ 2098 (3245)
T 3vkg_A 2090 EQQSENFNT 2098 (3245)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554443
No 13
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.25 E-value=2 Score=59.29 Aligned_cols=15 Identities=7% Similarity=-0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH
Q 045447 968 AQVNEAALKEMETVH 982 (2058)
Q Consensus 968 AqsaEeaL~~l~~~~ 982 (2058)
....|..|.+|+...
T Consensus 923 ~~~LE~kl~eLq~rL 937 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKI 937 (1080)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 334455555554433
No 14
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=91.72 E-value=6.1 Score=41.46 Aligned_cols=86 Identities=16% Similarity=0.298 Sum_probs=70.7
Q ss_pred hhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1379 LLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLD 1458 (2058)
Q Consensus 1379 ~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~ 1458 (2058)
.+......|..|+..|......+..++.++..+.++.+.|..++..-+..++..-..+..+.+.+.+|...+..+...++
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rle 93 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLE 93 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666778888888888888899999999989999999999988888888888888888888888888888888887
Q ss_pred HHhccc
Q 045447 1459 DLKQGK 1464 (2058)
Q Consensus 1459 ~~k~~~ 1464 (2058)
+....+
T Consensus 94 eeee~~ 99 (129)
T 2fxo_A 94 DEEEMN 99 (129)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766444
No 15
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.44 E-value=23 Score=53.95 Aligned_cols=16 Identities=13% Similarity=0.007 Sum_probs=9.4
Q ss_pred ceechhHHHHHHHHHH
Q 045447 2006 HIVNLRERARERAMQR 2021 (2058)
Q Consensus 2006 ~~~~~~~~~~~~~~~~ 2021 (2058)
.+|=++|--|.++-.+
T Consensus 3011 ~~vl~QE~~r~n~Ll~ 3026 (3245)
T 3vkg_A 3011 FRCFEREISTGGKLVK 3026 (3245)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455667777665544
No 16
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=90.17 E-value=11 Score=39.52 Aligned_cols=35 Identities=9% Similarity=0.150 Sum_probs=17.4
Q ss_pred HhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhH
Q 045447 1377 RNLLSTKLDTISQLEQELANSRLELSEKEKRLSDI 1411 (2058)
Q Consensus 1377 ~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~ 1411 (2058)
...|...........+.+.........|+.++.++
T Consensus 54 ~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el 88 (129)
T 2fxo_A 54 QLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEM 88 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555555555555555555
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.16 E-value=2.3 Score=54.44 Aligned_cols=74 Identities=12% Similarity=0.141 Sum_probs=48.4
Q ss_pred HHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 045447 1389 QLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLKQ 1462 (2058)
Q Consensus 1389 ~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k~ 1462 (2058)
.+++...........++.++....+..+..+.+++.+++....++++++..++...++.++++.+.+++.++.+
T Consensus 506 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 506 NLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555666666666666677777777777777777777777777777777777777766663
No 18
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=89.89 E-value=12 Score=38.35 Aligned_cols=102 Identities=18% Similarity=0.229 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 045447 57 EQKFISLQEEFSKVESQNAQLQKSLDDRVNELAEVQSQKHQLHLQLIGKDGEIERLTMEVAELHKSRRQLMELVEQKDLQ 136 (2058)
Q Consensus 57 Eqk~~sl~~e~~~le~e~~eL~~~l~~~~~Ela~~q~~~~~L~~~~~~~dseverLr~ei~eLe~ekr~ll~llErk~~e 136 (2058)
|++..+|..++..|.-++..++..+....+ ...+.+.+|..+|..|...++.+..-| .+
T Consensus 2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~-----------------e~~~~~~~Lq~El~~lr~~~~~l~~~i----Re 60 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYEVEALKEKLEHQYA-----------------QSYKQVSVLEDDLSQTRAIKEQLHKYV----RE 60 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 467777877787777777777766543222 223456677777777777777766544 33
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhhh
Q 045447 137 HSEKGATIKAYLDKIINLTDNAAQREARLAETEAELARAQATCTRLTQGKELIERHNAWLNEELTSK 203 (2058)
Q Consensus 137 ~eel~e~l~~l~eKi~eL~~~~~~~e~rl~e~es~~~s~k~~e~RLeQE~eLLqknneWLe~ELk~K 203 (2058)
++-.|++|.+.+ ...-..|.. ++.-....--.|.||+.||.-|
T Consensus 61 LEq~NDDLER~~----------R~t~~SLeD--------------~E~k~n~aiErnalLE~El~EK 103 (111)
T 2v66_B 61 LEQANDDLERAK----------RATIVSLED--------------FEQRLNQAIERNAFLESELDEK 103 (111)
T ss_dssp HHHHHHHHHHHH----------HHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhchHHHHHH----------HHHHhhHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 333444443322 111112222 2223333445789999999854
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.60 E-value=1.7 Score=55.70 Aligned_cols=11 Identities=9% Similarity=0.362 Sum_probs=6.1
Q ss_pred hHHHHHHHHhh
Q 045447 1193 SLQSVISFLRN 1203 (2058)
Q Consensus 1193 ~L~eVI~yLRR 1203 (2058)
-+..++.|++.
T Consensus 400 ~~~~~~~~l~~ 410 (597)
T 3oja_B 400 YLDRLLQYIAL 410 (597)
T ss_dssp HHHHHHHHHHH
T ss_pred chhHHHHHhhH
Confidence 35556666554
No 20
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=89.16 E-value=29 Score=37.98 Aligned_cols=96 Identities=15% Similarity=0.117 Sum_probs=57.4
Q ss_pred HhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHH
Q 045447 46 AITAEQTCSLLEQKFISLQEEFSKVESQNAQLQKSLDDRVNELAEVQSQKHQLHLQLIGKDGEIERLTMEVAELHKSRRQ 125 (2058)
Q Consensus 46 ~i~aEQ~~~~lEqk~~sl~~e~~~le~e~~eL~~~l~~~~~Ela~~q~~~~~L~~~~~~~dseverLr~ei~eLe~ekr~ 125 (2058)
....|+.+.++..++..|......|+.++..|...|++....+......+.-|.....+-..++++++..+
T Consensus 43 ~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~--------- 113 (168)
T 3o0z_A 43 ISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNL--------- 113 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 34567777777777777777778888888888887776555554443333333333222233333333333
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 126 LMELVEQKDLQHSEKGATIKAYLDKIINLTDNAAQRE 162 (2058)
Q Consensus 126 ll~llErk~~e~eel~e~l~~l~eKi~eL~~~~~~~e 162 (2058)
.....+.+.++++|..|..++++++
T Consensus 114 ------------~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 114 ------------EKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3334455666777788877777665
No 21
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=85.11 E-value=22 Score=35.89 Aligned_cols=59 Identities=8% Similarity=0.038 Sum_probs=40.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1401 LSEKEKRLSDISQAEAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDD 1459 (2058)
Q Consensus 1401 ~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~ 1459 (2058)
...++..|.+++.....+..++++....+...+.+++...+-......++.+|...|.-
T Consensus 39 ~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriql 97 (101)
T 3u1c_A 39 SKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555556677888888888888888887777777777777777776653
No 22
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=84.12 E-value=6.7 Score=41.74 Aligned_cols=87 Identities=15% Similarity=0.246 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHhh--cCCCCHH------------HHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHH
Q 045447 1325 KQRMEKENLEKRVSELLQR--CRNIDVE------------DYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQL 1390 (2058)
Q Consensus 1325 ~LqeE~~RWkqR~q~LLeK--y~riDPe------------E~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l 1390 (2058)
-|+.=+...-.|+..|-.. |.+++.. ||-+++.++..|+..+.++..++.+++..+.+.+-.+..+
T Consensus 29 ~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~ 108 (138)
T 3hnw_A 29 YLQRVASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESS 108 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666778888855 8888884 7778888888888777777777766665555555444444
Q ss_pred HHHHHhhHHHHHHHHHHhhhH
Q 045447 1391 EQELANSRLELSEKEKRLSDI 1411 (2058)
Q Consensus 1391 ~~~L~~~~~e~~~le~k~~d~ 1411 (2058)
..++.+.+.+...|+.++..+
T Consensus 109 ~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 109 AKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444333
No 23
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=81.32 E-value=91 Score=36.61 Aligned_cols=40 Identities=15% Similarity=0.187 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhcCCCC
Q 045447 1526 KLADQWKTRISSELEQHKQAVKR-LSDELEKLKHTEAGLPE 1565 (2058)
Q Consensus 1526 ~~~~~~~~~~~~~~e~~~~~~~~-l~~el~~~~~~~~~~~~ 1565 (2058)
..|.+....|+..++-|.+.+.+ |....+.++...|.+++
T Consensus 212 ~~~~qq~e~f~~~~~p~~e~~~~~l~~~~e~l~~~l~~~~~ 252 (273)
T 3s84_A 212 GHLDQQVEEFRRRVEPYGENFNKALVQQMEQLRQKLGPHAG 252 (273)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhCcchh
Confidence 56667777777777766666655 77778888887776663
No 24
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.85 E-value=67 Score=34.79 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 045447 147 YLDKIINLTDNAAQREARLAETEAELARAQATCTRLTQ 184 (2058)
Q Consensus 147 l~eKi~eL~~~~~~~e~rl~e~es~~~s~k~~e~RLeQ 184 (2058)
|..|++....-.+.++-.+......+.+.+.+.+.++.
T Consensus 4 LStKLI~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~ 41 (154)
T 2ocy_A 4 LSTQLIESVDKQSHLEEQLNKSLKTIASQKAAIENYNQ 41 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555554444455555554443
No 25
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=80.27 E-value=20 Score=38.12 Aligned_cols=89 Identities=13% Similarity=0.157 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHc--ccchHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 438 SEAVLQRVLYELEEK--AGIILDER----------AEYERMVDAYSAINQKLQNFISEKSSLEKTIQELKADLRMRERDY 505 (2058)
Q Consensus 438 Lq~~Ld~Iv~ELEeK--AP~L~eqR----------~EyErl~~~~~~Ls~~Leqa~~Erd~leke~r~a~~~l~~~eREn 505 (2058)
+-.+||.-|.+|-.+ .|.|...| .||-.+...+..|...++....|...+..++-.++-.+....+++
T Consensus 33 vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~ 112 (138)
T 3hnw_A 33 VASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEI 112 (138)
T ss_dssp HHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788888888866 88875433 577788888888888888888888888888888888888888888
Q ss_pred HHHHHHHhHHHHHHHHHHHHH
Q 045447 506 YLAQKEISDLQKQVTVLLKEC 526 (2058)
Q Consensus 506 ~~Lk~Ql~DLsrQV~vLL~Ev 526 (2058)
..|+.++..|..|+.-|=.++
T Consensus 113 ~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 113 KELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888774443
No 26
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=79.90 E-value=22 Score=35.69 Aligned_cols=54 Identities=19% Similarity=0.369 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHH
Q 045447 1351 DYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEK 1404 (2058)
Q Consensus 1351 E~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~l 1404 (2058)
+|+.|+.+|..|+.++.....++..+...+...+..-...+..+..+..++..|
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 59 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888877766666665544444444443333444444444444433
No 27
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=79.39 E-value=47 Score=33.31 Aligned_cols=57 Identities=19% Similarity=0.194 Sum_probs=38.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1403 EKEKRLSDISQAEAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDD 1459 (2058)
Q Consensus 1403 ~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~ 1459 (2058)
.++..|.+++.....+..+++.....+...+.+++...+-......+..+|...|.-
T Consensus 41 ~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriql 97 (101)
T 3u59_A 41 QLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455677778888888888877777777777777777777776643
No 28
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=79.18 E-value=7.2 Score=39.76 Aligned_cols=97 Identities=22% Similarity=0.287 Sum_probs=55.6
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHH
Q 045447 1339 ELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAAR 1418 (2058)
Q Consensus 1339 ~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l 1418 (2058)
.|+-+..+++-.++.-|+..+...++.|.. ++..+..+++++......+ ..+..|
T Consensus 13 ~~~~~~~~~~~~ei~~L~~~L~~AEeaL~~--------------Kq~~idelk~ei~q~~~~l-----------E~I~vL 67 (110)
T 2v4h_A 13 GLVPRGSHMASMQLEDLRQQLQQAEEALVA--------------KQELIDKLKEEAEQHKIVM-----------ETVPVL 67 (110)
T ss_dssp CCCCTTCCSSCCHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH-----------THHHHH
T ss_pred CCCcchhHhhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH-----------HHHHHH
Confidence 455566677777888888777766654444 4444455555444432222 124455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1419 KLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDL 1460 (2058)
Q Consensus 1419 ~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~ 1460 (2058)
+++++.-+.--..=..--+.+..+|..|..++..|+.|+..|
T Consensus 68 kaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 68 KAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 666665555444444444555666777777777777766544
No 29
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=78.62 E-value=79 Score=34.29 Aligned_cols=46 Identities=11% Similarity=0.252 Sum_probs=25.6
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1291 LREVAQKTKSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKR 1336 (2058)
Q Consensus 1291 L~e~lqk~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR 1336 (2058)
++..+..+...++-.+.++.+|..++-....-+++|..--...-+|
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqr 71 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQK 71 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHH
Confidence 4555555555555566666666666666565566555444444444
No 30
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=77.59 E-value=68 Score=33.00 Aligned_cols=83 Identities=18% Similarity=0.163 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 045447 692 RVRCLEDDLGKARSEIIALRSERDKLALEAEFAREKLDSVMREAEHQKVEVNGVLARNVEFSQLVVDYQRKLRETSESLN 771 (2058)
Q Consensus 692 ~~k~L~eql~k~r~El~~LrsE~~K~s~q~e~a~ER~e~Lq~n~e~~r~E~~sL~~rn~eLs~~~~k~e~~l~~~~e~L~ 771 (2058)
+.+.|...+.++..++..++........+ +.--..+|+..+..++.....|..+.-+|-....++++.-+.++.+|.
T Consensus 4 ~~rdL~~~~~~L~~E~e~~k~K~~~~~~e---~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLe 80 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEALKEKLEHQYAQ---SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLE 80 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHH
Confidence 35667777777777776666544333221 333456677777777877777777777776666667776666666666
Q ss_pred HHHHHH
Q 045447 772 AAQELS 777 (2058)
Q Consensus 772 aaeel~ 777 (2058)
..+..+
T Consensus 81 D~E~k~ 86 (111)
T 2v66_B 81 DFEQRL 86 (111)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555533
No 31
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=77.23 E-value=14 Score=35.95 Aligned_cols=59 Identities=19% Similarity=0.283 Sum_probs=39.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1401 LSEKEKRLSDISQAEAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDD 1459 (2058)
Q Consensus 1401 ~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~ 1459 (2058)
++.|+.||+.+...+..|+-+++.++....++..+.+.+....+.+..+++.|+.+...
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~ 66 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNG 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 35778888888777777777777777777777666666555555566666655555443
No 32
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=74.62 E-value=17 Score=38.20 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=7.5
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 045447 1348 DVEDYDRLKVEVRQMEEKLSGKNAEIE 1374 (2058)
Q Consensus 1348 DPeE~e~Lk~Eie~Le~~L~~~~ae~e 1374 (2058)
..++....+.+|..|...++.+..++.
T Consensus 29 ~~~~l~~~k~Ei~elrr~iq~L~~el~ 55 (131)
T 3tnu_A 29 NSELVQSGKSEISELRRTMQNLEIELQ 55 (131)
T ss_dssp ------------CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555565555554444444443
No 33
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=74.01 E-value=21 Score=35.54 Aligned_cols=83 Identities=19% Similarity=0.230 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 52 TCSLLEQKFISLQEEFSKVESQNAQLQKSLDDRVNELAEVQSQKHQLHLQLIGKDGEIERLTMEVAELHKSRRQLMELVE 131 (2058)
Q Consensus 52 ~~~~lEqk~~sl~~e~~~le~e~~eL~~~l~~~~~Ela~~q~~~~~L~~~~~~~dseverLr~ei~eLe~ekr~ll~llE 131 (2058)
++..|..||.++-.++..|+++|..|...+..-.. - ....+ ..-..++|..||..|..+..+|..+.
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~-~-----~~~~~---~~~ye~~i~~Lr~~i~~~~~ek~~l~---- 76 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLKG-Q-----GKSRL---GDLYEEEMRELRRQVDQLTNDKARVE---- 76 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-----HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-c-----cCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 46678899999999999999999999876642111 0 01111 12346778888888888888776665
Q ss_pred hhhhhhhhHHHHHHHHHHH
Q 045447 132 QKDLQHSEKGATIKAYLDK 150 (2058)
Q Consensus 132 rk~~e~eel~e~l~~l~eK 150 (2058)
.+++++.+++..+..|
T Consensus 77 ---~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 77 ---VERDNLAEDIMRLREK 92 (93)
T ss_dssp ---HHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHhh
Confidence 3445556665555444
No 34
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=73.55 E-value=79 Score=31.79 Aligned_cols=55 Identities=16% Similarity=0.106 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 045447 735 AEHQKVEVNGVLARNVEFSQLVVDYQRKLRETSESLNAAQELSRKLAMEVSVLKH 789 (2058)
Q Consensus 735 ~e~~r~E~~sL~~rn~eLs~~~~k~e~~l~~~~e~L~aaeel~~~L~~E~~nLKa 789 (2058)
....-.++.+|+.|++.+..-+.+.+..+......|..+.........++.+|..
T Consensus 39 ~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~R 93 (101)
T 3u1c_A 39 SKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNR 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556777777777666555555555555555555555444444445555543
No 35
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=73.55 E-value=8.8 Score=40.64 Aligned_cols=34 Identities=21% Similarity=0.163 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 045447 1429 SAQLRRKCEMLSKEKEESIKENQSLARQLDDLKQ 1462 (2058)
Q Consensus 1429 ~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k~ 1462 (2058)
-+.++.+.+.+..++.+...-+..++.|+..||.
T Consensus 98 ~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~ 131 (135)
T 2e7s_A 98 KYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKK 131 (135)
T ss_dssp HHHHHHHHHHHHHTTTHHHHCC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556667777777777778888887775
No 36
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=73.48 E-value=52 Score=33.88 Aligned_cols=72 Identities=21% Similarity=0.240 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045447 277 ELSTVNKLVELYKESSEEWSRKAGELEGVIKALETQLAQVQNDCKEKLEKEVSAREQLEKEAMDLKEKLEKCEAEIESS 355 (2058)
Q Consensus 277 EL~aq~RLaeLyke~aee~~~k~~ELe~~ikeLe~~L~q~e~~~~e~LEkE~~~~~~lEke~~eLkekl~~lE~Ele~~ 355 (2058)
+..-...|-+.|+...+++.++|.+|...+..-+..|..++..|. ..+..+..+++.|..--.++-.+|.++
T Consensus 25 ~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fs-------q~q~~vq~qL~~Lt~~Re~V~~eL~rL 96 (112)
T 1x79_B 25 TMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLS-------QAKRDVQEQMAVLMQSREQVSEELVRL 96 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455559999999999999999999888888887766554 233445555555555555544444444
No 37
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=72.65 E-value=30 Score=35.64 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHH
Q 045447 1350 EDYDRLKVEVRQMEEKLSGKNAEIE 1374 (2058)
Q Consensus 1350 eE~e~Lk~Eie~Le~~L~~~~ae~e 1374 (2058)
.+|++|..+..+|+..|....++..
T Consensus 6 ~~~~~lq~~~~ql~~qL~k~~~~r~ 30 (112)
T 1x79_B 6 DQVKKLQLMLRQANDQLEKTMKDKQ 30 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999998888877666655543
No 38
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=72.52 E-value=68 Score=33.09 Aligned_cols=80 Identities=13% Similarity=0.206 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 045447 1286 EECQKLREVAQKTKSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEK 1365 (2058)
Q Consensus 1286 ~k~qkL~e~lqk~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~ 1365 (2058)
.+|..+...++. ++-.-+.-++.-+++.-+|..-+..|++..+.-+.+.+ ..++.|+.||..|..+
T Consensus 21 ~ECrN~T~lLq~---qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q-----------~~vqeLqgEI~~Lnq~ 86 (121)
T 3mq7_A 21 MEARNVTHLLQQ---ELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQ-----------KKVEELEGEITTLNHK 86 (121)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 346555554443 45555666777788888888888888888887777662 2478899999999999
Q ss_pred HhhhhHHHHHHHhh
Q 045447 1366 LSGKNAEIEETRNL 1379 (2058)
Q Consensus 1366 L~~~~ae~e~~~~~ 1379 (2058)
|++..++++++.+.
T Consensus 87 Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 87 LQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999876653
No 39
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=72.49 E-value=39 Score=36.43 Aligned_cols=109 Identities=13% Similarity=0.142 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045447 22 AKADAYIRYLQTDFETVKARADAAAITAEQTCSLLEQKFISLQEEFSKVESQNAQLQKSLDDRVNELAEVQSQKHQLHLQ 101 (2058)
Q Consensus 22 ~K~e~~i~~l~~el~t~KA~~e~~~i~aEQ~~~~lEqk~~sl~~e~~~le~e~~eL~~~l~~~~~Ela~~q~~~~~L~~~ 101 (2058)
..++..+..|+.+.-+..+.- +.......-+.+..|+.++..++..+..|...+..+.+.++.+++++..|+.+
T Consensus 38 d~~E~~~~~l~~e~~~~~~~~------~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq 111 (152)
T 3a7p_A 38 NDKEAHLNELFQDNSGAIGGN------IVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIE 111 (152)
T ss_dssp -------------------CH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhccCCCcc------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666655444421 11111122346678888888888888888888888888888888888888766
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhhhHHHH
Q 045447 102 LIGKDGEIERLTMEVAELHKSRRQLME-LVEQKDLQHSEKGAT 143 (2058)
Q Consensus 102 ~~~~dseverLr~ei~eLe~ekr~ll~-llErk~~e~eel~e~ 143 (2058)
. .-+..++..|+.++..|+. .+.++..+-+.+|..
T Consensus 112 ~-------n~lE~kl~kLq~EN~~LV~RWM~rk~qEAe~MN~a 147 (152)
T 3a7p_A 112 N-------NVLQQKLSDLKKEHSQLVARWLKKTEKETEAMNSE 147 (152)
T ss_dssp H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 3566677778888877774 555666666655543
No 40
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=71.42 E-value=19 Score=45.20 Aligned_cols=18 Identities=22% Similarity=0.562 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 045447 1346 NIDVEDYDRLKVEVRQME 1363 (2058)
Q Consensus 1346 riDPeE~e~Lk~Eie~Le 1363 (2058)
.||-+.|+.+++.++++-
T Consensus 172 ~vd~~sY~~~QKQLeQv~ 189 (562)
T 3ghg_A 172 EVDLKDYEDQQKQLEQVI 189 (562)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred ecchHHHHHHHHHHHHHh
Confidence 799999999999999885
No 41
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=71.36 E-value=45 Score=34.85 Aligned_cols=81 Identities=15% Similarity=0.216 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 735 AEHQKVEVNGVLARNVEFSQLVVDYQRKLRETSESLNAAQELSRKLAMEVSVLKHEKEMLSNAEQRAYDEVRSLSQRVYR 814 (2058)
Q Consensus 735 ~e~~r~E~~sL~~rn~eLs~~~~k~e~~l~~~~e~L~aaeel~~~L~~E~~nLKaEK~Llk~~E~RL~~EnesL~~e~~r 814 (2058)
+..+..|+.++...+..|...+...+.+- ...+..+...+..|..++..+|.+- .|...|...|.+-+..
T Consensus 45 iq~L~~el~~l~~~~~~LE~~l~e~e~~~---~~~l~~~q~~i~~lE~eL~~~r~e~-------~~ql~EYq~LlnvKl~ 114 (129)
T 3tnu_B 45 IQRLRAEIDNVKKQCANLQNAIADAEQRG---ELALKDARNKLAELEEALQKAKQDM-------ARLLREYQELMNTKLA 114 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 34444445555555555544444333321 1122333333334444555554432 2345566677777777
Q ss_pred HHHHHHHHHHH
Q 045447 815 LQASLDTIQNA 825 (2058)
Q Consensus 815 Lqs~L~tiQs~ 825 (2058)
|...++++..+
T Consensus 115 Ld~EIatYRkL 125 (129)
T 3tnu_B 115 LDVEIATYRKL 125 (129)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 77777766554
No 42
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=70.59 E-value=67 Score=33.22 Aligned_cols=19 Identities=32% Similarity=0.697 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 045447 996 LEDELHSLRKRVSELEREN 1014 (2058)
Q Consensus 996 ~e~ei~~L~~ri~eLe~El 1014 (2058)
.+..|..|+.+|..+..+.
T Consensus 18 ye~~I~~LR~qid~~~~e~ 36 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDK 36 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555443
No 43
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=70.48 E-value=70 Score=33.07 Aligned_cols=94 Identities=15% Similarity=0.230 Sum_probs=59.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcchhHHHHh
Q 045447 1399 LELSEKEKRLSDISQAEAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLKQGKKSTGDVTGEQVMKE 1478 (2058)
Q Consensus 1399 ~e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k~~~~~~~~~~~~q~~ke 1478 (2058)
.++..|..+|.++..+.+.+.-+++..+..+..||.+|+.-..-...+..+...|.+.++++--.+
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r-------------- 85 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLAR-------------- 85 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHH--------------
Confidence 345566777777777888888888899999999999888665555566666666666665432111
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 045447 1479 KEEKDTRIQILERTVERQREELKKEKDDN 1507 (2058)
Q Consensus 1479 ~~~~~~~~~~~~~~~e~~~~~~~~e~~~~ 1507 (2058)
-+-+.+|++|...+.=++.....|...+
T Consensus 86 -~dLE~~iesL~eEl~FLKk~heeEl~eL 113 (119)
T 3ol1_A 86 -LDLERKVESLQEEIAFLKKLHEEEIQEL 113 (119)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123556666666655554444444443
No 44
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=70.30 E-value=1.3e+02 Score=32.73 Aligned_cols=38 Identities=18% Similarity=0.118 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 045447 1427 RISAQLRRKCEMLSKEKEESIKENQSLARQLDDLKQGK 1464 (2058)
Q Consensus 1427 ~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k~~~ 1464 (2058)
..-..++.+.+.+.+++.+...-+..++.|+..||.--
T Consensus 108 ~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~ 145 (154)
T 2ocy_A 108 KEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVM 145 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566667777888888889999999999999643
No 45
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=67.68 E-value=33 Score=35.85 Aligned_cols=46 Identities=26% Similarity=0.351 Sum_probs=11.8
Q ss_pred HHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 045447 1329 EKENL-EKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEE 1375 (2058)
Q Consensus 1329 E~~RW-kqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~ 1375 (2058)
|.+.| +.+++.|-... ....++....|.+|..|...++.+..++..
T Consensus 8 eaE~~y~~K~eel~~~~-~~~~~~l~~~k~Ei~elrr~iq~L~~el~~ 54 (129)
T 3tnu_B 8 EAESWYQTKYEELQQTA-GRHGDDLRNTKHEISEMNRMIQRLRAEIDN 54 (129)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344 45554443322 334455666666666666555555555543
No 46
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=66.95 E-value=61 Score=33.96 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 800 RAYDEVRSLSQRVYRLQASLDTIQNAE 826 (2058)
Q Consensus 800 RL~~EnesL~~e~~rLqs~L~tiQs~~ 826 (2058)
|...|...|.+=+..|...++++..++
T Consensus 102 ~ql~EYq~Ll~vKl~Ld~EIatYRkLL 128 (131)
T 3tnu_A 102 QQNQEYKILLDVKTRLEQEIATYRRLL 128 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 345566677777777777777766553
No 47
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=66.00 E-value=52 Score=32.36 Aligned_cols=70 Identities=17% Similarity=0.159 Sum_probs=47.6
Q ss_pred hhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1381 STKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQL 1457 (2058)
Q Consensus 1381 ~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~ 1457 (2058)
......+..++..+......+.+++.+...+.++.+.|..+ ++..-..+..+.+.+.+|...+..|...+
T Consensus 17 ~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q-------l~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 17 KEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS-------MKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445556667777777777777877877777777777665 66666777777776666666666665554
No 48
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=63.85 E-value=50 Score=35.61 Aligned_cols=65 Identities=20% Similarity=0.257 Sum_probs=45.4
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 045447 1276 QLREENKYNFEECQKLREVAQKTKSDCDNLENLLRERQIEIEACKKEMEKQRMEK----ENLEKRVSEL 1340 (2058)
Q Consensus 1276 tLReE~~~~~~k~qkL~e~lqk~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~----~RWkqR~q~L 1340 (2058)
.|+.|+.++..+|..+.+++.--...++.|...+..|+.++..++..+..|+.|. +||=+|...=
T Consensus 72 ~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~qE 140 (152)
T 3a7p_A 72 ILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKE 140 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555556666666555445567778888888888888888888888887 7887776543
No 49
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=63.69 E-value=55 Score=41.32 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=0.0
Q ss_pred hhhhhhhccccccchHHHHHHhHHHH
Q 045447 558 AEKIISEHLLTFKDINGLVEQNVQLR 583 (2058)
Q Consensus 558 T~~vISerLVtFkdI~ELQeQNqeLL 583 (2058)
...+-|.+|||-+.=.||.-=|.+.-
T Consensus 406 ~~e~ht~klvtskg~kel~ig~ekvt 431 (562)
T 3ghg_A 406 RREYHTEKLVTSKGDKELRTGKEKVT 431 (562)
T ss_dssp --------------------------
T ss_pred cccccccceeecCCCceeeccccccc
Confidence 35677888888888888777766654
No 50
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=60.74 E-value=1.7e+02 Score=30.69 Aligned_cols=86 Identities=23% Similarity=0.255 Sum_probs=45.1
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcchhHHHHhhhhh
Q 045447 1403 EKEKRLSDISQAEAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLKQGKKSTGDVTGEQVMKEKEEK 1482 (2058)
Q Consensus 1403 ~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k~~~~~~~~~~~~q~~ke~~~~ 1482 (2058)
+-.+|+.-++......++++-+++..+..+++.++...+.+.--.. ++-++-++--| .- -.|--.| ||
T Consensus 43 EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~--qQnQQSlDiRK-Lr------ELEADLK---EK 110 (167)
T 4gkw_A 43 EEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQ--QQNQQSLDMRK-LG------ELEADLK---EK 110 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-TH------HHHHTHH---HH
T ss_pred HHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhH--HHhHhhhhHHH-HH------HHHhHHh---hh
Confidence 3345555555555666777777777777777666655554322111 11111111111 00 1111245 49
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 045447 1483 DTRIQILERTVERQREEL 1500 (2058)
Q Consensus 1483 ~~~~~~~~~~~e~~~~~~ 1500 (2058)
|++.-.|-.++--+|.+|
T Consensus 111 DsMVe~LT~TiG~LrKEL 128 (167)
T 4gkw_A 111 DSMVESLTETIGILRKEL 128 (167)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 999998888877755333
No 51
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=59.35 E-value=57 Score=31.70 Aligned_cols=49 Identities=33% Similarity=0.415 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 995 SLEDELHSLRKRVSELERENILKSEEIASAAGVREDALASAREEITSLKEERSIKISQIV 1054 (2058)
Q Consensus 995 e~e~ei~~L~~ri~eLe~El~~~~eE~~~~~~~~e~ql~~l~~El~~Lk~E~~~~~~~~~ 1054 (2058)
.+=.+|+.|+-||+++++|... ++..|.+...||..|+..+..+-..+.
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQ-----------yEkKLKsTK~El~~Lq~qLe~kd~ei~ 71 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQ-----------YEWKLKATKAEVAQLQEQVALKDAEIE 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhhhHHHHHHHHHHHHhhHHHHH
Confidence 4556789999999999998744 455677777888888877665554433
No 52
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=59.26 E-value=1.5e+02 Score=29.66 Aligned_cols=15 Identities=20% Similarity=0.457 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHH
Q 045447 1350 EDYDRLKVEVRQMEE 1364 (2058)
Q Consensus 1350 eE~e~Lk~Eie~Le~ 1364 (2058)
++.+.|..++..|+.
T Consensus 4 ~~~~~l~~eL~~l~~ 18 (96)
T 3q8t_A 4 SDSEQLQRELKELAL 18 (96)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 344555555555543
No 53
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=59.12 E-value=2e+02 Score=35.67 Aligned_cols=113 Identities=15% Similarity=0.185 Sum_probs=70.3
Q ss_pred HHHHHHHHHhhcCCCCHHH-HHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhH
Q 045447 1333 LEKRVSELLQRCRNIDVED-YDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDI 1411 (2058)
Q Consensus 1333 WkqR~q~LLeKy~riDPeE-~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~ 1411 (2058)
|..-++.++. +.+||++ ++.+...+..+ |.+..++. +..+..+-|+.+|++.++.+..++++-+..
T Consensus 357 ~~~~~~~vl~--G~~t~eeal~~~~~~i~~~---l~~~~~~~--------e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (471)
T 3mq9_A 357 VRTAVINAAS--GRQTVDEALKDAQTRITAA---RDGLRAVM--------EARNVTHLLQQELTEAQKGFQDVEAQAATA 423 (471)
T ss_dssp HHHHHHHHHH--SSSCHHHHHHHHHHHHHHH---HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCCHHHHHHHHHHHHHHH---HHhhHHHH--------HhhhHHHHHHHHHHHHhhhHHHHHHHhhhc
Confidence 3444555554 6788875 55555555433 22222222 334555667888888888888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045447 1412 SQAEAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLK 1461 (2058)
Q Consensus 1412 ~~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k 1461 (2058)
+.-.-+|+.-+++-... -.++.+.+..|..+++.+++.+..||+.++
T Consensus 424 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 424 NHTVMALMASLDAEKAQ---GQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66666666666543322 223566667777888888888887777665
No 54
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=56.83 E-value=1.6e+02 Score=29.39 Aligned_cols=51 Identities=22% Similarity=0.280 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 045447 738 QKVEVNGVLARNVEFSQLVVDYQRKLRETSESLNAAQELSRKLAMEVSVLK 788 (2058)
Q Consensus 738 ~r~E~~sL~~rn~eLs~~~~k~e~~l~~~~e~L~aaeel~~~L~~E~~nLK 788 (2058)
.-.++.+|+++++.+..-+.+++.++......|..++........++++|.
T Consensus 42 ~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLn 92 (101)
T 3u59_A 42 LEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLN 92 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666555555445555555554445444444444444444443
No 55
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=56.24 E-value=60 Score=31.86 Aligned_cols=82 Identities=17% Similarity=0.311 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHH
Q 045447 1309 LRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTIS 1388 (2058)
Q Consensus 1309 i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~ 1388 (2058)
|++|..++..+..+...|.-++++|+-=+.++=.||. .|+. .-.+..+.|.
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE-----------~E~~------------------~R~~~E~d~~ 52 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQ-----------EEML------------------QREEAENTLQ 52 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH------------------HHHHHHHHHH
Confidence 3455556666666667777777777766666666671 1111 1122334456
Q ss_pred HHHHHHHhhHHHHHHHHHHhhhHHHHHHHHH
Q 045447 1389 QLEQELANSRLELSEKEKRLSDISQAEAARK 1419 (2058)
Q Consensus 1389 ~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~ 1419 (2058)
.|+..+..+.-.+..|+.++..+..+++-|+
T Consensus 53 ~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 53 SFRQDVDNASLARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777777777777788888877755555443
No 56
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=55.48 E-value=14 Score=30.46 Aligned_cols=27 Identities=19% Similarity=0.449 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1138 EKLKNEAEEKYDEVNEQNKILHSRLEA 1164 (2058)
Q Consensus 1138 e~Ei~el~~R~eDL~~QN~LLH~QLE~ 1164 (2058)
.......++-|+||..||.+|-.||-.
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 345566788999999999999999854
No 57
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=55.19 E-value=56 Score=32.62 Aligned_cols=74 Identities=22% Similarity=0.248 Sum_probs=36.9
Q ss_pred hhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1378 NLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQL 1457 (2058)
Q Consensus 1378 ~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~ 1457 (2058)
..|..++..|.+|.+.+...+..+ .....|+.+++.-+.--..=+.--+.+..++.+|..++..|++++
T Consensus 16 eaL~~kq~~id~lke~~~q~~~~~-----------E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~ 84 (94)
T 3jsv_C 16 EALVAKQELIDKLKEEAEQHKIVM-----------ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREF 84 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTT
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344455555555555444333222 123445555554444433333444555667777777777777777
Q ss_pred HHHhc
Q 045447 1458 DDLKQ 1462 (2058)
Q Consensus 1458 ~~~k~ 1462 (2058)
..|++
T Consensus 85 ~~L~~ 89 (94)
T 3jsv_C 85 NKLKV 89 (94)
T ss_dssp C----
T ss_pred HHHHH
Confidence 66664
No 58
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=55.17 E-value=2.2e+02 Score=30.43 Aligned_cols=13 Identities=31% Similarity=0.644 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 045447 1354 RLKVEVRQMEEKL 1366 (2058)
Q Consensus 1354 ~Lk~Eie~Le~~L 1366 (2058)
+|..+...|+.++
T Consensus 26 ~l~~eN~~Lk~e~ 38 (155)
T 2oto_A 26 RLRHENKDLKARL 38 (155)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344433343333
No 59
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=54.71 E-value=1.4e+02 Score=30.16 Aligned_cols=51 Identities=20% Similarity=0.310 Sum_probs=20.5
Q ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 045447 94 QKHQLHLQLIGKDGEIERLTMEVAELHKSRRQLMELVEQKDLQHSEKGATI 144 (2058)
Q Consensus 94 ~~~~L~~~~~~~dseverLr~ei~eLe~ekr~ll~llErk~~e~eel~e~l 144 (2058)
++.+|.......+.++.+|..++..-..-+...-.....-+.++++|...|
T Consensus 13 ~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 13 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444333333333333333333344455544443
No 60
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=54.05 E-value=10 Score=38.31 Aligned_cols=75 Identities=17% Similarity=0.187 Sum_probs=41.2
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHH--hhhhhhhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1266 ELNLLRESNVQLREENKYNFEECQKLREVAQK--TKSDCDNLENLL-----RERQIEIEACKKEMEKQRMEKENLEKRVS 1338 (2058)
Q Consensus 1266 qLNlLRESN~tLReE~~~~~~k~qkL~e~lqk--~~~elepLe~~i-----~el~~elE~~~~Ei~~LqeE~~RWkqR~q 1338 (2058)
+++-||.=--+|+-|+.++.+++..|+-.+.+ ++....|...+| ............++..|++|+.|++.|+.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445666666666666666666655 222333322222 11222223346788888999999998875
Q ss_pred HH
Q 045447 1339 EL 1340 (2058)
Q Consensus 1339 ~L 1340 (2058)
.|
T Consensus 93 ~l 94 (100)
T 1go4_E 93 AM 94 (100)
T ss_dssp TC
T ss_pred HH
Confidence 43
No 61
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=53.82 E-value=27 Score=33.74 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 045447 1319 CKKEMEKQRMEKENLEKRVSELLQRC 1344 (2058)
Q Consensus 1319 ~~~Ei~~LqeE~~RWkqR~q~LLeKy 1344 (2058)
+...|.+|+.|.+.|..|+..+-.+.
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l 29 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADK 29 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777778877776665544
No 62
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=53.79 E-value=1.6e+02 Score=29.00 Aligned_cols=50 Identities=22% Similarity=0.157 Sum_probs=38.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1120 KAENSELKSKWELEKSVLEKLKNEAEEKYDEVNEQNKILHSRLEALHIQL 1169 (2058)
Q Consensus 1120 k~~L~e~e~SWeeqk~~Le~Ei~el~~R~eDL~~QN~LLH~QLE~lt~Qi 1169 (2058)
+..|.....+....+..|..++.++..||..|.++..-|..+|..+...+
T Consensus 37 rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 37 KKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555556666666666699999999999999999999999988665
No 63
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=53.00 E-value=1.8e+02 Score=36.04 Aligned_cols=66 Identities=17% Similarity=0.221 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045447 1100 QALASLQEQASELRKLADALKAENSELKSKWELEKSVLEKLKNEAEEKYDEVNEQNKILHSRLEALHIQLTEK 1172 (2058)
Q Consensus 1100 e~~~~lq~e~~elr~~aesak~~L~e~e~SWeeqk~~Le~Ei~el~~R~eDL~~QN~LLH~QLE~lt~Qia~~ 1172 (2058)
+++..+|.-+.+++++|.++..+.-... ..|+++++...+|+++|..|=+-|..+|+.+.+++-++
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 404 QELTEAQKGFQDVEAQAATANHTVMALM-------ASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHhhhcchhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456666677777777776655554444 34667777777899999999999999999999887543
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=52.89 E-value=1.5e+02 Score=36.97 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1137 LEKLKNEAEEKYDEVNEQNKILHSRL 1162 (2058)
Q Consensus 1137 Le~Ei~el~~R~eDL~~QN~LLH~QL 1162 (2058)
+...+.++..++.|+..|-..|..||
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (487)
T 3oja_A 461 ADLALASANATLQELVVREQNLASQL 486 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhcccHHHHHHHHHHHHHHhc
Confidence 44455566677788888877777775
No 65
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=49.86 E-value=1.2e+02 Score=28.74 Aligned_cols=65 Identities=18% Similarity=0.281 Sum_probs=41.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 045447 455 IILDERAEYERMVDAYSAINQKLQNFISEKSSLEKTIQELKADLRMRERDYYLAQKEISDLQKQVTVLLKECRD 528 (2058)
Q Consensus 455 ~L~eqR~EyErl~~~~~~Ls~~Leqa~~Erd~leke~r~a~~~l~~~eREn~~Lk~Ql~DLsrQV~vLL~Ev~~ 528 (2058)
+|.+.|..|+.+...+- ..++.. +...+..++..+..+.-+....+.++.+|-++|+.|=.|+..
T Consensus 10 il~eiRaQYE~ia~knr---~EaE~~------y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 10 AMRDVRQQYESVAAKNL---QEAEEW------YKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhH---HHHHHH------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666788877655322 112222 223344555666666677777888889999999999888764
No 66
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=49.08 E-value=1.6e+02 Score=29.36 Aligned_cols=16 Identities=19% Similarity=0.200 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 045447 1439 LSKEKEESIKENQSLA 1454 (2058)
Q Consensus 1439 ~~~e~~e~~~e~~~l~ 1454 (2058)
+.-++.++..+..++.
T Consensus 65 ~~~ql~e~~dE~~Sl~ 80 (96)
T 3q8t_A 65 FKRQQLELDDELKSVE 80 (96)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 67
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=48.39 E-value=33 Score=32.71 Aligned_cols=45 Identities=13% Similarity=0.220 Sum_probs=33.7
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1290 KLREVAQKTKSDCDNLENLLRERQIEIEACKKEMEKQRMEKENLE 1334 (2058)
Q Consensus 1290 kL~e~lqk~~~elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWk 1334 (2058)
+|+..+++...++...+..|++++..|..++.+|..|+.+.|.++
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445554456677778899999999999999998888877664
No 68
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=47.80 E-value=2.1e+02 Score=28.40 Aligned_cols=37 Identities=16% Similarity=0.185 Sum_probs=30.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 135 LQHSEKGATIKAYLDKIINLTDNAAQREARLAETEAE 171 (2058)
Q Consensus 135 ~e~eel~e~l~~l~eKi~eL~~~~~~~e~rl~e~es~ 171 (2058)
..+..||+-+.+|-+|+..|......++.++..+...
T Consensus 9 e~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~ 45 (93)
T 3s4r_A 9 VELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQ 45 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4567899999999999999988888888877766543
No 69
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=47.04 E-value=1.6e+02 Score=28.86 Aligned_cols=28 Identities=25% Similarity=0.163 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 045447 500 MRERDYYLAQKEISDLQKQVTVLLKECR 527 (2058)
Q Consensus 500 ~~eREn~~Lk~Ql~DLsrQV~vLL~Ev~ 527 (2058)
.+.+...-+---..||..||..|..|+.
T Consensus 53 ~LrkdvD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 53 SFRQDVDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555566899999999998875
No 70
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=46.65 E-value=64 Score=32.35 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 045447 1306 ENLLRERQIEIEACKKEMEKQRMEKENLEKRVSELLQRCR 1345 (2058)
Q Consensus 1306 e~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~LLeKy~ 1345 (2058)
-.+|++|..+++-+..|+..|..+...|.+--+.=|.||+
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~~~~~~~~~~~~~ 103 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELHRQQERAPLSKFG 103 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhcC
Confidence 4668888889999999999999999999886555566664
No 71
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=46.65 E-value=2.1e+02 Score=27.75 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1035 AREEITSLKEERSIKISQIVNLEVQV 1060 (2058)
Q Consensus 1035 l~~El~~Lk~E~~~~~~~~~~~E~q~ 1060 (2058)
+..++.....+.+..+..+..++.+|
T Consensus 45 ~r~e~~~q~~EYq~LlnvK~~Ld~EI 70 (84)
T 1gk4_A 45 MKEEMARHLREYQDLLNVKMALDIEI 70 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33333333333333333333333333
No 72
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=46.62 E-value=2.3e+02 Score=29.13 Aligned_cols=77 Identities=16% Similarity=0.294 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 045447 1387 ISQLEQELANSRLELSEKEKRLSDISQAEAARKL---EMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLKQG 1463 (2058)
Q Consensus 1387 ~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~---e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k~~ 1463 (2058)
|..|...|..+-.-+......+..+..+.+.+.. .+..++..+.-++..+..=..-.+.+..+++.|+.|+..|...
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHH
Confidence 4444555555444444444445555444444555 3445555555555555555556667788888888888877643
No 73
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=45.82 E-value=2.3e+02 Score=30.47 Aligned_cols=51 Identities=12% Similarity=0.227 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHH
Q 045447 1034 SAREEITSLKEERSIKISQIVNLEVQVSALKEDLEK---EHERRQAAQANYERQ 1084 (2058)
Q Consensus 1034 ~l~~El~~Lk~E~~~~~~~~~~~E~q~~~l~~DL~~---Q~~~a~eAQ~nYErE 1084 (2058)
.+..+|.....-.......+..++.++..+-+.|+. ....+..-..+|+..
T Consensus 84 ~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~ 137 (147)
T 2b9c_A 84 IIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENE 137 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHH
Confidence 333444333333333333333344444433333333 222345556677754
No 74
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=45.14 E-value=1.8e+02 Score=27.91 Aligned_cols=40 Identities=13% Similarity=0.196 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 733 REAEHQKVEVNGVLARNVEFSQLVVDYQRKLRETSESLNA 772 (2058)
Q Consensus 733 ~n~e~~r~E~~sL~~rn~eLs~~~~k~e~~l~~~~e~L~a 772 (2058)
..+...-.++.+|++|++.+..-+.+.+-++......|..
T Consensus 34 ~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 34 ERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445556666666666555555554444444444433
No 75
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=43.96 E-value=1.6e+02 Score=30.59 Aligned_cols=51 Identities=14% Similarity=0.229 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 25 DAYIRYLQTDFETVKARADAAAITAEQTCSLLEQKFISLQEEFSKVESQNA 75 (2058)
Q Consensus 25 e~~i~~l~~el~t~KA~~e~~~i~aEQ~~~~lEqk~~sl~~e~~~le~e~~ 75 (2058)
+.-|..|+-+++.+|+..+...+.+-.-+..+..++..|..+|........
T Consensus 14 D~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q 64 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQ 64 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999877777777777777777777765554433
No 76
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=43.82 E-value=4.3e+02 Score=33.05 Aligned_cols=48 Identities=25% Similarity=0.263 Sum_probs=23.3
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHH
Q 045447 1372 EIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARK 1419 (2058)
Q Consensus 1372 e~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~ 1419 (2058)
.+..+++.++.....|+..++.|....++...++..+..+.+.++.-+
T Consensus 371 aInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~KiAE~K 418 (602)
T 1cii_A 371 AVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIAEEK 418 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 333334444444445555555555555555555555555444433333
No 77
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=43.71 E-value=83 Score=31.85 Aligned_cols=55 Identities=22% Similarity=0.296 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---Hhh---cCCCCH------------H--HHHHHHHHHHHHHHHHhhh
Q 045447 1315 EIEACKKEMEKQRMEKENLEKRVSEL---LQR---CRNIDV------------E--DYDRLKVEVRQMEEKLSGK 1369 (2058)
Q Consensus 1315 elE~~~~Ei~~LqeE~~RWkqR~q~L---LeK---y~riDP------------e--E~e~Lk~Eie~Le~~L~~~ 1369 (2058)
++..+..+|..|..|+++|++|...| |++ .+..|| . -|+..+.+++.|+.++..+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erL 87 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERL 87 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555667777777777777776553 333 233444 3 4556777777776644444
No 78
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=43.30 E-value=92 Score=31.26 Aligned_cols=59 Identities=15% Similarity=0.079 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHcccchHHHHHHHHHHHH
Q 045447 410 DGWSLAKIYAKYQEAVDALRHEQLGRKESEAVLQRVLYELEEKAGIILDERAEYERMVD 468 (2058)
Q Consensus 410 sG~SLTqlYt~Yve~k~qL~~Er~en~rLq~~Ld~Iv~ELEeKAP~L~eqR~EyErl~~ 468 (2058)
.|||=.+|..+|..+.+-+-.-..++.+|+..-...-.-|.+-+-.|.++|.|+.++..
T Consensus 28 ~~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 28 QNMSKQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999888886666677777764333322222222234455555544444
No 79
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=41.24 E-value=2e+02 Score=28.88 Aligned_cols=23 Identities=22% Similarity=0.111 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1415 EAARKLEMEKQKRISAQLRRKCE 1437 (2058)
Q Consensus 1415 ~~~l~~e~e~~~~~~~~~k~~~e 1437 (2058)
...|...++.+...++.+..++.
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~ 94 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEK 94 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443333
No 80
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=40.52 E-value=2.9e+02 Score=27.60 Aligned_cols=40 Identities=20% Similarity=0.165 Sum_probs=22.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 940 LQVGKEELEKLKEEAQANREHMLQYKSIAQVNEAALKEME 979 (2058)
Q Consensus 940 L~~lk~ELe~lkeeL~~Ak~qveQYK~IAqsaEeaL~~l~ 979 (2058)
++.+-..+..++.++.....++.++..--.-++..+.+|.
T Consensus 8 ~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~ 47 (117)
T 2zqm_A 8 VQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIE 47 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555666666666666666555555555555554
No 81
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=40.42 E-value=75 Score=30.88 Aligned_cols=47 Identities=17% Similarity=0.201 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 53 CSLLEQKFISLQEEFSKVESQNAQLQKSLDDRVNELAEVQSQKHQLH 99 (2058)
Q Consensus 53 ~~~lEqk~~sl~~e~~~le~e~~eL~~~l~~~~~Ela~~q~~~~~L~ 99 (2058)
|..+.+|+.++....+.|+..+..|...|+....+...++.++.++.
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~ 54 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAA 54 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555665555555554444444444444443
No 82
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=39.30 E-value=3.5e+02 Score=28.06 Aligned_cols=43 Identities=28% Similarity=0.263 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045447 1419 KLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLK 1461 (2058)
Q Consensus 1419 ~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k 1461 (2058)
++.++.+++.++.|+.++.....+.+.|.++++.+.-.|..-+
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~~ 112 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADKK 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhcc
Confidence 4457777888888888888888888888888888887776655
No 83
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=38.89 E-value=78 Score=30.77 Aligned_cols=64 Identities=19% Similarity=0.275 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 045447 466 MVDAYSAINQKLQNFISEKSSLEKTIQELKADLRMRERDYYLAQKEISDLQKQVTVLLKECRDI 529 (2058)
Q Consensus 466 l~~~~~~Ls~~Leqa~~Erd~leke~r~a~~~l~~~eREn~~Lk~Ql~DLsrQV~vLL~Ev~~~ 529 (2058)
|...+..++.+|+.+..+...++..++.++..+.+..-+-..++.++.-+--+.-+=|+|++++
T Consensus 4 l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~el 67 (79)
T 3cvf_A 4 MAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSEL 67 (79)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4455677788888888888888888888888888888888888888888888888778888764
No 84
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=38.29 E-value=4e+02 Score=28.46 Aligned_cols=10 Identities=60% Similarity=0.843 Sum_probs=4.7
Q ss_pred hHHHHHHhhh
Q 045447 1274 NVQLREENKY 1283 (2058)
Q Consensus 1274 N~tLReE~~~ 1283 (2058)
|.-|+.+|..
T Consensus 24 n~~l~~eN~~ 33 (155)
T 2oto_A 24 NIRLRHENKD 33 (155)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 3445555443
No 85
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=37.87 E-value=1.9e+02 Score=27.95 Aligned_cols=70 Identities=27% Similarity=0.189 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 045447 111 RLTMEVAELHKSRRQLMELVEQKDLQHSEKGATIKAYLDKIINLTDNAAQREARLAETEAELARAQATCTRLTQGKELIE 190 (2058)
Q Consensus 111 rLr~ei~eLe~ekr~ll~llErk~~e~eel~e~l~~l~eKi~eL~~~~~~~e~rl~e~es~~~s~k~~e~RLeQE~eLLq 190 (2058)
-+..++.-|-.+|.+|+..- ..|+-.+-.+.+|++++..+-...+.....+.|=+.-++
T Consensus 6 gmgkevEnLi~EN~eLl~TK---------------------NaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~ 64 (77)
T 2w83_C 6 FMGREVENLILENTQLLETK---------------------NALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLE 64 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666655555432 234555555666777766665555555556666665556
Q ss_pred HHHHhHHHHHh
Q 045447 191 RHNAWLNEELT 201 (2058)
Q Consensus 191 knneWLe~ELk 201 (2058)
..+.-|++||+
T Consensus 65 ~ri~elEeElk 75 (77)
T 2w83_C 65 EKNRELEEELR 75 (77)
T ss_dssp HHC--------
T ss_pred HHHHHHHHHHh
Confidence 56666666655
No 86
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=37.77 E-value=1.3e+02 Score=27.10 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 687 EKMAERVRCLEDDLGKARSEIIALRSERDKLALEAEFAREKLDS 730 (2058)
Q Consensus 687 ~q~~e~~k~L~eql~k~r~El~~LrsE~~K~s~q~e~a~ER~e~ 730 (2058)
.++...+-.|..+++.+..++..|++....+..++.-|++|+..
T Consensus 7 ~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlDN 50 (52)
T 1jcd_A 7 DQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRADN 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 45667788899999999999999999888888888889999874
No 87
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=37.10 E-value=1.1e+02 Score=31.15 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=19.7
Q ss_pred cCCCCH---HHHHHHHHHHHHHHHHHhhhhHHH
Q 045447 1344 CRNIDV---EDYDRLKVEVRQMEEKLSGKNAEI 1373 (2058)
Q Consensus 1344 y~riDP---eE~e~Lk~Eie~Le~~L~~~~ae~ 1373 (2058)
|..||| ++++.|..+|...+..|-.....+
T Consensus 26 ~~~~~~~tM~~ieeLQ~Ei~~~E~QL~iArQKL 58 (107)
T 2k48_A 26 FQGIDPFTMSTLQELQENITAHEQQLVTARQKL 58 (107)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345665 788888888888777554444333
No 88
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=35.85 E-value=1.9e+02 Score=35.28 Aligned_cols=107 Identities=10% Similarity=0.135 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 415 AKIYAKYQEAVDALRHEQLGRKESEAVLQRVLYELEEKAGIILDERAEYERMVDAYSAINQKLQNFISEKSSLEKTIQEL 494 (2058)
Q Consensus 415 TqlYt~Yve~k~qL~~Er~en~rLq~~Ld~Iv~ELEeKAP~L~eqR~EyErl~~~~~~Ls~~Leqa~~Erd~leke~r~a 494 (2058)
.++|.-+..+.+-|+.-..........+.++..+||.+.=+|++-=. .-.-.+..|..-|++.+.++.+|+.+++-+
T Consensus 84 ~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~---~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c 160 (390)
T 1deq_A 84 KDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVI---EQVQRINLLQKNVRDQLVDMKRLEVDIDIK 160 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777766667777788899999999999888876422 222366777778888888899999888777
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 045447 495 KADLRMRERDYYLAQKEISDLQKQVTVLLK 524 (2058)
Q Consensus 495 ~~~l~~~eREn~~Lk~Ql~DLsrQV~vLL~ 524 (2058)
..-++....-.--++--+.|...|-..|+.
T Consensus 161 ~~~C~~sC~~~l~~~vD~e~ye~qqKQL~q 190 (390)
T 1deq_A 161 IRSCKGSCSRALEHKVDLEDYKNQQKQLEQ 190 (390)
T ss_pred hcccccccchhhhhhccHHHHHHHHHHHHh
Confidence 766655544444444444555555444544
No 89
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=35.81 E-value=1.7e+02 Score=28.58 Aligned_cols=29 Identities=14% Similarity=0.227 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1033 ASAREEITSLKEERSIKISQIVNLEVQVS 1061 (2058)
Q Consensus 1033 ~~l~~El~~Lk~E~~~~~~~~~~~E~q~~ 1061 (2058)
..+..++.....+.+..+..+..++.+|.
T Consensus 45 ~~~r~e~~~ql~EYq~LlnvK~~Le~EIa 73 (86)
T 1x8y_A 45 AEMRARMQQQLDEYQELLDIKLALDMEIH 73 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33333333333343434444334444443
No 90
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=35.13 E-value=2.1e+02 Score=27.40 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 59 KFISLQEEFSKVESQNAQLQKSLDDRV 85 (2058)
Q Consensus 59 k~~sl~~e~~~le~e~~eL~~~l~~~~ 85 (2058)
|+.++..+...++..+..|+..|+...
T Consensus 8 kLq~~E~~N~~Le~~v~~le~~Le~s~ 34 (72)
T 3cve_A 8 KLQEVEIRNKDLEGQLSEMEQRLEKSQ 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444333
No 91
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=35.05 E-value=3e+02 Score=34.76 Aligned_cols=9 Identities=11% Similarity=0.102 Sum_probs=4.6
Q ss_pred HHHHhhcCC
Q 045447 1338 SELLQRCRN 1346 (2058)
Q Consensus 1338 q~LLeKy~r 1346 (2058)
++.|.||++
T Consensus 88 ~D~L~k~q~ 96 (464)
T 1m1j_B 88 QTTLLKQEK 96 (464)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhh
Confidence 444556643
No 92
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=34.76 E-value=4.9e+02 Score=28.52 Aligned_cols=34 Identities=24% Similarity=0.426 Sum_probs=19.1
Q ss_pred HHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHh
Q 045447 1360 RQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELAN 1396 (2058)
Q Consensus 1360 e~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~ 1396 (2058)
+.=+++|.++.++...++ ....+.+..|++.|..
T Consensus 33 e~ek~~l~~~e~~r~k~~---~h~~~k~~qlre~~d~ 66 (169)
T 3k29_A 33 ELEQEKLRERESERDKVK---NHYMQKIRQLREQLDD 66 (169)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhc
Confidence 333445556666664333 4555557777777766
No 93
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=34.48 E-value=4.3e+02 Score=32.43 Aligned_cols=24 Identities=13% Similarity=0.423 Sum_probs=14.5
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Q 045447 1336 RVSELLQRCRNIDVEDYDRLKVEVRQMEEKL 1366 (2058)
Q Consensus 1336 R~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L 1366 (2058)
|.+.+|.+++ +.++..|+.|+..|
T Consensus 53 rLqg~Ldk~e-------r~~~~rIe~L~~~L 76 (390)
T 1deq_A 53 RMKGLIDEVD-------QDFTSRINKLRDSL 76 (390)
T ss_pred hHHHHHHHhh-------hhHHHHHHHHHHHH
Confidence 5677777775 45555666665433
No 94
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=33.83 E-value=5e+02 Score=31.81 Aligned_cols=109 Identities=14% Similarity=0.318 Sum_probs=70.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHcccchHH-------------HHHHHHHHHHHHHHHHHHHH
Q 045447 412 WSLAKIYAKYQEAVDALRHEQLGRKESEAVLQRVLYELEEKAGIILD-------------ERAEYERMVDAYSAINQKLQ 478 (2058)
Q Consensus 412 ~SLTqlYt~Yve~k~qL~~Er~en~rLq~~Ld~Iv~ELEeKAP~L~e-------------qR~EyErl~~~~~~Ls~~Le 478 (2058)
...-.+|.+|..+..++..-| ..-....+.+.-.++..-...+ +..|..++...+..|...|+
T Consensus 140 ~~~~~~~~~~~~~~~e~~~k~----~a~~af~~~~~~f~~q~~~~e~~~~~~~~~~~~~~~~~e~~~~~~n~~~l~~~~~ 215 (373)
T 3hhm_B 140 REYDRLYEEYTRTSQEIQMKR----TAIEAFNETIKIFEEQCQTQERYSKEYIEKFKREGNEKEIQRIMHNYDKLKSRIS 215 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhccchHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcChHHHHHHHHhHHHHHHHHH
Confidence 345667888888777775422 2222222222222222111111 12355788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 045447 479 NFISEKSSLEKTIQELKADLRMRERDYYLAQKEISDLQKQVTVLLK 524 (2058)
Q Consensus 479 qa~~Erd~leke~r~a~~~l~~~eREn~~Lk~Ql~DLsrQV~vLL~ 524 (2058)
.+..-+..++.+++.-..+...++|+.+.|+=.+-.|.++---.+.
T Consensus 216 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~~~~ 261 (373)
T 3hhm_B 216 EIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQYLM 261 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHH
Confidence 9999999999999988888899999999999888666665444443
No 95
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=32.95 E-value=3.1e+02 Score=27.35 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045447 1439 LSKEKEESIKENQSLARQLD 1458 (2058)
Q Consensus 1439 ~~~e~~e~~~e~~~l~~q~~ 1458 (2058)
+..+...+..++..|..++.
T Consensus 83 l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 83 LIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 96
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=32.75 E-value=1.1e+02 Score=27.56 Aligned_cols=40 Identities=8% Similarity=0.177 Sum_probs=26.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1301 DCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSEL 1340 (2058)
Q Consensus 1301 elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~L 1340 (2058)
++..|-.+|..|..++..+..++..-++|..|--+|...|
T Consensus 12 ~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlDN~ 51 (52)
T 1jcd_A 12 DAQTANAKADQASNDANAARSDAQAAKDDAARANQRADNA 51 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3444555555555555566667778888888999887643
No 97
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=32.51 E-value=2.4e+02 Score=27.86 Aligned_cols=12 Identities=8% Similarity=0.288 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 045447 1353 DRLKVEVRQMEE 1364 (2058)
Q Consensus 1353 e~Lk~Eie~Le~ 1364 (2058)
.+++.++..+..
T Consensus 11 ~~lq~~~~~l~~ 22 (107)
T 1fxk_A 11 QQLQQQAQAISV 22 (107)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 98
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.21 E-value=3.2e+02 Score=28.46 Aligned_cols=108 Identities=17% Similarity=0.215 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHH----HHH
Q 045447 1347 IDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARK----LEM 1422 (2058)
Q Consensus 1347 iDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~----~e~ 1422 (2058)
.||.||..|...|...=-.+......+.++-+.|++..+ ...||++|-.+......+-+.++.....++.+. .-.
T Consensus 7 ~d~~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kD-t~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~~~~ 85 (130)
T 2dnx_A 7 GQLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQD-SSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSE 85 (130)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccch
Confidence 478888888888765555555555555555556666544 345777777777666666666666555544431 001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045447 1423 EKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLK 1461 (2058)
Q Consensus 1423 e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k 1461 (2058)
+ .+.|-..+.|..++....++-+.+++.+.+-.
T Consensus 86 ~------r~~k~q~~KL~~dF~~~L~~FQ~~Qr~~aeke 118 (130)
T 2dnx_A 86 Q------RQQRLQKERLMNDFSAALNNFQAVQRRVSEKE 118 (130)
T ss_dssp H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12333455666777777777777777765543
No 99
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=32.04 E-value=5.2e+02 Score=28.00 Aligned_cols=80 Identities=18% Similarity=0.255 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 045447 722 EFAREKLDSVMREAEHQKVEVNGVLARNVEFSQLVVDYQRKLRETSESLNAAQELSRKLAMEVSVLKHEKEMLSNAEQRA 801 (2058)
Q Consensus 722 e~a~ER~e~Lq~n~e~~r~E~~sL~~rn~eLs~~~~k~e~~l~~~~e~L~aaeel~~~L~~E~~nLKaEK~Llk~~E~RL 801 (2058)
+.+..+..-|...+...-+-+.+|.-...+.++--.+|+..|..+...|..|+..+.-....+.-|..+.+ ..|.+|
T Consensus 38 e~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id---~lEd~L 114 (155)
T 2efr_A 38 ELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSID---DLEDEL 114 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 34444555555555555556666766666666666778888888888898888876666666666655443 344555
Q ss_pred HHH
Q 045447 802 YDE 804 (2058)
Q Consensus 802 ~~E 804 (2058)
...
T Consensus 115 ~~~ 117 (155)
T 2efr_A 115 YAQ 117 (155)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 100
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=32.02 E-value=44 Score=30.10 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 045447 1346 NIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLL 1380 (2058)
Q Consensus 1346 riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l 1380 (2058)
.-++.||+.|+.++..|+.++..+.++++.+++.|
T Consensus 15 ~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 15 TPENPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999988877777776555433
No 101
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=31.96 E-value=1.4e+02 Score=29.92 Aligned_cols=24 Identities=21% Similarity=0.051 Sum_probs=9.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Q 045447 993 KKSLEDELHSLRKRVSELERENIL 1016 (2058)
Q Consensus 993 l~e~e~ei~~L~~ri~eLe~El~~ 1016 (2058)
+..++.....|+.++.+++..+..
T Consensus 14 ~~~Lq~~~~~LE~~l~e~E~~~~~ 37 (95)
T 3mov_A 14 YFQGQKESRACLERIQELEDLLAK 37 (95)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445555555544433
No 102
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=30.55 E-value=5.8e+02 Score=28.07 Aligned_cols=46 Identities=24% Similarity=0.403 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 045447 110 ERLTMEVAELHKSRRQLMELVEQKDLQHSEKGATIKAYLDKIINLT 155 (2058)
Q Consensus 110 erLr~ei~eLe~ekr~ll~llErk~~e~eel~e~l~~l~eKi~eL~ 155 (2058)
+.|+.++.+++.++..|-.-+..+...+-++...+.++.=.+..|.
T Consensus 99 e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~ 144 (170)
T 3l4q_C 99 ERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLR 144 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 5889999999999988887776665555555555555444444443
No 103
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=30.37 E-value=1.9e+02 Score=31.91 Aligned_cols=113 Identities=12% Similarity=0.190 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--HHc--ccchHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 413 SLAKIYAKYQEAVDALRHEQLGRKESEAVLQRVLYEL--EEK--AGIILDE-----RAEYERMVDAYSAINQKLQNFISE 483 (2058)
Q Consensus 413 SLTqlYt~Yve~k~qL~~Er~en~rLq~~Ld~Iv~EL--EeK--AP~L~eq-----R~EyErl~~~~~~Ls~~Leqa~~E 483 (2058)
-.-.+|.+|..+...+..-|.--.-.+..+.=|-..+ .+| +.+|.++ -.|.+++...+..|...|..+..-
T Consensus 32 ~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~~~qer~~~~~~~~f~~e~~~~E~~~l~~N~e~LksRL~~l~~s 111 (170)
T 3l4q_C 32 EYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKSSKEYLERFRREGNEKEMQRILLNSERLKSRIAEIHES 111 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTGGGSSSSSCCCSSSTTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467799999888777653322222222222111111 111 1112111 114456788888888899999889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 045447 484 KSSLEKTIQELKADLRMRERDYYLAQKEISDLQKQVTVLLKE 525 (2058)
Q Consensus 484 rd~leke~r~a~~~l~~~eREn~~Lk~Ql~DLsrQV~vLL~E 525 (2058)
+..+...++.-......++|+.+.|+=.+-.|.++=-..+.-
T Consensus 112 k~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~w 153 (170)
T 3l4q_C 112 RTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVW 153 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 999999999989999999999999999999998886555543
No 104
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=29.66 E-value=1.5e+02 Score=27.17 Aligned_cols=49 Identities=18% Similarity=0.342 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 462 EYERMVDAYSAINQKLQNFISEKSSLEKTIQELKADLRMRERDYYLAQK 510 (2058)
Q Consensus 462 EyErl~~~~~~Ls~~Leqa~~Erd~leke~r~a~~~l~~~eREn~~Lk~ 510 (2058)
||=.+.++.+.--.+.+++++=...+..++|.+++.+..++.||.-|++
T Consensus 14 eylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 14 EYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 4666777777778899999999999999999999999999999888774
No 105
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=29.55 E-value=4.2e+02 Score=26.06 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=22.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 940 LQVGKEELEKLKEEAQANREHMLQYKSIAQVNEAALKEME 979 (2058)
Q Consensus 940 L~~lk~ELe~lkeeL~~Ak~qveQYK~IAqsaEeaL~~l~ 979 (2058)
++..-..+..++.++.....++.++..--.-++..+.+|.
T Consensus 3 ~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~ 42 (107)
T 1fxk_A 3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555556666666666666555555555555554
No 106
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=29.51 E-value=7.6e+02 Score=30.49 Aligned_cols=44 Identities=16% Similarity=0.041 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045447 1418 RKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLK 1461 (2058)
Q Consensus 1418 l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k 1461 (2058)
++.+.++.+...+..+.+.+++.++++.+.+++..+.+++...+
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
T 3oja_A 426 QQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASAN 469 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcc
Confidence 34444444444444444444455555555555555555555443
No 107
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=29.33 E-value=3.1e+02 Score=26.73 Aligned_cols=47 Identities=11% Similarity=0.113 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 045447 1416 AARKLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLKQ 1462 (2058)
Q Consensus 1416 ~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k~ 1462 (2058)
.++..|+.+++.-+.++..++....+...+|..+...|.++++.|+.
T Consensus 27 Q~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 27 QSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45566667777777777777777777777888888888888888763
No 108
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=28.41 E-value=1.2e+02 Score=29.03 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 045447 969 QVNEAALKEMETVHENFRTRVEGVKKSLEDELHSLRKRVSELERENI 1015 (2058)
Q Consensus 969 qsaEeaL~~l~~~~e~yK~e~E~~l~e~e~ei~~L~~ri~eLe~El~ 1015 (2058)
...|+-+..|..+.+.+.+-+-..+.+..+-...|++||..|+..+.
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~ 49 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLK 49 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678888888888888888888888888888999999998887663
No 109
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=28.40 E-value=3.6e+02 Score=26.99 Aligned_cols=77 Identities=16% Similarity=0.243 Sum_probs=45.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 045447 1388 SQLEQELANSRLELSEKEKRLSDISQAEAARK---LEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLKQGK 1464 (2058)
Q Consensus 1388 ~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~---~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k~~~ 1464 (2058)
..|...|..+-.-+......|+.+..+.+.++ ..+..++..+.-++..+..=..-.+-+..+++.|+.++..+....
T Consensus 5 ~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~ 84 (94)
T 3jsv_C 5 EDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREF 84 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34444555555445555555555555555555 334455555555555555555666677778888888888877544
No 110
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=28.22 E-value=2.4e+02 Score=28.12 Aligned_cols=29 Identities=7% Similarity=-0.040 Sum_probs=19.8
Q ss_pred cchHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 045447 570 KDINGLVEQNVQLRSLVRNLSDQIESREM 598 (2058)
Q Consensus 570 kdI~ELQeQNqeLL~vvReLs~klE~eE~ 598 (2058)
.-|..||.+|..|-+.+|++-.....+-.
T Consensus 12 ~~~~~Lq~~~~~LE~~l~e~E~~~~~e~~ 40 (95)
T 3mov_A 12 NLYFQGQKESRACLERIQELEDLLAKEKD 40 (95)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778999999999999999988776543
No 111
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=28.10 E-value=4.2e+02 Score=25.71 Aligned_cols=59 Identities=24% Similarity=0.392 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 793 MLSNAEQRAYDEVRSLSQRVYRLQASLDTIQNAEEVREEARAAERRKQEEYIKQVEREWAEAKKEL 858 (2058)
Q Consensus 793 Llk~~E~RL~~EnesL~~e~~rLqs~L~tiQs~~e~REeses~~Rrrle~~Ie~LE~Els~lKkrL 858 (2058)
|+.+++..|... |.+...+-++.|+++..+.++..... .+++.-|.+|+++.+.+.+-+
T Consensus 4 llSAVeDKLRrr---l~E~~~q~qaEl~sLrrT~~EL~~G~----~KL~~mi~~l~~E~~~l~~ni 62 (78)
T 3iv1_A 4 LISAVSDKLRWR---MKEEMDRAQAELNALKRTEEDLKKGH----QKLEEMVTRLDQEVAEVDKNI 62 (78)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHH
Confidence 566777777654 45556667788888888876554443 456667777777666555443
No 112
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=28.08 E-value=4.7e+02 Score=28.18 Aligned_cols=54 Identities=9% Similarity=0.120 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1384 LDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQKRISAQLRRKCEMLS 1440 (2058)
Q Consensus 1384 ~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~~~k~~~e~~~ 1440 (2058)
...+..+-..|..-.++|..+..-+.+. ....+..+...+..+...|+++..+.
T Consensus 81 ~~~L~eYn~rL~~E~~dR~~L~~~L~~~---~~~~~~~l~e~e~~leeyK~Kl~rv~ 134 (152)
T 4fla_A 81 CLLLAEYNGRLAAELEDRRQLARMLVEY---TQNQKDVLSEKEKKLEEYKQKLARVT 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444 33334444444444444444444333
No 113
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=27.90 E-value=3.9e+02 Score=27.78 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhH
Q 045447 974 ALKEMETVHENFRTRVEGVKKSLEDELHSLRKRVSELERENILKS 1018 (2058)
Q Consensus 974 aL~~l~~~~e~yK~e~E~~l~e~e~ei~~L~~ri~eLe~El~~~~ 1018 (2058)
.+..|.-..+.+|.+++..+.+....|.+|+.+|..|+.++....
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667777777777778888888888888888888886644
No 114
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=27.80 E-value=1e+02 Score=26.50 Aligned_cols=32 Identities=31% Similarity=0.492 Sum_probs=24.9
Q ss_pred HHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 045447 985 FRTRVEGVKKSLEDELHSLRKRVSELERENIL 1016 (2058)
Q Consensus 985 yK~e~E~~l~e~e~ei~~L~~ri~eLe~El~~ 1016 (2058)
|-.++|...++++....+|+.||+-|.+|...
T Consensus 4 Yl~eLE~r~k~le~~naeLEervstLq~EN~m 35 (42)
T 2oqq_A 4 YLSELENRVKDLENKNSELEERLSTLQNENQM 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 66777778888888888888888877777654
No 115
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=27.16 E-value=3e+02 Score=27.34 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=35.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1301 DCDNLENLLRERQIEIEACKKEMEKQRMEKENLEKRVSEL 1340 (2058)
Q Consensus 1301 elepLe~~i~el~~elE~~~~Ei~~LqeE~~RWkqR~q~L 1340 (2058)
+...|+.....|..+++.+..|+..+..+++.|+++.+.|
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3667889999999999999999999999999999998765
No 116
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=26.78 E-value=7.6e+02 Score=28.21 Aligned_cols=31 Identities=16% Similarity=0.141 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHH-HHhHHHHHHhhHHHHH
Q 045447 1063 LKEDLEKEHERRQAA-QANYERQVILQSETIQ 1093 (2058)
Q Consensus 1063 l~~DL~~Q~~~a~eA-Q~nYErElvLHAe~Iq 1093 (2058)
.+++-......++.. ..-|+.+|..+...+|
T Consensus 191 a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~lQ 222 (305)
T 2efl_A 191 SKADYSSILQKFNHEQHEYYHTHIPNIFQKIQ 222 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444 3344444443333333
No 117
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=26.05 E-value=1.9e+02 Score=35.92 Aligned_cols=44 Identities=9% Similarity=0.074 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 045447 1419 KLEMEKQKRISAQLRRKCEMLSKEKEESIKENQSLARQLDDLKQ 1462 (2058)
Q Consensus 1419 ~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k~ 1462 (2058)
..++.++...+.........+...+..+...++.|+.+|..+..
T Consensus 90 l~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 90 IEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33444444444444444555555566666677777777777764
No 118
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=25.81 E-value=2e+02 Score=28.97 Aligned_cols=60 Identities=28% Similarity=0.277 Sum_probs=32.3
Q ss_pred HHHHHHHhhHHHHH-HHHHHhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1389 QLEQELANSRLELS-EKEKRLSDISQAEAARKLE---MEKQKRISAQLRRKCEMLSKEKEESIK 1448 (2058)
Q Consensus 1389 ~l~~~L~~~~~e~~-~le~k~~d~~~~~~~l~~e---~e~~~~~~~~~k~~~e~~~~e~~e~~~ 1448 (2058)
+++++|+..+..+. .-..-.+++..+++.|.++ +|.++..++.|++|+.-+..+++.+.+
T Consensus 29 QVQqELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F~~ 92 (96)
T 1t3j_A 29 QVQQEMATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENFSK 92 (96)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34556666555554 2233333444444444444 457778888888888888887766544
No 119
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=25.29 E-value=2.2e+02 Score=25.07 Aligned_cols=42 Identities=17% Similarity=0.323 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHH
Q 045447 971 NEAALKEMETVHENFRTRVEGVKKSLEDELHSLRKRVSELER 1012 (2058)
Q Consensus 971 aEeaL~~l~~~~e~yK~e~E~~l~e~e~ei~~L~~ri~eLe~ 1012 (2058)
.|+-+..|..+.|.+..-+-..+.+..+-...|++||..|+.
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~ 44 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467777777777777777778888888888888888888775
No 120
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=25.28 E-value=3.5e+02 Score=25.88 Aligned_cols=58 Identities=16% Similarity=0.188 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 045447 472 AINQKLQNFISEKSSLEKTIQELKADLRMRERDYYLAQKEISDLQKQVTVLLKECRDI 529 (2058)
Q Consensus 472 ~Ls~~Leqa~~Erd~leke~r~a~~~l~~~eREn~~Lk~Ql~DLsrQV~vLL~Ev~~~ 529 (2058)
.++.+|+.+..+...++..++.++.++....-+-..++.++.-+--+.-+=|+|++++
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~el 61 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTEL 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4566677777777777777777777777766666666666666666666666666653
No 121
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=25.21 E-value=3.2e+02 Score=25.73 Aligned_cols=44 Identities=5% Similarity=0.090 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 045447 877 KNAVKQVEEMGKELATALRAVASAETRAAVAETKLSDMEKRIRP 920 (2058)
Q Consensus 877 ~e~qkrid~l~~El~~~~eal~~aetr~~vle~rv~~Le~kL~~ 920 (2058)
.||+.+++++.......-..+..+...+..+...+..|+..|.+
T Consensus 31 ~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 31 EWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 48888888887665555555655555555566666666665543
No 122
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=24.67 E-value=2.3e+02 Score=36.68 Aligned_cols=164 Identities=14% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1267 LNLLRESNVQLREENKYNFEECQKLREVAQKTKSDCDNLENLL------------RERQIEIEACKKEMEKQRMEKENLE 1334 (2058)
Q Consensus 1267 LNlLRESN~tLReE~~~~~~k~qkL~e~lqk~~~elepLe~~i------------~el~~elE~~~~Ei~~LqeE~~RWk 1334 (2058)
++++.+.....|--+.--.-.++.+ ++++.-+....++ .+..-+...+...+..++++..+|+
T Consensus 281 ~~lc~~~H~ff~~~r~~d~~e~qqm-----~~~a~e~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (575)
T 2i1j_A 281 LALCMGNHELYMRRRKPDTIDVQQM-----KAQAREEKLAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQ 355 (575)
T ss_dssp HHHHHHHHHHHHHHTSCCCHHHHHH-----HHHHHHHHHHHHHHHTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHH
Q 045447 1335 KRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQA 1414 (2058)
Q Consensus 1335 qR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~ 1414 (2058)
+++.+-...+..|.++++....+...+..........++.|+..-.....++..|+.++.++...
T Consensus 356 ---------------~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~ 420 (575)
T 2i1j_A 356 ---------------ANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEE 420 (575)
T ss_dssp ---------------HHHHHHHHC--------------------------------------------------------
T ss_pred ---------------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1415 EAARKLEMEKQKRISAQLRRKCEMLSKEKEESIKEN 1450 (2058)
Q Consensus 1415 ~~~l~~e~e~~~~~~~~~k~~~e~~~~e~~e~~~e~ 1450 (2058)
..-+..+.+.--.++..|+.++........+...++
T Consensus 421 ~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l 456 (575)
T 2i1j_A 421 VSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAAL 456 (575)
T ss_dssp ---------------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 123
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=23.93 E-value=6e+02 Score=27.37 Aligned_cols=74 Identities=18% Similarity=0.225 Sum_probs=46.2
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 8 EEMSRLSNDAAAVAAKADAYIRYLQTDFETVKARADA---AAITAEQTCSLLEQKFISLQEEFSKVESQNAQLQKSL 81 (2058)
Q Consensus 8 eEl~~~~~~~~~i~~K~e~~i~~l~~el~t~KA~~e~---~~i~aEQ~~~~lEqk~~sl~~e~~~le~e~~eL~~~l 81 (2058)
++-..+...|..-..++..|+..|..++..=+.-... +.....+.+.+.+.++.+++.++.++..-..+|+..+
T Consensus 68 ~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi 144 (152)
T 4fla_A 68 EAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHI 144 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455554445678888888888888765544433 4444555666667777777777766666665555443
No 124
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=23.86 E-value=2.7e+02 Score=27.02 Aligned_cols=52 Identities=23% Similarity=0.295 Sum_probs=42.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 045447 105 KDGEIERLTMEVAELHKSRRQLMELVEQKDLQHSEKGATIKAYLDKIINLTD 156 (2058)
Q Consensus 105 ~dseverLr~ei~eLe~ekr~ll~llErk~~e~eel~e~l~~l~eKi~eL~~ 156 (2058)
..+|+.+|+.=-.+|...+..|-.+|.+-..+..++...+..|.+|..+|..
T Consensus 23 ~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 23 AQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666668899999999999999999999998889888888877753
No 125
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=23.66 E-value=8.5e+02 Score=28.21 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Q 045447 1058 VQVSALKEDLEKEHERRQAAQANYERQVILQSETIQELT 1096 (2058)
Q Consensus 1058 ~q~~~l~~DL~~Q~~~a~eAQ~nYErElvLHAe~IqeL~ 1096 (2058)
..+....++-......++.++..|+.+|..+-..+|.|-
T Consensus 206 ~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~Q~le 244 (312)
T 3abh_A 206 QDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFE 244 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 334445566666666666667777766555555554443
No 126
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=23.55 E-value=5e+02 Score=32.21 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 045447 476 KLQNFISEKSSLEKTIQELKADLRMRERDYYLAQKEISDLQKQVTVLL 523 (2058)
Q Consensus 476 ~Leqa~~Erd~leke~r~a~~~l~~~eREn~~Lk~Ql~DLsrQV~vLL 523 (2058)
.....+.++..++..+......+..++.....++..+..|..+|-.|.
T Consensus 85 ~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 85 KSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333344444444443333334444444444444555555555555443
No 127
>3r45_C Holliday junction recognition protein; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=23.52 E-value=61 Score=30.88 Aligned_cols=23 Identities=17% Similarity=0.521 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC
Q 045447 1324 EKQRMEKENLEKRVSELLQRCRN 1346 (2058)
Q Consensus 1324 ~~LqeE~~RWkqR~q~LLeKy~r 1346 (2058)
..|++-+.|++.|.+.||+||+.
T Consensus 21 ~kLr~sr~RFQ~~Mq~lieKYn~ 43 (81)
T 3r45_C 21 QKLRASRRRFQRRMQRLIEKYNQ 43 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC
Confidence 45677888999999999999985
No 128
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=23.49 E-value=1e+02 Score=24.27 Aligned_cols=23 Identities=35% Similarity=0.356 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Q 045447 1441 KEKEESIKENQSLARQLDDLKQG 1463 (2058)
Q Consensus 1441 ~e~~e~~~e~~~l~~q~~~~k~~ 1463 (2058)
++...+.+++..|+=.|.++|||
T Consensus 9 qeiaalkkeiaalkfeiaalkqg 31 (33)
T 4dzn_A 9 QEIAALKKEIAALKFEIAALKQG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 44444444555555555555554
No 129
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=23.02 E-value=3.3e+02 Score=24.31 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045447 52 TCSLLEQKFISLQEEFSKVESQNAQLQKSLDDRVNELAEVQSQKHQLHLQ 101 (2058)
Q Consensus 52 ~~~~lEqk~~sl~~e~~~le~e~~eL~~~l~~~~~Ela~~q~~~~~L~~~ 101 (2058)
+...++..+.++...+.........++..+.+....+..+...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 6 TKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777777777777777776666666666666665544
No 130
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=22.90 E-value=5.3e+02 Score=25.18 Aligned_cols=41 Identities=12% Similarity=0.179 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045447 474 NQKLQNFISEKSSLEKTIQELKADLRMRERDYYLAQKEISD 514 (2058)
Q Consensus 474 s~~Leqa~~Erd~leke~r~a~~~l~~~eREn~~Lk~Ql~D 514 (2058)
+..|.........+++.++.+......+..+...++.++.+
T Consensus 30 ~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 30 SREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444433
No 131
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=22.55 E-value=6.2e+02 Score=25.72 Aligned_cols=56 Identities=16% Similarity=0.301 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcchhHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 045447 1436 CEMLSKEKEESIKENQSLARQLDDLKQGKKSTGDVTGEQVMKEKEEKDTRIQILERTVERQREELKK 1502 (2058)
Q Consensus 1436 ~e~~~~e~~e~~~e~~~l~~q~~~~k~~~~~~~~~~~~q~~ke~~~~~~~~~~~~~~~e~~~~~~~~ 1502 (2058)
+-..++...++...+..|..+|..++ .++.....++-..|..+...|+.-.++|..
T Consensus 17 L~~~~q~~~e~e~~k~eL~~~~~~~~-----------~~~~~k~~eq~~~le~lk~eL~~~~~el~~ 72 (107)
T 2no2_A 17 VSMARQAQVDLEREKKELEDSLERIS-----------DQGQRKTQEQLEVLESLKQELATSQRELQV 72 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666777778888888888877 122222223555666666666554444433
No 132
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=22.33 E-value=6.8e+02 Score=26.08 Aligned_cols=56 Identities=14% Similarity=0.268 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHhHHHHHHHHHHHH
Q 045447 952 EEAQANREHMLQYKSIAQVNEAALKEMETVH--ENFRTRVEGVKKSLEDELHSLRKRV 1007 (2058)
Q Consensus 952 eeL~~Ak~qveQYK~IAqsaEeaL~~l~~~~--e~yK~e~E~~l~e~e~ei~~L~~ri 1007 (2058)
...+.|......|..|-...++.+..+...- --|+.++....+...+..++|..+|
T Consensus 34 a~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~keLd~~i 91 (119)
T 3etw_A 34 AQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDALKKLEAEM 91 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666666667777666542 1244444444444444444444444
No 133
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=22.17 E-value=1.6e+02 Score=26.20 Aligned_cols=50 Identities=28% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhHHHHH
Q 045447 1257 IKSLKLQVRELNLLRESNVQLREENKYNFEECQKLREVAQKTKSDCDNLENLL 1309 (2058)
Q Consensus 1257 hkeLmeKleqLNlLRESN~tLReE~~~~~~k~qkL~e~lqk~~~elepLe~~i 1309 (2058)
+..|..||+ .|+=-|..||-|..-+...+.+|+.+.-.++.-+-.|++.|
T Consensus 5 YdQL~~QVe---~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~~i 54 (54)
T 1deb_A 5 YDQLLKQVE---ALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQGSI 54 (54)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHH---HHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcccC
No 134
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=22.17 E-value=1.7e+02 Score=28.04 Aligned_cols=46 Identities=26% Similarity=0.301 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhh
Q 045447 1352 YDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANS 1397 (2058)
Q Consensus 1352 ~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~ 1397 (2058)
+..|+..+..--++|+.++.-+....+.|.++...|+.|+..|.+.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444544544444555555555555555555555556555555544
No 135
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=21.37 E-value=1.2e+02 Score=28.48 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 698 DDLGKARSEIIALRSERDKLALEAEFAREKLDSVMREAEHQKVEVNG 744 (2058)
Q Consensus 698 eql~k~r~El~~LrsE~~K~s~q~e~a~ER~e~Lq~n~e~~r~E~~s 744 (2058)
.++..++.|+..|+.|...+++|.+||. +..|...+.-+..|+..
T Consensus 6 ~~~~~l~~E~~~lk~E~~stSaQDeFAK--WaKL~Rk~DKl~~ele~ 50 (65)
T 3sja_C 6 KKYLAKVKERHELKEFNNSISAQDNYAK--WTKNNRKLDSLDKEINN 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTTHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 3455677888888888888899999996 65555554444444433
No 136
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=21.19 E-value=7.3e+02 Score=26.00 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=13.2
Q ss_pred HHHHHHhHHHHHHhHHHHHHHHHHHHH
Q 045447 982 HENFRTRVEGVKKSLEDELHSLRKRVS 1008 (2058)
Q Consensus 982 ~e~yK~e~E~~l~e~e~ei~~L~~ri~ 1008 (2058)
+..++.++...+.+++..+.+|.+-|.
T Consensus 65 ~~~~~~EL~~~l~sie~dLeDLe~sI~ 91 (130)
T 4dnd_A 65 LDWTTNELRNGLRSIEWDLEDLEETIG 91 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555544444
No 137
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.95 E-value=6.2e+02 Score=25.12 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045447 1128 SKWELEKSVLEKLKNEAEEKYDEVNEQNKILHSRLEALHIQLT 1170 (2058)
Q Consensus 1128 ~SWeeqk~~Le~Ei~el~~R~eDL~~QN~LLH~QLE~lt~Qia 1170 (2058)
..|...-..+..++..+..++.+|..+-.-|-..++.+..++.
T Consensus 60 ~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 60 EHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777788888888888888888888888888888777664
No 138
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=20.95 E-value=8.4e+02 Score=29.82 Aligned_cols=106 Identities=14% Similarity=0.206 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 045447 1351 DYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKLDTISQLEQELANSRLELSEKEKRLSDISQAEAARKLEMEKQKRISA 1430 (2058)
Q Consensus 1351 E~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~~~~~~l~~~L~~~~~e~~~le~k~~d~~~~~~~l~~e~e~~~~~~~ 1430 (2058)
+|.+|-.+...+..+++-|...++.++...+.-..++. +.++..+-.-++...++.-. +...+....+.++..+.
T Consensus 141 ~~~~~~~~~~~~~~e~~~k~~a~~af~~~~~~f~~q~~-~~e~~~~~~~~~~~~~~~~~----e~~~~~~n~~~l~~~~~ 215 (373)
T 3hhm_B 141 EYDRLYEEYTRTSQEIQMKRTAIEAFNETIKIFEEQCQ-TQERYSKEYIEKFKREGNEK----EIQRIMHNYDKLKSRIS 215 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTTTTCCS----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhhhhhhhcChH----HHHHHHHhHHHHHHHHH
Confidence 34444444444444444555566666655554444442 22221111111111222111 22334444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045447 1431 QLRRKCEMLSKEKEESIKENQSLARQLDDLK 1461 (2058)
Q Consensus 1431 ~~k~~~e~~~~e~~e~~~e~~~l~~q~~~~k 1461 (2058)
.++.....+.+++......+-.+.+++..+|
T Consensus 216 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lk 246 (373)
T 3hhm_B 216 EIIDSRRRLEEDLKKQAAEYREIDKRMNSIK 246 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 5555555555555555555555555555555
No 139
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.54 E-value=1.1e+02 Score=27.65 Aligned_cols=29 Identities=34% Similarity=0.507 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 1135 SVLEKLKNEAEEKYDEVNEQNKILHSRLE 1163 (2058)
Q Consensus 1135 ~~Le~Ei~el~~R~eDL~~QN~LLH~QLE 1163 (2058)
..|..|+.+++.|++.|..+|.-|..+|+
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778888888888888888887777664
No 140
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=20.40 E-value=5.1e+02 Score=29.60 Aligned_cols=208 Identities=16% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhhhcHHHHHHH-HHHH-HHHH-HHHHhhHHHHHHhhhhHHHHH-HHHHHHHHhhhhhhhHHHHH
Q 045447 1234 ENAQASLTTERANSRAMLLTEEEIKSL-KLQV-RELN-LLRESNVQLREENKYNFEECQ-KLREVAQKTKSDCDNLENLL 1309 (2058)
Q Consensus 1234 dEar~~L~~Ere~s~t~~~s~e~hkeL-meKl-eqLN-lLRESN~tLReE~~~~~~k~q-kL~e~lqk~~~elepLe~~i 1309 (2058)
+-....+.+=..++...+. .+ --+| .+|| +|.++=..|-.....+.+++. -..+.-.++....+.|...|
T Consensus 13 ~~~~~Y~~q~~~sa~~~~~------~~~~s~l~~ql~~~~~d~~~~l~~~~~~l~~~l~p~~ee~~~~l~~~~~~lr~~l 86 (243)
T 2a01_A 13 DLATVYVDVLKDSGRDYVS------QFEGSALGKQLNLKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEM 86 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHH------HHHHHHHHCSSCCSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhHHHHHH------HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHhhHHHHHHHHHH
Q ss_pred H----HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 045447 1310 R----ERQIEIEACKKEM-EKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEIEETRNLLSTKL 1384 (2058)
Q Consensus 1310 ~----el~~elE~~~~Ei-~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~e~~~~~l~~~~ 1384 (2058)
. ++...++-+-.++ ..+....+-.+.|..-++++| ..++...++.|+..|.-...++- ....
T Consensus 87 ~kd~ee~r~~l~Py~~el~~~~~~~~eelr~~L~P~~eel-------~~~~~~~~eel~~~L~p~~eelr------~kl~ 153 (243)
T 2a01_A 87 SKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAEL-------QEGARQKLHELQEKLSPLGEEMR------DRAR 153 (243)
T ss_dssp SCCSSCSSTTHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-------HHHHHHHHHHHCCSCCSSTHHHH------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------HHHHHhhHHHHHHHHHhHHHHHH------HHHH
Q ss_pred hHHHHHHHHHHhhHHHHH-HHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 045447 1385 DTISQLEQELANSRLELS-EKEKRLSDISQAEAARKLEME-KQKRISAQLRRKCEMLSKEKEE-SIKENQSLARQLDDL 1460 (2058)
Q Consensus 1385 ~~~~~l~~~L~~~~~e~~-~le~k~~d~~~~~~~l~~e~e-~~~~~~~~~k~~~e~~~~e~~e-~~~e~~~l~~q~~~~ 1460 (2058)
..|..+++.|.-...++. .+.+++.++....+-.-.++. ++...+..++.++.-+..++.. +.-=.+.++.++..+
T Consensus 154 ~~veelk~~l~P~~ee~r~kl~~~~~el~~~l~p~~~e~~~kl~~~~e~lr~~l~p~~e~lk~~l~p~~e~~~~~l~~~ 232 (243)
T 2a01_A 154 AHVDALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQGLLPVLESFKVSFLSA 232 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCHHHHHHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHH
Done!