Query 045447
Match_columns 2058
No_of_seqs 158 out of 177
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 23:38:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045447.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045447hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gqea_ e.38.1.1 (A:) Polypept 57.2 45 0.0033 37.9 14.2 64 221-290 4-69 (362)
2 d2efla1 a.238.1.4 (A:1-288) Fo 52.8 1.4E+02 0.0099 31.1 20.0 17 1064-1080 187-203 (288)
3 d1fxka_ a.2.5.1 (A:) Prefoldin 44.8 54 0.004 30.6 10.3 20 1415-1434 67-86 (107)
4 d1fxka_ a.2.5.1 (A:) Prefoldin 42.7 87 0.0063 29.1 11.4 39 941-979 4-42 (107)
5 d1seta1 a.2.7.1 (A:1-110) Sery 27.5 1.4E+02 0.01 27.6 10.1 54 1320-1373 34-87 (110)
6 d1seta1 a.2.7.1 (A:1-110) Sery 21.0 3E+02 0.022 25.2 12.7 17 1346-1362 24-40 (110)
7 d1s35a1 a.7.1.1 (A:1063-1168) 13.3 3.9E+02 0.029 23.2 9.9 62 1078-1139 41-104 (106)
8 d1wu9a1 a.245.1.1 (A:191-249) 13.1 96 0.007 26.5 4.5 29 620-648 4-32 (59)
9 d1u5pa1 a.7.1.1 (A:1662-1771) 11.5 2.9E+02 0.021 24.3 8.1 80 13-93 30-109 (110)
10 d1gqea_ e.38.1.1 (A:) Polypept 11.4 5.3E+02 0.039 28.5 11.8 100 1309-1408 1-114 (362)
No 1
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=57.20 E-value=45 Score=37.85 Aligned_cols=64 Identities=14% Similarity=0.296 Sum_probs=35.0
Q ss_pred HHhhHHHHHHHHHHhhhh--hhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 221 MSAKLSDVERQFSECSSS--LNWNKERVRELEIKLSSLQEEFCSSKDAAAANEERFSTELSTVNKLVELYKE 290 (2058)
Q Consensus 221 l~aki~eLqre~~E~~ss--L~~sk~rv~eLe~Kl~~lqe~L~~~ke~~a~~ee~fr~EL~aq~RLaeLyke 290 (2058)
+..+|.+|...+..+..- +...+.|+.+|+.++..= ++-. |. ..-..+-+|+.....+++.|..
T Consensus 4 l~~~i~eL~~rl~~Lr~~fDld~kk~Rl~ELE~~lsdP--~fW~--D~--~kAqkl~KE~s~L~~iVe~~~~ 69 (362)
T d1gqea_ 4 VNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQP--DVWN--EP--ERAQALGKERSSLEAVVDTLDQ 69 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSG--GGGG--SH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCC--hhhh--CH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666553 344466677776554321 1110 00 1122556788888888888854
No 2
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.82 E-value=1.4e+02 Score=31.09 Aligned_cols=17 Identities=18% Similarity=0.149 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 045447 1064 KEDLEKEHERRQAAQAN 1080 (2058)
Q Consensus 1064 ~~DL~~Q~~~a~eAQ~n 1080 (2058)
.++.......++.++..
T Consensus 187 ~~~Y~~~v~~~n~~~~~ 203 (288)
T d2efla1 187 KADYSSILQKFNHEQHE 203 (288)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444444444
No 3
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=44.78 E-value=54 Score=30.63 Aligned_cols=20 Identities=10% Similarity=0.121 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045447 1415 EAARKLEMEKQKRISAQLRR 1434 (2058)
Q Consensus 1415 ~~~l~~e~e~~~~~~~~~k~ 1434 (2058)
..+|+..++.+...+..+..
T Consensus 67 ~~~l~~~~e~l~~~i~~l~~ 86 (107)
T d1fxka_ 67 TEELQEKLETLQLREKTIER 86 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445455544444444443
No 4
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=42.69 E-value=87 Score=29.12 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=25.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 941 QVGKEELEKLKEEAQANREHMLQYKSIAQVNEAALKEME 979 (2058)
Q Consensus 941 ~~lk~ELe~lkeeL~~Ak~qveQYK~IAqsaEeaL~~l~ 979 (2058)
+..-..+..+..++....+++.++..--.-++-.|..|.
T Consensus 4 qe~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~ 42 (107)
T d1fxka_ 4 QHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666777777777777777666666666666665
No 5
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=27.55 E-value=1.4e+02 Score=27.61 Aligned_cols=54 Identities=9% Similarity=0.212 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhhHHH
Q 045447 1320 KKEMEKQRMEKENLEKRVSELLQRCRNIDVEDYDRLKVEVRQMEEKLSGKNAEI 1373 (2058)
Q Consensus 1320 ~~Ei~~LqeE~~RWkqR~q~LLeKy~riDPeE~e~Lk~Eie~Le~~L~~~~ae~ 1373 (2058)
..+...++.+.+.|+.+-+.+=...+...+++...|+.++..|..++..+..++
T Consensus 34 d~~rr~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~ 87 (110)
T d1seta1 34 DREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEAL 87 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555666665555555566677776666666666665554444444
No 6
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=20.98 E-value=3e+02 Score=25.20 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=7.2
Q ss_pred CCCHHHHHHHHHHHHHH
Q 045447 1346 NIDVEDYDRLKVEVRQM 1362 (2058)
Q Consensus 1346 riDPeE~e~Lk~Eie~L 1362 (2058)
.+|...+-.|-.+...+
T Consensus 24 ~~~ld~i~~ld~~rr~l 40 (110)
T d1seta1 24 ALDLEALLALDREVQEL 40 (110)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 45544444444333333
No 7
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.30 E-value=3.9e+02 Score=23.18 Aligned_cols=62 Identities=15% Similarity=0.201 Sum_probs=38.1
Q ss_pred HHhHHHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 045447 1078 QANYERQVILQSETIQELTKTSQALASLQ--EQASELRKLADALKAENSELKSKWELEKSVLEK 1139 (2058)
Q Consensus 1078 Q~nYErElvLHAe~IqeL~k~~e~~~~lq--~e~~elr~~aesak~~L~e~e~SWeeqk~~Le~ 1139 (2058)
...+..+|..|-..+..+....+.+-... .....++.........+......|..++..|+.
T Consensus 41 h~~l~~ei~~~~~~~~~~~~~g~~L~~~~~~~~~~~I~~~l~~L~~~w~~L~~~~~~R~~~Le~ 104 (106)
T d1s35a1 41 HAGIKDEIDGHQDSYQRVKESGEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQ 104 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666553221 234455666666666777777788888777765
No 8
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.12 E-value=96 Score=26.49 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 045447 620 AAVLDRAEEQGRMIESLHTSVAMYKRLYE 648 (2058)
Q Consensus 620 ~~l~e~~eeQ~~miESl~keRDMyR~Ll~ 648 (2058)
..|..+..+....++++-++||+|-.=|.
T Consensus 4 ~~L~~ei~elk~~v~~lEkERdFYF~KLR 32 (59)
T d1wu9a1 4 AELMQQVNVLKLTVEDLEKERDFYFGKLR 32 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555668999999999954333
No 9
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=11.49 E-value=2.9e+02 Score=24.34 Aligned_cols=80 Identities=13% Similarity=0.145 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045447 13 LSNDAAAVAAKADAYIRYLQTDFETVKARADAAAITAEQTCSLLEQKFISLQEEFSKVESQNAQLQKSLDDRVNELAEVQ 92 (2058)
Q Consensus 13 ~~~~~~~i~~K~e~~i~~l~~el~t~KA~~e~~~i~aEQ~~~~lEqk~~sl~~e~~~le~e~~eL~~~l~~~~~Ela~~q 92 (2058)
+|+|+..|...+..+ ..|..+++.-+...+...-.+++.+.........++..+..+......|...+..+..-|..+.
T Consensus 30 ~g~d~~~~~~~~~~h-~~~~~ei~~~~~~i~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~R~~~L~ea~ 108 (110)
T d1u5pa1 30 YGKDLASVNNLLKKH-QLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESH 108 (110)
T ss_dssp CCSSHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q ss_pred H
Q 045447 93 S 93 (2058)
Q Consensus 93 ~ 93 (2058)
.
T Consensus 109 ~ 109 (110)
T d1u5pa1 109 R 109 (110)
T ss_dssp H
T ss_pred C
No 10
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=11.37 E-value=5.3e+02 Score=28.51 Aligned_cols=100 Identities=15% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhcCCC----CHHHHHHHHHHHHHHHH------HHhhhhHHHHHH
Q 045447 1309 LRERQIEIEACKKEMEKQRM--EKENLEKRVSELLQRCRNI----DVEDYDRLKVEVRQMEE------KLSGKNAEIEET 1376 (2058)
Q Consensus 1309 i~el~~elE~~~~Ei~~Lqe--E~~RWkqR~q~LLeKy~ri----DPeE~e~Lk~Eie~Le~------~L~~~~ae~e~~ 1376 (2058)
|.++...+..+..-+..|+. |.+..+.|...|=.+...- ||..+.+|-.++..|+. .+.....++..+
T Consensus 1 ~~~l~~~i~eL~~rl~~Lr~~fDld~kk~Rl~ELE~~lsdP~fW~D~~kAqkl~KE~s~L~~iVe~~~~l~~~leDl~eL 80 (362)
T d1gqea_ 1 INPVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGL 80 (362)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCChhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hhhhhhhh--hHHHHHHHHHHhhHHHHHHHHHHh
Q 045447 1377 RNLLSTKL--DTISQLEQELANSRLELSEKEKRL 1408 (2058)
Q Consensus 1377 ~~~l~~~~--~~~~~l~~~L~~~~~e~~~le~k~ 1408 (2058)
........ ..+..+...|..+...+..++..+
T Consensus 81 ~Ela~ee~deel~~e~~~~l~~l~~~l~~le~~l 114 (362)
T d1gqea_ 81 LELAVEADDEETFNEAVAELDALEEKLAQLEFRR 114 (362)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHhhhhhHHHHhh
Done!