BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045448
         (1756 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4EQI|A Chain A, Crystal Structure Of Serratia Fonticola Carbapenemase Sfc-1
 pdb|4EQI|B Chain B, Crystal Structure Of Serratia Fonticola Carbapenemase Sfc-1
          Length = 283

 Score = 30.8 bits (68), Expect = 7.2,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 1540 NTSVRSQSKAVESKNPFSELEIEKELGVDKLEVSSSNADTNKEGSKRKILERLASDAQKL 1599
            N  +R  ++ +E  +P +E +I    G+   E+S++    +  G+   +LE+L    + +
Sbjct: 70   NQRIRYDNRVMEPHSPVTEKQITT--GMTVAELSAATLQYSDNGAANLLLEKLIGGPEGM 127

Query: 1600 TSLQTTVQD 1608
            TS   ++ D
Sbjct: 128  TSFMRSIGD 136


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.309    0.127    0.330 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,962,350
Number of Sequences: 62578
Number of extensions: 1672330
Number of successful extensions: 5710
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 86
Number of HSP's that attempted gapping in prelim test: 5315
Number of HSP's gapped (non-prelim): 411
length of query: 1756
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1644
effective length of database: 7,964,601
effective search space: 13093804044
effective search space used: 13093804044
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (27.3 bits)