Query 045448
Match_columns 1756
No_of_seqs 187 out of 200
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 13:22:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045448.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045448hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4674 Uncharacterized conser 99.9 1.5E-15 3.3E-20 200.7 130.0 880 425-1351 334-1366(1822)
2 KOG0161 Myosin class II heavy 99.9 1.4E-13 3E-18 185.4 122.3 698 321-1063 976-1728(1930)
3 KOG4674 Uncharacterized conser 99.9 2.2E-12 4.8E-17 171.4 131.0 1093 181-1354 50-1362(1822)
4 KOG0161 Myosin class II heavy 99.9 3.6E-12 7.9E-17 172.0 125.0 147 942-1107 1447-1594(1930)
5 PF07765 KIP1: KIP1-like prote 99.9 4.9E-24 1.1E-28 198.1 5.3 52 1-52 23-74 (74)
6 TIGR00606 rad50 rad50. This fa 99.8 8.7E-09 1.9E-13 140.3 108.4 116 504-624 545-660 (1311)
7 TIGR02168 SMC_prok_B chromosom 99.8 5.6E-10 1.2E-14 148.0 92.4 30 601-630 675-704 (1179)
8 TIGR02169 SMC_prok_A chromosom 99.8 1.5E-10 3.2E-15 153.8 86.7 17 904-920 1022-1038(1164)
9 TIGR02168 SMC_prok_B chromosom 99.7 1.4E-09 3.1E-14 144.1 92.5 54 867-920 998-1052(1179)
10 TIGR00606 rad50 rad50. This fa 99.7 2.3E-08 4.9E-13 136.3 105.4 128 735-866 825-959 (1311)
11 TIGR02169 SMC_prok_A chromosom 99.7 5.9E-09 1.3E-13 138.9 93.4 111 664-774 676-786 (1164)
12 COG1196 Smc Chromosome segrega 99.6 6.1E-07 1.3E-11 121.4 94.0 222 607-835 671-906 (1163)
13 PRK02224 chromosome segregatio 99.6 2.5E-08 5.4E-13 130.7 75.2 142 318-459 260-401 (880)
14 PRK02224 chromosome segregatio 99.6 2.6E-08 5.7E-13 130.5 74.1 60 534-593 531-590 (880)
15 PF10174 Cast: RIM-binding pro 99.6 7.5E-08 1.6E-12 123.7 72.7 174 379-552 238-411 (775)
16 COG1196 Smc Chromosome segrega 99.5 1.9E-06 4.1E-11 116.7 93.3 242 318-559 234-486 (1163)
17 PRK03918 chromosome segregatio 99.5 5.1E-07 1.1E-11 118.4 78.1 109 717-826 611-724 (880)
18 PRK03918 chromosome segregatio 99.5 2.1E-06 4.4E-11 112.8 77.1 41 697-737 659-699 (880)
19 PF10174 Cast: RIM-binding pro 99.4 8.8E-06 1.9E-10 105.2 74.3 114 400-513 287-400 (775)
20 KOG0612 Rho-associated, coiled 99.3 1.3E-05 2.9E-10 104.4 65.4 79 659-738 918-999 (1317)
21 PRK01156 chromosome segregatio 99.2 8.6E-05 1.9E-09 98.4 76.8 21 321-341 303-323 (895)
22 PRK01156 chromosome segregatio 99.2 0.00014 3.1E-09 96.4 72.3 44 321-364 195-238 (895)
23 PF01576 Myosin_tail_1: Myosin 99.1 1E-11 2.2E-16 161.6 1.7 481 453-1000 325-855 (859)
24 KOG0996 Structural maintenance 99.1 0.00038 8.3E-09 91.2 67.7 108 630-737 903-1010(1293)
25 KOG4643 Uncharacterized coiled 98.9 0.0006 1.3E-08 88.2 57.7 362 411-795 174-558 (1195)
26 KOG0250 DNA repair protein RAD 98.9 0.0011 2.3E-08 87.2 61.2 253 307-559 356-809 (1074)
27 PF01576 Myosin_tail_1: Myosin 98.9 2.3E-10 5E-15 149.2 0.0 101 382-482 176-276 (859)
28 PF09730 BicD: Microtubule-ass 98.9 0.0016 3.4E-08 84.2 58.7 523 319-918 23-707 (717)
29 PF05701 WEMBL: Weak chloropla 98.8 0.0015 3.3E-08 82.4 58.9 140 473-612 277-416 (522)
30 KOG0996 Structural maintenance 98.8 0.0026 5.7E-08 83.8 79.6 564 211-785 267-1030(1293)
31 PF12128 DUF3584: Protein of u 98.8 0.0059 1.3E-07 84.0 88.0 510 231-799 312-869 (1201)
32 PF07888 CALCOCO1: Calcium bin 98.7 0.00028 6E-09 88.2 44.6 116 608-765 341-457 (546)
33 PF07888 CALCOCO1: Calcium bin 98.7 0.00057 1.2E-08 85.5 45.7 82 499-587 372-457 (546)
34 KOG0978 E3 ubiquitin ligase in 98.7 0.0045 9.7E-08 79.5 63.6 220 537-784 397-625 (698)
35 PRK04863 mukB cell division pr 98.6 0.012 2.6E-07 81.9 85.9 117 418-538 562-678 (1486)
36 KOG4643 Uncharacterized coiled 98.6 0.0083 1.8E-07 78.2 60.4 59 179-237 173-231 (1195)
37 KOG0933 Structural maintenance 98.6 0.0096 2.1E-07 77.8 72.2 171 709-879 792-1000(1174)
38 PF05701 WEMBL: Weak chloropla 98.6 0.0076 1.6E-07 76.4 59.7 62 345-406 131-192 (522)
39 KOG0971 Microtubule-associated 98.6 0.0024 5.2E-08 81.9 46.3 179 188-370 229-422 (1243)
40 PF15070 GOLGA2L5: Putative go 98.5 0.0023 4.9E-08 82.1 46.0 302 509-834 171-491 (617)
41 PF00261 Tropomyosin: Tropomyo 98.5 0.00013 2.8E-09 83.4 31.2 143 218-360 15-157 (237)
42 KOG0978 E3 ubiquitin ligase in 98.5 0.014 3E-07 75.2 64.4 549 300-913 53-624 (698)
43 PF05557 MAD: Mitotic checkpoi 98.5 5.7E-07 1.2E-11 116.3 13.0 71 182-255 60-130 (722)
44 KOG0962 DNA repair protein RAD 98.4 0.03 6.4E-07 75.8 92.9 262 1022-1334 818-1079(1294)
45 PF12128 DUF3584: Protein of u 98.4 0.043 9.4E-07 75.8 82.6 135 705-842 719-859 (1201)
46 PF00261 Tropomyosin: Tropomyo 98.3 0.00052 1.1E-08 78.5 29.4 208 179-414 11-218 (237)
47 KOG0612 Rho-associated, coiled 98.3 0.054 1.2E-06 72.5 65.7 173 368-578 612-787 (1317)
48 PF05557 MAD: Mitotic checkpoi 98.3 4.7E-06 1E-10 108.1 13.0 76 596-671 336-429 (722)
49 COG0419 SbcC ATPase involved i 98.2 0.071 1.5E-06 71.8 81.0 83 776-863 690-772 (908)
50 PRK04778 septation ring format 98.2 0.067 1.5E-06 68.6 46.2 223 177-408 106-339 (569)
51 KOG0964 Structural maintenance 98.1 0.09 1.9E-06 69.0 65.6 260 178-445 186-498 (1200)
52 PRK04863 mukB cell division pr 98.1 0.15 3.3E-06 71.5 82.6 597 419-1062 440-1120(1486)
53 KOG4593 Mitotic checkpoint pro 98.1 0.093 2E-06 67.2 61.1 29 709-737 557-585 (716)
54 PRK04778 septation ring format 98.1 0.1 2.2E-06 67.0 51.7 182 436-617 276-462 (569)
55 PF05911 DUF869: Plant protein 98.0 0.19 4E-06 66.5 66.7 556 208-839 21-692 (769)
56 KOG0977 Nuclear envelope prote 97.9 0.019 4.2E-07 72.4 34.5 237 382-649 123-388 (546)
57 PF00038 Filament: Intermediat 97.9 0.078 1.7E-06 62.6 37.7 86 216-308 52-137 (312)
58 KOG4593 Mitotic checkpoint pro 97.9 0.19 4E-06 64.7 60.8 135 688-829 382-519 (716)
59 KOG0980 Actin-binding protein 97.9 0.22 4.8E-06 65.1 44.1 134 179-340 329-462 (980)
60 KOG0977 Nuclear envelope prote 97.9 0.063 1.4E-06 68.0 37.6 95 481-578 293-387 (546)
61 COG0419 SbcC ATPase involved i 97.9 0.32 6.9E-06 65.8 74.4 56 715-770 583-643 (908)
62 KOG0933 Structural maintenance 97.8 0.3 6.4E-06 64.8 79.8 312 675-1006 683-1021(1174)
63 PF00038 Filament: Intermediat 97.8 0.066 1.4E-06 63.1 35.0 237 609-858 67-307 (312)
64 KOG0995 Centromere-associated 97.8 0.22 4.9E-06 62.9 41.1 294 188-489 233-565 (581)
65 KOG0976 Rho/Rac1-interacting s 97.8 0.26 5.7E-06 63.6 61.2 314 183-513 85-408 (1265)
66 PF05483 SCP-1: Synaptonemal c 97.8 0.28 6.1E-06 62.9 88.8 584 363-1056 174-772 (786)
67 PHA02562 46 endonuclease subun 97.7 0.021 4.5E-07 72.1 30.9 74 178-254 176-249 (562)
68 PHA02562 46 endonuclease subun 97.7 0.012 2.5E-07 74.4 28.4 183 250-443 217-401 (562)
69 KOG0971 Microtubule-associated 97.7 0.36 7.7E-06 63.2 40.2 115 534-660 491-619 (1243)
70 PF06160 EzrA: Septation ring 97.7 0.38 8.2E-06 61.9 46.5 390 177-594 102-504 (560)
71 PF05622 HOOK: HOOK protein; 97.7 8.7E-06 1.9E-10 105.5 0.0 90 489-582 313-405 (713)
72 KOG0976 Rho/Rac1-interacting s 97.7 0.45 9.8E-06 61.5 54.6 143 550-692 319-461 (1265)
73 KOG1029 Endocytic adaptor prot 97.7 0.15 3.2E-06 65.7 35.2 180 289-475 424-607 (1118)
74 PF14915 CCDC144C: CCDC144C pr 97.6 0.26 5.5E-06 58.4 40.3 190 323-519 63-263 (305)
75 PF15070 GOLGA2L5: Putative go 97.6 0.49 1.1E-05 61.5 48.2 95 607-711 411-513 (617)
76 KOG0250 DNA repair protein RAD 97.6 0.63 1.4E-05 62.7 70.5 75 761-835 826-907 (1074)
77 PF09726 Macoilin: Transmembra 97.5 0.16 3.6E-06 66.6 35.1 153 186-359 421-581 (697)
78 PF05622 HOOK: HOOK protein; 97.5 2.3E-05 5E-10 101.6 0.0 177 479-695 241-417 (713)
79 PF09787 Golgin_A5: Golgin sub 97.5 0.42 9E-06 60.9 37.0 33 491-523 399-431 (511)
80 KOG0963 Transcription factor/C 97.5 0.73 1.6E-05 59.0 42.8 165 388-581 237-403 (629)
81 PF06160 EzrA: Septation ring 97.5 0.78 1.7E-05 59.2 52.6 221 440-692 276-501 (560)
82 KOG0962 DNA repair protein RAD 97.4 1.5 3.3E-05 60.3 95.8 46 653-698 674-720 (1294)
83 KOG0018 Structural maintenance 97.3 1.5 3.2E-05 59.1 64.3 65 186-252 204-268 (1141)
84 KOG0995 Centromere-associated 97.3 1 2.3E-05 57.2 43.9 127 237-371 233-359 (581)
85 KOG4673 Transcription factor T 97.3 1.1 2.5E-05 57.5 66.2 282 324-628 475-786 (961)
86 PRK11637 AmiB activator; Provi 97.3 0.32 7E-06 60.4 31.7 74 181-254 45-118 (428)
87 PF09726 Macoilin: Transmembra 97.2 0.17 3.6E-06 66.5 29.4 80 384-470 444-523 (697)
88 COG4372 Uncharacterized protei 97.2 0.53 1.1E-05 57.1 30.6 154 321-478 121-274 (499)
89 PF07111 HCR: Alpha helical co 97.2 1.6 3.4E-05 56.8 64.5 352 319-725 165-542 (739)
90 PRK11637 AmiB activator; Provi 97.1 0.29 6.3E-06 60.8 29.8 40 267-306 47-86 (428)
91 KOG0946 ER-Golgi vesicle-tethe 97.1 0.41 8.9E-06 62.3 30.8 126 562-704 807-932 (970)
92 KOG0994 Extracellular matrix g 97.1 2.2 4.8E-05 57.5 48.1 182 392-580 1510-1701(1758)
93 PF12718 Tropomyosin_1: Tropom 97.1 0.049 1.1E-06 58.6 19.6 131 307-437 5-138 (143)
94 PF05667 DUF812: Protein of un 97.1 0.74 1.6E-05 59.7 33.0 185 175-364 320-525 (594)
95 COG1340 Uncharacterized archae 97.0 1.2 2.6E-05 53.1 32.1 187 281-468 34-226 (294)
96 COG1340 Uncharacterized archae 97.0 1.2 2.7E-05 53.0 34.5 174 240-414 49-228 (294)
97 KOG0946 ER-Golgi vesicle-tethe 97.0 0.18 3.9E-06 65.4 26.3 221 420-672 736-959 (970)
98 KOG1003 Actin filament-coating 96.9 0.79 1.7E-05 51.7 26.8 120 237-363 2-121 (205)
99 KOG2129 Uncharacterized conser 96.9 1.6 3.4E-05 53.6 31.1 46 435-483 278-323 (552)
100 PF05911 DUF869: Plant protein 96.7 4.2 9E-05 54.4 56.5 184 610-807 516-699 (769)
101 PF07111 HCR: Alpha helical co 96.7 3.8 8.3E-05 53.4 66.1 333 321-653 195-601 (739)
102 KOG4673 Transcription factor T 96.6 4 8.6E-05 52.9 63.6 201 506-736 613-830 (961)
103 PF14662 CCDC155: Coiled-coil 96.6 1.3 2.9E-05 49.9 26.1 172 178-360 10-181 (193)
104 PF09755 DUF2046: Uncharacteri 96.5 3 6.5E-05 50.2 35.9 266 186-480 23-296 (310)
105 PF15066 CAGE1: Cancer-associa 96.5 1.7 3.6E-05 54.2 28.1 134 321-458 336-469 (527)
106 COG1579 Zn-ribbon protein, pos 96.5 0.73 1.6E-05 53.7 24.0 103 291-414 34-138 (239)
107 PF05667 DUF812: Protein of un 96.5 4.8 0.0001 52.6 33.8 185 324-515 395-588 (594)
108 KOG0018 Structural maintenance 96.5 6.3 0.00014 53.5 63.6 107 469-577 394-501 (1141)
109 COG4372 Uncharacterized protei 96.4 3.6 7.8E-05 50.4 30.8 170 422-591 117-289 (499)
110 PF05483 SCP-1: Synaptonemal c 96.4 5.3 0.00012 52.0 91.3 137 369-508 258-401 (786)
111 PF10473 CENP-F_leu_zip: Leuci 96.4 0.33 7.2E-06 52.3 19.4 111 382-520 6-116 (140)
112 PF09755 DUF2046: Uncharacteri 96.4 3.4 7.4E-05 49.7 33.3 60 534-596 230-289 (310)
113 PF14662 CCDC155: Coiled-coil 96.4 2.5 5.4E-05 47.8 26.6 126 262-398 38-163 (193)
114 KOG0963 Transcription factor/C 96.4 5.3 0.00012 51.6 41.7 39 268-306 60-98 (629)
115 COG1579 Zn-ribbon protein, pos 96.3 0.67 1.5E-05 53.9 22.1 114 355-473 28-141 (239)
116 KOG0994 Extracellular matrix g 96.2 8.9 0.00019 52.3 53.1 88 569-666 1655-1742(1758)
117 PF15619 Lebercilin: Ciliary p 96.2 2.5 5.5E-05 48.0 25.7 122 345-470 48-171 (194)
118 PF04849 HAP1_N: HAP1 N-termin 96.1 0.63 1.4E-05 55.7 21.5 124 657-787 162-296 (306)
119 PF09730 BicD: Microtubule-ass 96.0 9.3 0.0002 50.9 60.7 174 401-581 266-460 (717)
120 KOG0964 Structural maintenance 96.0 10 0.00022 51.2 76.1 144 885-1058 853-1005(1200)
121 KOG1029 Endocytic adaptor prot 95.9 9.5 0.00021 50.3 34.7 131 356-500 435-565 (1118)
122 COG5185 HEC1 Protein involved 95.8 8 0.00017 48.5 36.8 50 182-231 263-315 (622)
123 KOG0980 Actin-binding protein 95.8 12 0.00026 50.2 37.0 76 293-386 384-459 (980)
124 COG5185 HEC1 Protein involved 95.7 8.7 0.00019 48.3 36.2 53 412-464 485-537 (622)
125 KOG1003 Actin filament-coating 95.7 5.1 0.00011 45.5 26.7 145 181-360 2-146 (205)
126 TIGR03185 DNA_S_dndD DNA sulfu 95.6 13 0.00027 49.2 39.0 43 372-414 391-435 (650)
127 PF15619 Lebercilin: Ciliary p 95.5 4 8.7E-05 46.4 23.9 136 500-638 49-192 (194)
128 PRK09039 hypothetical protein; 95.4 1.3 2.9E-05 53.9 21.1 116 332-447 62-184 (343)
129 PF10473 CENP-F_leu_zip: Leuci 95.4 1.9 4.1E-05 46.7 19.6 75 382-456 27-101 (140)
130 PF09728 Taxilin: Myosin-like 95.3 9.6 0.00021 46.2 40.3 93 371-484 215-307 (309)
131 PF12718 Tropomyosin_1: Tropom 95.3 2.1 4.6E-05 46.4 19.7 40 375-414 97-136 (143)
132 PF14915 CCDC144C: CCDC144C pr 95.2 9.6 0.00021 45.8 41.8 94 377-470 156-249 (305)
133 COG3883 Uncharacterized protei 95.1 9 0.00019 45.5 25.4 51 321-371 167-217 (265)
134 KOG0999 Microtubule-associated 95.0 15 0.00033 47.0 62.6 55 499-557 157-211 (772)
135 KOG0243 Kinesin-like protein [ 95.0 22 0.00049 48.8 53.6 124 383-506 438-561 (1041)
136 COG4477 EzrA Negative regulato 95.0 16 0.00034 46.9 49.4 193 510-737 352-546 (570)
137 TIGR03185 DNA_S_dndD DNA sulfu 94.9 19 0.00041 47.6 40.6 27 658-684 476-502 (650)
138 PF09728 Taxilin: Myosin-like 94.9 12 0.00027 45.2 39.6 163 333-502 117-290 (309)
139 PRK10929 putative mechanosensi 94.8 27 0.00059 48.9 44.2 58 542-599 260-317 (1109)
140 TIGR02680 conserved hypothetic 94.8 31 0.00068 49.5 35.1 16 44-59 560-575 (1353)
141 PRK10929 putative mechanosensi 94.8 28 0.00061 48.8 37.7 27 320-346 106-132 (1109)
142 PRK09039 hypothetical protein; 94.6 3.9 8.5E-05 50.0 22.0 62 379-440 123-184 (343)
143 PF08614 ATG16: Autophagy prot 94.5 0.45 9.7E-06 53.4 12.9 150 258-435 22-179 (194)
144 PLN02939 transferase, transfer 94.5 10 0.00022 52.0 26.8 127 598-735 221-368 (977)
145 KOG2991 Splicing regulator [RN 94.5 13 0.00029 43.7 28.4 50 216-265 120-169 (330)
146 PF09789 DUF2353: Uncharacteri 94.5 16 0.00035 44.6 30.4 209 471-692 66-298 (319)
147 PF09789 DUF2353: Uncharacteri 94.1 11 0.00024 45.9 23.9 106 270-375 75-185 (319)
148 PF08614 ATG16: Autophagy prot 94.1 0.44 9.5E-06 53.5 11.7 24 35-58 17-40 (194)
149 PF08317 Spc7: Spc7 kinetochor 94.1 18 0.0004 43.9 26.6 120 606-735 173-293 (325)
150 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.8 6.8 0.00015 41.7 19.2 25 281-305 10-34 (132)
151 PF13851 GAS: Growth-arrest sp 93.7 5.1 0.00011 45.7 19.2 107 676-793 27-133 (201)
152 PF15397 DUF4618: Domain of un 93.6 20 0.00044 42.6 25.7 133 409-557 8-144 (258)
153 PRK11281 hypothetical protein; 93.4 49 0.0011 46.6 44.0 39 421-459 285-323 (1113)
154 PF07926 TPR_MLP1_2: TPR/MLP1/ 92.8 15 0.00033 39.1 19.9 86 329-414 9-94 (132)
155 KOG1853 LIS1-interacting prote 92.7 15 0.00033 43.1 20.7 133 327-497 49-184 (333)
156 KOG1853 LIS1-interacting prote 92.6 27 0.00058 41.2 22.6 39 318-356 86-124 (333)
157 PF13851 GAS: Growth-arrest sp 92.3 25 0.00054 40.3 27.2 133 240-397 28-161 (201)
158 TIGR03007 pepcterm_ChnLen poly 92.3 19 0.00041 45.7 23.3 31 196-226 160-190 (498)
159 TIGR00634 recN DNA repair prot 92.2 33 0.00072 44.6 25.8 30 420-449 345-374 (563)
160 TIGR01005 eps_transp_fam exopo 92.2 17 0.00038 48.5 23.9 77 188-264 185-262 (754)
161 COG4942 Membrane-bound metallo 92.1 42 0.0009 42.5 28.2 12 324-335 95-106 (420)
162 PF04849 HAP1_N: HAP1 N-termin 92.1 35 0.00076 41.5 28.4 142 375-526 163-304 (306)
163 PRK11281 hypothetical protein; 92.1 72 0.0016 45.1 39.1 13 241-253 62-74 (1113)
164 KOG0982 Centrosomal protein Nu 92.1 28 0.0006 43.7 22.9 132 429-591 298-433 (502)
165 COG3883 Uncharacterized protei 91.6 36 0.00078 40.7 26.0 48 178-225 33-80 (265)
166 TIGR02680 conserved hypothetic 91.6 90 0.0019 45.1 35.3 24 431-454 924-947 (1353)
167 TIGR03007 pepcterm_ChnLen poly 91.5 24 0.00051 44.8 23.0 25 466-490 351-375 (498)
168 KOG0999 Microtubule-associated 91.2 57 0.0012 42.2 68.2 116 779-917 596-721 (772)
169 COG4942 Membrane-bound metallo 91.1 53 0.0011 41.6 31.0 48 177-224 39-86 (420)
170 PF12325 TMF_TATA_bd: TATA ele 91.0 7.8 0.00017 41.2 15.1 45 416-460 70-114 (120)
171 smart00787 Spc7 Spc7 kinetocho 91.0 16 0.00035 44.4 19.8 44 434-477 217-260 (312)
172 KOG0979 Structural maintenance 91.0 81 0.0018 43.5 57.0 107 701-825 596-704 (1072)
173 PF10267 Tmemb_cc2: Predicted 90.3 23 0.0005 44.5 20.5 94 178-277 214-308 (395)
174 PF06008 Laminin_I: Laminin Do 89.9 47 0.001 39.1 30.0 60 182-248 23-82 (264)
175 PF04156 IncA: IncA protein; 89.9 14 0.0003 41.0 16.8 59 382-440 126-184 (191)
176 TIGR01005 eps_transp_fam exopo 89.7 36 0.00077 45.7 23.3 9 25-33 12-20 (754)
177 TIGR03017 EpsF chain length de 89.7 56 0.0012 40.8 23.6 38 191-228 165-202 (444)
178 KOG4360 Uncharacterized coiled 89.5 33 0.00073 43.9 20.8 104 318-456 200-303 (596)
179 PF13514 AAA_27: AAA domain 89.3 1.2E+02 0.0026 42.9 90.4 96 703-799 672-775 (1111)
180 PF05010 TACC: Transforming ac 89.3 48 0.001 38.4 29.2 68 319-386 40-111 (207)
181 KOG0804 Cytoplasmic Zn-finger 88.9 7.9 0.00017 48.5 14.9 81 718-798 347-427 (493)
182 PF00769 ERM: Ezrin/radixin/mo 88.8 22 0.00047 41.9 18.0 76 293-368 3-78 (246)
183 PF00769 ERM: Ezrin/radixin/mo 88.8 20 0.00042 42.3 17.6 118 355-472 9-126 (246)
184 PF04012 PspA_IM30: PspA/IM30 88.3 47 0.001 37.9 19.9 96 319-414 87-186 (221)
185 PF10481 CENP-F_N: Cenp-F N-te 88.1 16 0.00036 43.4 16.0 99 535-633 83-192 (307)
186 PF10168 Nup88: Nuclear pore c 87.6 43 0.00092 45.2 21.6 33 427-459 638-670 (717)
187 PF15254 CCDC14: Coiled-coil d 87.4 39 0.00084 45.2 20.1 218 1040-1337 340-563 (861)
188 PF10212 TTKRSYEDQ: Predicted 87.0 80 0.0017 41.0 22.3 37 419-455 478-514 (518)
189 PF14073 Cep57_CLD: Centrosome 87.0 61 0.0013 36.9 19.4 160 750-913 1-171 (178)
190 PF11559 ADIP: Afadin- and alp 86.4 37 0.0008 36.7 16.8 67 355-421 56-122 (151)
191 PF06818 Fez1: Fez1; InterPro 86.1 34 0.00075 39.4 16.9 175 540-714 10-201 (202)
192 KOG0804 Cytoplasmic Zn-finger 85.8 27 0.00059 44.1 17.0 78 337-414 347-424 (493)
193 PF04156 IncA: IncA protein; 85.7 14 0.00031 41.0 13.7 99 534-639 89-187 (191)
194 PF13166 AAA_13: AAA domain 85.7 1.4E+02 0.003 39.8 27.0 39 322-360 362-400 (712)
195 PRK10869 recombination and rep 85.7 1.3E+02 0.0029 39.4 26.2 29 421-449 341-369 (553)
196 PRK10361 DNA recombination pro 85.7 1.2E+02 0.0027 39.1 23.7 69 430-501 62-131 (475)
197 KOG1899 LAR transmembrane tyro 85.3 83 0.0018 41.4 21.0 89 354-446 107-199 (861)
198 PF06785 UPF0242: Uncharacteri 85.1 72 0.0016 39.2 19.4 6 489-494 246-251 (401)
199 TIGR01843 type_I_hlyD type I s 84.7 1.1E+02 0.0023 37.6 24.7 10 267-276 88-97 (423)
200 KOG1899 LAR transmembrane tyro 84.1 27 0.00058 45.5 16.2 29 261-289 105-133 (861)
201 KOG4360 Uncharacterized coiled 84.0 1E+02 0.0022 39.8 20.8 45 186-230 86-130 (596)
202 PF10498 IFT57: Intra-flagella 83.8 35 0.00075 42.4 16.9 79 364-442 265-356 (359)
203 PF12325 TMF_TATA_bd: TATA ele 83.7 29 0.00063 37.0 14.0 94 231-342 22-115 (120)
204 PF04111 APG6: Autophagy prote 83.7 15 0.00032 44.7 13.6 9 374-382 28-36 (314)
205 PF12795 MscS_porin: Mechanose 83.6 96 0.0021 36.2 21.7 22 286-307 43-64 (240)
206 PF05010 TACC: Transforming ac 83.5 96 0.0021 36.1 29.6 50 181-230 7-56 (207)
207 KOG0982 Centrosomal protein Nu 83.0 1.5E+02 0.0032 37.8 30.9 131 323-462 250-380 (502)
208 PF15066 CAGE1: Cancer-associa 82.9 1.5E+02 0.0033 38.0 27.7 24 382-405 449-472 (527)
209 PF09738 DUF2051: Double stran 82.8 13 0.00029 45.0 12.6 63 721-783 80-142 (302)
210 PF08317 Spc7: Spc7 kinetochor 82.2 1.3E+02 0.0029 36.8 29.1 15 531-545 274-288 (325)
211 PF15450 DUF4631: Domain of un 82.1 1.7E+02 0.0037 38.1 56.9 95 301-400 19-113 (531)
212 KOG0243 Kinesin-like protein [ 81.9 2.4E+02 0.0053 39.6 55.7 104 396-513 407-512 (1041)
213 PF13870 DUF4201: Domain of un 81.9 91 0.002 34.7 23.4 80 320-401 95-174 (177)
214 PF09787 Golgin_A5: Golgin sub 81.5 1.8E+02 0.0039 37.8 35.1 84 298-382 158-248 (511)
215 PF13166 AAA_13: AAA domain 80.8 2.1E+02 0.0045 38.2 26.5 22 462-483 498-519 (712)
216 TIGR00634 recN DNA repair prot 80.7 2E+02 0.0043 37.8 26.0 27 418-444 350-376 (563)
217 PF12777 MT: Microtubule-bindi 80.6 1.5E+02 0.0033 36.5 21.5 88 327-414 218-305 (344)
218 PF06005 DUF904: Protein of un 80.0 19 0.00041 35.2 10.2 34 548-581 5-38 (72)
219 PRK15422 septal ring assembly 79.7 17 0.00037 36.2 9.8 36 547-582 4-39 (79)
220 PF10146 zf-C4H2: Zinc finger- 79.6 37 0.0008 39.9 14.3 78 325-402 3-83 (230)
221 PF06005 DUF904: Protein of un 79.6 28 0.00061 34.1 11.2 67 378-444 3-69 (72)
222 PF14992 TMCO5: TMCO5 family 79.6 48 0.001 40.0 15.3 56 318-373 118-173 (280)
223 PF04111 APG6: Autophagy prote 78.7 33 0.00072 41.8 14.2 23 342-364 14-36 (314)
224 KOG1937 Uncharacterized conser 78.7 2E+02 0.0044 36.8 36.2 35 330-364 345-379 (521)
225 PF06008 Laminin_I: Laminin Do 78.6 1.5E+02 0.0032 35.1 29.6 59 468-529 158-216 (264)
226 KOG0239 Kinesin (KAR3 subfamil 78.5 1.7E+02 0.0036 39.6 21.3 87 435-521 227-316 (670)
227 PF04012 PspA_IM30: PspA/IM30 78.0 1.3E+02 0.0029 34.3 20.3 44 191-234 31-74 (221)
228 PF14988 DUF4515: Domain of un 77.5 1.5E+02 0.0032 34.5 20.9 108 659-772 75-196 (206)
229 PF11559 ADIP: Afadin- and alp 77.4 1.1E+02 0.0024 33.1 16.7 70 381-457 54-123 (151)
230 PF15397 DUF4618: Domain of un 77.2 1.7E+02 0.0037 35.2 29.4 104 368-491 41-145 (258)
231 KOG0249 LAR-interacting protei 76.3 2.9E+02 0.0062 37.4 21.6 41 320-360 67-107 (916)
232 KOG4809 Rab6 GTPase-interactin 76.2 2.6E+02 0.0056 36.7 44.7 137 373-518 325-469 (654)
233 PLN02939 transferase, transfer 76.1 3.5E+02 0.0076 38.1 32.5 90 323-414 271-365 (977)
234 KOG0239 Kinesin (KAR3 subfamil 75.9 2.6E+02 0.0057 37.8 22.1 103 325-445 184-286 (670)
235 PF10481 CENP-F_N: Cenp-F N-te 75.5 2E+02 0.0043 34.9 18.8 84 322-406 94-189 (307)
236 PRK10246 exonuclease subunit S 75.2 3.8E+02 0.0082 38.1 79.5 26 717-742 776-801 (1047)
237 PF10168 Nup88: Nuclear pore c 75.1 1.7E+02 0.0037 39.8 20.3 12 196-207 564-575 (717)
238 PRK15422 septal ring assembly 74.7 23 0.00049 35.3 9.1 62 530-591 15-76 (79)
239 COG3074 Uncharacterized protei 73.8 32 0.0007 33.6 9.6 36 547-582 4-39 (79)
240 KOG3850 Predicted membrane pro 73.5 2.6E+02 0.0056 35.4 21.8 77 178-254 262-339 (455)
241 PF09738 DUF2051: Double stran 73.4 9.6 0.00021 46.1 7.8 143 1097-1250 102-250 (302)
242 PF15294 Leu_zip: Leucine zipp 72.6 99 0.0021 37.4 15.5 74 181-254 130-205 (278)
243 KOG0249 LAR-interacting protei 71.5 3.7E+02 0.0081 36.4 22.3 41 374-414 197-237 (916)
244 PRK10869 recombination and rep 71.5 3.4E+02 0.0073 35.9 24.2 26 201-226 154-179 (553)
245 PRK10698 phage shock protein P 71.2 2.1E+02 0.0046 33.4 22.1 49 186-234 27-75 (222)
246 KOG0288 WD40 repeat protein Ti 70.8 78 0.0017 39.9 14.4 80 175-254 12-91 (459)
247 PF15035 Rootletin: Ciliary ro 70.6 1.7E+02 0.0037 33.4 16.1 99 405-520 65-163 (182)
248 PF10146 zf-C4H2: Zinc finger- 70.4 80 0.0017 37.2 13.9 68 240-307 33-100 (230)
249 PF11932 DUF3450: Protein of u 70.1 1.7E+02 0.0037 34.4 16.8 59 356-414 40-98 (251)
250 COG2433 Uncharacterized conser 69.7 72 0.0016 42.0 14.3 20 259-278 351-370 (652)
251 COG1842 PspA Phage shock prote 69.4 2.4E+02 0.0052 33.3 21.4 57 319-375 88-144 (225)
252 PLN03229 acetyl-coenzyme A car 69.0 4.3E+02 0.0094 36.1 23.6 14 349-362 576-589 (762)
253 PF12777 MT: Microtubule-bindi 68.6 3E+02 0.0064 34.1 21.1 37 178-214 10-46 (344)
254 PF13514 AAA_27: AAA domain 68.5 5.2E+02 0.011 36.9 86.9 52 176-231 150-201 (1111)
255 smart00787 Spc7 Spc7 kinetocho 68.5 2.9E+02 0.0064 34.0 28.3 19 498-516 239-257 (312)
256 KOG1962 B-cell receptor-associ 67.9 71 0.0015 37.3 12.6 96 321-442 112-207 (216)
257 PF02994 Transposase_22: L1 tr 67.1 12 0.00027 46.3 7.0 107 749-862 80-186 (370)
258 PF10498 IFT57: Intra-flagella 66.2 2E+02 0.0044 36.0 16.9 40 375-414 223-262 (359)
259 PF15254 CCDC14: Coiled-coil d 66.0 4.9E+02 0.011 35.7 23.8 39 491-529 508-546 (861)
260 PF09304 Cortex-I_coil: Cortex 65.8 1.8E+02 0.004 30.8 13.8 62 765-830 7-68 (107)
261 PRK10884 SH3 domain-containing 65.6 65 0.0014 37.3 11.8 19 264-282 90-108 (206)
262 PF10186 Atg14: UV radiation r 65.4 2.8E+02 0.006 32.6 20.2 82 381-466 22-108 (302)
263 COG2433 Uncharacterized conser 65.0 95 0.0021 40.9 14.1 8 167-174 311-318 (652)
264 PF13870 DUF4201: Domain of un 64.6 2.4E+02 0.0051 31.5 21.2 87 372-458 42-128 (177)
265 PRK10884 SH3 domain-containing 64.5 99 0.0021 35.9 13.0 40 409-448 127-166 (206)
266 PF04912 Dynamitin: Dynamitin 64.5 3.7E+02 0.0081 33.7 25.2 74 633-707 208-285 (388)
267 PF04582 Reo_sigmaC: Reovirus 64.1 10 0.00022 46.2 5.4 96 265-360 33-128 (326)
268 COG3074 Uncharacterized protei 63.1 53 0.0012 32.2 8.7 59 530-588 15-73 (79)
269 TIGR01010 BexC_CtrB_KpsE polys 62.6 3.7E+02 0.0081 33.1 18.5 130 715-847 174-305 (362)
270 TIGR03017 EpsF chain length de 62.3 4.1E+02 0.0088 33.4 25.2 40 321-360 259-298 (444)
271 PF10186 Atg14: UV radiation r 61.5 3.2E+02 0.007 32.0 20.2 7 488-494 148-154 (302)
272 PF05384 DegS: Sensor protein 61.0 2.8E+02 0.0061 31.2 21.7 97 188-305 4-101 (159)
273 PF14073 Cep57_CLD: Centrosome 60.4 3.1E+02 0.0068 31.5 21.6 56 404-459 117-172 (178)
274 TIGR03319 YmdA_YtgF conserved 60.0 5.3E+02 0.011 34.0 21.5 29 467-495 146-174 (514)
275 PF10267 Tmemb_cc2: Predicted 59.9 4.5E+02 0.0097 33.6 18.3 36 179-214 208-243 (395)
276 KOG2129 Uncharacterized conser 59.8 4.8E+02 0.01 33.4 22.7 27 184-210 100-127 (552)
277 KOG0288 WD40 repeat protein Ti 59.5 3.1E+02 0.0067 35.0 16.5 67 342-408 11-77 (459)
278 PF07058 Myosin_HC-like: Myosi 59.5 2E+02 0.0042 35.4 14.4 76 605-684 2-81 (351)
279 PLN03229 acetyl-coenzyme A car 58.6 6.5E+02 0.014 34.6 26.0 104 561-670 597-703 (762)
280 PF10234 Cluap1: Clusterin-ass 57.9 2.5E+02 0.0055 34.0 15.1 88 318-405 171-258 (267)
281 COG4026 Uncharacterized protei 57.9 2E+02 0.0042 34.0 13.5 51 261-311 129-179 (290)
282 COG4477 EzrA Negative regulato 56.2 6.1E+02 0.013 33.6 47.9 142 499-653 383-525 (570)
283 PF10046 BLOC1_2: Biogenesis o 55.9 2.5E+02 0.0054 28.9 14.1 36 319-354 62-97 (99)
284 TIGR01000 bacteriocin_acc bact 55.8 5.5E+02 0.012 32.9 24.4 7 26-32 11-17 (457)
285 PRK11519 tyrosine kinase; Prov 55.0 2.8E+02 0.0061 37.6 16.7 75 704-778 260-336 (719)
286 KOG4807 F-actin binding protei 55.0 5.5E+02 0.012 32.6 28.9 31 552-582 508-540 (593)
287 TIGR01000 bacteriocin_acc bact 54.7 5.7E+02 0.012 32.7 22.0 30 341-370 94-123 (457)
288 KOG0993 Rab5 GTPase effector R 53.6 5.9E+02 0.013 32.6 38.0 79 670-757 442-521 (542)
289 KOG2751 Beclin-like protein [S 52.8 3.3E+02 0.0071 35.0 15.3 67 422-488 198-264 (447)
290 KOG4677 Golgi integral membran 52.0 6.5E+02 0.014 32.6 33.7 39 207-245 209-251 (554)
291 PF14197 Cep57_CLD_2: Centroso 51.4 1.2E+02 0.0026 29.7 9.2 32 383-414 16-47 (69)
292 PF04102 SlyX: SlyX; InterPro 51.3 70 0.0015 30.9 7.6 51 377-427 2-52 (69)
293 COG4026 Uncharacterized protei 51.1 1.1E+02 0.0024 35.8 10.3 26 422-447 178-203 (290)
294 PF10212 TTKRSYEDQ: Predicted 50.9 7.2E+02 0.016 32.8 21.1 95 739-833 420-514 (518)
295 PF10046 BLOC1_2: Biogenesis o 50.0 2.4E+02 0.0053 29.0 11.7 80 751-831 12-91 (99)
296 PF05276 SH3BP5: SH3 domain-bi 49.6 5.3E+02 0.011 30.9 29.4 52 177-231 8-59 (239)
297 PF05266 DUF724: Protein of un 49.4 2.9E+02 0.0064 31.8 13.4 80 374-467 105-184 (190)
298 KOG4809 Rab6 GTPase-interactin 48.6 8E+02 0.017 32.6 36.8 266 419-722 125-412 (654)
299 PF07106 TBPIP: Tat binding pr 48.6 1.4E+02 0.003 33.1 10.5 116 697-836 37-168 (169)
300 PF14992 TMCO5: TMCO5 family 47.9 1.9E+02 0.0041 35.2 12.0 118 505-626 4-132 (280)
301 PF05266 DUF724: Protein of un 47.8 2.8E+02 0.0062 31.9 13.0 57 376-432 128-184 (190)
302 PF14197 Cep57_CLD_2: Centroso 47.3 99 0.0021 30.2 7.9 59 717-775 4-62 (69)
303 PF11932 DUF3450: Protein of u 46.5 4.9E+02 0.011 30.7 15.1 85 653-737 19-103 (251)
304 PF12795 MscS_porin: Mechanose 46.4 5.5E+02 0.012 30.1 25.5 39 240-286 19-57 (240)
305 COG1842 PspA Phage shock prote 46.1 5.7E+02 0.012 30.3 21.9 52 340-391 27-78 (225)
306 PRK09841 cryptic autophosphory 45.4 4.5E+02 0.0098 35.7 16.4 76 701-776 257-334 (726)
307 PRK12704 phosphodiesterase; Pr 45.2 8.7E+02 0.019 32.1 22.7 64 435-498 117-183 (520)
308 PF14817 HAUS5: HAUS augmin-li 44.8 9.7E+02 0.021 32.5 31.4 94 877-986 345-438 (632)
309 PF08581 Tup_N: Tup N-terminal 44.6 2.2E+02 0.0048 28.6 10.1 60 779-842 9-68 (79)
310 PRK09841 cryptic autophosphory 44.5 6.3E+02 0.014 34.4 17.5 25 416-440 372-396 (726)
311 KOG2010 Double stranded RNA bi 43.3 1.6E+02 0.0034 36.3 10.4 70 715-784 108-178 (405)
312 PRK12704 phosphodiesterase; Pr 43.0 9.3E+02 0.02 31.8 20.0 56 429-490 104-159 (520)
313 TIGR02977 phageshock_pspA phag 42.4 6.1E+02 0.013 29.5 21.2 48 188-235 29-76 (219)
314 PRK10698 phage shock protein P 42.3 6.3E+02 0.014 29.7 21.7 47 303-349 100-146 (222)
315 PF10205 KLRAQ: Predicted coil 41.9 3E+02 0.0064 29.1 10.8 65 325-389 7-71 (102)
316 PF04102 SlyX: SlyX; InterPro 41.7 1.1E+02 0.0023 29.7 7.3 40 321-360 2-41 (69)
317 PRK00846 hypothetical protein; 41.2 1.6E+02 0.0034 29.6 8.4 52 370-421 4-55 (77)
318 PF00170 bZIP_1: bZIP transcri 40.9 26 0.00056 32.9 3.0 39 1308-1346 24-62 (64)
319 PF08647 BRE1: BRE1 E3 ubiquit 40.8 4.2E+02 0.0091 27.2 12.9 63 282-344 11-73 (96)
320 PF06785 UPF0242: Uncharacteri 40.2 8.5E+02 0.019 30.6 24.1 29 442-470 194-225 (401)
321 PF03999 MAP65_ASE1: Microtubu 40.0 34 0.00074 45.2 5.0 74 469-549 206-280 (619)
322 PF04582 Reo_sigmaC: Reovirus 39.6 45 0.00098 41.0 5.4 38 323-360 56-93 (326)
323 COG4694 Uncharacterized protei 39.6 2.1E+02 0.0045 37.7 11.1 56 844-911 425-480 (758)
324 PF03999 MAP65_ASE1: Microtubu 38.8 1.3E+02 0.0029 39.8 10.0 249 239-494 142-401 (619)
325 PRK11519 tyrosine kinase; Prov 38.7 1.1E+03 0.023 32.2 18.4 39 191-229 261-299 (719)
326 PRK04325 hypothetical protein; 38.6 1.5E+02 0.0032 29.3 7.8 45 376-420 6-50 (74)
327 KOG0240 Kinesin (SMY1 subfamil 38.4 1.1E+03 0.025 31.5 22.1 23 469-491 455-477 (607)
328 PHA03011 hypothetical protein; 37.9 1.9E+02 0.0041 30.3 8.5 55 309-363 64-118 (120)
329 PF15294 Leu_zip: Leucine zipp 37.5 8.6E+02 0.019 29.9 23.3 91 707-798 128-221 (278)
330 KOG1962 B-cell receptor-associ 36.8 3.7E+02 0.0079 31.8 11.7 33 285-317 155-187 (216)
331 TIGR02449 conserved hypothetic 36.8 57 0.0012 31.7 4.5 61 1287-1354 5-65 (65)
332 KOG4460 Nuclear pore complex, 36.7 1.2E+03 0.026 31.2 19.7 125 381-505 604-737 (741)
333 PF05377 FlaC_arch: Flagella a 36.3 86 0.0019 29.6 5.4 37 324-360 1-37 (55)
334 KOG0979 Structural maintenance 36.1 1.5E+03 0.033 32.3 64.2 215 185-404 176-392 (1072)
335 PF09304 Cortex-I_coil: Cortex 36.0 5.7E+02 0.012 27.3 14.7 33 328-360 42-74 (107)
336 PF07106 TBPIP: Tat binding pr 35.9 3.6E+02 0.0079 29.8 11.3 37 563-599 74-110 (169)
337 PRK00295 hypothetical protein; 35.8 1.9E+02 0.004 28.2 7.9 43 378-420 4-46 (68)
338 PF15233 SYCE1: Synaptonemal c 35.3 6.5E+02 0.014 27.8 15.2 48 323-370 6-53 (134)
339 PF02403 Seryl_tRNA_N: Seryl-t 34.6 3.9E+02 0.0084 27.4 10.5 70 328-397 27-99 (108)
340 cd00632 Prefoldin_beta Prefold 34.5 4.5E+02 0.0098 27.1 11.0 41 320-360 60-100 (105)
341 PF05529 Bap31: B-cell recepto 33.3 2.6E+02 0.0057 31.5 9.9 29 321-349 116-144 (192)
342 COG1730 GIM5 Predicted prefold 33.1 7.1E+02 0.015 27.8 12.6 45 338-386 7-51 (145)
343 PRK00736 hypothetical protein; 32.7 2E+02 0.0044 27.9 7.6 42 379-420 5-46 (68)
344 PF08647 BRE1: BRE1 E3 ubiquit 32.0 5.8E+02 0.013 26.2 12.6 20 328-347 22-41 (96)
345 PF04880 NUDE_C: NUDE protein, 31.9 62 0.0013 36.4 4.6 45 535-583 2-46 (166)
346 PRK02119 hypothetical protein; 31.8 1.8E+02 0.0038 28.7 7.1 43 320-362 6-48 (73)
347 PF09766 FimP: Fms-interacting 31.5 1.7E+02 0.0037 36.4 8.7 126 1224-1351 3-149 (355)
348 PRK00295 hypothetical protein; 31.4 2.6E+02 0.0057 27.2 8.1 39 322-360 4-42 (68)
349 PF05546 She9_MDM33: She9 / Md 31.1 6.8E+02 0.015 29.5 12.6 51 184-234 33-83 (207)
350 PF10234 Cluap1: Clusterin-ass 31.1 1.1E+03 0.023 29.0 17.1 97 485-588 121-217 (267)
351 KOG4001 Axonemal dynein light 31.0 2.4E+02 0.0051 32.9 8.8 79 1151-1235 173-251 (259)
352 PF06705 SF-assemblin: SF-asse 31.0 9.4E+02 0.02 28.3 31.6 27 446-472 125-151 (247)
353 PRK04325 hypothetical protein; 30.9 1.9E+02 0.0041 28.6 7.1 42 319-360 5-46 (74)
354 PF04949 Transcrip_act: Transc 30.8 8.2E+02 0.018 27.6 12.6 106 606-737 52-157 (159)
355 COG1382 GimC Prefoldin, chaper 30.8 7.3E+02 0.016 27.0 12.4 38 323-360 70-107 (119)
356 PF05278 PEARLI-4: Arabidopsis 30.7 1.1E+03 0.023 28.9 16.4 37 422-458 222-258 (269)
357 PRK04406 hypothetical protein; 30.5 1.7E+02 0.0038 29.0 6.8 42 320-361 8-49 (75)
358 KOG2264 Exostosin EXT1L [Signa 30.4 2.4E+02 0.0052 37.0 9.6 40 419-458 98-137 (907)
359 PRK12705 hypothetical protein; 30.2 1.4E+03 0.031 30.2 20.3 35 462-496 135-169 (508)
360 PRK02793 phi X174 lysis protei 30.2 1.8E+02 0.0038 28.6 6.8 41 321-361 6-46 (72)
361 PF04728 LPP: Lipoprotein leuc 29.8 3E+02 0.0064 26.3 7.8 17 389-405 34-50 (56)
362 PF12072 DUF3552: Domain of un 29.8 9.1E+02 0.02 27.8 22.9 71 426-496 104-177 (201)
363 COG5509 Uncharacterized small 29.7 37 0.0008 32.4 2.0 26 1311-1336 26-51 (65)
364 PRK04406 hypothetical protein; 29.6 2.4E+02 0.0052 28.0 7.6 43 377-419 9-51 (75)
365 PF05276 SH3BP5: SH3 domain-bi 29.5 1.1E+03 0.023 28.5 29.3 66 369-434 146-211 (239)
366 PRK02793 phi X174 lysis protei 29.3 2.4E+02 0.0052 27.7 7.5 43 377-419 6-48 (72)
367 TIGR02338 gimC_beta prefoldin, 29.0 6.8E+02 0.015 26.1 11.5 38 323-360 67-104 (110)
368 KOG1937 Uncharacterized conser 29.0 1.4E+03 0.031 29.8 33.7 37 328-364 387-423 (521)
369 PF15272 BBP1_C: Spindle pole 28.8 1E+03 0.022 28.0 18.6 109 700-822 8-116 (196)
370 KOG4603 TBP-1 interacting prot 28.5 3.2E+02 0.007 31.2 9.1 44 562-624 94-137 (201)
371 KOG2391 Vacuolar sorting prote 28.3 4.4E+02 0.0096 33.0 11.0 139 65-245 149-287 (365)
372 PF08826 DMPK_coil: DMPK coile 28.2 3.6E+02 0.0078 26.1 8.2 31 1218-1248 31-61 (61)
373 TIGR02977 phageshock_pspA phag 28.1 1E+03 0.022 27.7 23.7 21 354-374 123-143 (219)
374 TIGR00618 sbcc exonuclease Sbc 27.8 2E+03 0.043 31.1 80.8 614 176-802 187-870 (1042)
375 KOG4438 Centromere-associated 27.7 1.5E+03 0.032 29.5 36.2 50 218-267 159-208 (446)
376 PF15456 Uds1: Up-regulated Du 27.6 8.2E+02 0.018 26.6 12.0 27 419-445 86-112 (124)
377 PF14988 DUF4515: Domain of un 27.2 1.1E+03 0.023 27.7 25.2 42 470-511 156-197 (206)
378 PRK00846 hypothetical protein; 27.1 3.4E+02 0.0073 27.4 8.1 42 319-360 9-50 (77)
379 PF15272 BBP1_C: Spindle pole 27.0 8.6E+02 0.019 28.5 12.4 81 1022-1106 43-127 (196)
380 PF06156 DUF972: Protein of un 26.9 2.3E+02 0.0049 30.0 7.4 45 342-386 13-57 (107)
381 PF12329 TMF_DNA_bd: TATA elem 26.7 6.4E+02 0.014 25.0 9.9 18 388-405 7-24 (74)
382 PRK02119 hypothetical protein; 26.5 3.2E+02 0.007 27.0 7.9 38 377-414 7-44 (73)
383 KOG2264 Exostosin EXT1L [Signa 26.4 2.7E+02 0.006 36.5 9.2 31 1586-1618 501-531 (907)
384 PF04728 LPP: Lipoprotein leuc 26.1 3.5E+02 0.0076 25.9 7.6 45 418-462 7-51 (56)
385 PF12761 End3: Actin cytoskele 25.8 5.2E+02 0.011 30.2 10.4 22 320-341 100-121 (195)
386 PF05377 FlaC_arch: Flagella a 25.7 1.1E+02 0.0023 29.1 4.2 45 1103-1147 3-47 (55)
387 PRK00736 hypothetical protein; 25.7 2.5E+02 0.0054 27.3 6.8 39 322-360 4-42 (68)
388 PHA03011 hypothetical protein; 25.6 2.9E+02 0.0064 29.0 7.6 60 191-250 58-117 (120)
389 PF07200 Mod_r: Modifier of ru 25.6 8.8E+02 0.019 26.2 13.2 89 701-790 45-133 (150)
390 KOG0972 Huntingtin interacting 25.3 1.4E+03 0.03 28.4 15.5 39 366-404 274-312 (384)
391 KOG4657 Uncharacterized conser 25.1 1.3E+03 0.027 27.8 14.2 97 367-470 46-145 (246)
392 PF06818 Fez1: Fez1; InterPro 25.1 1.2E+03 0.026 27.5 22.0 99 425-523 7-105 (202)
393 KOG3647 Predicted coiled-coil 25.0 6.1E+02 0.013 30.9 11.0 83 176-272 98-180 (338)
394 PF03962 Mnd1: Mnd1 family; I 24.6 1.1E+03 0.024 27.1 13.8 15 296-310 111-125 (188)
395 KOG2077 JNK/SAPK-associated pr 24.5 1.3E+03 0.028 30.9 14.4 137 657-842 296-435 (832)
396 KOG4460 Nuclear pore complex, 24.5 1.8E+03 0.04 29.6 19.2 18 237-254 607-624 (741)
397 PF06476 DUF1090: Protein of u 24.4 9E+02 0.02 25.9 11.5 86 321-452 22-113 (115)
398 PF04124 Dor1: Dor1-like famil 24.3 7E+02 0.015 30.7 12.1 91 676-767 14-108 (338)
399 PF08172 CASP_C: CASP C termin 23.9 6.2E+02 0.013 30.4 11.1 55 529-585 77-131 (248)
400 PF08581 Tup_N: Tup N-terminal 23.9 7.7E+02 0.017 25.0 12.1 67 291-360 7-73 (79)
401 PF07889 DUF1664: Protein of u 23.5 1E+03 0.022 26.1 12.9 38 377-414 80-117 (126)
402 smart00338 BRLZ basic region l 23.3 73 0.0016 29.9 2.8 38 1308-1345 24-61 (65)
403 COG1382 GimC Prefoldin, chaper 23.2 9.9E+02 0.022 26.0 12.9 39 422-460 71-109 (119)
404 TIGR01010 BexC_CtrB_KpsE polys 23.0 1.5E+03 0.032 28.0 18.1 60 195-254 168-229 (362)
405 PF04136 Sec34: Sec34-like fam 22.9 4.8E+02 0.01 29.0 9.4 74 689-762 6-85 (157)
406 PRK09343 prefoldin subunit bet 22.6 8.9E+02 0.019 25.9 10.9 102 686-789 10-114 (121)
407 PF12761 End3: Actin cytoskele 22.4 8.5E+02 0.018 28.5 11.3 22 345-366 97-118 (195)
408 PF06705 SF-assemblin: SF-asse 22.4 1.3E+03 0.029 27.1 32.0 47 422-468 176-223 (247)
409 PF14257 DUF4349: Domain of un 22.3 2.7E+02 0.0058 32.9 7.8 88 641-734 105-192 (262)
410 PF05384 DegS: Sensor protein 22.1 1.2E+03 0.026 26.5 23.2 82 345-426 28-117 (159)
411 PF05529 Bap31: B-cell recepto 22.0 6.1E+02 0.013 28.6 10.2 71 376-452 115-185 (192)
412 PF06698 DUF1192: Protein of u 21.9 60 0.0013 31.0 1.9 29 1309-1337 20-48 (59)
413 PF06156 DUF972: Protein of un 21.9 3.4E+02 0.0074 28.7 7.5 42 401-442 16-57 (107)
414 PF03962 Mnd1: Mnd1 family; I 21.8 1.1E+03 0.023 27.2 12.1 26 183-208 62-87 (188)
415 PF09325 Vps5: Vps5 C terminal 21.5 1.2E+03 0.027 26.5 23.0 172 262-467 26-202 (236)
416 KOG0163 Myosin class VI heavy 21.5 2.3E+03 0.051 29.8 22.8 41 343-383 867-914 (1259)
417 PF04880 NUDE_C: NUDE protein, 21.5 1.2E+02 0.0025 34.4 4.4 44 404-451 4-47 (166)
418 TIGR02301 conserved hypothetic 21.4 1.3E+02 0.0029 32.4 4.5 47 6-63 58-104 (121)
419 TIGR02449 conserved hypothetic 21.4 3.1E+02 0.0066 26.9 6.4 52 659-710 11-62 (65)
420 PF13094 CENP-Q: CENP-Q, a CEN 21.1 5.1E+02 0.011 28.5 9.2 45 370-414 18-62 (160)
421 PF09539 DUF2385: Protein of u 20.7 1.3E+02 0.0029 31.2 4.2 46 6-62 33-78 (96)
422 TIGR02894 DNA_bind_RsfA transc 20.4 6.9E+02 0.015 28.4 9.8 52 536-594 100-151 (161)
423 KOG1655 Protein involved in va 20.3 1.5E+03 0.031 26.8 12.6 125 591-715 21-151 (218)
424 KOG4603 TBP-1 interacting prot 20.2 7.3E+02 0.016 28.6 9.9 67 323-401 79-145 (201)
425 TIGR02338 gimC_beta prefoldin, 20.2 1E+03 0.022 24.9 12.9 16 318-333 12-27 (110)
No 1
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.95 E-value=1.5e-15 Score=200.66 Aligned_cols=880 Identities=20% Similarity=0.204 Sum_probs=465.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHH---HHhHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 045448 425 SLQVEAESLVQKIAIKDQELSQKQRELEN-LQ-ASLQDE---QSRFAQVEVTLQTLQKLHSQSQHEQKALTLELQNKLQK 499 (1756)
Q Consensus 425 ~Lq~Ele~l~eKIs~lerEL~eKqeE~e~-Lq-s~IqdE---~~K~~q~E~al~~Le~l~sqsQeE~~~La~El~~~~~~ 499 (1756)
.+....+.+..+++.++.+|..+...... +. +.|... ++++......|-=+-+-+..+|.++..+-+++.+....
T Consensus 334 sl~~~~~~~~k~~~~le~~l~~an~~~~~~~~~~~~s~~~a~~s~~~~~~~sLtk~ys~~~~~qqqle~~~lele~~~~~ 413 (1822)
T KOG4674|consen 334 SLSKLNEKLEKKVSRLEGELEDANDSLSATGESSMVSEKAALASSLIRPGSSLTKLYSKYSKLQQQLESLKLELERLQNI 413 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcccchhhhHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444555555555444443332 11 122211 34555555555556666666666666666666665555
Q ss_pred hhh-------hhhhhHhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 045448 500 MKD-------MEVCNHDLEEGIEQVKRENQSLVELNSSSTITIQNLQNEIFNLKEMKEKLEKEIALQEDKSNALQLEVRH 572 (1756)
Q Consensus 500 L~~-------lE~~k~~l~~~~~~~~ee~~~L~eln~sS~~~i~~L~~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~ 572 (1756)
|.. ...-...-...+..+..++..++.-...+---|..++.+|..++.....++.|+.+--....+|++++.+
T Consensus 414 l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv~~ 493 (1822)
T KOG4674|consen 414 LSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELESLKKQLNDLERENKLLEQQISDLSRQVNV 493 (1822)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544 3333334455666777777777777777888999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHhhCCCccc--------hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH---------HHh
Q 045448 573 LKEEIMGLSRRYQALVEQVLSVGLNPEH--------LGSAVKELQEENSKLKEVCKEQGDEKEVLHEK---------LKN 635 (1756)
Q Consensus 573 ~KeE~~~Ln~~~~~l~E~~~s~~l~~~s--------~~~~i~~Lq~en~kLkE~~~~~~~Ek~~l~ek---------l~~ 635 (1756)
+-.++..++..+-...+.....+.+... -=+.|..||.-|..|-..+..+.+..++--.. ...
T Consensus 494 Ll~el~e~~~~~~~~~~s~~~~~es~S~~iIse~Lv~F~nI~eLqekN~eLL~~vR~Lae~lE~~E~~~~~~~~~~~k~~ 573 (1822)
T KOG4674|consen 494 LLLELDELRKGSKITVSSDSTENESDSEEIISERLVEFSNINELQEKNVELLNAVRELAEKLEAAEKTQDKTLQNILKET 573 (1822)
T ss_pred HHHHHHHHHhhhhcccCccccccCccHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999998887655555554322221110 11346889999999988887777666662111 112
Q ss_pred HhHHHHHHHHHHHhHhh-------hcccccchh-----------------------------hhHHHHHHHhhHHHHHHh
Q 045448 636 MDNLLKKNAALEGSLSE-------MNIKLEGSG-----------------------------ERVNDLQKSCQFLREEKS 679 (1756)
Q Consensus 636 ~e~L~~k~~~le~sls~-------~~~ele~lr-----------------------------~~vk~Lqe~~~~Lke~~s 679 (1756)
++.++++...|+..+.. +-.+.|-++ ..+++|++.-...+
T Consensus 574 ~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~nss~~~~t~~~~~~e~~l~qLe~~le~~~---- 649 (1822)
T KOG4674|consen 574 INEASEKIAELEKELEEQEQRIESLLTERDMYKELLAELEDSHQLKPNSSALDQTEAPRAKEKRLRQLENELESYK---- 649 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCchhhcccccchhHHHHHHHHHHHHHHHH----
Confidence 22223333222222222 222222222 23333333333222
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhhhhhHHHHHHHHhHHHHHHHHHhhhhhhhhhHHHHHhhH----
Q 045448 680 SLVAEKATLLSQLQIMTENMQKLLEKNVTLEHSLAGANVELEGLRAKSKSLEDFCRMLKNEKSNLLNERSTLVSQL---- 755 (1756)
Q Consensus 680 ~~~sEK~aL~~qlq~~~~~m~kLlEkns~LE~SLSd~n~ELe~lR~K~K~lEEscq~l~~ekS~L~~Ek~~L~SQL---- 755 (1756)
.|+.+-... ..+.+++|-.....+-..|-+...++.=-+.+++.|++....++.+...|..=...|-+.+
T Consensus 650 ---~E~~~~~~~---l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~ 723 (1822)
T KOG4674|consen 650 ---KEKRENLKK---LQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQE 723 (1822)
T ss_pred ---HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222111111 1122333333333333333333333333456667777777777777776662222222222
Q ss_pred H---HHHHHHHHHHHHHhHHhHhhhhhHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHH
Q 045448 756 E---DVEKRLGNLERRFTKLEEKYADIEREKESTLSQVEELRYSLTNEQLERANYVQSSESRMVDLESLVHQLQEETTLR 832 (1756)
Q Consensus 756 ~---~~t~~l~~Le~k~t~LE~~~s~~~~Eke~~~~qv~~L~~~L~~e~e~~~~~~~s~e~~l~~le~~i~~Lqee~~~~ 832 (1756)
+ .+...|-.-..++..|+...+.+..|+..+..- ...|..+++.+....++....+.+++-....+++-....
T Consensus 724 q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t----~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~ 799 (1822)
T KOG4674|consen 724 QTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKET----EERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMAT 799 (1822)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 222333344444445555555555555444332 344555556666666666666666666666665555555
Q ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHhhhhhHHHHHHHhhhhhHHHHHHHHHHHH
Q 045448 833 KKEFEE-------ELDKAVKAQVEIFILQKFIKDLEEKNLSLLIECQKHVEASKLSDKLIAELESENLEQQVETEFLLDE 905 (1756)
Q Consensus 833 ~~e~e~-------e~~k~~~aq~ei~ilq~~l~d~eekn~sLl~ecqk~~e~~k~se~~iseLE~e~~~~q~e~~~l~~~ 905 (1756)
+..+++ ++.++-.- |+.|..|+.+.+..+-....-+..-..-....+..+=..+...+.....|..+
T Consensus 800 k~~~e~~i~eL~~el~~lk~k------lq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k 873 (1822)
T KOG4674|consen 800 KDKCESRIKELERELQKLKKK------LQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIK 873 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554443 33332221 78888888887777776666666655555566666667777777777777777
Q ss_pred HHHHHHHHHHH-HHHhccCCCCCCccccccCccchhhhHhhHHHhhhhhhchhhhHHHHHHHHHHHHHHHHHhhhhchhh
Q 045448 906 LEKLRTGIYQV-FRVLQFDPANWHEGKIEQGHIPIPQIVEDIEDLKSSVLRNEDEKQQLVIENTVLLTLIGQLRLDGAEQ 984 (1756)
Q Consensus 906 ~~~lr~gi~qv-~~~l~~~~~~~~~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~q~~~~E~svl~t~L~q~~~e~~~l 984 (1756)
+.-|-.+|..+ .+.++.+++--..|....+. .|...+.++.+++..+-.+.-...+.--..++.-+-|.+........
T Consensus 874 ~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~-~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~ 952 (1822)
T KOG4674|consen 874 LSELEKRLKSAKTQLLNLDSKSSNEDATILED-TLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDET 952 (1822)
T ss_pred HHHHHHHHHHhHHHHhhccccchhhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777763 44455554422333222222 48888899988888887777766666666666666666555554444
Q ss_pred hhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHhHHHhh---------HHHHHHHHHHhhHHH-------------------
Q 045448 985 ESGKKIFEQELMSRTEQHMMLQKDKDELLEMNKQLML---------EEAYLTLQEENSKLL------------------- 1036 (1756)
Q Consensus 985 ~~ek~~l~~e~~~~~~q~~~Lq~~~~~lle~n~ql~~---------~~s~~~lq~e~~~~~------------------- 1036 (1756)
+ ..++..++........|..+.-.|..-+..|+. +...-.+..++..+.
T Consensus 953 ~---~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~ 1029 (1822)
T KOG4674|consen 953 R---LELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIED 1029 (1822)
T ss_pred H---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 223333333333333333333333332222221 111122222222222
Q ss_pred ----------------HhhHHHHHHHhhhHHHHhhhhhhhHHHHHHHHhhccchhhhchhhhhhHHHHHHHHHhhhhhhh
Q 045448 1037 ----------------EEDRLLYERFLGLKKEISALEEENIVLLQEALDLGNVSTVFKSFGIEKAEEVKALFEDLNHLHM 1100 (1756)
Q Consensus 1037 ----------------~e~~sL~~~~~~l~e~~~~leden~~~l~E~~~~~~ls~~~~~~~~e~~~~l~~l~~~~~~l~~ 1100 (1756)
..|.+=.-...++..++..|..+|..+-.+...|.-- ....--.+.+.......
T Consensus 1030 ~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~----------~~~~~~~l~e~~~~w~E 1099 (1822)
T KOG4674|consen 1030 LQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKS----------RESRHALLSEQERDWSE 1099 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------HHHHHhHHhhcccchHH
Confidence 2222223333444445555555555555544433211 11111223333445556
Q ss_pred cchhhhHHHHHHhhhhhhHhHhhhhhhHhHHHHHHHHHhhhchhhhhh-hHHhhhchhhhhhhhhHHHH-----HHHHHH
Q 045448 1101 TNGELQGKVELLGRKLEMKEAEGLHLNETVDKLQKELHEVSDLNDQLN-IQIFIGHDSLRQKASDLLEA-----EQKLKA 1174 (1756)
Q Consensus 1101 ~~~~L~~~v~~l~~kl~~~e~e~~~l~~~~~~~~~eL~~~~s~~~~l~-~q~~~~~~~l~~k~~~lle~-----~~~~~~ 1174 (1756)
....|.++|....++..+++..|.-|..-|+.+-.-.....--.+... .++.+.-.+| ++++++++. ..-...
T Consensus 1100 ~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~L-R~Ekei~~tk~~~lk~e~~~ 1178 (1822)
T KOG4674|consen 1100 KEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFL-RKEKEIAETKLDTLKRENAR 1178 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHH-HhHHHHHhhhHHHHHHHHHH
Confidence 667789999999999999999999998888776654332111111111 1122211122 223333221 222344
Q ss_pred hhhhhHHHHHHHHHHHhhhhHHHHHH----------HHHhHHHHHHh---hhhhhhhHHHHhHHHhhHHHHHHHHHhHHH
Q 045448 1175 THNLNVELCITVEDLKRECDELKLIK----------ENAEKRILEIS---RDCSKQERELECLQEVNKSLEAEVGILHDE 1241 (1756)
Q Consensus 1175 ~~~~~~el~~~v~~l~~~~~e~~~~~----------~~~e~~i~~ls---~~~~~q~~ei~~l~e~n~~L~~e~~~l~~e 1241 (1756)
+....+.+|++|.+|+......++-- .++=+++.++. +.++.=+.+.....+-++.|+..+..|..+
T Consensus 1179 L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~qEl~~~i~kl~~e 1258 (1822)
T KOG4674|consen 1179 LKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKIQELRDKIEKLNFE 1258 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66777888888888887776655433 12222232222 444444555555555555555556666666
Q ss_pred HHHHHhhhhhhchHHHhhhhhhhhhHHHHHH----------hhhhhhHhHHHHHHHHhHHHHHHHHhhhhcccccchhhh
Q 045448 1242 IEEHRIREVYLSSELQERSNEFELWESEATS----------FYFDLQMSSTREVLLENKVHELAEVCESLEDGSATKSLE 1311 (1756)
Q Consensus 1242 ~~~~~~re~~l~~el~~~~~e~~~~e~e~~~----------~~~dlq~ssv~~~l~e~kv~El~~~c~~le~~~~~k~~~ 1311 (1756)
+..++..=..|.++++...++++..+.+.-. =|-|..... ...|...|.+|+.+-..+...
T Consensus 1259 l~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~---------~~kL~~ei~~Lk~el~~ke~~ 1329 (1822)
T KOG4674|consen 1259 LAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKND---------YEKLKSEISRLKEELEEKENL 1329 (1822)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555444444443321 122222222 234455666666666555555
Q ss_pred HHHHHHHhhhhhhhhhhhhhhcccchhHHHhhhhhHHHHH
Q 045448 1312 SKQMKERIGSLESEIGRLKSRLSSYDPVIASLKDNITSLE 1351 (1756)
Q Consensus 1312 i~~lkerv~~lE~En~~Lk~~Lsay~p~i~sL~~~v~sLE 1351 (1756)
|..++.+++-+. .-.|-+|.+..--++.|.+.|..|+
T Consensus 1330 ~~el~~~~~~~q---~~~k~qld~l~~e~~~lt~~~~ql~ 1366 (1822)
T KOG4674|consen 1330 IAELKKELNRLQ---EKIKKQLDELNNEKANLTKELEQLE 1366 (1822)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555554 3344555555555555555555553
No 2
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.92 E-value=1.4e-13 Score=185.36 Aligned_cols=698 Identities=20% Similarity=0.222 Sum_probs=375.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 321 CLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNS 400 (1756)
Q Consensus 321 ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~ 400 (1756)
|.+.++.|.+.--.++...+.+...+.-.+..+..|.+...+|+..-+.+-..+.+-.....++|.....++.+...+..
T Consensus 976 ~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e 1055 (1930)
T KOG0161|consen 976 LDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQE 1055 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444444444444444444444455555555566666666666666666666666666667777777777777766666
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHh
Q 045448 401 EILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQTLQKLHS 480 (1756)
Q Consensus 401 EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~~Le~l~s 480 (1756)
.+..+......+...+...+.++..++.+++.....++.+.+.+.+.+..+.-|...++.|+.-+..+|.+..-|...+.
T Consensus 1056 ~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele 1135 (1930)
T KOG0161|consen 1056 SIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELE 1135 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77767777777777777777799999999999999999999999999999999999999999999999999988888888
Q ss_pred hhHHHHHHHHH----HHHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 481 QSQHEQKALTL----ELQNKLQKMKDMEVCNHDLEEGIEQVKRENQSLVELNSSSTITIQNLQNEIFNLKEMKEKLEKEI 556 (1756)
Q Consensus 481 qsQeE~~~La~----El~~~~~~L~~lE~~k~~l~~~~~~~~ee~~~L~eln~sS~~~i~~L~~Ei~~lke~~~~LE~Ev 556 (1756)
.+++++.-... -++.....=.++..-+.+++.....+...+..|...+. ..+..|...+..++....+|+.
T Consensus 1136 ~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~---~~~~el~~qle~l~~~k~~lek-- 1210 (1930)
T KOG0161|consen 1136 ELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHA---DSLAELQEQLEQLQKDKAKLEK-- 1210 (1930)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH--
Confidence 88777766632 22222222334555666777777777788887875554 4677777778888887778887
Q ss_pred HHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHH-------HHHhhhhHHHH
Q 045448 557 ALQEDKSNALQLEVRHLKEEIMGLSRRYQALVEQVLSVGLNPEHLGSAVKELQEENSKLKEV-------CKEQGDEKEVL 629 (1756)
Q Consensus 557 ~~~v~~~~~LQ~Ei~~~KeE~~~Ln~~~~~l~E~~~s~~l~~~s~~~~i~~Lq~en~kLkE~-------~~~~~~Ek~~l 629 (1756)
.+..||.++..+-.++..+...-..+.--- ..+...+.+||-...++... +.+...|..-+
T Consensus 1211 -----ek~~lq~e~~~l~~ev~~~~~~k~~~e~~~-------k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l 1278 (1930)
T KOG0161|consen 1211 -----EKSDLQREIADLAAELEQLSSEKKDLEKKD-------KKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEEL 1278 (1930)
T ss_pred -----HHHHHHHHHHHHHHHHHHHhhhhccHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 666777777666666655543100000000 11122333333333333332 12222222222
Q ss_pred HHHHHh----HhHHHHHHHHHHHhHhhhcccccc-------hhhhHHHHHHHhhHHHHHHhhhhHHHHHHHHHH------
Q 045448 630 HEKLKN----MDNLLKKNAALEGSLSEMNIKLEG-------SGERVNDLQKSCQFLREEKSSLVAEKATLLSQL------ 692 (1756)
Q Consensus 630 ~ekl~~----~e~L~~k~~~le~sls~~~~ele~-------lr~~vk~Lqe~~~~Lke~~s~~~sEK~aL~~ql------ 692 (1756)
...+.+ +..+++..+.+..+|.++.-.++. +...+..++..|..|++.......-|+-|.-++
T Consensus 1279 ~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e 1358 (1930)
T KOG0161|consen 1279 SRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAE 1358 (1930)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222211 112233333333333333222221 111222222222222222222222222221111
Q ss_pred --------HHhHHH-HHHHHHHHhhHHhhhhhhhhhhHHHHHHHHhHHHHHHHHHhhhhhhhhhHHHHHhhHHHHHHHHH
Q 045448 693 --------QIMTEN-MQKLLEKNVTLEHSLAGANVELEGLRAKSKSLEDFCRMLKNEKSNLLNERSTLVSQLEDVEKRLG 763 (1756)
Q Consensus 693 --------q~~~~~-m~kLlEkns~LE~SLSd~n~ELe~lR~K~K~lEEscq~l~~ekS~L~~Ek~~L~SQL~~~t~~l~ 763 (1756)
+..... .+.+-+-.--|...++.+...++..-.+.-+||.+-+.|.++-..+..+-....+-.......+.
T Consensus 1359 ~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k 1438 (1930)
T KOG0161|consen 1359 LAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQK 1438 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111110 11222222223333334444444444444444444444444444444444444444444455666
Q ss_pred HHHHHHhHHhHhhhhhHHHHhHhHHHHHHH-----------------HHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHH
Q 045448 764 NLERRFTKLEEKYADIEREKESTLSQVEEL-----------------RYSLTNEQLERANYVQSSESRMVDLESLVHQLQ 826 (1756)
Q Consensus 764 ~Le~k~t~LE~~~s~~~~Eke~~~~qv~~L-----------------~~~L~~e~e~~~~~~~s~e~~l~~le~~i~~Lq 826 (1756)
....-.+++..++.++..|++.+....+.+ ..++..++..+.+.+.-...++++..+.++.|+
T Consensus 1439 ~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~ele 1518 (1930)
T KOG0161|consen 1439 RFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELE 1518 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666777777777777777765555443 233455555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHhhhhhHHHHHHHhhhhhHHHHHHHHHHHHH
Q 045448 827 EETTLRKKEFEEELDKAVKAQVEIFILQKFIKDLEEKNLSLLIECQKHVEASKLSDKLIAELESENLEQQVETEFLLDEL 906 (1756)
Q Consensus 827 ee~~~~~~e~e~e~~k~~~aq~ei~ilq~~l~d~eekn~sLl~ecqk~~e~~k~se~~iseLE~e~~~~q~e~~~l~~~~ 906 (1756)
...+.+..+..+=... +--+.--+..-+.+..-+-++.+ .+-++.+.... .--+.+
T Consensus 1519 k~~r~le~e~~elQ~a-------LeElE~~le~eE~~~lr~~~~~~----------~~r~e~er~l~-------ek~Ee~ 1574 (1930)
T KOG0161|consen 1519 KEKRRLEQEKEELQAA-------LEELEAALEAEEDKKLRLQLELQ----------QLRSEIERRLQ-------EKDEEI 1574 (1930)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHhhhhhhHHHHHHHHHH----------HHHHHHHHHHH-------hhhHHH
Confidence 5555444443221111 11111112222222222222211 11122222222 223455
Q ss_pred HHHHHHHHHHHHHhccCCCCCCccccccCccch-hhhHhhHHHhhhhhhchhhhHHHHHHHHHHHHHHHHHhhhhchhhh
Q 045448 907 EKLRTGIYQVFRVLQFDPANWHEGKIEQGHIPI-PQIVEDIEDLKSSVLRNEDEKQQLVIENTVLLTLIGQLRLDGAEQE 985 (1756)
Q Consensus 907 ~~lr~gi~qv~~~l~~~~~~~~~d~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~q~~~~E~svl~t~L~q~~~e~~~l~ 985 (1756)
+..|.+....+..|+-..+ .+-..+.+-+.+ .++-+.|.+|.-.++.+...+-...=.++.+-..+..|+.++.+..
T Consensus 1575 E~~rk~~~~~i~~~q~~Le--~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~ 1652 (1930)
T KOG0161|consen 1575 EELRKNLQRQLESLQAELE--AETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQ 1652 (1930)
T ss_pred HHHHHHHHHHHHHHHHhhh--HHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 6666666666666665333 222222232222 2356667777777777777776666677778888888888888888
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhhhHHHHHHhHHHhhHHHHHHHHHHhhHHHHhhHHHHHHHhhhHHHHhhhhhhhHHH
Q 045448 986 SGKKIFEQELMSRTEQHMMLQKDKDELLEMNKQLMLEEAYLTLQEENSKLLEEDRLLYERFLGLKKEISALEEENIVL 1063 (1756)
Q Consensus 986 ~ek~~l~~e~~~~~~q~~~Lq~~~~~lle~n~ql~~~~s~~~lq~e~~~~~~e~~sL~~~~~~l~e~~~~leden~~~ 1063 (1756)
..+..+...+..-...+-.|+.+..+|-.....+.. +.+.+..|.--+.+..+.+...-..+...+..||-+..++
T Consensus 1653 ~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~R--arr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l 1728 (1930)
T KOG0161|consen 1653 RAREELLEQLAEAERRLAALQAELEELREKLEALER--ARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQL 1728 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHH
Confidence 888777776766667777777777666555555433 3334444444444444444444444445555555554443
No 3
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.92 E-value=2.2e-12 Score=171.41 Aligned_cols=1093 Identities=20% Similarity=0.223 Sum_probs=557.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHHHHHHHhhhhcHH
Q 045448 181 ADSELETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLDERASKADIEVKVLKEALIRLEAERDAGLL 260 (1756)
Q Consensus 181 aEeEIdeLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~eRA~kAE~EIqsLKetLakLEsekdasll 260 (1756)
++.....+.++|..+....+.+..+...+...++.+-.++..+......+.-.+.........+..+...++.++..
T Consensus 50 ~eq~~~~~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~--- 126 (1822)
T KOG4674|consen 50 HEQQLSELEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQ--- 126 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---
Confidence 45556667777777777777777777777777777777777777766666666666666777777777777755333
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045448 261 QYNHCLERISTLEKMIIQAQEDSKGLNERASKAEIEAQKLKQELSRLENEKEAGLLQYKQCLEMIYALESKISLAEENAG 340 (1756)
Q Consensus 261 Qyqq~lErLS~LE~~Ls~AQeelk~L~ERa~kAE~Ele~LKqeL~~lEaEkEa~llQykQ~lEkIseLEkKIs~lEe~v~ 340 (1756)
..+-++....++.....+.+.+.+.+..+....-.+...+....+.--.....+..+...-+-|+....-+.....
T Consensus 127 ----l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~ 202 (1822)
T KOG4674|consen 127 ----LMELLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELS 202 (1822)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3333333333333333333344433333332222222222211111111111133333444445555555555566
Q ss_pred hHHHHHHHHHHH----HHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Q 045448 341 MLNEQTEKAETE----VKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEK----LRTS 412 (1756)
Q Consensus 341 slnqrierle~E----i~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~k----le~l 412 (1756)
.-+..+..++.+ +..|+..|..+..+...+-..|+....++..|...|.....++..++........+ +.+-
T Consensus 203 ~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q 282 (1822)
T KOG4674|consen 203 KVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAESSEEKFEKELSTQ 282 (1822)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 666665555555 66666666666666666666666666666666666666666665555444433222 1111
Q ss_pred HHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhhhHHHHH----H
Q 045448 413 EQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQTLQKLHSQSQHEQK----A 488 (1756)
Q Consensus 413 Ee~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~~Le~l~sqsQeE~~----~ 488 (1756)
..-..++.+...++..++..+...|..+..-|++. -..+.+-...+..++.+++....+.. +
T Consensus 283 ~kL~eL~ks~~ee~~~~~~el~~~i~~~~klled~--------------~~~~~e~~d~l~e~~~sl~~~~~~~~k~~~~ 348 (1822)
T KOG4674|consen 283 KKLNELWKSKLEELSHEVAELQRAIEELEKLLEDA--------------SERNKENTDQLKELEQSLSKLNEKLEKKVSR 348 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122234444444444444444444333333333 33333333344444444444443332 2
Q ss_pred HHHHHHHHHHhhhh-hh-----------hhhHhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 489 LTLELQNKLQKMKD-ME-----------VCNHDLEEGIEQVKRENQSLVELNSSSTITIQNLQNEIFNLKEMKEKLEKEI 556 (1756)
Q Consensus 489 La~El~~~~~~L~~-lE-----------~~k~~l~~~~~~~~ee~~~L~eln~sS~~~i~~L~~Ei~~lke~~~~LE~Ev 556 (1756)
|-.+|...+..+.. ++ .+....+.-+.++-.....++....+-...+..++..|++..++..-+...|
T Consensus 349 le~~l~~an~~~~~~~~~~~~s~~~a~~s~~~~~~~sLtk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~l 428 (1822)
T KOG4674|consen 349 LEGELEDANDSLSATGESSMVSEKAALASSLIRPGSSLTKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPIL 428 (1822)
T ss_pred HHHHHHhhhhhHHhhcccchhhhHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 22233333222222 11 1223333444455555555666666666677777777777666655554433
Q ss_pred H-------HhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHH-------HHh
Q 045448 557 A-------LQEDKSNALQLEVRHLKEEIMGLSRRYQALVEQVLSVGLNPEHLGSAVKELQEENSKLKEVC-------KEQ 622 (1756)
Q Consensus 557 ~-------~~v~~~~~LQ~Ei~~~KeE~~~Ln~~~~~l~E~~~s~~l~~~s~~~~i~~Lq~en~kLkE~~-------~~~ 622 (1756)
. ........+-.++.....++..+.+.++.+.-+...+-.-..-+...+.+|+.....|-..| .-.
T Consensus 429 k~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv~~Ll~el~e~~~~~~~~ 508 (1822)
T KOG4674|consen 429 KEQRSELERMQETKAELSEELDFSNQKIQKLEKELESLKKQLNDLERENKLLEQQISDLSRQVNVLLLELDELRKGSKIT 508 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 3 22334444444444444444444444444444443332222222233333333332222211 111
Q ss_pred hhhH---------HHHH---HHHHhHhHHHHHHHHHHHhHhhhcccccchhhhH-----HHHHHHhhHHHHHHhhhhHHH
Q 045448 623 GDEK---------EVLH---EKLKNMDNLLKKNAALEGSLSEMNIKLEGSGERV-----NDLQKSCQFLREEKSSLVAEK 685 (1756)
Q Consensus 623 ~~Ek---------~~l~---ekl~~~e~L~~k~~~le~sls~~~~ele~lr~~v-----k~Lqe~~~~Lke~~s~~~sEK 685 (1756)
.... ..+. ....+|..|-.+|+-|.+.|..|+..++.-.... +.+++.|..+.+.+-.+.++.
T Consensus 509 ~~s~~~~~es~S~~iIse~Lv~F~nI~eLqekN~eLL~~vR~Lae~lE~~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l 588 (1822)
T KOG4674|consen 509 VSSDSTENESDSEEIISERLVEFSNINELQEKNVELLNAVRELAEKLEAAEKTQDKTLQNILKETINEASEKIAELEKEL 588 (1822)
T ss_pred cCccccccCccHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 0122 2336778899999999999999999888655542 446666666666666555443
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhh-----------------------------HHhhhhhhhhhhHHHHHHHHhHHHHHHH
Q 045448 686 ATLLSQLQIMTENMQKLLEKNVT-----------------------------LEHSLAGANVELEGLRAKSKSLEDFCRM 736 (1756)
Q Consensus 686 ~aL~~qlq~~~~~m~kLlEkns~-----------------------------LE~SLSd~n~ELe~lR~K~K~lEEscq~ 736 (1756)
.-. .-.++-|+-.-.+ ++..|.+++.+|+..+..... .-..
T Consensus 589 ~e~-------~~~i~sLl~erd~y~e~l~~~e~~~~~k~nss~~~~t~~~~~~e~~l~qLe~~le~~~~E~~~---~~~~ 658 (1822)
T KOG4674|consen 589 EEQ-------EQRIESLLTERDMYKELLAELEDSHQLKPNSSALDQTEAPRAKEKRLRQLENELESYKKEKRE---NLKK 658 (1822)
T ss_pred HHH-------HHHHHHHHHHHHHHHHhhhcccccccCCCCchhhcccccchhHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 332 2223333333222 366677777777755444333 3344
Q ss_pred HHhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHhHHhHhhhhhHHHHhHhHHHHHHHHHHHHHHHH---HHHhhhhhhHH
Q 045448 737 LKNEKSNLLNERSTLVSQLEDVEKRLGNLERRFTKLEEKYADIEREKESTLSQVEELRYSLTNEQL---ERANYVQSSES 813 (1756)
Q Consensus 737 l~~ekS~L~~Ek~~L~SQL~~~t~~l~~Le~k~t~LE~~~s~~~~Eke~~~~qv~~L~~~L~~e~e---~~~~~~~s~e~ 813 (1756)
+..+...|..|..++=++|.........-.+++..|++..-...+|.+.+..+-..|++.|..... ...+.+.....
T Consensus 659 l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~ 738 (1822)
T KOG4674|consen 659 LQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANE 738 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 666677778888888888999998889999999999999999999999999999999999988887 67888889999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHh--------hhhhH
Q 045448 814 RMVDLESLVHQLQEETTLRKKEF---EEELDKAVKAQVEIFILQKFIKDLEEKNLSLLIECQKHVEA--------SKLSD 882 (1756)
Q Consensus 814 ~l~~le~~i~~Lqee~~~~~~e~---e~e~~k~~~aq~ei~ilq~~l~d~eekn~sLl~ecqk~~e~--------~k~se 882 (1756)
.++.++-.+..|..+...++.-. -.+..+ |.......+. ++...|-..+. ...-+
T Consensus 739 k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~-------------l~~e~~~L~~-~l~~lQt~~~~~e~s~~~~k~~~e 804 (1822)
T KOG4674|consen 739 KLEKLEAELSNLKQEKLLLKETEERLSQELEK-------------LSAEQESLQL-LLDNLQTQKNELEESEMATKDKCE 804 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999977777666543 333333 2222222111 11111211111 12222
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCccchhhhHhhHHHhhhhhhchhhhHHH
Q 045448 883 KLIAELESENLEQQVETEFLLDELEKLRTGIYQVFRVLQFDPANWHEGKIEQGHIPIPQIVEDIEDLKSSVLRNEDEKQQ 962 (1756)
Q Consensus 883 ~~iseLE~e~~~~q~e~~~l~~~~~~lr~gi~qv~~~l~~~~~~~~~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~q~ 962 (1756)
.+|-+|+.+....--+...=.+++.-|+..... .+.+.++.+....-....
T Consensus 805 ~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~-----------------------------~l~~~~~~i~~~~~~~~~ 855 (1822)
T KOG4674|consen 805 SRIKELERELQKLKKKLQEKSSDLRELTNSLEK-----------------------------QLENAQNLVDELESELKS 855 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----------------------------HHHHHHHHHHHHHHHHHH
Confidence 334444444333332222222222222221111 256667777777788888
Q ss_pred HHHHHHHHHHHHHHhhhhchhhhhhhhhhHHHHHHHHHHHhhhhhh--hH-----------HHHHH---hHHHhh-----
Q 045448 963 LVIENTVLLTLIGQLRLDGAEQESGKKIFEQELMSRTEQHMMLQKD--KD-----------ELLEM---NKQLML----- 1021 (1756)
Q Consensus 963 ~~~E~svl~t~L~q~~~e~~~l~~ek~~l~~e~~~~~~q~~~Lq~~--~~-----------~lle~---n~ql~~----- 1021 (1756)
...+++++-|-+..+...+.+| ++.++..-.++..|... +- .+-++ -.+|+.
T Consensus 856 ~~~~l~~~~~~~~~le~k~~eL-------~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i 928 (1822)
T KOG4674|consen 856 LLTSLDSVSTNIAKLEIKLSEL-------EKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQI 928 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888777766665554 44444444444444431 10 01111 111111
Q ss_pred ---HHHH----HHHHHHhhHHHHhhHHHHHHHhhhHHHHhhhhhhhHHHHHHHHhhc---------------cchhhhch
Q 045448 1022 ---EEAY----LTLQEENSKLLEEDRLLYERFLGLKKEISALEEENIVLLQEALDLG---------------NVSTVFKS 1079 (1756)
Q Consensus 1022 ---~~s~----~~lq~e~~~~~~e~~sL~~~~~~l~e~~~~leden~~~l~E~~~~~---------------~ls~~~~~ 1079 (1756)
++-| +++...++.+=+=..-+..+...+.+++..+|++.+.+-.++..+. +++-=..+
T Consensus 929 ~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~s 1008 (1822)
T KOG4674|consen 929 REYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISS 1008 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHH
Confidence 1111 2233333332222222333333444444444444444444443333 33333344
Q ss_pred hhhhhHHHHHHHHHhhhhhhhcchhhhHHHHHHhhhhhhHhHhhhhhhHhHHHHHH----------HHHhhhchhhhhhh
Q 045448 1080 FGIEKAEEVKALFEDLNHLHMTNGELQGKVELLGRKLEMKEAEGLHLNETVDKLQK----------ELHEVSDLNDQLNI 1149 (1756)
Q Consensus 1080 ~~~e~~~~l~~l~~~~~~l~~~~~~L~~~v~~l~~kl~~~e~e~~~l~~~~~~~~~----------eL~~~~s~~~~l~~ 1149 (1756)
+.+|.-.-+....+....+..+.+||...+..++.=....+.++..+......+.+ ++...+.-.+....
T Consensus 1009 l~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~ 1088 (1822)
T KOG4674|consen 1009 LQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHA 1088 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 45555555555555555666666666666555554444444443333322222211 22222222222211
Q ss_pred HHhhhchhhhhhh----hhHHHHHHHHHHhhhhhHH--------------------------HHHHHHHHHhhh------
Q 045448 1150 QIFIGHDSLRQKA----SDLLEAEQKLKATHNLNVE--------------------------LCITVEDLKREC------ 1193 (1756)
Q Consensus 1150 q~~~~~~~l~~k~----~~lle~~~~~~~~~~~~~e--------------------------l~~~v~~l~~~~------ 1193 (1756)
....+..-.+.+. .++-+...+..-|+..|.= |+++|.-|+.+.
T Consensus 1089 ~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR~Ekei~~tk 1168 (1822)
T KOG4674|consen 1089 LLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLRKEKEIAETK 1168 (1822)
T ss_pred HHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHhHHHHHhhh
Confidence 1111111111111 1122222222222222222 222222222211
Q ss_pred ---------------hHHHHHHHHHhHHHHHH------hhh-------hhhhhHHHHhHHHhhHHHHHHHHHhHHHHHHH
Q 045448 1194 ---------------DELKLIKENAEKRILEI------SRD-------CSKQERELECLQEVNKSLEAEVGILHDEIEEH 1245 (1756)
Q Consensus 1194 ---------------~e~~~~~~~~e~~i~~l------s~~-------~~~q~~ei~~l~e~n~~L~~e~~~l~~e~~~~ 1245 (1756)
.-.-....++..-++.. +.+ .+....++-.|.+.|..|+.+...+-.-++++
T Consensus 1169 ~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~qEl 1248 (1822)
T KOG4674|consen 1169 LDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKIQEL 1248 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 11111112222111111 011 12223355577899999999999988888888
Q ss_pred HhhhhhhchHHHhhhhhhhhhHHHHHHhhhhhhHhHHHHHHHHhHHHHHHHHhhhhcccccch-hhhHHHHHHHhhhhhh
Q 045448 1246 RIREVYLSSELQERSNEFELWESEATSFYFDLQMSSTREVLLENKVHELAEVCESLEDGSATK-SLESKQMKERIGSLES 1324 (1756)
Q Consensus 1246 ~~re~~l~~el~~~~~e~~~~e~e~~~~~~dlq~ssv~~~l~e~kv~El~~~c~~le~~~~~k-~~~i~~lkerv~~lE~ 1324 (1756)
+-+=+.|.-++..-.++.....+++....+++=--=--.--++-.+.+|...-++.+...+.| ..+|..|++.+..-+.
T Consensus 1249 ~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~ 1328 (1822)
T KOG4674|consen 1249 RDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKEN 1328 (1822)
T ss_pred HHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887766666666666666555554443222222234455667777766666666655 4477777777777777
Q ss_pred hhhhhhhhcccch----hHHHhhhhhHHHHHHhh
Q 045448 1325 EIGRLKSRLSSYD----PVIASLKDNITSLELNI 1354 (1756)
Q Consensus 1325 En~~Lk~~Lsay~----p~i~sL~~~v~sLE~~t 1354 (1756)
.|+.|+-.++..- --+-.|..++..|...+
T Consensus 1329 ~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~ 1362 (1822)
T KOG4674|consen 1329 LIAELKKELNRLQEKIKKQLDELNNEKANLTKEL 1362 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777666555 33344444555554433
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.90 E-value=3.6e-12 Score=172.02 Aligned_cols=147 Identities=25% Similarity=0.223 Sum_probs=70.7
Q ss_pred hHhhHHHhhhhhhchhhhHHHHHHHHHHHHHHHHHhhhhchhhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHhHHHhh
Q 045448 942 IVEDIEDLKSSVLRNEDEKQQLVIENTVLLTLIGQLRLDGAEQESGKKIFEQELMSRTEQHMMLQKDKDELLEMNKQLML 1021 (1756)
Q Consensus 942 i~~~~~~~~~~~~~~~~~~q~~~~E~svl~t~L~q~~~e~~~l~~ek~~l~~e~~~~~~q~~~Lq~~~~~lle~n~ql~~ 1021 (1756)
.-...+.+...++.++.+.++.-.+.=-+..-+.-+.-..+.+..+++.|..++.--..+...+.+-.|+|=...+.+-.
T Consensus 1447 ~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~ 1526 (1930)
T KOG0161|consen 1447 WKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQ 1526 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445555555555555555554544444555556666666666666666666666666665444333322
Q ss_pred HHHHHHHHHHhhHHHHhhHHHHHHHhhhHHHHhhhhhhhHHHHHHHHhhccchhhhchhhhhhHHHHHHHHHhhh-hhhh
Q 045448 1022 EEAYLTLQEENSKLLEEDRLLYERFLGLKKEISALEEENIVLLQEALDLGNVSTVFKSFGIEKAEEVKALFEDLN-HLHM 1100 (1756)
Q Consensus 1022 ~~s~~~lq~e~~~~~~e~~sL~~~~~~l~e~~~~leden~~~l~E~~~~~~ls~~~~~~~~e~~~~l~~l~~~~~-~l~~ 1100 (1756)
++.-|...+.++. ..|+.+-+..+.-++...-+=.=|...+.++..+....-.++. .+.+
T Consensus 1527 ----------------e~~elQ~aLeElE---~~le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~ 1587 (1930)
T KOG0161|consen 1527 ----------------EKEELQAALEELE---AALEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEELRKNLQRQLES 1587 (1930)
T ss_pred ----------------HHHHHHHHHHHHH---HHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 2222222222222 2244555555554444444444445555555555555544433 3333
Q ss_pred cchhhhH
Q 045448 1101 TNGELQG 1107 (1756)
Q Consensus 1101 ~~~~L~~ 1107 (1756)
..+.|+.
T Consensus 1588 ~q~~Le~ 1594 (1930)
T KOG0161|consen 1588 LQAELEA 1594 (1930)
T ss_pred HHHhhhH
Confidence 3334443
No 5
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=99.89 E-value=4.9e-24 Score=198.07 Aligned_cols=52 Identities=85% Similarity=1.321 Sum_probs=51.4
Q ss_pred ChHHHHHHHHHHhhchhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhh
Q 045448 1 MDAKVKAMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYD 52 (1756)
Q Consensus 1 m~~~vk~~l~li~ed~dsfa~~aemyy~~Rp~li~~vee~~r~yr~Laeryd 52 (1756)
||.+||.|||||++||||||+||||||+|||+||++||||||+||+||||||
T Consensus 23 md~kvk~mlklieedgdSfakrAEmyy~kRp~Li~~vee~yr~YrsLAerYD 74 (74)
T PF07765_consen 23 MDEKVKAMLKLIEEDGDSFAKRAEMYYKKRPELISLVEEFYRSYRSLAERYD 74 (74)
T ss_pred HHHHHHHHHHHhccCcchHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999999999999999999999999998
No 6
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.77 E-value=8.7e-09 Score=140.25 Aligned_cols=116 Identities=12% Similarity=0.136 Sum_probs=59.6
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHH
Q 045448 504 EVCNHDLEEGIEQVKRENQSLVELNSSSTITIQNLQNEIFNLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIMGLSRR 583 (1756)
Q Consensus 504 E~~k~~l~~~~~~~~ee~~~L~eln~sS~~~i~~L~~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln~~ 583 (1756)
...+..++..+..+...+..+-. +.... ..++..+..+...+..++.++..-=.+...++..+..+..++..+...
T Consensus 545 ~~k~~~~~~~~~~~~~~~~~~~~-~~~~~---~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~e 620 (1311)
T TIGR00606 545 MDKDEQIRKIKSRHSDELTSLLG-YFPNK---KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQ 620 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444554444444322 22111 334444444444444444444433334456666666667777777666
Q ss_pred HHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhhh
Q 045448 584 YQALVEQVLSVGLNPEHLGSAVKELQEENSKLKEVCKEQGD 624 (1756)
Q Consensus 584 ~~~l~E~~~s~~l~~~s~~~~i~~Lq~en~kLkE~~~~~~~ 624 (1756)
..+..+.+... -.+..+-..+..+++...+..+.......
T Consensus 621 L~~~~~~i~~~-~~~~~~~~~L~~~~~~l~~~~~~~~~~~~ 660 (1311)
T TIGR00606 621 LSSYEDKLFDV-CGSQDEESDLERLKEEIEKSSKQRAMLAG 660 (1311)
T ss_pred HHHHHHHHhcC-CCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666521 14455556777777777666654444443
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.76 E-value=5.6e-10 Score=147.97 Aligned_cols=30 Identities=23% Similarity=0.241 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 045448 601 LGSAVKELQEENSKLKEVCKEQGDEKEVLH 630 (1756)
Q Consensus 601 ~~~~i~~Lq~en~kLkE~~~~~~~Ek~~l~ 630 (1756)
+...+..++.....+...+.....+...+.
T Consensus 675 l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~ 704 (1179)
T TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAELR 704 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555554444443
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.76 E-value=1.5e-10 Score=153.83 Aligned_cols=17 Identities=18% Similarity=0.475 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q 045448 904 DELEKLRTGIYQVFRVL 920 (1756)
Q Consensus 904 ~~~~~lr~gi~qv~~~l 920 (1756)
.-...+...+..++..|
T Consensus 1022 ~~f~~~~~~f~~~~~~l 1038 (1164)
T TIGR02169 1022 EAFEAINENFNEIFAEL 1038 (1164)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444455555555555
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.74 E-value=1.4e-09 Score=144.14 Aligned_cols=54 Identities=19% Similarity=0.125 Sum_probs=28.6
Q ss_pred hHHHhHHHHHhhhhhHHHHHHHhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 045448 867 LLIECQKHVEASKLSDKLIAELESENLEQQVE-TEFLLDELEKLRTGIYQVFRVL 920 (1756)
Q Consensus 867 Ll~ecqk~~e~~k~se~~iseLE~e~~~~q~e-~~~l~~~~~~lr~gi~qv~~~l 920 (1756)
|-.+++....+.......|.++..+....-.+ .+.+..=+..|..-+..++..|
T Consensus 998 l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~~~F~~lf~~~ 1052 (1179)
T TIGR02168 998 LKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVNENFQRVFPKL 1052 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555566655555544422 4445555556666666666654
No 10
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.74 E-value=2.3e-08 Score=136.27 Aligned_cols=128 Identities=18% Similarity=0.204 Sum_probs=77.0
Q ss_pred HHHHhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHhHHhHhhhhhHHHHhHhHHHHHHHHHHHHHHHHH-------HHhh
Q 045448 735 RMLKNEKSNLLNERSTLVSQLEDVEKRLGNLERRFTKLEEKYADIEREKESTLSQVEELRYSLTNEQLE-------RANY 807 (1756)
Q Consensus 735 q~l~~ekS~L~~Ek~~L~SQL~~~t~~l~~Le~k~t~LE~~~s~~~~Eke~~~~qv~~L~~~L~~e~e~-------~~~~ 807 (1756)
.-+..+...+..+...|-..++.++.....+..+...|+.+...+..++..+..++. -+.+|..+.++ +..-
T Consensus 825 ~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~-~r~~le~~L~el~~el~~l~~~ 903 (1311)
T TIGR00606 825 QQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQ-RRQQFEEQLVELSTEVQSLIRE 903 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 335555666666666666666666777777777777776666666666555555444 33444444444 4444
Q ss_pred hhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 045448 808 VQSSESRMVDLESLVHQLQEETTLRKKEFEEELDKAVKAQVEIFILQKFIKDLEEKNLS 866 (1756)
Q Consensus 808 ~~s~e~~l~~le~~i~~Lqee~~~~~~e~e~e~~k~~~aq~ei~ilq~~l~d~eekn~s 866 (1756)
+...+..+..+...+..++.++.......+.+..+ ++-++--++.-+.++...|-.
T Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 959 (1311)
T TIGR00606 904 IKDAKEQDSPLETFLEKDQQEKEELISSKETSNKK---AQDKVNDIKEKVKNIHGYMKD 959 (1311)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555566666666666666666666655 666666777777776665543
No 11
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.72 E-value=5.9e-09 Score=138.88 Aligned_cols=111 Identities=24% Similarity=0.322 Sum_probs=62.9
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhhhhhHHHHHHHHhHHHHHHHHHhhhhh
Q 045448 664 VNDLQKSCQFLREEKSSLVAEKATLLSQLQIMTENMQKLLEKNVTLEHSLAGANVELEGLRAKSKSLEDFCRMLKNEKSN 743 (1756)
Q Consensus 664 vk~Lqe~~~~Lke~~s~~~sEK~aL~~qlq~~~~~m~kLlEkns~LE~SLSd~n~ELe~lR~K~K~lEEscq~l~~ekS~ 743 (1756)
+..+......|......+..+...+-.++..+...+..+-....-++..+..+..+++.++..+..+......+..+...
T Consensus 676 l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~ 755 (1164)
T TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIEN 755 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHhHHhH
Q 045448 744 LLNERSTLVSQLEDVEKRLGNLERRFTKLEE 774 (1756)
Q Consensus 744 L~~Ek~~L~SQL~~~t~~l~~Le~k~t~LE~ 774 (1756)
+..+...+-+++..+...+..++.....++.
T Consensus 756 ~~~el~~l~~~i~~l~~~i~~l~~el~~l~~ 786 (1164)
T TIGR02169 756 VKSELKELEARIEELEEDLHKLEEALNDLEA 786 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555666665555555555555555543
No 12
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.60 E-value=6.1e-07 Score=121.41 Aligned_cols=222 Identities=27% Similarity=0.348 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHh----HhHHHHHHHHHHHhHhhhcccccchhhhHHHHHHHhhHHHHHHhhhh
Q 045448 607 ELQEENSKLKEVCKEQGDEKEVLHEKLKN----MDNLLKKNAALEGSLSEMNIKLEGSGERVNDLQKSCQFLREEKSSLV 682 (1756)
Q Consensus 607 ~Lq~en~kLkE~~~~~~~Ek~~l~ekl~~----~e~L~~k~~~le~sls~~~~ele~lr~~vk~Lqe~~~~Lke~~s~~~ 682 (1756)
.|+.....+.........+...+...+.. +..+......+...+..+..++..+....+.++.....+...+..+.
T Consensus 671 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 750 (1163)
T COG1196 671 ELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELE 750 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555554433322 22333333444444444444444444444555555555555544444
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhhhhhHHHH-------HHHHhHHHHHHHHHhhhhhhhhhHHHHHhhH
Q 045448 683 AEKATLLSQLQIMTENMQKLLEKNVTLEHSLAGANVELEGLR-------AKSKSLEDFCRMLKNEKSNLLNERSTLVSQL 755 (1756)
Q Consensus 683 sEK~aL~~qlq~~~~~m~kLlEkns~LE~SLSd~n~ELe~lR-------~K~K~lEEscq~l~~ekS~L~~Ek~~L~SQL 755 (1756)
.+...+-. .+.++-+...-++..++.++.+++.+. .+...++.....+......+..+..++..+.
T Consensus 751 ~~~~~~~~-------~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (1163)
T COG1196 751 EELEELQE-------RLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRR 823 (1163)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433333 334444444444444444444444444 4455555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHhHHhHhhhhhHHHHhHhHHHHHHHHHH---HHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHH
Q 045448 756 EDVEKRLGNLERRFTKLEEKYADIEREKESTLSQVEELRYS---LTNEQLERANYVQSSESRMVDLESLVHQLQEETTLR 832 (1756)
Q Consensus 756 ~~~t~~l~~Le~k~t~LE~~~s~~~~Eke~~~~qv~~L~~~---L~~e~e~~~~~~~s~e~~l~~le~~i~~Lqee~~~~ 832 (1756)
+.....+..+..+...++.....+..+.+.+..+...++.. +..++..+...+...+.+..++++++..+..+....
T Consensus 824 ~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~ 903 (1163)
T COG1196 824 ERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAEL 903 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555433 334444455555555555555555555554444444
Q ss_pred HHH
Q 045448 833 KKE 835 (1756)
Q Consensus 833 ~~e 835 (1756)
+.+
T Consensus 904 ~~~ 906 (1163)
T COG1196 904 KEE 906 (1163)
T ss_pred HHH
Confidence 433
No 13
>PRK02224 chromosome segregation protein; Provisional
Probab=99.58 E-value=2.5e-08 Score=130.72 Aligned_cols=142 Identities=19% Similarity=0.179 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 318 YKQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQ 397 (1756)
Q Consensus 318 ykQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~r 397 (1756)
+....++|..++.++..+...+..++..+..++.+++.|..++..+......+.....+...++..++..+......+..
T Consensus 260 ~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l~~~~~~l~~ 339 (880)
T PRK02224 260 IEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQA 339 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666666666666666666666667766666665555566666666666667777766666666555
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 398 LNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQ 459 (1756)
Q Consensus 398 Ln~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~Iq 459 (1756)
+....+.....+..++.....+......+..++..+..++......+.....+++.+...+.
T Consensus 340 ~~~~~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~ 401 (880)
T PRK02224 340 HNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFG 401 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555555555555444444444444455555555555555555555555444444443
No 14
>PRK02224 chromosome segregation protein; Provisional
Probab=99.58 E-value=2.6e-08 Score=130.48 Aligned_cols=60 Identities=23% Similarity=0.319 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 045448 534 TIQNLQNEIFNLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIMGLSRRYQALVEQVLS 593 (1756)
Q Consensus 534 ~i~~L~~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln~~~~~l~E~~~s 593 (1756)
.+......+..+.+....|+.++.........+..+...+.+++..+.++...+..+...
T Consensus 531 ~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 590 (880)
T PRK02224 531 TIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIES 590 (880)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444544444444444444444444444444444443333333333
No 15
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.55 E-value=7.5e-08 Score=123.72 Aligned_cols=174 Identities=19% Similarity=0.234 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 379 DKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASL 458 (1756)
Q Consensus 379 ekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~I 458 (1756)
.+|+.||..+..++.++.+|+..+.............+..-.+.--.+...++.+...++....+|..++.++..+....
T Consensus 238 ~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~ 317 (775)
T PF10174_consen 238 TKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQD 317 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 35677777777777777777766655554433333322222223333444577777777777777777777777776666
Q ss_pred HHHHHhHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHhhhcccHHHHHHH
Q 045448 459 QDEQSRFAQVEVTLQTLQKLHSQSQHEQKALTLELQNKLQKMKDMEVCNHDLEEGIEQVKRENQSLVELNSSSTITIQNL 538 (1756)
Q Consensus 459 qdE~~K~~q~E~al~~Le~l~sqsQeE~~~La~El~~~~~~L~~lE~~k~~l~~~~~~~~ee~~~L~eln~sS~~~i~~L 538 (1756)
.+=...+--.-..+...+.-+..+|-+++.|-.+|..++..++.-......++........++.-|.+.+.-...-|..|
T Consensus 318 ~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~L 397 (775)
T PF10174_consen 318 SDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVL 397 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555555556677788888889999999999999999999999888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHH
Q 045448 539 QNEIFNLKEMKEKL 552 (1756)
Q Consensus 539 ~~Ei~~lke~~~~L 552 (1756)
+..|.+|.+.+..=
T Consensus 398 q~kie~Lee~l~ek 411 (775)
T PF10174_consen 398 QKKIENLEEQLREK 411 (775)
T ss_pred HHHHHHHHHHHHHH
Confidence 88887777766543
No 16
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.54 E-value=1.9e-06 Score=116.71 Aligned_cols=242 Identities=23% Similarity=0.288 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 318 YKQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQ 397 (1756)
Q Consensus 318 ykQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~r 397 (1756)
|.....++..+...+..++..+..+...+..+..++..++..+..+..+-..+--.+.+....|..++.++..+......
T Consensus 234 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~ 313 (1163)
T COG1196 234 LKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEE 313 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444443333333333333455555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhHH-------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHh
Q 045448 398 LNSEILMGAEKLRTSEQQCVLLERANHSL-------QVEAESLVQKIAIKDQELSQ----KQRELENLQASLQDEQSRFA 466 (1756)
Q Consensus 398 Ln~EiE~l~~kle~lEe~~~~Le~ele~L-------q~Ele~l~eKIs~lerEL~e----KqeE~e~Lqs~IqdE~~K~~ 466 (1756)
+..........+..++.....+...+... ......+...+...+..+.. ....+..+...+..-.....
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (1163)
T COG1196 314 LENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELA 393 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 55554444444444444333222222222 22222222222222222221 11122222222222233333
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Q 045448 467 QVEVTLQTLQKLHSQSQHEQKALTLELQNKLQKMKDMEVCNHDLEEGIEQVKRENQSLVELNSSSTITIQNLQNEIFNLK 546 (1756)
Q Consensus 467 q~E~al~~Le~l~sqsQeE~~~La~El~~~~~~L~~lE~~k~~l~~~~~~~~ee~~~L~eln~sS~~~i~~L~~Ei~~lk 546 (1756)
.+...+..+......+..++..+...+.....++.++......++..+.....++..|.+........+..+..++..+.
T Consensus 394 ~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 473 (1163)
T COG1196 394 EIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQ 473 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555666655555555566655555555555666666666665555555555555555555555
Q ss_pred HHHHHHHHHHHHh
Q 045448 547 EMKEKLEKEIALQ 559 (1756)
Q Consensus 547 e~~~~LE~Ev~~~ 559 (1756)
..+..+..++...
T Consensus 474 ~~~~~~~~~l~~~ 486 (1163)
T COG1196 474 EELQRLEKELSSL 486 (1163)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555544443
No 17
>PRK03918 chromosome segregation protein; Provisional
Probab=99.51 E-value=5.1e-07 Score=118.36 Aligned_cols=109 Identities=20% Similarity=0.250 Sum_probs=60.3
Q ss_pred hhhhHHHHHHHHhHHHHHHHHHhhhhhhhhhHHHHHhhHHHHH-----HHHHHHHHHHhHHhHhhhhhHHHHhHhHHHHH
Q 045448 717 NVELEGLRAKSKSLEDFCRMLKNEKSNLLNERSTLVSQLEDVE-----KRLGNLERRFTKLEEKYADIEREKESTLSQVE 791 (1756)
Q Consensus 717 n~ELe~lR~K~K~lEEscq~l~~ekS~L~~Ek~~L~SQL~~~t-----~~l~~Le~k~t~LE~~~s~~~~Eke~~~~qv~ 791 (1756)
-.+++.++.++..++.-+..+..+.+.|..+...|=.+++.+. ..+..++.++..++..+..+..+++.+..++.
T Consensus 611 ~~~l~~~~~~l~~~~~~l~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~ 690 (880)
T PRK03918 611 EKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRRE 690 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555555555555555555555554 66666666667777777777766666666666
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHH
Q 045448 792 ELRYSLTNEQLERANYVQSSESRMVDLESLVHQLQ 826 (1756)
Q Consensus 792 ~L~~~L~~e~e~~~~~~~s~e~~l~~le~~i~~Lq 826 (1756)
.+...+..-... ...+.....++..++..+..++
T Consensus 691 ~l~~~i~~~~~~-~~~l~~~~~~~~~l~~~~~~l~ 724 (880)
T PRK03918 691 EIKKTLEKLKEE-LEEREKAKKELEKLEKALERVE 724 (880)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 665555433222 2223333334444444444443
No 18
>PRK03918 chromosome segregation protein; Provisional
Probab=99.46 E-value=2.1e-06 Score=112.82 Aligned_cols=41 Identities=29% Similarity=0.435 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhHHhhhhhhhhhhHHHHHHHHhHHHHHHHH
Q 045448 697 ENMQKLLEKNVTLEHSLAGANVELEGLRAKSKSLEDFCRML 737 (1756)
Q Consensus 697 ~~m~kLlEkns~LE~SLSd~n~ELe~lR~K~K~lEEscq~l 737 (1756)
..++.+-.+-.-++..+..++.+++.+...++.++.....+
T Consensus 659 ~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~ 699 (880)
T PRK03918 659 EEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKL 699 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555555555555555555544
No 19
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.39 E-value=8.8e-06 Score=105.24 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Q 045448 400 SEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQTLQKLH 479 (1756)
Q Consensus 400 ~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~~Le~l~ 479 (1756)
..++.+...+......+..+-+.+..+......+.+.|..+.-.|..++.+...|++.++.=..++-.++..|--.+...
T Consensus 287 ~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~ 366 (775)
T PF10174_consen 287 SKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQI 366 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444556666777777778888889999999999999999999998999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHH
Q 045448 480 SQSQHEQKALTLELQNKLQKMKDMEVCNHDLEEG 513 (1756)
Q Consensus 480 sqsQeE~~~La~El~~~~~~L~~lE~~k~~l~~~ 513 (1756)
..+|+|..++..||......+.-.+.-...|+..
T Consensus 367 ~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~k 400 (775)
T PF10174_consen 367 EKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKK 400 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887766555444444333334333
No 20
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=99.27 E-value=1.3e-05 Score=104.44 Aligned_cols=79 Identities=14% Similarity=0.090 Sum_probs=48.2
Q ss_pred chhhhHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHhhHH--hhhh-hhhhhhHHHHHHHHhHHHHHH
Q 045448 659 GSGERVNDLQKSCQFLREEKSSLVAEKATLLSQLQIMTENMQKLLEKNVTLE--HSLA-GANVELEGLRAKSKSLEDFCR 735 (1756)
Q Consensus 659 ~lr~~vk~Lqe~~~~Lke~~s~~~sEK~aL~~qlq~~~~~m~kLlEkns~LE--~SLS-d~n~ELe~lR~K~K~lEEscq 735 (1756)
|=-..++.+...|..|...|-....|+.-++.+. +....+-.++..++.-. .-+| .++.|-+-.-.-+++|.+-.+
T Consensus 918 ~k~~t~ac~~e~~~~l~q~~~i~~~E~e~~~~~~-~k~~~~~~~~~~~~i~~~d~efs~~~~~e~~v~~aa~~kl~eif~ 996 (1317)
T KOG0612|consen 918 CKDCTLACLEETNRTLTQKCKLLSEEKERLLGKH-KKVQEEGVVLKDEEIVLRDAEFSKKLVTERDVKHAAVNKLAEIFN 996 (1317)
T ss_pred HHHHhHHHHHHHHHHhhhhcCCchhhhhhhhhhh-hhccchhhhhhhhhHhhccHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 3334567889999999999999999998888772 33333444444332222 1111 245556666666777776655
Q ss_pred HHH
Q 045448 736 MLK 738 (1756)
Q Consensus 736 ~l~ 738 (1756)
...
T Consensus 997 r~~ 999 (1317)
T KOG0612|consen 997 RKT 999 (1317)
T ss_pred HHh
Confidence 544
No 21
>PRK01156 chromosome segregation protein; Provisional
Probab=99.24 E-value=8.6e-05 Score=98.43 Aligned_cols=21 Identities=10% Similarity=-0.053 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 045448 321 CLEMIYALESKISLAEENAGM 341 (1756)
Q Consensus 321 ~lEkIseLEkKIs~lEe~v~s 341 (1756)
+...+..+...+..++..+..
T Consensus 303 ~~~~l~~l~~~l~~l~~~l~~ 323 (895)
T PRK01156 303 YKNDIENKKQILSNIDAEINK 323 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444433333333
No 22
>PRK01156 chromosome segregation protein; Provisional
Probab=99.19 E-value=0.00014 Score=96.39 Aligned_cols=44 Identities=11% Similarity=0.121 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhh
Q 045448 321 CLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLN 364 (1756)
Q Consensus 321 ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~Le 364 (1756)
....+..+..++..+......+...+..+..+...++..+..++
T Consensus 195 ~e~eL~~~~~~i~el~~~~~~l~~~i~~~~~el~~~~~~l~~l~ 238 (895)
T PRK01156 195 SNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLK 238 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444
No 23
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.14 E-value=1e-11 Score=161.59 Aligned_cols=481 Identities=22% Similarity=0.254 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHhhhcccH
Q 045448 453 NLQASLQDEQSRFAQVEVTLQTLQKLHSQSQHEQKALTLELQNKLQKMKDMEVCNHDLEEGIEQVKRENQSLVELNSSST 532 (1756)
Q Consensus 453 ~Lqs~IqdE~~K~~q~E~al~~Le~l~sqsQeE~~~La~El~~~~~~L~~lE~~k~~l~~~~~~~~ee~~~L~eln~sS~ 532 (1756)
.|...|.+=...+-.+...+..|++....++.|+..+..++.........|+.....|...+...+.....+..-...++
T Consensus 325 kL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q 404 (859)
T PF01576_consen 325 KLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQ 404 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455556666777777777777777777777776666666666666666666666666666665666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCCCccchHHHHHHHHHHH
Q 045448 533 ITIQNLQNEIFNLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIMGLSRRYQALVEQVLSVGLNPEHLGSAVKELQEEN 612 (1756)
Q Consensus 533 ~~i~~L~~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln~~~~~l~E~~~s~~l~~~s~~~~i~~Lq~en 612 (1756)
...+.+..+|..++..+..+...+..--..+..|+.+|..+. .+....|-++..+....+.|..+.
T Consensus 405 ~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~--------------~q~~~~~k~v~eLek~kr~LE~e~ 470 (859)
T PF01576_consen 405 REARELETELFKLKNELEELQEQLEELERENKQLQDELEDLT--------------SQLDDAGKSVHELEKAKRRLEQEK 470 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccch--------------hhhhhhccchHHHHHHHHHHHHHH
Confidence 777777777777777666555433222223333333333333 333334444444455555555555
Q ss_pred HHHHHHHHHhhhhHHH----------------------HHHHHHhHhHHHHHHHHHHHhHhhhcccccch-------hhh
Q 045448 613 SKLKEVCKEQGDEKEV----------------------LHEKLKNMDNLLKKNAALEGSLSEMNIKLEGS-------GER 663 (1756)
Q Consensus 613 ~kLkE~~~~~~~Ek~~----------------------l~ekl~~~e~L~~k~~~le~sls~~~~ele~l-------r~~ 663 (1756)
..|+..+.-.++.... |.++-.+|+.+...|+ ..|..+...+|.= .--
T Consensus 471 ~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~q---r~l~~le~~LE~E~k~r~~~~r~ 547 (859)
T PF01576_consen 471 EELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQ---RQLESLEAELEEERKERAEALRE 547 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhH---HHHHHHHhHHHHHHHHHHHHHHH
Confidence 4444444433333222 2233334444433332 2333333333321 111
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHH--------------HHHHHHHhHHHHHHHHHHHhhHHhhhhhhhhhhHHHHHHHHh
Q 045448 664 VNDLQKSCQFLREEKSSLVAEKAT--------------LLSQLQIMTENMQKLLEKNVTLEHSLAGANVELEGLRAKSKS 729 (1756)
Q Consensus 664 vk~Lqe~~~~Lke~~s~~~sEK~a--------------L~~qlq~~~~~m~kLlEkns~LE~SLSd~n~ELe~lR~K~K~ 729 (1756)
.|+|+.....|.......+--++. |--.+.......+.+.+....+|.-+..+.+||+.+|..+..
T Consensus 548 kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~ 627 (859)
T PF01576_consen 548 KKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQ 627 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 133333322221111111100111 111122222223345556667777777788888888887777
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHhHHhHhhhhhHHHHhHhHHHHHH-------HHHHHHHHHH
Q 045448 730 LEDFCRMLKNEKSNLLNERSTLVSQLEDVEKRLGNLERRFTKLEEKYADIEREKESTLSQVEE-------LRYSLTNEQL 802 (1756)
Q Consensus 730 lEEscq~l~~ekS~L~~Ek~~L~SQL~~~t~~l~~Le~k~t~LE~~~s~~~~Eke~~~~qv~~-------L~~~L~~e~e 802 (1756)
++-.+..+-.+...+..+-+.|-++-.+....-..|+.+.+.|+..+-....+.+.+-.+.+. |...|..++.
T Consensus 628 a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~ 707 (859)
T PF01576_consen 628 AERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQD 707 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 777777777777777666666666666666666667777777776666666666665444433 3444444443
Q ss_pred HHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHhhhhhH
Q 045448 803 ERANYVQSSESRMVDLESLVHQLQEETTLRKKEFEEELDKAVKAQVEIFILQKFIKDLEEKNLSLLIECQKHVEASKLSD 882 (1756)
Q Consensus 803 ~~~~~~~s~e~~l~~le~~i~~Lqee~~~~~~e~e~e~~k~~~aq~ei~ilq~~l~d~eekn~sLl~ecqk~~e~~k~se 882 (1756)
. ..-.+..=..||.+|..|+-+... ++...+. .-..+....+
T Consensus 708 ~----~~~le~~k~~LE~q~keLq~rl~e----------------------------~E~~~~~------~~k~~i~kLE 749 (859)
T PF01576_consen 708 H----NQHLEKEKKALERQVKELQARLEE----------------------------AEQSALK------GGKKQIAKLE 749 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHhhhc------ccccHHHHHh
Confidence 2 222222333334444433333222 2221111 0011344567
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCccchhhhHhhHHHhhhhhhchhhhHHH
Q 045448 883 KLIAELESENLEQQVETEFLLDELEKLRTGIYQVFRVLQFDPANWHEGKIEQGHIPIPQIVEDIEDLKSSVLRNEDEKQQ 962 (1756)
Q Consensus 883 ~~iseLE~e~~~~q~e~~~l~~~~~~lr~gi~qv~~~l~~~~~~~~~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~q~ 962 (1756)
.+|.+||+++-..+-+.....-.+.++..-|..+ +++++.+....+.+.+ .+...-..|..++..+.+++.+.+
T Consensus 750 ~ri~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl--~~q~ee~~k~~~~~~d---~~~kl~~k~k~~krq~eeaEe~~~- 823 (859)
T PF01576_consen 750 ARIRELEEELESEQRRRAEAQKQLRKLERRVKEL--QFQVEEERKNAERLQD---LVDKLQLKLKQLKRQLEEAEEEAS- 823 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--HHHHHhHHHHHHHHHH---HHHHHHHHHHHHHhhhhhHHHHHH-
Confidence 7889999998888888888888888888888777 5677777666553322 233444456666777777776544
Q ss_pred HHHHHHHHHHHHHHhhhhchhhhhhhhhhHHHHHHHHH
Q 045448 963 LVIENTVLLTLIGQLRLDGAEQESGKKIFEQELMSRTE 1000 (1756)
Q Consensus 963 ~~~E~svl~t~L~q~~~e~~~l~~ek~~l~~e~~~~~~ 1000 (1756)
...+--.++..++.+..-...+++-++.....
T Consensus 824 ------~~~~k~Rk~q~elee~~e~~~~~e~~l~~lr~ 855 (859)
T PF01576_consen 824 ------RNLAKYRKLQRELEEAEERAEAAERELNKLRA 855 (859)
T ss_dssp -------------SSSSHHHHHTCCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666777777776666666666655543
No 24
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.06 E-value=0.00038 Score=91.21 Aligned_cols=108 Identities=18% Similarity=0.238 Sum_probs=68.5
Q ss_pred HHHHHhHhHHHHHHHHHHHhHhhhcccccchhhhHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHhhH
Q 045448 630 HEKLKNMDNLLKKNAALEGSLSEMNIKLEGSGERVNDLQKSCQFLREEKSSLVAEKATLLSQLQIMTENMQKLLEKNVTL 709 (1756)
Q Consensus 630 ~ekl~~~e~L~~k~~~le~sls~~~~ele~lr~~vk~Lqe~~~~Lke~~s~~~sEK~aL~~qlq~~~~~m~kLlEkns~L 709 (1756)
..+...+++++++...+..-+..+++-..-....+..+|...+.|...|.....|.++|..++......+.++=..-.=-
T Consensus 903 q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~ 982 (1293)
T KOG0996|consen 903 QAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEA 982 (1293)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33444555666666666666666666666667777788888888888888888888888888877666666644443444
Q ss_pred HhhhhhhhhhhHHHHHHHHhHHHHHHHH
Q 045448 710 EHSLAGANVELEGLRAKSKSLEDFCRML 737 (1756)
Q Consensus 710 E~SLSd~n~ELe~lR~K~K~lEEscq~l 737 (1756)
+++|-+++.++..++..+...+.+-..|
T Consensus 983 ~~~~~E~k~~~~~~k~~~e~i~k~~~~l 1010 (1293)
T KOG0996|consen 983 EESLKEIKKELRDLKSELENIKKSENEL 1010 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555544444444444333
No 25
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.94 E-value=0.0006 Score=88.16 Aligned_cols=362 Identities=20% Similarity=0.222 Sum_probs=242.9
Q ss_pred HHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhhhHHHHHHHH
Q 045448 411 TSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQTLQKLHSQSQHEQKALT 490 (1756)
Q Consensus 411 ~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~~Le~l~sqsQeE~~~La 490 (1756)
.++-.|+.|++.+-.|+.+++.--+.+..+..+|+.+..|+++|+..+.+ ++...+...--..|++.|.
T Consensus 174 hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e-----------~l~ea~ra~~yrdeldalr 242 (1195)
T KOG4643|consen 174 HLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEE-----------FLDEAHRADRYRDELDALR 242 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhhhhhhHHHHHH
Confidence 44445777777888888888888888888888888888888888887777 4445555555555665555
Q ss_pred H--------------HHHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 491 L--------------ELQNKLQKMKDMEVCNHDLEEGIEQVKRENQSLVELNSSSTITIQNLQNEIFNLKEMKEKLEKEI 556 (1756)
Q Consensus 491 ~--------------El~~~~~~L~~lE~~k~~l~~~~~~~~ee~~~L~eln~sS~~~i~~L~~Ei~~lke~~~~LE~Ev 556 (1756)
. ++.--.-.+.+|+--|..|...+.-+++.++.|.-.+.- -.+..+|..+++.+-.|+.
T Consensus 243 e~aer~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~-----~tleseiiqlkqkl~dm~~-- 315 (1195)
T KOG4643|consen 243 EQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG-----ATLESEIIQLKQKLDDMRS-- 315 (1195)
T ss_pred HhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc-----CChHHHHHHHHHHHHHHHH--
Confidence 2 332222335556666777777777778888777766521 3456677788888888876
Q ss_pred HHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHH------HHHHhhhhHHHHH
Q 045448 557 ALQEDKSNALQLEVRHLKEEIMGLSRRYQALVEQVLSVGLNPEHLGSAVKELQEENSKLKE------VCKEQGDEKEVLH 630 (1756)
Q Consensus 557 ~~~v~~~~~LQ~Ei~~~KeE~~~Ln~~~~~l~E~~~s~~l~~~s~~~~i~~Lq~en~kLkE------~~~~~~~Ek~~l~ 630 (1756)
++-+.|.-+..+-+||+.|.-...+|.-++...++..+.-...=..++-++..|+- ..+.++--..+-.
T Consensus 316 -----erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~tlee 390 (1195)
T KOG4643|consen 316 -----ERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTSDRALKLLLENRRLTGTLEE 390 (1195)
T ss_pred -----hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHH
Confidence 77788888888899998888877777777776665221111111223333333333 2222211111111
Q ss_pred HHHHhHhHHHHHHHHHHHhHhhhcccccchhhhHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHhhHH
Q 045448 631 EKLKNMDNLLKKNAALEGSLSEMNIKLEGSGERVNDLQKSCQFLREEKSSLVAEKATLLSQLQIMTENMQKLLEKNVTLE 710 (1756)
Q Consensus 631 ekl~~~e~L~~k~~~le~sls~~~~ele~lr~~vk~Lqe~~~~Lke~~s~~~sEK~aL~~qlq~~~~~m~kLlEkns~LE 710 (1756)
-+-.+.+.+-.++..|++.=..+-.+.+-+.+.+..+--....|.+.-..+.-|++.|.......+..|+.=.-+|-.+-
T Consensus 391 lqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~ 470 (1195)
T KOG4643|consen 391 LQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELD 470 (1195)
T ss_pred HhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHH
Confidence 11123444444555555555555555555555555555555566666666666666666666555555554444444444
Q ss_pred hhh---hhhhhhhHHHHHHHHhHHHHHHHHHhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHhHHhHhhhhhHHHHhHhH
Q 045448 711 HSL---AGANVELEGLRAKSKSLEDFCRMLKNEKSNLLNERSTLVSQLEDVEKRLGNLERRFTKLEEKYADIEREKESTL 787 (1756)
Q Consensus 711 ~SL---Sd~n~ELe~lR~K~K~lEEscq~l~~ekS~L~~Ek~~L~SQL~~~t~~l~~Le~k~t~LE~~~s~~~~Eke~~~ 787 (1756)
.-+ .-+-.+.+.++.+.|.+=.+.+-=.-+-|.|.+.+.-|.-|++..-..+..+-++.-+|+..+.-+..|...++
T Consensus 471 q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~Ll 550 (1195)
T KOG4643|consen 471 QLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLL 550 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 433 34567888999999998888888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 045448 788 SQVEELRY 795 (1756)
Q Consensus 788 ~qv~~L~~ 795 (1756)
.|+-.|+-
T Consensus 551 kqI~~Lk~ 558 (1195)
T KOG4643|consen 551 KQIQSLKT 558 (1195)
T ss_pred HHHHHHHH
Confidence 99988865
No 26
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.94 E-value=0.0011 Score=87.21 Aligned_cols=253 Identities=19% Similarity=0.250 Sum_probs=183.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHH
Q 045448 307 LENEKEAGLLQYKQCLEMIYALESKISLAEENA-GMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQME 385 (1756)
Q Consensus 307 lEaEkEa~llQykQ~lEkIseLEkKIs~lEe~v-~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE 385 (1756)
++.+.-.+-..+......++.+++.|..++... ..++.+...++.+...|++++..+++.-..|-..++.|.+++...+
T Consensus 356 ~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ 435 (1074)
T KOG0250|consen 356 LKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEE 435 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 333333333446666678888889999998888 8888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------------------
Q 045448 386 SEIFNAQEHAKQLNSEILMGAEKLRTSEQQ-------------------------------------------------- 415 (1756)
Q Consensus 386 ~ELseaeeev~rLn~EiE~l~~kle~lEe~-------------------------------------------------- 415 (1756)
.+..+.+..+..+...++.-...++.++..
T Consensus 436 ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG~~m~~lL~~I~r~~~~f~~~P~GPlG~~Vtl~~~KWa~aIE 515 (1074)
T KOG0250|consen 436 EEKEHIEGEILQLRKKIENISEELKDLKKTKTDKVSAFGPNMPQLLRAIERRKRRFQTPPKGPLGKYVTLKEPKWALAIE 515 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHhcCCCCCCCCccceeEecCcHHHHHHH
Confidence 999999888888888888777776655542
Q ss_pred -Hh-----------------------------------------------------------------------------
Q 045448 416 -CV----------------------------------------------------------------------------- 417 (1756)
Q Consensus 416 -~~----------------------------------------------------------------------------- 417 (1756)
|.
T Consensus 516 ~~L~n~lnaFiv~sh~D~~~Lr~i~~~~~~~~~~ptIvvs~~~~~~y~~~~~p~~~~pTil~~le~ddp~V~N~LID~s~ 595 (1074)
T KOG0250|consen 516 RCLGNLLNAFIVTSHKDARILRAIMRRLKIPGNRPTIVVSSFTPFDYSVGRNPGYEFPTILDALEFDDPEVLNVLIDKSG 595 (1074)
T ss_pred HHHHHhhhhheeCCHhhHHHHHHHHHHcCCCCCCCcEEEecCCccccccccCCCCCCCceeeeeecCChHHHHHhhhhcc
Confidence 00
Q ss_pred --------------------------------------------------------------HHHHhhhHHHHHHHHHHH
Q 045448 418 --------------------------------------------------------------LLERANHSLQVEAESLVQ 435 (1756)
Q Consensus 418 --------------------------------------------------------------~Le~ele~Lq~Ele~l~e 435 (1756)
-+...++.++.++..+..
T Consensus 596 iE~~lLiEdk~Ea~~~m~s~~~p~n~~~aytldg~~~~~~g~~~~~ySt~~~~~r~~~~~~~s~d~~ie~le~e~~~l~~ 675 (1074)
T KOG0250|consen 596 IEQVLLIEDKKEAREFMQSDKPPANVTKAYTLDGRQIFAGGPNYRVYSTRGTRARRPGVDEFSFDDEIEDLEREASRLQK 675 (1074)
T ss_pred ceeEEEecchHHHHHHHhcCCCCccceeeeccCccccccCCCCcceeccCCCCCCCccccchhHhHHHHHHHHHHHHHHH
Confidence 035556666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhhhH----------HHHHHHHHHHHHHHHhhhhhhh
Q 045448 436 KIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQTLQKLHSQSQ----------HEQKALTLELQNKLQKMKDMEV 505 (1756)
Q Consensus 436 KIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~~Le~l~sqsQ----------eE~~~La~El~~~~~~L~~lE~ 505 (1756)
+|..+.....+....++.+...+..=...+.+.+.......---.+++ ..++.|+.+|....+++...+.
T Consensus 676 ~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~ei~~~~~eIe~~~~ 755 (1074)
T KOG0250|consen 676 EILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLAREIKKKEKEIEEKEA 755 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHH
Confidence 666666555555555555555555444444444443332222222222 2467788888888888888888
Q ss_pred hhHhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045448 506 CNHDLEEGIEQVKRENQSLVELNSSSTITIQNLQNEIFNLKEMKEKLEKEIALQ 559 (1756)
Q Consensus 506 ~k~~l~~~~~~~~ee~~~L~eln~sS~~~i~~L~~Ei~~lke~~~~LE~Ev~~~ 559 (1756)
-..++++.+..+..+.+.+.+...+-...++...+.+..+++.+..-+.++...
T Consensus 756 ~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~s~ 809 (1074)
T KOG0250|consen 756 PLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKLRSA 809 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh
Confidence 899999999999998888988888888888888888888877777666655543
No 27
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.90 E-value=2.3e-10 Score=149.21 Aligned_cols=101 Identities=18% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 382 AQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDE 461 (1756)
Q Consensus 382 seLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE 461 (1756)
...+.....++..+..++..++.....+..+......|..++..|...++....++..+.+........++-++..+++|
T Consensus 176 ~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeE 255 (859)
T PF01576_consen 176 QEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEE 255 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhH
Confidence 33444444445555555555555555555555555666667777777777777777777777777777777777777777
Q ss_pred HHhHhhHHHHHHHHHHHHhhh
Q 045448 462 QSRFAQVEVTLQTLQKLHSQS 482 (1756)
Q Consensus 462 ~~K~~q~E~al~~Le~l~sqs 482 (1756)
..........+..++.-+..+
T Consensus 256 tr~k~~L~~~l~~le~e~~~L 276 (859)
T PF01576_consen 256 TRAKQALEKQLRQLEHELEQL 276 (859)
T ss_dssp ---------------------
T ss_pred hhhhhhhHHHHHHHHHHHHHH
Confidence 766655555555555443333
No 28
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=98.86 E-value=0.0016 Score=84.17 Aligned_cols=523 Identities=21% Similarity=0.234 Sum_probs=284.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 319 KQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQL 398 (1756)
Q Consensus 319 kQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rL 398 (1756)
+++..+-..+..+|..++..++-....+.+...|.+.|.+....+..+.+.+-.+. .++
T Consensus 23 ~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~---------------------~~l 81 (717)
T PF09730_consen 23 QESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELER---------------------KRL 81 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHH
Confidence 55555666666777777777777777777777777777777644444433333332 223
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-----HHH
Q 045448 399 NSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQ---KIAIKDQELSQKQRELENLQASLQDEQSRFAQ-----VEV 470 (1756)
Q Consensus 399 n~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~e---KIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q-----~E~ 470 (1756)
+.++-........+=+.++.||++|..||..+-.+++ ....+..++....+|.+.|++.+++ +.+++. -|.
T Consensus 82 r~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee-~~rLk~iae~qleE 160 (717)
T PF09730_consen 82 REEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEE-AARLKEIAEKQLEE 160 (717)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3333322222222333345555566666666666554 3344556666777777788888775 444443 566
Q ss_pred HHHHHHHHHhh---hHHHHHH-HHHH----HHHHHHhhhhhhh---------hhHh---HHHHHHHH---H---H-----
Q 045448 471 TLQTLQKLHSQ---SQHEQKA-LTLE----LQNKLQKMKDMEV---------CNHD---LEEGIEQV---K---R----- 519 (1756)
Q Consensus 471 al~~Le~l~sq---sQeE~~~-La~E----l~~~~~~L~~lE~---------~k~~---l~~~~~~~---~---e----- 519 (1756)
|+.+|+.---| +.-|+.. +..+ +......|..+-. .+.| ....+... . -
T Consensus 161 ALesl~~EReqk~~LrkEL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 240 (717)
T PF09730_consen 161 ALESLKSEREQKNALRKELDQHLNIESISYLSNLAISLDGLKFSEDPRAATEPNNDDEEENGGLNGGPGLAKGNGDNRMS 240 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccccccchhhcccccccccccccccCCCCchhhhcchhhccchhcccccccccC
Confidence 66666554332 2222222 0000 0001111111100 0000 00000000 0 0
Q ss_pred -----H---------HHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHH
Q 045448 520 -----E---------NQSLVELNSSSTITIQNLQNEIFNLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIMGLSRRYQ 585 (1756)
Q Consensus 520 -----e---------~~~L~eln~sS~~~i~~L~~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln~~~~ 585 (1756)
+ -.-|.++|+ .||.+|++++.-+|.|=.--+...+.+|..+.+-+.+.+....+..
T Consensus 241 ~~~~~~~~~p~~~lv~DLfSEl~~----------~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~ 310 (717)
T PF09730_consen 241 TPRKSESFSPAPSLVSDLFSELNL----------SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKIN 310 (717)
T ss_pred CCCCCCCCCCCCcccchhhhhcch----------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 022444444 4777888888888887776677888888888888888888887777
Q ss_pred HHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHhHhHHHHHHHHHHHhHhhhcccccchhhhH
Q 045448 586 ALVEQVLSVGLNPEHLGSAVKELQEENSKLKEVCKEQGDEKEVLHEK-LKNMDNLLKKNAALEGSLSEMNIKLEGSGERV 664 (1756)
Q Consensus 586 ~l~E~~~s~~l~~~s~~~~i~~Lq~en~kLkE~~~~~~~Ek~~l~ek-l~~~e~L~~k~~~le~sls~~~~ele~lr~~v 664 (1756)
.|.+++.++.- ++.. .+.+......++...... .-.++. +...+-|.-+|......+..+..+++.++.+.
T Consensus 311 ~L~e~l~aL~~----l~~~-ke~~~~~d~~~~~~s~~d---~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~ 382 (717)
T PF09730_consen 311 RLTEQLDALRK----LQED-KEQQSAEDSEKERDSHED---GDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKY 382 (717)
T ss_pred HHHHHHHHHhh----hccc-hhhhhhhhcccccccccc---cchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888776642 1111 111111111111110000 111211 23345566788888888888877777777777
Q ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHhhHHh-------hhhhhhhhhHHHHHHHHhHHHHHHHH
Q 045448 665 NDLQKSCQFLREEKSSLVAEKATLLSQLQIMTENMQKLLEKNVTLEH-------SLAGANVELEGLRAKSKSLEDFCRML 737 (1756)
Q Consensus 665 k~Lqe~~~~Lke~~s~~~sEK~aL~~qlq~~~~~m~kLlEkns~LE~-------SLSd~n~ELe~lR~K~K~lEEscq~l 737 (1756)
..++.. ...+++.+-..+|.+ .++-..++. -+.++..+|-.++.-+.+...++.+-
T Consensus 383 ~~~~~~----------~~~ek~~~~~e~q~L-------~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsA 445 (717)
T PF09730_consen 383 NELEER----------YKQEKDRLESEVQNL-------KEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSA 445 (717)
T ss_pred HHHHHH----------HHHHHHHHHHHHHHH-------HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 777662 233444444444433 333334444 56677777777777777777777777
Q ss_pred HhhhhhhhhhHHHHHhhHHHHH----------------------------------------------------------
Q 045448 738 KNEKSNLLNERSTLVSQLEDVE---------------------------------------------------------- 759 (1756)
Q Consensus 738 ~~ekS~L~~Ek~~L~SQL~~~t---------------------------------------------------------- 759 (1756)
+++-..+..+-+.|-.++....
T Consensus 446 QDELvtfSEeLAqLYHHVC~cNgeTPnRVmLD~yr~~r~~~~~~~~~e~~~~~s~~~~~~~~~~~e~~~~~~~~~~~s~~ 525 (717)
T PF09730_consen 446 QDELVTFSEELAQLYHHVCMCNGETPNRVMLDYYRQGRQTRRESSSVEERGLSSPILTDRGASSREMITSESGESSPSPS 525 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCccHHHHHHHhhhhhhccCCCcccccccCcccccccccccccccCCCCCCCCCCC
Confidence 7777777777777766665432
Q ss_pred --------------------------HHHHHHH---HHHhHHhHh-------hhhhHHHHhHhHHHHHHHHHHHHHHHHH
Q 045448 760 --------------------------KRLGNLE---RRFTKLEEK-------YADIEREKESTLSQVEELRYSLTNEQLE 803 (1756)
Q Consensus 760 --------------------------~~l~~Le---~k~t~LE~~-------~s~~~~Eke~~~~qv~~L~~~L~~e~e~ 803 (1756)
.-++-|. ++-..+-.. -.....+++.+..++-.|++.|..+||.
T Consensus 526 ~s~~~S~~~D~r~ep~~i~nl~~~irdQikhL~~av~~t~e~srq~~~~~~~~~~~d~d~e~l~eqilKLKSLLSTKREQ 605 (717)
T PF09730_consen 526 SSCPGSPVSDSRKEPMNIYNLVAIIRDQIKHLQRAVDRTTELSRQRVASRSSASEADKDKEELQEQILKLKSLLSTKREQ 605 (717)
T ss_pred CCCCCCccchhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcccccHHHhHHHHHHHHHHHHHHHHH
Confidence 1111111 111111000 0112467777777888888888888888
Q ss_pred HHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhhHHHhHHHHH
Q 045448 804 RANYVQSSESRMVDLESLVHQLQEETTLRKKEFEEELDKAVKAQVEIFILQKFIKDLEE-------KNLSLLIECQKHVE 876 (1756)
Q Consensus 804 ~~~~~~s~e~~l~~le~~i~~Lqee~~~~~~e~e~e~~k~~~aq~ei~ilq~~l~d~ee-------kn~sLl~ecqk~~e 876 (1756)
.+..---..+-=.--|.-++.|..+|.+=+...-+...| |.+=|.-+.+ ...-+.+-|..|+.
T Consensus 606 IaTLRTVLKANKqTAEvALanLKsKYE~EK~~v~etm~k----------LRnELK~LKEDAATFsSlRamFa~RCdEYvt 675 (717)
T PF09730_consen 606 IATLRTVLKANKQTAEVALANLKSKYENEKAMVSETMMK----------LRNELKALKEDAATFSSLRAMFAARCDEYVT 675 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554322222222244566777777777766666666555 3333433333 66777788988874
Q ss_pred hhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 877 ASKLSDKLIAELESENLEQQVETEFLLDELEKLRTGIYQVFR 918 (1756)
Q Consensus 877 ~~k~se~~iseLE~e~~~~q~e~~~l~~~~~~lr~gi~qv~~ 918 (1756)
- +.+|.-...--..|.+.| |.=||++|.|=+.
T Consensus 676 Q-------ldemqrqL~aAEdEKKTL---NsLLRmAIQQKLa 707 (717)
T PF09730_consen 676 Q-------LDEMQRQLAAAEDEKKTL---NSLLRMAIQQKLA 707 (717)
T ss_pred H-------HHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHH
Confidence 2 344444444445555555 5678999998654
No 29
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.84 E-value=0.0015 Score=82.43 Aligned_cols=140 Identities=17% Similarity=0.199 Sum_probs=97.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHH
Q 045448 473 QTLQKLHSQSQHEQKALTLELQNKLQKMKDMEVCNHDLEEGIEQVKRENQSLVELNSSSTITIQNLQNEIFNLKEMKEKL 552 (1756)
Q Consensus 473 ~~Le~l~sqsQeE~~~La~El~~~~~~L~~lE~~k~~l~~~~~~~~ee~~~L~eln~sS~~~i~~L~~Ei~~lke~~~~L 552 (1756)
..+.........|+...-..|+.-...+..|+.....|+..+..++.++..|.+.-..+...+.+|..++...+..+..+
T Consensus 277 ~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~ 356 (522)
T PF05701_consen 277 SELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAA 356 (522)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHH
Confidence 34444566666777777777777788888899999999999999999999998888888889999999999888888777
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCCCccchHHHHHHHHHHH
Q 045448 553 EKEIALQEDKSNALQLEVRHLKEEIMGLSRRYQALVEQVLSVGLNPEHLGSAVKELQEEN 612 (1756)
Q Consensus 553 E~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln~~~~~l~E~~~s~~l~~~s~~~~i~~Lq~en 612 (1756)
..+....-.....|...++.+..|.......-..+.+++..+.--.+.....|...+...
T Consensus 357 ~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL 416 (522)
T PF05701_consen 357 KAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERL 416 (522)
T ss_pred HhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665554434445566666666666666665555555555555444444444444444443
No 30
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.82 E-value=0.0026 Score=83.83 Aligned_cols=564 Identities=20% Similarity=0.237 Sum_probs=285.1
Q ss_pred HHHhhHHHHHHHHHHhhhcHHHHHhhHHHHHHHHH----HHHHHHHHhhhhcHHHHHhHHHHHHHHHHHHHHHHhhhhhH
Q 045448 211 QKFSSLERELNHAQKDAGGLDERASKADIEVKVLK----EALIRLEAERDAGLLQYNHCLERISTLEKMIIQAQEDSKGL 286 (1756)
Q Consensus 211 eKLsElEkEIse~QKel~EL~eRA~kAE~EIqsLK----etLakLEsekdasllQyqq~lErLS~LE~~Ls~AQeelk~L 286 (1756)
.-+..+.+++........+...+...++.+...+. .++.+|..+.+....+-.-+.-.+.....++...+.....+
T Consensus 267 ~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~al~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~ 346 (1293)
T KOG0996|consen 267 EPIEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEALEFLKKENELFRKKNKLCQYILYESRAKIAEMQEELEKI 346 (1293)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666666666667777777777664 56666766655554444444444444344443333333322
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 045448 287 NERASKAEIEAQKLKQELS-RLENEKEAGLL-------QYKQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQ 358 (1756)
Q Consensus 287 ~ERa~kAE~Ele~LKqeL~-~lEaEkEa~ll-------QykQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~Lkq 358 (1756)
.+-....-..+.....+.. ..++-+..... ....+..+..+++.+-...++....+++.+.+++.+++..+.
T Consensus 347 ~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~ 426 (1293)
T KOG0996|consen 347 EEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARR 426 (1293)
T ss_pred HhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2211111111110111100 11111111111 122333444444444444444444444444444444444444
Q ss_pred HHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHH
Q 045448 359 ALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIA 438 (1756)
Q Consensus 359 EL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs 438 (1756)
++..++.-=+..-...++|...|..|+..+...+..+......+ ..+- .-+-.++..++.++.....++.
T Consensus 427 ~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l---~~~t-------~~~~~e~~~~ekel~~~~~~~n 496 (1293)
T KOG0996|consen 427 KKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSL---KQET-------EGIREEIEKLEKELMPLLKQVN 496 (1293)
T ss_pred hHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhh-------hhhHHHHHHHHHHHHHHHHHHH
Confidence 44333322222222333333333333333333222222221111 1111 1223356666666667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhh-----------hhh
Q 045448 439 IKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQTLQKLHSQSQHEQKALTLELQNKLQKMKDME-----------VCN 507 (1756)
Q Consensus 439 ~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~~Le~l~sqsQeE~~~La~El~~~~~~L~~lE-----------~~k 507 (1756)
....++.-.+.|++.|.+....+..++.++..++..+.+.+..-+-++..+.-+|.....++.+.+ +-+
T Consensus 497 ~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~ 576 (1293)
T KOG0996|consen 497 EARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLK 576 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777655555444444322 222
Q ss_pred HhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHH--------------------------------------------
Q 045448 508 HDLEEGIEQVKRENQSLVELNSSSTITIQNLQNEIF-------------------------------------------- 543 (1756)
Q Consensus 508 ~~l~~~~~~~~ee~~~L~eln~sS~~~i~~L~~Ei~-------------------------------------------- 543 (1756)
..+....+++.+.-.+++..-+ .-..+..|+..-.
T Consensus 577 ~~~~~~rqrveE~ks~~~~~~s-~~kVl~al~r~kesG~i~Gf~GRLGDLg~Id~kYDvAIsTac~~LdyiVVdt~e~aq 655 (1293)
T KOG0996|consen 577 SQLNKLRQRVEEAKSSLSSSRS-RNKVLDALMRLKESGRIPGFYGRLGDLGAIDEKYDVAISTACARLDYIVVDTIETAQ 655 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHcCCCCccccccccccccchHHHHHHHHhccccceEEeccHHHHH
Confidence 2333344444443333433322 1223444442211
Q ss_pred --------------------------------------------------------------------------------
Q 045448 544 -------------------------------------------------------------------------------- 543 (1756)
Q Consensus 544 -------------------------------------------------------------------------------- 543 (1756)
T Consensus 656 ~cI~fl~~~nLgraTFi~LDki~~~~~~l~~i~tpenvPRLfDLv~~~d~~~r~aFYfaLrdtLV~d~LeQAtRiaygk~ 735 (1293)
T KOG0996|consen 656 ECINFLKKNNLGRATFIILDKIKDHQKKLAPITTPENVPRLFDLVKCKDEKFRPAFYFALRDTLVADNLEQATRIAYGKD 735 (1293)
T ss_pred HHHHHHHHcCCCceeEEehHhhhhhhhccCCCCCCCCcchHhhhhccCCHHHHHHHHHHHhhhhhhcCHHHHHHHhhcCC
Confidence
Q ss_pred ---------------------------------------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHH
Q 045448 544 ---------------------------------------NLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIMGLSRRY 584 (1756)
Q Consensus 544 ---------------------------------------~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln~~~ 584 (1756)
...+-..+++..++.+......++..++.+-+....+..+-
T Consensus 736 rr~RVvTL~G~lIe~SGtmtGGG~~v~~g~mg~~~~~t~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~ 815 (1293)
T KOG0996|consen 736 RRWRVVTLDGSLIEKSGTMTGGGKKVKGGRMGTSIRVTGVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERI 815 (1293)
T ss_pred CceEEEEecceeecccccccCCCCcCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 12446788999999999999999888888888877777766
Q ss_pred HHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHhHHHHHHHHH------HHhHhhhccccc
Q 045448 585 QALVEQVLSVGLNPEHLGSAVKELQEENSKLKEVCKEQGDEKEVLHEKLKNMDNLLKKNAAL------EGSLSEMNIKLE 658 (1756)
Q Consensus 585 ~~l~E~~~s~~l~~~s~~~~i~~Lq~en~kLkE~~~~~~~Ek~~l~ekl~~~e~L~~k~~~l------e~sls~~~~ele 658 (1756)
..|.-.+..++.....+...+.-|..-+-.++....+....+..+.++-..++.+-.++..+ +..+..+-..++
T Consensus 816 ~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~ 895 (1293)
T KOG0996|consen 816 PELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAKKARIKELQNKID 895 (1293)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 66655566665555555555555555555555555555566666665555566665555555 244444444444
Q ss_pred chh-hhHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhhhhhHHHHHHHHhHHHHHHHH
Q 045448 659 GSG-ERVNDLQKSCQFLREEKSSLVAEKATLLSQLQIMTENMQKLLEKNVTLEHSLAGANVELEGLRAKSKSLEDFCRML 737 (1756)
Q Consensus 659 ~lr-~~vk~Lqe~~~~Lke~~s~~~sEK~aL~~qlq~~~~~m~kLlEkns~LE~SLSd~n~ELe~lR~K~K~lEEscq~l 737 (1756)
+++ ++|+.=.+.-.++...+..+.++-+.+-..+++...+..++=.+.+-||.-.-++..|++.|-+.++++++-.--+
T Consensus 896 ~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~ 975 (1293)
T KOG0996|consen 896 EIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAEL 975 (1293)
T ss_pred HhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 433 3444444445555555555666666666666666666666655555555544444444444444444333221111
Q ss_pred Hh-------hhhhhhhhHHHHHhhHHHHHHHHHHHHHHHhHHhHhhhhhHHHHhH
Q 045448 738 KN-------EKSNLLNERSTLVSQLEDVEKRLGNLERRFTKLEEKYADIEREKES 785 (1756)
Q Consensus 738 ~~-------ekS~L~~Ek~~L~SQL~~~t~~l~~Le~k~t~LE~~~s~~~~Eke~ 785 (1756)
.. -.-.+..+-..+++.++.++..+..|-..-=+++.++-..+.+..-
T Consensus 976 ~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId~~~K~e~~~~~l~e 1030 (1293)
T KOG0996|consen 976 EKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERIDIENKLEAINGELNE 1030 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 11 1112223335566666666666666655333355555555554443
No 31
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.75 E-value=0.0059 Score=84.02 Aligned_cols=510 Identities=21% Similarity=0.237 Sum_probs=233.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhh----hhcHHHHHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 045448 231 DERASKADIEVKVLKEALIRLEAER----DAGLLQYNHCLERISTLEKMIIQAQEDSKGLNERASKAEIEAQKLKQELSR 306 (1756)
Q Consensus 231 ~eRA~kAE~EIqsLKetLakLEsek----dasllQyqq~lErLS~LE~~Ls~AQeelk~L~ERa~kAE~Ele~LKqeL~~ 306 (1756)
..+...+..++..++..|..++.++ +..+.++..-..++..+...+..++.....|......++..+..++++|..
T Consensus 312 ~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~ 391 (1201)
T PF12128_consen 312 NKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEE 391 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555666666666665443 223445555555666666666666666666766677777777666666652
Q ss_pred -HHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHH
Q 045448 307 -LENEKEAGLLQYKQCL----EMIYALESKISLAEENAG-MLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDK 380 (1756)
Q Consensus 307 -lEaEkEa~llQykQ~l----EkIseLEkKIs~lEe~v~-slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lek 380 (1756)
+....+....+...+. +......+.+..++.... ....+...+..+...+..++..+...- .-........+.
T Consensus 392 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~e~~~~ 470 (1201)
T PF12128_consen 392 AFNRQQERLQAQQDEIREEKAERREQIEEEYQALEQELRQQSQEQLEELQEQREQLKSELAELKQQL-KNPQYTEEEKEQ 470 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcCCCHHHHHH
Confidence 3322222222111111 112222222333322222 111222233333333333333332211 111122344555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 381 IAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQD 460 (1756)
Q Consensus 381 IseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~Iqd 460 (1756)
+..++..+..+++...........+..+...++.........+..+..++..+.+.+..+...|+... ++|..-+..
T Consensus 471 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~---gSL~~fL~~ 547 (1201)
T PF12128_consen 471 LEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQK---GSLLEFLRK 547 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC---CcHHHHHHh
Confidence 56666666667777666666666666666666665555555566666666666666666655553111 111111111
Q ss_pred HHHhHhhH--------------------HH-----------HHHHHHHH-Hh----hhHHHHHHHHHHHHHHHHhhhhhh
Q 045448 461 EQSRFAQV--------------------EV-----------TLQTLQKL-HS----QSQHEQKALTLELQNKLQKMKDME 504 (1756)
Q Consensus 461 E~~K~~q~--------------------E~-----------al~~Le~l-~s----qsQeE~~~La~El~~~~~~L~~lE 504 (1756)
++--+.+. +. .+..++.- +. +++.++..+...|........+++
T Consensus 548 ~~p~We~tIGKVid~eLL~r~dL~P~l~~~~~~dslyGl~LdL~~I~~pd~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e 627 (1201)
T PF12128_consen 548 NKPGWEQTIGKVIDEELLYRTDLEPQLVEDSGSDSLYGLSLDLSAIDVPDYAASEEELRERLEQAEDQLQSAEERQEELE 627 (1201)
T ss_pred CCCcHHHHhHhhCCHHHhcCCCCCCeecCCCcccccceeEeehhhcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111000 00 01111111 22 333444445555555555566666
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhHHHHHHHHHHHHHHhhhhHH
Q 045448 505 VCNHDLEEGIEQVKRENQSLVELNSSSTITIQNLQNEIFNLKEMKEKL-EKEIALQEDKSNALQLEVRHLKEEIMGLSRR 583 (1756)
Q Consensus 505 ~~k~~l~~~~~~~~ee~~~L~eln~sS~~~i~~L~~Ei~~lke~~~~L-E~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln~~ 583 (1756)
......+..+.....+.....-...+....++.+.++...++...... +......-...+.+..++..++.++..+...
T Consensus 628 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~ 707 (1201)
T PF12128_consen 628 KQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLKQELEELLEE 707 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666665544444444455555555555544433322 2211112223333333333333333333221
Q ss_pred HHHHHHHHHhhCCC-ccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHhHHHHHHHHHHHhHhhhcccccchhh
Q 045448 584 YQALVEQVLSVGLN-PEHLGSAVKELQEENSKLKEVCKEQGDEKEVLHEKLKNMDNLLKKNAALEGSLSEMNIKLEGSGE 662 (1756)
Q Consensus 584 ~~~l~E~~~s~~l~-~~s~~~~i~~Lq~en~kLkE~~~~~~~Ek~~l~ekl~~~e~L~~k~~~le~sls~~~~ele~lr~ 662 (1756)
+ .+....+... -...+.....+...+..++..++....+ +...+. .+ -..+...|.+-|+||..+..
T Consensus 708 ~---~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~---~~~~~~---~l---e~~~~~eL~~~GvD~~~I~~ 775 (1201)
T PF12128_consen 708 L---KEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQE---AKEQLK---EL---EQQYNQELAGKGVDPERIQQ 775 (1201)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH---HH---HHHHHHHHHhCCCCHHHHHH
Confidence 1 0000000000 0000111111111111122111111111 111111 11 23455788889999865543
Q ss_pred hHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhhhhhHHHHHHHHhHHHHHHHHHhhhh
Q 045448 663 RVNDLQKSCQFLREEKSSLVAEKATLLSQLQIMTENMQKLLEKNVTLEHSLAGANVELEGLRAKSKSLEDFCRMLKNEKS 742 (1756)
Q Consensus 663 ~vk~Lqe~~~~Lke~~s~~~sEK~aL~~qlq~~~~~m~kLlEkns~LE~SLSd~n~ELe~lR~K~K~lEEscq~l~~ekS 742 (1756)
--..+..-...|+ ..+..|.+|..-+..++..-....
T Consensus 776 l~~~i~~L~~~l~-------------------------------------------~ie~~r~~V~eY~~~~~~~~~~~~ 812 (1201)
T PF12128_consen 776 LKQEIEQLEKELK-------------------------------------------RIEERRAEVIEYEDWLQEEWDKVD 812 (1201)
T ss_pred HHHHHHHHHHHHH-------------------------------------------HHHHhHHHHHHHHHHHHHHHHhhh
Confidence 2222221111111 345667777777777776666666
Q ss_pred hhhhhHHHHHhhHHHHHHHHHHHHHHHhHHhHhhhhhHHHHhHhHHHHHHHHHHHHH
Q 045448 743 NLLNERSTLVSQLEDVEKRLGNLERRFTKLEEKYADIEREKESTLSQVEELRYSLTN 799 (1756)
Q Consensus 743 ~L~~Ek~~L~SQL~~~t~~l~~Le~k~t~LE~~~s~~~~Eke~~~~qv~~L~~~L~~ 799 (1756)
.+..++..|..++..++..+..|..++..+...+..-..+.+.....+......+..
T Consensus 813 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~ 869 (1201)
T PF12128_consen 813 ELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEE 869 (1201)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777777777777776666666666655555555555555444443
No 32
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.74 E-value=0.00028 Score=88.20 Aligned_cols=116 Identities=26% Similarity=0.361 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhHhHHHHHHHHHHHhHhhhcccccchhhhHHHHHHHhhHHHHHHhhhhHHHHH
Q 045448 608 LQEENSKLKEVCKEQGDEKEVLHEKLKNMDNLLKKNAALEGSLSEMNIKLEGSGERVNDLQKSCQFLREEKSSLVAEKAT 687 (1756)
Q Consensus 608 Lq~en~kLkE~~~~~~~Ek~~l~ekl~~~e~L~~k~~~le~sls~~~~ele~lr~~vk~Lqe~~~~Lke~~s~~~sEK~a 687 (1756)
|-+....|++.-.+...|+.+|..-.. .-+..|-+|+..-..+.+-...-+.|+..
T Consensus 341 Lad~~l~lke~~~q~~qEk~~l~~~~e------------------------~~k~~ie~L~~el~~~e~~lqEer~E~qk 396 (546)
T PF07888_consen 341 LADASLELKEGRSQWAQEKQALQHSAE------------------------ADKDEIEKLSRELQMLEEHLQEERMERQK 396 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666665543221 23344455555555555555555667777
Q ss_pred HHHHHHHhHHHHHHHHHHHhhHHhhhhhhh-hhhHHHHHHHHhHHHHHHHHHhhhhhhhhhHHHHHhhHHHHHHHHHHH
Q 045448 688 LLSQLQIMTENMQKLLEKNVTLEHSLAGAN-VELEGLRAKSKSLEDFCRMLKNEKSNLLNERSTLVSQLEDVEKRLGNL 765 (1756)
Q Consensus 688 L~~qlq~~~~~m~kLlEkns~LE~SLSd~n-~ELe~lR~K~K~lEEscq~l~~ekS~L~~Ek~~L~SQL~~~t~~l~~L 765 (1756)
|-.+|- ...|.| .-|-+.|..+..+.-+.+.++-||--|..||--|+--+.....+|+++
T Consensus 397 L~~ql~------------------ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 397 LEKQLG------------------KEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHH------------------HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 766661 223444 355666666777777888899999999999999988877777777765
No 33
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.70 E-value=0.00057 Score=85.47 Aligned_cols=82 Identities=22% Similarity=0.264 Sum_probs=53.1
Q ss_pred hhhhhhhhhHhHHHHHHHHHHHHHH----HHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 045448 499 KMKDMEVCNHDLEEGIEQVKRENQS----LVELNSSSTITIQNLQNEIFNLKEMKEKLEKEIALQEDKSNALQLEVRHLK 574 (1756)
Q Consensus 499 ~L~~lE~~k~~l~~~~~~~~ee~~~----L~eln~sS~~~i~~L~~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~K 574 (1756)
++.+|....+.+.+.+++-..+.+. |+..+.++...+.....+|.-++..++.+.. ++.-|+.|.+.++
T Consensus 372 ~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qk-------EKEql~~EkQeL~ 444 (546)
T PF07888_consen 372 EIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQK-------EKEQLQEEKQELL 444 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 3444444444444444444444433 4556677777889999999999998888887 5666666666667
Q ss_pred HHHhhhhHHHHHH
Q 045448 575 EEIMGLSRRYQAL 587 (1756)
Q Consensus 575 eE~~~Ln~~~~~l 587 (1756)
+.+..|..+....
T Consensus 445 ~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 445 EYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHHh
Confidence 7766666654433
No 34
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=0.0045 Score=79.53 Aligned_cols=220 Identities=22% Similarity=0.304 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHH---HHHHHHHHHhhhhHHHHHHHHHHHhhCCCccchHHHHHHHHHH
Q 045448 537 NLQNEIFNLKEMKEKLEKEIALQED--KSNALQL---EVRHLKEEIMGLSRRYQALVEQVLSVGLNPEHLGSAVKELQEE 611 (1756)
Q Consensus 537 ~L~~Ei~~lke~~~~LE~Ev~~~v~--~~~~LQ~---Ei~~~KeE~~~Ln~~~~~l~E~~~s~~l~~~s~~~~i~~Lq~e 611 (1756)
....|+..+.+.+.++..+--.-+. -...... +...++++++.+.+-|.++.-++.+.| +.+.+.|..
T Consensus 397 ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~g-------sA~ed~Qeq 469 (698)
T KOG0978|consen 397 KARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIG-------SAFEDMQEQ 469 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 4667777777766666442221111 1112222 555668888888888888888887775 577889999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHH----HhHhHHHHHHHHHHHhHhhhcccccchhhhHHHHHHHhhHHHHHHhhhhHHHHH
Q 045448 612 NSKLKEVCKEQGDEKEVLHEKL----KNMDNLLKKNAALEGSLSEMNIKLEGSGERVNDLQKSCQFLREEKSSLVAEKAT 687 (1756)
Q Consensus 612 n~kLkE~~~~~~~Ek~~l~ekl----~~~e~L~~k~~~le~sls~~~~ele~lr~~vk~Lqe~~~~Lke~~s~~~sEK~a 687 (1756)
|.+|-....+..+..=.+.-.. +...-|.++++.|...+..++.--+-+--.++.|++.-..|....+.+..|.-.
T Consensus 470 n~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~ 549 (698)
T KOG0978|consen 470 NQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTT 549 (698)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHH
Confidence 9999888887777655543222 233356788999999999999888888888888988888888888887766555
Q ss_pred HHHHHHHhHHHHHHHHHHHhhHHhhhhhhhhhhHHHHHHHHhHHHHHHHHHhhhhhhhhhHHHHHhhHHHHHHHHHHHHH
Q 045448 688 LLSQLQIMTENMQKLLEKNVTLEHSLAGANVELEGLRAKSKSLEDFCRMLKNEKSNLLNERSTLVSQLEDVEKRLGNLER 767 (1756)
Q Consensus 688 L~~qlq~~~~~m~kLlEkns~LE~SLSd~n~ELe~lR~K~K~lEEscq~l~~ekS~L~~Ek~~L~SQL~~~t~~l~~Le~ 767 (1756)
+.-.+ +-.--+-.-+..++.++.++++..-.++..+++.|.-+.. -|++.+.+...|++
T Consensus 550 ~~~~l-------e~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~--------------ele~~~~k~~rleE 608 (698)
T KOG0978|consen 550 LTQSL-------EMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELEL--------------ELEIEKFKRKRLEE 608 (698)
T ss_pred HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHH
Confidence 54444 4445556667889999999999999999999999876643 35677788888888
Q ss_pred HHhHHhHhhhhhHHHHh
Q 045448 768 RFTKLEEKYADIEREKE 784 (1756)
Q Consensus 768 k~t~LE~~~s~~~~Eke 784 (1756)
.++.|-.+++.++.+-.
T Consensus 609 E~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 609 ELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHhccccc
Confidence 88888888888765544
No 35
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.65 E-value=0.012 Score=81.90 Aligned_cols=117 Identities=18% Similarity=0.215 Sum_probs=65.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 045448 418 LLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQTLQKLHSQSQHEQKALTLELQNKL 497 (1756)
Q Consensus 418 ~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~~Le~l~sqsQeE~~~La~El~~~~ 497 (1756)
.++..++.+........+....+.+++.+....+..|...--. +.++-.++.-|....-...+-...+..-++.-.
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~ap~----W~~a~~al~~L~eq~g~~~~~~~~v~~~mq~~~ 637 (1486)
T PRK04863 562 ELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPA----WLAAQDALARLREQSGEEFEDSQDVTEYMQQLL 637 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH----HHhhHHHHHHHHHhcchhhcCHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555443222 555555554444333333444444444444555
Q ss_pred HhhhhhhhhhHhHHHHHHHHHHHHHHHHhhhcccHHHHHHH
Q 045448 498 QKMKDMEVCNHDLEEGIEQVKRENQSLVELNSSSTITIQNL 538 (1756)
Q Consensus 498 ~~L~~lE~~k~~l~~~~~~~~ee~~~L~eln~sS~~~i~~L 538 (1756)
.....+...+.....++..+...+..|...+-.....+.++
T Consensus 638 ~~~~~~~~~~~~~~~~~~~L~~~i~~l~~~~~g~~~~l~~~ 678 (1486)
T PRK04863 638 ERERELTVERDELAARKQALDEEIERLSQPGGSEDPRLNAL 678 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccHHHHHH
Confidence 55566666666777777777777777777666665555554
No 36
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.62 E-value=0.0083 Score=78.21 Aligned_cols=59 Identities=19% Similarity=0.272 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHHHhhH
Q 045448 179 DKADSELETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLDERASKA 237 (1756)
Q Consensus 179 ~eaEeEIdeLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~eRA~kA 237 (1756)
..+..++..+..+|..|+.|.+........++..+-.++.++...+.+..++...++.+
T Consensus 173 ~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra 231 (1195)
T KOG4643|consen 173 LHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRA 231 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35688999999999999999999999999999999999999999998888776544433
No 37
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.59 E-value=0.0096 Score=77.78 Aligned_cols=171 Identities=23% Similarity=0.263 Sum_probs=116.9
Q ss_pred HHhhhhhhhhhhHHHHHHHHhHHHHHHHHHhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHhHHhHhhhhhHHHHhHhHH
Q 045448 709 LEHSLAGANVELEGLRAKSKSLEDFCRMLKNEKSNLLNERSTLVSQLEDVEKRLGNLERRFTKLEEKYADIEREKESTLS 788 (1756)
Q Consensus 709 LE~SLSd~n~ELe~lR~K~K~lEEscq~l~~ekS~L~~Ek~~L~SQL~~~t~~l~~Le~k~t~LE~~~s~~~~Eke~~~~ 788 (1756)
|++-|--+...++..+...+.-+...+.|..|--.|..|..++=+||..+......|......|+.+..++..+.+.+..
T Consensus 792 l~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~ 871 (1174)
T KOG0933|consen 792 LEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQA 871 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Confidence 34444555666677777777777778888888888888888888888888888888888888888888888888777777
Q ss_pred HHHHH------------------------HHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHH---------
Q 045448 789 QVEEL------------------------RYSLTNEQLERANYVQSSESRMVDLESLVHQLQEETTLRKKE--------- 835 (1756)
Q Consensus 789 qv~~L------------------------~~~L~~e~e~~~~~~~s~e~~l~~le~~i~~Lqee~~~~~~e--------- 835 (1756)
++.+. .+....++.+++..+..+++.-++..+.+..|..++.+...+
T Consensus 872 el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt 951 (1174)
T KOG0933|consen 872 ELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGT 951 (1174)
T ss_pred HHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCC
Confidence 77554 222456677777778888888888888888888888777643
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhHHHhHHHHHhhh
Q 045448 836 -FEEELDKAVKAQVEIFILQKFIKDLEE----KNLSLLIECQKHVEASK 879 (1756)
Q Consensus 836 -~e~e~~k~~~aq~ei~ilq~~l~d~ee----kn~sLl~ecqk~~e~~k 879 (1756)
|.-+-.-...|-=++-=||--..-|+- +|+++|-.|++...+.+
T Consensus 952 ~yDf~~~~p~~are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~lk 1000 (1174)
T KOG0933|consen 952 DYDFESYDPHEAREELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAALK 1000 (1174)
T ss_pred ccccccCCHhHHHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 111111111122222225555555554 78888888877655533
No 38
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.59 E-value=0.0076 Score=76.35 Aligned_cols=62 Identities=13% Similarity=0.196 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 345 QTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGA 406 (1756)
Q Consensus 345 rierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~ 406 (1756)
.+.....|+..+++++..+-+.|...+-+..........-...+..+..++.+++..++...
T Consensus 131 eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~ 192 (522)
T PF05701_consen 131 ELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAK 192 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666666666666666555555555555555555555555555555443
No 39
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.58 E-value=0.0024 Score=81.90 Aligned_cols=179 Identities=19% Similarity=0.240 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHHHHHHHhhhhcH---HHHHh
Q 045448 188 LKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLDERASKADIEVKVLKEALIRLEAERDAGL---LQYNH 264 (1756)
Q Consensus 188 LQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~eRA~kAE~EIqsLKetLakLEsekdasl---lQyqq 264 (1756)
|+-++..|..+.+.++.+-.+-+.|+.++|+ |.=.+..+.+.-.+.-..+-.|+..|-....+.+..+ .+|+.
T Consensus 229 Lr~QvrdLtEkLetlR~kR~EDk~Kl~Elek----mkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~ 304 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLRLKRAEDKAKLKELEK----MKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKE 304 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888888888887777777777776653 1111112222111111111122222211111111111 11222
Q ss_pred HHHHHH-----------HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHH
Q 045448 265 CLERIS-----------TLEKMIIQAQEDSKGLNERASKAEIEAQKLKQELSRLENEK-EAGLLQYKQCLEMIYALESKI 332 (1756)
Q Consensus 265 ~lErLS-----------~LE~~Ls~AQeelk~L~ERa~kAE~Ele~LKqeL~~lEaEk-Ea~llQykQ~lEkIseLEkKI 332 (1756)
....+. -.|.+...+|.++..+.+|+...+.+++.|+.++...-... -..-.|++|+...=..|..-+
T Consensus 305 emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdal 384 (1243)
T KOG0971|consen 305 EMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDAL 384 (1243)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHH
Confidence 222111 23334455666666666666666666666666655431111 111134777777777777777
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 045448 333 SLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAI 370 (1756)
Q Consensus 333 s~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal 370 (1756)
+.++--...-++...++..|...++.++..|..-|+-+
T Consensus 385 VrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~L 422 (1243)
T KOG0971|consen 385 VRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERL 422 (1243)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77776666666666677777777777775555544443
No 40
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.54 E-value=0.0023 Score=82.12 Aligned_cols=302 Identities=19% Similarity=0.231 Sum_probs=169.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHH
Q 045448 509 DLEEGIEQVKRENQSLVELNSSSTITIQNLQNEIFNLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIMGLSRRYQALV 588 (1756)
Q Consensus 509 ~l~~~~~~~~ee~~~L~eln~sS~~~i~~L~~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln~~~~~l~ 588 (1756)
.+++.|-.+..++-.|..--.+-+-.-+.|...+..+++.+..+..-|+..-.+...|+..-.....-++.....|+.+.
T Consensus 171 Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~ 250 (617)
T PF15070_consen 171 ELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLA 250 (617)
T ss_pred HHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555554444443333233333446666666666666666555555555556666555444444444444555555
Q ss_pred HHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHhHHHHHHHHHHHhHhhhcccccchhhhHHHHH
Q 045448 589 EQVLSVGLNPEHLGSAVKELQEENSKLKEVCKEQGDEKEVLHEKLKNMDNLLKKNAALEGSLSEMNIKLEGSGERVNDLQ 668 (1756)
Q Consensus 589 E~~~s~~l~~~s~~~~i~~Lq~en~kLkE~~~~~~~Ek~~l~ekl~~~e~L~~k~~~le~sls~~~~ele~lr~~vk~Lq 668 (1756)
.+...+..-.--....+..||.+...-+-..+....| |.+.-..++.+...|..|..+|+.+-...+|-+.......
T Consensus 251 ~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~E---Lq~~qe~Lea~~qqNqqL~~qls~~~~~~eg~~~~~~~~~ 327 (617)
T PF15070_consen 251 SEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQE---LQEAQEHLEALSQQNQQLQAQLSLMALPGEGDGLESESEE 327 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHHHHHhhhHHHHHHHHhhcCCCCCccccccccc
Confidence 5554443211111233456666655555555555544 3444566778899999999999987666655433222111
Q ss_pred HHhhHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhhhhhHHHHHHHHhHHHHHHHHHhhhhhhhhhH
Q 045448 669 KSCQFLREEKSSLVAEKATLLSQLQIMTENMQKLLEKNVTLEHSLAGANVELEGLRAKSKSLEDFCRMLKNEKSNLLNER 748 (1756)
Q Consensus 669 e~~~~Lke~~s~~~sEK~aL~~qlq~~~~~m~kLlEkns~LE~SLSd~n~ELe~lR~K~K~lEEscq~l~~ekS~L~~Ek 748 (1756)
++-..-...+.....-+.++ ..|+...+..+-.|-+.+|..++.-...|+.+...-..+..+.
T Consensus 328 ee~~~~~~~ipEd~es~E~m-----------------~~f~~~a~~~~eeEr~~L~~qL~eqk~~~q~L~h~va~~q~e~ 390 (617)
T PF15070_consen 328 EEAPQPMPSIPEDLESREAM-----------------VEFFNSALAQAEEERARLRRQLEEQKVQCQHLAHQVASAQKEP 390 (617)
T ss_pred ccccCcCcccccccccHHHH-----------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Confidence 11110111111111111111 3567778888888999999999999999999998888888777
Q ss_pred HHHHhh------------HHHHHHHHHHHHHHHhHHhHhhhhhHHHHhHhHHHHHHHHHHHHHHHHHHHhh-------hh
Q 045448 749 STLVSQ------------LEDVEKRLGNLERRFTKLEEKYADIEREKESTLSQVEELRYSLTNEQLERANY-------VQ 809 (1756)
Q Consensus 749 ~~L~SQ------------L~~~t~~l~~Le~k~t~LE~~~s~~~~Eke~~~~qv~~L~~~L~~e~e~~~~~-------~~ 809 (1756)
...... -..+...|.+|+.+|+.+=...+|+.-+++.+-.-+.- |..|.+-...| =.
T Consensus 391 e~~a~~~~~~~dsV~~E~h~aLq~amekLq~~f~~~~~e~adl~e~~e~le~~~~q----l~~et~ti~eyi~ly~~qr~ 466 (617)
T PF15070_consen 391 EAEAPAPGTGGDSVPGETHQALQEAMEKLQSRFMDLMEEKADLKERVEKLEHRFIQ----LSGETDTIGEYITLYQSQRA 466 (617)
T ss_pred cccccCcccCCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----hccCccchhhhhcccccccc
Confidence 655322 23445688888888888777777776665554444333 33333332233 23
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHH
Q 045448 810 SSESRMVDLESLVHQLQEETTLRKK 834 (1756)
Q Consensus 810 s~e~~l~~le~~i~~Lqee~~~~~~ 834 (1756)
....|....+..|..|-.+...|+.
T Consensus 467 ~~k~r~~e~~~~i~~l~~~~e~mk~ 491 (617)
T PF15070_consen 467 VLKQRHQEKEEYISRLAQDREEMKV 491 (617)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566667666655555554
No 41
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.53 E-value=0.00013 Score=83.35 Aligned_cols=143 Identities=24% Similarity=0.314 Sum_probs=94.6
Q ss_pred HHHHHHHHhhhcHHHHHhhHHHHHHHHHHHHHHHHHhhhhcHHHHHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 045448 218 RELNHAQKDAGGLDERASKADIEVKVLKEALIRLEAERDAGLLQYNHCLERISTLEKMIIQAQEDSKGLNERASKAEIEA 297 (1756)
Q Consensus 218 kEIse~QKel~EL~eRA~kAE~EIqsLKetLakLEsekdasllQyqq~lErLS~LE~~Ls~AQeelk~L~ERa~kAE~El 297 (1756)
..+..++..+.....++..++.++.++..++..++..-+..-..+.....+|..++..........+.+..+....+..+
T Consensus 15 ~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri 94 (237)
T PF00261_consen 15 ERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERI 94 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33444455555666777788888888888888888876666666777778888888888877777777877777777777
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045448 298 QKLKQELSRLENEKEAGLLQYKQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQAL 360 (1756)
Q Consensus 298 e~LKqeL~~lEaEkEa~llQykQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL 360 (1756)
..|...+.......+.+-..|.....++..++..+..++..+.....++..++.++......+
T Consensus 95 ~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~l 157 (237)
T PF00261_consen 95 EELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNL 157 (237)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence 777777776655545544445555555555555555555555555555555555544444444
No 42
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=0.014 Score=75.19 Aligned_cols=549 Identities=19% Similarity=0.169 Sum_probs=268.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHH---
Q 045448 300 LKQELSRLENEKEAGLLQYKQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQ--- 376 (1756)
Q Consensus 300 LKqeL~~lEaEkEa~llQykQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q--- 376 (1756)
|......+....+........+.+.+..+-.+|+..++.+..+..+++-+..+++..+..-..|+--++.++..-.-
T Consensus 53 L~~e~e~Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~~~~~~t~~~ 132 (698)
T KOG0978|consen 53 LAEENEKLQNLADHLQEKHATLSEQISELLDKISTAETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEALEHLNTYGN 132 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 33333344444455444466777888888888888888888888888888888888777766666555554433221
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 045448 377 ----CLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQ-REL 451 (1756)
Q Consensus 377 ----~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKq-eE~ 451 (1756)
..-.++..-.++......+..+.......-.+++.+......+.+++..+..++..+..+......++...+ ||-
T Consensus 133 ~~~~~~~~~t~~~t~~~~l~~~iee~~~~~~~~~~ele~lq~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~NE~ 212 (698)
T KOG0978|consen 133 GNGSLSGTITVNSTELEELRDEIEELRELASTRMEELEKLQLYSDEILRQLDRFRVELRSLKEKVRSETFELRCLQYNEE 212 (698)
T ss_pred cccccCcccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhh
Confidence 112223333344444444555555555555555556665566666777777777777777777777766554 111
Q ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHhhhccc
Q 045448 452 ENLQASLQDEQSRFAQVEVTLQTLQKLHSQSQHEQKALTLELQNKLQKMKDMEVCNHDLEEGIEQVKRENQSLVELNSSS 531 (1756)
Q Consensus 452 e~Lqs~IqdE~~K~~q~E~al~~Le~l~sqsQeE~~~La~El~~~~~~L~~lE~~k~~l~~~~~~~~ee~~~L~eln~sS 531 (1756)
-.......+++..... .-.++.-..+...+-+++-.+...-....+-...-+.++.-.+..+.+..+.|-..
T Consensus 213 l~~~~~~~~e~~~~~~----~~~lee~~~~~~~e~~~l~~~~e~~~~~~~~~~~in~e~~~L~Ssl~e~~~~l~~~---- 284 (698)
T KOG0978|consen 213 LQRKTMESDEAINSKK----VIKLEEKLAQCVKEYEMLRKEFENNKSQNDLFSSINREMRHLISSLQEHEKLLKEY---- 284 (698)
T ss_pred cccccchhhhhhccch----HHHHHHHHHHHHHHHHHHHHhHHHhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH----
Confidence 1111111111111110 12233333333333333332221111111101111111111111111111111110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCCCccchHHHHHHHHHH
Q 045448 532 TITIQNLQNEIFNLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIMGLSRRYQALVEQVLSVGLNPEHLGSAVKELQEE 611 (1756)
Q Consensus 532 ~~~i~~L~~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln~~~~~l~E~~~s~~l~~~s~~~~i~~Lq~e 611 (1756)
....+.-...+.+++.....+..=+.-.......|..+++++..++.++++. +.+ -+.++.+.++.-
T Consensus 285 ~~~~k~t~~~~~~lr~~~~s~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~---~~~----------~~~~~~~~~~~~ 351 (698)
T KOG0978|consen 285 ERELKDTESDNLKLRKQHSSAADSLESKSRDLESLLDKIQDLISQEAELSKK---LRS----------KLLESAKKLKIL 351 (698)
T ss_pred HHHHhcccchHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHH---HHH----------HHHHHHHHHHhH
Confidence 0001111112222222222221111112223344555555555555555531 111 112223333333
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHhHhHHHHHHHHHHHhHhh-----hcccccchhhhHHHHHHHhhHHHHHHhhhhHHHH
Q 045448 612 NSKLKEVCKEQGDEKEVLHEKLKNMDNLLKKNAALEGSLSE-----MNIKLEGSGERVNDLQKSCQFLREEKSSLVAEKA 686 (1756)
Q Consensus 612 n~kLkE~~~~~~~Ek~~l~ekl~~~e~L~~k~~~le~sls~-----~~~ele~lr~~vk~Lqe~~~~Lke~~s~~~sEK~ 686 (1756)
.-...+.+.+..+-..+-.+.+..+....+.|-.+...-.+ +..++++++..++++...-.+=...
T Consensus 352 ~~~~~~e~~k~~di~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k--------- 422 (698)
T KOG0978|consen 352 LREKDRESQKERDILVAKSELLKTNELRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRK--------- 422 (698)
T ss_pred HHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 33444444444443333232222222222222111111111 3333333333333332221111000
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhHHhhhhhhhhhhHHHHHHHHhHHHHHHHHHhhhhhhhhhHHHHHhhHHHHHHHHHHHH
Q 045448 687 TLLSQLQIMTENMQKLLEKNVTLEHSLAGANVELEGLRAKSKSLEDFCRMLKNEKSNLLNERSTLVSQLEDVEKRLGNLE 766 (1756)
Q Consensus 687 aL~~qlq~~~~~m~kLlEkns~LE~SLSd~n~ELe~lR~K~K~lEEscq~l~~ekS~L~~Ek~~L~SQL~~~t~~l~~Le 766 (1756)
-.+...+....++-...++|+.+.+.+. .|.+|-.+.=+-.+.+.+...+|.
T Consensus 423 -----------------~~~d~~~r~~~~~~~~~e~Lqk~~~~~k-----------~ll~e~~t~gsA~ed~Qeqn~kL~ 474 (698)
T KOG0978|consen 423 -----------------QALDDAERQIRQVEELSEELQKKEKNFK-----------CLLSEMETIGSAFEDMQEQNQKLL 474 (698)
T ss_pred -----------------hhhHHHHHhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122233333444555666666665554 667777777788888888888999
Q ss_pred HHHhHHhHhhhhhHHHHhHhHHHHHHHHHH---HHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 767 RRFTKLEEKYADIEREKESTLSQVEELRYS---LTNEQLERANYVQSSESRMVDLESLVHQLQEETTLRKKEFEEELDKA 843 (1756)
Q Consensus 767 ~k~t~LE~~~s~~~~Eke~~~~qv~~L~~~---L~~e~e~~~~~~~s~e~~l~~le~~i~~Lqee~~~~~~e~e~e~~k~ 843 (1756)
...+.=++.++-+=.|+..+.....-|... |........++....+.++..+|.+.+.|+.-.....++....
T Consensus 475 ~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~---- 550 (698)
T KOG0978|consen 475 QELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTL---- 550 (698)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHH----
Confidence 999999999999999999999998877443 5555555666666667777777777777766666665554433
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHhhhhhHHHHHHHhhhhhH-------HHHHHHHHHHHHHHHHHHH
Q 045448 844 VKAQVEIFILQKFIKDLEEKNLSLLIECQKHVEASKLSDKLIAELESENLE-------QQVETEFLLDELEKLRTGI 913 (1756)
Q Consensus 844 ~~aq~ei~ilq~~l~d~eekn~sLl~ecqk~~e~~k~se~~iseLE~e~~~-------~q~e~~~l~~~~~~lr~gi 913 (1756)
++-+-++.+-+.|+...--.|.++..+.-.-.+-....+++++.+.-- -|+|..-|-.....++.+.
T Consensus 551 ---~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~ 624 (698)
T KOG0978|consen 551 ---TQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEE 624 (698)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 344666777777777766666655555444333334444444444322 2444444444444444433
No 43
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.50 E-value=5.7e-07 Score=116.34 Aligned_cols=71 Identities=28% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHHHHHHHhh
Q 045448 182 DSELETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLDERASKADIEVKVLKEALIRLEAER 255 (1756)
Q Consensus 182 EeEIdeLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~eRA~kAE~EIqsLKetLakLEsek 255 (1756)
..++..++.+|..++.+++.++... ......++++++.++..+.....++..++..++.+...-..++.+.
T Consensus 60 ~~e~~~~k~~l~~Le~e~~~~~~e~---~~~~~~le~~~~~l~~~~~~~~~~~~ele~~~~~l~~~~~~le~el 130 (722)
T PF05557_consen 60 RAELIELKAQLNQLEYELEQLKQEH---ERAQLELEKELRELQRQLEREFKRNQELEARLKQLEEREEELEEEL 130 (722)
T ss_dssp --------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666655433 3333455566666666665555555555555555555555555443
No 44
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=98.44 E-value=0.03 Score=75.84 Aligned_cols=262 Identities=21% Similarity=0.148 Sum_probs=142.1
Q ss_pred HHHHHHHHHHhhHHHHhhHHHHHHHhhhHHHHhhhhhhhHHHHHHHHhhccchhhhchhhhhhHHHHHHHHHhhhhhhhc
Q 045448 1022 EEAYLTLQEENSKLLEEDRLLYERFLGLKKEISALEEENIVLLQEALDLGNVSTVFKSFGIEKAEEVKALFEDLNHLHMT 1101 (1756)
Q Consensus 1022 ~~s~~~lq~e~~~~~~e~~sL~~~~~~l~e~~~~leden~~~l~E~~~~~~ls~~~~~~~~e~~~~l~~l~~~~~~l~~~ 1101 (1756)
-.++..++.|-.++.++...+.+.+..+..+.-..+.+++-+. .+++++......+.+-+..+..+
T Consensus 818 i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~--------------~~~~e~k~~~~~~~~~l~~~~ql 883 (1294)
T KOG0962|consen 818 IRTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLI--------------NLRNELKEEKQKIERSLARLQQL 883 (1294)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567788888888888899999988888877776666665443 34555555555544444433322
Q ss_pred chhhhHHHHHHhhhhhhHhHhhhhhhHhHHHHHHHHHhhhchhhhhhhHHhhhchhhhhhhhhHHHHHHHHHHhhhhhHH
Q 045448 1102 NGELQGKVELLGRKLEMKEAEGLHLNETVDKLQKELHEVSDLNDQLNIQIFIGHDSLRQKASDLLEAEQKLKATHNLNVE 1181 (1756)
Q Consensus 1102 ~~~L~~~v~~l~~kl~~~e~e~~~l~~~~~~~~~eL~~~~s~~~~l~~q~~~~~~~l~~k~~~lle~~~~~~~~~~~~~e 1181 (1756)
..++..+....-.+-..-.++...|-.+..+|.+..|.-.++..+ ++..-..|.++++-.+..+..
T Consensus 884 ----e~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~----------~~~~~~~aqk~~~~ine~~s~ 949 (1294)
T KOG0962|consen 884 ----EEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNE----------RNTSEKLAQKKRNDINEKVSL 949 (1294)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHH----------hhHHHHHHHHHHHHHHHHHHH
Confidence 222222233333333333333334444444555555555554433 222334444455555555555
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhHHHHHHhhhhhhhhHHHHhHHHhhHHHHHHHHHhHHHHHHHHhhhhhhchHHHhhhh
Q 045448 1182 LCITVEDLKRECDELKLIKENAEKRILEISRDCSKQERELECLQEVNKSLEAEVGILHDEIEEHRIREVYLSSELQERSN 1261 (1756)
Q Consensus 1182 l~~~v~~l~~~~~e~~~~~~~~e~~i~~ls~~~~~q~~ei~~l~e~n~~L~~e~~~l~~e~~~~~~re~~l~~el~~~~~ 1261 (1756)
|+..+..-....+... .+.+ +..+..+.+-+..+..+++...+=+--...+|..|-.=+..+.-
T Consensus 950 l~~~~~~~~~~~~~~~-----~~~~-----------~~~l~~~~e~l~~~~~~~~~~~~~l~~~~~~er~l~dnl~~~~l 1013 (1294)
T KOG0962|consen 950 LHQIYKLNECFEQYGF-----DDLR-----------IAQLSESEEHLEERDNEVNEIKQKIRNQYQRERNLKDNLTLRNL 1013 (1294)
T ss_pred HHHHHHhHHHHHHHhh-----hhhc-----------hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5555544333322211 1111 22222333334444445555555555566666666666666655
Q ss_pred hhhhhHHHHHHhhhhhhHhHHHHHHHHhHHHHHHHHhhhhcccccchhhhHHHHHHHhhhhhhhhhhhhhhcc
Q 045448 1262 EFELWESEATSFYFDLQMSSTREVLLENKVHELAEVCESLEDGSATKSLESKQMKERIGSLESEIGRLKSRLS 1334 (1756)
Q Consensus 1262 e~~~~e~e~~~~~~dlq~ssv~~~l~e~kv~El~~~c~~le~~~~~k~~~i~~lkerv~~lE~En~~Lk~~Ls 1334 (1756)
+-++-+-+=..+++|.||...--+.+.+...-|.. |..+. +++-..+-..+.-++..+..++.+|.
T Consensus 1014 ~~q~~e~~re~~~ld~Qi~~~~~~~~~ee~~~L~~-~~~~l------~se~~~~lg~~ke~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1014 ERKLKELERELSELDKQILEADIKSVKEERVKLEE-EREKL------SSEKNLLLGEMKQYESQIKKLKQELR 1079 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHh------hhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 66666666677889999998886666665544433 33322 23344455566666777777777776
No 45
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.40 E-value=0.043 Score=75.84 Aligned_cols=135 Identities=21% Similarity=0.275 Sum_probs=71.7
Q ss_pred HHhhHHhhhhhhhhhhHHHHHHHHhHHHHHHHHHhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHhHHhHhhhhhHHHHh
Q 045448 705 KNVTLEHSLAGANVELEGLRAKSKSLEDFCRMLKNEKSNLLNERSTLVSQLEDVEKRLGNLERRFTKLEEKYADIEREKE 784 (1756)
Q Consensus 705 kns~LE~SLSd~n~ELe~lR~K~K~lEEscq~l~~ekS~L~~Ek~~L~SQL~~~t~~l~~Le~k~t~LE~~~s~~~~Eke 784 (1756)
.+.-.-....+....++.+...++..... +..++..|.....+=|+--..=+..+..|..+...|+..+..+..-..
T Consensus 719 ~~~~~~~~~~~~d~~i~~i~~~i~~~~~~---~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~ 795 (1201)
T PF12128_consen 719 LKAQWQELEAELDEQIEQIKQEIAAAKQE---AKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRA 795 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33333333344444444444444333322 334444444444444444444455666667777666666665544333
Q ss_pred HhHHHHHHHH------HHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 785 STLSQVEELR------YSLTNEQLERANYVQSSESRMVDLESLVHQLQEETTLRKKEFEEELDK 842 (1756)
Q Consensus 785 ~~~~qv~~L~------~~L~~e~e~~~~~~~s~e~~l~~le~~i~~Lqee~~~~~~e~e~e~~k 842 (1756)
-+..=-.-++ ..+..++-.+...+...+.++..++..+..++.++.....+++.....
T Consensus 796 ~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~ 859 (1201)
T PF12128_consen 796 EVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKA 859 (1201)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222111111 124446677777777777777777777777777777777777666655
No 46
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.31 E-value=0.00052 Score=78.45 Aligned_cols=208 Identities=24% Similarity=0.260 Sum_probs=97.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHHHHHHHhhhhc
Q 045448 179 DKADSELETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLDERASKADIEVKVLKEALIRLEAERDAG 258 (1756)
Q Consensus 179 ~eaEeEIdeLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~eRA~kAE~EIqsLKetLakLEsekdas 258 (1756)
+.+...+..+..++.......+..+..+.....++..+|..+......+.....+...++.........+..|+..
T Consensus 11 d~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r---- 86 (237)
T PF00261_consen 11 DEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENR---- 86 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----
Confidence 3344444444444444444444444444444444444444444444444444445555544444444444444444
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 259 LLQYNHCLERISTLEKMIIQAQEDSKGLNERASKAEIEAQKLKQELSRLENEKEAGLLQYKQCLEMIYALESKISLAEEN 338 (1756)
Q Consensus 259 llQyqq~lErLS~LE~~Ls~AQeelk~L~ERa~kAE~Ele~LKqeL~~lEaEkEa~llQykQ~lEkIseLEkKIs~lEe~ 338 (1756)
....-++|..++..+..+.. ++..++..+......|..++...+.+-.+...+..+|..|+..|..+...
T Consensus 87 ---~~~~eeri~~lE~~l~ea~~-------~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~ 156 (237)
T PF00261_consen 87 ---EQSDEERIEELEQQLKEAKR-------RAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNN 156 (237)
T ss_dssp ---HHHHHHHHHHCHHHHHHHHH-------HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Confidence 44444555555555554444 44444444444444555444444444444444555555555555555555
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 339 AGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQ 414 (1756)
Q Consensus 339 v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe 414 (1756)
+.++.....++..-.+.+...|.. ...++...+.....++..+..|...+..+...+...+.
T Consensus 157 lk~lE~~~~~~~~re~~~e~~i~~--------------L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~ 218 (237)
T PF00261_consen 157 LKSLEASEEKASEREDEYEEKIRD--------------LEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKE 218 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555444443333333333311 11222444444444444444444444444444444444
No 47
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.29 E-value=0.054 Score=72.45 Aligned_cols=173 Identities=22% Similarity=0.242 Sum_probs=84.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 368 EAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQK 447 (1756)
Q Consensus 368 eal~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eK 447 (1756)
+...-++....+.+..++..+...++.....+-++..+...-.+..+.....+.+ ++. ..+.-+++++..++.+.
T Consensus 612 e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~--~~e---~~~e~~lk~~q~~~eq~ 686 (1317)
T KOG0612|consen 612 EKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKE--ALE---IKLERKLKMLQNELEQE 686 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH--HHH---HHHHHHHHHHHHHHHHH
Confidence 4444455555666677777777777776666666666555222222222222222 111 12233444444444444
Q ss_pred HHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHH
Q 045448 448 QRELENLQASLQDEQSRFAQVEVTLQTLQKLHSQS---QHEQKALTLELQNKLQKMKDMEVCNHDLEEGIEQVKRENQSL 524 (1756)
Q Consensus 448 qeE~e~Lqs~IqdE~~K~~q~E~al~~Le~l~sqs---QeE~~~La~El~~~~~~L~~lE~~k~~l~~~~~~~~ee~~~L 524 (1756)
..|..++ ++...|+++..+++-.+.- .+.+.+++.++. ++...|
T Consensus 687 ~~E~~~~---------~L~~~e~~~~e~~~~lseek~ar~k~e~~~~~i~------------------------~e~e~L 733 (1317)
T KOG0612|consen 687 NAEHHRL---------RLQDKEAQMKEIESKLSEEKSAREKAENLLLEIE------------------------AELEYL 733 (1317)
T ss_pred HHHHHHH---------HHhhHHHHHHHHHHHhcccccHHHHHHHHHHHHH------------------------HHHHHH
Confidence 4444444 4444466666666555543 334444444443 333333
Q ss_pred HhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 045448 525 VELNSSSTITIQNLQNEIFNLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIM 578 (1756)
Q Consensus 525 ~eln~sS~~~i~~L~~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~ 578 (1756)
..-.-+++..+..+...-..+.....+|+.=+..-++.++.++.++.+...+..
T Consensus 734 ~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLssq~~~~~ 787 (1317)
T KOG0612|consen 734 SNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELKSQEQEVN 787 (1317)
T ss_pred hhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHhhc
Confidence 333333333333333333444444445554444445577778777776555543
No 48
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.27 E-value=4.7e-06 Score=108.05 Aligned_cols=76 Identities=24% Similarity=0.244 Sum_probs=0.0
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHh------------------HHHHHHHHHHHhHhhhcccc
Q 045448 596 LNPEHLGSAVKELQEENSKLKEVCKEQGDEKEVLHEKLKNMD------------------NLLKKNAALEGSLSEMNIKL 657 (1756)
Q Consensus 596 l~~~s~~~~i~~Lq~en~kLkE~~~~~~~Ek~~l~ekl~~~e------------------~L~~k~~~le~sls~~~~el 657 (1756)
-+|..+...|..||.++.-|.+.+-....+...+...+.+++ .+.....-|+.+..-+.-+.
T Consensus 336 ~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~ 415 (722)
T PF05557_consen 336 DSPEDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKER 415 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666777666666655555554444333222211111 12223344566666666666
Q ss_pred cchhhhHHHHHHHh
Q 045448 658 EGSGERVNDLQKSC 671 (1756)
Q Consensus 658 e~lr~~vk~Lqe~~ 671 (1756)
|++|.-++.+..+.
T Consensus 416 d~LR~~L~syd~e~ 429 (722)
T PF05557_consen 416 DYLRAQLKSYDKEE 429 (722)
T ss_dssp --------------
T ss_pred HHHHHHHHHhhhhh
Confidence 66666666665543
No 49
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.24 E-value=0.071 Score=71.79 Aligned_cols=83 Identities=22% Similarity=0.314 Sum_probs=38.6
Q ss_pred hhhhHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 776 YADIEREKESTLSQVEELRYSLTNEQLERANYVQSSESRMVDLESLVHQLQEETTLRKKEFEEELDKAVKAQVEIFILQK 855 (1756)
Q Consensus 776 ~s~~~~Eke~~~~qv~~L~~~L~~e~e~~~~~~~s~e~~l~~le~~i~~Lqee~~~~~~e~e~e~~k~~~aq~ei~ilq~ 855 (1756)
+..+..+++....++..+...+..-. .+...+.+...++..+.+++..+.. ....-..+..-..+ +.+.++|+++
T Consensus 690 ~~~~~~el~~~~~~l~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~---~~~~~~~~~~ 764 (908)
T COG0419 690 LEQLEEELEQLREELEELLKKLGEIE-QLIEELESRKAELEELKKELEKLEK-ALELLEELREKLGK---AGLRADILRN 764 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhH---HHHHHHHHHH
Confidence 44455555555555555555544411 3333333333333333333333331 11112222333333 4468888888
Q ss_pred HHHHHHHh
Q 045448 856 FIKDLEEK 863 (1756)
Q Consensus 856 ~l~d~eek 863 (1756)
.++.+...
T Consensus 765 ~~~~i~~~ 772 (908)
T COG0419 765 LLAQIEAE 772 (908)
T ss_pred HHHHHHHH
Confidence 88887763
No 50
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.16 E-value=0.067 Score=68.63 Aligned_cols=223 Identities=15% Similarity=0.125 Sum_probs=107.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHHHHHHHhhh
Q 045448 177 AEDKADSELETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLDERASKADIEVKVLKEALIRLEAERD 256 (1756)
Q Consensus 177 r~~eaEeEIdeLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~eRA~kAE~EIqsLKetLakLEsekd 256 (1756)
.+..+...|+....++..+..+...+..+-+..+..+..+...+..+++.+..-.- .....+..|.+.|..++..
T Consensus 106 ~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~---~~G~a~~~le~~l~~~e~~-- 180 (569)
T PRK04778 106 EINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRF---SFGPALDELEKQLENLEEE-- 180 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---cccchHHHHHHHHHHHHHH--
Confidence 35667888888888888888888888888888888888888888888887653221 1222334444444444433
Q ss_pred hcHHHHHhHHH--HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHH-----HHHHHHHH
Q 045448 257 AGLLQYNHCLE--RISTLEKMIIQAQEDSKGLNERASKAEIEAQK----LKQELSRLENEKEAGLLQ-----YKQCLEMI 325 (1756)
Q Consensus 257 asllQyqq~lE--rLS~LE~~Ls~AQeelk~L~ERa~kAE~Ele~----LKqeL~~lEaEkEa~llQ-----ykQ~lEkI 325 (1756)
+.++....+ ........+..+..+...+...+...=.=+.. +=+.|..+.........+ .......|
T Consensus 181 --f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i 258 (569)
T PRK04778 181 --FSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEI 258 (569)
T ss_pred --HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHH
Confidence 222222221 11111112222222222222111111111111 112222222222222211 11233455
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 326 YALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMG 405 (1756)
Q Consensus 326 seLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l 405 (1756)
..+.++|..+...+.++ .++.++..++.+...|..|-+--+.-+.-++..-..+..+...+.++.+....+..+++.+
T Consensus 259 ~~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l 336 (569)
T PRK04778 259 QDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRV 336 (569)
T ss_pred HHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555544333333 3334444444444444444433344444455556666667777777777777766666666
Q ss_pred HHH
Q 045448 406 AEK 408 (1756)
Q Consensus 406 ~~k 408 (1756)
...
T Consensus 337 ~~s 339 (569)
T PRK04778 337 KQS 339 (569)
T ss_pred HHc
Confidence 554
No 51
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.14 E-value=0.09 Score=69.05 Aligned_cols=260 Identities=18% Similarity=0.236 Sum_probs=166.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhHHHHHHHHHHhhhcHH---------------------
Q 045448 178 EDKADSELETLKKTLAEIEAEKEAILMQYQQSL-----QKFSSLERELNHAQKDAGGLD--------------------- 231 (1756)
Q Consensus 178 ~~eaEeEIdeLQkkI~aLQTEKE~LesQyEe~k-----eKLsElEkEIse~QKel~EL~--------------------- 231 (1756)
..+.+..+.-+-..+..|..|++.+. .|++.- -.|.-.++++.+....+..++
T Consensus 186 ~ekI~ell~yieerLreLEeEKeeL~-~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~ 264 (1200)
T KOG0964|consen 186 REKINELLKYIEERLRELEEEKEELE-KYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVE 264 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHH
Confidence 35566777777888889999988876 354332 234445555555555544332
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhhcHHHHHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 232 ERASKADIEVKVLKEALIRLEAERDAGLLQYNHCLERISTLEKMIIQAQEDSKGLNERASKAEIEAQKLKQELSRLENEK 311 (1756)
Q Consensus 232 eRA~kAE~EIqsLKetLakLEsekdasllQyqq~lErLS~LE~~Ls~AQeelk~L~ERa~kAE~Ele~LKqeL~~lEaEk 311 (1756)
+.......++..|...|..|..+++..-.++.....+...|+=+++.+|..+.+-.+..+.+...++.++.++...+.+.
T Consensus 265 d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL 344 (1200)
T KOG0964|consen 265 DESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDEL 344 (1200)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 23333344455556666666667777777788888888889999999999999888877788888888888888888888
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-------------HHHHHHHHHH--------------HHHHHHHhhhh
Q 045448 312 EAGLLQYKQCLEMIYALESKISLAEENAGMLN-------------EQTEKAETEV--------------KALKQALTGLN 364 (1756)
Q Consensus 312 Ea~llQykQ~lEkIseLEkKIs~lEe~v~sln-------------qrierle~Ei--------------~~LkqEL~~Le 364 (1756)
+...=.|+.+.+.-..+-.+|..++...+.+= +|=+=+++++ ..++.++..++
T Consensus 345 ~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e 424 (1200)
T KOG0964|consen 345 SKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLE 424 (1200)
T ss_pred HHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 88888888888888888888888877665552 2222223333 33455555555
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 045448 365 EEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQEL 444 (1756)
Q Consensus 365 eEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL 444 (1756)
.+..+....++.....|.+....+..+-.+.-.++.+.+.+..+-+.++. +=..++..++.+.+.+...++.|
T Consensus 425 ~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWR-------EE~~l~~~i~~~~~dl~~~~~~L 497 (1200)
T KOG0964|consen 425 SELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWR-------EEKKLRSLIANLEEDLSRAEKNL 497 (1200)
T ss_pred HHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555444444444445555555555555555555555555554 55556666666666666666555
Q ss_pred H
Q 045448 445 S 445 (1756)
Q Consensus 445 ~ 445 (1756)
.
T Consensus 498 ~ 498 (1200)
T KOG0964|consen 498 R 498 (1200)
T ss_pred H
Confidence 3
No 52
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.14 E-value=0.15 Score=71.52 Aligned_cols=597 Identities=15% Similarity=0.166 Sum_probs=267.6
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 045448 419 LERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQD---EQSRFAQVEVTLQTLQKLHSQSQHEQKALTLELQN 495 (1756)
Q Consensus 419 Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~Iqd---E~~K~~q~E~al~~Le~l~sqsQeE~~~La~El~~ 495 (1756)
|+..+.++...+.+...++..+++++...+.....+...... +.-+ +..+.|+..-..+..+. .+.+.+|.-+..
T Consensus 440 Le~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gk-v~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 517 (1486)
T PRK04863 440 AEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGE-VSRSEAWDVARELLRRL-REQRHLAEQLQQ 517 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cCHHHHHHHHHHHHHHh-HHHHHHHHhhHH
Confidence 455555555555555555555555555555544444333222 2222 33344443333333222 245566666667
Q ss_pred HHHhhhhhhhhhHhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 045448 496 KLQKMKDMEVCNHDLEEGIEQVKRENQSLVELNSSSTITIQNLQNEIFNLKEMKEKLEKEIALQEDKSNALQLEVRHLKE 575 (1756)
Q Consensus 496 ~~~~L~~lE~~k~~l~~~~~~~~ee~~~L~eln~sS~~~i~~L~~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~Ke 575 (1756)
....|.+|+..-+. +.....+-.++..=......+...+..+ .....+.+..|+.++.--+.....+++....+..
T Consensus 518 ~~~~~~~l~~~~~~-q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~ 593 (1486)
T PRK04863 518 LRMRLSELEQRLRQ-QQRAERLLAEFCKRLGKNLDDEDELEQL---QEELEARLESLSESVSEARERRMALRQQLEQLQA 593 (1486)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777653322 2222222222222112233444444444 4445566677887777788899999999999999
Q ss_pred HHhhhhHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-----------HHhHhHHHHHHH
Q 045448 576 EIMGLSRRYQALVEQVLSVGLNPEHLGSAVKELQEENSKLKEVCKEQGDEKEVLHEK-----------LKNMDNLLKKNA 644 (1756)
Q Consensus 576 E~~~Ln~~~~~l~E~~~s~~l~~~s~~~~i~~Lq~en~kLkE~~~~~~~Ek~~l~ek-----------l~~~e~L~~k~~ 644 (1756)
.+..|..++- .- ...++-..+|.+.|-..-.....++.- -..-+.+..+-.
T Consensus 594 ~i~~l~~~ap-------------~W-----~~a~~al~~L~eq~g~~~~~~~~v~~~mq~~~~~~~~~~~~~~~~~~~~~ 655 (1486)
T PRK04863 594 RIQRLAARAP-------------AW-----LAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQ 655 (1486)
T ss_pred HHHHHHHhCh-------------HH-----HhhHHHHHHHHHhcchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987332 11 112222233333333222222221111 112223444445
Q ss_pred HHHHhHhhhcccccchhhhHHHHH-HHhhH-HHHHHhhhhHHH----HHHHHHH--HHhHHHHHHHHHHHhhHHhhhhhh
Q 045448 645 ALEGSLSEMNIKLEGSGERVNDLQ-KSCQF-LREEKSSLVAEK----ATLLSQL--QIMTENMQKLLEKNVTLEHSLAGA 716 (1756)
Q Consensus 645 ~le~sls~~~~ele~lr~~vk~Lq-e~~~~-Lke~~s~~~sEK----~aL~~ql--q~~~~~m~kLlEkns~LE~SLSd~ 716 (1756)
.|++++..+...-.|....+..+- .--.. +-+.+.-...+. .|++... .+..++++...+.-.+|+--.-|+
T Consensus 656 ~L~~~i~~l~~~~~g~~~~l~~~~~~~~Gvlvsel~~~v~~~~~~~~~A~lg~~~~~iVv~d~~~A~~ai~~L~~~p~d~ 735 (1486)
T PRK04863 656 ALDEEIERLSQPGGSEDPRLNALAERFGGVLLSEIYDDVSLEDAPYFSALYGPARHAIVVPDLSDAAEQLAGLEDCPEDL 735 (1486)
T ss_pred HHHHHHHhhhccCCCccHHHHHHHHhcCCeehhHhhhccCcchHHHHHHHHHhhhCeEEeCCHHHHHHHHHhccCCccce
Confidence 555555555444444433333331 00001 112222011111 1222111 122233344444444444322221
Q ss_pred ---hhhhHHHHHHHHhHHHHHHHHHhhh-------------------------hhhhhhHHHHHhhHHHHHHHHHHHHHH
Q 045448 717 ---NVELEGLRAKSKSLEDFCRMLKNEK-------------------------SNLLNERSTLVSQLEDVEKRLGNLERR 768 (1756)
Q Consensus 717 ---n~ELe~lR~K~K~lEEscq~l~~ek-------------------------S~L~~Ek~~L~SQL~~~t~~l~~Le~k 768 (1756)
.--.+.++.-+=+.++....+-..- ..|..|+..+.-......-..+++..-
T Consensus 736 ~li~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~r~s~~p~~p~~gr~are~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~ 815 (1486)
T PRK04863 736 YLIEGDPDSFDDSVFSVEELEKAVVVKIADRQWRYSRFPEVPLFGRAAREKRIEQLRAEREELAERYATLSFDVQKLQRL 815 (1486)
T ss_pred eeecCChhHHhccCccHHHhcCCeeeeecchhhhhccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 2333444444444444332222221 245555555555555555555555555
Q ss_pred HhHHh---Hhhhhh------HHHHhHhHHHHHHHHHH---HHHHHHHHHhhhhhhHHHHHhHHHH---HHHHHHH-HHHH
Q 045448 769 FTKLE---EKYADI------EREKESTLSQVEELRYS---LTNEQLERANYVQSSESRMVDLESL---VHQLQEE-TTLR 832 (1756)
Q Consensus 769 ~t~LE---~~~s~~------~~Eke~~~~qv~~L~~~---L~~e~e~~~~~~~s~e~~l~~le~~---i~~Lqee-~~~~ 832 (1756)
|.-+- +.|..+ ..++..+..+.-++... +...-..+.+++...+..+..|.+. +..|-++ ...+
T Consensus 816 ~~~~~~~~~~~~~~~f~~~pe~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~ 895 (1486)
T PRK04863 816 HQAFSRFIGSHLAVAFEADPEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADETLADR 895 (1486)
T ss_pred HHHHHHHHhhCcchhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcCCccHHHH
Confidence 55544 355332 56666666665555333 3344444555555555555555543 3444444 6677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHhhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 045448 833 KKEFEEELDKAVKAQVEIFILQKFIKDLEEKNLSLLIECQKHVEASKLSDKLIAELESENLEQQVETEFLLDELEKLRTG 912 (1756)
Q Consensus 833 ~~e~e~e~~k~~~aq~ei~ilq~~l~d~eekn~sLl~ecqk~~e~~k~se~~iseLE~e~~~~q~e~~~l~~~~~~lr~g 912 (1756)
-.+.++++.+|..|.--+-=.++ -+...+..+..-..-+.-++.|.. +++.+....+.++.+
T Consensus 896 ~~~~~~~~~~~~~a~~y~~~~~~-----------~L~qLE~~l~~L~~Dp~~~e~lr~-------e~~~~~~~~~~~~~~ 957 (1486)
T PRK04863 896 VEEIREQLDEAEEAKRFVQQHGN-----------ALAQLEPIVSVLQSDPEQFEQLKQ-------DYQQAQQTQRDAKQQ 957 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhCCCHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 77788888887766621111112 222222233332333333333333 333333444444444
Q ss_pred HHHHHHHhccCC---CCCCccccccCccchhhhHhhHHHhhhhhhchhhhHHHHHHHHHHHHHHHHHhhhhchhhhhhhh
Q 045448 913 IYQVFRVLQFDP---ANWHEGKIEQGHIPIPQIVEDIEDLKSSVLRNEDEKQQLVIENTVLLTLIGQLRLDGAEQESGKK 989 (1756)
Q Consensus 913 i~qv~~~l~~~~---~~~~~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~q~~~~E~svl~t~L~q~~~e~~~l~~ek~ 989 (1756)
|.-+-.+.+.-. .-...+.+.+..-+...|-..|+.+......+....++.--+-.=.-+.+..+......+..+..
T Consensus 958 ~~~l~~~~~~~~~~~y~~~~~~l~~~~~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~ 1037 (1486)
T PRK04863 958 AFALTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQ 1037 (1486)
T ss_pred HHHHHHHHHHHHhccHHHHHhHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433222222111 11222233344445556666666666666665555544444433333333444444445555555
Q ss_pred hhHHHHHH-------HHHHHhhhhhhhHHHHHHhHHHhh--------HHHHHHHHHHhhHHHHhhHHHHHHHhhhHHHHh
Q 045448 990 IFEQELMS-------RTEQHMMLQKDKDELLEMNKQLML--------EEAYLTLQEENSKLLEEDRLLYERFLGLKKEIS 1054 (1756)
Q Consensus 990 ~l~~e~~~-------~~~q~~~Lq~~~~~lle~n~ql~~--------~~s~~~lq~e~~~~~~e~~sL~~~~~~l~e~~~ 1054 (1756)
.+++++.. .++.-+.... -+++.+|+. ...+...+.|+-.+...-..+.+.+..+.+.+.
T Consensus 1038 E~eqe~~~~g~~~~~~~~~~~~~~~-----~~l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~ 1112 (1486)
T PRK04863 1038 ELKQELQDLGVPADSGAEERARARR-----DELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVV 1112 (1486)
T ss_pred HHHHHHHHcCCCCCccHHHHHHHhH-----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555543 2233333321 345666665 333344444444444444444444444444444
Q ss_pred hhhhhhHH
Q 045448 1055 ALEEENIV 1062 (1756)
Q Consensus 1055 ~leden~~ 1062 (1756)
.+-+.-+.
T Consensus 1113 ~aK~~W~~ 1120 (1486)
T PRK04863 1113 NAKAGWCA 1120 (1486)
T ss_pred HHHHHHHH
Confidence 44443333
No 53
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.09 E-value=0.093 Score=67.25 Aligned_cols=29 Identities=24% Similarity=0.247 Sum_probs=22.0
Q ss_pred HHhhhhhhhhhhHHHHHHHHhHHHHHHHH
Q 045448 709 LEHSLAGANVELEGLRAKSKSLEDFCRML 737 (1756)
Q Consensus 709 LE~SLSd~n~ELe~lR~K~K~lEEscq~l 737 (1756)
..+-+.-+++|++.+|..++.++.-|-..
T Consensus 557 ~k~~~e~LqaE~~~lk~~l~~le~~~~~~ 585 (716)
T KOG4593|consen 557 KKNRLEELQAELERLKERLTALEGDKMQF 585 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 44556677889999999998888776544
No 54
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.07 E-value=0.1 Score=67.01 Aligned_cols=182 Identities=18% Similarity=0.233 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh--hhhh-hhhhHhHHH
Q 045448 436 KIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQTLQKLHSQSQHEQKALTLELQNKLQK--MKDM-EVCNHDLEE 512 (1756)
Q Consensus 436 KIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~~Le~l~sqsQeE~~~La~El~~~~~~--L~~l-E~~k~~l~~ 512 (1756)
.+......+......++.|-..+..|..-+..++.....++......++..+.|..|+....+. |++= -.....+..
T Consensus 276 ~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lek 355 (569)
T PRK04778 276 DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEK 355 (569)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHH
Confidence 3445556666777777788888888888888888888888888888888888888777665544 1110 111223334
Q ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 045448 513 GIEQVKRENQSLVELNSSSTITIQNLQNEIFNLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIMGLSRRYQALVEQVL 592 (1756)
Q Consensus 513 ~~~~~~ee~~~L~eln~sS~~~i~~L~~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln~~~~~l~E~~~ 592 (1756)
.+..+...+..+...-.........++.++..+.+.+..++.+.......-+.|..+....++.+..+......+...+.
T Consensus 356 eL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~ 435 (569)
T PRK04778 356 QLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLE 435 (569)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444432221111112224555555555555555555544444445555555555555555555555555555555
Q ss_pred hhCC--CccchHHHHHHHHHHHHHHHH
Q 045448 593 SVGL--NPEHLGSAVKELQEENSKLKE 617 (1756)
Q Consensus 593 s~~l--~~~s~~~~i~~Lq~en~kLkE 617 (1756)
..++ -|..+...+..+++++..|..
T Consensus 436 k~~lpgip~~y~~~~~~~~~~i~~l~~ 462 (569)
T PRK04778 436 KSNLPGLPEDYLEMFFEVSDEIEALAE 462 (569)
T ss_pred HcCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 5444 234344443444444333333
No 55
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=97.97 E-value=0.19 Score=66.47 Aligned_cols=556 Identities=21% Similarity=0.190 Sum_probs=273.9
Q ss_pred HHHHHHhhHHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHHHHHHHhhhhcHHHHHhHHHHHHHHHHHHH----HHHhhh
Q 045448 208 QSLQKFSSLERELNHAQKDAGGLDERASKADIEVKVLKEALIRLEAERDAGLLQYNHCLERISTLEKMII----QAQEDS 283 (1756)
Q Consensus 208 e~keKLsElEkEIse~QKel~EL~eRA~kAE~EIqsLKetLakLEsekdasllQyqq~lErLS~LE~~Ls----~AQeel 283 (1756)
+.......+.+++......--.+.+|+...+..++.|...|.....+ |.+...+-+...-.+.. .++..+
T Consensus 21 kae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree------~eq~i~~~~~~~s~e~e~~~~~le~~l 94 (769)
T PF05911_consen 21 KAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREE------QEQKIHEAVAKKSKEWEKIKSELEAKL 94 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHH------HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33333333333333333333355677777888899999999888777 33333332222222211 111222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q 045448 284 KGLNERASKAEIEAQKLKQELSRLENEKEAGLLQYKQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGL 363 (1756)
Q Consensus 284 k~L~ERa~kAE~Ele~LKqeL~~lEaEkEa~llQykQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~L 363 (1756)
..+..++.++..|...|... +..-...|.+|...-+.++..+..+..+++-++.|...|+-++.-+
T Consensus 95 ~e~~~~l~~~~~e~~~l~~~--------------l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~ 160 (769)
T PF05911_consen 95 AELSKRLAESAAENSALSKA--------------LQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVL 160 (769)
T ss_pred HHHHHHHHHHHhhhHHHHHH--------------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333333332222222 2333345555666666666666666666666666666665555444
Q ss_pred hh-------hH-------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH-------H
Q 045448 364 NE-------EK-------EAIAFRYDQCLDKIAQMESEIFNAQEHAKQ----------LNSEILMGAEKLRT-------S 412 (1756)
Q Consensus 364 ee-------EK-------eal~l~y~q~lekIseLE~ELseaeeev~r----------Ln~EiE~l~~kle~-------l 412 (1756)
.. |+ |++.-|+-.+..||..||.+=+.+..-+++ -+.+++.+-..--. .
T Consensus 161 ~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~~r~r~~~~ 240 (769)
T PF05911_consen 161 SKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESLGRDSGENRRRRSPS 240 (769)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHhccccccccCCCCCC
Confidence 42 22 355566667888888888876665544332 23333333110000 0
Q ss_pred H---------HHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH----------
Q 045448 413 E---------QQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQ---------- 473 (1756)
Q Consensus 413 E---------e~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~---------- 473 (1756)
. .....-...+.-|...+....+...++.+-|..+-.|+..-..+.-..+.|+.+.|+++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql~~~~~~~~e~~ 320 (769)
T PF05911_consen 241 RPSSPHDFSPQNPQKRSKESEFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQLKSSGQVSMELS 320 (769)
T ss_pred cccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 0 000011334556666777777777777778888888888888899999999999999991
Q ss_pred -----------HHHH------HHhhhHHHHHHHHHHHHH-HHHhh------hhhhhhhHhHHHHHHHHHHHHHHHHh---
Q 045448 474 -----------TLQK------LHSQSQHEQKALTLELQN-KLQKM------KDMEVCNHDLEEGIEQVKRENQSLVE--- 526 (1756)
Q Consensus 474 -----------~Le~------l~sqsQeE~~~La~El~~-~~~~L------~~lE~~k~~l~~~~~~~~ee~~~L~e--- 526 (1756)
..-. -+|.+-.=+..|.-|+.+ +..+. ...-.+..+|-+.|.+++. .-.+..
T Consensus 321 ~s~~~~~~~s~~s~se~~~dd~~s~s~SWAsaLiseldqfk~~k~~~~~~~~~~~~~~i~LMDDFlEmEk-LA~~s~~~~ 399 (769)
T PF05911_consen 321 SSQNTSNPPSLTSMSEDGNDDEGSCSDSWASALISELDQFKNEKVISRSSSKTISSSDIDLMDDFLEMEK-LAALSRDSS 399 (769)
T ss_pred cccCCCCCCchhcccccCCCCCCcccchhHHHHhchHHHhccccccccccccCCccccHHHHHHHHHHHH-HHhcCCCCC
Confidence 1000 122222233445556544 22222 1222335678888887543 222220
Q ss_pred ---hhcccHH-----------------H-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHH
Q 045448 527 ---LNSSSTI-----------------T-IQNLQNEIFNLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIMGLSRRYQ 585 (1756)
Q Consensus 527 ---ln~sS~~-----------------~-i~~L~~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln~~~~ 585 (1756)
...++.. . ...+++.|...-+-..++- .-+..+..++ ..|.....
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wLqsv~k~v-----------~~q~~~s~i~---~ILedI~~ 465 (769)
T PF05911_consen 400 SPSSCSSSEVDSDSSVTLESSSKRESVLESDKLSDRIPEWLQSVLKLV-----------LEQKEVSKIS---EILEDIEI 465 (769)
T ss_pred CCCCCCCccccccccccccccccccccccchhhcccccHHHHHHHHHH-----------HHHHHhhhHH---HHHHHHHH
Confidence 0110000 0 0122222222222222211 1122222222 22222122
Q ss_pred HHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHhHHHHHHHHHHHhHhhhcccccchhhhHH
Q 045448 586 ALVEQVLSVGLNPEHLGSAVKELQEENSKLKEVCKEQGDEKEVLHEKLKNMDNLLKKNAALEGSLSEMNIKLEGSGERVN 665 (1756)
Q Consensus 586 ~l~E~~~s~~l~~~s~~~~i~~Lq~en~kLkE~~~~~~~Ek~~l~ekl~~~e~L~~k~~~le~sls~~~~ele~lr~~vk 665 (1756)
++.....+..-...+... ......+.+.+..+.. ..-++.+...++-
T Consensus 466 al~~~~~~~~~~~~~~~~-------------------~~~~~sL~e~~~s~~~--------------~s~eL~~avskIs 512 (769)
T PF05911_consen 466 ALDSINNSSNCDDDSEEY-------------------ESMEASLVEESKSMIE--------------ISQELNVAVSKIS 512 (769)
T ss_pred HHHhhccccccccccchh-------------------hhhhhhHHHHHHHHHh--------------hcccHHHHHHhHH
Confidence 222222111111111110 0111111222211111 1111222222223
Q ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhhhhhHHHHHHHHh--------------HH
Q 045448 666 DLQKSCQFLREEKSSLVAEKATLLSQLQIMTENMQKLLEKNVTLEHSLAGANVELEGLRAKSKS--------------LE 731 (1756)
Q Consensus 666 ~Lqe~~~~Lke~~s~~~sEK~aL~~qlq~~~~~m~kLlEkns~LE~SLSd~n~ELe~lR~K~K~--------------lE 731 (1756)
+|-..-..+-..|..+.+.|+.|-..++..+- .+++....++||.|+.++.++++..+.. -.
T Consensus 513 Efv~~LekeVh~C~DLLsgkadLE~fieE~s~----tLdwIls~~~SLqDv~s~~sEIK~~f~~~ss~e~E~~~~dea~~ 588 (769)
T PF05911_consen 513 EFVLVLEKEVHVCQDLLSGKADLERFIEEFSL----TLDWILSNCFSLQDVSSMRSEIKKNFDGDSSSEAEINSEDEADT 588 (769)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH----HHHHHHHccchHHHHHHHHHHHHHhhhhcccccccccchHHHHH
Confidence 33333333444555555566666665533333 3333444466666655554444433322 33
Q ss_pred HHHHHHHhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHhHHhHhhhhhHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 045448 732 DFCRMLKNEKSNLLNERSTLVSQLEDVEKRLGNLERRFTKLEEKYADIEREKESTLSQVEELRYSLTNEQLERANYVQSS 811 (1756)
Q Consensus 732 Escq~l~~ekS~L~~Ek~~L~SQL~~~t~~l~~Le~k~t~LE~~~s~~~~Eke~~~~qv~~L~~~L~~e~e~~~~~~~s~ 811 (1756)
..+..+..+.-.+.++|..|-..|...+..++.+..++.++|.++..++.+++.+..--.-+-.+|...++ ...+.
T Consensus 589 ~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e----~~e~l 664 (769)
T PF05911_consen 589 SEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKE----SYESL 664 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 45566778888888999999999999999999999999999999999999998655444444445544433 33445
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 045448 812 ESRMVDLESLVHQLQEETTLRKKEFEEE 839 (1756)
Q Consensus 812 e~~l~~le~~i~~Lqee~~~~~~e~e~e 839 (1756)
+.++.+++..+..|+.+...++.+++.+
T Consensus 665 e~~~~~~e~E~~~l~~Ki~~Le~Ele~e 692 (769)
T PF05911_consen 665 ETRLKDLEAEAEELQSKISSLEEELEKE 692 (769)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555554433
No 56
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.94 E-value=0.019 Score=72.39 Aligned_cols=237 Identities=16% Similarity=0.228 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 382 AQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDE 461 (1756)
Q Consensus 382 seLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE 461 (1756)
.++...+.+++..+......+......+..++. ++.-+...+..|.+.+..+..+......++..+...+++|
T Consensus 123 ~elr~~~~~~~k~~~~~re~~~~~~~~l~~leA-------e~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~E 195 (546)
T KOG0977|consen 123 KELRKKLEKAEKERRGAREKLDDYLSRLSELEA-------EINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDE 195 (546)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhh-------HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 555555555555555555555554444444444 6666666666777777777777777777777777788888
Q ss_pred HHhHhhHHHHHHHHHHHHhhhH-------HHHHHHH-HHHH--HHHHhhhhhhhhhHhHHHHHHHHHHHHHH--------
Q 045448 462 QSRFAQVEVTLQTLQKLHSQSQ-------HEQKALT-LELQ--NKLQKMKDMEVCNHDLEEGIEQVKRENQS-------- 523 (1756)
Q Consensus 462 ~~K~~q~E~al~~Le~l~sqsQ-------eE~~~La-~El~--~~~~~L~~lE~~k~~l~~~~~~~~ee~~~-------- 523 (1756)
..-+...+..+++|-.-..-.+ .|..+.+ .+.. ....==.+|..+.+++...+......++.
T Consensus 196 tllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~ 275 (546)
T KOG0977|consen 196 TLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKR 275 (546)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 8777777666665544333222 2222222 2220 00000012233333333333222222211
Q ss_pred -HHhhh----------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 045448 524 -LVELN----------SSSTITIQNLQNEIFNLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIMGLSRRYQALVEQVL 592 (1756)
Q Consensus 524 -L~eln----------~sS~~~i~~L~~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln~~~~~l~E~~~ 592 (1756)
+++++ ....+.++.+...|+.|...+-.||. .+.+|...|..++-....-.+
T Consensus 276 kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~-------~n~~L~~~I~dL~~ql~e~~r---------- 338 (546)
T KOG0977|consen 276 KIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELES-------RNSALEKRIEDLEYQLDEDQR---------- 338 (546)
T ss_pred HHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccc-------cChhHHHHHHHHHhhhhhhhh----------
Confidence 22222 12334555555555555555555554 555665555555544444333
Q ss_pred hhCCCccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHhHHHHHHHHHHHh
Q 045448 593 SVGLNPEHLGSAVKELQEENSKLKEVCKEQGDEKEVLHEKLKNMDNLLKKNAALEGS 649 (1756)
Q Consensus 593 s~~l~~~s~~~~i~~Lq~en~kLkE~~~~~~~Ek~~l~ekl~~~e~L~~k~~~le~s 649 (1756)
.|...+-+...++-++.+.|..+..|...|......++.-...|..|.+-
T Consensus 339 -------~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRkLLeg 388 (546)
T KOG0977|consen 339 -------SFEQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAYRKLLEG 388 (546)
T ss_pred -------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHHHHHhcc
Confidence 45566677778888999999999999999988888888888888888654
No 57
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.92 E-value=0.078 Score=62.57 Aligned_cols=86 Identities=26% Similarity=0.333 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHHHHHHHhhhhcHHHHHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 045448 216 LERELNHAQKDAGGLDERASKADIEVKVLKEALIRLEAERDAGLLQYNHCLERISTLEKMIIQAQEDSKGLNERASKAEI 295 (1756)
Q Consensus 216 lEkEIse~QKel~EL~eRA~kAE~EIqsLKetLakLEsekdasllQyqq~lErLS~LE~~Ls~AQeelk~L~ERa~kAE~ 295 (1756)
.+.++..+...+..+.......+.++..+...+..+..+ |.........++..+..+..++....-.....+.
T Consensus 52 ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k-------~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~ 124 (312)
T PF00038_consen 52 YEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRK-------YEEELAERKDLEEELESLRKDLDEETLARVDLEN 124 (312)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHH
Confidence 455555555555555555555556666666666666655 6666666666666666666666655555555666
Q ss_pred HHHHHHHHHHHHH
Q 045448 296 EAQKLKQELSRLE 308 (1756)
Q Consensus 296 Ele~LKqeL~~lE 308 (1756)
.++.|+++|.-+.
T Consensus 125 ~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 125 QIQSLKEELEFLK 137 (312)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665443
No 58
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.91 E-value=0.19 Score=64.69 Aligned_cols=135 Identities=17% Similarity=0.210 Sum_probs=73.7
Q ss_pred HHHHHHHhHHHHHHHHHHHhhHHhhhhhhhhhhHHHHHHHHhHHHHHHHHHhhhhhhhhhHHHHHhhHHHHHHHHHHHHH
Q 045448 688 LLSQLQIMTENMQKLLEKNVTLEHSLAGANVELEGLRAKSKSLEDFCRMLKNEKSNLLNERSTLVSQLEDVEKRLGNLER 767 (1756)
Q Consensus 688 L~~qlq~~~~~m~kLlEkns~LE~SLSd~n~ELe~lR~K~K~lEEscq~l~~ekS~L~~Ek~~L~SQL~~~t~~l~~Le~ 767 (1756)
.-.++-...+++.-++-+-+.+=+..-|+|...+++..-.+.+..- .-....+|+-+=--++.+....-..+.
T Consensus 382 ~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~~~-------l~~~tk~reqlk~lV~~~~k~~~e~e~ 454 (716)
T KOG4593|consen 382 EETKLKELHETLARRLQKRALLLTQERDLNRAILGSKDDEKRLAEE-------LPQVTKEREQLKGLVQKVDKHSLEMEA 454 (716)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH-------hHHHHHHHHHHHHHHHHHHHhhHhhhh
Confidence 3344444556667777777777777788888887765544444322 222223332222222222222222222
Q ss_pred HHhHHhHhhhhhHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhh---HHHHHhHHHHHHHHHHHH
Q 045448 768 RFTKLEEKYADIEREKESTLSQVEELRYSLTNEQLERANYVQSS---ESRMVDLESLVHQLQEET 829 (1756)
Q Consensus 768 k~t~LE~~~s~~~~Eke~~~~qv~~L~~~L~~e~e~~~~~~~s~---e~~l~~le~~i~~Lqee~ 829 (1756)
-...+-.....-....+.+..++++|+++|......+.-+-.-. -..+.++.+.+..|+++.
T Consensus 455 s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En 519 (716)
T KOG4593|consen 455 SMEELYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELLEEEN 519 (716)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 23333333334456666777888888887766655544433322 356788888888887665
No 59
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.90 E-value=0.22 Score=65.13 Aligned_cols=134 Identities=19% Similarity=0.234 Sum_probs=66.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHHHHHHHhhhhc
Q 045448 179 DKADSELETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLDERASKADIEVKVLKEALIRLEAERDAG 258 (1756)
Q Consensus 179 ~eaEeEIdeLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~eRA~kAE~EIqsLKetLakLEsekdas 258 (1756)
+..+..+..+-.++..+.+.+++.. ......+...+.++..++-++.+..-.+.++-.+.+.|+..++ +++++
T Consensus 329 d~~~~~~~~~~~e~~~~~~~l~~~~---~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~ela----ql~a~ 401 (980)
T KOG0980|consen 329 DPRELQIEQLSREVAQLKAQLENLK---EEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELA----QLLAS 401 (980)
T ss_pred ChhhHHHHHHHHHHHHHhhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 4556666666666666555555443 3444444444555555554444333333333333333333333 33333
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 259 LLQYNHCLERISTLEKMIIQAQEDSKGLNERASKAEIEAQKLKQELSRLENEKEAGLLQYKQCLEMIYALESKISLAEEN 338 (1756)
Q Consensus 259 llQyqq~lErLS~LE~~Ls~AQeelk~L~ERa~kAE~Ele~LKqeL~~lEaEkEa~llQykQ~lEkIseLEkKIs~lEe~ 338 (1756)
-.|.+++...+..++++. ...+..++.++..+..+..+.-..+ ++.++..+++...+..
T Consensus 402 r~q~eka~~~~ee~e~~~--------------l~~e~ry~klkek~t~l~~~h~~lL-------~K~~di~kQle~~~~s 460 (980)
T KOG0980|consen 402 RTQLEKAQVLVEEAENKA--------------LAAENRYEKLKEKYTELRQEHADLL-------RKYDDIQKQLESAEQS 460 (980)
T ss_pred HHHHHHHHHHHHhHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Confidence 334444443344444433 3445566677777777776544444 5555555555555544
Q ss_pred Hh
Q 045448 339 AG 340 (1756)
Q Consensus 339 v~ 340 (1756)
+.
T Consensus 461 ~~ 462 (980)
T KOG0980|consen 461 ID 462 (980)
T ss_pred HH
Confidence 44
No 60
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.89 E-value=0.063 Score=67.98 Aligned_cols=95 Identities=18% Similarity=0.235 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045448 481 QSQHEQKALTLELQNKLQKMKDMEVCNHDLEEGIEQVKRENQSLVELNSSSTITIQNLQNEIFNLKEMKEKLEKEIALQE 560 (1756)
Q Consensus 481 qsQeE~~~La~El~~~~~~L~~lE~~k~~l~~~~~~~~ee~~~L~eln~sS~~~i~~L~~Ei~~lke~~~~LE~Ev~~~v 560 (1756)
..+||+..+-..+.....+|.+||+.+..|..++..+.-.... -..+....+-....+|-.+++.-..|--|+..=+
T Consensus 293 ~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e---~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~Ll 369 (546)
T KOG0977|consen 293 YAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDE---DQRSFEQALNDKDAEIAKMREECQQLSVELQKLL 369 (546)
T ss_pred HHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhh---hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4679999999999999999999999999999999876654433 3345566777788888888888888888888888
Q ss_pred hhhHHHHHHHHHHHHHHh
Q 045448 561 DKSNALQLEVRHLKEEIM 578 (1756)
Q Consensus 561 ~~~~~LQ~Ei~~~KeE~~ 578 (1756)
+-+.+|+-||..-..=+.
T Consensus 370 D~ki~Ld~EI~~YRkLLe 387 (546)
T KOG0977|consen 370 DTKISLDAEIAAYRKLLE 387 (546)
T ss_pred chHhHHHhHHHHHHHHhc
Confidence 999999999987554433
No 61
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.87 E-value=0.32 Score=65.81 Aligned_cols=56 Identities=27% Similarity=0.313 Sum_probs=32.0
Q ss_pred hhhhhhHHHHHHHHhHHHHHHHHHhhhhhhhhhHHHH-----HhhHHHHHHHHHHHHHHHh
Q 045448 715 GANVELEGLRAKSKSLEDFCRMLKNEKSNLLNERSTL-----VSQLEDVEKRLGNLERRFT 770 (1756)
Q Consensus 715 d~n~ELe~lR~K~K~lEEscq~l~~ekS~L~~Ek~~L-----~SQL~~~t~~l~~Le~k~t 770 (1756)
..+.+++.+|.+.+.+......+....+.+......+ ..+++.....+.+..+++.
T Consensus 583 ~~~~~l~~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~e~~~~~~~l~~~~~~l~ 643 (908)
T COG0419 583 TRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLN 643 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3347777777777766666556666666665555555 4444444444444444444
No 62
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.84 E-value=0.3 Score=64.79 Aligned_cols=312 Identities=20% Similarity=0.190 Sum_probs=182.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhhhhhHHHHHHHHhHHHHHHHHHhhhhhhhhhHHHHHhh
Q 045448 675 REEKSSLVAEKATLLSQLQIMTENMQKLLEKNVTLEHSLAGANVELEGLRAKSKSLEDFCRMLKNEKSNLLNERSTLVSQ 754 (1756)
Q Consensus 675 ke~~s~~~sEK~aL~~qlq~~~~~m~kLlEkns~LE~SLSd~n~ELe~lR~K~K~lEEscq~l~~ekS~L~~Ek~~L~SQ 754 (1756)
..++..+.+|=+++-.+| +.++....|...|...|--..-+|.-+-....--+ + +-+..+.-.+..+=..+=+|
T Consensus 683 ~~~~~~~q~el~~le~eL----~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e-~-~~~~~~~~~~~e~v~e~~~~ 756 (1174)
T KOG0933|consen 683 QKELRAIQKELEALEREL----KSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNE-F-HKLLDDLKELLEEVEESEQQ 756 (1174)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-H-hhHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666 33444444444444444433333333332222111 1 11222222233333344445
Q ss_pred HHHHHHHHHHHHHHHhHHhHhhhhhHHHHhHhH-----------HHHHHH----------HHHHHHHHHHHHhhhhhhHH
Q 045448 755 LEDVEKRLGNLERRFTKLEEKYADIEREKESTL-----------SQVEEL----------RYSLTNEQLERANYVQSSES 813 (1756)
Q Consensus 755 L~~~t~~l~~Le~k~t~LE~~~s~~~~Eke~~~-----------~qv~~L----------~~~L~~e~e~~~~~~~s~e~ 813 (1756)
+......+.+-..+...||.+..+...++++-+ .++.+- -..|..|-+++..-..+++.
T Consensus 757 Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~ 836 (1174)
T KOG0933|consen 757 IKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQ 836 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555566666666666666655555444433 222111 23378888899999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHhhhhhHHHHHHHhhhhh
Q 045448 814 RMVDLESLVHQLQEETTLRKKEFEEELDKAVKAQVEIFILQKFIKDLEEKNLSLLIECQKHVEASKLSDKLIAELESENL 893 (1756)
Q Consensus 814 ~l~~le~~i~~Lqee~~~~~~e~e~e~~k~~~aq~ei~ilq~~l~d~eekn~sLl~ecqk~~e~~k~se~~iseLE~e~~ 893 (1756)
++..++++++.|..+.-.+.-..-....-...+|-++-...+.+-|.-.-=-.++..|++........+.-+-.|++|..
T Consensus 837 ~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~ 916 (1174)
T KOG0933|consen 837 QLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVT 916 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHH
Confidence 99999999999998888887765333333344777777777777766655566789999999999889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHhccCCCCCCccccccCccchhhhHhhHHHhh---hhhhchhhhHHHHHHHH
Q 045448 894 EQQVETEFLLDELEKLRT---GIYQVFRVLQFDPANWHEGKIEQGHIPIPQIVEDIEDLK---SSVLRNEDEKQQLVIEN 967 (1756)
Q Consensus 894 ~~q~e~~~l~~~~~~lr~---gi~qv~~~l~~~~~~~~~d~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~q~~~~E~ 967 (1756)
..+.+.....-++++|.. ||... .=.|..+++.-|-=.. ..+..-+++..|+ .++..+=+-+-
T Consensus 917 ~~~~e~~~~~k~v~~l~~k~~wi~~e--k~~fgk~gt~yDf~~~---~p~~are~l~~Lq~k~~~l~k~vn~~~------ 985 (1174)
T KOG0933|consen 917 KLESEKANARKEVEKLLKKHEWIGDE--KRLFGKKGTDYDFESY---DPHEAREELKKLQEKKEKLEKTVNPKN------ 985 (1174)
T ss_pred HhhhhHHHHHHHHHHHHHhccchhHH--HHhhcCCCCccccccC---CHhHHHHHHHHhhHHHHHHHhhcCHHH------
Confidence 999999999999988875 44421 1122333333221111 1233333344333 33333333332
Q ss_pred HHHHHHHHHhhhhchhhhhhhhhhHHHHHHHHHHHhhhh
Q 045448 968 TVLLTLIGQLRLDGAEQESGKKIFEQELMSRTEQHMMLQ 1006 (1756)
Q Consensus 968 svl~t~L~q~~~e~~~l~~ek~~l~~e~~~~~~q~~~Lq 1006 (1756)
..+|.----..++|.+-+++++.+....-.=...|-
T Consensus 986 ---m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~lD 1021 (1174)
T KOG0933|consen 986 ---MDMLERAEEKEAALKTKKEIIEKDKSKIKKTIEKLD 1021 (1174)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344555566778888888888877665544444443
No 63
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.83 E-value=0.066 Score=63.14 Aligned_cols=237 Identities=19% Similarity=0.245 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhHhHHHHHHHHHHHhHhhhcccccchhhhHHHHHHHhhHHHHHHhh----hhHH
Q 045448 609 QEENSKLKEVCKEQGDEKEVLHEKLKNMDNLLKKNAALEGSLSEMNIKLEGSGERVNDLQKSCQFLREEKSS----LVAE 684 (1756)
Q Consensus 609 q~en~kLkE~~~~~~~Ek~~l~ekl~~~e~L~~k~~~le~sls~~~~ele~lr~~vk~Lqe~~~~Lke~~s~----~~sE 684 (1756)
..++..|.-.+.+...+..-+..++.. .......|+..+..+--+++...-...+|+.....|++++.- |..|
T Consensus 67 ~~eka~l~~e~~~l~~e~~~~r~k~e~---e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeE 143 (312)
T PF00038_consen 67 SKEKARLELEIDNLKEELEDLRRKYEE---ELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEE 143 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHhhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhh
Confidence 333344444444444443333333321 233445555555555555666566666666666666666554 3345
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhhhhhHHHHHHHHhHHHHHHHHHhhhhhhhhhHHHHHhhHHHHHHHHHH
Q 045448 685 KATLLSQLQIMTENMQKLLEKNVTLEHSLAGANVELEGLRAKSKSLEDFCRMLKNEKSNLLNERSTLVSQLEDVEKRLGN 764 (1756)
Q Consensus 685 K~aL~~qlq~~~~~m~kLlEkns~LE~SLSd~n~ELe~lR~K~K~lEEscq~l~~ekS~L~~Ek~~L~SQL~~~t~~l~~ 764 (1756)
-..|..+++ .+-.++-=.-...-|...|-++.++.+..=.+.+ ++.-..+...-..+...-. .-...+..
T Consensus 144 i~~L~~~~~-~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~--~e~e~~y~~k~~~l~~~~~-------~~~~~~~~ 213 (312)
T PF00038_consen 144 IEELREQIQ-SSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNR--EELEEWYQSKLEELRQQSE-------KSSEELES 213 (312)
T ss_dssp HHTTSTT-----------------HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH-------HHHHHHHH
T ss_pred hhhhhhccc-cccceeecccccccchhhhhhHHHHHHHHHhhhh--hhhhhhccccccccccccc-------ccccccch
Confidence 555555553 1122211112234466666666666665544444 1222223333333333333 33344444
Q ss_pred HHHHHhHHhHhhhhhHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 765 LERRFTKLEEKYADIEREKESTLSQVEELRYSLTNEQLERANYVQSSESRMVDLESLVHQLQEETTLRKKEFEEELDKAV 844 (1756)
Q Consensus 765 Le~k~t~LE~~~s~~~~Eke~~~~qv~~L~~~L~~e~e~~~~~~~s~e~~l~~le~~i~~Lqee~~~~~~e~e~e~~k~~ 844 (1756)
+...++.+-..+.++..+++++..+...|...|..=...+...+...+..++.++..+..|+.++.....+|++=++-=+
T Consensus 214 ~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~ 293 (312)
T PF00038_consen 214 AKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVKL 293 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555566666677778888888899999999999999999888778
Q ss_pred HHHHHHHHHHHHHH
Q 045448 845 KAQVEIFILQKFIK 858 (1756)
Q Consensus 845 ~aq~ei~ilq~~l~ 858 (1756)
...+||-.-.+.|.
T Consensus 294 ~Ld~EIatYR~LLE 307 (312)
T PF00038_consen 294 ALDAEIATYRKLLE 307 (312)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHh
Confidence 88888888777764
No 64
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.83 E-value=0.22 Score=62.88 Aligned_cols=294 Identities=15% Similarity=0.184 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHHHHHHHhhhhcHHHHHh
Q 045448 188 LKKTLAEIEAEKEAILMQYQQ---SLQKFSSLERELNHAQKDAGGLDERASKADIEVKVLKEALIRLEAERDAGLLQYNH 264 (1756)
Q Consensus 188 LQkkI~aLQTEKE~LesQyEe---~keKLsElEkEIse~QKel~EL~eRA~kAE~EIqsLKetLakLEsekdasllQyqq 264 (1756)
+-.+|..+++.-..+..+|++ ...+...+++....+|.+++.+..-......-.+.....|..+.++.+.--.+...
T Consensus 233 i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~ 312 (581)
T KOG0995|consen 233 IANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEK 312 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444432 22233345555666666666665555544444555555555555443333333555
Q ss_pred HHHHHHHHHHHHHH---HHhhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHH
Q 045448 265 CLERISTLEKMIIQ---AQEDSK-------GLNERASKAEIEAQKLKQELSRLENEKEAGL-------LQYKQCLEMIYA 327 (1756)
Q Consensus 265 ~lErLS~LE~~Ls~---AQeelk-------~L~ERa~kAE~Ele~LKqeL~~lEaEkEa~l-------lQykQ~lEkIse 327 (1756)
.......|.+.+.. .-.++. .+...+.++..+...|.+++-.++.+.+... .+|+++..+|.-
T Consensus 313 lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l 392 (581)
T KOG0995|consen 313 LQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKL 392 (581)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555554431 111111 2333344555555555555444333322222 112222222211
Q ss_pred HHHHHHHHHHHHh-------------hHHHHHH-HHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045448 328 LESKISLAEENAG-------------MLNEQTE-KAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQE 393 (1756)
Q Consensus 328 LEkKIs~lEe~v~-------------slnqrie-rle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaee 393 (1756)
- .++..+. .++.-+. .+....++...++..-+.++..+-....+....|.++-..+..++.
T Consensus 393 ---~--~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~ 467 (581)
T KOG0995|consen 393 ---G--IAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIEL 467 (581)
T ss_pred ---H--HHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111111 0000000 1222222223333333333334444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-hhH
Q 045448 394 HAKQLNSEILMGAEKLRTSEQQC----VLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDEQSRF-AQV 468 (1756)
Q Consensus 394 ev~rLn~EiE~l~~kle~lEe~~----~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~-~q~ 468 (1756)
++..+....+.....-+....+| ..|++++..+.. .+...+....+.+.+.+-+++++-.....++.|+ .+.
T Consensus 468 el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l---~~~~~m~~a~~~v~s~e~el~~~~~~~~eer~ki~~ql 544 (581)
T KOG0995|consen 468 ELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKL---VLNTSMKEAEELVKSIELELDRMVATGEEERQKIAKQL 544 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433333322222222 234444444433 3455677777788888888888888888888777 665
Q ss_pred HHHHHHHHHHHhhhHHHHHHH
Q 045448 469 EVTLQTLQKLHSQSQHEQKAL 489 (1756)
Q Consensus 469 E~al~~Le~l~sqsQeE~~~L 489 (1756)
.+-+.+.=+.+-..|..+..+
T Consensus 545 ~~~i~~i~~~k~~iqs~le~~ 565 (581)
T KOG0995|consen 545 FAVIDQISDFKVSIQSSLENL 565 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555544444444443333
No 65
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.82 E-value=0.26 Score=63.56 Aligned_cols=314 Identities=17% Similarity=0.150 Sum_probs=156.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHHHHHHHhhhhcHHHH
Q 045448 183 SELETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLDERASKADIEVKVLKEALIRLEAERDAGLLQY 262 (1756)
Q Consensus 183 eEIdeLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~eRA~kAE~EIqsLKetLakLEsekdasllQy 262 (1756)
.+...++....-+..++-..++|+-.+..++..+|.+.+.+|..+..+++....+++++..+..++-.++.+--+--...
T Consensus 85 qetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eI 164 (1265)
T KOG0976|consen 85 QETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDI 164 (1265)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHH
Confidence 34444555555555555566666666666666666666666666666666666666666666555555543311111111
Q ss_pred HhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----------HHHHHHHHHHHHHHH
Q 045448 263 NHCLERISTLEKMIIQAQEDSKGLNERASKAEIEAQKLKQELSRLENEKEAGLLQ----------YKQCLEMIYALESKI 332 (1756)
Q Consensus 263 qq~lErLS~LE~~Ls~AQeelk~L~ERa~kAE~Ele~LKqeL~~lEaEkEa~llQ----------ykQ~lEkIseLEkKI 332 (1756)
....+ ++..-...++..+.++..+-.+....+...+..+.+ ..+...+.+.+..+|
T Consensus 165 f~~~~--------------~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~v 230 (1265)
T KOG0976|consen 165 FMIGE--------------DLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKV 230 (1265)
T ss_pred HHHHH--------------HHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 11111 111111111122222222211111111111111111 112222333333333
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 333 SLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTS 412 (1756)
Q Consensus 333 s~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~l 412 (1756)
-.-..+++++.+-+.-++.....++...-.|+.-.+-+...-.+..-+=+.|..++++-++.|+.++++++.+.+-.-.+
T Consensus 231 l~ev~QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a 310 (1265)
T KOG0976|consen 231 LKEVMQLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRA 310 (1265)
T ss_pred HHHHHHHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444433333333433333333333334444445555667777888888888888888777765443322
Q ss_pred HHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhhhHHHHHHHHHH
Q 045448 413 EQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQTLQKLHSQSQHEQKALTLE 492 (1756)
Q Consensus 413 Ee~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~~Le~l~sqsQeE~~~La~E 492 (1756)
-. .-+..-.=+..+.-.+.-.+..+...|.+.+-.++.+-....+=--++-.+++..+.++...-.-.+|+++|..+
T Consensus 311 ~g---dseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l 387 (1265)
T KOG0976|consen 311 DG---DSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLEL 387 (1265)
T ss_pred hc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 22 112233334444455555566666666666665666555555545566667777777777777777788888777
Q ss_pred HHHHHHhhhhhhhhhHhHHHH
Q 045448 493 LQNKLQKMKDMEVCNHDLEEG 513 (1756)
Q Consensus 493 l~~~~~~L~~lE~~k~~l~~~ 513 (1756)
-....+.+..+.++...+.-.
T Consensus 388 ~aerqeQidelKn~if~~e~~ 408 (1265)
T KOG0976|consen 388 QAERQEQIDELKNHIFRLEQG 408 (1265)
T ss_pred HHHHHHHHHHHHHhhhhhhhc
Confidence 777777777766666655433
No 66
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.79 E-value=0.28 Score=62.86 Aligned_cols=584 Identities=19% Similarity=0.210 Sum_probs=309.0
Q ss_pred hhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHH
Q 045448 363 LNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQ 442 (1756)
Q Consensus 363 LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~ler 442 (1756)
-+.+++-..--|.....-|..|--.+....-.+..-+.++- .+++.--.++..|+ ..+..++.....+++.+.-
T Consensus 174 yE~EREET~qly~~l~~niekMi~aFEeLR~qAEn~r~EM~---fKlKE~~~k~~~le---eey~~E~n~kEkqvs~L~~ 247 (786)
T PF05483_consen 174 YEYEREETRQLYMDLNENIEKMIAAFEELRVQAENDRQEMH---FKLKEDYEKFEDLE---EEYKKEVNDKEKQVSLLQT 247 (786)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHH---HHHHHHhhhHHHHHHHHHH
Confidence 34455555555555555555554444333222222222221 12222222222233 3456777777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHHHH
Q 045448 443 ELSQKQRELENLQASLQDEQSRFAQVEVTLQTLQKLHSQSQHEQKALTLELQNKLQKMKDMEVCNHDLEEGIEQVKRENQ 522 (1756)
Q Consensus 443 EL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~~Le~l~sqsQeE~~~La~El~~~~~~L~~lE~~k~~l~~~~~~~~ee~~ 522 (1756)
.+..|-+.+.-+...++.=..+.-+-+.+-....-+..+|+.+++.|.++|+.-..-|...++....|+..++.+...+-
T Consensus 248 q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~~~ 327 (786)
T PF05483_consen 248 QLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESESTQKALEEDLQQATKTLI 327 (786)
T ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999888888999999999999999998777788888888888888887777666
Q ss_pred HHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCCCccch
Q 045448 523 SLVELNSSSTITIQNLQNEIFNLKEMKEKLEKEIALQE-DKSNALQLEVRHLKEEIMGLSRRYQALVEQVLSVGLNPEHL 601 (1756)
Q Consensus 523 ~L~eln~sS~~~i~~L~~Ei~~lke~~~~LE~Ev~~~v-~~~~~LQ~Ei~~~KeE~~~Ln~~~~~l~E~~~s~~l~~~s~ 601 (1756)
-|++-.......+ ..-+...-..=.++..-| .-...|.-|.+++++--+.|
T Consensus 328 qlt~eKe~~~Ee~-------nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~l--------------------- 379 (786)
T PF05483_consen 328 QLTEEKEAQMEEL-------NKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQL--------------------- 379 (786)
T ss_pred HHHHhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---------------------
Confidence 6655543222221 111111111111222222 12234445555554422222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHhHHHHHHHHHHHhHhhhcccccchhhhHHHHHHHhhHHHHHHhhh
Q 045448 602 GSAVKELQEENSKLKEVCKEQGDEKEVLHEKLKNMDNLLKKNAALEGSLSEMNIKLEGSGERVNDLQKSCQFLREEKSSL 681 (1756)
Q Consensus 602 ~~~i~~Lq~en~kLkE~~~~~~~Ek~~l~ekl~~~e~L~~k~~~le~sls~~~~ele~lr~~vk~Lqe~~~~Lke~~s~~ 681 (1756)
.....+||..+..|.++.+-... =...++++.+.+.+++.+.+.-. .|..-.-.|+.....|.......
T Consensus 380 k~l~~eLqkks~eleEmtk~k~~----ke~eleeL~~~L~e~qkll~ekk-------~~eki~E~lq~~eqel~~llq~~ 448 (786)
T PF05483_consen 380 KILTMELQKKSSELEEMTKQKNN----KEVELEELKKILAEKQKLLDEKK-------QFEKIAEELQGTEQELTGLLQIR 448 (786)
T ss_pred HHHHHHHHHhhHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 22446777777777766532211 01112222222223322221111 12222333444444444443333
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhhhhhHHHHHHHHhHHHHHHHHHhhhhhhhhhHHHHHhhHHHHHHH
Q 045448 682 VAEKATLLSQLQIMTENMQKLLEKNVTLEHSLAGANVELEGLRAKSKSLEDFCRMLKNEKSNLLNERSTLVSQLEDVEKR 761 (1756)
Q Consensus 682 ~sEK~aL~~qlq~~~~~m~kLlEkns~LE~SLSd~n~ELe~lR~K~K~lEEscq~l~~ekS~L~~Ek~~L~SQL~~~t~~ 761 (1756)
..+=--|-.+|-.+ .+.+--.=...-+++++|+.-+.|-..|-..|.-|.-||-.++-|.+....-|....+.
T Consensus 449 ekev~dLe~~l~~~-------~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qed 521 (786)
T PF05483_consen 449 EKEVHDLEIQLTTI-------KESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQED 521 (786)
T ss_pred hhHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 32222222333222 22233333445677889998888888888999999999999999999888888777766
Q ss_pred HHHHHHHHhHHhHhhhhhHHHHhHhHHHHHHHHHHHHHHHHHHHh-------hhhhhHHHHHhHHHHHHHHHHHHHHHHH
Q 045448 762 LGNLERRFTKLEEKYADIEREKESTLSQVEELRYSLTNEQLERAN-------YVQSSESRMVDLESLVHQLQEETTLRKK 834 (1756)
Q Consensus 762 l~~Le~k~t~LE~~~s~~~~Eke~~~~qv~~L~~~L~~e~e~~~~-------~~~s~e~~l~~le~~i~~Lqee~~~~~~ 834 (1756)
|.+-..+--.+=.-...+....-.+++.+..++..+....++..+ -..+.+......++++..|..++..+++
T Consensus 522 i~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrK 601 (786)
T PF05483_consen 522 INNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRK 601 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 655433322222222222222222233333333333333333332 2334555566777777777777766655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHhhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 045448 835 EFEEELDKAVKAQVEIFILQKFIKDLEEKNLSLLIECQKHVEASKLSDKLIAELESENLEQQVETEFLLDELEKLRTGIY 914 (1756)
Q Consensus 835 e~e~e~~k~~~aq~ei~ilq~~l~d~eekn~sLl~ecqk~~e~~k~se~~iseLE~e~~~~q~e~~~l~~~~~~lr~gi~ 914 (1756)
..+ --.+||.++..-|=+|=-..=+-..-+.+.+..|+.|+.|.-..+-..+ ...+.++..|.
T Consensus 602 qvE--------------nk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~e---E~~~~~~keie 664 (786)
T PF05483_consen 602 QVE--------------NKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHE---EETDKYQKEIE 664 (786)
T ss_pred HHH--------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHH
Confidence 433 1256677777766665433333333344556666666554332221111 11222222221
Q ss_pred HHHHHhccCCCCCCccccccCccchhhhHhhHHHhhhhhhc-------hhhhHHHHHHHHHHHHHHHHHhhhhchhhhhh
Q 045448 915 QVFRVLQFDPANWHEGKIEQGHIPIPQIVEDIEDLKSSVLR-------NEDEKQQLVIENTVLLTLIGQLRLDGAEQESG 987 (1756)
Q Consensus 915 qv~~~l~~~~~~~~~d~~~~~~~~~~~i~~~~~~~~~~~~~-------~~~~~q~~~~E~svl~t~L~q~~~e~~~l~~e 987 (1756)
.--+.-...+++++-++-+.++ +.=.=||-+.| ++++++-.+.....+.-|
T Consensus 665 -------------------~K~~~e~~L~~EveK~k~~a~EAvK~q~EtdlrCQhKIAe---MVALMEKHK~qYDkiVEE 722 (786)
T PF05483_consen 665 -------------------SKSISEEELLGEVEKAKLTADEAVKLQEETDLRCQHKIAE---MVALMEKHKHQYDKIVEE 722 (786)
T ss_pred -------------------HhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHH
Confidence 1112233444445444443332 23344666655 788888888777777666
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhHHHHHHhHHHhhHHHHHHHHHHhhHHHHhhHHHHHHHhhhHHHHhhh
Q 045448 988 KKIFEQELMSRTEQHMMLQKDKDELLEMNKQLMLEEAYLTLQEENSKLLEEDRLLYERFLGLKKEISAL 1056 (1756)
Q Consensus 988 k~~l~~e~~~~~~q~~~Lq~~~~~lle~n~ql~~~~s~~~lq~e~~~~~~e~~sL~~~~~~l~e~~~~l 1056 (1756)
|++==.....+-.+. --.+.+|.-|.+.+--+..||-..+.--++++-.|
T Consensus 723 kDaEL~~~k~KE~E~-------------------~s~k~sLE~ELs~lk~el~slK~QLk~e~~eKE~l 772 (786)
T PF05483_consen 723 KDAELGLYKKKEQEQ-------------------SSHKASLELELSNLKNELSSLKKQLKTERTEKEKL 772 (786)
T ss_pred HHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 654222222221111 12344566677777777777777766666655544
No 67
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.74 E-value=0.021 Score=72.14 Aligned_cols=74 Identities=16% Similarity=0.245 Sum_probs=33.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHHHHHHHh
Q 045448 178 EDKADSELETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLDERASKADIEVKVLKEALIRLEAE 254 (1756)
Q Consensus 178 ~~eaEeEIdeLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~eRA~kAE~EIqsLKetLakLEse 254 (1756)
..+++.+++.++.++..++.+++.+...+......+ ...+..+++.+..+...+.....++..+++.+..+...
T Consensus 176 ~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~---~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~ 249 (562)
T PHA02562 176 IRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKN---GENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMD 249 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344555555555555555555444433333332221 12344444444444444444455555555555555433
No 68
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.73 E-value=0.012 Score=74.36 Aligned_cols=183 Identities=15% Similarity=0.149 Sum_probs=81.7
Q ss_pred HHHHhhhhcHHHHHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHH
Q 045448 250 RLEAERDAGLLQYNHCLERISTLEKMIIQAQEDSKGLNERASKAEIEAQKLKQELSRLENEKEAGLL--QYKQCLEMIYA 327 (1756)
Q Consensus 250 kLEsekdasllQyqq~lErLS~LE~~Ls~AQeelk~L~ERa~kAE~Ele~LKqeL~~lEaEkEa~ll--QykQ~lEkIse 327 (1756)
.++.+.+....++.....++..++..+..+..++..+.+.+.+++.++..++..+..++....-... .+-.|...+.+
T Consensus 217 ~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~ 296 (562)
T PHA02562 217 RKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISE 296 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCC
Confidence 3333333333335555555555555555554444444444444555555555555444443222210 12223333333
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 328 LESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAE 407 (1756)
Q Consensus 328 LEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~ 407 (1756)
....+..+...+..+. .++..+...+..+++ ...+|.+...++..++..+......+..+..+...+..
T Consensus 297 ~~~~~~~l~d~i~~l~-------~~l~~l~~~i~~~~~----~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ 365 (562)
T PHA02562 297 GPDRITKIKDKLKELQ-------HSLEKLDTAIDELEE----IMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKA 365 (562)
T ss_pred cHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333322 223333333322222 11245556666666666666666666666666666666
Q ss_pred HHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 045448 408 KLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQE 443 (1756)
Q Consensus 408 kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerE 443 (1756)
++..++.....++.++..+..++..+...+....++
T Consensus 366 ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke 401 (562)
T PHA02562 366 AIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE 401 (562)
T ss_pred HHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665555543334444444444444444444433333
No 69
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.71 E-value=0.36 Score=63.25 Aligned_cols=115 Identities=15% Similarity=0.213 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh--------CCCccchHHHH
Q 045448 534 TIQNLQNEIFNLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIMGLSRRYQALVEQVLSV--------GLNPEHLGSAV 605 (1756)
Q Consensus 534 ~i~~L~~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln~~~~~l~E~~~s~--------~l~~~s~~~~i 605 (1756)
.-..|..||..++--..-|...+.--+..-=++++-|-.+++=...||.+.+-+.+++.|+ +++++++-
T Consensus 491 le~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Sseees~q~~s~~~et~d--- 567 (1243)
T KOG0971|consen 491 LELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSEEESQQPPSVDPETFD--- 567 (1243)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCchhhhH---
Confidence 4456777888776666666665555555666777888888888888888877777777654 12222221
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHhH------HHHHHHHHHHhHhhhcccccch
Q 045448 606 KELQEENSKLKEVCKEQGDEKEVLHEKLKNMDN------LLKKNAALEGSLSEMNIKLEGS 660 (1756)
Q Consensus 606 ~~Lq~en~kLkE~~~~~~~Ek~~l~ekl~~~e~------L~~k~~~le~sls~~~~ele~l 660 (1756)
-|.....-|--. .++-..+..|+- +.-=-+.|=+++...|-|.||+
T Consensus 568 --yk~~fa~skaya-------raie~QlrqiEv~~a~rh~~~l~AFmPdsFlrrGGdhDsv 619 (1243)
T KOG0971|consen 568 --YKIKFAESKAYA-------RAIEMQLRQIEVAQANRHMSLLTAFMPDSFLRRGGDHDSV 619 (1243)
T ss_pred --HHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhCcHhhccCCCCccee
Confidence 122222222222 233444444442 1222456678888889888876
No 70
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.70 E-value=0.38 Score=61.94 Aligned_cols=390 Identities=15% Similarity=0.196 Sum_probs=174.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHHHHHHHhhh
Q 045448 177 AEDKADSELETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLDERASKADIEVKVLKEALIRLEAERD 256 (1756)
Q Consensus 177 r~~eaEeEIdeLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~eRA~kAE~EIqsLKetLakLEsekd 256 (1756)
.+..++..++.+..++..+..++..+..+-+..+..+..+...+..+.+.+....- .....+..+.+.|..++..
T Consensus 102 ~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~---~~G~a~~~Le~~L~~ie~~-- 176 (560)
T PF06160_consen 102 AIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSF---SYGPAIEELEKQLENIEEE-- 176 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhchhHHHHHHHHHHHHHH--
Confidence 35566777777777777777777777777777777777777777777776654332 2222344555555555444
Q ss_pred hcHHHHHhHHH--HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHH-----HHHHHHHH
Q 045448 257 AGLLQYNHCLE--RISTLEKMIIQAQEDSKGLNERASKAEIEAQKLKQ----ELSRLENEKEAGLLQ-----YKQCLEMI 325 (1756)
Q Consensus 257 asllQyqq~lE--rLS~LE~~Ls~AQeelk~L~ERa~kAE~Ele~LKq----eL~~lEaEkEa~llQ-----ykQ~lEkI 325 (1756)
+.++..+.. ........+..+..+...+...+...=.=+..++. .|..+.........+ .....+.|
T Consensus 177 --F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i 254 (560)
T PF06160_consen 177 --FSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEI 254 (560)
T ss_pred --HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Confidence 222222222 11112222222222222222222211111111221 112222111111110 11122344
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 326 YALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMG 405 (1756)
Q Consensus 326 seLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l 405 (1756)
..+.+++..+...+..+ .++.++...+.+..+|..|=.--+.=+.-+....+.+..+..-+.++....+.+..+++.+
T Consensus 255 ~~i~~~l~~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v 332 (560)
T PF06160_consen 255 EQIEEQLEEALALLKNL--ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERV 332 (560)
T ss_pred HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443333222 2222333333333333222221122222333444445555555555555555555555544
Q ss_pred HHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhhhHHH
Q 045448 406 AEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQTLQKLHSQSQHE 485 (1756)
Q Consensus 406 ~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~~Le~l~sqsQeE 485 (1756)
...-.-- +.-.+.......++......+..+...+.+...-+.+....+..+.....+...+
T Consensus 333 ~~sY~L~------------------~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~ 394 (560)
T PF06160_consen 333 SQSYTLN------------------HNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEE 394 (560)
T ss_pred HHhcCCC------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3221000 0111223334445555555555556666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHH--hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 045448 486 QKALTLELQNKLQKMKDMEVCNHDLEEGIEQVKRENQSLV--ELNSSSTITIQNLQNEIFNLKEMKEKLEKEIALQEDKS 563 (1756)
Q Consensus 486 ~~~La~El~~~~~~L~~lE~~k~~l~~~~~~~~ee~~~L~--eln~sS~~~i~~L~~Ei~~lke~~~~LE~Ev~~~v~~~ 563 (1756)
+..+...+......-.+-......+...+..++..+...| -+..+-...+..-.++|..+...+...--.|..--...
T Consensus 395 q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~~l 474 (560)
T PF06160_consen 395 QEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQVPINMDEVNKQL 474 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHH
Confidence 5555555544444444444444445555555555444322 22222223444445555555554444333333333344
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 045448 564 NALQLEVRHLKEEIMGLSRRYQALVEQVLSV 594 (1756)
Q Consensus 564 ~~LQ~Ei~~~KeE~~~Ln~~~~~l~E~~~s~ 594 (1756)
...+..+..+.+...++-. +-.|.|++---
T Consensus 475 ~~a~~~v~~L~~~t~~li~-~A~L~E~~iQY 504 (560)
T PF06160_consen 475 EEAEDDVETLEEKTEELID-NATLAEQLIQY 504 (560)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4555666666666555543 34455555433
No 71
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.69 E-value=8.7e-06 Score=105.51 Aligned_cols=90 Identities=20% Similarity=0.400 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHhhhcccHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 045448 489 LTLELQNKLQKMKDMEVCNHDLEEGIEQVKRENQSLVELNSSSTITIQN---LQNEIFNLKEMKEKLEKEIALQEDKSNA 565 (1756)
Q Consensus 489 La~El~~~~~~L~~lE~~k~~l~~~~~~~~ee~~~L~eln~sS~~~i~~---L~~Ei~~lke~~~~LE~Ev~~~v~~~~~ 565 (1756)
|..++..-.++|.+ ..++..++..+++.|..|.+.+..-...++. +...+..++..+..|+.+..-.-.....
T Consensus 313 lE~~ve~YKkKLed----~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~ 388 (713)
T PF05622_consen 313 LENEVEKYKKKLED----LEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADK 388 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555 4455555555556665555554443333332 4555566666666666555544445555
Q ss_pred HHHHHHHHHHHHhhhhH
Q 045448 566 LQLEVRHLKEEIMGLSR 582 (1756)
Q Consensus 566 LQ~Ei~~~KeE~~~Ln~ 582 (1756)
|+.++..+++.+..|.+
T Consensus 389 l~~e~~~L~ek~~~l~~ 405 (713)
T PF05622_consen 389 LEFENKQLEEKLEALEE 405 (713)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555554443
No 72
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.66 E-value=0.45 Score=61.55 Aligned_cols=143 Identities=13% Similarity=0.135 Sum_probs=87.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 045448 550 EKLEKEIALQEDKSNALQLEVRHLKEEIMGLSRRYQALVEQVLSVGLNPEHLGSAVKELQEENSKLKEVCKEQGDEKEVL 629 (1756)
Q Consensus 550 ~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln~~~~~l~E~~~s~~l~~~s~~~~i~~Lq~en~kLkE~~~~~~~Ek~~l 629 (1756)
.-|+.|+-.+-.++-+++.++-..+--..++..+...|.-+-...--|+.+++-..+....+...|.+.-++.......+
T Consensus 319 kylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidel 398 (1265)
T KOG0976|consen 319 KYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDEL 398 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677777788887776665555555444444433333333444555555666666666666666666655555
Q ss_pred HHHHHhHhHHHHHHHHHHHhHhhhcccccchhhhHHHHHHHhhHHHHHHhhhhHHHHHHHHHH
Q 045448 630 HEKLKNMDNLLKKNAALEGSLSEMNIKLEGSGERVNDLQKSCQFLREEKSSLVAEKATLLSQL 692 (1756)
Q Consensus 630 ~ekl~~~e~L~~k~~~le~sls~~~~ele~lr~~vk~Lqe~~~~Lke~~s~~~sEK~aL~~ql 692 (1756)
.-.+=.++.....|.+-.+.|+.+--.+|-++--.-.+.-.|+..+..++....=..--++|-
T Consensus 399 Kn~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQc 461 (1265)
T KOG0976|consen 399 KNHIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQC 461 (1265)
T ss_pred HHhhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHH
Confidence 555555555556677777777777777777777777777777777666665444344444444
No 73
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.15 Score=65.67 Aligned_cols=180 Identities=16% Similarity=0.171 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 045448 289 RASKAEIEAQKLKQELSRLENEKEAGLLQYKQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKE 368 (1756)
Q Consensus 289 Ra~kAE~Ele~LKqeL~~lEaEkEa~llQykQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKe 368 (1756)
+..+....+--++...+.++.+.++...+.+++..+|.+..-.|....+.+...+.+.+....+++.|+++|..+++-.-
T Consensus 424 Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~ 503 (1118)
T KOG1029|consen 424 QKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQ 503 (1118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445666667777777777777888999999999999999999999999999999999999999844443222
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 369 AIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQ 448 (1756)
Q Consensus 369 al~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKq 448 (1756)
-++-..+...++|...-. ...--+.....+......-+.-|..+...+.++..|.++-.+.|....-.+.+.+
T Consensus 504 ~l~~Ekq~l~~qlkq~q~-------a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk 576 (1118)
T KOG1029|consen 504 KLAPEKQELNHQLKQKQS-------AHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELK 576 (1118)
T ss_pred hhhhHHHHHHHHHHHhhh-------hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 222222222222222211 1111111111111111111112223444556666666666666666666666666
Q ss_pred HHHHHHHH----HHHHHHHhHhhHHHHHHHH
Q 045448 449 RELENLQA----SLQDEQSRFAQVEVTLQTL 475 (1756)
Q Consensus 449 eE~e~Lqs----~IqdE~~K~~q~E~al~~L 475 (1756)
+.+...+- +..++..+++++|.+.+.|
T Consensus 577 ~~~~~q~lake~~yk~e~d~~ke~et~~lel 607 (1118)
T KOG1029|consen 577 EDVNSQQLAKEELYKNERDKLKEAETKALEL 607 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65554432 3334555555555554443
No 74
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.65 E-value=0.26 Score=58.40 Aligned_cols=190 Identities=17% Similarity=0.216 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHH---------
Q 045448 323 EMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQE--------- 393 (1756)
Q Consensus 323 EkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaee--------- 393 (1756)
.++..|..+-..+-..+..-.+--+|+++|+...+..| .|++-++.+|-..=..+|--+..+..
T Consensus 63 ~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRL-------aaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkm 135 (305)
T PF14915_consen 63 GQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRL-------AAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKM 135 (305)
T ss_pred hhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHh
Confidence 33333333333333333333334457777777777777 78888888888877888888888777
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHH
Q 045448 394 --HAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVT 471 (1756)
Q Consensus 394 --ev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~a 471 (1756)
++..++...+.+-+++..++..+-.|+.++.....-+..-.--+....+.|++.+-.+.-+..+.++|..|....=..
T Consensus 136 n~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~K 215 (305)
T PF14915_consen 136 NSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGK 215 (305)
T ss_pred cchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344555555666666666666565666666666666666566677888999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHH
Q 045448 472 LQTLQKLHSQSQHEQKALTLELQNKLQKMKDMEVCNHDLEEGIEQVKR 519 (1756)
Q Consensus 472 l~~Le~l~sqsQeE~~~La~El~~~~~~L~~lE~~k~~l~~~~~~~~e 519 (1756)
.-+++--.+|+|.|---|-+-|...+++-..-+...-+.+..|+.+-.
T Consensus 216 qes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~ 263 (305)
T PF14915_consen 216 QESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVK 263 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999999998888888888887766655555566666654433
No 75
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.64 E-value=0.49 Score=61.53 Aligned_cols=95 Identities=21% Similarity=0.237 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhHhHHHHHHHHHHHhHhhhcccccchhhhHHHHHH-------HhhHHHHHHh
Q 045448 607 ELQEENSKLKEVCKEQGDEKEVLHEKLKNMDNLLKKNAALEGSLSEMNIKLEGSGERVNDLQK-------SCQFLREEKS 679 (1756)
Q Consensus 607 ~Lq~en~kLkE~~~~~~~Ek~~l~ekl~~~e~L~~k~~~le~sls~~~~ele~lr~~vk~Lqe-------~~~~Lke~~s 679 (1756)
.|+.-..||..-+-..-.|++-|.+.++.++.+ +--+--+-|..++.|.=-+. ....=-+.++
T Consensus 411 aLq~amekLq~~f~~~~~e~adl~e~~e~le~~----------~~ql~~et~ti~eyi~ly~~qr~~~k~r~~e~~~~i~ 480 (617)
T PF15070_consen 411 ALQEAMEKLQSRFMDLMEEKADLKERVEKLEHR----------FIQLSGETDTIGEYITLYQSQRAVLKQRHQEKEEYIS 480 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH----------HHHhccCccchhhhhccccccccccchhHHHHHHHHH
Confidence 344455566666666666666665555443332 22233455666666633222 2222223466
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHH-HHHhhHHh
Q 045448 680 SLVAEKATLLSQLQIMTENMQKLL-EKNVTLEH 711 (1756)
Q Consensus 680 ~~~sEK~aL~~qlq~~~~~m~kLl-Ekns~LE~ 711 (1756)
.++.+|..+-.+|..+.+-+-.|+ +.|..-.+
T Consensus 481 ~l~~~~e~mk~kl~elq~lv~~l~~~~~e~~~k 513 (617)
T PF15070_consen 481 RLAQDREEMKVKLLELQELVLRLVGDHNEWHSK 513 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhh
Confidence 677777777777766555555555 33433333
No 76
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.64 E-value=0.63 Score=62.65 Aligned_cols=75 Identities=27% Similarity=0.215 Sum_probs=48.1
Q ss_pred HHHHHHHHHhHHhHhhhhh----HHHHhHhHHHHHHH---HHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHH
Q 045448 761 RLGNLERRFTKLEEKYADI----EREKESTLSQVEEL---RYSLTNEQLERANYVQSSESRMVDLESLVHQLQEETTLRK 833 (1756)
Q Consensus 761 ~l~~Le~k~t~LE~~~s~~----~~Eke~~~~qv~~L---~~~L~~e~e~~~~~~~s~e~~l~~le~~i~~Lqee~~~~~ 833 (1756)
.+...+.+...++....+- ..+-....-+++.| ...|..+...+....+..+..+.+++.++..+.+.+..++
T Consensus 826 ~l~~~E~~~~~~e~~~~e~~~ka~~~cp~~~~ei~~~~~~~~eik~ei~rlk~~i~~~ee~~~~~~e~~~~~~~~~~~~~ 905 (1074)
T KOG0250|consen 826 ELKQKEVEKVNLEEPRAEEDQKARTECPEEGIEIEALGKTVAEIKREIKRLKRQIQMCEESLGELEELHRGLHEARKELK 905 (1074)
T ss_pred HHHHHHHHHHhhhcchhhhCchhhhhCccccchhhcccchHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhhh
Confidence 3444444444444443332 22222222344444 5678888888888889999999999999999888877776
Q ss_pred HH
Q 045448 834 KE 835 (1756)
Q Consensus 834 ~e 835 (1756)
++
T Consensus 906 k~ 907 (1074)
T KOG0250|consen 906 KE 907 (1074)
T ss_pred hh
Confidence 65
No 77
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.54 E-value=0.16 Score=66.56 Aligned_cols=153 Identities=20% Similarity=0.267 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHHHHHHHhhhhc
Q 045448 186 ETLKKTLAEIEAEKEAILMQYQQSLQKFSS-------LERELNHAQKDAGGLDERASKADIEVKVLKEALIRLEAERDAG 258 (1756)
Q Consensus 186 deLQkkI~aLQTEKE~LesQyEe~keKLsE-------lEkEIse~QKel~EL~eRA~kAE~EIqsLKetLakLEsekdas 258 (1756)
.+|..++..|.+++...+..-++++..+.. +-.+|+.++.+...++.++..+....+.=+.+|..|+.+
T Consensus 421 ~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkr---- 496 (697)
T PF09726_consen 421 SRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKR---- 496 (697)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 344444444444444444444444444332 334566666666666666666666666666666666665
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 259 LLQYNHCLERISTLEKMIIQAQEDSKGLNERASKAEIEAQKLKQELSRLENEK-EAGLLQYKQCLEMIYALESKISLAEE 337 (1756)
Q Consensus 259 llQyqq~lErLS~LE~~Ls~AQeelk~L~ERa~kAE~Ele~LKqeL~~lEaEk-Ea~llQykQ~lEkIseLEkKIs~lEe 337 (1756)
+......-..+|.++..-...-+.-.+.+.+ .+..-.+.+ +. -..|..++-+|+.++..++.
T Consensus 497 ---L~eE~~~R~~lEkQL~eErk~r~~ee~~aar----------~~~~~~~~r~e~----~e~~r~r~~~lE~E~~~lr~ 559 (697)
T PF09726_consen 497 ---LAEERRQRASLEKQLQEERKARKEEEEKAAR----------ALAQAQATRQEC----AESCRQRRRQLESELKKLRR 559 (697)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh----------ccccchhccchh----HHHHHHHHHHHHHHHHHHHH
Confidence 4445444445555544211111110000000 000000000 00 12466677777777777777
Q ss_pred HHhhHHHHHHHHHHHHHHHHHH
Q 045448 338 NAGMLNEQTEKAETEVKALKQA 359 (1756)
Q Consensus 338 ~v~slnqrierle~Ei~~LkqE 359 (1756)
++..-.+++..++.++..|+.-
T Consensus 560 elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 560 ELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777555543
No 78
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.49 E-value=2.3e-05 Score=101.64 Aligned_cols=177 Identities=23% Similarity=0.320 Sum_probs=0.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 479 HSQSQHEQKALTLELQNKLQKMKDMEVCNHDLEEGIEQVKRENQSLVELNSSSTITIQNLQNEIFNLKEMKEKLEKEIAL 558 (1756)
Q Consensus 479 ~sqsQeE~~~La~El~~~~~~L~~lE~~k~~l~~~~~~~~ee~~~L~eln~sS~~~i~~L~~Ei~~lke~~~~LE~Ev~~ 558 (1756)
+..++..++.|-.|+..+...+.+++.....++..+.++..++..|..... ..+.|.||++-+++.-.++.
T Consensus 241 ~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~----~a~~LrDElD~lR~~a~r~~----- 311 (713)
T PF05622_consen 241 LADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAR----EARALRDELDELREKADRAD----- 311 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhHHHHHHHHHHHH-----
Confidence 444555555555555555555555555556666666667777776655443 77888888888887544433
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHhH
Q 045448 559 QEDKSNALQLEVRHLKEEIMGLSRRYQALVEQVLSVGLNPEHLGSAVKELQEENSKLKEVCKEQGDEKEVLHEKLKNMDN 638 (1756)
Q Consensus 559 ~v~~~~~LQ~Ei~~~KeE~~~Ln~~~~~l~E~~~s~~l~~~s~~~~i~~Lq~en~kLkE~~~~~~~Ek~~l~ekl~~~e~ 638 (1756)
.|+.++...|+-+.+++- +..-|+.|++.|..|-+.+..++++......
T Consensus 312 ------klE~~ve~YKkKLed~~~------------------lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~------- 360 (713)
T PF05622_consen 312 ------KLENEVEKYKKKLEDLED------------------LKRQVKELEEDNAVLLETKAMLEEELKKARA------- 360 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------HHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------
Confidence 244444444444333321 2334455555555555555555544433222
Q ss_pred HHHHHHHHHHhHhhhcccccchhhhHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHh
Q 045448 639 LLKKNAALEGSLSEMNIKLEGSGERVNDLQKSCQFLREEKSSLVAEKATLLSQLQIM 695 (1756)
Q Consensus 639 L~~k~~~le~sls~~~~ele~lr~~vk~Lqe~~~~Lke~~s~~~sEK~aL~~qlq~~ 695 (1756)
+......+..++.++...+..-...+..|+-.+..|++.+..+..||+.|....+.+
T Consensus 361 ~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L 417 (713)
T PF05622_consen 361 LKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSL 417 (713)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222344455555555555555666666666666666666666666666655443
No 79
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=97.48 E-value=0.42 Score=60.93 Aligned_cols=33 Identities=12% Similarity=0.196 Sum_probs=23.8
Q ss_pred HHHHHHHHhhhhhhhhhHhHHHHHHHHHHHHHH
Q 045448 491 LELQNKLQKMKDMEVCNHDLEEGIEQVKRENQS 523 (1756)
Q Consensus 491 ~El~~~~~~L~~lE~~k~~l~~~~~~~~ee~~~ 523 (1756)
.-|-.|+..|..|-+.|..+.-.+..+...++.
T Consensus 399 ~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~~ 431 (511)
T PF09787_consen 399 ESLIQKQTQLESLGSEKNALRLQLERLETQLKE 431 (511)
T ss_pred HHHHHHHHHHHHHHhhhhhccccHHHHHHHHHh
Confidence 344467777888888888888777777766664
No 80
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.46 E-value=0.73 Score=58.98 Aligned_cols=165 Identities=21% Similarity=0.257 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 045448 388 IFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQ-VEAESLVQKIAIKDQELSQKQRELENLQASLQDEQSRFA 466 (1756)
Q Consensus 388 Lseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq-~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~ 466 (1756)
+.-+-.++.+-+..+..++.+...+..+...-++....-+ -.++..-..+..+++++...-+++.++++....+..++.
T Consensus 237 v~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~ 316 (629)
T KOG0963|consen 237 VSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHK 316 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443322222221110 235555666777888888888888888888888776665
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHH
Q 045448 467 QVEVTLQTLQKLHSQSQHEQKALTLELQNKLQKMKDMEVCNHDLEEGIEQVKRENQSLVELNSS-STITIQNLQNEIFNL 545 (1756)
Q Consensus 467 q~E~al~~Le~l~sqsQeE~~~La~El~~~~~~L~~lE~~k~~l~~~~~~~~ee~~~L~eln~s-S~~~i~~L~~Ei~~l 545 (1756)
..+..|-.++..+...|++|++.-+. .+.+.+|+.++..|..+.+. |...--.-
T Consensus 317 -----------------~qI~~le~~l~~~~~~leel~~kL~~-~sDYeeIK~ELsiLk~ief~~se~a~~~~------- 371 (629)
T KOG0963|consen 317 -----------------AQISALEKELKAKISELEELKEKLNS-RSDYEEIKKELSILKAIEFGDSEEANDED------- 371 (629)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHhh-hccHHHHHHHHHHHHHhhcCCcccccccc-------
Confidence 22333444555666666665543333 37889999999999999887 32211100
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 045448 546 KEMKEKLEKEIALQEDKSNALQLEVRHLKEEIMGLS 581 (1756)
Q Consensus 546 ke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln 581 (1756)
++-..+|+ +-+..+.-||.+...++--+.++.
T Consensus 372 -~~~~~les---lLl~knr~lq~e~a~Lr~~n~~~~ 403 (629)
T KOG0963|consen 372 -ETAKTLES---LLLEKNRKLQNENASLRVANSGLS 403 (629)
T ss_pred -cccchHHH---HHHHHHhhhhHHHHHHhccccccc
Confidence 22222222 223455566666666655554444
No 81
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.46 E-value=0.78 Score=59.18 Aligned_cols=221 Identities=19% Similarity=0.305 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh--hhhhhh-hhHhHHHHHHH
Q 045448 440 KDQELSQKQRELENLQASLQDEQSRFAQVEVTLQTLQKLHSQSQHEQKALTLELQNKLQK--MKDMEV-CNHDLEEGIEQ 516 (1756)
Q Consensus 440 lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~~Le~l~sqsQeE~~~La~El~~~~~~--L~~lE~-~k~~l~~~~~~ 516 (1756)
....+.....+++.|-..++.|..=+..++..+..+...........+.|..|+..-.+- |.+-|. .-..+...+..
T Consensus 276 ~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~ 355 (560)
T PF06160_consen 276 VEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKE 355 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 344444555555556666666666666666666666665555555555555544432221 221111 12233334433
Q ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCC
Q 045448 517 VKRENQSLVELNSSSTITIQNLQNEIFNLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIMGLSRRYQALVEQVLSVGL 596 (1756)
Q Consensus 517 ~~ee~~~L~eln~sS~~~i~~L~~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln~~~~~l~E~~~s~~l 596 (1756)
+......+...=......-..+...+..+.+.+..++.+.....+....|..+=...++.+..+....+.+.-.|...+|
T Consensus 356 l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nL 435 (560)
T PF06160_consen 356 LEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNL 435 (560)
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33333332222222222233334444444444444555444445566666666666667776676666666666666666
Q ss_pred --CccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHhHHHHHHHHHHHhHhhhcccccchhhhHHHHHHHhhHH
Q 045448 597 --NPEHLGSAVKELQEENSKLKEVCKEQGDEKEVLHEKLKNMDNLLKKNAALEGSLSEMNIKLEGSGERVNDLQKSCQFL 674 (1756)
Q Consensus 597 --~~~s~~~~i~~Lq~en~kLkE~~~~~~~Ek~~l~ekl~~~e~L~~k~~~le~sls~~~~ele~lr~~vk~Lqe~~~~L 674 (1756)
-|.++... +.....+...+...|+..-++|+.+...+...++.-..|
T Consensus 436 PGlp~~y~~~-------------------------------~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L 484 (560)
T PF06160_consen 436 PGLPEDYLDY-------------------------------FFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETL 484 (560)
T ss_pred CCCCHHHHHH-------------------------------HHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHH
Confidence 23433333 334445555566666666666666666666666666666
Q ss_pred HHHHhhhhHHHHHHHHHH
Q 045448 675 REEKSSLVAEKATLLSQL 692 (1756)
Q Consensus 675 ke~~s~~~sEK~aL~~ql 692 (1756)
.+....+. +.+.|++++
T Consensus 485 ~~~t~~li-~~A~L~E~~ 501 (560)
T PF06160_consen 485 EEKTEELI-DNATLAEQL 501 (560)
T ss_pred HHHHHHHH-HHHHHHHHH
Confidence 66666555 456666666
No 82
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=97.35 E-value=1.5 Score=60.32 Aligned_cols=46 Identities=7% Similarity=-0.163 Sum_probs=27.7
Q ss_pred hcccccchhhhH-HHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhHHH
Q 045448 653 MNIKLEGSGERV-NDLQKSCQFLREEKSSLVAEKATLLSQLQIMTEN 698 (1756)
Q Consensus 653 ~~~ele~lr~~v-k~Lqe~~~~Lke~~s~~~sEK~aL~~qlq~~~~~ 698 (1756)
.+.=|=|-|.-- .+..+-|++|...+...-++...+...+....+.
T Consensus 674 ~~~CplC~r~f~~eee~ef~~~l~~~i~s~p~~~~~~~~~l~k~~k~ 720 (1294)
T KOG0962|consen 674 SHCCPLCQRSFTTEEEVEFIKKLESKIDSAPDKLEEAEVELSKEEKI 720 (1294)
T ss_pred ccCCCccCCccchHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 333344444322 2346677788888777777777777777555444
No 83
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.31 E-value=1.5 Score=59.11 Aligned_cols=65 Identities=20% Similarity=0.248 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHHHHHH
Q 045448 186 ETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLDERASKADIEVKVLKEALIRLE 252 (1756)
Q Consensus 186 deLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~eRA~kAE~EIqsLKetLakLE 252 (1756)
..++.+...++++ -..-++-.....+...-.+++..+.++..+..+.+..+.++...+....+.-
T Consensus 204 ~~lkde~~~~q~e--~~L~qLfhvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~ 268 (1141)
T KOG0018|consen 204 QRLKDEKGKAQKE--QFLWELFHVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIR 268 (1141)
T ss_pred HHHHHHHHHHHHH--HHHHHHhhhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 4677777777776 3344445666777777888888888888888888888888888875554443
No 84
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.30 E-value=1 Score=57.24 Aligned_cols=127 Identities=20% Similarity=0.239 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcHHHHHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 045448 237 ADIEVKVLKEALIRLEAERDAGLLQYNHCLERISTLEKMIIQAQEDSKGLNERASKAEIEAQKLKQELSRLENEKEAGLL 316 (1756)
Q Consensus 237 AE~EIqsLKetLakLEsekdasllQyqq~lErLS~LE~~Ls~AQeelk~L~ERa~kAE~Ele~LKqeL~~lEaEkEa~ll 316 (1756)
..+++..|+.+...|.+.-. .....-.++..+++....++.|+..+..-+...+..-+..-..|+.+..+.+..-.
T Consensus 233 i~~~ie~l~~~n~~l~e~i~----e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEe 308 (581)
T KOG0995|consen 233 IANEIEDLKKTNRELEEMIN----EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEE 308 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666655511 12222235566666666666666655544444444444444555555554444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 045448 317 QYKQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIA 371 (1756)
Q Consensus 317 QykQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~ 371 (1756)
+..-+...+++|.+.|..- .=-.+.++++..|...|..+|..++.+.|.+.
T Consensus 309 E~e~lq~~~d~Lk~~Ie~Q----~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~ 359 (581)
T KOG0995|consen 309 EIEKLQKENDELKKQIELQ----GISGEDVERMNLERNKLKRELNKIQSELDRLS 359 (581)
T ss_pred HHHHHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556677776665432 11123455555555555555555555555443
No 85
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.29 E-value=1.1 Score=57.47 Aligned_cols=282 Identities=20% Similarity=0.156 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--------------HHhhhhhhHHHHHHhhHHHHHHHHHHHHHHH
Q 045448 324 MIYALESKISLAEENAGMLNEQTEKAETEVKALKQ--------------ALTGLNEEKEAIAFRYDQCLDKIAQMESEIF 389 (1756)
Q Consensus 324 kIseLEkKIs~lEe~v~slnqrierle~Ei~~Lkq--------------EL~~LeeEKeal~l~y~q~lekIseLE~ELs 389 (1756)
.|-.|..++..+++-+......+..+..|-..|+. .|-+++.++...--.|..+.-.+..|+....
T Consensus 475 iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~ 554 (961)
T KOG4673|consen 475 IIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQAL 554 (961)
T ss_pred HHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34444444444444444444444444444333322 2556666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 045448 390 NAQEHAKQLNSEILM-GAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDEQSRFAQV 468 (1756)
Q Consensus 390 eaeeev~rLn~EiE~-l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~ 468 (1756)
-.+.....+...... -..+...+.+ +-+.|-..+..|+++++..++-+--+. +.+.-.|.+=..++..|
T Consensus 555 a~qat~d~a~~Dlqk~nrlkQdear~-------~~~~lvqqv~dLR~~L~~~Eq~aarrE---d~~R~Ei~~LqrRlqaa 624 (961)
T KOG4673|consen 555 AEQATNDEARSDLQKENRLKQDEARE-------RESMLVQQVEDLRQTLSKKEQQAARRE---DMFRGEIEDLQRRLQAA 624 (961)
T ss_pred HHHHhhhhhhhhHHHHhhhhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 665555555442211 1111222333 334444455555555554444332111 12222333333344445
Q ss_pred HHHHHHHHHHHhh-----------hHHHHHHHH----HHHHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHhhhcccHH
Q 045448 469 EVTLQTLQKLHSQ-----------SQHEQKALT----LELQNKLQKMKDMEVCNHDLEEGIEQVKRENQSLVELNSSSTI 533 (1756)
Q Consensus 469 E~al~~Le~l~sq-----------sQeE~~~La----~El~~~~~~L~~lE~~k~~l~~~~~~~~ee~~~L~eln~sS~~ 533 (1756)
|-.|..|-..... +|.=+..-+ .+=.....+|+|-++.-.-...+-+..+.+.-.++=.-.|+.+
T Consensus 625 E~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~v~~eqgekqElL~~~~~l~s~~~ 704 (961)
T KOG4673|consen 625 ERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWEREERSLNERLSDSQTLLRINVLEEQGEKQELLSLNFSLPSSPI 704 (961)
T ss_pred HHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHHHHHHHhcCCCcchh
Confidence 5556554433322 222222222 1223345556654443333333334444555444444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCCCccchHHHHHHHHHHHH
Q 045448 534 TIQNLQNEIFNLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIMGLSRRYQALVEQVLSVGLNPEHLGSAVKELQEENS 613 (1756)
Q Consensus 534 ~i~~L~~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln~~~~~l~E~~~s~~l~~~s~~~~i~~Lq~en~ 613 (1756)
..-=|..|-..|...+++-.. ....+.++....++|++.|..+|-.+..+.+....- .=..||....
T Consensus 705 q~sllraE~~~l~~~le~e~n-------r~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~------~~q~lq~~ll 771 (961)
T KOG4673|consen 705 QLSLLRAEQGQLSKSLEKERN-------RAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRK------HKQELQEVLL 771 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhhHHHH
Confidence 555555555555554444443 334455555555566666666665555555444321 1145566666
Q ss_pred HHHHHHHHhhhhHHH
Q 045448 614 KLKEVCKEQGDEKEV 628 (1756)
Q Consensus 614 kLkE~~~~~~~Ek~~ 628 (1756)
..+-+-+..+-+++.
T Consensus 772 ~ve~~~k~~e~~~~~ 786 (961)
T KOG4673|consen 772 HVELIQKDLEREKAS 786 (961)
T ss_pred HHHHHHHHhhhCHHH
Confidence 666666665555554
No 86
>PRK11637 AmiB activator; Provisional
Probab=97.25 E-value=0.32 Score=60.35 Aligned_cols=74 Identities=14% Similarity=0.247 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHHHHHHHh
Q 045448 181 ADSELETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLDERASKADIEVKVLKEALIRLEAE 254 (1756)
Q Consensus 181 aEeEIdeLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~eRA~kAE~EIqsLKetLakLEse 254 (1756)
+..+++.++.+|..++.++..+..+.......+..++.+|...+..+..+...+...+.++..++..|..++.+
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~ 118 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQ 118 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666655555555555555555555555555555555555555555555555555555444
No 87
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.19 E-value=0.17 Score=66.54 Aligned_cols=80 Identities=18% Similarity=0.219 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 384 MESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDEQS 463 (1756)
Q Consensus 384 LE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~ 463 (1756)
|...+......=..++.++..+..+-+.++. .+..|....+.-++.|+.++++|.+-+.-...+...+.+|..
T Consensus 444 LRsqis~l~~~Er~lk~eL~qlr~ene~Lq~-------Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk 516 (697)
T PF09726_consen 444 LRSQISSLTNNERSLKSELSQLRQENEQLQN-------KLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERK 516 (697)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344555555555555444444 777777777788888888888888888888888888888886
Q ss_pred hHhhHHH
Q 045448 464 RFAQVEV 470 (1756)
Q Consensus 464 K~~q~E~ 470 (1756)
.++.+|.
T Consensus 517 ~r~~ee~ 523 (697)
T PF09726_consen 517 ARKEEEE 523 (697)
T ss_pred HHhHHHH
Confidence 6555443
No 88
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.18 E-value=0.53 Score=57.13 Aligned_cols=154 Identities=15% Similarity=0.221 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 321 CLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNS 400 (1756)
Q Consensus 321 ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~ 400 (1756)
..+....+...+.+++.....++.+..++.++...|-.+-..|+++++++.-..+++---.+.|..+....-....++..
T Consensus 121 v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ 200 (499)
T COG4372 121 VRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQ 200 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777888888888999999999999999999999999999998888777765566666665555555444433
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q 045448 401 EILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQTLQKL 478 (1756)
Q Consensus 401 EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~~Le~l 478 (1756)
+-..+...-+.+ .-+++++...+.-.+...++|+..+..++.+-.++-.--..|..-..++...|.+..-||.-
T Consensus 201 ~~~~la~r~~a~----q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqe 274 (499)
T COG4372 201 EAQNLATRANAA----QARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQE 274 (499)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333322 23555666666666666666666666666555544444445555555555556555555443
No 89
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=97.17 E-value=1.6 Score=56.75 Aligned_cols=352 Identities=20% Similarity=0.188 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 319 KQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQL 398 (1756)
Q Consensus 319 kQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rL 398 (1756)
..+..+.-.|++.+..+++........+..+..+.+.|++.+..-.++-++-+-.-.++..=|-+.-- .+.....-
T Consensus 165 ~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p----~~~~~~~w 240 (739)
T PF07111_consen 165 ASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVP----PEVHSQAW 240 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCC----cccccHHH
Confidence 34456666666666666666666666677777788888888866666655554444444333322110 00001112
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhHhhHHH
Q 045448 399 NSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELE--------NLQASLQDEQSRFAQVEV 470 (1756)
Q Consensus 399 n~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e--------~Lqs~IqdE~~K~~q~E~ 470 (1756)
+.+-+.+..-++.+++.-.-|-...+-|++.+.++..-+..++.+|..|---.+ ..++++..=+.|..--..
T Consensus 241 e~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFaLmV 320 (739)
T PF07111_consen 241 EPEREELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFALMV 320 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 233334444444445555556668889999999999999999999988764333 333333332322221111
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Q 045448 471 TLQTLQKLHSQSQHEQKALTLELQNKLQKMKDMEVCNHDLEEGIEQVKRENQSLVELNSSSTITIQNLQNEIFNLKEMKE 550 (1756)
Q Consensus 471 al~~Le~l~sqsQeE~~~La~El~~~~~~L~~lE~~k~~l~~~~~~~~ee~~~L~eln~sS~~~i~~L~~Ei~~lke~~~ 550 (1756)
.|. ++||.+. .+...+...+..+.++...-..-. ......|+|
T Consensus 321 QLk----------------aQeleh~--------~~~~qL~~qVAsLQeev~sq~qEq---aiLq~SLqD---------- 363 (739)
T PF07111_consen 321 QLK----------------AQELEHR--------DSVKQLRGQVASLQEEVASQQQEQ---AILQHSLQD---------- 363 (739)
T ss_pred Hhh----------------HHHHHhh--------hHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhH----------
Confidence 111 1222222 223333334443333332221111 112222222
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhhh---hHH
Q 045448 551 KLEKEIALQEDKSNALQLEVRHLKEEIMGLSRRYQALVEQVLSVGLNPEHLGSAVKELQEENSKLKEVCKEQGD---EKE 627 (1756)
Q Consensus 551 ~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln~~~~~l~E~~~s~~l~~~s~~~~i~~Lq~en~kLkE~~~~~~~---Ek~ 627 (1756)
=+.|+..-=-.+++||.++.+..+....++.+..+..+++..+.=.+.|++. -|+..-.+++.....+.. -+.
T Consensus 364 -K~AElevERv~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~eav~S~q~---~L~s~ma~ve~a~aRL~sL~~RlS 439 (739)
T PF07111_consen 364 -KAAELEVERVGSKTLQAELSRAQEARRRLQQQTASAEEQLKLVSEAVSSSQQ---WLESQMAKVEQALARLPSLSNRLS 439 (739)
T ss_pred -HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 1222222224667899999999999999998888888887776544444444 344555555554444333 111
Q ss_pred HHHHHHHhHhHHHHHHHHHHHhHhhhcccccchhhhHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhHHHH--------
Q 045448 628 VLHEKLKNMDNLLKKNAALEGSLSEMNIKLEGSGERVNDLQKSCQFLREEKSSLVAEKATLLSQLQIMTENM-------- 699 (1756)
Q Consensus 628 ~l~ekl~~~e~L~~k~~~le~sls~~~~ele~lr~~vk~Lqe~~~~Lke~~s~~~sEK~aL~~qlq~~~~~m-------- 699 (1756)
-...++.-|..|.-+--+|-.-=..-+. | +--.+- .|..+.-.++.|++.|.++||...+-+
T Consensus 440 yAvrrv~tiqGL~Ark~Alaqlrqe~~~-~--~pp~~~-------dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~Ar 509 (739)
T PF07111_consen 440 YAVRRVHTIQGLMARKLALAQLRQEQCP-P--SPPSVT-------DLSLELQQLREERDRLDAELQLSARLIQQEVGRAR 509 (739)
T ss_pred HHhcccchhHHHHHHHHHHHHHHhccCC-C--CCCchh-------hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1234445555554433332221111111 1 112222 344555566777777777776655443
Q ss_pred -------HHHHHHHhhHHhhhhhhhhhhHHHHH
Q 045448 700 -------QKLLEKNVTLEHSLAGANVELEGLRA 725 (1756)
Q Consensus 700 -------~kLlEkns~LE~SLSd~n~ELe~lR~ 725 (1756)
.+|.+++..||.+|.+..-.+..+..
T Consensus 510 EqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~ 542 (739)
T PF07111_consen 510 EQGEAERQQLSEVAQQLEQELQEKQESLAELEE 542 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777777776666555554433
No 90
>PRK11637 AmiB activator; Provisional
Probab=97.15 E-value=0.29 Score=60.77 Aligned_cols=40 Identities=8% Similarity=0.247 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 045448 267 ERISTLEKMIIQAQEDSKGLNERASKAEIEAQKLKQELSR 306 (1756)
Q Consensus 267 ErLS~LE~~Ls~AQeelk~L~ERa~kAE~Ele~LKqeL~~ 306 (1756)
+++..++..+...+.++..+.......+.++..+..+|..
T Consensus 47 ~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~ 86 (428)
T PRK11637 47 DQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQ 86 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433333334444333333333
No 91
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.41 Score=62.34 Aligned_cols=126 Identities=25% Similarity=0.283 Sum_probs=77.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHhHHHH
Q 045448 562 KSNALQLEVRHLKEEIMGLSRRYQALVEQVLSVGLNPEHLGSAVKELQEENSKLKEVCKEQGDEKEVLHEKLKNMDNLLK 641 (1756)
Q Consensus 562 ~~~~LQ~Ei~~~KeE~~~Ln~~~~~l~E~~~s~~l~~~s~~~~i~~Lq~en~kLkE~~~~~~~Ek~~l~ekl~~~e~L~~ 641 (1756)
..+.+|-++..+|++++.+..+-.+..+.+.+.|.....+....+...-+.+.|++.++-+......+++++.-++
T Consensus 807 ~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~---- 882 (970)
T KOG0946|consen 807 RLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLE---- 882 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHH----
Confidence 5677888999999999999988888888888888776666666666666666777766666666666665554332
Q ss_pred HHHHHHHhHhhhcccccchhhhHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHH
Q 045448 642 KNAALEGSLSEMNIKLEGSGERVNDLQKSCQFLREEKSSLVAEKATLLSQLQIMTENMQKLLE 704 (1756)
Q Consensus 642 k~~~le~sls~~~~ele~lr~~vk~Lqe~~~~Lke~~s~~~sEK~aL~~qlq~~~~~m~kLlE 704 (1756)
+.++-+.+---++.-.. ..|.-++.....|++-++--+.-.-+.|+-|=+
T Consensus 883 -----------~qadse~l~ka~~~~k~--~nl~lki~s~kqeqee~~v~~~~~~~~i~alk~ 932 (970)
T KOG0946|consen 883 -----------AQADSETLSKALKTVKS--ENLSLKIVSNKQEQEELLVLLADQKEKIQALKE 932 (970)
T ss_pred -----------HhhcchHHHHHHHHhhc--ccchhcccchhhhHHHHHHHHhhHHHHHHHHHH
Confidence 23333333333333333 344444555555555555444333334443333
No 92
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.12 E-value=2.2 Score=57.54 Aligned_cols=182 Identities=16% Similarity=0.153 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 392 QEHAKQLNSEILMGAEKLRTSEQQ----------CVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDE 461 (1756)
Q Consensus 392 eeev~rLn~EiE~l~~kle~lEe~----------~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE 461 (1756)
-+.+..|..+|......+..+..- ...|.+.-.......+.+..+..+...-|.++..-....+.-|+
T Consensus 1510 peqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~-- 1587 (1758)
T KOG0994|consen 1510 PEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQ-- 1587 (1758)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 345555555555555555544431 11233344444444444444444444444433333333333332
Q ss_pred HHhHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHH
Q 045448 462 QSRFAQVEVTLQTLQKLHSQSQHEQKALTLELQNKLQKMKDMEVCNHDLEEGIEQVKRENQSLVELNSSSTITIQNLQNE 541 (1756)
Q Consensus 462 ~~K~~q~E~al~~Le~l~sqsQeE~~~La~El~~~~~~L~~lE~~k~~l~~~~~~~~ee~~~L~eln~sS~~~i~~L~~E 541 (1756)
++-+....-+.+.-+.|++...----+....+.|.+||.....|+....+...+-......--+....-.+-...
T Consensus 1588 -----~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~ 1662 (1758)
T KOG0994|consen 1588 -----GADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQG 1662 (1758)
T ss_pred -----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233334444555555565555444455666777888888888887777665555444333322322222222222
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhh
Q 045448 542 IFNLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIMGL 580 (1756)
Q Consensus 542 i~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~L 580 (1756)
+..+.........=+..+.....+-++-...++.+-..|
T Consensus 1663 ~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~L 1701 (1758)
T KOG0994|consen 1663 LEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKL 1701 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 222333233333323334445555555555555554444
No 93
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.11 E-value=0.049 Score=58.56 Aligned_cols=131 Identities=20% Similarity=0.212 Sum_probs=80.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHHhhHHHHHHHHH
Q 045448 307 LENEKEAGLLQYKQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLN---EEKEAIAFRYDQCLDKIAQ 383 (1756)
Q Consensus 307 lEaEkEa~llQykQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~Le---eEKeal~l~y~q~lekIse 383 (1756)
+..+.+.+..++.++..++-.|+......+..+.+++..+..++.+++.+...+..+. ++.+.......+...+|..
T Consensus 5 lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~ 84 (143)
T PF12718_consen 5 LKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQL 84 (143)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHH
Confidence 4445555555555555555556666666666666666666666666666555554433 2222222333477788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHH
Q 045448 384 MESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKI 437 (1756)
Q Consensus 384 LE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKI 437 (1756)
||.++..+...+......+..+..+...++..+..|+.+.......|+.+..++
T Consensus 85 LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~ 138 (143)
T PF12718_consen 85 LEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKY 138 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 888888888888888888877777777777766556555555555555554444
No 94
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.08 E-value=0.74 Score=59.73 Aligned_cols=185 Identities=22% Similarity=0.268 Sum_probs=104.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHHHhhHHHHHHHHH---HHHHHH
Q 045448 175 HEAEDKADSELETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLDERASKADIEVKVLK---EALIRL 251 (1756)
Q Consensus 175 s~r~~eaEeEIdeLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~eRA~kAE~EIqsLK---etLakL 251 (1756)
..+..+...+++.|++++..+.++++.+...+......+..++.++..+.....++..........+..|- ..+++|
T Consensus 320 ~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL 399 (594)
T PF05667_consen 320 EDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKL 399 (594)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34456788999999999999999999999999999999999999999888888777553333333322232 233444
Q ss_pred HHh------------------hhhcHHHHHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 252 EAE------------------RDAGLLQYNHCLERISTLEKMIIQAQEDSKGLNERASKAEIEAQKLKQELSRLENEKEA 313 (1756)
Q Consensus 252 Ese------------------kdasllQyqq~lErLS~LE~~Ls~AQeelk~L~ERa~kAE~Ele~LKqeL~~lEaEkEa 313 (1756)
+.- |.-.+..|.......+.-+.+..+-..+++.+...+.....++....+.+..|..+.+.
T Consensus 400 ~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~ 479 (594)
T PF05667_consen 400 QALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEK 479 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 433 22222222222222222222222222333333333333333333333333333332221
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhh
Q 045448 314 GLLQYKQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLN 364 (1756)
Q Consensus 314 ~llQykQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~Le 364 (1756)
.--. -..+....+|-..=.++..++..|++.-.++..|+++|..+.
T Consensus 480 ~~k~-----~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~ 525 (594)
T PF05667_consen 480 LPKD-----VNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLT 525 (594)
T ss_pred CCCC-----CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1000 012333444555566777888888888899999999886665
No 95
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.04 E-value=1.2 Score=53.08 Aligned_cols=187 Identities=12% Similarity=0.204 Sum_probs=111.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHH
Q 045448 281 EDSKGLNERASKAEIEAQKLKQELSRLENEKEAGLLQYKQCLEMIYALESKISLAEENAGMLNEQTE---KAETEVKALK 357 (1756)
Q Consensus 281 eelk~L~ERa~kAE~Ele~LKqeL~~lEaEkEa~llQykQ~lEkIseLEkKIs~lEe~v~slnqrie---rle~Ei~~Lk 357 (1756)
..+..+.+.....-..+..+.+.+..+.+.++....+++++-++.+++..++..+-..+..+....+ ..-..+..++
T Consensus 34 ~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~le 113 (294)
T COG1340 34 KEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLE 113 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHH
Confidence 3333444444444445555555555666666666666666666666666666666666666555444 2233334444
Q ss_pred HHHhhhhhhHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHH
Q 045448 358 QALTGLNEEKEAI---AFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLV 434 (1756)
Q Consensus 358 qEL~~LeeEKeal---~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~ 434 (1756)
.+|..|+--=.+. ...-.+...+|+.|+.++..++.- ...+..+..+..++..+......+-..+..+..+++++-
T Consensus 114 r~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~-~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~h 192 (294)
T COG1340 114 REIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKA-LEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYH 192 (294)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443211111 122336677888888888776633 334555555556666666655555557888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Q 045448 435 QKIAIKDQELSQKQRELENLQASLQDEQSRFAQV 468 (1756)
Q Consensus 435 eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~ 468 (1756)
.++...-++.+..+.+++-++..+-.-..+..+.
T Consensus 193 e~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~ 226 (294)
T COG1340 193 EEMIKLFEEADELRKEADELHEEFVELSKKIDEL 226 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 8888888888888888888777776655444433
No 96
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.03 E-value=1.2 Score=53.00 Aligned_cols=174 Identities=17% Similarity=0.265 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHhhhhcHHHHHhHHHHHHHHHHHHHHHHhhhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhH-
Q 045448 240 EVKVLKEALIRLEAERDAGLLQYNHCLERISTLEKMIIQAQEDSKGLNERAS---KAEIEAQKLKQELSRLENEKEAGL- 315 (1756)
Q Consensus 240 EIqsLKetLakLEsekdasllQyqq~lErLS~LE~~Ls~AQeelk~L~ERa~---kAE~Ele~LKqeL~~lEaEkEa~l- 315 (1756)
.++-+.+.+..+.+++|..+.+.++..++...+-..+..+-.++.++.+..+ .....+..+...|..++..-....
T Consensus 49 kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L 128 (294)
T COG1340 49 KVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVL 128 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCC
Confidence 3334444444444444444444444444444444444443334333333322 122233334444444433211111
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045448 316 --LQYKQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQE 393 (1756)
Q Consensus 316 --lQykQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaee 393 (1756)
..-.++.++|.+|.+++..++.... .+..+..+..+++.++.....+...-..+.-+.+.|-+.+-.+=.+...+..
T Consensus 129 ~~e~E~~lvq~I~~L~k~le~~~k~~e-~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rk 207 (294)
T COG1340 129 TPEEERELVQKIKELRKELEDAKKALE-ENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRK 207 (294)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1134566778888887776664433 3445555666666666666444444444444545555544444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 045448 394 HAKQLNSEILMGAEKLRTSEQ 414 (1756)
Q Consensus 394 ev~rLn~EiE~l~~kle~lEe 414 (1756)
.+..++.++.....++..+..
T Consensus 208 eade~he~~ve~~~~~~e~~e 228 (294)
T COG1340 208 EADELHEEFVELSKKIDELHE 228 (294)
T ss_pred HHHHHHHHHHHHHHHhHHHHH
Confidence 444444444444444444443
No 97
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.18 Score=65.37 Aligned_cols=221 Identities=20% Similarity=0.260 Sum_probs=130.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 045448 420 ERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQTLQKLHSQSQHEQKALTLELQNKLQK 499 (1756)
Q Consensus 420 e~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~~Le~l~sqsQeE~~~La~El~~~~~~ 499 (1756)
++++..+..++..+..+..-+..+|..+..-....+....++..+-. .++-..+.+ ..+-...++
T Consensus 736 ~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~----------~~~~~~~~q-----eqv~El~~~ 800 (970)
T KOG0946|consen 736 NEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQG----------SLNDNLGDQ-----EQVIELLKN 800 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccc----------hhhhhhhhH-----HHHHHHHHh
Confidence 44666666677776666666666666666666666555554332211 111111111 112223333
Q ss_pred hhhhhhhhHhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 045448 500 MKDMEVCNHDLEEGIEQVKRENQSLVELNSSSTITIQNLQNEIFNLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIMG 579 (1756)
Q Consensus 500 L~~lE~~k~~l~~~~~~~~ee~~~L~eln~sS~~~i~~L~~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~ 579 (1756)
|.+.-++.++++..+...+++.+++.+ .+..-.+.+..+..+-..+-.|....-++.-.|++++...+..+.-
T Consensus 801 l~e~~~~l~~~q~e~~~~keq~~t~~~-------~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ 873 (970)
T KOG0946|consen 801 LSEESTRLQELQSELTQLKEQIQTLLE-------RTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKE 873 (970)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHH-------HHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 677777788888888888888888754 3445566666666665566555555556777888888888888888
Q ss_pred hhHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHhHHHHHHHHHHHhHhhhccccc-
Q 045448 580 LSRRYQALVEQVLSVGLNPEHLGSAVKELQEENSKLKEVCKEQGDEKEVLHEKLKNMDNLLKKNAALEGSLSEMNIKLE- 658 (1756)
Q Consensus 580 Ln~~~~~l~E~~~s~~l~~~s~~~~i~~Lq~en~kLkE~~~~~~~Ek~~l~ekl~~~e~L~~k~~~le~sls~~~~ele- 658 (1756)
+-++..+|.+|..+.++ ...|+..+.+|..||=+--+.+.| -+. -...+.-++.+++.+-++++|.-.+
T Consensus 874 ltEk~~sl~~qadse~l-----~ka~~~~k~~nl~lki~s~kqeqe--e~~---v~~~~~~~~i~alk~~l~dL~q~~ee 943 (970)
T KOG0946|consen 874 LTEKISSLEAQADSETL-----SKALKTVKSENLSLKIVSNKQEQE--ELL---VLLADQKEKIQALKEALEDLNQPVEE 943 (970)
T ss_pred HhhhhhhHHHhhcchHH-----HHHHHHhhcccchhcccchhhhHH--HHH---HHHhhHHHHHHHHHHHHHHhCCChhh
Confidence 88888888877665544 444555555555555443333332 222 2233344667788888888887652
Q ss_pred --chhhhHHHHHHHhh
Q 045448 659 --GSGERVNDLQKSCQ 672 (1756)
Q Consensus 659 --~lr~~vk~Lqe~~~ 672 (1756)
....+.+..++...
T Consensus 944 ie~e~~s~~~e~e~~~ 959 (970)
T KOG0946|consen 944 IEDEKVSIIGEQEASL 959 (970)
T ss_pred HHhhhhcccchhhhhh
Confidence 33334455554443
No 98
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.89 E-value=0.79 Score=51.65 Aligned_cols=120 Identities=20% Similarity=0.249 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcHHHHHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 045448 237 ADIEVKVLKEALIRLEAERDAGLLQYNHCLERISTLEKMIIQAQEDSKGLNERASKAEIEAQKLKQELSRLENEKEAGLL 316 (1756)
Q Consensus 237 AE~EIqsLKetLakLEsekdasllQyqq~lErLS~LE~~Ls~AQeelk~L~ERa~kAE~Ele~LKqeL~~lEaEkEa~ll 316 (1756)
+++++.+++.++..++.+-|.+-..|...++++..++.-......-.+.+..++.+.+..+..+...++....--
T Consensus 2 ae~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~ia----- 76 (205)
T KOG1003|consen 2 AEADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIA----- 76 (205)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-----
Confidence 456777888888888877555444555555555554444333333334455555555555554444444321111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q 045448 317 QYKQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGL 363 (1756)
Q Consensus 317 QykQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~L 363 (1756)
.....+..+-..+++..+-++.+...+++-.++.+..|..++.-+
T Consensus 77 --E~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~ 121 (205)
T KOG1003|consen 77 --EKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRIL 121 (205)
T ss_pred --HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 112234444445555555555555555555555555555555433
No 99
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=96.89 E-value=1.6 Score=53.59 Aligned_cols=46 Identities=26% Similarity=0.233 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhhhH
Q 045448 435 QKIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQTLQKLHSQSQ 483 (1756)
Q Consensus 435 eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~~Le~l~sqsQ 483 (1756)
+++.....+-.+-++|..+||..+..|..|+ |+-|++|.-+-+.++
T Consensus 278 ek~~qy~~Ee~~~reen~rlQrkL~~e~erR---ealcr~lsEsessle 323 (552)
T KOG2129|consen 278 EKLMQYRAEEVDHREENERLQRKLINELERR---EALCRMLSESESSLE 323 (552)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhHHHH
Confidence 4555666666778889999999999999887 566887776655544
No 100
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.72 E-value=4.2 Score=54.43 Aligned_cols=184 Identities=22% Similarity=0.190 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhHhHHHHHHHHHHHhHhhhcccccchhhhHHHHHHHhhHHHHHHhhhhHHHHHHH
Q 045448 610 EENSKLKEVCKEQGDEKEVLHEKLKNMDNLLKKNAALEGSLSEMNIKLEGSGERVNDLQKSCQFLREEKSSLVAEKATLL 689 (1756)
Q Consensus 610 ~en~kLkE~~~~~~~Ek~~l~ekl~~~e~L~~k~~~le~sls~~~~ele~lr~~vk~Lqe~~~~Lke~~s~~~sEK~aL~ 689 (1756)
....++-.+|.-.-..++-+...++++.-...++-.-..+|.++....+++...+....................+..+.
T Consensus 516 ~~LekeVh~C~DLLsgkadLE~fieE~s~tLdwIls~~~SLqDv~s~~sEIK~~f~~~ss~e~E~~~~dea~~~~~~el~ 595 (769)
T PF05911_consen 516 LVLEKEVHVCQDLLSGKADLERFIEEFSLTLDWILSNCFSLQDVSSMRSEIKKNFDGDSSSEAEINSEDEADTSEKKELE 595 (769)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHHH
Confidence 33334445666666667777777777777777777777777776666666666555544443333333344444455555
Q ss_pred HHHHHhHHHHHHHHHHHhhHHhhhhhhhhhhHHHHHHHHhHHHHHHHHHhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHH
Q 045448 690 SQLQIMTENMQKLLEKNVTLEHSLAGANVELEGLRAKSKSLEDFCRMLKNEKSNLLNERSTLVSQLEDVEKRLGNLERRF 769 (1756)
Q Consensus 690 ~qlq~~~~~m~kLlEkns~LE~SLSd~n~ELe~lR~K~K~lEEscq~l~~ekS~L~~Ek~~L~SQL~~~t~~l~~Le~k~ 769 (1756)
.++ +++-....-||-.|...+..++.++.+++.+|.....|+.+-..+..=++.+-.||+.++..-+.|+-
T Consensus 596 eel-------E~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~-- 666 (769)
T PF05911_consen 596 EEL-------EKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLET-- 666 (769)
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 554 44455667788889999999999999999999999999998887777778888888888777666554
Q ss_pred hHHhHhhhhhHHHHhHhHHHHHHHHHHHHHHHHHHHhh
Q 045448 770 TKLEEKYADIEREKESTLSQVEELRYSLTNEQLERANY 807 (1756)
Q Consensus 770 t~LE~~~s~~~~Eke~~~~qv~~L~~~L~~e~e~~~~~ 807 (1756)
++.++..|...+..++..|...|..+|.-|...
T Consensus 667 -----~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~ 699 (769)
T PF05911_consen 667 -----RLKDLEAEAEELQSKISSLEEELEKERALSEEL 699 (769)
T ss_pred -----hhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 555667788889999999999999998876653
No 101
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=96.67 E-value=3.8 Score=53.45 Aligned_cols=333 Identities=20% Similarity=0.223 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----------------HHHHHHHhhhhhhHHHHHHhhHHHHHHHHH
Q 045448 321 CLEMIYALESKISLAEENAGMLNEQTEKAETEV-----------------KALKQALTGLNEEKEAIAFRYDQCLDKIAQ 383 (1756)
Q Consensus 321 ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei-----------------~~LkqEL~~LeeEKeal~l~y~q~lekIse 383 (1756)
.....+.|.+.++..+.++..+...+.++++-| ..|...+..|++|++++-.--.-+.-++..
T Consensus 195 ~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqS 274 (739)
T PF07111_consen 195 AQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRDALQATAELLQVRVQS 274 (739)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666666666666665555554444 667788889999999888777777777777
Q ss_pred HHHHHHHHHHHHHHHHH-------H-HHHHHHHHHHHHHHHh----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 384 MESEIFNAQEHAKQLNS-------E-ILMGAEKLRTSEQQCV----LLERANHSLQVEAESLVQKIAIKDQELSQKQREL 451 (1756)
Q Consensus 384 LE~ELseaeeev~rLn~-------E-iE~l~~kle~lEe~~~----~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~ 451 (1756)
|..-+.--++++-+--. + ......=+.--.++|+ .|..+--.....+..+..+++.++.++.....+.
T Consensus 275 Lt~IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFaLmVQLkaQeleh~~~~~qL~~qVAsLQeev~sq~qEq 354 (739)
T PF07111_consen 275 LTDILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFALMVQLKAQELEHRDSVKQLRGQVASLQEEVASQQQEQ 354 (739)
T ss_pred HHHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655443333222110 0 0011111121222222 3344444445555566667777777777777777
Q ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhh----hhhhhHhHHHHHHHHHHHHHHHHhh
Q 045448 452 ENLQASLQDEQSRFAQVEVTLQTLQKLHSQSQHEQKALTLELQNKLQKMKD----MEVCNHDLEEGIEQVKRENQSLVEL 527 (1756)
Q Consensus 452 e~Lqs~IqdE~~K~~q~E~al~~Le~l~sqsQeE~~~La~El~~~~~~L~~----lE~~k~~l~~~~~~~~ee~~~L~el 527 (1756)
..|+..++|=...+---=+.-.+|+--.+..|++...+-+-.......|+- +-.+..+|+..+.+++.....|..+
T Consensus 355 aiLq~SLqDK~AElevERv~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~eav~S~q~~L~s~ma~ve~a~aRL~sL 434 (739)
T PF07111_consen 355 AILQHSLQDKAAELEVERVGSKTLQAELSRAQEARRRLQQQTASAEEQLKLVSEAVSSSQQWLESQMAKVEQALARLPSL 434 (739)
T ss_pred HHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776666443322111222344444555555555544433333333322 2333445555555555544444332
Q ss_pred hcc-------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hh-hhHHHHH
Q 045448 528 NSS-------------------------------STITIQNLQNEIFNLKEMKEKLEKEIALQ-------ED-KSNALQL 568 (1756)
Q Consensus 528 n~s-------------------------------S~~~i~~L~~Ei~~lke~~~~LE~Ev~~~-------v~-~~~~LQ~ 568 (1756)
+.= +.-.--.|..|+..+++.-..|-+|+.+- |+ -......
T Consensus 435 ~~RlSyAvrrv~tiqGL~Ark~Alaqlrqe~~~~~pp~~~dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEqgea 514 (739)
T PF07111_consen 435 SNRLSYAVRRVHTIQGLMARKLALAQLRQEQCPPSPPSVTDLSLELQQLREERDRLDAELQLSARLIQQEVGRAREQGEA 514 (739)
T ss_pred hHHHHHHhcccchhHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 210 11122344555555555555554443321 10 1112223
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHhHh-HHHHHHHHH
Q 045448 569 EVRHLKEEIMGLSRRYQALVEQVLSVGLNPEHLGSAVKELQEENSKLKEVCKEQGDEKE-VLHEKLKNMD-NLLKKNAAL 646 (1756)
Q Consensus 569 Ei~~~KeE~~~Ln~~~~~l~E~~~s~~l~~~s~~~~i~~Lq~en~kLkE~~~~~~~Ek~-~l~ekl~~~e-~L~~k~~~l 646 (1756)
|+..+.+..+.|....+.-.+.+..++.+.+........-...-..|............ +|.+++-+++ .+.+.++.|
T Consensus 515 E~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y~~alqekvsevEsrl~E~L~~~ 594 (739)
T PF07111_consen 515 ERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQEVYERALQEKVSEVESRLREQLSEM 594 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444333334444444444444444444444444444444444443333 4555555554 345555566
Q ss_pred HHhHhhh
Q 045448 647 EGSLSEM 653 (1756)
Q Consensus 647 e~sls~~ 653 (1756)
+..|..+
T Consensus 595 E~rLNeA 601 (739)
T PF07111_consen 595 EKRLNEA 601 (739)
T ss_pred HHHHHHH
Confidence 6555544
No 102
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.62 E-value=4 Score=52.88 Aligned_cols=201 Identities=16% Similarity=0.167 Sum_probs=100.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHhhhcccH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 045448 506 CNHDLEEGIEQVKRENQSLVELNSSST----ITIQNLQNEIFNLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIMGLS 581 (1756)
Q Consensus 506 ~k~~l~~~~~~~~ee~~~L~eln~sS~----~~i~~L~~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln 581 (1756)
-+.+|+-+++..+--++.|...-.+++ ..|.+||.-+++---.-.++|.=+.-+++..+.|=.-. .
T Consensus 613 Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~----------v 682 (961)
T KOG4673|consen 613 EIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWEREERSLNERLSDSQTLLRIN----------V 682 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHH----------H
Confidence 355666677776666666655544443 25667777777777777777777777777666552211 1
Q ss_pred HHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHhHHHHHHHHHHHhHhhhcccccchh
Q 045448 582 RRYQALVEQVLSVGLNPEHLGSAVKELQEENSKLKEVCKEQGDEKEVLHEKLKNMDNLLKKNAALEGSLSEMNIKLEGSG 661 (1756)
Q Consensus 582 ~~~~~l~E~~~s~~l~~~s~~~~i~~Lq~en~kLkE~~~~~~~Ek~~l~ekl~~~e~L~~k~~~le~sls~~~~ele~lr 661 (1756)
.+-++-.+++-+.++..-+.-....-|+-++..|..-..+ +++. -......++.+-.+.+.+.
T Consensus 683 ~~eqgekqElL~~~~~l~s~~~q~sllraE~~~l~~~le~---e~nr--------------~~~~~~e~~~~qeE~~~l~ 745 (961)
T KOG4673|consen 683 LEEQGEKQELLSLNFSLPSSPIQLSLLRAEQGQLSKSLEK---ERNR--------------AAENRQEYLAAQEEADTLE 745 (961)
T ss_pred HHHhhhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHH---HHHH--------------HhhhHHHHHHHHHHHHHHH
Confidence 1113334444455554444444445555555544332221 1111 1122223333334445666
Q ss_pred hhHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhHHHH------HHHHHH-------HhhHHhhhhhhhhhhHHHHHHHH
Q 045448 662 ERVNDLQKSCQFLREEKSSLVAEKATLLSQLQIMTENM------QKLLEK-------NVTLEHSLAGANVELEGLRAKSK 728 (1756)
Q Consensus 662 ~~vk~Lqe~~~~Lke~~s~~~sEK~aL~~qlq~~~~~m------~kLlEk-------ns~LE~SLSd~n~ELe~lR~K~K 728 (1756)
+...-|+..|..+|.. +..++...+.....+.++. ..=+++ -..+..+=|..|.+.-|.-.--.
T Consensus 746 ~r~~~le~e~r~~k~~---~~q~lq~~ll~ve~~~k~~e~~~~~~~~lers~a~i~Ssp~~s~~~SgSnee~ag~~~~f~ 822 (961)
T KOG4673|consen 746 GRANQLEVEIRELKRK---HKQELQEVLLHVELIQKDLEREKASRLDLERSTARINSSPVSSQLPSGSNEEIAGQNSAFE 822 (961)
T ss_pred HHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHhhhCHHHHhhcccccCccCCCCchhhCCCCchHhHhcccchhh
Confidence 6667777777766654 3334333333332222221 122333 12344444667777777655443
Q ss_pred hHHHHHHH
Q 045448 729 SLEDFCRM 736 (1756)
Q Consensus 729 ~lEEscq~ 736 (1756)
.=-.+|.+
T Consensus 823 ~dd~s~~~ 830 (961)
T KOG4673|consen 823 NDDFSEKR 830 (961)
T ss_pred ccchhhhh
Confidence 33344443
No 103
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.61 E-value=1.3 Score=49.90 Aligned_cols=172 Identities=19% Similarity=0.164 Sum_probs=106.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHHHHHHHhhhh
Q 045448 178 EDKADSELETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLDERASKADIEVKVLKEALIRLEAERDA 257 (1756)
Q Consensus 178 ~~eaEeEIdeLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~eRA~kAE~EIqsLKetLakLEsekda 257 (1756)
+..++.--.+|.+.-..++..++.++.--......+..+.+++...|.. ...+...+.|+..|+..+..|++.
T Consensus 10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqa----l~~aK~l~eEledLk~~~~~lEE~--- 82 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQA----LQKAKALEEELEDLKTLAKSLEEE--- 82 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3445555566777777777777777766666667777777777777643 345555677888888888888888
Q ss_pred cHHHHHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 258 GLLQYNHCLERISTLEKMIIQAQEDSKGLNERASKAEIEAQKLKQELSRLENEKEAGLLQYKQCLEMIYALESKISLAEE 337 (1756)
Q Consensus 258 sllQyqq~lErLS~LE~~Ls~AQeelk~L~ERa~kAE~Ele~LKqeL~~lEaEkEa~llQykQ~lEkIseLEkKIs~lEe 337 (1756)
+.+....-..++.+..++-..+..|.+.-.+...+...++.....+-.+......|+-.+..-|+.-..-++.-..
T Consensus 83 ----~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~ 158 (193)
T PF14662_consen 83 ----NRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQ 158 (193)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666666666666666677776667777777777777766665555444444444444444444444444
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHH
Q 045448 338 NAGMLNEQTEKAETEVKALKQAL 360 (1756)
Q Consensus 338 ~v~slnqrierle~Ei~~LkqEL 360 (1756)
.+..+..-+.....=+..|+.++
T Consensus 159 ~i~eL~~~ieEy~~~teeLR~e~ 181 (193)
T PF14662_consen 159 QIEELKKTIEEYRSITEELRLEK 181 (193)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444
No 104
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=96.51 E-value=3 Score=50.22 Aligned_cols=266 Identities=21% Similarity=0.258 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHHHhhH-HHHHHHHHHHHHHHHHhhhhcHHHHHh
Q 045448 186 ETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLDERASKA-DIEVKVLKEALIRLEAERDAGLLQYNH 264 (1756)
Q Consensus 186 deLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~eRA~kA-E~EIqsLKetLakLEsekdasllQyqq 264 (1756)
..++..+..|+.+...++......+.+...+..++.......-.+...+..- +--...|...|..|+.+++..+..|.+
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~ 102 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQ 102 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666666666666666665555444444333322 112567888899999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHH-Hh
Q 045448 265 CLERIST-LEKMIIQAQEDSKGLNERASKA-EIEAQKLKQELSRLENEKEAGLLQYKQCL-EMIYALESKISLAEEN-AG 340 (1756)
Q Consensus 265 ~lErLS~-LE~~Ls~AQeelk~L~ERa~kA-E~Ele~LKqeL~~lEaEkEa~llQykQ~l-EkIseLEkKIs~lEe~-v~ 340 (1756)
.-+.+.+ |..++.+++.+-..+...+... +..+..|...|..++.+.........++. ++|+ |++.+..-++. +.
T Consensus 103 EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVd-lEn~LE~EQE~lvN 181 (310)
T PF09755_consen 103 EEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVD-LENTLEQEQEALVN 181 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh-HHHHHHHHHHHHHH
Confidence 9888875 6677777776665554333221 22345666677766655433222222322 3333 55555443332 23
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045448 341 MLNEQTEKAETEVKALKQALTGLNEEKEAIAF---RYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCV 417 (1756)
Q Consensus 341 slnqrierle~Ei~~LkqEL~~LeeEKeal~l---~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~ 417 (1756)
.+..++..+..+...|+..| +..+. .+...... ..-..-.......+..|+.++.++..
T Consensus 182 ~L~Kqm~~l~~eKr~Lq~~l-------~~~~s~~~s~~d~~~~-~~~~Dt~e~~~shI~~Lr~EV~RLR~---------- 243 (310)
T PF09755_consen 182 RLWKQMDKLEAEKRRLQEKL-------EQPVSAPPSPRDTVNV-SEENDTAERLSSHIRSLRQEVSRLRQ---------- 243 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------ccccCCCCCcchHHhh-cccCCchhHHHHHHHHHHHHHHHHHH----------
Confidence 33344444444444444443 21111 11111000 00000011122223333333333322
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHh
Q 045448 418 LLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQTLQKLHS 480 (1756)
Q Consensus 418 ~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~~Le~l~s 480 (1756)
.+...+.+. ..+++...++..+.+.|=.+|+..++-|..++ |+-|..|--+-|
T Consensus 244 ----qL~~sq~e~---~~k~~~~~~eek~ireEN~rLqr~L~~E~err---eal~R~lsesEs 296 (310)
T PF09755_consen 244 ----QLAASQQEH---SEKMAQYLQEEKEIREENRRLQRKLQREVERR---EALCRHLSESES 296 (310)
T ss_pred ----HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 222222222 23444455566777888888888888887765 455555544433
No 105
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=96.50 E-value=1.7 Score=54.18 Aligned_cols=134 Identities=18% Similarity=0.164 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 321 CLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNS 400 (1756)
Q Consensus 321 ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~ 400 (1756)
++-.=.-|+++|..++..+..+..-++- |..|+..|..|.+||=-.++.-+.....+..|-.-+...+..++.-+.
T Consensus 336 Lq~sN~yLe~kvkeLQ~k~~kQqvfvDi----inkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~ 411 (527)
T PF15066_consen 336 LQCSNLYLEKKVKELQMKITKQQVFVDI----INKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRN 411 (527)
T ss_pred hhhccHHHHHHHHHHHHHhhhhhHHHHH----HHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333345788888888888877766554 567889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 401 EILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASL 458 (1756)
Q Consensus 401 EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~I 458 (1756)
+.+.+..+++.++.....|.++...--.+.......--.+++-|+.|.+|+++|+..-
T Consensus 412 eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lk 469 (527)
T PF15066_consen 412 EKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLK 469 (527)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9999999999999988888777766666666666677778899999999999988654
No 106
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.49 E-value=0.73 Score=53.65 Aligned_cols=103 Identities=26% Similarity=0.279 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHhhhhhhHH
Q 045448 291 SKAEIEAQKLKQELSRLENEKEAGLLQYKQCLEMIYALESKISLAEENAGMLNE--QTEKAETEVKALKQALTGLNEEKE 368 (1756)
Q Consensus 291 ~kAE~Ele~LKqeL~~lEaEkEa~llQykQ~lEkIseLEkKIs~lEe~v~slnq--rierle~Ei~~LkqEL~~LeeEKe 368 (1756)
.++..+++.++..+..++.+.+....|+.+....|.++..++..++.....-+. +++.+..|++.++..+
T Consensus 34 ~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~-------- 105 (239)
T COG1579 34 KKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERI-------- 105 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH--------
Confidence 344444444444444444444444444444444444444555444444433221 2233333333333333
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 369 AIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQ 414 (1756)
Q Consensus 369 al~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe 414 (1756)
..|+.++..+......+..++..+..++...+.
T Consensus 106 -------------~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~ 138 (239)
T COG1579 106 -------------NSLEDELAELMEEIEKLEKEIEDLKERLERLEK 138 (239)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555554444444444
No 107
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.49 E-value=4.8 Score=52.59 Aligned_cols=185 Identities=17% Similarity=0.151 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 324 MIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEIL 403 (1756)
Q Consensus 324 kIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~EiE 403 (1756)
.|..|+.-|......+..+..+-+..+. -|-.++..|......-...+.+....|+.+..++..+..+++.-.+.+.
T Consensus 395 ni~kL~~~v~~s~~rl~~L~~qWe~~R~---pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~ 471 (594)
T PF05667_consen 395 NIAKLQALVEASEQRLVELAQQWEKHRA---PLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYK 471 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333332 3555666667777777778888888888888888888888888887777
Q ss_pred HHHHHHHHHHHH---------HhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHH
Q 045448 404 MGAEKLRTSEQQ---------CVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQT 474 (1756)
Q Consensus 404 ~l~~kle~lEe~---------~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~~ 474 (1756)
.+..+++.+-+. +...-.-+..-+.+|..+......+..+++....-+++.-...++=.-|=.-...++..
T Consensus 472 qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdAKkDe~~rk 551 (594)
T PF05667_consen 472 QLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRDAKKDEAARK 551 (594)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCHHHHH
Confidence 777776655442 33344455566667777777777777777777777777776666544443334444444
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHHH
Q 045448 475 LQKLHSQSQHEQKALTLELQNKLQKMKDMEVCNHDLEEGIE 515 (1756)
Q Consensus 475 Le~l~sqsQeE~~~La~El~~~~~~L~~lE~~k~~l~~~~~ 515 (1756)
.=++..++++.-..|..-+ ..-+.+.....+|++.+.
T Consensus 552 aYK~La~lh~~c~~Li~~v----~~tG~~~rEirdLe~qI~ 588 (594)
T PF05667_consen 552 AYKLLASLHENCSQLIETV----EETGTISREIRDLEEQID 588 (594)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHH
Confidence 4455555554444444332 223333333455555443
No 108
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.48 E-value=6.3 Score=53.55 Aligned_cols=107 Identities=18% Similarity=0.157 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Q 045448 469 EVTLQTLQKLHSQSQHEQKALTLELQNKLQKMKDMEVCNHDLEEGIEQVKRENQSLVELNSSSTITIQNLQNEIFNLKEM 548 (1756)
Q Consensus 469 E~al~~Le~l~sqsQeE~~~La~El~~~~~~L~~lE~~k~~l~~~~~~~~ee~~~L~eln~sS~~~i~~L~~Ei~~lke~ 548 (1756)
.+++......+..+.+..+.+-..+.......++|..+...+.....++..+...|.....+.......+..++......
T Consensus 394 ~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~q 473 (1141)
T KOG0018|consen 394 QDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQ 473 (1141)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 34455555566666666666666666666677777777777777777788888888888887777777777777777666
Q ss_pred HHHHHHHHHHhh-hhhHHHHHHHHHHHHHH
Q 045448 549 KEKLEKEIALQE-DKSNALQLEVRHLKEEI 577 (1756)
Q Consensus 549 ~~~LE~Ev~~~v-~~~~~LQ~Ei~~~KeE~ 577 (1756)
+..+-.. .|. .....++.=+..+|.-.
T Consensus 474 l~das~d--r~e~sR~~~~~eave~lKr~f 501 (1141)
T KOG0018|consen 474 LLDASAD--RHEGSRRSRKQEAVEALKRLF 501 (1141)
T ss_pred HHhhhhh--hcccHHHHHHHHHHHHHHHhC
Confidence 6655432 222 23334455555555443
No 109
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.45 E-value=3.6 Score=50.41 Aligned_cols=170 Identities=19% Similarity=0.202 Sum_probs=106.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHH
Q 045448 422 ANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQTLQKLHSQSQ---HEQKALTLELQNKLQ 498 (1756)
Q Consensus 422 ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~~Le~l~sqsQ---eE~~~La~El~~~~~ 498 (1756)
+.+..+.+.......+....++|-.....+..|++.+..=+.-+-+.++..++|..+-+++| .-++.=.++|.....
T Consensus 117 e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~ 196 (499)
T COG4372 117 EREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSA 196 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555556666666666677777777777888887778888888999999999888888 555555566655555
Q ss_pred hhhhhhhhhHhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 045448 499 KMKDMEVCNHDLEEGIEQVKRENQSLVELNSSSTITIQNLQNEIFNLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIM 578 (1756)
Q Consensus 499 ~L~~lE~~k~~l~~~~~~~~ee~~~L~eln~sS~~~i~~L~~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~ 578 (1756)
.+..=...-..=.+-++...+++..+.-.-.+..-.|......|+.+-..+--=+.-+..+-...+.|+.+...+--|.-
T Consensus 197 ~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva 276 (499)
T COG4372 197 QIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVA 276 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433222333344455555555555444333334444444444444433333333333333466778888888888999
Q ss_pred hhhHHHHHHHHHH
Q 045448 579 GLSRRYQALVEQV 591 (1756)
Q Consensus 579 ~Ln~~~~~l~E~~ 591 (1756)
.|+.=|++-+++-
T Consensus 277 ~le~yyQ~y~~lr 289 (499)
T COG4372 277 QLEAYYQAYVRLR 289 (499)
T ss_pred HHHHHHHHHHHHH
Confidence 9998888877653
No 110
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.41 E-value=5.3 Score=52.00 Aligned_cols=137 Identities=20% Similarity=0.248 Sum_probs=71.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 369 AIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQ 448 (1756)
Q Consensus 369 al~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKq 448 (1756)
.+....+.+..+|..|+..-..-.+.+...+.+-+.+..++..++.-|...++.--.+...++.....+..+.++-...-
T Consensus 258 dl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~eKe~~~ 337 (786)
T PF05483_consen 258 DLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESESTQKALEEDLQQATKTLIQLTEEKEAQM 337 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34444566777777777777777777777777777777777766654444333334444444444444444444443333
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 045448 449 RELENLQASLQDEQSRFAQVEVTLQTLQKLHS-------QSQHEQKALTLELQNKLQKMKDMEVCNH 508 (1756)
Q Consensus 449 eE~e~Lqs~IqdE~~K~~q~E~al~~Le~l~s-------qsQeE~~~La~El~~~~~~L~~lE~~k~ 508 (1756)
++....+.... ...-+..++...|+.+.. .+-..+..|+.||+.+...|+++--.+.
T Consensus 338 Ee~nk~k~~~s---~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk~k~ 401 (786)
T PF05483_consen 338 EELNKAKAQHS---FVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMTKQKN 401 (786)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence 33333222211 111222223333332222 1233455677888888888887654443
No 111
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.41 E-value=0.33 Score=52.35 Aligned_cols=111 Identities=23% Similarity=0.298 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 382 AQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDE 461 (1756)
Q Consensus 382 seLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE 461 (1756)
-.++.++..++.+...+...+..+..++..++.....+....++.+.++..+..+|..+..++.....+++.+.+.-
T Consensus 6 l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk--- 82 (140)
T PF10473_consen 6 LHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEK--- 82 (140)
T ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 34677888888888888888889888888888877777778888888888888888888888888887777766443
Q ss_pred HHhHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHH
Q 045448 462 QSRFAQVEVTLQTLQKLHSQSQHEQKALTLELQNKLQKMKDMEVCNHDLEEGIEQVKRE 520 (1756)
Q Consensus 462 ~~K~~q~E~al~~Le~l~sqsQeE~~~La~El~~~~~~L~~lE~~k~~l~~~~~~~~ee 520 (1756)
..|+.+++.++.++.+|++++.++.+.+..+..+
T Consensus 83 -------------------------~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 83 -------------------------ENLDKELQKKQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4488899999999999999999999999988877
No 112
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=96.41 E-value=3.4 Score=49.74 Aligned_cols=60 Identities=23% Similarity=0.281 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCC
Q 045448 534 TIQNLQNEIFNLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIMGLSRRYQALVEQVLSVGL 596 (1756)
Q Consensus 534 ~i~~L~~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln~~~~~l~E~~~s~~l 596 (1756)
-|+.|.+|+..|+..+..-+.+. +......-++..++++|+..|..+.+.-+|...++-.
T Consensus 230 hI~~Lr~EV~RLR~qL~~sq~e~---~~k~~~~~~eek~ireEN~rLqr~L~~E~erreal~R 289 (310)
T PF09755_consen 230 HIRSLRQEVSRLRQQLAASQQEH---SEKMAQYLQEEKEIREENRRLQRKLQREVERREALCR 289 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888888777644 3444555666778888888887776666666665543
No 113
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.38 E-value=2.5 Score=47.85 Aligned_cols=126 Identities=22% Similarity=0.196 Sum_probs=69.9
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045448 262 YNHCLERISTLEKMIIQAQEDSKGLNERASKAEIEAQKLKQELSRLENEKEAGLLQYKQCLEMIYALESKISLAEENAGM 341 (1756)
Q Consensus 262 yqq~lErLS~LE~~Ls~AQeelk~L~ERa~kAE~Ele~LKqeL~~lEaEkEa~llQykQ~lEkIseLEkKIs~lEe~v~s 341 (1756)
-.+..+.+..|...+..+| .+-+.+.....|++.|+..+..++.+.... ..+-..++.....+...+..
T Consensus 38 na~L~~e~~~L~~q~~s~Q----qal~~aK~l~eEledLk~~~~~lEE~~~~L-------~aq~rqlEkE~q~L~~~i~~ 106 (193)
T PF14662_consen 38 NAQLAEEITDLRKQLKSLQ----QALQKAKALEEELEDLKTLAKSLEEENRSL-------LAQARQLEKEQQSLVAEIET 106 (193)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666555443 222233444566666666666666654333 33444455555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 342 LNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQL 398 (1756)
Q Consensus 342 lnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rL 398 (1756)
++..-.++..+++.++.....|..++.++=.+--.|-.-|...+..++..-..+..+
T Consensus 107 Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL 163 (193)
T PF14662_consen 107 LQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEEL 163 (193)
T ss_pred HHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 666666666677777777766766666666665555555555555444444433333
No 114
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.38 E-value=5.3 Score=51.64 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 045448 268 RISTLEKMIIQAQEDSKGLNERASKAEIEAQKLKQELSR 306 (1756)
Q Consensus 268 rLS~LE~~Ls~AQeelk~L~ERa~kAE~Ele~LKqeL~~ 306 (1756)
++.....-+..+|.++..+..|..-++..+=...+.|..
T Consensus 60 k~k~~~~llK~yQ~EiD~LtkRsk~aE~afl~vye~L~e 98 (629)
T KOG0963|consen 60 KLKMVNPLLKSYQSEIDNLTKRSKFAEAAFLDVYEKLIE 98 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 344445567788999999999999898888777777654
No 115
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.26 E-value=0.67 Score=53.94 Aligned_cols=114 Identities=21% Similarity=0.347 Sum_probs=72.0
Q ss_pred HHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHH
Q 045448 355 ALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLV 434 (1756)
Q Consensus 355 ~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~ 434 (1756)
.-...+.++..+++++.-.+......+..++.+++..+.+++.++.++.++..++..+.. ..+..+|+.+++...
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~-----~~e~~aL~~E~~~ak 102 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKD-----ERELRALNIEIQIAK 102 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----HHHHHHHHHHHHHHH
Confidence 333333334444444444444444455667777777777777777777777777755554 446777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH
Q 045448 435 QKIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQ 473 (1756)
Q Consensus 435 eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~ 473 (1756)
.++..++.+|.+..++...+...+.+...++..-|..+.
T Consensus 103 ~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~ 141 (239)
T COG1579 103 ERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLA 141 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777776666655444443
No 116
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.19 E-value=8.9 Score=52.30 Aligned_cols=88 Identities=16% Similarity=0.188 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHhHHHHHHHHHHH
Q 045448 569 EVRHLKEEIMGLSRRYQALVEQVLSVGLNPEHLGSAVKELQEENSKLKEVCKEQGDEKEVLHEKLKNMDNLLKKNAALEG 648 (1756)
Q Consensus 569 Ei~~~KeE~~~Ln~~~~~l~E~~~s~~l~~~s~~~~i~~Lq~en~kLkE~~~~~~~Ek~~l~ekl~~~e~L~~k~~~le~ 648 (1756)
.-...+.....|.+.|+.-...+..--.-.. .-|....+|+...+++-.+ -..+++.|..|..+|---+.
T Consensus 1655 ~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~-------~ar~rAe~L~~eA~~Ll~~---a~~kl~~l~dLe~~y~~~~~ 1724 (1758)
T KOG0994|consen 1655 QALSAEQGLEILQKYYELVDRLLEKRMEGSQ-------AARERAEQLRTEAEKLLGQ---ANEKLDRLKDLELEYLRNEQ 1724 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-------hHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhH
Confidence 3334444555666655554444433222111 1222233444444444333 25677788888877777777
Q ss_pred hHhhhcccccchhhhHHH
Q 045448 649 SLSEMNIKLEGSGERVND 666 (1756)
Q Consensus 649 sls~~~~ele~lr~~vk~ 666 (1756)
.|.+.-+++.+|...|..
T Consensus 1725 ~L~~~~aeL~~Le~r~~~ 1742 (1758)
T KOG0994|consen 1725 ALEDKAAELAGLEKRVES 1742 (1758)
T ss_pred HHHHHHHHhhhHHHHHHH
Confidence 787888888887776643
No 117
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.19 E-value=2.5 Score=47.96 Aligned_cols=122 Identities=16% Similarity=0.186 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhHHHHh
Q 045448 345 QTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLR--TSEQQCVLLERA 422 (1756)
Q Consensus 345 rierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle--~lEe~~~~Le~e 422 (1756)
.+.+.+.--..|.+=|.+.++|-..+-.++..+-++...++..+.+...++.+++..+..+..-.. .+.+ ...|...
T Consensus 48 AL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~e-ReeL~~k 126 (194)
T PF15619_consen 48 ALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAE-REELQRK 126 (194)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh-HHHHHHH
Confidence 344444444555555556666666666666777777888888888888888887777776544222 2221 3345556
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHH
Q 045448 423 NHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDEQSRFAQVEV 470 (1756)
Q Consensus 423 le~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~ 470 (1756)
+..++..++.-..+|+.+++.+.-... .....+..|..|...+.+
T Consensus 127 L~~~~~~l~~~~~ki~~Lek~leL~~k---~~~rql~~e~kK~~~~~~ 171 (194)
T PF15619_consen 127 LSQLEQKLQEKEKKIQELEKQLELENK---SFRRQLASEKKKHKEAQE 171 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHH
Confidence 666666666666666666665443333 444455555555444333
No 118
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.12 E-value=0.63 Score=55.74 Aligned_cols=124 Identities=22% Similarity=0.292 Sum_probs=67.4
Q ss_pred ccchhhhHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHh-----------HHHHHHHHHHHhhHHhhhhhhhhhhHHHHH
Q 045448 657 LEGSGERVNDLQKSCQFLREEKSSLVAEKATLLSQLQIM-----------TENMQKLLEKNVTLEHSLAGANVELEGLRA 725 (1756)
Q Consensus 657 le~lr~~vk~Lqe~~~~Lke~~s~~~sEK~aL~~qlq~~-----------~~~m~kLlEkns~LE~SLSd~n~ELe~lR~ 725 (1756)
++.|..++|.|+++|..|+.+.+.++.|.+.+=.+=|.+ +..|..|.+.-+-=-.-...-+-|+-.|..
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Lls 241 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLS 241 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999998766554443222 112222222222222222333334444444
Q ss_pred HHHhHHHHHHHHHhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHhHHhHhhhhhHHHHhHhH
Q 045448 726 KSKSLEDFCRMLKNEKSNLLNERSTLVSQLEDVEKRLGNLERRFTKLEEKYADIEREKESTL 787 (1756)
Q Consensus 726 K~K~lEEscq~l~~ekS~L~~Ek~~L~SQL~~~t~~l~~Le~k~t~LE~~~s~~~~Eke~~~ 787 (1756)
.+-+++..|+.+ ..|.+.|..+|.+..++=..|-..+.+|.++|.+.-.=+-.+.
T Consensus 242 qivdlQ~r~k~~-------~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQ 296 (306)
T PF04849_consen 242 QIVDLQQRCKQL-------AAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQ 296 (306)
T ss_pred HHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444443 2344555555555555555555555555555555443333333
No 119
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.00 E-value=9.3 Score=50.88 Aligned_cols=174 Identities=19% Similarity=0.185 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHhHhhHH--
Q 045448 401 EILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASL---------QDEQSRFAQVE-- 469 (1756)
Q Consensus 401 EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~I---------qdE~~K~~q~E-- 469 (1756)
+|.++.+.+.+++..=+.|-..++..+..++.-.+.++.+..++...-+.++.+...- ..+..+-...+
T Consensus 266 EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d~~ 345 (717)
T PF09730_consen 266 EIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHEDGD 345 (717)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccccccccc
Confidence 3444444444444444444445555555555555555555555544444444444411 11111111111
Q ss_pred ------HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhHhH----HHHHHHHHHHHHHHHhhhcccHHHHHHHH
Q 045448 470 ------VTLQTLQKLHSQSQHEQKALTLELQNKLQKMKDMEVCNHDL----EEGIEQVKRENQSLVELNSSSTITIQNLQ 539 (1756)
Q Consensus 470 ------~al~~Le~l~sqsQeE~~~La~El~~~~~~L~~lE~~k~~l----~~~~~~~~ee~~~L~eln~sS~~~i~~L~ 539 (1756)
.....|+.-+...-.|+..|..||.....+++.++..-.+. ..+++.+......+..-.......+..|+
T Consensus 346 ~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE 425 (717)
T PF09730_consen 346 YYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELE 425 (717)
T ss_pred hhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 01234566666667777777777776666666665533222 33333333333333332222333455555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 045448 540 NEIFNLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIMGLS 581 (1756)
Q Consensus 540 ~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln 581 (1756)
.++..+...-..-. +..+..|.++.-+-+++-+|-
T Consensus 426 ~ELr~l~~~A~E~q-------~~LnsAQDELvtfSEeLAqLY 460 (717)
T PF09730_consen 426 KELRALSKLAGESQ-------GSLNSAQDELVTFSEELAQLY 460 (717)
T ss_pred HHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 55554444333333 467788888888888887774
No 120
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.00 E-value=10 Score=51.24 Aligned_cols=144 Identities=22% Similarity=0.257 Sum_probs=72.1
Q ss_pred HHHHhhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCccchhhhHhhHHHhhhhhhchhhhHH
Q 045448 885 IAELESENLEQQV---ETEFLLDELEKLRTGIYQVFRVLQFDPANWHEGKIEQGHIPIPQIVEDIEDLKSSVLRNEDEKQ 961 (1756)
Q Consensus 885 iseLE~e~~~~q~---e~~~l~~~~~~lr~gi~qv~~~l~~~~~~~~~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~q 961 (1756)
-++|++.+...+. ++..|-+.|.+...+|....+.|.--.....+-... +.+.-.+.++-..+.++..-.++-+
T Consensus 853 ~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~lek~~~~~---~~~dKe~Ek~~~rk~~Ll~KreE~~ 929 (1200)
T KOG0964|consen 853 KSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKNLEKEKKDN---INFDKELEKLVRRKHMLLKKREECC 929 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433 334556777777777777665554333332222111 1233344444555555555444322
Q ss_pred HHHHHHHHHHHHHHHhhhhchhhhhhhhhhHHHHHHH-HHHHhhhhhhhHHHHHHhHHHhh-----HHHHHHHHHHhhHH
Q 045448 962 QLVIENTVLLTLIGQLRLDGAEQESGKKIFEQELMSR-TEQHMMLQKDKDELLEMNKQLML-----EEAYLTLQEENSKL 1035 (1756)
Q Consensus 962 ~~~~E~svl~t~L~q~~~e~~~l~~ek~~l~~e~~~~-~~q~~~Lq~~~~~lle~n~ql~~-----~~s~~~lq~e~~~~ 1035 (1756)
.-+=+ ||-+-. .+++. |... +.++ ..+|..+|.+|+. ..+| +-..+.
T Consensus 930 ekIr~-------lG~Lp~---------daf~k-y~~~~~~el------~kkL~~~neelk~ys~VNKkAl----dQf~nf 982 (1200)
T KOG0964|consen 930 EKIRE-------LGVLPE---------DAFEK-YQDKKSKEL------MKKLHRCNEELKGYSNVNKKAL----DQFVNF 982 (1200)
T ss_pred HHHHh-------cCCCch---------HHHHH-hccCCHHHH------HHHHHHHHHHHhhcchhhHHHH----HHHHHH
Confidence 22111 111111 22333 2222 2222 2467888999988 3333 234566
Q ss_pred HHhhHHHHHHHhhhHHHHhhhhh
Q 045448 1036 LEEDRLLYERFLGLKKEISALEE 1058 (1756)
Q Consensus 1036 ~~e~~sL~~~~~~l~e~~~~led 1058 (1756)
.+...+|.++..+|..-+....|
T Consensus 983 seQre~L~~R~eELd~s~~sI~e 1005 (1200)
T KOG0964|consen 983 SEQRESLKKRQEELDRSKDSILE 1005 (1200)
T ss_pred HHHHHHHHHHHHHhccchhHHHH
Confidence 77788888888888777666554
No 121
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.91 E-value=9.5 Score=50.25 Aligned_cols=131 Identities=16% Similarity=0.249 Sum_probs=57.3
Q ss_pred HHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHH
Q 045448 356 LKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQ 435 (1756)
Q Consensus 356 LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~e 435 (1756)
++.....|+-+-++|-...++...||..+...+......+...+-.++....++..+.. ++.+++..+..+..
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqa-------rikE~q~kl~~l~~ 507 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQA-------RIKELQEKLQKLAP 507 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHH-------HHHHHHHHHHhhhh
Confidence 33333334444444444444444444444444444444444444444433333333333 33333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 045448 436 KIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQTLQKLHSQSQHEQKALTLELQNKLQKM 500 (1756)
Q Consensus 436 KIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~~Le~l~sqsQeE~~~La~El~~~~~~L 500 (1756)
.-+.+...|.+++. .......+..+-++++..=+-.......-++.|.-|+..+.+.+
T Consensus 508 Ekq~l~~qlkq~q~-------a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~ei 565 (1118)
T KOG1029|consen 508 EKQELNHQLKQKQS-------AHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEI 565 (1118)
T ss_pred HHHHHHHHHHHhhh-------hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333333333 22223334444455555555555555566666666665554433
No 122
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.80 E-value=8 Score=48.53 Aligned_cols=50 Identities=12% Similarity=0.310 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHhhhcHH
Q 045448 182 DSELETLKKTLAEIEAEKEAILMQYQQS---LQKFSSLERELNHAQKDAGGLD 231 (1756)
Q Consensus 182 EeEIdeLQkkI~aLQTEKE~LesQyEe~---keKLsElEkEIse~QKel~EL~ 231 (1756)
+.-..-+-.+|.+++++-+.+..+|++. -+++..++.....++.+.+.+.
T Consensus 263 ~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~ 315 (622)
T COG5185 263 EKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYE 315 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3444556667777777777777666543 2344445555555555555543
No 123
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.76 E-value=12 Score=50.20 Aligned_cols=76 Identities=25% Similarity=0.321 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 045448 293 AEIEAQKLKQELSRLENEKEAGLLQYKQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAF 372 (1756)
Q Consensus 293 AE~Ele~LKqeL~~lEaEkEa~llQykQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l 372 (1756)
+..+.+.|+.+++.+. +...|.......+.+++++....+..... ++.-++.|..++..++.
T Consensus 384 ~~~e~eqLr~elaql~----a~r~q~eka~~~~ee~e~~~l~~e~ry~k--------------lkek~t~l~~~h~~lL~ 445 (980)
T KOG0980|consen 384 NREEQEQLRNELAQLL----ASRTQLEKAQVLVEEAENKALAAENRYEK--------------LKEKYTELRQEHADLLR 445 (980)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Confidence 3344445666555433 34443444444455555555544443333 33334444445555555
Q ss_pred hhHHHHHHHHHHHH
Q 045448 373 RYDQCLDKIAQMES 386 (1756)
Q Consensus 373 ~y~q~lekIseLE~ 386 (1756)
.|.+.-..++.-+.
T Consensus 446 K~~di~kQle~~~~ 459 (980)
T KOG0980|consen 446 KYDDIQKQLESAEQ 459 (980)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555444443333
No 124
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.71 E-value=8.7 Score=48.27 Aligned_cols=53 Identities=15% Similarity=0.099 Sum_probs=32.1
Q ss_pred HHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045448 412 SEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDEQSR 464 (1756)
Q Consensus 412 lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K 464 (1756)
+++++..++.-+.+++.+++.+..++.+...+-..++++.++.+.-..-|..|
T Consensus 485 Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~ek 537 (622)
T COG5185 485 LEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEK 537 (622)
T ss_pred HHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45555555556666666777777677666666666666666555554444443
No 125
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=95.69 E-value=5.1 Score=45.49 Aligned_cols=145 Identities=19% Similarity=0.274 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHHHHHHHhhhhcHH
Q 045448 181 ADSELETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLDERASKADIEVKVLKEALIRLEAERDAGLL 260 (1756)
Q Consensus 181 aEeEIdeLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~eRA~kAE~EIqsLKetLakLEsekdasll 260 (1756)
|+.++..++.+|..++.+.+..+..|....+++.+.++.- ...+..++++..+.
T Consensus 2 ae~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~--------------dE~er~~Kv~enr~------------ 55 (205)
T KOG1003|consen 2 AEADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAA--------------DESERGMKVIENRA------------ 55 (205)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--------------cHHHHHHHHHHHHH------------
Confidence 5788888888888888888877777777766666554432 22223333333333
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045448 261 QYNHCLERISTLEKMIIQAQEDSKGLNERASKAEIEAQKLKQELSRLENEKEAGLLQYKQCLEMIYALESKISLAEENAG 340 (1756)
Q Consensus 261 Qyqq~lErLS~LE~~Ls~AQeelk~L~ERa~kAE~Ele~LKqeL~~lEaEkEa~llQykQ~lEkIseLEkKIs~lEe~v~ 340 (1756)
++.-+++..++.+++.|+ ..+..|....+..--.|.-.+.+.+.+-.+.--...++.+|+..+.....++.
T Consensus 56 --~kdEE~~e~~e~qLkEAk-------~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk 126 (205)
T KOG1003|consen 56 --QKLEEKMEAQEAQLKEAK-------HIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLK 126 (205)
T ss_pred --HhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Confidence 223334444555554332 22333444444444444444444443333223334566677777777777777
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 045448 341 MLNEQTEKAETEVKALKQAL 360 (1756)
Q Consensus 341 slnqrierle~Ei~~LkqEL 360 (1756)
++..--+.+....+..+..|
T Consensus 127 ~l~~~ee~~~q~~d~~e~~i 146 (205)
T KOG1003|consen 127 SLSAKEEKLEQKEEKYEEEL 146 (205)
T ss_pred HHHHHHHHHhhhHHHHHHHH
Confidence 77776666666666666666
No 126
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.56 E-value=13 Score=49.15 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=24.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 045448 372 FRYDQCLDKIAQMESEIFNAQEHAKQL--NSEILMGAEKLRTSEQ 414 (1756)
Q Consensus 372 l~y~q~lekIseLE~ELseaeeev~rL--n~EiE~l~~kle~lEe 414 (1756)
..+.++..+++.++.++..+...+... ...+..+..+++.++.
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~ 435 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQN 435 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 445566666666666666666655543 2445555555555555
No 127
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.54 E-value=4 Score=46.39 Aligned_cols=136 Identities=17% Similarity=0.204 Sum_probs=79.5
Q ss_pred hhhhhhhhHhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhhhhHHHHHHHH
Q 045448 500 MKDMEVCNHDLEEGIEQVKRENQSLVELNSSSTITIQNLQNEIFNLKEMKEKLEKEIA--------LQEDKSNALQLEVR 571 (1756)
Q Consensus 500 L~~lE~~k~~l~~~~~~~~ee~~~L~eln~sS~~~i~~L~~Ei~~lke~~~~LE~Ev~--------~~v~~~~~LQ~Ei~ 571 (1756)
|+..+.+..++-..+..|.+|+++|.+.---|....+.+...+......+.++..++. .++.+...|+..+.
T Consensus 49 L~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~ 128 (194)
T PF15619_consen 49 LQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLS 128 (194)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHH
Confidence 5555555666666666666666666555444444444433333333333222222222 25667777888888
Q ss_pred HHHHHHhhhhHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHhH
Q 045448 572 HLKEEIMGLSRRYQALVEQVLSVGLNPEHLGSAVKELQEENSKLKEVCKEQGDEKEVLHEKLKNMDN 638 (1756)
Q Consensus 572 ~~KeE~~~Ln~~~~~l~E~~~s~~l~~~s~~~~i~~Lq~en~kLkE~~~~~~~Ek~~l~ekl~~~e~ 638 (1756)
.+...+..-+++...|.-++... ..+|...+..-...+..+...|..+..|..-|..++.+-++
T Consensus 129 ~~~~~l~~~~~ki~~Lek~leL~---~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKer 192 (194)
T PF15619_consen 129 QLEQKLQEKEKKIQELEKQLELE---NKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKER 192 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88777777777766666666443 34555555555556666777777777777777777765443
No 128
>PRK09039 hypothetical protein; Validated
Probab=95.42 E-value=1.3 Score=53.94 Aligned_cols=116 Identities=12% Similarity=0.149 Sum_probs=52.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 332 ISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQ-------CLDKIAQMESEIFNAQEHAKQLNSEILM 404 (1756)
Q Consensus 332 Is~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q-------~lekIseLE~ELseaeeev~rLn~EiE~ 404 (1756)
|..+=..+..-..+...++..+..++.++..++..++.+...|.. .-.++..+..+|..........+.++..
T Consensus 62 Ia~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~ 141 (343)
T PRK09039 62 IAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVEL 141 (343)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 333333333334444455555555555555555555555444442 2223333344444444444444444444
Q ss_pred HHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 405 GAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQK 447 (1756)
Q Consensus 405 l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eK 447 (1756)
+...+..++.+++.|+..+...+........+|..+.++|..+
T Consensus 142 L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 142 LNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444455555555555555555555544443
No 129
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.39 E-value=1.9 Score=46.73 Aligned_cols=75 Identities=23% Similarity=0.271 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 382 AQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQA 456 (1756)
Q Consensus 382 seLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs 456 (1756)
-.||.++..++++...+-.+.+.....+.+++..+..+.+.+..+..++..+...-..+.+.+..++..+.-|.+
T Consensus 27 ~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~ 101 (140)
T PF10473_consen 27 ESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELES 101 (140)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444444444444444444444444444333
No 130
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=95.31 E-value=9.6 Score=46.20 Aligned_cols=93 Identities=17% Similarity=0.243 Sum_probs=59.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 371 AFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRE 450 (1756)
Q Consensus 371 ~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE 450 (1756)
-.+-+-..++-.++..-|..+-+-...++.+++....+++.++. ++..+....+.+...|-.+..+-.....+
T Consensus 215 r~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEK-------E~~~~k~k~e~~n~~l~~m~eer~~~~~~ 287 (309)
T PF09728_consen 215 REQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEK-------ENQTWKSKWEKSNKALIEMAEERQKLEKE 287 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33444455666667777777777777777777777777777776 77777777777777666666665555554
Q ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHHhhhHH
Q 045448 451 LENLQASLQDEQSRFAQVEVTLQTLQKLHSQSQH 484 (1756)
Q Consensus 451 ~e~Lqs~IqdE~~K~~q~E~al~~Le~l~sqsQe 484 (1756)
+..+.. .+..|+++...+|.
T Consensus 288 ~~~~~~--------------k~~kLe~LcRaLQ~ 307 (309)
T PF09728_consen 288 LEKLKK--------------KIEKLEKLCRALQA 307 (309)
T ss_pred HHHHHH--------------HHHHHHHHHHHHhh
Confidence 444433 34456666666664
No 131
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.26 E-value=2.1 Score=46.35 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 375 DQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQ 414 (1756)
Q Consensus 375 ~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe 414 (1756)
....+++........+++..+..|..+...+..++..+..
T Consensus 97 ~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~ 136 (143)
T PF12718_consen 97 KETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEE 136 (143)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555555555544
No 132
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=95.24 E-value=9.6 Score=45.79 Aligned_cols=94 Identities=18% Similarity=0.177 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 377 CLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQA 456 (1756)
Q Consensus 377 ~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs 456 (1756)
.--++..|+.++.++...++.-..-++..+..+.+..-+.-.++.-+++-+..+.....+-..++.+|.+.+.|--.|..
T Consensus 156 aesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQ 235 (305)
T PF14915_consen 156 AESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQ 235 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444455555666666666666666666666666666666
Q ss_pred HHHHHHHhHhhHHH
Q 045448 457 SLQDEQSRFAQVEV 470 (1756)
Q Consensus 457 ~IqdE~~K~~q~E~ 470 (1756)
.+++-+.|-.-.|.
T Consensus 236 QLddA~~K~~~kek 249 (305)
T PF14915_consen 236 QLDDAHNKADNKEK 249 (305)
T ss_pred HHHHHHHHHHHHHH
Confidence 66665555544443
No 133
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.08 E-value=9 Score=45.54 Aligned_cols=51 Identities=20% Similarity=0.129 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 045448 321 CLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIA 371 (1756)
Q Consensus 321 ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~ 371 (1756)
+..++..|+.-...++..+..++.+......=+..+......+..+|.++.
T Consensus 167 l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 167 LEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 334555555555555666666666555555556666666666666666555
No 134
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.03 E-value=15 Score=46.96 Aligned_cols=55 Identities=25% Similarity=0.281 Sum_probs=33.7
Q ss_pred hhhhhhhhhHhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 499 KMKDMEVCNHDLEEGIEQVKRENQSLVELNSSSTITIQNLQNEIFNLKEMKEKLEKEIA 557 (1756)
Q Consensus 499 ~L~~lE~~k~~l~~~~~~~~ee~~~L~eln~sS~~~i~~L~~Ei~~lke~~~~LE~Ev~ 557 (1756)
+|++..-.-..+-....+++++|=+|+.+-+ .++.-|-|+..++-.+..||.|+.
T Consensus 157 elKe~KfRE~RllseYSELEEENIsLQKqVs----~LR~sQVEyEglkheikRleEe~e 211 (772)
T KOG0999|consen 157 ELKEYKFREARLLSEYSELEEENISLQKQVS----NLRQSQVEYEGLKHEIKRLEEETE 211 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHH----HHhhhhhhhhHHHHHHHHHHHHHH
Confidence 3555555566777778888888888877654 455555555555554444444333
No 135
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=95.02 E-value=22 Score=48.83 Aligned_cols=124 Identities=20% Similarity=0.226 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 383 QMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDEQ 462 (1756)
Q Consensus 383 eLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~ 462 (1756)
+.+.++....+.++.+..+++.+...+..+.+...........+..+.+.+..+|....+++...+.++..++..+..+-
T Consensus 438 ~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e 517 (1041)
T KOG0243|consen 438 QEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEE 517 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555666666666666666666666544444566777888888888888888888888888888888877777
Q ss_pred HhHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhh
Q 045448 463 SRFAQVEVTLQTLQKLHSQSQHEQKALTLELQNKLQKMKDMEVC 506 (1756)
Q Consensus 463 ~K~~q~E~al~~Le~l~sqsQeE~~~La~El~~~~~~L~~lE~~ 506 (1756)
....+-+..-..+....-.+|-.++....+++....+|+.+..-
T Consensus 518 ~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~~~ 561 (1041)
T KOG0243|consen 518 EIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKDRL 561 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 76666666666666667777777777777776666666665443
No 136
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=94.98 E-value=16 Score=46.91 Aligned_cols=193 Identities=19% Similarity=0.218 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 045448 510 LEEGIEQVKRENQSLVELNSSSTITIQNLQNEIFNLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIMGLSRRYQALVE 589 (1756)
Q Consensus 510 l~~~~~~~~ee~~~L~eln~sS~~~i~~L~~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln~~~~~l~E 589 (1756)
++.++.++........+.-..+...-..+++.+..+...+...+.+-..--.....|..+=..-++....+.++-+.+.-
T Consensus 352 ~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR 431 (570)
T COG4477 352 FEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKR 431 (570)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333344445555555555555555443333334444444444445555555555555666
Q ss_pred HHHhhCCC--ccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHhHHHHHHHHHHHhHhhhcccccchhhhHHHH
Q 045448 590 QVLSVGLN--PEHLGSAVKELQEENSKLKEVCKEQGDEKEVLHEKLKNMDNLLKKNAALEGSLSEMNIKLEGSGERVNDL 667 (1756)
Q Consensus 590 ~~~s~~l~--~~s~~~~i~~Lq~en~kLkE~~~~~~~Ek~~l~ekl~~~e~L~~k~~~le~sls~~~~ele~lr~~vk~L 667 (1756)
-|..++|. |+.+.+. ......+.+.+++.|+..-++++.+...|..-
T Consensus 432 ~mek~nLPGlPe~~l~l-------------------------------~~~~~~~i~~l~~eLse~pinm~~v~~~v~~a 480 (570)
T COG4477 432 YMEKSNLPGLPETFLSL-------------------------------FFTAGHEIQDLMKELSEVPINMEAVSALVDIA 480 (570)
T ss_pred HHHHcCCCCCcHHHHHH-------------------------------HHhhhhHHHHHHHHHhhcCCcHHHHHHHHHHH
Confidence 66666662 4433333 23345667789999999999999999999999
Q ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhhhhhHHHHHHHHhHHHHHHHH
Q 045448 668 QKSCQFLREEKSSLVAEKATLLSQLQIMTENMQKLLEKNVTLEHSLAGANVELEGLRAKSKSLEDFCRML 737 (1756)
Q Consensus 668 qe~~~~Lke~~s~~~sEK~aL~~qlq~~~~~m~kLlEkns~LE~SLSd~n~ELe~lR~K~K~lEEscq~l 737 (1756)
++--..|.++-.. .-+++.|.+|+=+-+-.+- ..|+-+-.+|+.|-.=.+.-+.==..+|...++|
T Consensus 481 ~~~m~~l~~~t~e-~ve~a~LaE~lIQY~NRYR---s~~~~v~~~l~eAe~lF~~~~dY~~s~eia~qaL 546 (570)
T COG4477 481 TEDMNTLEDETEE-VVENAVLAEQLIQYGNRYR---SRNAEVAKSLNEAERLFENAFDYDASFEIASQAL 546 (570)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 9888888766544 4589999999965555543 2456666677666555554444445566655555
No 137
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.95 E-value=19 Score=47.60 Aligned_cols=27 Identities=15% Similarity=0.102 Sum_probs=11.8
Q ss_pred cchhhhHHHHHHHhhHHHHHHhhhhHH
Q 045448 658 EGSGERVNDLQKSCQFLREEKSSLVAE 684 (1756)
Q Consensus 658 e~lr~~vk~Lqe~~~~Lke~~s~~~sE 684 (1756)
+.+...+...+.-...|.+....+...
T Consensus 476 ~~~~~~~~~~~~~~~~l~~~~~~l~~~ 502 (650)
T TIGR03185 476 FELERAITIADKAKKTLKEFREKLLER 502 (650)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 138
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=94.89 E-value=12 Score=45.25 Aligned_cols=163 Identities=16% Similarity=0.189 Sum_probs=88.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 333 SLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYD----QCLDKIAQMESEIFNAQEHAKQLNSEILMGAEK 408 (1756)
Q Consensus 333 s~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~----q~lekIseLE~ELseaeeev~rLn~EiE~l~~k 408 (1756)
...+..+...+..-.++..+-..|...+ .+++.+|. ++-..+...+-++..+...+...+........+
T Consensus 117 ~dIq~~~ee~~~~~~k~~~eN~~L~eKl-------K~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k 189 (309)
T PF09728_consen 117 KDIQAQMEEQSERNIKLREENEELREKL-------KSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEK 189 (309)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3333344444444445555566666665 44555555 444455556666666666666666666665555
Q ss_pred HHHHHH-------HHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhh
Q 045448 409 LRTSEQ-------QCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQTLQKLHSQ 481 (1756)
Q Consensus 409 le~lEe-------~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~~Le~l~sq 481 (1756)
...... +|..+-.+-..|..++.-..++-.....-|.--..=+..++..|+.=.-+....|.....+.+-+-.
T Consensus 190 ~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~ 269 (309)
T PF09728_consen 190 AKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEK 269 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555 4444444555555555555555555555555555555555556665555556666666665555555
Q ss_pred hHHHHHHHHHHHHHHHHhhhh
Q 045448 482 SQHEQKALTLELQNKLQKMKD 502 (1756)
Q Consensus 482 sQeE~~~La~El~~~~~~L~~ 502 (1756)
+.--+-.+|.|-......+..
T Consensus 270 ~n~~l~~m~eer~~~~~~~~~ 290 (309)
T PF09728_consen 270 SNKALIEMAEERQKLEKELEK 290 (309)
T ss_pred HhHHHHHHHHHHHHHHHHHHH
Confidence 555555555444443333333
No 139
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=94.83 E-value=27 Score=48.88 Aligned_cols=58 Identities=14% Similarity=0.243 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCCCcc
Q 045448 542 IFNLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIMGLSRRYQALVEQVLSVGLNPE 599 (1756)
Q Consensus 542 i~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln~~~~~l~E~~~s~~l~~~ 599 (1756)
|...-+.+..|=.++...-+..+.|.++-.+.+.....+...++++.||++.++.++.
T Consensus 260 i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S~~ 317 (1109)
T PRK10929 260 IVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNA 317 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHH
Confidence 3334455666666666667788888999999999999999999999999999998755
No 140
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=94.81 E-value=31 Score=49.47 Aligned_cols=16 Identities=25% Similarity=0.162 Sum_probs=7.6
Q ss_pred HHHHHHHhhhhhHHHh
Q 045448 44 YRALAERYDNATGELR 59 (1756)
Q Consensus 44 yr~Laeryd~~~~el~ 59 (1756)
...+.+..+.+..++.
T Consensus 560 ~~~l~e~~~el~~e~~ 575 (1353)
T TIGR02680 560 EEVLEEERDALRTERE 575 (1353)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444455555555533
No 141
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=94.77 E-value=28 Score=48.75 Aligned_cols=27 Identities=11% Similarity=0.084 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 045448 320 QCLEMIYALESKISLAEENAGMLNEQT 346 (1756)
Q Consensus 320 Q~lEkIseLEkKIs~lEe~v~slnqri 346 (1756)
++..++......+..++.+....+.+.
T Consensus 106 ~Leq~l~~~~~~L~~~q~~l~~~~~~~ 132 (1109)
T PRK10929 106 ALEQEILQVSSQLLEKSRQAQQEQDRA 132 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333444444444444444444444444
No 142
>PRK09039 hypothetical protein; Validated
Probab=94.64 E-value=3.9 Score=50.03 Aligned_cols=62 Identities=15% Similarity=0.146 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHH
Q 045448 379 DKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIK 440 (1756)
Q Consensus 379 ekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~l 440 (1756)
..+......+..+.-.+.+|+.+|+.+...+-.++..+...+......+..++.+...|...
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888888888899999999999999999999888888888888888888888777655
No 143
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.55 E-value=0.45 Score=53.37 Aligned_cols=150 Identities=19% Similarity=0.228 Sum_probs=47.3
Q ss_pred cHHHHHhHHHHHHHHHHHHHHHHhhhhhHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 045448 258 GLLQYNHCLERISTLEKMIIQAQEDSKGLNE--------RASKAEIEAQKLKQELSRLENEKEAGLLQYKQCLEMIYALE 329 (1756)
Q Consensus 258 sllQyqq~lErLS~LE~~Ls~AQeelk~L~E--------Ra~kAE~Ele~LKqeL~~lEaEkEa~llQykQ~lEkIseLE 329 (1756)
.+.+|.+..++++.+......++.+...... .....-..+..+.+.+..+..+.....-...+...++..+.
T Consensus 22 li~ay~~L~d~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~ 101 (194)
T PF08614_consen 22 LIDAYNRLADRTSLLKAENEQLQPEAESLPSSSSSSPSESGSVSSAQISSLEQKLAKLQEELAELYRSKGELAQQLVELN 101 (194)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4567888888888887766554443221111 01111122334445555555444444433445566777777
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 330 SKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKL 409 (1756)
Q Consensus 330 kKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kl 409 (1756)
.++..++..+.....++..++.++..|+..+ ..++.++......++.++.++..+.-..
T Consensus 102 ~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~---------------------~~l~~~l~ek~k~~e~l~DE~~~L~l~~ 160 (194)
T PF08614_consen 102 DELQELEKELSEKERRLAELEAELAQLEEKI---------------------KDLEEELKEKNKANEILQDELQALQLQL 160 (194)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777777777 7788888888888888888888887777
Q ss_pred HHHHHHHhHHHHhhhHHHHHHHHHHH
Q 045448 410 RTSEQQCVLLERANHSLQVEAESLVQ 435 (1756)
Q Consensus 410 e~lEe~~~~Le~ele~Lq~Ele~l~e 435 (1756)
..+++ .+..++.|-..|.+
T Consensus 161 ~~~e~-------k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 161 NMLEE-------KLRKLEEENRELVE 179 (194)
T ss_dssp HHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHH-------HHHHHHHHHHHHHH
Confidence 77777 44444444444443
No 144
>PLN02939 transferase, transferring glycosyl groups
Probab=94.47 E-value=10 Score=52.00 Aligned_cols=127 Identities=31% Similarity=0.297 Sum_probs=77.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHhHHHHHHHHHHHhHhhhccc---------------ccchhh
Q 045448 598 PEHLGSAVKELQEENSKLKEVCKEQGDEKEVLHEKLKNMDNLLKKNAALEGSLSEMNIK---------------LEGSGE 662 (1756)
Q Consensus 598 ~~s~~~~i~~Lq~en~kLkE~~~~~~~Ek~~l~ekl~~~e~L~~k~~~le~sls~~~~e---------------le~lr~ 662 (1756)
..++...+.-|+.+|.-||..+.-+..+.....+-=+-+-.|-++.+.|..+|.++-.. .||+-+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (977)
T PLN02939 221 VHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWE 300 (977)
T ss_pred cccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHH
Confidence 34456667778888888888888877766655544455556666677777776665433 245555
Q ss_pred hHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhhhh------hHHHHHHHHhHHHHHH
Q 045448 663 RVNDLQKSCQFLREEKSSLVAEKATLLSQLQIMTENMQKLLEKNVTLEHSLAGANVE------LEGLRAKSKSLEDFCR 735 (1756)
Q Consensus 663 ~vk~Lqe~~~~Lke~~s~~~sEK~aL~~qlq~~~~~m~kLlEkns~LE~SLSd~n~E------Le~lR~K~K~lEEscq 735 (1756)
+|..||.-. .+-+.+.|+++++.+.. +.|=.|..-||.||-.+|+. ++-++.|+|.++|..+
T Consensus 301 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (977)
T PLN02939 301 KVENLQDLL-----DRATNQVEKAALVLDQN------QDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQ 368 (977)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHhccc------hHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 555555422 23456678888776542 23445555566666666643 3445566666665543
No 145
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=94.47 E-value=13 Score=43.67 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHHHHHHHhhhhcHHHHHhH
Q 045448 216 LERELNHAQKDAGGLDERASKADIEVKVLKEALIRLEAERDAGLLQYNHC 265 (1756)
Q Consensus 216 lEkEIse~QKel~EL~eRA~kAE~EIqsLKetLakLEsekdasllQyqq~ 265 (1756)
+-.+...++..-+.+.-|....+.|++.|...+..|.+.+.-+..|....
T Consensus 120 lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~ 169 (330)
T KOG2991|consen 120 LKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRST 169 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 33445555555556666777777777777777777777766665555543
No 146
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.46 E-value=16 Score=44.58 Aligned_cols=209 Identities=22% Similarity=0.254 Sum_probs=143.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Q 045448 471 TLQTLQKLHSQSQHEQKALTLELQNKLQKMKDMEVCNHDLEEGIEQVKRENQSLVELNSSSTITIQNLQNEIFNLKEMKE 550 (1756)
Q Consensus 471 al~~Le~l~sqsQeE~~~La~El~~~~~~L~~lE~~k~~l~~~~~~~~ee~~~L~eln~sS~~~i~~L~~Ei~~lke~~~ 550 (1756)
.-..|..+..++.+..+.|..|+....++|.+++--+.-|...+....-......--|+. ..-..|-..+..++....
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~--~ere~lV~qLEk~~~q~~ 143 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFP--HEREDLVEQLEKLREQIE 143 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccc--hHHHHHHHHHHHHHHHHH
Confidence 445677888999999999999999999999998888877887777666555444433433 455667777788888888
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 045448 551 KLEKEIALQEDKSNALQLEVRHLKEEIMGLSRRYQALVEQVLSVGLNPEHLGSAVKELQEENSKLKEVCKEQGDEKEVLH 630 (1756)
Q Consensus 551 ~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln~~~~~l~E~~~s~~l~~~s~~~~i~~Lq~en~kLkE~~~~~~~Ek~~l~ 630 (1756)
.|+.++.--+++++.+-.|--..+.-..-||. |..-.+|=++..+. =|-.|=.||--|+|-+.....|++.+.
T Consensus 144 qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~------ELn~~L~g~~~riv-DIDaLi~ENRyL~erl~q~qeE~~l~k 216 (319)
T PF09789_consen 144 QLERDLQSLLDEKEELVTERDAYKCKAHRLNH------ELNYILNGDENRIV-DIDALIMENRYLKERLKQLQEEKELLK 216 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhCCCCCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887777777777777765 33444444444444 468888999999999999999999987
Q ss_pred HHHHhHhHHHH-H--HHHHH---------------HhHhh-----h-cccccchhhhHHHHHHHhhHHHHHHhhhhHHHH
Q 045448 631 EKLKNMDNLLK-K--NAALE---------------GSLSE-----M-NIKLEGSGERVNDLQKSCQFLREEKSSLVAEKA 686 (1756)
Q Consensus 631 ekl~~~e~L~~-k--~~~le---------------~sls~-----~-~~ele~lr~~vk~Lqe~~~~Lke~~s~~~sEK~ 686 (1756)
..+.---.+.+ + +..+. ++|.. . +..|-....++-||+--|..|-+.|+ +|.
T Consensus 217 ~~i~KYK~~le~k~~~~~~k~~~~~~~~~~~v~s~kQv~~ll~~~~~~~~~~~~~~s~sdLksl~~aLle~in----dK~ 292 (319)
T PF09789_consen 217 QTINKYKSALERKRKKGIIKLGNSASSNLTGVMSAKQVKELLESESNGCSLPASPQSISDLKSLATALLETIN----DKN 292 (319)
T ss_pred HHHHHHHHHHHhhccccccccCCCCCCcccccccHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHHhh----hHH
Confidence 77754333333 1 11110 11111 0 11233444577788888888877764 666
Q ss_pred HHHHHH
Q 045448 687 TLLSQL 692 (1756)
Q Consensus 687 aL~~ql 692 (1756)
..+.-+
T Consensus 293 ~al~Hq 298 (319)
T PF09789_consen 293 LALQHQ 298 (319)
T ss_pred HHHHHH
Confidence 666655
No 147
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.14 E-value=11 Score=45.85 Aligned_cols=106 Identities=21% Similarity=0.180 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 045448 270 STLEKMIIQAQEDSKGLNERASKAEIEAQKLKQELSRLENEKEAGL-----LQYKQCLEMIYALESKISLAEENAGMLNE 344 (1756)
Q Consensus 270 S~LE~~Ls~AQeelk~L~ERa~kAE~Ele~LKqeL~~lEaEkEa~l-----lQykQ~lEkIseLEkKIs~lEe~v~slnq 344 (1756)
......-..++.++..|..+...++.++..|+++++.......... .....+..++-.+..++..++-++++...
T Consensus 75 ~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lD 154 (319)
T PF09789_consen 75 SESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLD 154 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555566666666666665443322211 11334445556666777777777777777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHhhH
Q 045448 345 QTEKAETEVKALKQALTGLNEEKEAIAFRYD 375 (1756)
Q Consensus 345 rierle~Ei~~LkqEL~~LeeEKeal~l~y~ 375 (1756)
+.+.+..|.+..+....+|+.|---++-.+.
T Consensus 155 EkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~ 185 (319)
T PF09789_consen 155 EKEELVTERDAYKCKAHRLNHELNYILNGDE 185 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 7777777777777777777665544444433
No 148
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.13 E-value=0.44 Score=53.45 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHH
Q 045448 35 KLVEEFYRAYRALAERYDNATGEL 58 (1756)
Q Consensus 35 ~~vee~~r~yr~Laeryd~~~~el 58 (1756)
....++|.+|.-|++|-+.+..+-
T Consensus 17 ~~~~~li~ay~~L~d~~~~l~~~~ 40 (194)
T PF08614_consen 17 KAFAELIDAYNRLADRTSLLKAEN 40 (194)
T ss_dssp ------------------------
T ss_pred cccccccccccccccccccccccc
Confidence 344578999999999988776653
No 149
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.11 E-value=18 Score=43.90 Aligned_cols=120 Identities=25% Similarity=0.331 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHhHH-HHHHHHHHHhHhhhcccccchhhhHHHHHHHhhHHHHHHhhhhHH
Q 045448 606 KELQEENSKLKEVCKEQGDEKEVLHEKLKNMDNL-LKKNAALEGSLSEMNIKLEGSGERVNDLQKSCQFLREEKSSLVAE 684 (1756)
Q Consensus 606 ~~Lq~en~kLkE~~~~~~~Ek~~l~ekl~~~e~L-~~k~~~le~sls~~~~ele~lr~~vk~Lqe~~~~Lke~~s~~~sE 684 (1756)
..+....-.|.+....+..+...|.....+++.. -.+...+...|..+..++...+..+..|+.....+...+.....+
T Consensus 173 ~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~ 252 (325)
T PF08317_consen 173 EQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQ 252 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555556655 566888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhhhhhHHHHHHHHhHHHHHH
Q 045448 685 KATLLSQLQIMTENMQKLLEKNVTLEHSLAGANVELEGLRAKSKSLEDFCR 735 (1756)
Q Consensus 685 K~aL~~qlq~~~~~m~kLlEkns~LE~SLSd~n~ELe~lR~K~K~lEEscq 735 (1756)
|..+..++ ...++..+++. .-...|+..|+.++..||..++
T Consensus 253 k~~l~~eI----~e~~~~~~~~r------~~t~~Ev~~Lk~~~~~Le~~~g 293 (325)
T PF08317_consen 253 KQELLAEI----AEAEKIREECR------GWTRSEVKRLKAKVDALEKLTG 293 (325)
T ss_pred HHHHHHHH----HHHHHHHHHhc------CCCHHHHHHHHHHHHHHHHHHC
Confidence 99999999 33444444332 2245688899999998886653
No 150
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.81 E-value=6.8 Score=41.71 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=10.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Q 045448 281 EDSKGLNERASKAEIEAQKLKQELS 305 (1756)
Q Consensus 281 eelk~L~ERa~kAE~Ele~LKqeL~ 305 (1756)
.++..+......+...+..++..+.
T Consensus 10 ~e~~~~~~~~~~~~~~~~~~~~dl~ 34 (132)
T PF07926_consen 10 SELQRLKEQEEDAEEQLQSLREDLE 34 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443
No 151
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.74 E-value=5.1 Score=45.69 Aligned_cols=107 Identities=27% Similarity=0.357 Sum_probs=87.4
Q ss_pred HHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhhhhhHHHHHHHHhHHHHHHHHHhhhhhhhhhHHHHHhhH
Q 045448 676 EEKSSLVAEKATLLSQLQIMTENMQKLLEKNVTLEHSLAGANVELEGLRAKSKSLEDFCRMLKNEKSNLLNERSTLVSQL 755 (1756)
Q Consensus 676 e~~s~~~sEK~aL~~qlq~~~~~m~kLlEkns~LE~SLSd~n~ELe~lR~K~K~lEEscq~l~~ekS~L~~Ek~~L~SQL 755 (1756)
+.|..+..|-+.+-.+.+...+.|..+..+|.-|=--|..+..|.+.||.+++..+--..+|.+ +-+.+
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~-----------~k~rl 95 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQN-----------LKARL 95 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH
Confidence 3445555555555567777778899999999999999999999999999999988877777644 34556
Q ss_pred HHHHHHHHHHHHHHhHHhHhhhhhHHHHhHhHHHHHHH
Q 045448 756 EDVEKRLGNLERRFTKLEEKYADIEREKESTLSQVEEL 793 (1756)
Q Consensus 756 ~~~t~~l~~Le~k~t~LE~~~s~~~~Eke~~~~qv~~L 793 (1756)
..++..+.+|.-.|..|+.++..+..|++.++.+....
T Consensus 96 ~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~ 133 (201)
T PF13851_consen 96 KELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESA 133 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999887544
No 152
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=93.57 E-value=20 Score=42.58 Aligned_cols=133 Identities=17% Similarity=0.200 Sum_probs=84.6
Q ss_pred HHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhhhHHHHHH
Q 045448 409 LRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQTLQKLHSQSQHEQKA 488 (1756)
Q Consensus 409 le~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~~Le~l~sqsQeE~~~ 488 (1756)
+..+.+++.-|.+.|..|...|.+....-....+.+-+++.-+...-+.+..=..+. ..+++.|+..
T Consensus 8 l~el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~-------------l~~ak~eLqe 74 (258)
T PF15397_consen 8 LQELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQ-------------LQQAKAELQE 74 (258)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHH-------------HHHHHHHHHH
Confidence 566777888899999999999999999999999999998887776666655433321 1223333333
Q ss_pred HHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHhhhc----ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 489 LTLELQNKLQKMKDMEVCNHDLEEGIEQVKRENQSLVELNS----SSTITIQNLQNEIFNLKEMKEKLEKEIA 557 (1756)
Q Consensus 489 La~El~~~~~~L~~lE~~k~~l~~~~~~~~ee~~~L~eln~----sS~~~i~~L~~Ei~~lke~~~~LE~Ev~ 557 (1756)
... ....+++.|+.....+..++....++++.|.--.. -=...|-+|...|.++++.+..=-.++.
T Consensus 75 ~ee---k~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~ 144 (258)
T PF15397_consen 75 WEE---KEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELN 144 (258)
T ss_pred HHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 23344556666666666777777777766642221 1123666777777777765554333333
No 153
>PRK11281 hypothetical protein; Provisional
Probab=93.43 E-value=49 Score=46.59 Aligned_cols=39 Identities=18% Similarity=0.111 Sum_probs=25.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 421 RANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQ 459 (1756)
Q Consensus 421 ~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~Iq 459 (1756)
..|..|-..+.+..+++..+.++-...++.++.+.....
T Consensus 285 ~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~ 323 (1113)
T PRK11281 285 EINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSER 323 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777766666666655555444
No 154
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=92.82 E-value=15 Score=39.14 Aligned_cols=86 Identities=15% Similarity=0.206 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 329 ESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEK 408 (1756)
Q Consensus 329 EkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~k 408 (1756)
..++..+...+.....++..+..++..........+..=+.=+.........|..+..++..++..+..++.+.+.+...
T Consensus 9 ~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~ 88 (132)
T PF07926_consen 9 QSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAE 88 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333322232333334456667777777777777777777777777777
Q ss_pred HHHHHH
Q 045448 409 LRTSEQ 414 (1756)
Q Consensus 409 le~lEe 414 (1756)
+...+.
T Consensus 89 l~~~e~ 94 (132)
T PF07926_consen 89 LEESEA 94 (132)
T ss_pred HHHHHH
Confidence 666655
No 155
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=92.74 E-value=15 Score=43.15 Aligned_cols=133 Identities=20% Similarity=0.221 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 327 ALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGA 406 (1756)
Q Consensus 327 eLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~ 406 (1756)
.|+.++..+++....+..+.+++..|...++.. .-.+|-|.-..++.|+..+++...--+.+..-|-.++
T Consensus 49 elesqL~q~etrnrdl~t~nqrl~~E~e~~Kek----------~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLE 118 (333)
T KOG1853|consen 49 ELESQLDQLETRNRDLETRNQRLTTEQERNKEK----------QEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELE 118 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666666666555444 4567888888899999998887666555554433332
Q ss_pred ---HHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhhhH
Q 045448 407 ---EKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQTLQKLHSQSQ 483 (1756)
Q Consensus 407 ---~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~~Le~l~sqsQ 483 (1756)
..++.++.. -.=.++++...+.+--++++.++.+|.+|+.-++..+ -+.
T Consensus 119 QaNDdLErakRa---ti~sleDfeqrLnqAIErnAfLESELdEke~llesvq-------------------------RLk 170 (333)
T KOG1853|consen 119 QANDDLERAKRA---TIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQ-------------------------RLK 170 (333)
T ss_pred HhccHHHHhhhh---hhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-------------------------HHH
Confidence 233333321 1124667788888888899999999998887544433 245
Q ss_pred HHHHHHHHHHHHHH
Q 045448 484 HEQKALTLELQNKL 497 (1756)
Q Consensus 484 eE~~~La~El~~~~ 497 (1756)
+|++.|-+||.-..
T Consensus 171 dEardlrqelavr~ 184 (333)
T KOG1853|consen 171 DEARDLRQELAVRT 184 (333)
T ss_pred HHHHHHHHHHHHHH
Confidence 67777777776544
No 156
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=92.56 E-value=27 Score=41.21 Aligned_cols=39 Identities=18% Similarity=0.100 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 045448 318 YKQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKAL 356 (1756)
Q Consensus 318 ykQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~L 356 (1756)
|.|.-..++.|+..++.+......+...+-.++.--+.|
T Consensus 86 ~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdL 124 (333)
T KOG1853|consen 86 RVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDL 124 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 455566677777777766555555444444443333333
No 157
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.34 E-value=25 Score=40.30 Aligned_cols=133 Identities=22% Similarity=0.277 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHhhhhcHHHHHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 045448 240 EVKVLKEALIRLEAERDAGLLQYNHCLERISTLEKMIIQAQEDSKGLNERASKAEIEAQKLKQELSRLENEKEAGLLQYK 319 (1756)
Q Consensus 240 EIqsLKetLakLEsekdasllQyqq~lErLS~LE~~Ls~AQeelk~L~ERa~kAE~Ele~LKqeL~~lEaEkEa~llQyk 319 (1756)
-|++|++.++.+... ....+..+..+..+...+.+-+.+|+.++..|+..+..++..+.. +.
T Consensus 28 lIksLKeei~emkk~--------------e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~----L~ 89 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKK--------------EERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQS----LQ 89 (201)
T ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 467777777666544 223455566667777788888999999999999999988876554 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHH
Q 045448 320 QCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRY-DQCLDKIAQMESEIFNAQEHAKQ 397 (1756)
Q Consensus 320 Q~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y-~q~lekIseLE~ELseaeeev~r 397 (1756)
....++..++.++..+.-.-..+.+++.+++.|.+.|.... .+.+.++ +.+.-+.--||.++....+.++.
T Consensus 90 ~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf-------~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~ 161 (201)
T PF13851_consen 90 NLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKF-------ESAIQEVQQKTGLKNLLLEKKLQALSEQLEK 161 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777777777777777777777777665 1222222 33444444455554444444333
No 158
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=92.30 E-value=19 Score=45.71 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 045448 196 EAEKEAILMQYQQSLQKFSSLERELNHAQKD 226 (1756)
Q Consensus 196 QTEKE~LesQyEe~keKLsElEkEIse~QKe 226 (1756)
..-.+++..+..+...++.+.|..+..++..
T Consensus 160 ~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~ 190 (498)
T TIGR03007 160 DSAQRFIDEQIKTYEKKLEAAENRLKAFKQE 190 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666666677777777777777666544
No 159
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=92.22 E-value=33 Score=44.65 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=18.3
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 420 ERANHSLQVEAESLVQKIAIKDQELSQKQR 449 (1756)
Q Consensus 420 e~ele~Lq~Ele~l~eKIs~lerEL~eKqe 449 (1756)
+..+..++.++..+..++.....+|+.++.
T Consensus 345 ~~~le~L~~el~~l~~~l~~~a~~Ls~~R~ 374 (563)
T TIGR00634 345 DESLEALEEEVDKLEEELDKAAVALSLIRR 374 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666544
No 160
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=92.18 E-value=17 Score=48.52 Aligned_cols=77 Identities=14% Similarity=0.034 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHHHh-hHHHHHHHHHHHHHHHHHhhhhcHHHHHh
Q 045448 188 LKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLDERAS-KADIEVKVLKEALIRLEAERDAGLLQYNH 264 (1756)
Q Consensus 188 LQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~eRA~-kAE~EIqsLKetLakLEsekdasllQyqq 264 (1756)
+..+......-.+++..++.....++...|.++..++..-.-+..... ..+..+..+...+..++.++.+.-.+|..
T Consensus 185 ~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~ 262 (754)
T TIGR01005 185 GAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADS 262 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677888989999999999999888888876544332111 12244555555555555543333333333
No 161
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=92.14 E-value=42 Score=42.48 Aligned_cols=12 Identities=17% Similarity=0.293 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 045448 324 MIYALESKISLA 335 (1756)
Q Consensus 324 kIseLEkKIs~l 335 (1756)
+|+++...+..+
T Consensus 95 ~I~~~~~~l~~l 106 (420)
T COG4942 95 QIADLNARLNAL 106 (420)
T ss_pred hHHHHHHHHHHH
Confidence 333333333333
No 162
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=92.09 E-value=35 Score=41.53 Aligned_cols=142 Identities=21% Similarity=0.253 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 375 DQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENL 454 (1756)
Q Consensus 375 ~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~L 454 (1756)
...-.|+..||.+-.....++..|..+....+.+...+-..| -+++.....++..+.+.|+.+..+...-|+|+.+|
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dc---v~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~L 239 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDC---VKQLSEANQQIASLSEELARKTEENRRQQEEITSL 239 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHH---HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555444444444433333333 23566666666667777777777777777777777
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHh
Q 045448 455 QASLQDEQSRFAQVEVTLQTLQKLHSQSQHEQKALTLELQNKLQKMKDMEVCNHDLEEGIEQVKRENQSLVE 526 (1756)
Q Consensus 455 qs~IqdE~~K~~q~E~al~~Le~l~sqsQeE~~~La~El~~~~~~L~~lE~~k~~l~~~~~~~~ee~~~L~e 526 (1756)
.+.|-+-..|+.+.=+----|......+++=.+.|+.| |.+|+-.-.+-..++++..+++++|+.
T Consensus 240 lsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aE-------L~elqdkY~E~~~mL~EaQEElk~lR~ 304 (306)
T PF04849_consen 240 LSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAE-------LQELQDKYAECMAMLHEAQEELKTLRK 304 (306)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 77766655554432222112222222223333333333 333333444445555555555555543
No 163
>PRK11281 hypothetical protein; Provisional
Probab=92.08 E-value=72 Score=45.07 Aligned_cols=13 Identities=23% Similarity=0.307 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHH
Q 045448 241 VKVLKEALIRLEA 253 (1756)
Q Consensus 241 IqsLKetLakLEs 253 (1756)
++.+++++..++.
T Consensus 62 ~~~l~~tL~~L~q 74 (1113)
T PRK11281 62 QQDLEQTLALLDK 74 (1113)
T ss_pred HHHHHHHHHHHHH
Confidence 5667777766653
No 164
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.06 E-value=28 Score=43.73 Aligned_cols=132 Identities=18% Similarity=0.238 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhh---hh
Q 045448 429 EAESLVQKIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQTLQKLHSQSQHEQKALTLELQNKLQKMKDM---EV 505 (1756)
Q Consensus 429 Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~~Le~l~sqsQeE~~~La~El~~~~~~L~~l---E~ 505 (1756)
+.+.|.-+++.++.+-.+.+..+-+|++.++. ||-+.+.....|..+ ..
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dk----------------------------laee~qr~sd~LE~lrlql~ 349 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADK----------------------------LAEEDQRSSDLLEALRLQLI 349 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HhhhhhhHHHHHHHHHHHHH
Confidence 34555666667777777777777777766654 111111111111111 22
Q ss_pred hhHhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHHHHhhhhHHH
Q 045448 506 CNHDLEEGIEQVKRENQSLVELNSSSTITIQNLQNEIFNLKEMKEKLEKE-IALQEDKSNALQLEVRHLKEEIMGLSRRY 584 (1756)
Q Consensus 506 ~k~~l~~~~~~~~ee~~~L~eln~sS~~~i~~L~~Ei~~lke~~~~LE~E-v~~~v~~~~~LQ~Ei~~~KeE~~~Ln~~~ 584 (1756)
+.|+++.++..+ ...+++=+-++++.|-.|-.++..++..+..++.= +|.--..--.|.+++.++|-.+..|..++
T Consensus 350 ~eq~l~~rm~d~---Lrrfq~ekeatqELieelrkelehlr~~kl~~a~p~rgrsSaRe~eleqevkrLrq~nr~l~eqn 426 (502)
T KOG0982|consen 350 CEQKLRVRMNDI---LRRFQEEKEATQELIEELRKELEHLRRRKLVLANPVRGRSSAREIELEQEVKRLRQPNRILSEQN 426 (502)
T ss_pred HHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHhccccchhhhhh
Confidence 234444433322 12244445556666777777777777655555521 11112344457777777777776666554
Q ss_pred HHHHHHH
Q 045448 585 QALVEQV 591 (1756)
Q Consensus 585 ~~l~E~~ 591 (1756)
..+.-++
T Consensus 427 eelngti 433 (502)
T KOG0982|consen 427 EELNGTI 433 (502)
T ss_pred hhhhhhh
Confidence 4444444
No 165
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.64 E-value=36 Score=40.72 Aligned_cols=48 Identities=25% Similarity=0.374 Sum_probs=25.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 045448 178 EDKADSELETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQK 225 (1756)
Q Consensus 178 ~~eaEeEIdeLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QK 225 (1756)
+...+.++..++.....++++++.+..+.+....+..+...++...+.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~ 80 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKA 80 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666655555555544444444444433333
No 166
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=91.55 E-value=90 Score=45.10 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 431 ESLVQKIAIKDQELSQKQRELENL 454 (1756)
Q Consensus 431 e~l~eKIs~lerEL~eKqeE~e~L 454 (1756)
+.+..+|....++|.....++..+
T Consensus 924 eel~a~L~e~r~rL~~l~~el~~~ 947 (1353)
T TIGR02680 924 DEIRARLAETRAALASGGRELPRL 947 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444333333
No 167
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=91.50 E-value=24 Score=44.83 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHHH
Q 045448 466 AQVEVTLQTLQKLHSQSQHEQKALT 490 (1756)
Q Consensus 466 ~q~E~al~~Le~l~sqsQeE~~~La 490 (1756)
-..+..+..|+.-+...+.-...+.
T Consensus 351 ~~~~~el~~L~Re~~~~~~~Y~~l~ 375 (498)
T TIGR03007 351 PEVEAELTQLNRDYEVNKSNYEQLL 375 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444
No 168
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.22 E-value=57 Score=42.19 Aligned_cols=116 Identities=22% Similarity=0.309 Sum_probs=70.9
Q ss_pred hHHHHhHhHHHHHHHHHHHHHHHHHHHh---hhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 779 IEREKESTLSQVEELRYSLTNEQLERAN---YVQSSESRMVDLESLVHQLQEETTLRKKEFEEELDKAVKAQVEIFILQK 855 (1756)
Q Consensus 779 ~~~Eke~~~~qv~~L~~~L~~e~e~~~~---~~~s~e~~l~~le~~i~~Lqee~~~~~~e~e~e~~k~~~aq~ei~ilq~ 855 (1756)
+..+++.+.-|.-.|++.|...|+.... .+++..+- -+--.+.|..+|..-+.+.-+..+| |.+
T Consensus 596 ~dk~~e~l~~~ilklksllstkreqi~tlrtvlkankqt---aevaltnlksKYEnEK~mvtetm~K----------lRn 662 (772)
T KOG0999|consen 596 ADKDKEALMEQILKLKSLLSTKREQITTLRTVLKANKQT---AEVALTNLKSKYENEKAMVTETMDK----------LRN 662 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHhHhhhhhHHHHHHHHHHH----------HHH
Confidence 3567778888888888888888887543 34444332 3445666777777777666555555 333
Q ss_pred HHHHHHH-------hhhhhHHHhHHHHHhhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 856 FIKDLEE-------KNLSLLIECQKHVEASKLSDKLIAELESENLEQQVETEFLLDELEKLRTGIYQVF 917 (1756)
Q Consensus 856 ~l~d~ee-------kn~sLl~ecqk~~e~~k~se~~iseLE~e~~~~q~e~~~l~~~~~~lr~gi~qv~ 917 (1756)
-|.-+++ ....+.+-|..++. .+.+|..+..--..+.+.| |+-||+.|.|-+
T Consensus 663 ELk~Lkedaatfsslramf~~R~ee~~t-------q~de~~~ql~aaedekKtl---n~llrmaiqqkl 721 (772)
T KOG0999|consen 663 ELKALKEDAATFSSLRAMFAARCEEYVT-------QLDELQRQLAAAEDEKKTL---NQLLRMAIQQKL 721 (772)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHH-------HHHHHHHHHHhhhhHHHHH---HHHHHHHHHHHH
Confidence 3333433 44445555666543 3445555555556666665 567888888743
No 169
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=91.12 E-value=53 Score=41.63 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=20.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 045448 177 AEDKADSELETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQ 224 (1756)
Q Consensus 177 r~~eaEeEIdeLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~Q 224 (1756)
|......+|..+...|...+.+...++.++......+..++.++...+
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~ 86 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETA 86 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443333333333333333
No 170
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.04 E-value=7.8 Score=41.18 Aligned_cols=45 Identities=18% Similarity=0.319 Sum_probs=37.1
Q ss_pred HhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 416 CVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQD 460 (1756)
Q Consensus 416 ~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~Iqd 460 (1756)
+..|+.++..++..|+.+++-++.+..++.+.+..+.-++.+...
T Consensus 70 ~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~ 114 (120)
T PF12325_consen 70 VEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYRE 114 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 334666888999999999999999999999999988888777654
No 171
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=91.01 E-value=16 Score=44.43 Aligned_cols=44 Identities=23% Similarity=0.435 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHH
Q 045448 434 VQKIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQTLQK 477 (1756)
Q Consensus 434 ~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~~Le~ 477 (1756)
...|..+..++.+++.++..+...|.....+..+...+...+++
T Consensus 217 ~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 217 LQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444444444444
No 172
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=90.99 E-value=81 Score=43.54 Aligned_cols=107 Identities=19% Similarity=0.218 Sum_probs=59.5
Q ss_pred HHHHHHhhHHhhhh--hhhhhhHHHHHHHHhHHHHHHHHHhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHhHHhHhhhh
Q 045448 701 KLLEKNVTLEHSLA--GANVELEGLRAKSKSLEDFCRMLKNEKSNLLNERSTLVSQLEDVEKRLGNLERRFTKLEEKYAD 778 (1756)
Q Consensus 701 kLlEkns~LE~SLS--d~n~ELe~lR~K~K~lEEscq~l~~ekS~L~~Ek~~L~SQL~~~t~~l~~Le~k~t~LE~~~s~ 778 (1756)
+..-++++.-+.+. +.+.....++.-.-++++.-....++.-+|.+|-..+=+++--..+...+....+...-..++
T Consensus 596 ~~i~~S~ygs~~v~~~~~~lk~~~f~~~~~~l~~~~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~- 674 (1072)
T KOG0979|consen 596 KSIKKSAYGSRQVITRNDPLKSRNFFSVSPVLEELDNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLK- 674 (1072)
T ss_pred hhhhhhccccceeeecCCcchhhhhhccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 44556666655543 345677777777777777776666665555555444444444444444333333333333333
Q ss_pred hHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHH
Q 045448 779 IEREKESTLSQVEELRYSLTNEQLERANYVQSSESRMVDLESLVHQL 825 (1756)
Q Consensus 779 ~~~Eke~~~~qv~~L~~~L~~e~e~~~~~~~s~e~~l~~le~~i~~L 825 (1756)
.+.-++-++.+.++.-+++...+|.++..|
T Consensus 675 -----------------~~~~er~~~~~~~~~~~~r~~~ie~~~~~l 704 (1072)
T KOG0979|consen 675 -----------------LLKRERTKLNSELKSYQQRKERIENLVVDL 704 (1072)
T ss_pred -----------------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666666665555
No 173
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=90.31 E-value=23 Score=44.47 Aligned_cols=94 Identities=21% Similarity=0.248 Sum_probs=57.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhc-HHHHHhhHHHHHHHHHHHHHHHHHhhh
Q 045448 178 EDKADSELETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGG-LDERASKADIEVKVLKEALIRLEAERD 256 (1756)
Q Consensus 178 ~~eaEeEIdeLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~E-L~eRA~kAE~EIqsLKetLakLEsekd 256 (1756)
...+.+++..++.....|+..++.++.+|..-..-+.+.=.+-....+.+.+ +.+...-..+||-.|+..|+..+++
T Consensus 214 l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK-- 291 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEK-- 291 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--
Confidence 5667888888888888888888888887765544444322222222222222 2233334567888888888888876
Q ss_pred hcHHHHHhHHHHHHHHHHHHH
Q 045448 257 AGLLQYNHCLERISTLEKMII 277 (1756)
Q Consensus 257 asllQyqq~lErLS~LE~~Ls 277 (1756)
.+|+ +.+|.-++.+.+.
T Consensus 292 ---~~Yq-s~eRaRdi~E~~E 308 (395)
T PF10267_consen 292 ---MAYQ-SYERARDIWEVME 308 (395)
T ss_pred ---HHHH-HHHHHhHHHHHHH
Confidence 5565 3344444444444
No 174
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=89.91 E-value=47 Score=39.13 Aligned_cols=60 Identities=25% Similarity=0.379 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHH
Q 045448 182 DSELETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLDERASKADIEVKVLKEAL 248 (1756)
Q Consensus 182 EeEIdeLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~eRA~kAE~EIqsLKetL 248 (1756)
+..+..+...+...... +...+..+..++.++.....++..+..++..+......+....
T Consensus 23 ~~~~e~~~~~L~~~~~~-------~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t 82 (264)
T PF06008_consen 23 LSSIEDLTNQLRSYRSK-------LNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNT 82 (264)
T ss_pred HHHHHHHHHHHHHHhcc-------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444333 3334444444444555555555555544444444444443333
No 175
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=89.85 E-value=14 Score=41.04 Aligned_cols=59 Identities=24% Similarity=0.222 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHH
Q 045448 382 AQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIK 440 (1756)
Q Consensus 382 seLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~l 440 (1756)
...+.++.........+..++..+..++...+..+..+...+..++..++.+.++++..
T Consensus 126 ~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 184 (191)
T PF04156_consen 126 KSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQEL 184 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444434444444433344444444444444444444443
No 176
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=89.73 E-value=36 Score=45.68 Aligned_cols=9 Identities=0% Similarity=-0.145 Sum_probs=3.9
Q ss_pred HhhhhchHH
Q 045448 25 MYYKKRPEL 33 (1756)
Q Consensus 25 myy~~Rp~l 33 (1756)
..+++|+-.
T Consensus 12 il~rr~~~i 20 (754)
T TIGR01005 12 SLARNWLLI 20 (754)
T ss_pred HHHHHHHHH
Confidence 344444433
No 177
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=89.67 E-value=56 Score=40.85 Aligned_cols=38 Identities=11% Similarity=0.141 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 045448 191 TLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAG 228 (1756)
Q Consensus 191 kI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~ 228 (1756)
.......-.+|+..+..+...++...|..+...+..-.
T Consensus 165 ~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~ 202 (444)
T TIGR03017 165 KVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKG 202 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34455566788999999999999998888888887654
No 178
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=89.54 E-value=33 Score=43.87 Aligned_cols=104 Identities=21% Similarity=0.265 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 318 YKQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQ 397 (1756)
Q Consensus 318 ykQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~r 397 (1756)
|..|..++.++..+++..++.+++.+.++.+ +..++ +.|.+.|-.++..+..
T Consensus 200 y~~~~KelrdtN~q~~s~~eel~~kt~el~~-------q~Ee~---------------------skLlsql~d~qkk~k~ 251 (596)
T KOG4360|consen 200 YGDCVKELRDTNTQARSGQEELQSKTKELSR-------QQEEN---------------------SKLLSQLVDLQKKIKY 251 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH---------------------HHHHHHHHhhHHHHHH
Confidence 5555555555555555555555554444444 33333 6666777777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 398 LNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQA 456 (1756)
Q Consensus 398 Ln~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs 456 (1756)
+.-+.+.+..-+....+ .-..++.|++.+.++-+...+.+-+.++|++.|.+
T Consensus 252 ~~~Ekeel~~~Lq~~~d-------a~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 252 LRHEKEELDEHLQAYKD-------AQRQLTAELEELEDKYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred HHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 88888888888888887 44455555566666666666666666666665544
No 179
>PF13514 AAA_27: AAA domain
Probab=89.34 E-value=1.2e+02 Score=42.94 Aligned_cols=96 Identities=21% Similarity=0.200 Sum_probs=53.5
Q ss_pred HHHHhhHHhhhhhhhhhhHHHHHHHHhHHHHHHHHHhhhhhhhhhH--------HHHHhhHHHHHHHHHHHHHHHhHHhH
Q 045448 703 LEKNVTLEHSLAGANVELEGLRAKSKSLEDFCRMLKNEKSNLLNER--------STLVSQLEDVEKRLGNLERRFTKLEE 774 (1756)
Q Consensus 703 lEkns~LE~SLSd~n~ELe~lR~K~K~lEEscq~l~~ekS~L~~Ek--------~~L~SQL~~~t~~l~~Le~k~t~LE~ 774 (1756)
..+..-|+..+..+..+++.+..+....++....+...-.....+. ..+...++.+. .+.........++.
T Consensus 672 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~~~~~~l~~l~-~l~~~~~~~~~~~~ 750 (1111)
T PF13514_consen 672 AARREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALAELGLPADASPEEALEALELLE-ELREALAEIRELRR 750 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 4444444555555555666666666666655555555555333332 22223333222 35555566667777
Q ss_pred hhhhhHHHHhHhHHHHHHHHHHHHH
Q 045448 775 KYADIEREKESTLSQVEELRYSLTN 799 (1756)
Q Consensus 775 ~~s~~~~Eke~~~~qv~~L~~~L~~ 799 (1756)
++..+..+......+|..|-..+..
T Consensus 751 ri~~~~~~~~~f~~~~~~L~~~l~~ 775 (1111)
T PF13514_consen 751 RIEQMEADLAAFEEQVAALAERLGP 775 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 7777777777777777777555433
No 180
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=89.31 E-value=48 Score=38.41 Aligned_cols=68 Identities=13% Similarity=0.189 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHH
Q 045448 319 KQCLEMIYALESKISLA----EENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMES 386 (1756)
Q Consensus 319 kQ~lEkIseLEkKIs~l----Ee~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ 386 (1756)
.++..-|..++..|..+ +.........+.++..+.+.+...+.+++.-=..+.-+|.++..-|..+-.
T Consensus 40 ~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~ 111 (207)
T PF05010_consen 40 QEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKK 111 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433 333344455566666677777777766666666666666666655555433
No 181
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.89 E-value=7.9 Score=48.53 Aligned_cols=81 Identities=17% Similarity=0.239 Sum_probs=61.2
Q ss_pred hhhHHHHHHHHhHHHHHHHHHhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHhHHhHhhhhhHHHHhHhHHHHHHHHHHH
Q 045448 718 VELEGLRAKSKSLEDFCRMLKNEKSNLLNERSTLVSQLEDVEKRLGNLERRFTKLEEKYADIEREKESTLSQVEELRYSL 797 (1756)
Q Consensus 718 ~ELe~lR~K~K~lEEscq~l~~ekS~L~~Ek~~L~SQL~~~t~~l~~Le~k~t~LE~~~s~~~~Eke~~~~qv~~L~~~L 797 (1756)
++|++.|.....+-.-+..+..+.+++.++|-.+.+-++-.+.+++++.++...+.+-.-.+....+.-..+++++..++
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~ 426 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEERE 426 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 59999999999999899999999999999988877777777777777777776666555555666666666666655443
Q ss_pred H
Q 045448 798 T 798 (1756)
Q Consensus 798 ~ 798 (1756)
.
T Consensus 427 ~ 427 (493)
T KOG0804|consen 427 K 427 (493)
T ss_pred H
Confidence 3
No 182
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=88.82 E-value=22 Score=41.90 Aligned_cols=76 Identities=33% Similarity=0.376 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 045448 293 AEIEAQKLKQELSRLENEKEAGLLQYKQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKE 368 (1756)
Q Consensus 293 AE~Ele~LKqeL~~lEaEkEa~llQykQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKe 368 (1756)
|+.+-..|...|..++.+...+...+....+++..|+.+...++.....+......++.+...|........++|.
T Consensus 3 aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~ 78 (246)
T PF00769_consen 3 AEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKE 78 (246)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555554444444555566777777777777777766666666666666666665544444443
No 183
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=88.79 E-value=20 Score=42.27 Aligned_cols=118 Identities=20% Similarity=0.282 Sum_probs=66.1
Q ss_pred HHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHH
Q 045448 355 ALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLV 434 (1756)
Q Consensus 355 ~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~ 434 (1756)
.|...|..++++....-..-...-+++..|+.+...+++....|......+......++........+...|..++....
T Consensus 9 Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~ 88 (246)
T PF00769_consen 9 ELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAE 88 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333455566677777777777777777777666666666666665666667777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHH
Q 045448 435 QKIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTL 472 (1756)
Q Consensus 435 eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al 472 (1756)
..|..+..+...+..|...|+..+..=......+-..+
T Consensus 89 ~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 89 AEIARLEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888877788888777776655444444333333
No 184
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=88.31 E-value=47 Score=37.94 Aligned_cols=96 Identities=17% Similarity=0.242 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHH--HHHHHHHHH--HHHHHHHH
Q 045448 319 KQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQC--LDKIAQMES--EIFNAQEH 394 (1756)
Q Consensus 319 kQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~--lekIseLE~--ELseaeee 394 (1756)
..++.++..++..+..++..+..+...+.+++..+..++..|..+...++.+..+++-. ..++...-. -+..+...
T Consensus 87 r~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~ 166 (221)
T PF04012_consen 87 REALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDS 166 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHH
Confidence 45666667777777777777777777777777777777777777777777777766522 222221111 03455566
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045448 395 AKQLNSEILMGAEKLRTSEQ 414 (1756)
Q Consensus 395 v~rLn~EiE~l~~kle~lEe 414 (1756)
+.++...+...+........
T Consensus 167 ~er~e~ki~~~ea~a~a~~e 186 (221)
T PF04012_consen 167 FERMEEKIEEMEARAEASAE 186 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666555554
No 185
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=88.05 E-value=16 Score=43.38 Aligned_cols=99 Identities=21% Similarity=0.192 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHH---------HHHHHhhCCCcc--chHH
Q 045448 535 IQNLQNEIFNLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIMGLSRRYQAL---------VEQVLSVGLNPE--HLGS 603 (1756)
Q Consensus 535 i~~L~~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln~~~~~l---------~E~~~s~~l~~~--s~~~ 603 (1756)
-+.|..++.....+.--||.-+..--.....|.+++.+.|.|+.-....+.+. -.-+++..+.|. ...+
T Consensus 83 rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~s 162 (307)
T PF10481_consen 83 RQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSDS 162 (307)
T ss_pred HHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhhh
Confidence 33444444444444444444333333344455556666666654333211110 111334444454 2346
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 045448 604 AVKELQEENSKLKEVCKEQGDEKEVLHEKL 633 (1756)
Q Consensus 604 ~i~~Lq~en~kLkE~~~~~~~Ek~~l~ekl 633 (1756)
-..+|+..-.+=-|.-++++.|+-+|+.++
T Consensus 163 k~e~L~ekynkeveerkrle~e~k~lq~k~ 192 (307)
T PF10481_consen 163 KYEELQEKYNKEVEERKRLEAEVKALQAKK 192 (307)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHhccc
Confidence 678888877777777778888887777554
No 186
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.65 E-value=43 Score=45.17 Aligned_cols=33 Identities=15% Similarity=0.262 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 427 QVEAESLVQKIAIKDQELSQKQRELENLQASLQ 459 (1756)
Q Consensus 427 q~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~Iq 459 (1756)
..|++.+..++..+...|+..+...+..+..+.
T Consensus 638 ~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 638 KKELERMKDQLQDLKASIEQLKKKLDYQQRQIE 670 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444443333
No 187
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=87.37 E-value=39 Score=45.23 Aligned_cols=218 Identities=22% Similarity=0.268 Sum_probs=125.8
Q ss_pred HHHHHHHhhhHHHHhhhhhh-hHHHHHHHHhhccchhhhch--hhhhhHHHHHHHHHhhhhhhhcchhhhHHHHHHhhhh
Q 045448 1040 RLLYERFLGLKKEISALEEE-NIVLLQEALDLGNVSTVFKS--FGIEKAEEVKALFEDLNHLHMTNGELQGKVELLGRKL 1116 (1756)
Q Consensus 1040 ~sL~~~~~~l~e~~~~lede-n~~~l~E~~~~~~ls~~~~~--~~~e~~~~l~~l~~~~~~l~~~~~~L~~~v~~l~~kl 1116 (1756)
++|++++.-|..+.-.-|=. -.+=++.||++ |-.|..+ +-.|.+.+ |--|++-|.-|.+.+++|+..|
T Consensus 340 KYLLgELkaLVaeq~DsE~qRLitEvE~cisl--LPav~g~tniq~EIALA-------~QplrsENaqLrRrLrilnqql 410 (861)
T PF15254_consen 340 KYLLGELKALVAEQEDSEVQRLITEVEACISL--LPAVSGSTNIQVEIALA-------MQPLRSENAQLRRRLRILNQQL 410 (861)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHh--hhhhhccccchhhhHhh-------hhhhhhhhHHHHHHHHHHHHHH
Confidence 56777776666544222211 12223444443 4445443 45566665 4456777888899999999999
Q ss_pred hhHhHhh---hhhhHhHHHHHHHHHhhhchhhhhhhHHhhhchhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Q 045448 1117 EMKEAEG---LHLNETVDKLQKELHEVSDLNDQLNIQIFIGHDSLRQKASDLLEAEQKLKATHNLNVELCITVEDLKREC 1193 (1756)
Q Consensus 1117 ~~~e~e~---~~l~~~~~~~~~eL~~~~s~~~~l~~q~~~~~~~l~~k~~~lle~~~~~~~~~~~~~el~~~v~~l~~~~ 1193 (1756)
...|.-- --.-+.| ||-...|+|--|-.| |.|.-+-+..+|.+|.||-++++.++-+.
T Consensus 411 reqe~~~k~~~~~~~n~-----El~sLqSlN~~Lq~q--------------l~es~k~~e~lq~kneellk~~e~q~~En 471 (861)
T PF15254_consen 411 REQEKAEKTSGSQDCNL-----ELFSLQSLNMSLQNQ--------------LQESLKSQELLQSKNEELLKVIENQKEEN 471 (861)
T ss_pred HHHHhhcccCCCcccch-----hhHHHHHHHHHHHHH--------------HHHHHHhHHHHHHhHHHHHHHHHHHHHHH
Confidence 7654321 1111211 555666666555544 55666667788999999999999998776
Q ss_pred hHHHHHHHHHhHHHHHHhhhhhhhhHHHHhHHHhhHHHHHHHHHhHHHHHHHHhhhhhhchHHHhhhhhhhhhHHHHHHh
Q 045448 1194 DELKLIKENAEKRILEISRDCSKQERELECLQEVNKSLEAEVGILHDEIEEHRIREVYLSSELQERSNEFELWESEATSF 1273 (1756)
Q Consensus 1194 ~e~~~~~~~~e~~i~~ls~~~~~q~~ei~~l~e~n~~L~~e~~~l~~e~~~~~~re~~l~~el~~~~~e~~~~e~e~~~~ 1273 (1756)
..-+.+-.+-+..+++. ..-..-|+-.++-||++.-+.-+.+-.-|.
T Consensus 472 k~~~~~~~ekd~~l~~~-----------------kq~~d~e~~rik~ev~eal~~~k~~q~kLe---------------- 518 (861)
T PF15254_consen 472 KRLRKMFQEKDQELLEN-----------------KQQFDIETTRIKIEVEEALVNVKSLQFKLE---------------- 518 (861)
T ss_pred HHHHHHHHHHHHHHHhh-----------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----------------
Confidence 65444433333333332 222334445555555554444433321111
Q ss_pred hhhhhHhHHHHHHHHhHHHHHHHHhhhhcccccchhhhHHHHHHHhhhhhhhhhhhhhhcccch
Q 045448 1274 YFDLQMSSTREVLLENKVHELAEVCESLEDGSATKSLESKQMKERIGSLESEIGRLKSRLSSYD 1337 (1756)
Q Consensus 1274 ~~dlq~ssv~~~l~e~kv~El~~~c~~le~~~~~k~~~i~~lkerv~~lE~En~~Lk~~Lsay~ 1337 (1756)
++=-||+++ .+.--.||.+|.-|+|---.|..-.++|=.+|+.+.
T Consensus 519 ----------~sekEN~iL---------~itlrQrDaEi~RL~eLtR~LQ~Sma~lL~dls~D~ 563 (861)
T PF15254_consen 519 ----------ASEKENQIL---------GITLRQRDAEIERLRELTRTLQNSMAKLLSDLSVDS 563 (861)
T ss_pred ----------HHHhhhhHh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 111233332 333346788999999999899988888888777654
No 188
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=87.04 E-value=80 Score=40.97 Aligned_cols=37 Identities=16% Similarity=0.404 Sum_probs=29.1
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 419 LERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQ 455 (1756)
Q Consensus 419 Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lq 455 (1756)
|+....+++.++.-+-+.|..+..+|...+++++.|+
T Consensus 478 L~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 478 LETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345557778888888888888888888888888876
No 189
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=86.98 E-value=61 Score=36.85 Aligned_cols=160 Identities=22% Similarity=0.312 Sum_probs=102.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHhHHhHhhhhhHHHHhHhHHHHHH--H------HHHHHHHHHHHHhhhhhhHHHHHhHHHH
Q 045448 750 TLVSQLEDVEKRLGNLERRFTKLEEKYADIEREKESTLSQVEE--L------RYSLTNEQLERANYVQSSESRMVDLESL 821 (1756)
Q Consensus 750 ~L~SQL~~~t~~l~~Le~k~t~LE~~~s~~~~Eke~~~~qv~~--L------~~~L~~e~e~~~~~~~s~e~~l~~le~~ 821 (1756)
++||-|.+..+++..||=.-+.=|+++-.+..|--- +.+|-. - ...+...+..+..++.+.++|-.-||++
T Consensus 1 AvisALK~LQeKIrrLELER~qAe~nl~~LS~et~~-yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQ 79 (178)
T PF14073_consen 1 AVISALKNLQEKIRRLELERSQAEDNLKQLSRETSH-YKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQ 79 (178)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-hHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888888887777777777777665422 212110 0 1123444666777777777777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhhHHHhHHHHHhhhhhHHHHHHHhhhhhHHHHH
Q 045448 822 VHQLQEETTLRKKEFEEELDKAVKAQVEIFILQKFIKDLE---EKNLSLLIECQKHVEASKLSDKLIAELESENLEQQVE 898 (1756)
Q Consensus 822 i~~Lqee~~~~~~e~e~e~~k~~~aq~ei~ilq~~l~d~e---ekn~sLl~ecqk~~e~~k~se~~iseLE~e~~~~q~e 898 (1756)
+.....-..+.+.+.-.-+.+-+.++-|- +..-.++- +|-=.|=-||-+....-.+++..|..||....+.+-+
T Consensus 80 LeyMRkmv~~ae~er~~~le~q~~l~~e~---~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehq 156 (178)
T PF14073_consen 80 LEYMRKMVESAEKERNAVLEQQVSLQRER---QQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQ 156 (178)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHh---ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555544444444333333322222221 11111111 3334556799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 045448 899 TEFLLDELEKLRTGI 913 (1756)
Q Consensus 899 ~~~l~~~~~~lr~gi 913 (1756)
.+-+-++-.-|..|+
T Consensus 157 RKlvQdkAaqLQt~l 171 (178)
T PF14073_consen 157 RKLVQDKAAQLQTGL 171 (178)
T ss_pred HHHHHHHHHHHHhhH
Confidence 999999988888886
No 190
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=86.35 E-value=37 Score=36.74 Aligned_cols=67 Identities=19% Similarity=0.320 Sum_probs=41.0
Q ss_pred HHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 045448 355 ALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLER 421 (1756)
Q Consensus 355 ~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ 421 (1756)
.|...+.++..|.+.+...+..+.+++..++.++..++.....+...+..+...++..++.+..+..
T Consensus 56 ~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~ 122 (151)
T PF11559_consen 56 DLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKN 122 (151)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444445555556667777777777777777777777777777777764444443
No 191
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=86.14 E-value=34 Score=39.44 Aligned_cols=175 Identities=19% Similarity=0.244 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHH
Q 045448 540 NEIFNLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIMGLSRRYQALVEQVLSVGLNPEHLGSAVKELQEENSKLKEVC 619 (1756)
Q Consensus 540 ~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln~~~~~l~E~~~s~~l~~~s~~~~i~~Lq~en~kLkE~~ 619 (1756)
-||+-||..++....||.....+.-.|-..+...+......+.....+.....+-.+..+-....+...+.+..-|++.+
T Consensus 10 GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl 89 (202)
T PF06818_consen 10 GEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKL 89 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhh
Confidence 37888999999999999888888888877777777777766666666666555555555555555555555555566665
Q ss_pred HHhhhhHHHHHHHHHhHhHHHHHHHHHHH----hHh--hhcccccchhhhHHHHHHHhh-----------HHHHHHhhhh
Q 045448 620 KEQGDEKEVLHEKLKNMDNLLKKNAALEG----SLS--EMNIKLEGSGERVNDLQKSCQ-----------FLREEKSSLV 682 (1756)
Q Consensus 620 ~~~~~Ek~~l~ekl~~~e~L~~k~~~le~----sls--~~~~ele~lr~~vk~Lqe~~~-----------~Lke~~s~~~ 682 (1756)
..++.|...|...+...-........+-. -.. .-...+.+++..|--|..+.. .+..+.-+-.
T Consensus 90 ~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~ 169 (202)
T PF06818_consen 90 GQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQ 169 (202)
T ss_pred hhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 55555555554444433100000000000 000 001123334443433333322 5556666678
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhh
Q 045448 683 AEKATLLSQLQIMTENMQKLLEKNVTLEHSLA 714 (1756)
Q Consensus 683 sEK~aL~~qlq~~~~~m~kLlEkns~LE~SLS 714 (1756)
.||+.++-=.-.+-.++=...-+|-.||.-|.
T Consensus 170 eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~l~ 201 (202)
T PF06818_consen 170 EEKEKVIRYQKQLQQNYVQMYQRNQALERELR 201 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88998887555555667777888988887664
No 192
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=85.85 E-value=27 Score=44.10 Aligned_cols=78 Identities=23% Similarity=0.221 Sum_probs=63.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 337 ENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQ 414 (1756)
Q Consensus 337 e~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe 414 (1756)
.++.++++..+.+-.+++.|+++...++..|..+.-.-.|...|+..+.+++....+.-..|......+..+++.+++
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e 424 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEE 424 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 367778888888889999999999999999999888888888899988888888887777777777666666666555
No 193
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=85.68 E-value=14 Score=41.00 Aligned_cols=99 Identities=20% Similarity=0.349 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCCCccchHHHHHHHHHHHH
Q 045448 534 TIQNLQNEIFNLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIMGLSRRYQALVEQVLSVGLNPEHLGSAVKELQEENS 613 (1756)
Q Consensus 534 ~i~~L~~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln~~~~~l~E~~~s~~l~~~s~~~~i~~Lq~en~ 613 (1756)
.+..++.++..+...+..+..++...-+....++..+...++.+..++..|..+..++.-+. ..+++.+....
T Consensus 89 ~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~-------~~~~~~~~~~~ 161 (191)
T PF04156_consen 89 QLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ-------KELQDSREEVQ 161 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 44444555555555555555544444334444444555555555555555555444443331 33344444444
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhHhHH
Q 045448 614 KLKEVCKEQGDEKEVLHEKLKNMDNL 639 (1756)
Q Consensus 614 kLkE~~~~~~~Ek~~l~ekl~~~e~L 639 (1756)
.+...+.........+.+++.+.+.+
T Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~~l 187 (191)
T PF04156_consen 162 ELRSQLERLQENLQQLEEKIQELQEL 187 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555444444444444444444333
No 194
>PF13166 AAA_13: AAA domain
Probab=85.67 E-value=1.4e+02 Score=39.75 Aligned_cols=39 Identities=31% Similarity=0.231 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045448 322 LEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQAL 360 (1756)
Q Consensus 322 lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL 360 (1756)
...+..+...|..+...+...+..+.....+...++..+
T Consensus 362 ~~~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~ 400 (712)
T PF13166_consen 362 NEDIDELNSIIDELNELIEEHNEKIDNLKKEQNELKDKL 400 (712)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666666666666555
No 195
>PRK10869 recombination and repair protein; Provisional
Probab=85.65 E-value=1.3e+02 Score=39.44 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=17.6
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 421 RANHSLQVEAESLVQKIAIKDQELSQKQR 449 (1756)
Q Consensus 421 ~ele~Lq~Ele~l~eKIs~lerEL~eKqe 449 (1756)
..+..|+.++..+..++...-.+|+.++.
T Consensus 341 ~~l~~Le~e~~~l~~~l~~~A~~LS~~R~ 369 (553)
T PRK10869 341 DDLETLALAVEKHHQQALETAQKLHQSRQ 369 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666665554
No 196
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=85.65 E-value=1.2e+02 Score=39.13 Aligned_cols=69 Identities=7% Similarity=0.166 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHhhh
Q 045448 430 AESLVQKIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQTLQKLHSQSQHEQKALTLEL-QNKLQKMK 501 (1756)
Q Consensus 430 le~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~~Le~l~sqsQeE~~~La~El-~~~~~~L~ 501 (1756)
.+.+.+.+..+..++...+.+...+...++.+... ++..+..|++.-.++..+-++||.++ +.+..++.
T Consensus 62 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~---~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~ 131 (475)
T PRK10361 62 CELLNNEVRSLQSINTSLEADLREVTTRMEAAQQH---ADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVD 131 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444455555555554433 36678888888888888888888776 33444443
No 197
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=85.26 E-value=83 Score=41.35 Aligned_cols=89 Identities=19% Similarity=0.265 Sum_probs=61.3
Q ss_pred HHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHH
Q 045448 354 KALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNA----QEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVE 429 (1756)
Q Consensus 354 ~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELsea----eeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~E 429 (1756)
..++..+++|+-+|+++.+||+-..+....--++|... ++.-..|+..-+.+++++-.. ..||++.-+|-.+
T Consensus 107 ~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsr----tsLETqKlDLmae 182 (861)
T KOG1899|consen 107 PEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSR----TSLETQKLDLMAE 182 (861)
T ss_pred hHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhh----hhHHHHHhHHHHH
Confidence 34556677778888888888877766655555555543 344455566666666665554 3588899999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045448 430 AESLVQKIAIKDQELSQ 446 (1756)
Q Consensus 430 le~l~eKIs~lerEL~e 446 (1756)
+-++.-++..++++-.+
T Consensus 183 vSeLKLkltalEkeq~e 199 (861)
T KOG1899|consen 183 VSELKLKLTALEKEQNE 199 (861)
T ss_pred HHHhHHHHHHHHHHhhh
Confidence 99999999888866543
No 198
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=85.06 E-value=72 Score=39.21 Aligned_cols=6 Identities=50% Similarity=0.611 Sum_probs=2.3
Q ss_pred HHHHHH
Q 045448 489 LTLELQ 494 (1756)
Q Consensus 489 La~El~ 494 (1756)
|..++.
T Consensus 246 l~selk 251 (401)
T PF06785_consen 246 LVSELK 251 (401)
T ss_pred HHHHHH
Confidence 333333
No 199
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=84.70 E-value=1.1e+02 Score=37.61 Aligned_cols=10 Identities=20% Similarity=0.361 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 045448 267 ERISTLEKMI 276 (1756)
Q Consensus 267 ErLS~LE~~L 276 (1756)
.++..+...+
T Consensus 88 ~~~~~l~a~~ 97 (423)
T TIGR01843 88 SQVLRLEAEV 97 (423)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 200
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=84.13 E-value=27 Score=45.46 Aligned_cols=29 Identities=28% Similarity=0.260 Sum_probs=14.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhhhHHHH
Q 045448 261 QYNHCLERISTLEKMIIQAQEDSKGLNER 289 (1756)
Q Consensus 261 Qyqq~lErLS~LE~~Ls~AQeelk~L~ER 289 (1756)
.|-...+|+..|+..-..++-.+..|.++
T Consensus 105 ~~~~yQerLaRLe~dkesL~LQvsvLteq 133 (861)
T KOG1899|consen 105 EYPEYQERLARLEMDKESLQLQVSVLTEQ 133 (861)
T ss_pred cchHHHHHHHHHhcchhhheehHHHHHHH
Confidence 44455556666555544444444444444
No 201
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=83.99 E-value=1e+02 Score=39.85 Aligned_cols=45 Identities=18% Similarity=0.269 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcH
Q 045448 186 ETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGL 230 (1756)
Q Consensus 186 deLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL 230 (1756)
+.+-++-.+|++..++++.+.......+..+-.+++..-..+..+
T Consensus 86 qsllk~nk~Lq~~nesLeEqv~~~~d~vvql~hels~k~ellr~y 130 (596)
T KOG4360|consen 86 QSLLKANKALQEDNESLEEQVDAPWDRVVQLGHELSRKDELLRGY 130 (596)
T ss_pred HHHHhhhhhhhhhhhhhHhhhcchHHHHHHhhhhhhhhhhhhhee
Confidence 456777888999999999999999888888888888777666544
No 202
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=83.83 E-value=35 Score=42.44 Aligned_cols=79 Identities=18% Similarity=0.273 Sum_probs=49.1
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------HHHHhhhHHHHHH
Q 045448 364 NEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCV-------------LLERANHSLQVEA 430 (1756)
Q Consensus 364 eeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~-------------~Le~ele~Lq~El 430 (1756)
|..-+.++..|.....+++.+..++..+...+..+..++.....+++.++.++. .....+..|..|+
T Consensus 265 N~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI 344 (359)
T PF10498_consen 265 NNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEI 344 (359)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 334455566677777777777777777777777777777777777777666533 2334555555555
Q ss_pred HHHHHHHHHHHH
Q 045448 431 ESLVQKIAIKDQ 442 (1756)
Q Consensus 431 e~l~eKIs~ler 442 (1756)
.+..-+|+.+++
T Consensus 345 ~qMdvrIGVleh 356 (359)
T PF10498_consen 345 KQMDVRIGVLEH 356 (359)
T ss_pred HHhhhhhheehh
Confidence 555555555443
No 203
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=83.71 E-value=29 Score=37.02 Aligned_cols=94 Identities=26% Similarity=0.225 Sum_probs=53.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhhcHHHHHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 231 DERASKADIEVKVLKEALIRLEAERDAGLLQYNHCLERISTLEKMIIQAQEDSKGLNERASKAEIEAQKLKQELSRLENE 310 (1756)
Q Consensus 231 ~eRA~kAE~EIqsLKetLakLEsekdasllQyqq~lErLS~LE~~Ls~AQeelk~L~ERa~kAE~Ele~LKqeL~~lEaE 310 (1756)
...+...+.|+.+++..++.|+..||. ..++|..+..... .+.....++..|+..+..++..
T Consensus 22 ~s~lr~~E~E~~~l~~el~~l~~~r~~-------l~~Eiv~l~~~~e-----------~~~~~~~~~~~L~~el~~l~~r 83 (120)
T PF12325_consen 22 QSQLRRLEGELASLQEELARLEAERDE-------LREEIVKLMEENE-----------ELRALKKEVEELEQELEELQQR 83 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666777777777666333 3333333333222 1122333455677777777776
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 045448 311 KEAGLLQYKQCLEMIYALESKISLAEENAGML 342 (1756)
Q Consensus 311 kEa~llQykQ~lEkIseLEkKIs~lEe~v~sl 342 (1756)
.++.+.=|-+..|.+.+|...|..+....+.+
T Consensus 84 y~t~LellGEK~E~veEL~~Dv~DlK~myr~Q 115 (120)
T PF12325_consen 84 YQTLLELLGEKSEEVEELRADVQDLKEMYREQ 115 (120)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 66666556677777777777777665554443
No 204
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=83.66 E-value=15 Score=44.72 Aligned_cols=9 Identities=33% Similarity=0.744 Sum_probs=0.0
Q ss_pred hHHHHHHHH
Q 045448 374 YDQCLDKIA 382 (1756)
Q Consensus 374 y~q~lekIs 382 (1756)
|..++.+++
T Consensus 28 Y~~fL~~l~ 36 (314)
T PF04111_consen 28 YQEFLKKLE 36 (314)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 444555544
No 205
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=83.63 E-value=96 Score=36.18 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 045448 286 LNERASKAEIEAQKLKQELSRL 307 (1756)
Q Consensus 286 L~ERa~kAE~Ele~LKqeL~~l 307 (1756)
+...+..|-.++..+...|..+
T Consensus 43 ~~~~i~~aP~~~~~l~~~l~~l 64 (240)
T PF12795_consen 43 YQKQIDQAPKEIRELQKELEAL 64 (240)
T ss_pred HHHHHHHhHHHHHHHHHHHHhh
Confidence 3333344444444444444444
No 206
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=83.45 E-value=96 Score=36.07 Aligned_cols=50 Identities=14% Similarity=0.324 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcH
Q 045448 181 ADSELETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGL 230 (1756)
Q Consensus 181 aEeEIdeLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL 230 (1756)
...-+..++.++...+.+...+...|+.....+..+..-+..+.+.+..+
T Consensus 7 ~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~ 56 (207)
T PF05010_consen 7 LDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQM 56 (207)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34455556666555556666666666666666666665555555544443
No 207
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=83.01 E-value=1.5e+02 Score=37.82 Aligned_cols=131 Identities=17% Similarity=0.079 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 323 EMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEI 402 (1756)
Q Consensus 323 EkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~Ei 402 (1756)
.....|+.++..+++..+.+.-++...-.|-...+.+|.-.-+ +++. +....|--+++.|+.+.......+.+++..+
T Consensus 250 qEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~e-Reas-le~Enlqmr~qqleeentelRs~~arlksl~ 327 (502)
T KOG0982|consen 250 QENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKE-REAS-LEKENLQMRDQQLEEENTELRSLIARLKSLA 327 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777778887777777666666666666432221 2222 2345677788888888888888888888888
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 403 LMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDEQ 462 (1756)
Q Consensus 403 E~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~ 462 (1756)
+++........+ .++.+..++--..+---.+...|.+-+.+...++-.|.+..
T Consensus 328 dklaee~qr~sd-------~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelr 380 (502)
T KOG0982|consen 328 DKLAEEDQRSSD-------LLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELR 380 (502)
T ss_pred HHHhhhhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 877776665555 44444444433333333445555666666666666666643
No 208
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=82.95 E-value=1.5e+02 Score=38.01 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 382 AQMESEIFNAQEHAKQLNSEILMG 405 (1756)
Q Consensus 382 seLE~ELseaeeev~rLn~EiE~l 405 (1756)
-+++.-|++.++++.||......+
T Consensus 449 lEmdk~LskKeeeverLQ~lkgel 472 (527)
T PF15066_consen 449 LEMDKTLSKKEEEVERLQQLKGEL 472 (527)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHH
Confidence 346666666677776666544333
No 209
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=82.77 E-value=13 Score=45.00 Aligned_cols=63 Identities=25% Similarity=0.376 Sum_probs=52.7
Q ss_pred HHHHHHHHhHHHHHHHHHhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHhHHhHhhhhhHHHH
Q 045448 721 EGLRAKSKSLEDFCRMLKNEKSNLLNERSTLVSQLEDVEKRLGNLERRFTKLEEKYADIEREK 783 (1756)
Q Consensus 721 e~lR~K~K~lEEscq~l~~ekS~L~~Ek~~L~SQL~~~t~~l~~Le~k~t~LE~~~s~~~~Ek 783 (1756)
..+|..++.+||.+.-----++-|-|||.+|+.|++.+...|..+++-++.|-..|-+-..|+
T Consensus 80 r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~el 142 (302)
T PF09738_consen 80 RDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIREL 142 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345888888888888788889999999999999999999999999999988888875444433
No 210
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=82.21 E-value=1.3e+02 Score=36.76 Aligned_cols=15 Identities=13% Similarity=0.290 Sum_probs=6.4
Q ss_pred cHHHHHHHHHHHHHH
Q 045448 531 STITIQNLQNEIFNL 545 (1756)
Q Consensus 531 S~~~i~~L~~Ei~~l 545 (1756)
|...+..|+.++..|
T Consensus 274 t~~Ev~~Lk~~~~~L 288 (325)
T PF08317_consen 274 TRSEVKRLKAKVDAL 288 (325)
T ss_pred CHHHHHHHHHHHHHH
Confidence 434444444444433
No 211
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=82.15 E-value=1.7e+02 Score=38.07 Aligned_cols=95 Identities=18% Similarity=0.181 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHH
Q 045448 301 KQELSRLENEKEAGLLQYKQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDK 380 (1756)
Q Consensus 301 KqeL~~lEaEkEa~llQykQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lek 380 (1756)
.+-...+.++.+........|....-.|...|..+..-++.+..++.++..|+...-.-. ||++.....-+....
T Consensus 19 ~~~~~~lqaev~~lr~~~~~~e~~~~~l~~el~qvr~~~~~Q~seL~~l~~ev~~~~~~p-----eke~~~~~~~~~~n~ 93 (531)
T PF15450_consen 19 EQWVAELQAEVACLRGHKERCERATLSLLRELLQVRARVQLQDSELMQLRQEVKQRAQVP-----EKEACEPSSIQNQNQ 93 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc-----cccccCCCCccchhh
Confidence 344445555555555555667777777777887777777777777777777666543333 455554444434445
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045448 381 IAQMESEIFNAQEHAKQLNS 400 (1756)
Q Consensus 381 IseLE~ELseaeeev~rLn~ 400 (1756)
++.|...+.+..+-+-.++.
T Consensus 94 m~~lD~rLvevre~L~~irr 113 (531)
T PF15450_consen 94 MQQLDKRLVEVREALTQIRR 113 (531)
T ss_pred HHhhhHHHHHHHHHHHHHHH
Confidence 56666666555555444433
No 212
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=81.89 E-value=2.4e+02 Score=39.60 Aligned_cols=104 Identities=17% Similarity=0.223 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh--HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH
Q 045448 396 KQLNSEILMGAEKLRTSEQQCV--LLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQ 473 (1756)
Q Consensus 396 ~rLn~EiE~l~~kle~lEe~~~--~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~ 473 (1756)
..+-.+|+++...+.++++.-- .=++.......++.....+|..+..+|..++.++..+... +.
T Consensus 407 Kd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~--------------~~ 472 (1041)
T KOG0243|consen 407 KDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTEL--------------YM 472 (1041)
T ss_pred HHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------Hh
Confidence 3344445555555555444211 0111222233344444444455555555444444444333 24
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHH
Q 045448 474 TLQKLHSQSQHEQKALTLELQNKLQKMKDMEVCNHDLEEG 513 (1756)
Q Consensus 474 ~Le~l~sqsQeE~~~La~El~~~~~~L~~lE~~k~~l~~~ 513 (1756)
.+...+..+.++...+-..|+.....|..++......+..
T Consensus 473 ~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 473 NQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777777777766555555554
No 213
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=81.87 E-value=91 Score=34.70 Aligned_cols=80 Identities=16% Similarity=0.195 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 320 QCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLN 399 (1756)
Q Consensus 320 Q~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn 399 (1756)
.+...|......+..++..+.....+.+++......|+..-..+ ...+++.+|..+.+.+..+...+...+..+..+.
T Consensus 95 ~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~--~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~ 172 (177)
T PF13870_consen 95 RLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLL--GVPALLRDYDKTKEEVEELRKEIKELERKVEILE 172 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555555556666666665554333 4577788999999988888887776666655554
Q ss_pred HH
Q 045448 400 SE 401 (1756)
Q Consensus 400 ~E 401 (1756)
..
T Consensus 173 ~~ 174 (177)
T PF13870_consen 173 MR 174 (177)
T ss_pred Hh
Confidence 33
No 214
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=81.52 E-value=1.8e+02 Score=37.84 Aligned_cols=84 Identities=23% Similarity=0.211 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HhhhhhhHHHH
Q 045448 298 QKLKQELSRLENEKEAG----LLQYKQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQA---LTGLNEEKEAI 370 (1756)
Q Consensus 298 e~LKqeL~~lEaEkEa~----llQykQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqE---L~~LeeEKeal 370 (1756)
.+|++++..++...... .......+.++...+.....+......+..-+. ...+...+... +..+-.--++.
T Consensus 158 ~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~~e~~~~~L~~~~~A~~~~~~-~l~~~~e~~~~l~l~~~~~~~~~~e 236 (511)
T PF09787_consen 158 RSLQEKLSLLDEALKREDGNAITAVVEFLKRTLKKEIERQELEERPKALRHYIE-YLRESGELQEQLELLKAEGESEEAE 236 (511)
T ss_pred hhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 56666666554432221 111333445555555555555544443333222 22233333222 22333456677
Q ss_pred HHhhHHHHHHHH
Q 045448 371 AFRYDQCLDKIA 382 (1756)
Q Consensus 371 ~l~y~q~lekIs 382 (1756)
+.+|+++..+|-
T Consensus 237 l~~Yk~kA~~iL 248 (511)
T PF09787_consen 237 LQQYKQKAQRIL 248 (511)
T ss_pred HHHHHHHHHHHh
Confidence 788886655443
No 215
>PF13166 AAA_13: AAA domain
Probab=80.79 E-value=2.1e+02 Score=38.16 Aligned_cols=22 Identities=5% Similarity=0.006 Sum_probs=15.7
Q ss_pred HHhHhhHHHHHHHHHHHHhhhH
Q 045448 462 QSRFAQVEVTLQTLQKLHSQSQ 483 (1756)
Q Consensus 462 ~~K~~q~E~al~~Le~l~sqsQ 483 (1756)
...+.++|..+.+|=-..+.+.
T Consensus 498 ~~~LSEGEk~~iAf~yFla~l~ 519 (712)
T PF13166_consen 498 AKILSEGEKRAIAFAYFLAELK 519 (712)
T ss_pred cCccCHHHHHHHHHHHHHHHHh
Confidence 3567788888887766666665
No 216
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=80.73 E-value=2e+02 Score=37.80 Aligned_cols=27 Identities=15% Similarity=0.211 Sum_probs=14.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 045448 418 LLERANHSLQVEAESLVQKIAIKDQEL 444 (1756)
Q Consensus 418 ~Le~ele~Lq~Ele~l~eKIs~lerEL 444 (1756)
.|+.++..+..++..+..+|+...++.
T Consensus 350 ~L~~el~~l~~~l~~~a~~Ls~~R~~~ 376 (563)
T TIGR00634 350 ALEEEVDKLEEELDKAAVALSLIRRKA 376 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666554443
No 217
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=80.63 E-value=1.5e+02 Score=36.47 Aligned_cols=88 Identities=20% Similarity=0.222 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 327 ALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGA 406 (1756)
Q Consensus 327 eLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~ 406 (1756)
=+..++..++..+.....++...+.++..+...|..|..+-+....+-.++-..+...+..+..|..=+.-|..+..++.
T Consensus 218 P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~ 297 (344)
T PF12777_consen 218 PKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWS 297 (344)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHH
Confidence 34444555555555555555555555555555554444444444444444444555555555555555555555555555
Q ss_pred HHHHHHHH
Q 045448 407 EKLRTSEQ 414 (1756)
Q Consensus 407 ~kle~lEe 414 (1756)
..+..++.
T Consensus 298 ~~~~~l~~ 305 (344)
T PF12777_consen 298 EQIEELEE 305 (344)
T ss_dssp CHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 218
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=79.95 E-value=19 Score=35.23 Aligned_cols=34 Identities=32% Similarity=0.368 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhh
Q 045448 548 MKEKLEKEIALQEDKSNALQLEVRHLKEEIMGLS 581 (1756)
Q Consensus 548 ~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln 581 (1756)
.+..||.-|..-|+-...||.++..+|+++..|.
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4445555555555555556666666665555554
No 219
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=79.74 E-value=17 Score=36.17 Aligned_cols=36 Identities=39% Similarity=0.463 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhH
Q 045448 547 EMKEKLEKEIALQEDKSNALQLEVRHLKEEIMGLSR 582 (1756)
Q Consensus 547 e~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln~ 582 (1756)
+.+.+||..|..-|+-..-||.||..+|+.+..|+.
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~ 39 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555544
No 220
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=79.63 E-value=37 Score=39.86 Aligned_cols=78 Identities=19% Similarity=0.208 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 325 IYALESKISLAEENAGMLNEQTEKAETE---VKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSE 401 (1756)
Q Consensus 325 IseLEkKIs~lEe~v~slnqrierle~E---i~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~E 401 (1756)
|.+|..++..++.-...+-+.++-++.+ +.++.++...|..||.+.+..-.+-..-|..||..+..+..+-.+....
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~ 82 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEK 82 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444443333333333332222 2334444544444444444444444444444444444444443333333
Q ss_pred H
Q 045448 402 I 402 (1756)
Q Consensus 402 i 402 (1756)
+
T Consensus 83 i 83 (230)
T PF10146_consen 83 I 83 (230)
T ss_pred H
Confidence 3
No 221
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=79.62 E-value=28 Score=34.12 Aligned_cols=67 Identities=22% Similarity=0.179 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 045448 378 LDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQEL 444 (1756)
Q Consensus 378 lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL 444 (1756)
.+-+..||.+|..|-+.+..|+.+++.+..+-..+.+.-..|..++..++.+......+|..+=.++
T Consensus 3 ~E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 3 LELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445677777777777777777777777777666666555555566655555555555555444443
No 222
>PF14992 TMCO5: TMCO5 family
Probab=79.57 E-value=48 Score=39.99 Aligned_cols=56 Identities=29% Similarity=0.395 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 045448 318 YKQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFR 373 (1756)
Q Consensus 318 ykQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~ 373 (1756)
.+++.+....+++++...+.+...-.+.-+....++..++..|.+++++|+.+++.
T Consensus 118 lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE~~lLe 173 (280)
T PF14992_consen 118 LQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEEEKEMLLLE 173 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666677777777766666666666667777888888888888877777654
No 223
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=78.74 E-value=33 Score=41.80 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 045448 342 LNEQTEKAETEVKALKQALTGLN 364 (1756)
Q Consensus 342 lnqrierle~Ei~~LkqEL~~Le 364 (1756)
+..+++.+..|.+....=+..+.
T Consensus 14 l~~~~~~~~~E~~~Y~~fL~~l~ 36 (314)
T PF04111_consen 14 LDKQLEQAEKERDTYQEFLKKLE 36 (314)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333
No 224
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.74 E-value=2e+02 Score=36.83 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhh
Q 045448 330 SKISLAEENAGMLNEQTEKAETEVKALKQALTGLN 364 (1756)
Q Consensus 330 kKIs~lEe~v~slnqrierle~Ei~~LkqEL~~Le 364 (1756)
.+|..++.++.+..+++++-+.....|..++.++-
T Consensus 345 ~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp 379 (521)
T KOG1937|consen 345 RRIQELEQDLEAVDEEIESNEELAEKLRSELEKLP 379 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCC
Confidence 45666777777788888888888888888875554
No 225
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=78.56 E-value=1.5e+02 Score=35.10 Aligned_cols=59 Identities=20% Similarity=0.349 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHhhhc
Q 045448 468 VEVTLQTLQKLHSQSQHEQKALTLELQNKLQKMKDMEVCNHDLEEGIEQVKRENQSLVELNS 529 (1756)
Q Consensus 468 ~E~al~~Le~l~sqsQeE~~~La~El~~~~~~L~~lE~~k~~l~~~~~~~~ee~~~L~eln~ 529 (1756)
|+.-+.-..+.+..-|.+.+.|+-.+.. .|++.....+|+++-+.+.....+.=..+|.
T Consensus 158 A~~LL~~v~~~~~~~~~~~~~l~~~i~~---~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~ 216 (264)
T PF06008_consen 158 AEDLLSRVQKWFQKPQQENESLAEAIRD---DLNDYNAKLQDLRDLLNEAQNKTREAEDLNR 216 (264)
T ss_pred HHHHHHHHHHHHhhHHHhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555556666666654433 3555566666777777766655555444444
No 226
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=78.46 E-value=1.7e+02 Score=39.57 Aligned_cols=87 Identities=14% Similarity=0.207 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhh---hhhHhHH
Q 045448 435 QKIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQTLQKLHSQSQHEQKALTLELQNKLQKMKDME---VCNHDLE 511 (1756)
Q Consensus 435 eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~~Le~l~sqsQeE~~~La~El~~~~~~L~~lE---~~k~~l~ 511 (1756)
-++..+.......+.+++.|+..+.....++..+...+..+...+.....+...+..+|......|.+-. .-+..|+
T Consensus 227 ~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~ 306 (670)
T KOG0239|consen 227 RNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLH 306 (670)
T ss_pred HhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555555555555555555555555555555555555555555555555554444 4455666
Q ss_pred HHHHHHHHHH
Q 045448 512 EGIEQVKREN 521 (1756)
Q Consensus 512 ~~~~~~~ee~ 521 (1756)
|++++++--+
T Consensus 307 N~i~eLkGnI 316 (670)
T KOG0239|consen 307 NEILELKGNI 316 (670)
T ss_pred HHHHHhhcCc
Confidence 6666655444
No 227
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=78.04 E-value=1.3e+02 Score=34.33 Aligned_cols=44 Identities=18% Similarity=0.333 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHHH
Q 045448 191 TLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLDERA 234 (1756)
Q Consensus 191 kI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~eRA 234 (1756)
.|..++..+..++..+-.....-..+++++......+..+..+|
T Consensus 31 ~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A 74 (221)
T PF04012_consen 31 AIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQA 74 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333334444444444444444444333
No 228
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=77.51 E-value=1.5e+02 Score=34.48 Aligned_cols=108 Identities=26% Similarity=0.358 Sum_probs=72.5
Q ss_pred chhhhHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhhhhhHH------HHH-------
Q 045448 659 GSGERVNDLQKSCQFLREEKSSLVAEKATLLSQLQIMTENMQKLLEKNVTLEHSLAGANVELEG------LRA------- 725 (1756)
Q Consensus 659 ~lr~~vk~Lqe~~~~Lke~~s~~~sEK~aL~~qlq~~~~~m~kLlEkns~LE~SLSd~n~ELe~------lR~------- 725 (1756)
.|+......+..-..|+.++-....+..+.+-+++. ..|...+.||..+++.++-.=| +..
T Consensus 75 ~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~------qfl~EK~~LEke~~e~~i~~l~e~a~~el~~k~~ale~ 148 (206)
T PF14988_consen 75 EFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAES------QFLQEKARLEKEASELKILQLGERAHKELKKKAQALEL 148 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhHHHhHHHhhHHHHHHHHHHHH
Confidence 344444445555666777777766666666665544 5799999999998777664311 222
Q ss_pred -HHHhHHHHHHHHHhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHhHH
Q 045448 726 -KSKSLEDFCRMLKNEKSNLLNERSTLVSQLEDVEKRLGNLERRFTKL 772 (1756)
Q Consensus 726 -K~K~lEEscq~l~~ekS~L~~Ek~~L~SQL~~~t~~l~~Le~k~t~L 772 (1756)
-.+.+-++|+++..||.-|..+-.-|+.+...+...=..|++.+..|
T Consensus 149 ~A~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L 196 (206)
T PF14988_consen 149 AAKKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQL 196 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 25668899999999999998887777776666555555555555544
No 229
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=77.36 E-value=1.1e+02 Score=33.09 Aligned_cols=70 Identities=16% Similarity=0.251 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 381 IAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQAS 457 (1756)
Q Consensus 381 IseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~ 457 (1756)
-..+...+.....+..++...++.+..++..++. ++...+.....+..++..+...+..-+.++.+++..
T Consensus 54 ~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~er-------e~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~ 123 (151)
T PF11559_consen 54 REDLSDKLRRLRSDIERLQNDVERLKEQLEELER-------ELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQ 123 (151)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444333333 333333444444444444444444444444444443
No 230
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=77.22 E-value=1.7e+02 Score=35.16 Aligned_cols=104 Identities=21% Similarity=0.236 Sum_probs=58.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 368 EAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQK 447 (1756)
Q Consensus 368 eal~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eK 447 (1756)
..++.+|..+.--++.|+..- ...++.+..++.+.++ ..++.+.. +.+.+..++.+|.-.
T Consensus 41 r~lLqqy~~~~~~i~~le~~~----------~~~l~~ak~eLqe~ee---k~e~~l~~-------Lq~ql~~l~akI~k~ 100 (258)
T PF15397_consen 41 RKLLQQYDIYRTAIDILEYSN----------HKQLQQAKAELQEWEE---KEESKLSK-------LQQQLEQLDAKIQKT 100 (258)
T ss_pred HHHHHHHHHHHHHHHHHHccC----------hHHHHHHHHHHHHHHH---HHHhHHHH-------HHHHHHHHHHHHHHH
Confidence 346777888887777777631 1223333333333333 22233333 444444455555566
Q ss_pred HHHHHHHHHHHHHHH-HhHhhHHHHHHHHHHHHhhhHHHHHHHHH
Q 045448 448 QRELENLQASLQDEQ-SRFAQVEVTLQTLQKLHSQSQHEQKALTL 491 (1756)
Q Consensus 448 qeE~e~Lqs~IqdE~-~K~~q~E~al~~Le~l~sqsQeE~~~La~ 491 (1756)
+.|+.-|.+..+-|- .|.++...-..-++.+--+-|.|++.|-.
T Consensus 101 ~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e 145 (258)
T PF15397_consen 101 QEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNE 145 (258)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677777777664 35556665556666666666666666653
No 231
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=76.32 E-value=2.9e+02 Score=37.40 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045448 320 QCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQAL 360 (1756)
Q Consensus 320 Q~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL 360 (1756)
....+|..++..+..++-.....+...++++.++..-...+
T Consensus 67 d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~l 107 (916)
T KOG0249|consen 67 DMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADL 107 (916)
T ss_pred ccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhh
Confidence 34467777777777777666666666666666666655555
No 232
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.22 E-value=2.6e+02 Score=36.70 Aligned_cols=137 Identities=17% Similarity=0.230 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHhhhHHHHHHHHHHHHHHHHHHHHH
Q 045448 373 RYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLL-------ERANHSLQVEAESLVQKIAIKDQELS 445 (1756)
Q Consensus 373 ~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~L-------e~ele~Lq~Ele~l~eKIs~lerEL~ 445 (1756)
+-...+++|..++.+....-+.|.-++........-+..++++..-| -+++..+..-+++-.+++..++..|.
T Consensus 325 derE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLk 404 (654)
T KOG4809|consen 325 DERERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLK 404 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677777777777777777777777766666677777765543 45666666667777777777777777
Q ss_pred HHHHHHHHHHHHHHHH-HHhHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHH
Q 045448 446 QKQRELENLQASLQDE-QSRFAQVEVTLQTLQKLHSQSQHEQKALTLELQNKLQKMKDMEVCNHDLEEGIEQVK 518 (1756)
Q Consensus 446 eKqeE~e~Lqs~IqdE-~~K~~q~E~al~~Le~l~sqsQeE~~~La~El~~~~~~L~~lE~~k~~l~~~~~~~~ 518 (1756)
.+++-.+- +.+.-| ...+.+.|-+.--.++..+-.|.|+++|. ..|.++++.|.|=-..+.++.
T Consensus 405 kAh~~~dd--ar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlL-------eilkeveneKnDkdkkiaele 469 (654)
T KOG4809|consen 405 KAHNIEDD--ARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLL-------EILKEVENEKNDKDKKIAELE 469 (654)
T ss_pred HHHHhhHh--hhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhccccchhhhcC
Confidence 66654332 222222 23455666666677888888888888775 345556666666555555443
No 233
>PLN02939 transferase, transferring glycosyl groups
Probab=76.13 E-value=3.5e+02 Score=38.12 Aligned_cols=90 Identities=24% Similarity=0.293 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHH--hhhhhhHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHH
Q 045448 323 EMIYALESKISLAEENAGMLNEQ-TEKAETEVKALKQAL--TGLNEEKEAIAFRYDQ-CLDKIAQMESEIFNAQEHAKQL 398 (1756)
Q Consensus 323 EkIseLEkKIs~lEe~v~slnqr-ierle~Ei~~LkqEL--~~LeeEKeal~l~y~q-~lekIseLE~ELseaeeev~rL 398 (1756)
..+-+|+.+++.+++++..+... .+-.=..++.|+.=| +....|+.+++++.+| .-.++..||.-+.++ ++-.+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 348 (977)
T PLN02939 271 ASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEA--NVSKF 348 (977)
T ss_pred HHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHh--hHhhh
Confidence 44555666666666655554332 111122222232222 2234567777766554 445566666654443 33333
Q ss_pred HHH-HHHHHHHHHHHHH
Q 045448 399 NSE-ILMGAEKLRTSEQ 414 (1756)
Q Consensus 399 n~E-iE~l~~kle~lEe 414 (1756)
..+ ++-++++++-+++
T Consensus 349 ~~~~~~~~~~~~~~~~~ 365 (977)
T PLN02939 349 SSYKVELLQQKLKLLEE 365 (977)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 333 2334455555554
No 234
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=75.95 E-value=2.6e+02 Score=37.83 Aligned_cols=103 Identities=15% Similarity=0.176 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 325 IYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILM 404 (1756)
Q Consensus 325 IseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~ 404 (1756)
+..+..++..-..........+..+..+...|...+. .|.....+++.++.......+.+..|..++..
T Consensus 184 ~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~ 252 (670)
T KOG0239|consen 184 LGDLVTELEHVTNSISELESVLKSAQEERRVLADSLG-----------NYADLRRNIKPLEGLESTIKKKIQALQQELEE 252 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-----------hhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444544442 45556666677777666666667777777777
Q ss_pred HHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 045448 405 GAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELS 445 (1756)
Q Consensus 405 l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~ 445 (1756)
+..++..+.. ....+..+++.+...+..+...|.
T Consensus 253 l~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~L~ 286 (670)
T KOG0239|consen 253 LKAELKELND-------QVSLLTREVQEALKESNTLQSDLE 286 (670)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666 444444444444444444433333
No 235
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=75.46 E-value=2e+02 Score=34.92 Aligned_cols=84 Identities=15% Similarity=0.205 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhh--------HH----HHHHhhHHHHHHHHHHHHHHH
Q 045448 322 LEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEE--------KE----AIAFRYDQCLDKIAQMESEIF 389 (1756)
Q Consensus 322 lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeE--------Ke----al~l~y~q~lekIseLE~ELs 389 (1756)
.-++.-|+-++..+...+..+++.+.+++.|.+..+........+ |- ..-.+| ..-.+..+|..++.
T Consensus 94 e~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~-~~~sk~e~L~ekyn 172 (307)
T PF10481_consen 94 ESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQY-YSDSKYEELQEKYN 172 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhh-hhhhhHHHHHHHHH
Confidence 345666666677666666677777777666666655554211100 00 000011 22345677777777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045448 390 NAQEHAKQLNSEILMGA 406 (1756)
Q Consensus 390 eaeeev~rLn~EiE~l~ 406 (1756)
.--++-.+|..++-.+.
T Consensus 173 keveerkrle~e~k~lq 189 (307)
T PF10481_consen 173 KEVEERKRLEAEVKALQ 189 (307)
T ss_pred HHHHHHhhHHHHHHHHh
Confidence 76666666666655554
No 236
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=75.18 E-value=3.8e+02 Score=38.06 Aligned_cols=26 Identities=15% Similarity=0.127 Sum_probs=17.2
Q ss_pred hhhhHHHHHHHHhHHHHHHHHHhhhh
Q 045448 717 NVELEGLRAKSKSLEDFCRMLKNEKS 742 (1756)
Q Consensus 717 n~ELe~lR~K~K~lEEscq~l~~ekS 742 (1756)
..+++.+|..+..+++....+.....
T Consensus 776 ~~~~~~l~~~i~~~~~~~~~~~~~~~ 801 (1047)
T PRK10246 776 EETLTQLEQLKQNLENQRQQAQTLVT 801 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888777666654333
No 237
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=75.08 E-value=1.7e+02 Score=39.76 Aligned_cols=12 Identities=8% Similarity=0.052 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 045448 196 EAEKEAILMQYQ 207 (1756)
Q Consensus 196 QTEKE~LesQyE 207 (1756)
+.....+..+++
T Consensus 564 ~~rv~~Lk~~~e 575 (717)
T PF10168_consen 564 QRRVKLLKQQKE 575 (717)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 238
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=74.68 E-value=23 Score=35.34 Aligned_cols=62 Identities=35% Similarity=0.421 Sum_probs=53.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 045448 530 SSTITIQNLQNEIFNLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIMGLSRRYQALVEQV 591 (1756)
Q Consensus 530 sS~~~i~~L~~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln~~~~~l~E~~ 591 (1756)
++..+|.-|+.||.-||+.+..|..|+..--..+.+|.++.+++|.|-..-+.+.++|.-.+
T Consensus 15 qAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 15 QAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44557888999999999999999998888888899999999999999998888877776544
No 239
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.82 E-value=32 Score=33.59 Aligned_cols=36 Identities=39% Similarity=0.463 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhH
Q 045448 547 EMKEKLEKEIALQEDKSNALQLEVRHLKEEIMGLSR 582 (1756)
Q Consensus 547 e~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln~ 582 (1756)
+.+.+||..|..-|+--.-||-||..+|+.+..|..
T Consensus 4 Ev~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~ 39 (79)
T COG3074 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHH
Confidence 445566666666666666666666666666655543
No 240
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=73.52 E-value=2.6e+02 Score=35.36 Aligned_cols=77 Identities=21% Similarity=0.188 Sum_probs=44.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhc-HHHHHhhHHHHHHHHHHHHHHHHHh
Q 045448 178 EDKADSELETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGG-LDERASKADIEVKVLKEALIRLEAE 254 (1756)
Q Consensus 178 ~~eaEeEIdeLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~E-L~eRA~kAE~EIqsLKetLakLEse 254 (1756)
.+...+++.+++.....|+...+.++.+|..-+.=|.+-=++=.-.+..+.+ |.+...--.+||-.|+..++..+.+
T Consensus 262 l~aileeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasmeer 339 (455)
T KOG3850|consen 262 LDAILEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASMEER 339 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888888888888888877755444333321111111222211 1223333456777777777777655
No 241
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=73.40 E-value=9.6 Score=46.12 Aligned_cols=143 Identities=20% Similarity=0.166 Sum_probs=105.7
Q ss_pred hhhhcchhhhHHHHHHhhhhhhHhHhhhhhhHhHHHHHHHHHhhhchhhhhhhHHhhhchhhhhhhhhHHHHHHHHHHhh
Q 045448 1097 HLHMTNGELQGKVELLGRKLEMKEAEGLHLNETVDKLQKELHEVSDLNDQLNIQIFIGHDSLRQKASDLLEAEQKLKATH 1176 (1756)
Q Consensus 1097 ~l~~~~~~L~~~v~~l~~kl~~~e~e~~~l~~~~~~~~~eL~~~~s~~~~l~~q~~~~~~~l~~k~~~lle~~~~~~~~~ 1176 (1756)
.|-.-++-|--+|..|..+|+.++-....++..+...+.+|...+-.++.|..++...++.|.++|.-|-+-|--+- ..
T Consensus 102 QLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv-~~ 180 (302)
T PF09738_consen 102 QLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEKHGLVLV-PD 180 (302)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeC-CC
Confidence 34445666778899999999999999999999999999999999999999999999999999999977766555332 22
Q ss_pred hhhHHHHHHHH------HHHhhhhHHHHHHHHHhHHHHHHhhhhhhhhHHHHhHHHhhHHHHHHHHHhHHHHHHHHhhhh
Q 045448 1177 NLNVELCITVE------DLKRECDELKLIKENAEKRILEISRDCSKQERELECLQEVNKSLEAEVGILHDEIEEHRIREV 1250 (1756)
Q Consensus 1177 ~~~~el~~~v~------~l~~~~~e~~~~~~~~e~~i~~ls~~~~~q~~ei~~l~e~n~~L~~e~~~l~~e~~~~~~re~ 1250 (1756)
..|.+....+. -..+..+.| +++.-+++.+ -+--+..|-..|+.|..+|++|+..+++.+.+..
T Consensus 181 ~~ngd~~~~~~~~~~~~~~~vs~e~a---------~~L~~aG~g~-LDvRLkKl~~eke~L~~qv~klk~qLee~~~~~~ 250 (302)
T PF09738_consen 181 ATNGDTSDEPNNVGHPKRALVSQEAA---------QLLESAGDGS-LDVRLKKLADEKEELLEQVRKLKLQLEERQSEGR 250 (302)
T ss_pred CCCCccccCccccCCCcccccchhhh---------hhhcccCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 55555544222 122222222 2333332222 2455668889999999999999999999888777
No 242
>PF15294 Leu_zip: Leucine zipper
Probab=72.62 E-value=99 Score=37.44 Aligned_cols=74 Identities=19% Similarity=0.296 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHHH--hhHHHHHHHHHHHHHHHHHh
Q 045448 181 ADSELETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLDERA--SKADIEVKVLKEALIRLEAE 254 (1756)
Q Consensus 181 aEeEIdeLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~eRA--~kAE~EIqsLKetLakLEse 254 (1756)
...+|.+|+.+...+....-.++.++-.....-..++.+|.++|........+. .....++..|..+++.+..+
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e 205 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSE 205 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHH
Confidence 467888888888888888888888888888777888888888877443333221 22334555566666666555
No 243
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=71.55 E-value=3.7e+02 Score=36.41 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 374 YDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQ 414 (1756)
Q Consensus 374 y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe 414 (1756)
|.+.-+++..--.+...+-++.++|-.+.+.....+.++..
T Consensus 197 sdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~ 237 (916)
T KOG0249|consen 197 SDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRH 237 (916)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344666666666667777766666666666555555555
No 244
>PRK10869 recombination and repair protein; Provisional
Probab=71.52 E-value=3.4e+02 Score=35.86 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHh
Q 045448 201 AILMQYQQSLQKFSSLERELNHAQKD 226 (1756)
Q Consensus 201 ~LesQyEe~keKLsElEkEIse~QKe 226 (1756)
.+...|.....+|....+++...+..
T Consensus 154 ~~~~~~~~~y~~~~~~~~~l~~l~~~ 179 (553)
T PRK10869 154 SLLQEMRAAYQLWHQSCRDLAQHQQQ 179 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555444443
No 245
>PRK10698 phage shock protein PspA; Provisional
Probab=71.22 E-value=2.1e+02 Score=33.43 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHHH
Q 045448 186 ETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLDERA 234 (1756)
Q Consensus 186 deLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~eRA 234 (1756)
.-+..-|..+...+..++..+-.....-..+++++..++..+.....+|
T Consensus 27 k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA 75 (222)
T PRK10698 27 KLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKA 75 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444455555555555555555544433
No 246
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=70.79 E-value=78 Score=39.94 Aligned_cols=80 Identities=19% Similarity=0.193 Sum_probs=64.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHHHHHHHh
Q 045448 175 HEAEDKADSELETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLDERASKADIEVKVLKEALIRLEAE 254 (1756)
Q Consensus 175 s~r~~eaEeEIdeLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~eRA~kAE~EIqsLKetLakLEse 254 (1756)
.+|...|+.+++.--++-..+-++...+...|..++.++...|.+|+++|++...+.++.-.++.+.+.+-.....++..
T Consensus 12 dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~ 91 (459)
T KOG0288|consen 12 DQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENL 91 (459)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999998888765544555555554444444444
No 247
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=70.57 E-value=1.7e+02 Score=33.42 Aligned_cols=99 Identities=13% Similarity=0.206 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhhhHH
Q 045448 405 GAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQTLQKLHSQSQH 484 (1756)
Q Consensus 405 l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~~Le~l~sqsQe 484 (1756)
+..++++-...|..|..-|.-|..+++.....-..+..+|.....++..+...+...-..+. .
T Consensus 65 ~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~-----------------~ 127 (182)
T PF15035_consen 65 ALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWR-----------------E 127 (182)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------H
Confidence 33444444445555555666666666655555555555555555555555555444333332 2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHH
Q 045448 485 EQKALTLELQNKLQKMKDMEVCNHDLEEGIEQVKRE 520 (1756)
Q Consensus 485 E~~~La~El~~~~~~L~~lE~~k~~l~~~~~~~~ee 520 (1756)
|-..+..=+...+..|-.||...+.+.-.|.+++..
T Consensus 128 ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr~~ 163 (182)
T PF15035_consen 128 EEENFNQYLSSEHSRLLSLWREVVALRRQFAELRTA 163 (182)
T ss_pred HHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 223344444566677778888888887777766543
No 248
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=70.42 E-value=80 Score=37.21 Aligned_cols=68 Identities=25% Similarity=0.301 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHhhhhcHHHHHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 045448 240 EVKVLKEALIRLEAERDAGLLQYNHCLERISTLEKMIIQAQEDSKGLNERASKAEIEAQKLKQELSRL 307 (1756)
Q Consensus 240 EIqsLKetLakLEsekdasllQyqq~lErLS~LE~~Ls~AQeelk~L~ERa~kAE~Ele~LKqeL~~l 307 (1756)
-+..+...+..|..+|.+-..++++....|..++..+.++..+-....+.+.....++..|++.+..+
T Consensus 33 ~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 33 CLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777777777777788888888888888888777777766666666666666666666554
No 249
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=70.06 E-value=1.7e+02 Score=34.37 Aligned_cols=59 Identities=14% Similarity=0.191 Sum_probs=34.8
Q ss_pred HHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 356 LKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQ 414 (1756)
Q Consensus 356 LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe 414 (1756)
.++.+..+.+++..+...|.+....+..|+....+.+..+..++.++..+...+..++.
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555666666666666666666666666666666555555
No 250
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=69.68 E-value=72 Score=41.96 Aligned_cols=20 Identities=10% Similarity=0.218 Sum_probs=12.4
Q ss_pred HHHHHhHHHHHHHHHHHHHH
Q 045448 259 LLQYNHCLERISTLEKMIIQ 278 (1756)
Q Consensus 259 llQyqq~lErLS~LE~~Ls~ 278 (1756)
+..|+....+|...+..++.
T Consensus 351 ~kAY~~yk~kl~~vEr~~~~ 370 (652)
T COG2433 351 YKAYLAYKPKLEKVERKLPE 370 (652)
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 33466666677777776653
No 251
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=69.43 E-value=2.4e+02 Score=33.30 Aligned_cols=57 Identities=30% Similarity=0.338 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhH
Q 045448 319 KQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYD 375 (1756)
Q Consensus 319 kQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~ 375 (1756)
.+.++++..|++.+...+..+..+...+.+++..+..|+..|..+...|.++...++
T Consensus 88 r~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~ 144 (225)
T COG1842 88 REALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKA 144 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777777777777777777777777777777777777766666666654
No 252
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=69.04 E-value=4.3e+02 Score=36.14 Aligned_cols=14 Identities=21% Similarity=0.394 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHhh
Q 045448 349 AETEVKALKQALTG 362 (1756)
Q Consensus 349 le~Ei~~LkqEL~~ 362 (1756)
+..+++.++.++.+
T Consensus 576 ~kek~ea~~aev~~ 589 (762)
T PLN03229 576 IKEKMEALKAEVAS 589 (762)
T ss_pred HHHHHHHHHHHHHh
Confidence 45555555555533
No 253
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=68.55 E-value=3e+02 Score=34.05 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=28.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045448 178 EDKADSELETLKKTLAEIEAEKEAILMQYQQSLQKFS 214 (1756)
Q Consensus 178 ~~eaEeEIdeLQkkI~aLQTEKE~LesQyEe~keKLs 214 (1756)
+.++..+++.++.++...+.+.+.....-++....+.
T Consensus 10 L~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~ 46 (344)
T PF12777_consen 10 LKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEIE 46 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888888887777766666666554
No 254
>PF13514 AAA_27: AAA domain
Probab=68.50 E-value=5.2e+02 Score=36.87 Aligned_cols=52 Identities=27% Similarity=0.346 Sum_probs=30.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHH
Q 045448 176 EAEDKADSELETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLD 231 (1756)
Q Consensus 176 ~r~~eaEeEIdeLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~ 231 (1756)
..++.+..+++.++.+|...... -..|......+...+.++..++..+..+.
T Consensus 150 ~~in~~l~~l~e~~~~l~~~~~~----~~~y~~l~~~~~~~~~~~~~l~~~~~~l~ 201 (1111)
T PF13514_consen 150 PEINQALKELKELERELREAEVR----AAEYQELQQALEEAEEELEELRAELKELR 201 (1111)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777888887777666543 33444555555555555555555544443
No 255
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=68.49 E-value=2.9e+02 Score=33.99 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=7.9
Q ss_pred HhhhhhhhhhHhHHHHHHH
Q 045448 498 QKMKDMEVCNHDLEEGIEQ 516 (1756)
Q Consensus 498 ~~L~~lE~~k~~l~~~~~~ 516 (1756)
..+++....+..+...+.+
T Consensus 239 ~~I~~~~~~k~e~~~~I~~ 257 (312)
T smart00787 239 SKIEDLTNKKSELNTEIAE 257 (312)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444443
No 256
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=67.95 E-value=71 Score=37.34 Aligned_cols=96 Identities=22% Similarity=0.296 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 321 CLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNS 400 (1756)
Q Consensus 321 ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~ 400 (1756)
|..++-.+..++..++.+ +.+..+...+++.+.. -+.++++.....++...+..
T Consensus 112 vI~R~~~ll~~l~~l~~~--------~~~~~~~~~lk~~~~~------------------~~~~~~~~~~~~~~~~kL~~ 165 (216)
T KOG1962|consen 112 VIRRLHTLLRELATLRAN--------EKAMKENEALKKQLEN------------------SSKLEEENDKLKADLEKLET 165 (216)
T ss_pred HHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHhhhc------------------ccchhhhHHHHHhhHHHHHH
Confidence 445555555555555444 4555556666655521 12255556666666666666
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHH
Q 045448 401 EILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQ 442 (1756)
Q Consensus 401 EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~ler 442 (1756)
+++....+++.++.+...|..+.+.++.||+.+.++-+.+..
T Consensus 166 el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~ 207 (216)
T KOG1962|consen 166 ELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQE 207 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 666666666666665555555666666666665555444433
No 257
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=67.09 E-value=12 Score=46.29 Aligned_cols=107 Identities=19% Similarity=0.298 Sum_probs=32.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhHHhHhhhhhHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHH
Q 045448 749 STLVSQLEDVEKRLGNLERRFTKLEEKYADIEREKESTLSQVEELRYSLTNEQLERANYVQSSESRMVDLESLVHQLQEE 828 (1756)
Q Consensus 749 ~~L~SQL~~~t~~l~~Le~k~t~LE~~~s~~~~Eke~~~~qv~~L~~~L~~e~e~~~~~~~s~e~~l~~le~~i~~Lqee 828 (1756)
.++..++..+.+..++..+.+++|.....+++.|.+.....+.+....+..-.........+...|+.++|..|+.|++.
T Consensus 80 E~~~K~~~~~~e~~ek~~k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~ 159 (370)
T PF02994_consen 80 ENIIKNLEVLKEEKEKSIKELNELKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDR 159 (370)
T ss_dssp --------------------------------------H-------------------------HHHHHHHHHHHHHHHH
T ss_pred HhhhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45666666677778888888888888888888888877755544444433333333333345667888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 829 TTLRKKEFEEELDKAVKAQVEIFILQKFIKDLEE 862 (1756)
Q Consensus 829 ~~~~~~e~e~e~~k~~~aq~ei~ilq~~l~d~ee 862 (1756)
...+....+.... .|-.|..+|.|+++
T Consensus 160 ~~~i~~~~~~~~k-------~i~~l~~kl~DlEn 186 (370)
T PF02994_consen 160 IEEIEQAIKELEK-------RIKKLEDKLDDLEN 186 (370)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHH-------HHHHHHHHHHHHHh
Confidence 7777766544332 25567788999888
No 258
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=66.16 E-value=2e+02 Score=36.01 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 375 DQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQ 414 (1756)
Q Consensus 375 ~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe 414 (1756)
.|+..-.+.++..+..+...+.++..++...-.++...++
T Consensus 223 eqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk 262 (359)
T PF10498_consen 223 EQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREK 262 (359)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444556666666777777777777777777777776
No 259
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=66.04 E-value=4.9e+02 Score=35.69 Aligned_cols=39 Identities=23% Similarity=0.187 Sum_probs=28.4
Q ss_pred HHHHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHhhhc
Q 045448 491 LELQNKLQKMKDMEVCNHDLEEGIEQVKRENQSLVELNS 529 (1756)
Q Consensus 491 ~El~~~~~~L~~lE~~k~~l~~~~~~~~ee~~~L~eln~ 529 (1756)
.+.+....+|..-+..|+.|-..+..--+|+..|++++-
T Consensus 508 ~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR 546 (861)
T PF15254_consen 508 VNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTR 546 (861)
T ss_pred HHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHH
Confidence 344555666777777788888888888888888887764
No 260
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=65.75 E-value=1.8e+02 Score=30.79 Aligned_cols=62 Identities=23% Similarity=0.284 Sum_probs=27.5
Q ss_pred HHHHHhHHhHhhhhhHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHH
Q 045448 765 LERRFTKLEEKYADIEREKESTLSQVEELRYSLTNEQLERANYVQSSESRMVDLESLVHQLQEETT 830 (1756)
Q Consensus 765 Le~k~t~LE~~~s~~~~Eke~~~~qv~~L~~~L~~e~e~~~~~~~s~e~~l~~le~~i~~Lqee~~ 830 (1756)
|+...+.++..+..++.++++...-..+| ..+|..+.+.+++.+++-+.....+..|+-++.
T Consensus 7 l~as~~el~n~La~Le~slE~~K~S~~eL----~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ 68 (107)
T PF09304_consen 7 LEASQNELQNRLASLERSLEDEKTSQGEL----AKQKDQLRNALQSLQAQNASRNQRIAELQAKID 68 (107)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666666655554444 344444444444444444444444444443333
No 261
>PRK10884 SH3 domain-containing protein; Provisional
Probab=65.62 E-value=65 Score=37.30 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q 045448 264 HCLERISTLEKMIIQAQED 282 (1756)
Q Consensus 264 q~lErLS~LE~~Ls~AQee 282 (1756)
....++..++.++..++..
T Consensus 90 ~~~~rlp~le~el~~l~~~ 108 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDK 108 (206)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544433
No 262
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=65.45 E-value=2.8e+02 Score=32.58 Aligned_cols=82 Identities=27% Similarity=0.369 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 381 IAQMESEIFNAQEHAKQLNSEILMGAE-----KLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQ 455 (1756)
Q Consensus 381 IseLE~ELseaeeev~rLn~EiE~l~~-----kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lq 455 (1756)
|..+...+..+......+..+++.... ...... .+..++...+..+..+...+..+..++..+++.+..++
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~----~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~ 97 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQ----QLKREIEELRERLERLRERIERLRKRIEQKRERLEELR 97 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555433 211111 23334445555555555555555555555555555555
Q ss_pred HHHHHHHHhHh
Q 045448 456 ASLQDEQSRFA 466 (1756)
Q Consensus 456 s~IqdE~~K~~ 466 (1756)
..+..-...+.
T Consensus 98 ~~l~~~~~~l~ 108 (302)
T PF10186_consen 98 ESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHH
Confidence 55555444333
No 263
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=64.99 E-value=95 Score=40.92 Aligned_cols=8 Identities=13% Similarity=-0.504 Sum_probs=3.5
Q ss_pred ccccCCcc
Q 045448 167 RIRKGMTV 174 (1756)
Q Consensus 167 ~~~~~ls~ 174 (1756)
.|+..|++
T Consensus 311 f~A~ly~P 318 (652)
T COG2433 311 FNAVLYTP 318 (652)
T ss_pred cCCcccCC
Confidence 34444444
No 264
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=64.64 E-value=2.4e+02 Score=31.51 Aligned_cols=87 Identities=16% Similarity=0.182 Sum_probs=55.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 372 FRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQREL 451 (1756)
Q Consensus 372 l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~ 451 (1756)
.+|.|+--....+..+|.+-..++.+++..+.....-+...++....+..++..+..++......+.....++...+.+.
T Consensus 42 iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r 121 (177)
T PF13870_consen 42 IDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKER 121 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56776666667777777777777777777777777777777775555555666666666666666666655555555555
Q ss_pred HHHHHHH
Q 045448 452 ENLQASL 458 (1756)
Q Consensus 452 e~Lqs~I 458 (1756)
+.+....
T Consensus 122 ~k~~~~~ 128 (177)
T PF13870_consen 122 DKLRKQN 128 (177)
T ss_pred HHHHHHH
Confidence 4444433
No 265
>PRK10884 SH3 domain-containing protein; Provisional
Probab=64.52 E-value=99 Score=35.86 Aligned_cols=40 Identities=20% Similarity=0.211 Sum_probs=17.5
Q ss_pred HHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 409 LRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQ 448 (1756)
Q Consensus 409 le~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKq 448 (1756)
+..+.+....|++++..|..++..+..++..+..++...+
T Consensus 127 ~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 127 VAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333433333444555555554444444444444444333
No 266
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=64.45 E-value=3.7e+02 Score=33.72 Aligned_cols=74 Identities=22% Similarity=0.241 Sum_probs=38.0
Q ss_pred HHhHhHHHHHHHHHHHhHhhhccc-ccchh--hhHHHHHHHhhHHHHHHhhhhHHH-HHHHHHHHHhHHHHHHHHHHHh
Q 045448 633 LKNMDNLLKKNAALEGSLSEMNIK-LEGSG--ERVNDLQKSCQFLREEKSSLVAEK-ATLLSQLQIMTENMQKLLEKNV 707 (1756)
Q Consensus 633 l~~~e~L~~k~~~le~sls~~~~e-le~lr--~~vk~Lqe~~~~Lke~~s~~~sEK-~aL~~qlq~~~~~m~kLlEkns 707 (1756)
+..+-.|-.|.+.||..|.. +.+ +-.|. ..-..|-.....|.-.++.+..-+ +.+-.+++.+...|+.|-++..
T Consensus 208 la~~a~LE~RL~~LE~~lG~-~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~~ 285 (388)
T PF04912_consen 208 LARAADLEKRLARLESALGI-DSDKMSSLDSDTSSSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSELEELAEKRK 285 (388)
T ss_pred HHHHHHHHHHHHHHHHHhCC-CccccccccccCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44555667778888877766 221 11111 013344444555555555554433 4555555555555655554443
No 267
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=64.05 E-value=10 Score=46.20 Aligned_cols=96 Identities=18% Similarity=0.185 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 045448 265 CLERISTLEKMIIQAQEDSKGLNERASKAEIEAQKLKQELSRLENEKEAGLLQYKQCLEMIYALESKISLAEENAGMLNE 344 (1756)
Q Consensus 265 ~lErLS~LE~~Ls~AQeelk~L~ERa~kAE~Ele~LKqeL~~lEaEkEa~llQykQ~lEkIseLEkKIs~lEe~v~slnq 344 (1756)
..+||+.|+.....++..+..+...+......+..+...+.....+.......+..+...|+.|...|..+...+.....
T Consensus 33 I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~s 112 (326)
T PF04582_consen 33 IRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSS 112 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhh
Confidence 34455555555544444444444444444444444444444444443333333344444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHH
Q 045448 345 QTEKAETEVKALKQAL 360 (1756)
Q Consensus 345 rierle~Ei~~LkqEL 360 (1756)
.+..+...+..+...|
T Consensus 113 sIS~Lqs~v~~lsTdv 128 (326)
T PF04582_consen 113 SISDLQSSVSALSTDV 128 (326)
T ss_dssp -----HHHHHHHHHHH
T ss_pred hHHHHHHhhhhhhhhh
Confidence 4444444444444444
No 268
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.06 E-value=53 Score=32.18 Aligned_cols=59 Identities=37% Similarity=0.420 Sum_probs=45.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHH
Q 045448 530 SSTITIQNLQNEIFNLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIMGLSRRYQALV 588 (1756)
Q Consensus 530 sS~~~i~~L~~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln~~~~~l~ 588 (1756)
+.-.+|.-||.||..||+-+-.|-.|+.---..+.+|+++-.++|.+-.+-.++.++|.
T Consensus 15 qAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLL 73 (79)
T COG3074 15 QAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557888999999999988888887776666777888888888877777776666654
No 269
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=62.56 E-value=3.7e+02 Score=33.08 Aligned_cols=130 Identities=10% Similarity=0.117 Sum_probs=85.0
Q ss_pred hhhhhhHHHHHHHHhHHHHHHHHHhhhhhhhhhH--HHHHhhHHHHHHHHHHHHHHHhHHhHhhhhhHHHHhHhHHHHHH
Q 045448 715 GANVELEGLRAKSKSLEDFCRMLKNEKSNLLNER--STLVSQLEDVEKRLGNLERRFTKLEEKYADIEREKESTLSQVEE 792 (1756)
Q Consensus 715 d~n~ELe~lR~K~K~lEEscq~l~~ekS~L~~Ek--~~L~SQL~~~t~~l~~Le~k~t~LE~~~s~~~~Eke~~~~qv~~ 792 (1756)
-+..+++.++.++...|.....+++.+..+.-+. .....++..+...+..++.+.+.+...+.+-.-..-.+..++..
T Consensus 174 fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~ 253 (362)
T TIGR01010 174 FAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKS 253 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHH
Confidence 3344666666666666666666666665554333 35667777777777777777777776666666677777888888
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 793 LRYSLTNEQLERANYVQSSESRMVDLESLVHQLQEETTLRKKEFEEELDKAVKAQ 847 (1756)
Q Consensus 793 L~~~L~~e~e~~~~~~~s~e~~l~~le~~i~~Lqee~~~~~~e~e~e~~k~~~aq 847 (1756)
|+.+|..+........ ...+++..-++..|+-+..--+..|+.-+.+.-.|.
T Consensus 254 l~~~i~~e~~~i~~~~---~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 254 LRKQIDEQRNQLSGGL---GDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred HHHHHHHHHHHhhcCC---CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777665432 234566666666777666666666666666633333
No 270
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=62.31 E-value=4.1e+02 Score=33.43 Aligned_cols=40 Identities=28% Similarity=0.287 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045448 321 CLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQAL 360 (1756)
Q Consensus 321 ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL 360 (1756)
+..++.+++.++..+........-.+..++..+..++..|
T Consensus 259 l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l 298 (444)
T TIGR03017 259 LKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQL 298 (444)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Confidence 3334444444444433333333334444555555554444
No 271
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=61.49 E-value=3.2e+02 Score=32.02 Aligned_cols=7 Identities=43% Similarity=0.449 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 045448 488 ALTLELQ 494 (1756)
Q Consensus 488 ~La~El~ 494 (1756)
.++.++.
T Consensus 148 ~l~~~l~ 154 (302)
T PF10186_consen 148 QLIQELS 154 (302)
T ss_pred HHHHHHH
Confidence 3444443
No 272
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=61.01 E-value=2.8e+02 Score=31.19 Aligned_cols=97 Identities=23% Similarity=0.337 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHHHHHHHhhhhcHHHHHhHHH
Q 045448 188 LKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLDERASKADIEVKVLKEALIRLEAERDAGLLQYNHCLE 267 (1756)
Q Consensus 188 LQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~eRA~kAE~EIqsLKetLakLEsekdasllQyqq~lE 267 (1756)
+++.|.++..=++.+..-++.++..+..+.+++......+..........+.. +..+..
T Consensus 4 i~~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~---------------------er~aR~ 62 (159)
T PF05384_consen 4 IKKTIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKR---------------------ERQARQ 62 (159)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHH
Confidence 46677888888888888888898888888888888888777766655544333 344444
Q ss_pred HHHHHHHHHH-HHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 045448 268 RISTLEKMII-QAQEDSKGLNERASKAEIEAQKLKQELS 305 (1756)
Q Consensus 268 rLS~LE~~Ls-~AQeelk~L~ERa~kAE~Ele~LKqeL~ 305 (1756)
+|...-..+. ....+++...+.|......+..+++.-.
T Consensus 63 rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~ 101 (159)
T PF05384_consen 63 RLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREK 101 (159)
T ss_pred HHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333331 2334455555555555555555544433
No 273
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=60.40 E-value=3.1e+02 Score=31.47 Aligned_cols=56 Identities=20% Similarity=0.249 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 404 MGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQ 459 (1756)
Q Consensus 404 ~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~Iq 459 (1756)
.-..++..++..|..|...-......+..+.+|+...++.=.-.|.-+..|++.++
T Consensus 117 ~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehqRKlvQdkAaqLQt~lE 172 (178)
T PF14073_consen 117 AKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQRKLVQDKAAQLQTGLE 172 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 33445666676777776666666677777777777777666666666666666554
No 274
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=59.98 E-value=5.3e+02 Score=33.96 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 045448 467 QVEVTLQTLQKLHSQSQHEQKALTLELQN 495 (1756)
Q Consensus 467 q~E~al~~Le~l~sqsQeE~~~La~El~~ 495 (1756)
..|+.-.+|+..-.++..|+..+..++..
T Consensus 146 ~~eak~~l~~~~~~~~~~~~~~~~~~~~~ 174 (514)
T TIGR03319 146 QEEAKEILLEEVEEEARHEAAKLIKEIEE 174 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555444433
No 275
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=59.88 E-value=4.5e+02 Score=33.61 Aligned_cols=36 Identities=11% Similarity=0.254 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045448 179 DKADSELETLKKTLAEIEAEKEAILMQYQQSLQKFS 214 (1756)
Q Consensus 179 ~eaEeEIdeLQkkI~aLQTEKE~LesQyEe~keKLs 214 (1756)
......+..+..++..+......+...|+.++..+.
T Consensus 208 ~~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~ 243 (395)
T PF10267_consen 208 SQQNLGLQKILEELREIKESQSRLEESIEKLKEQYQ 243 (395)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777777777766665443
No 276
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=59.77 E-value=4.8e+02 Score=33.42 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=19.1
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 184 ELE-TLKKTLAEIEAEKEAILMQYQQSL 210 (1756)
Q Consensus 184 EId-eLQkkI~aLQTEKE~LesQyEe~k 210 (1756)
-|. .|-++|.++..+++.+-.-|+...
T Consensus 100 fisntLlkkiqal~keketla~~Ye~ee 127 (552)
T KOG2129|consen 100 FISNTLLKKIQALFKEKETLATVYEVEE 127 (552)
T ss_pred HHHHHHHHHHHHhhccccccchhhhhhh
Confidence 344 677788888888887777776544
No 277
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=59.51 E-value=3.1e+02 Score=35.02 Aligned_cols=67 Identities=19% Similarity=0.163 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 342 LNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEK 408 (1756)
Q Consensus 342 lnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~k 408 (1756)
+.+++..++.++....+....+-+++..+..-|.-...++...|.+|..++++...++++.-.....
T Consensus 11 ~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~ 77 (459)
T KOG0288|consen 11 NDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEAT 77 (459)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555556666666666666666889999999998888888877664333
No 278
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=59.46 E-value=2e+02 Score=35.40 Aligned_cols=76 Identities=26% Similarity=0.356 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHH----HHHHHhHhHHHHHHHHHHHhHhhhcccccchhhhHHHHHHHhhHHHHHHhh
Q 045448 605 VKELQEENSKLKEVCKEQGDEKEVL----HEKLKNMDNLLKKNAALEGSLSEMNIKLEGSGERVNDLQKSCQFLREEKSS 680 (1756)
Q Consensus 605 i~~Lq~en~kLkE~~~~~~~Ek~~l----~ekl~~~e~L~~k~~~le~sls~~~~ele~lr~~vk~Lqe~~~~Lke~~s~ 680 (1756)
|.+||+.|..|+..++-...|.-.| .+|+-++++|..-..-|++.+-.-|+- ..-|.+.|.--+.|.+++.+
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaa----aNavrdYqrq~~elneEkrt 77 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAA----ANAVRDYQRQVQELNEEKRT 77 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH----HHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999888888877665 788899999999999999999888864 44556666666667777666
Q ss_pred hhHH
Q 045448 681 LVAE 684 (1756)
Q Consensus 681 ~~sE 684 (1756)
+--|
T Consensus 78 LeRE 81 (351)
T PF07058_consen 78 LERE 81 (351)
T ss_pred HHHH
Confidence 6544
No 279
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=58.63 E-value=6.5e+02 Score=34.60 Aligned_cols=104 Identities=19% Similarity=0.217 Sum_probs=56.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCCCccchHHHHHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHhHhH
Q 045448 561 DKSNALQLEVRHLKEEIMGLSRRYQALVEQVLSVGLNPEHLGSAVKEL--QEENSKLKEVCKEQGDEKEVLHEKLKNMDN 638 (1756)
Q Consensus 561 ~~~~~LQ~Ei~~~KeE~~~Ln~~~~~l~E~~~s~~l~~~s~~~~i~~L--q~en~kLkE~~~~~~~Ek~~l~ekl~~~e~ 638 (1756)
+-...|...|..+|+|+.. -|...+.|+||....+-..-... +.=+..+++-++++..|..-=.+..-+.-.
T Consensus 597 ~~~~~lkeki~~~~~Ei~~------eie~v~~S~gL~~~~~~k~e~a~~~~~p~~~~k~KIe~L~~eIkkkIe~av~ss~ 670 (762)
T PLN03229 597 ELDDDLKEKVEKMKKEIEL------ELAGVLKSMGLEVIGVTKKNKDTAEQTPPPNLQEKIESLNEEINKKIERVIRSSD 670 (762)
T ss_pred CCCHHHHHHHHHHHHHHHH------HHHHHHhccCchhhhhhhhhhcccccCCChhhHHHHHHHHHHHHHHHHHHhcchh
Confidence 4455677777777766542 35667778887655111110000 000122233333333332222222233456
Q ss_pred HHHHHHHHHHhHhhhcccccc-hhhhHHHHHHH
Q 045448 639 LLKKNAALEGSLSEMNIKLEG-SGERVNDLQKS 670 (1756)
Q Consensus 639 L~~k~~~le~sls~~~~ele~-lr~~vk~Lqe~ 670 (1756)
|.+++..|.-.+-.+|--||. ..++|..|+..
T Consensus 671 LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~q 703 (762)
T PLN03229 671 LKSKIELLKLEVAKASKTPDVTEKEKIEALEQQ 703 (762)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH
Confidence 778888888888888888884 36777777644
No 280
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=57.94 E-value=2.5e+02 Score=33.96 Aligned_cols=88 Identities=11% Similarity=0.160 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 318 YKQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQ 397 (1756)
Q Consensus 318 ykQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~r 397 (1756)
.+.....+..+...+..+..+-.+++..+++-..|.+..++.|.+|..=+.|.+..|.++-..++.+=..+-.-=.++.=
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~y 250 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDY 250 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 35566777888888888888888999999999999999999999999999999999999988887776666655555555
Q ss_pred HHHHHHHH
Q 045448 398 LNSEILMG 405 (1756)
Q Consensus 398 Ln~EiE~l 405 (1756)
|..+++..
T Consensus 251 Le~qle~~ 258 (267)
T PF10234_consen 251 LEHQLEEY 258 (267)
T ss_pred HHHHHHHH
Confidence 55555443
No 281
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=57.92 E-value=2e+02 Score=33.97 Aligned_cols=51 Identities=24% Similarity=0.343 Sum_probs=33.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 261 QYNHCLERISTLEKMIIQAQEDSKGLNERASKAEIEAQKLKQELSRLENEK 311 (1756)
Q Consensus 261 Qyqq~lErLS~LE~~Ls~AQeelk~L~ERa~kAE~Ele~LKqeL~~lEaEk 311 (1756)
.|....+....++.++...+++-..|.++....+.+++.+++.|+.++.+.
T Consensus 129 ~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~ 179 (290)
T COG4026 129 EYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVEN 179 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666666666666666777777777766666543
No 282
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=56.22 E-value=6.1e+02 Score=33.56 Aligned_cols=142 Identities=23% Similarity=0.273 Sum_probs=73.2
Q ss_pred hhhhhhhhhHhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 045448 499 KMKDMEVCNHDLEEGIEQVKRENQSLVELNSSSTITIQNLQNEIFNLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIM 578 (1756)
Q Consensus 499 ~L~~lE~~k~~l~~~~~~~~ee~~~L~eln~sS~~~i~~L~~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~ 578 (1756)
.|++++....+.++.-.++.+....|..--..+...+..+...|.. +.+.++. ...=.|=+.+-++.....
T Consensus 383 ~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~e---ikR~mek------~nLPGlPe~~l~l~~~~~ 453 (570)
T COG4477 383 NLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHE---IKRYMEK------SNLPGLPETFLSLFFTAG 453 (570)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH------cCCCCCcHHHHHHHHhhh
Confidence 3444444444444555555555555555555555455555444332 2233332 011123334444443322
Q ss_pred hhhHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-HhHhHHHHHHHHHHHhHhhh
Q 045448 579 GLSRRYQALVEQVLSVGLNPEHLGSAVKELQEENSKLKEVCKEQGDEKEVLHEKL-KNMDNLLKKNAALEGSLSEM 653 (1756)
Q Consensus 579 ~Ln~~~~~l~E~~~s~~l~~~s~~~~i~~Lq~en~kLkE~~~~~~~Ek~~l~ekl-~~~e~L~~k~~~le~sls~~ 653 (1756)
.+-++++.++.-+-+|.......+..-.+-.-.|.......- +.+.|.+++ +==+.-...|+-+.++|+.+
T Consensus 454 ---~~i~~l~~eLse~pinm~~v~~~v~~a~~~m~~l~~~t~e~v-e~a~LaE~lIQY~NRYRs~~~~v~~~l~eA 525 (570)
T COG4477 454 ---HEIQDLMKELSEVPINMEAVSALVDIATEDMNTLEDETEEVV-ENAVLAEQLIQYGNRYRSRNAEVAKSLNEA 525 (570)
T ss_pred ---hHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 234567778888888888888887766666666655544433 333444443 33344455566666666654
No 283
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=55.94 E-value=2.5e+02 Score=28.93 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 045448 319 KQCLEMIYALESKISLAEENAGMLNEQTEKAETEVK 354 (1756)
Q Consensus 319 kQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~ 354 (1756)
.....+|+.++.+|..++..+..+.+-..+++.-+.
T Consensus 62 ~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 62 QPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455678888888888888888888888777776554
No 284
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=55.82 E-value=5.5e+02 Score=32.85 Aligned_cols=7 Identities=43% Similarity=0.932 Sum_probs=3.0
Q ss_pred hhhhchH
Q 045448 26 YYKKRPE 32 (1756)
Q Consensus 26 yy~~Rp~ 32 (1756)
||.+||.
T Consensus 11 ~~~~~~~ 17 (457)
T TIGR01000 11 FYQKRYH 17 (457)
T ss_pred HHHhcCC
Confidence 4444443
No 285
>PRK11519 tyrosine kinase; Provisional
Probab=55.00 E-value=2.8e+02 Score=37.58 Aligned_cols=75 Identities=17% Similarity=0.273 Sum_probs=49.8
Q ss_pred HHHhhHHhhhhhhhhhhHHHHHHHHhHHHHHHHHHhhhhh--hhhhHHHHHhhHHHHHHHHHHHHHHHhHHhHhhhh
Q 045448 704 EKNVTLEHSLAGANVELEGLRAKSKSLEDFCRMLKNEKSN--LLNERSTLVSQLEDVEKRLGNLERRFTKLEEKYAD 778 (1756)
Q Consensus 704 Ekns~LE~SLSd~n~ELe~lR~K~K~lEEscq~l~~ekS~--L~~Ek~~L~SQL~~~t~~l~~Le~k~t~LE~~~s~ 778 (1756)
.|+....+.+.-++..|..+|.++...|...+.++.++.. +..|-..++.++......+..|..+.+.|..+|.+
T Consensus 260 ~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~ 336 (719)
T PRK11519 260 RKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTK 336 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445556667777778888888888888888888777654 45566667777766666666665555555444443
No 286
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=54.97 E-value=5.5e+02 Score=32.61 Aligned_cols=31 Identities=29% Similarity=0.375 Sum_probs=19.9
Q ss_pred HHHHHHHhhh--hhHHHHHHHHHHHHHHhhhhH
Q 045448 552 LEKEIALQED--KSNALQLEVRHLKEEIMGLSR 582 (1756)
Q Consensus 552 LE~Ev~~~v~--~~~~LQ~Ei~~~KeE~~~Ln~ 582 (1756)
-|.||=++|. +.+-|.+||+|+|+|.+..-+
T Consensus 508 yELEVLLRVKEsEiQYLKqEissLkDELQtalr 540 (593)
T KOG4807|consen 508 YELEVLLRVKESEIQYLKQEISSLKDELQTALR 540 (593)
T ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555553 445677788888888776544
No 287
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=54.70 E-value=5.7e+02 Score=32.71 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 045448 341 MLNEQTEKAETEVKALKQALTGLNEEKEAI 370 (1756)
Q Consensus 341 slnqrierle~Ei~~LkqEL~~LeeEKeal 370 (1756)
....+++.++.....++..+.+|..+++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~rL~a~~~~~ 123 (457)
T TIGR01000 94 NEENQKQLLEQQLDNLKDQKKSLDTLKQSI 123 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777778888888888887776653
No 288
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.60 E-value=5.9e+02 Score=32.60 Aligned_cols=79 Identities=27% Similarity=0.207 Sum_probs=45.0
Q ss_pred HhhHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhhhhhHHHHHH-HHhHHHHHHHHHhhhhhhhhhH
Q 045448 670 SCQFLREEKSSLVAEKATLLSQLQIMTENMQKLLEKNVTLEHSLAGANVELEGLRAK-SKSLEDFCRMLKNEKSNLLNER 748 (1756)
Q Consensus 670 ~~~~Lke~~s~~~sEK~aL~~qlq~~~~~m~kLlEkns~LE~SLSd~n~ELe~lR~K-~K~lEEscq~l~~ekS~L~~Ek 748 (1756)
...+|++-+....-=++.|-.+++- =.+.-+.++.|++.+.+|++.+... =.-+=+. .++.-.-.|.+|+
T Consensus 442 ei~~L~eqle~e~~~~~~le~ql~~-------~ve~c~~~~aS~~slk~e~erl~qq~eqi~~~~--~~Katvp~l~~e~ 512 (542)
T KOG0993|consen 442 EIQSLQEQLEKERQSEQELEWQLDD-------DVEQCSNCDASFASLKVEPERLHQQCEQIFCMN--CLKATVPSLPNER 512 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh--HHHhhcccccccc
Confidence 3444444444443334444444433 3677788999999999999988622 0111111 1555556666777
Q ss_pred HHHHhhHHH
Q 045448 749 STLVSQLED 757 (1756)
Q Consensus 749 ~~L~SQL~~ 757 (1756)
.+=|.-|+.
T Consensus 513 ~akv~rlq~ 521 (542)
T KOG0993|consen 513 PAKVCRLQH 521 (542)
T ss_pred hHHHHHHHH
Confidence 666655553
No 289
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=52.79 E-value=3.3e+02 Score=34.97 Aligned_cols=67 Identities=13% Similarity=0.111 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhhhHHHHHH
Q 045448 422 ANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQTLQKLHSQSQHEQKA 488 (1756)
Q Consensus 422 ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~~Le~l~sqsQeE~~~ 488 (1756)
++..+..+-..|...+..++++=.++.++-+.+|+..-.=+...++.+..+.+++....=+|--++.
T Consensus 198 ~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldk 264 (447)
T KOG2751|consen 198 QLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDK 264 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHH
Confidence 3344444455566666666666666666777777777776666677777777776655544433333
No 290
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=51.95 E-value=6.5e+02 Score=32.62 Aligned_cols=39 Identities=13% Similarity=0.080 Sum_probs=16.7
Q ss_pred HHHHHHHhhHHHHHHHHHHhhh----cHHHHHhhHHHHHHHHH
Q 045448 207 QQSLQKFSSLERELNHAQKDAG----GLDERASKADIEVKVLK 245 (1756)
Q Consensus 207 Ee~keKLsElEkEIse~QKel~----EL~eRA~kAE~EIqsLK 245 (1756)
..+..++...+..++..++.+. .+..|+...+.+++.+-
T Consensus 209 ~~lq~~L~la~~~~~~~~e~~i~~~~~f~~r~~~~E~e~rn~~ 251 (554)
T KOG4677|consen 209 RSLQDKLQLAEEAVSMHDENVITAVLIFLKRTLSKEIEFRNEL 251 (554)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3344444444444444443332 23345555555544333
No 291
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=51.41 E-value=1.2e+02 Score=29.65 Aligned_cols=32 Identities=13% Similarity=0.049 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 383 QMESEIFNAQEHAKQLNSEILMGAEKLRTSEQ 414 (1756)
Q Consensus 383 eLE~ELseaeeev~rLn~EiE~l~~kle~lEe 414 (1756)
.+..++...+.....|+.+-+.+...+-.+-.
T Consensus 16 ~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~ 47 (69)
T PF14197_consen 16 SLTRKNSVHEIENKRLRRERDSAERQLGDAYE 47 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444333333333
No 292
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=51.29 E-value=70 Score=30.90 Aligned_cols=51 Identities=16% Similarity=0.245 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHH
Q 045448 377 CLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQ 427 (1756)
Q Consensus 377 ~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq 427 (1756)
+-++|..||.++...+..++.||..+-.-...+..++.++..|...+.++.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346788999999999999999999888888887777776655555555443
No 293
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=51.08 E-value=1.1e+02 Score=35.83 Aligned_cols=26 Identities=12% Similarity=0.060 Sum_probs=10.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 422 ANHSLQVEAESLVQKIAIKDQELSQK 447 (1756)
Q Consensus 422 ele~Lq~Ele~l~eKIs~lerEL~eK 447 (1756)
++..|...+..+..++..+..++++.
T Consensus 178 E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 178 ENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 44444444444444444444444333
No 294
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=50.94 E-value=7.2e+02 Score=32.83 Aligned_cols=95 Identities=13% Similarity=0.158 Sum_probs=70.5
Q ss_pred hhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHhHHhHhhhhhHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhH
Q 045448 739 NEKSNLLNERSTLVSQLEDVEKRLGNLERRFTKLEEKYADIEREKESTLSQVEELRYSLTNEQLERANYVQSSESRMVDL 818 (1756)
Q Consensus 739 ~ekS~L~~Ek~~L~SQL~~~t~~l~~Le~k~t~LE~~~s~~~~Eke~~~~qv~~L~~~L~~e~e~~~~~~~s~e~~l~~l 818 (1756)
..-..|.+.+...-|-.-.....-..|-.+....|.....+..|+..+...+..|++.|..-|-.|+.++..+=..|+.|
T Consensus 420 ~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasm 499 (518)
T PF10212_consen 420 SRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASM 499 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33344444444444444444455666666777777777777778888888888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 045448 819 ESLVHQLQEETTLRK 833 (1756)
Q Consensus 819 e~~i~~Lqee~~~~~ 833 (1756)
..+++.-.+++..++
T Consensus 500 NeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 500 NEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999888887665
No 295
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=49.98 E-value=2.4e+02 Score=28.97 Aligned_cols=80 Identities=20% Similarity=0.199 Sum_probs=63.2
Q ss_pred HHhhHHHHHHHHHHHHHHHhHHhHhhhhhHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHH
Q 045448 751 LVSQLEDVEKRLGNLERRFTKLEEKYADIEREKESTLSQVEELRYSLTNEQLERANYVQSSESRMVDLESLVHQLQEETT 830 (1756)
Q Consensus 751 L~SQL~~~t~~l~~Le~k~t~LE~~~s~~~~Eke~~~~qv~~L~~~L~~e~e~~~~~~~s~e~~l~~le~~i~~Lqee~~ 830 (1756)
+=++|+.+...+.-|++-|..--.+|.++..--.++...+..|.. ...+...+..++.-.+.++..||.-+..|-+=..
T Consensus 12 v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~-k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk 90 (99)
T PF10046_consen 12 VESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQ-KYEELQPYLQQIDQIEEQVTELEQTVYELDEYSK 90 (99)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888999999999999999999998888888888888866 4467777777777778888888888877754433
Q ss_pred H
Q 045448 831 L 831 (1756)
Q Consensus 831 ~ 831 (1756)
.
T Consensus 91 ~ 91 (99)
T PF10046_consen 91 E 91 (99)
T ss_pred H
Confidence 3
No 296
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=49.59 E-value=5.3e+02 Score=30.87 Aligned_cols=52 Identities=15% Similarity=0.231 Sum_probs=30.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHH
Q 045448 177 AEDKADSELETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLD 231 (1756)
Q Consensus 177 r~~eaEeEIdeLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~ 231 (1756)
|+....+.++..-+.|..|..+.+.....|...+.... ..|..+-+.+..-.
T Consensus 8 rVq~eLe~LN~atd~IN~lE~~L~~ar~~fr~~l~e~~---~kL~~~~kkLg~~I 59 (239)
T PF05276_consen 8 RVQEELEKLNQATDEINRLENELDEARATFRRLLSEST---KKLNELAKKLGSCI 59 (239)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 45566666666677777777777777777665554333 33444444444333
No 297
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=49.35 E-value=2.9e+02 Score=31.76 Aligned_cols=80 Identities=25% Similarity=0.347 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 374 YDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELEN 453 (1756)
Q Consensus 374 y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~ 453 (1756)
+.+.++....++.++.+......++...+..++.++.+++. +...+..+......++...+..+..
T Consensus 105 ~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~--------------~~~~~~~~ke~~~~ei~~lks~~~~ 170 (190)
T PF05266_consen 105 QEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQR--------------QAAKLKEKKEAKDKEISRLKSEAEA 170 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666655544444444555444444444444 3334444444444555555555555
Q ss_pred HHHHHHHHHHhHhh
Q 045448 454 LQASLQDEQSRFAQ 467 (1756)
Q Consensus 454 Lqs~IqdE~~K~~q 467 (1756)
++..+.+-..+|..
T Consensus 171 l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 171 LKEEIENAELEFQS 184 (190)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555543
No 298
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.61 E-value=8e+02 Score=32.63 Aligned_cols=266 Identities=17% Similarity=0.203 Sum_probs=137.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhHhhHHHHHHHHHHHHhhhHHHHHHHH
Q 045448 419 LERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQAS--------LQDEQSRFAQVEVTLQTLQKLHSQSQHEQKALT 490 (1756)
Q Consensus 419 Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~--------IqdE~~K~~q~E~al~~Le~l~sqsQeE~~~La 490 (1756)
|..+.-.++-++.++.-.+..+...|++.-+-++..|+. =.+|+.|+........+..--|.-.+-.++.|.
T Consensus 125 lQ~q~k~lqrE~~nlkvelelkeekLsssMnsIKTFwSpELKkeraLRkdEc~ris~~~eQ~~l~segNq~gsm~argl~ 204 (654)
T KOG4809|consen 125 LQRQAKLLQREEHNLKVELELKEEKLSSSMNSIKTFWSPELKKERALRKDECKRISFCSEQNALHSEGNQPGSMNARGLS 204 (654)
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHhcCcccccccccchhhcCcccCchhHHHHHHHHHHHHHhhccCCchhhHHHHHHH
Confidence 344566666667777777777888888888877777764 356888888777776664444444566677777
Q ss_pred HHHHHHHHhhhhhhhhhH--h--------HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Q 045448 491 LELQNKLQKMKDMEVCNH--D--------LEEGIEQVKRENQSLVELNSSSTITIQNLQNEIFNLKEMKEKLEKEIALQ- 559 (1756)
Q Consensus 491 ~El~~~~~~L~~lE~~k~--~--------l~~~~~~~~ee~~~L~eln~sS~~~i~~L~~Ei~~lke~~~~LE~Ev~~~- 559 (1756)
.||-..-..-..|+.+.. . ..-+....+++.-.|.+.--+-...|.+..--|....+-+.+|..++-..
T Consensus 205 ~ELR~qr~rnq~Le~~ssS~~g~~~~~~~~~ae~~~~~~e~~llr~t~~~~e~riEtqkqtl~ardesIkkLlEmLq~kg 284 (654)
T KOG4809|consen 205 AELRNQRARNQPLEINSSSAKGLGYTCLGRLAELLTTKEEQFLLRSTDPSGEQRIETQKQTLDARDESIKKLLEMLQRKG 284 (654)
T ss_pred HHHHHHHhhcchhhhhhhcccCCCchHHHHHHHhhhHHHHHHHHHhcCchHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Confidence 666221111111221111 1 11222222333333333333333344444444444444444444322111
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHhHH
Q 045448 560 EDKSNALQLEVRHLKEEIMGLSRRYQALVEQVLSVGLNPEHLGSAVKELQEENSKLKEVCKEQGDEKEVLHEKLKNMDNL 639 (1756)
Q Consensus 560 v~~~~~LQ~Ei~~~KeE~~~Ln~~~~~l~E~~~s~~l~~~s~~~~i~~Lq~en~kLkE~~~~~~~Ek~~l~ekl~~~e~L 639 (1756)
++.++. -.+.. +-+.+.+.+..+... .+-.|.-|++--...+ .+.+++|+..
T Consensus 285 mg~~~~-----------~~df~-~~~~~a~~~~h~r~~----------~er~IerLkeqr~rde------rE~~EeIe~~ 336 (654)
T KOG4809|consen 285 MGRSNQ-----------PRDFT-KANLSAHEMAHMRMK----------VERIIERLKEQRERDE------RERLEEIESF 336 (654)
T ss_pred cccccc-----------hhhHH-HHHHhHHHHHhhhch----------HHHHHHHhcchhhhhH------HHHHHHHHHH
Confidence 111110 00000 111122222111111 0122223333222222 3567788888
Q ss_pred HHHHHHHHHhHhhhcccccchhhhHHHHHHHhhHHHHHHhhhhHH---HHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhh
Q 045448 640 LKKNAALEGSLSEMNIKLEGSGERVNDLQKSCQFLREEKSSLVAE---KATLLSQLQIMTENMQKLLEKNVTLEHSLAGA 716 (1756)
Q Consensus 640 ~~k~~~le~sls~~~~ele~lr~~vk~Lqe~~~~Lke~~s~~~sE---K~aL~~qlq~~~~~m~kLlEkns~LE~SLSd~ 716 (1756)
.+++.-|.+-|+.+-.++..-.++.++|++.-++|+...-...++ .+.++++- =|+-.-||..|-.+
T Consensus 337 ~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqk----------kEec~kme~qLkkA 406 (654)
T KOG4809|consen 337 RKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQK----------KEECSKMEAQLKKA 406 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 888888888888888888888888999999999998887776655 33333333 33444555555554
Q ss_pred hhhhHH
Q 045448 717 NVELEG 722 (1756)
Q Consensus 717 n~ELe~ 722 (1756)
.--++.
T Consensus 407 h~~~dd 412 (654)
T KOG4809|consen 407 HNIEDD 412 (654)
T ss_pred HHhhHh
Confidence 443333
No 299
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=48.57 E-value=1.4e+02 Score=33.05 Aligned_cols=116 Identities=26% Similarity=0.309 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhhHHh-------------hhhh-hhhhhHHHHHHHHhHHHHHHHHHhhhhhhhhhHHHHHhhH--HHHHH
Q 045448 697 ENMQKLLEKNVTLEH-------------SLAG-ANVELEGLRAKSKSLEDFCRMLKNEKSNLLNERSTLVSQL--EDVEK 760 (1756)
Q Consensus 697 ~~m~kLlEkns~LE~-------------SLSd-~n~ELe~lR~K~K~lEEscq~l~~ekS~L~~Ek~~L~SQL--~~~t~ 760 (1756)
+.|+.|.++.-+.+. .+.. .+.++..+-..+..|.+-+..+..+.+.|.+|..+|.+++ .-+..
T Consensus 37 k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~ 116 (169)
T PF07106_consen 37 KALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELRE 116 (169)
T ss_pred HHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 556666666655443 2221 3556777888888888888888888888888888888887 34456
Q ss_pred HHHHHHHHHhHHhHhhhhhHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 045448 761 RLGNLERRFTKLEEKYADIEREKESTLSQVEELRYSLTNEQLERANYVQSSESRMVDLESLVHQLQEETTLRKKEF 836 (1756)
Q Consensus 761 ~l~~Le~k~t~LE~~~s~~~~Eke~~~~qv~~L~~~L~~e~e~~~~~~~s~e~~l~~le~~i~~Lqee~~~~~~e~ 836 (1756)
.+..|..+...|+.++..+..... .-+......+++.+.......+.|++.+
T Consensus 117 ~i~~l~~e~~~l~~kL~~l~~~~~------------------------~vs~ee~~~~~~~~~~~~k~w~kRKri~ 168 (169)
T PF07106_consen 117 EIEELEEEIEELEEKLEKLRSGSK------------------------PVSPEEKEKLEKEYKKWRKEWKKRKRIC 168 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666666666655543111 1334555666667777777776666543
No 300
>PF14992 TMCO5: TMCO5 family
Probab=47.86 E-value=1.9e+02 Score=35.17 Aligned_cols=118 Identities=24% Similarity=0.311 Sum_probs=62.7
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHH
Q 045448 505 VCNHDLEEGIEQVKRENQSLVELNSSSTITIQNLQNEIFNLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIMGLSRRY 584 (1756)
Q Consensus 505 ~~k~~l~~~~~~~~ee~~~L~eln~sS~~~i~~L~~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln~~~ 584 (1756)
.-+.++....+++-++|+.|-..-.-....|++|..||...-.....-+.+=.. + ..-|..++.+..+..-|....
T Consensus 4 sLn~dle~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~-~---~~~e~~l~~le~e~~~LE~~n 79 (280)
T PF14992_consen 4 SLNMDLEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDII-S---EERETDLQELELETAKLEKEN 79 (280)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhh-h---hchHHHHHHHHhhhHHHhhhh
Confidence 456788888888888888855555566778888888887666544444332111 1 112333333334444444433
Q ss_pred HHH----HH-------HHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhhhhH
Q 045448 585 QAL----VE-------QVLSVGLNPEHLGSAVKELQEENSKLKEVCKEQGDEK 626 (1756)
Q Consensus 585 ~~l----~E-------~~~s~~l~~~s~~~~i~~Lq~en~kLkE~~~~~~~Ek 626 (1756)
..+ .+ +-..++........++...+.....+.+.|..++.+.
T Consensus 80 e~l~~~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei 132 (280)
T PF14992_consen 80 EHLSKSVQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEI 132 (280)
T ss_pred HhhhhhhhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHH
Confidence 333 11 1112333333334444555566666666666555543
No 301
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=47.77 E-value=2.8e+02 Score=31.87 Aligned_cols=57 Identities=16% Similarity=0.225 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHH
Q 045448 376 QCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAES 432 (1756)
Q Consensus 376 q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~ 432 (1756)
..-..|.+|+.++.+.+.....+....+....++..++..+..++.++.+...+.++
T Consensus 128 ~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 128 ELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777777777777777777776666666666555555555555554443
No 302
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=47.28 E-value=99 Score=30.19 Aligned_cols=59 Identities=24% Similarity=0.258 Sum_probs=48.8
Q ss_pred hhhhHHHHHHHHhHHHHHHHHHhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHhHHhHh
Q 045448 717 NVELEGLRAKSKSLEDFCRMLKNEKSNLLNERSTLVSQLEDVEKRLGNLERRFTKLEEK 775 (1756)
Q Consensus 717 n~ELe~lR~K~K~lEEscq~l~~ekS~L~~Ek~~L~SQL~~~t~~l~~Le~k~t~LE~~ 775 (1756)
-++...||..+..+..-......++..|..||+..+++|........+|-.++..|.+.
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888888889999999999999999999988888888777776654
No 303
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=46.50 E-value=4.9e+02 Score=30.71 Aligned_cols=85 Identities=19% Similarity=0.234 Sum_probs=74.2
Q ss_pred hcccccchhhhHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhhhhhHHHHHHHHhHHH
Q 045448 653 MNIKLEGSGERVNDLQKSCQFLREEKSSLVAEKATLLSQLQIMTENMQKLLEKNVTLEHSLAGANVELEGLRAKSKSLED 732 (1756)
Q Consensus 653 ~~~ele~lr~~vk~Lqe~~~~Lke~~s~~~sEK~aL~~qlq~~~~~m~kLlEkns~LE~SLSd~n~ELe~lR~K~K~lEE 732 (1756)
....++.+...++.....-......+.....|+..|..++..+...++.|--.|.-|+..+.+.+.+++.+......++.
T Consensus 19 ~a~~~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 19 AAATLDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35668888888888888888999999999999999999999999999999999999999999999999999888888886
Q ss_pred HHHHH
Q 045448 733 FCRML 737 (1756)
Q Consensus 733 scq~l 737 (1756)
.-+-+
T Consensus 99 ~~~~l 103 (251)
T PF11932_consen 99 TRQEL 103 (251)
T ss_pred HHHHH
Confidence 64444
No 304
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=46.36 E-value=5.5e+02 Score=30.09 Aligned_cols=39 Identities=26% Similarity=0.271 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHhhhhcHHHHHhHHHHHHHHHHHHHHHHhhhhhH
Q 045448 240 EVKVLKEALIRLEAERDAGLLQYNHCLERISTLEKMIIQAQEDSKGL 286 (1756)
Q Consensus 240 EIqsLKetLakLEsekdasllQyqq~lErLS~LE~~Ls~AQeelk~L 286 (1756)
-+..+..++..|..- .....+...+...+..+-..+..+
T Consensus 19 ~i~~l~~al~~L~~~--------~~~~~~~~~~~~~i~~aP~~~~~l 57 (240)
T PF12795_consen 19 LIQDLQQALSFLDEI--------KKQKKRAAEYQKQIDQAPKEIREL 57 (240)
T ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 456667777666533 334444445555555444444444
No 305
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=46.11 E-value=5.7e+02 Score=30.26 Aligned_cols=52 Identities=17% Similarity=0.253 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Q 045448 340 GMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNA 391 (1756)
Q Consensus 340 ~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELsea 391 (1756)
..+.+.+..++.+....++.++.+-..+..+--+|.++......++..-..|
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~A 78 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELA 78 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777777777777777777777777777777777765544
No 306
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=45.39 E-value=4.5e+02 Score=35.74 Aligned_cols=76 Identities=16% Similarity=0.263 Sum_probs=50.5
Q ss_pred HHHHHHhhHHhhhhhhhhhhHHHHHHHHhHHHHHHHHHhhhhhh--hhhHHHHHhhHHHHHHHHHHHHHHHhHHhHhh
Q 045448 701 KLLEKNVTLEHSLAGANVELEGLRAKSKSLEDFCRMLKNEKSNL--LNERSTLVSQLEDVEKRLGNLERRFTKLEEKY 776 (1756)
Q Consensus 701 kLlEkns~LE~SLSd~n~ELe~lR~K~K~lEEscq~l~~ekS~L--~~Ek~~L~SQL~~~t~~l~~Le~k~t~LE~~~ 776 (1756)
.+-.|+..-.+.+.-++.+|..++.++...|...+.++.++..+ ..+-..+++++......+..|..+.+.|...|
T Consensus 257 ~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~ 334 (726)
T PRK09841 257 NIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLY 334 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777777778888888899999999998888888876433 33455666666555555555554444444433
No 307
>PRK12704 phosphodiesterase; Provisional
Probab=45.24 E-value=8.7e+02 Score=32.10 Aligned_cols=64 Identities=27% Similarity=0.374 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 045448 435 QKIAIKDQELSQKQRELENLQASLQD---EQSRFAQVEVTLQTLQKLHSQSQHEQKALTLELQNKLQ 498 (1756)
Q Consensus 435 eKIs~lerEL~eKqeE~e~Lqs~Iqd---E~~K~~q~E~al~~Le~l~sqsQeE~~~La~El~~~~~ 498 (1756)
..+..+..+|..++.+++.+...... ..+-+...|+.-..|+..-.++..|+..+..++....+
T Consensus 117 ~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 183 (520)
T PRK12704 117 KELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAK 183 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433333222 23334445555566666666666666666655544433
No 308
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=44.83 E-value=9.7e+02 Score=32.54 Aligned_cols=94 Identities=18% Similarity=0.162 Sum_probs=76.3
Q ss_pred hhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCccchhhhHhhHHHhhhhhhch
Q 045448 877 ASKLSDKLIAELESENLEQQVETEFLLDELEKLRTGIYQVFRVLQFDPANWHEGKIEQGHIPIPQIVEDIEDLKSSVLRN 956 (1756)
Q Consensus 877 ~~k~se~~iseLE~e~~~~q~e~~~l~~~~~~lr~gi~qv~~~l~~~~~~~~~d~~~~~~~~~~~i~~~~~~~~~~~~~~ 956 (1756)
++..++.-+..+|-++.+....++.|.+.++-|.....+-=.++. .+..=-.+|.+....++..
T Consensus 345 ~~~~s~~~al~~ele~~~l~A~l~~L~se~q~L~~~~~~r~e~~~----------------~Lq~K~q~I~~frqlv~e~ 408 (632)
T PF14817_consen 345 LSGSSEREALALELEVAGLKASLNALRSECQRLKEAAAERQEALR----------------SLQAKWQRILDFRQLVSEK 408 (632)
T ss_pred ccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHH
Confidence 344456666688889999999999999999999888776433331 3444456788899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhchhhhh
Q 045448 957 EDEKQQLVIENTVLLTLIGQLRLDGAEQES 986 (1756)
Q Consensus 957 ~~~~q~~~~E~svl~t~L~q~~~e~~~l~~ 986 (1756)
|+--+-++..||..-|.|.|...++..+..
T Consensus 409 QeqIr~LiK~Nsaakt~L~q~~~E~~~~~~ 438 (632)
T PF14817_consen 409 QEQIRALIKGNSAAKTQLEQSPAEAQEFVQ 438 (632)
T ss_pred HHHHHHHHHhhHHHHHHHHhChHHHHHHHh
Confidence 999999999999999999999999988876
No 309
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=44.64 E-value=2.2e+02 Score=28.61 Aligned_cols=60 Identities=20% Similarity=0.304 Sum_probs=45.4
Q ss_pred hHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 779 IEREKESTLSQVEELRYSLTNEQLERANYVQSSESRMVDLESLVHQLQEETTLRKKEFEEELDK 842 (1756)
Q Consensus 779 ~~~Eke~~~~qv~~L~~~L~~e~e~~~~~~~s~e~~l~~le~~i~~Lqee~~~~~~e~e~e~~k 842 (1756)
+..|.+.+....-. ....+..+...+.+--+.+..+...|..|+.....++..||+|..+
T Consensus 9 ir~Ef~~~~~e~~~----~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~r 68 (79)
T PF08581_consen 9 IRQEFENLSQEANS----YKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIAR 68 (79)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443332 3336777777788888888899999999999999999999999988
No 310
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=44.50 E-value=6.3e+02 Score=34.41 Aligned_cols=25 Identities=12% Similarity=0.007 Sum_probs=15.0
Q ss_pred HhHHHHhhhHHHHHHHHHHHHHHHH
Q 045448 416 CVLLERANHSLQVEAESLVQKIAIK 440 (1756)
Q Consensus 416 ~~~Le~ele~Lq~Ele~l~eKIs~l 440 (1756)
...|+++.+..+.-|..+.++.+..
T Consensus 372 ~~~L~R~~~~~~~lY~~lL~r~~e~ 396 (726)
T PRK09841 372 VLRLSRDVEAGRAVYLQLLNRQQEL 396 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666666666666666665543
No 311
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=43.32 E-value=1.6e+02 Score=36.32 Aligned_cols=70 Identities=20% Similarity=0.291 Sum_probs=51.3
Q ss_pred hhhhhhHHHHH-HHHhHHHHHHHHHhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHhHHhHhhhhhHHHHh
Q 045448 715 GANVELEGLRA-KSKSLEDFCRMLKNEKSNLLNERSTLVSQLEDVEKRLGNLERRFTKLEEKYADIEREKE 784 (1756)
Q Consensus 715 d~n~ELe~lR~-K~K~lEEscq~l~~ekS~L~~Ek~~L~SQL~~~t~~l~~Le~k~t~LE~~~s~~~~Eke 784 (1756)
|.-+=+-.+|. ||-.+||-.+----=++-|-+||++|+.|++....-|.-+++..++=-.-|-+.+.|.+
T Consensus 108 D~EAs~~e~~Dskv~EveekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~e 178 (405)
T KOG2010|consen 108 DPEASLSELRDSKVSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELE 178 (405)
T ss_pred ChHHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666677 77888888877777789999999999999999888777776666655444444444443
No 312
>PRK12704 phosphodiesterase; Provisional
Probab=43.02 E-value=9.3e+02 Score=31.82 Aligned_cols=56 Identities=30% Similarity=0.435 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhhhHHHHHHHH
Q 045448 429 EAESLVQKIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQTLQKLHSQSQHEQKALT 490 (1756)
Q Consensus 429 Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~~Le~l~sqsQeE~~~La 490 (1756)
.++.-...|......|..+..+++.+...++.= .+.....|++.-.-+++|++...
T Consensus 104 ~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~------~~~~~~~l~~~a~lt~~ea~~~l 159 (520)
T PRK12704 104 LLEKREEELEKKEKELEQKQQELEKKEEELEEL------IEEQLQELERISGLTAEEAKEIL 159 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhCCCHHHHHHHH
Confidence 333444444444555555555555444433321 12334456666666666666554
No 313
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=42.40 E-value=6.1e+02 Score=29.48 Aligned_cols=48 Identities=15% Similarity=0.271 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHHHh
Q 045448 188 LKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLDERAS 235 (1756)
Q Consensus 188 LQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~eRA~ 235 (1756)
+..-|..+...+..++..+-.....-..+++++..++..+.....+|.
T Consensus 29 l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~ 76 (219)
T TIGR02977 29 IRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAE 76 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444455555555555544444433
No 314
>PRK10698 phage shock protein PspA; Provisional
Probab=42.34 E-value=6.3e+02 Score=29.66 Aligned_cols=47 Identities=21% Similarity=0.106 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 045448 303 ELSRLENEKEAGLLQYKQCLEMIYALESKISLAEENAGMLNEQTEKA 349 (1756)
Q Consensus 303 eL~~lEaEkEa~llQykQ~lEkIseLEkKIs~lEe~v~slnqrierl 349 (1756)
.+..++.+.+....+..++...+..|+.+|..+......+..|...+
T Consensus 100 ~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A 146 (222)
T PRK10698 100 LIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAA 146 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444333344444455555555555555555544444433
No 315
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=41.93 E-value=3e+02 Score=29.12 Aligned_cols=65 Identities=17% Similarity=0.277 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHH
Q 045448 325 IYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIF 389 (1756)
Q Consensus 325 IseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELs 389 (1756)
++.|..+...+...+-.-.+....+..++....+.|.+++.|.|++...-+|+..|+..|-.++.
T Consensus 7 YsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 7 YSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444555666677777778888888888888888888888877777665
No 316
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=41.74 E-value=1.1e+02 Score=29.66 Aligned_cols=40 Identities=25% Similarity=0.366 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045448 321 CLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQAL 360 (1756)
Q Consensus 321 ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL 360 (1756)
+.++|.+|+.+++..+..+..+|.-+-+-..+++.|+..+
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l 41 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQL 41 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888888888888888888888887777
No 317
>PRK00846 hypothetical protein; Provisional
Probab=41.21 E-value=1.6e+02 Score=29.61 Aligned_cols=52 Identities=8% Similarity=0.084 Sum_probs=37.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 045448 370 IAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLER 421 (1756)
Q Consensus 370 l~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ 421 (1756)
+.+.-+.+..||..||..+...+..++.||..+-.....+..++.++..|-.
T Consensus 4 ~~~~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~ 55 (77)
T PRK00846 4 LSLRDQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 55 (77)
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556778889999999999999888888887776666666654443333
No 318
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=40.89 E-value=26 Score=32.89 Aligned_cols=39 Identities=33% Similarity=0.410 Sum_probs=31.9
Q ss_pred hhhhHHHHHHHhhhhhhhhhhhhhhcccchhHHHhhhhh
Q 045448 1308 KSLESKQMKERIGSLESEIGRLKSRLSSYDPVIASLKDN 1346 (1756)
Q Consensus 1308 k~~~i~~lkerv~~lE~En~~Lk~~Lsay~p~i~sL~~~ 1346 (1756)
|..++++|..+|..|+.+|..|+..+..+-.-+.+|...
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 24 KKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456999999999999999999998877776666666544
No 319
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=40.80 E-value=4.2e+02 Score=27.19 Aligned_cols=63 Identities=27% Similarity=0.239 Sum_probs=31.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 045448 282 DSKGLNERASKAEIEAQKLKQELSRLENEKEAGLLQYKQCLEMIYALESKISLAEENAGMLNE 344 (1756)
Q Consensus 282 elk~L~ERa~kAE~Ele~LKqeL~~lEaEkEa~llQykQ~lEkIseLEkKIs~lEe~v~slnq 344 (1756)
..+.+...+...-.++..+.+.+..+..++..+--.|+......+.+...+..+.......+.
T Consensus 11 a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~ 73 (96)
T PF08647_consen 11 AFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSE 73 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHH
Confidence 333444444444555555666666666655555544555544444444444444444443333
No 320
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=40.22 E-value=8.5e+02 Score=30.60 Aligned_cols=29 Identities=28% Similarity=0.402 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHhHhhHHH
Q 045448 442 QELSQKQRELENLQASLQD---EQSRFAQVEV 470 (1756)
Q Consensus 442 rEL~eKqeE~e~Lqs~Iqd---E~~K~~q~E~ 470 (1756)
.=|+-+|.-+..|.+.++| |...+.|-|.
T Consensus 194 ~ml~kRQ~yI~~LEsKVqDLm~EirnLLQle~ 225 (401)
T PF06785_consen 194 SMLDKRQAYIGKLESKVQDLMYEIRNLLQLES 225 (401)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3355666666666776666 4444444443
No 321
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=40.05 E-value=34 Score=45.15 Aligned_cols=74 Identities=24% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHH-HhhhcccHHHHHHHHHHHHHHHH
Q 045448 469 EVTLQTLQKLHSQSQHEQKALTLELQNKLQKMKDMEVCNHDLEEGIEQVKRENQSL-VELNSSSTITIQNLQNEIFNLKE 547 (1756)
Q Consensus 469 E~al~~Le~l~sqsQeE~~~La~El~~~~~~L~~lE~~k~~l~~~~~~~~ee~~~L-~eln~sS~~~i~~L~~Ei~~lke 547 (1756)
...+..|...+.+++.+.......+.....++..||+....- .++...+ ..-+.-|...|..++.|+.-|.+
T Consensus 206 ~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~LW~~L~~~-------~ee~~~F~~~~~~ls~~~i~~l~~El~RL~~ 278 (619)
T PF03999_consen 206 DENLEKLQELLQELEEEKEEREEKLQELREKIEELWNRLDVP-------EEEREAFLEENSGLSLDTIEALEEELERLEE 278 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------HHHHHHHhhccCcchHHHHHHHHHHHHHHHH
Confidence 344455666666666666655556666666666666555432 2333322 22223345678888888887776
Q ss_pred HH
Q 045448 548 MK 549 (1756)
Q Consensus 548 ~~ 549 (1756)
+.
T Consensus 279 lK 280 (619)
T PF03999_consen 279 LK 280 (619)
T ss_dssp --
T ss_pred HH
Confidence 43
No 322
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=39.62 E-value=45 Score=40.96 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045448 323 EMIYALESKISLAEENAGMLNEQTEKAETEVKALKQAL 360 (1756)
Q Consensus 323 EkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL 360 (1756)
.+|++|...+..+...+...+..++.+...+..++..|
T Consensus 56 s~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl 93 (326)
T PF04582_consen 56 STISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSL 93 (326)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444
No 323
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.57 E-value=2.1e+02 Score=37.73 Aligned_cols=56 Identities=30% Similarity=0.369 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHhhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 045448 844 VKAQVEIFILQKFIKDLEEKNLSLLIECQKHVEASKLSDKLIAELESENLEQQVETEFLLDELEKLRT 911 (1756)
Q Consensus 844 ~~aq~ei~ilq~~l~d~eekn~sLl~ecqk~~e~~k~se~~iseLE~e~~~~q~e~~~l~~~~~~lr~ 911 (1756)
-.+++|+|+...+-.|+.+-|+ ..-+++-+.+||.|....+.+++.|++++.++-.
T Consensus 425 sk~~le~~~v~~~~~~VQe~~~------------Y~g~ekk~n~LE~e~kn~~~ev~kls~ei~~ie~ 480 (758)
T COG4694 425 SKEQLEKFLVNEFKSDVQEYNK------------YCGLEKKINNLEKEIKNNQEEVKKLSNEIKEIEK 480 (758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3489999999999999887663 2356788999999999999999999998876654
No 324
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=38.85 E-value=1.3e+02 Score=39.84 Aligned_cols=249 Identities=22% Similarity=0.216 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHhhhhcHHHHHhHHHHHHHHHHHHHHHHh--hhh-hHHH------HHHHHHHHHHHHHHHHHHHHH
Q 045448 239 IEVKVLKEALIRLEAERDAGLLQYNHCLERISTLEKMIIQAQE--DSK-GLNE------RASKAEIEAQKLKQELSRLEN 309 (1756)
Q Consensus 239 ~EIqsLKetLakLEsekdasllQyqq~lErLS~LE~~Ls~AQe--elk-~L~E------Ra~kAE~Ele~LKqeL~~lEa 309 (1756)
..+..++..+..|+.+++.-+.+.......|-.+-..+..... ... .+.. ...=-..-+..|...+..++.
T Consensus 142 ~~l~~l~~~l~~L~~e~~~R~~~v~~l~~~I~~l~~~L~~~~~~~~~e~~l~~~~~~~~~~~Ls~~~l~~L~~~~~~L~~ 221 (619)
T PF03999_consen 142 EELEELRQHLQRLQEEKERRLEEVRELREEIISLMEELGIDPERTSFEKDLLSYSEDEESFCLSDENLEKLQELLQELEE 221 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccchhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 4566777777777777444444444444444433333221110 000 0000 000001122233333334444
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHhhhhhhHHHHHHhh-HHHHHHHHHHHHH
Q 045448 310 EKEAGLLQYKQCLEMIYALESKISLAEENAGMLNEQTE-KAETEVKALKQALTGLNEEKEAIAFRY-DQCLDKIAQMESE 387 (1756)
Q Consensus 310 EkEa~llQykQ~lEkIseLEkKIs~lEe~v~slnqrie-rle~Ei~~LkqEL~~LeeEKeal~l~y-~q~lekIseLE~E 387 (1756)
++..-..++..+..+|..|=+++..-+......-.... -...-++.++.+|.+|++-|...+-.+ ..+...|.++=..
T Consensus 222 ~k~~r~~~~~~l~~~i~~LW~~L~~~~ee~~~F~~~~~~ls~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~ 301 (619)
T PF03999_consen 222 EKEEREEKLQELREKIEELWNRLDVPEEEREAFLEENSGLSLDTIEALEEELERLEELKKQNLKEFIEKKRQEIEELWDK 301 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44333333444444555555444444433332211101 112334556666666665555444433 3334444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 045448 388 IFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDEQSRFAQ 467 (1756)
Q Consensus 388 Lseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q 467 (1756)
....++....+..-...... +.-+..+|.++..|+..|+....-+...++-.. ...+..-|...-.| -.+|..
T Consensus 302 ~~~s~eer~~F~~~~~d~~~-----E~lL~~hE~Ei~~Lk~~~~~~k~Il~~v~k~~~-l~~~~~~Le~~~~D-~~Rl~~ 374 (619)
T PF03999_consen 302 CHYSEEERQAFTPFYIDSYT-----EELLELHEEEIERLKEEYESRKPILELVEKWES-LWEEMEELEESSKD-PSRLNN 374 (619)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--CCGG--
T ss_pred hCCCHHHHHHHHHHhcccch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcC-hhhhcc
Confidence 43333333332222211111 222344566777777777766555544443322 22222222222222 334444
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 045448 468 VEVTLQTLQKLHSQSQHEQKALTLELQ 494 (1756)
Q Consensus 468 ~E~al~~Le~l~sqsQeE~~~La~El~ 494 (1756)
-..+|+--|+.-...+-.+=.|..+|.
T Consensus 375 RGg~LLkEEk~rk~i~k~lPkle~~L~ 401 (619)
T PF03999_consen 375 RGGHLLKEEKERKRIQKKLPKLEEELK 401 (619)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 444444444444444433333333333
No 325
>PRK11519 tyrosine kinase; Provisional
Probab=38.69 E-value=1.1e+03 Score=32.23 Aligned_cols=39 Identities=15% Similarity=0.163 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhc
Q 045448 191 TLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGG 229 (1756)
Q Consensus 191 kI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~E 229 (1756)
+......-.+|+..++...+.++...|..++.++.+-.-
T Consensus 261 k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~ 299 (719)
T PRK11519 261 KSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDS 299 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 334455677899999999999999999999998876543
No 326
>PRK04325 hypothetical protein; Provisional
Probab=38.64 E-value=1.5e+02 Score=29.31 Aligned_cols=45 Identities=20% Similarity=0.241 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 045448 376 QCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLE 420 (1756)
Q Consensus 376 q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le 420 (1756)
.+.++|..||.++..-+..++.||.-+-.-...+..++.++..|-
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~ 50 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLY 50 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678888888888888888888888777666666666444443
No 327
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=38.38 E-value=1.1e+03 Score=31.50 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHH
Q 045448 469 EVTLQTLQKLHSQSQHEQKALTL 491 (1756)
Q Consensus 469 E~al~~Le~l~sqsQeE~~~La~ 491 (1756)
|..+.+--.++.++|.+...+..
T Consensus 455 ee~~s~~~~~~e~~q~e~~~~Q~ 477 (607)
T KOG0240|consen 455 EELLSSTRRLYEDIQQELSEIQE 477 (607)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHH
Confidence 33344444555555555555544
No 328
>PHA03011 hypothetical protein; Provisional
Probab=37.91 E-value=1.9e+02 Score=30.34 Aligned_cols=55 Identities=18% Similarity=0.200 Sum_probs=49.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q 045448 309 NEKEAGLLQYKQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGL 363 (1756)
Q Consensus 309 aEkEa~llQykQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~L 363 (1756)
.-.|...+||+.+.....-+++.+..++.-++.+...+--++.+++.|+..++.+
T Consensus 64 e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN~ 118 (120)
T PHA03011 64 EILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIANL 118 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhcc
Confidence 3466677889999999999999999999999999999999999999999998543
No 329
>PF15294 Leu_zip: Leucine zipper
Probab=37.51 E-value=8.6e+02 Score=29.86 Aligned_cols=91 Identities=26% Similarity=0.264 Sum_probs=60.0
Q ss_pred hhHHhhhhhhhhhhHHHHHHHHhHHHHHHHHHhhhhhhhhhHHHHHhhHHHHHHH---HHHHHHHHhHHhHhhhhhHHHH
Q 045448 707 VTLEHSLAGANVELEGLRAKSKSLEDFCRMLKNEKSNLLNERSTLVSQLEDVEKR---LGNLERRFTKLEEKYADIEREK 783 (1756)
Q Consensus 707 s~LE~SLSd~n~ELe~lR~K~K~lEEscq~l~~ekS~L~~Ek~~L~SQL~~~t~~---l~~Le~k~t~LE~~~s~~~~Ek 783 (1756)
.+|-.-..+++.|.+.+|.+++.+|.-|.....|++.|.+.-..|=. ++..... +-.=....+.||.+...++.+.
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~-~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ 206 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD-EQGDQKGKKDLSFKAQDLSDLENKMAALKSEL 206 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhccccccccccchhhHHHHHHHHHHHH
Confidence 45778899999999999999999999999998877777654433322 1111111 1122334667788888887777
Q ss_pred hHhHHHHHHHHHHHH
Q 045448 784 ESTLSQVEELRYSLT 798 (1756)
Q Consensus 784 e~~~~qv~~L~~~L~ 798 (1756)
+.+......-+..|.
T Consensus 207 ek~~~d~~~~~k~L~ 221 (278)
T PF15294_consen 207 EKALQDKESQQKALE 221 (278)
T ss_pred HHHHHHHHHHHHHHH
Confidence 776655544443333
No 330
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=36.82 E-value=3.7e+02 Score=31.78 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 045448 285 GLNERASKAEIEAQKLKQELSRLENEKEAGLLQ 317 (1756)
Q Consensus 285 ~L~ERa~kAE~Ele~LKqeL~~lEaEkEa~llQ 317 (1756)
.+.+...+++.+++....+++..+...++..-|
T Consensus 155 ~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq 187 (216)
T KOG1962|consen 155 KLKADLEKLETELEKKQKKLEKAQKKVDALKKQ 187 (216)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555544444433
No 331
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=36.81 E-value=57 Score=31.67 Aligned_cols=61 Identities=18% Similarity=0.271 Sum_probs=49.6
Q ss_pred HHhHHHHHHHHhhhhcccccchhhhHHHHHHHhhhhhhhhhhhhhhcccchhHHHhhhhhHHHHHHhh
Q 045448 1287 LENKVHELAEVCESLEDGSATKSLESKQMKERIGSLESEIGRLKSRLSSYDPVIASLKDNITSLELNI 1354 (1756)
Q Consensus 1287 ~e~kv~El~~~c~~le~~~~~k~~~i~~lkerv~~lE~En~~Lk~~Lsay~p~i~sL~~~v~sLE~~t 1354 (1756)
++.||-.|+..|.-|.. +-..|+..+..+..|.+.|......--.=|-++=..+.+||.+|
T Consensus 5 Le~kle~Li~~~~~L~~-------EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq~~ 65 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKS-------ENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQHT 65 (65)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Confidence 68899999999999984 45678999999999999999888877766777766777777654
No 332
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.71 E-value=1.2e+03 Score=31.20 Aligned_cols=125 Identities=14% Similarity=0.119 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 381 IAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLER----ANHSLQVEAESLVQKIAIKDQELSQKQRELENLQA 456 (1756)
Q Consensus 381 IseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~----ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs 456 (1756)
|+.++.++....++..+|-..++.+..+.+.+.+.|..|-. .+-.+-.-=..-.+.++-...++.+.++-++.+..
T Consensus 604 l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~ 683 (741)
T KOG4460|consen 604 LSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTM 683 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 36677777777777777777777777777777776554411 01000000001112223333344444444444444
Q ss_pred HHHHHHHhHhhHHHHH-----HHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 045448 457 SLQDEQSRFAQVEVTL-----QTLQKLHSQSQHEQKALTLELQNKLQKMKDMEV 505 (1756)
Q Consensus 457 ~IqdE~~K~~q~E~al-----~~Le~l~sqsQeE~~~La~El~~~~~~L~~lE~ 505 (1756)
.+..-....-++=+++ -.=++.+++.|+=+..|+.++..-.++.+++++
T Consensus 684 ~~~KQ~~H~~~v~~al~K~~Y~l~~~Q~~~iqsiL~~L~~~i~~~~k~VK~i~~ 737 (741)
T KOG4460|consen 684 KKDKQQQHMEKVLSALPKPTYILSAYQRKCIQSILKELGEHIREMVKQVKDIRN 737 (741)
T ss_pred HHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333221111221111 122667888888888888777766666666554
No 333
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=36.25 E-value=86 Score=29.64 Aligned_cols=37 Identities=16% Similarity=0.315 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045448 324 MIYALESKISLAEENAGMLNEQTEKAETEVKALKQAL 360 (1756)
Q Consensus 324 kIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL 360 (1756)
+|++|++++..+...+..+..+.+.+...++.+++.+
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777776666666666666666665
No 334
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=36.12 E-value=1.5e+03 Score=32.30 Aligned_cols=215 Identities=15% Similarity=0.258 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHHHHHH-HhhhhcHHHHH
Q 045448 185 LETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLDERASKADIEVKVLKEALIRLE-AERDAGLLQYN 263 (1756)
Q Consensus 185 IdeLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~eRA~kAE~EIqsLKetLakLE-sekdasllQyq 263 (1756)
+...-.++..++..-..++..+....+++..++..+..+-++|..+-+|-... ..|..+....--+. .+.+.. |+
T Consensus 176 ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~-~~Ie~l~~k~~~v~y~~~~~e---y~ 251 (1072)
T KOG0979|consen 176 LLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKK-SKIELLEKKKKWVEYKKHDRE---YN 251 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccccchHhhhHH---HH
Confidence 33444455555555555555666666677777777777777777666554433 23333322222121 111112 33
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 045448 264 HCLERISTLEKMIIQAQEDSKGLNERASKAEIEAQKLKQELSRLENEKEAGLLQYKQCLEMIYALESKISLAEENAGMLN 343 (1756)
Q Consensus 264 q~lErLS~LE~~Ls~AQeelk~L~ERa~kAE~Ele~LKqeL~~lEaEkEa~llQykQ~lEkIseLEkKIs~lEe~v~sln 343 (1756)
....-...++..+..+.++...+.......+.+...+..+++....+..++....++..+++...++.+..+..+...+.
T Consensus 252 ~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk 331 (1072)
T KOG0979|consen 252 AYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLK 331 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444455455555555555556666666777777777777777777788888888888888888877777777
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 045448 344 EQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFN-AQEHAKQLNSEILM 404 (1756)
Q Consensus 344 qrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELse-aeeev~rLn~EiE~ 404 (1756)
.+.+.....+...++.|..+..+-. -+..+.+.-..+.++-.++.+ -.+.+...+++++.
T Consensus 332 ~~~~~rq~~i~~~~k~i~~~q~el~-~~~~~e~~~~~~~ei~~~~~~~~~~~~~~~~~~id~ 392 (1072)
T KOG0979|consen 332 KAAEKRQKRIEKAKKMILDAQAELQ-ETEDPENPVEEDQEIMKEVLQKKSSKLRDSRQEIDA 392 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh-hcCCccccchhHHHHHHHHHHHHhhhhhhhhhhhhH
Confidence 7666666666666666554444332 233455555555444443333 33333334444433
No 335
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=36.03 E-value=5.7e+02 Score=27.34 Aligned_cols=33 Identities=9% Similarity=0.242 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045448 328 LESKISLAEENAGMLNEQTEKAETEVKALKQAL 360 (1756)
Q Consensus 328 LEkKIs~lEe~v~slnqrierle~Ei~~LkqEL 360 (1756)
|.+-+..++....+.++++.-++..++.+...+
T Consensus 42 L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 42 LRNALQSLQAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444445555555555554444444
No 336
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=35.88 E-value=3.6e+02 Score=29.84 Aligned_cols=37 Identities=24% Similarity=0.452 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCCCcc
Q 045448 563 SNALQLEVRHLKEEIMGLSRRYQALVEQVLSVGLNPE 599 (1756)
Q Consensus 563 ~~~LQ~Ei~~~KeE~~~Ln~~~~~l~E~~~s~~l~~~ 599 (1756)
..++..++..+++++..|...+..+..++.++.-.|+
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t 110 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPT 110 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3344444555555555555555555555555544443
No 337
>PRK00295 hypothetical protein; Provisional
Probab=35.79 E-value=1.9e+02 Score=28.17 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 045448 378 LDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLE 420 (1756)
Q Consensus 378 lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le 420 (1756)
-++|..||.++...+..++.||..+-.....+..++.++..|-
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~ 46 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALI 46 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888888888888777666666666444443
No 338
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=35.30 E-value=6.5e+02 Score=27.78 Aligned_cols=48 Identities=25% Similarity=0.258 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 045448 323 EMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAI 370 (1756)
Q Consensus 323 EkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal 370 (1756)
-+|.+|.++|..++......++.+-.+..=.++|+.++.+|+.||-.+
T Consensus 6 P~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhL 53 (134)
T PF15233_consen 6 PQIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHL 53 (134)
T ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 468889999999999999999999999999999999999999988655
No 339
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=34.62 E-value=3.9e+02 Score=27.36 Aligned_cols=70 Identities=14% Similarity=0.237 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhh---hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 328 LESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNE---EKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQ 397 (1756)
Q Consensus 328 LEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~Lee---EKeal~l~y~q~lekIseLE~ELseaeeev~r 397 (1756)
....|..+......+..+++.++.+...+.+.|..+-. +.+.+...-....+.|..++..+..++..+..
T Consensus 27 ~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 27 DVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555555555445455433332 34445555555555555555555555544443
No 340
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=34.49 E-value=4.5e+02 Score=27.05 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045448 320 QCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQAL 360 (1756)
Q Consensus 320 Q~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL 360 (1756)
...+-+..|+.++..++..+..++..+..+..++..++.+|
T Consensus 60 ~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l 100 (105)
T cd00632 60 EKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKI 100 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666677777666666666666666
No 341
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=33.27 E-value=2.6e+02 Score=31.53 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 045448 321 CLEMIYALESKISLAEENAGMLNEQTEKA 349 (1756)
Q Consensus 321 ~lEkIseLEkKIs~lEe~v~slnqrierl 349 (1756)
|..++..+..++..++........+.+..
T Consensus 116 ~I~r~~~li~~l~~~~~~~~~~~kq~~~~ 144 (192)
T PF05529_consen 116 VIRRVHSLIKELIKLEEKLEALKKQAESA 144 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44666666666666666665555554443
No 342
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=33.11 E-value=7.1e+02 Score=27.82 Aligned_cols=45 Identities=13% Similarity=0.304 Sum_probs=23.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHH
Q 045448 338 NAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMES 386 (1756)
Q Consensus 338 ~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ 386 (1756)
.+..+..+++.+..++..|..++..|+ .+...+..|.+.|+.++.
T Consensus 7 ~le~l~a~lq~l~~qie~L~~~i~~l~----~~~~e~~~~~~tl~~lk~ 51 (145)
T COG1730 7 ELEELAAQLQILQSQIESLQAQIAALN----AAISELQTAIETLENLKG 51 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Confidence 344455555566666666666654443 233444455555555543
No 343
>PRK00736 hypothetical protein; Provisional
Probab=32.67 E-value=2e+02 Score=27.92 Aligned_cols=42 Identities=7% Similarity=0.221 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 045448 379 DKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLE 420 (1756)
Q Consensus 379 ekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le 420 (1756)
.+|..||.++...+..++.||..+-.-...+..+..++..|-
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~ 46 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALT 46 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888888888777666666665444443
No 344
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=31.96 E-value=5.8e+02 Score=26.21 Aligned_cols=20 Identities=10% Similarity=0.160 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhhHHHHHH
Q 045448 328 LESKISLAEENAGMLNEQTE 347 (1756)
Q Consensus 328 LEkKIs~lEe~v~slnqrie 347 (1756)
+..++..++..+..+.....
T Consensus 22 k~~~~~~lE~k~~rl~~Ek~ 41 (96)
T PF08647_consen 22 KVKELTILEQKKLRLEAEKA 41 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 345
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=31.93 E-value=62 Score=36.43 Aligned_cols=45 Identities=27% Similarity=0.471 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHH
Q 045448 535 IQNLQNEIFNLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIMGLSRR 583 (1756)
Q Consensus 535 i~~L~~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln~~ 583 (1756)
+..+...+..--|.+.=||.|+ +++..|..+++++|+|..+|.-.
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqE 46 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQE 46 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH-------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666677777788887 79999999999999999988754
No 346
>PRK02119 hypothetical protein; Provisional
Probab=31.77 E-value=1.8e+02 Score=28.72 Aligned_cols=43 Identities=21% Similarity=0.162 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 045448 320 QCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTG 362 (1756)
Q Consensus 320 Q~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~ 362 (1756)
.+.++|.+||.+++..+..+..+|.-+-+-..+++.|+..+..
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~ 48 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRY 48 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557889999999999999999998888888888888877733
No 347
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=31.54 E-value=1.7e+02 Score=36.44 Aligned_cols=126 Identities=23% Similarity=0.276 Sum_probs=86.5
Q ss_pred HHHhhHHHHHHHHHhHHHHHHHHhhhhhhchHHHhhhhhhhhhHHHHHHh------hhhhhHhHHHHHH-----------
Q 045448 1224 LQEVNKSLEAEVGILHDEIEEHRIREVYLSSELQERSNEFELWESEATSF------YFDLQMSSTREVL----------- 1286 (1756)
Q Consensus 1224 l~e~n~~L~~e~~~l~~e~~~~~~re~~l~~el~~~~~e~~~~e~e~~~~------~~dlq~ssv~~~l----------- 1286 (1756)
|+.+|+.....+...+.++.+.|.+=+.+..-||....|..-...||... |.|+-.-++-+-.
T Consensus 3 Lk~~nR~~~~~~~~~k~~t~e~k~~vD~~~LqLqNl~YE~~hL~kEI~~C~~F~s~~~~i~Lv~~eEF~~~ap~~~~~~~ 82 (355)
T PF09766_consen 3 LKQLNRAAQFRIKKAKDETAEAKQEVDALHLQLQNLLYEKSHLQKEIKKCLDFKSKYEDIELVPVEEFYAKAPEEISDPE 82 (355)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCCCcCccHHHHHHhChhhccccc
Confidence 67889999999999999999999888888888888888888888888732 2222222222111
Q ss_pred -HHhHHHHHHHHhhhhcccccch---hhhHHHHHHHhhhhhhhhhhhhhhcccchhHHHhhhhhHHHHH
Q 045448 1287 -LENKVHELAEVCESLEDGSATK---SLESKQMKERIGSLESEIGRLKSRLSSYDPVIASLKDNITSLE 1351 (1756)
Q Consensus 1287 -~e~kv~El~~~c~~le~~~~~k---~~~i~~lkerv~~lE~En~~Lk~~Lsay~p~i~sL~~~v~sLE 1351 (1756)
-..--|++|-+.=..| -..| ....+.|+.+-..|..+|...+..|+...|.+.+|.+...-+-
T Consensus 83 ~~~~~~H~lml~RL~~E--L~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq 149 (355)
T PF09766_consen 83 LTEDDEHQLMLARLEFE--LEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQ 149 (355)
T ss_pred cCCCChHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 1122333433322222 2222 3467788888999999999999999988888888887766663
No 348
>PRK00295 hypothetical protein; Provisional
Probab=31.45 E-value=2.6e+02 Score=27.17 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045448 322 LEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQAL 360 (1756)
Q Consensus 322 lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL 360 (1756)
.++|.+|+.+++..+..+..+|.-+-+-..+++.|...+
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql 42 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQM 42 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999888888888888888888887777
No 349
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=31.09 E-value=6.8e+02 Score=29.50 Aligned_cols=51 Identities=25% Similarity=0.387 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHHH
Q 045448 184 ELETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLDERA 234 (1756)
Q Consensus 184 EIdeLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~eRA 234 (1756)
.|..|+..|..++.............+..|...-..-+..|+++++|-+|-
T Consensus 33 ~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK 83 (207)
T PF05546_consen 33 EIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRK 83 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 566777777777777777777777777777777777777888888776653
No 350
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=31.09 E-value=1.1e+03 Score=28.96 Aligned_cols=97 Identities=16% Similarity=0.226 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 045448 485 EQKALTLELQNKLQKMKDMEVCNHDLEEGIEQVKRENQSLVELNSSSTITIQNLQNEIFNLKEMKEKLEKEIALQEDKSN 564 (1756)
Q Consensus 485 E~~~La~El~~~~~~L~~lE~~k~~l~~~~~~~~ee~~~L~eln~sS~~~i~~L~~Ei~~lke~~~~LE~Ev~~~v~~~~ 564 (1756)
.++.||.+|...--.|=|+=..-.++...-...-.-.-.+++..-.=...|+.+..++...+.++.++.. .-.
T Consensus 121 ~~R~Laseit~~GA~LydlL~kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~-------de~ 193 (267)
T PF10234_consen 121 AARQLASEITQRGASLYDLLGKEVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLAS-------DEA 193 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence 3677888887777767765443334444444333333334444444455778888888888888888887 555
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHH
Q 045448 565 ALQLEVRHLKEEIMGLSRRYQALV 588 (1756)
Q Consensus 565 ~LQ~Ei~~~KeE~~~Ln~~~~~l~ 588 (1756)
.|..-|...|-|..-..+|.++|.
T Consensus 194 ~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 194 NLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888888766665
No 351
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=31.03 E-value=2.4e+02 Score=32.92 Aligned_cols=79 Identities=23% Similarity=0.331 Sum_probs=57.8
Q ss_pred HhhhchhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHhhhhhhhhHHHHhHHHhhHH
Q 045448 1151 IFIGHDSLRQKASDLLEAEQKLKATHNLNVELCITVEDLKRECDELKLIKENAEKRILEISRDCSKQERELECLQEVNKS 1230 (1756)
Q Consensus 1151 ~~~~~~~l~~k~~~lle~~~~~~~~~~~~~el~~~v~~l~~~~~e~~~~~~~~e~~i~~ls~~~~~q~~ei~~l~e~n~~ 1230 (1756)
++-||...-|-..+---|..+.+.+...|.+|.+.|-++|.+|+-++...++. ++|- --..++||.-|.+.|.-
T Consensus 173 vAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~-r~ie-----Ekk~~eei~fLk~tN~q 246 (259)
T KOG4001|consen 173 VAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEE-REIE-----EKKMKEEIEFLKETNRQ 246 (259)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHH-HHHH-----HHHHHHHHHHHHHHHHH
Confidence 33455555555556666778899999999999999999999999877655442 3332 22346799999999998
Q ss_pred HHHHH
Q 045448 1231 LEAEV 1235 (1756)
Q Consensus 1231 L~~e~ 1235 (1756)
|.+-+
T Consensus 247 LKaQL 251 (259)
T KOG4001|consen 247 LKAQL 251 (259)
T ss_pred HHHHH
Confidence 87654
No 352
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=31.01 E-value=9.4e+02 Score=28.35 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhHHHHH
Q 045448 446 QKQRELENLQASLQDEQSRFAQVEVTL 472 (1756)
Q Consensus 446 eKqeE~e~Lqs~IqdE~~K~~q~E~al 472 (1756)
....++..|...++.|..-+++-|..+
T Consensus 125 ~l~~~l~~l~~~~~~Er~~R~erE~~i 151 (247)
T PF06705_consen 125 ELVRELNELQEAFENERNEREEREENI 151 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777777766654
No 353
>PRK04325 hypothetical protein; Provisional
Probab=30.92 E-value=1.9e+02 Score=28.59 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045448 319 KQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQAL 360 (1756)
Q Consensus 319 kQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL 360 (1756)
+.+.++|.+||.+++..+..+..+|.-+-+-..+++.|...+
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql 46 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQL 46 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999888888888888887777
No 354
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=30.84 E-value=8.2e+02 Score=27.61 Aligned_cols=106 Identities=21% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHhHHHHHHHHHHHhHhhhcccccchhhhHHHHHHHhhHHHHHHhhhhHHH
Q 045448 606 KELQEENSKLKEVCKEQGDEKEVLHEKLKNMDNLLKKNAALEGSLSEMNIKLEGSGERVNDLQKSCQFLREEKSSLVAEK 685 (1756)
Q Consensus 606 ~~Lq~en~kLkE~~~~~~~Ek~~l~ekl~~~e~L~~k~~~le~sls~~~~ele~lr~~vk~Lqe~~~~Lke~~s~~~sEK 685 (1756)
...|-......|.-+.+..-...|+ .--+=+..+...+-.-+..+|-+++.++.+...=+-+...-.+..+.-+.||
T Consensus 52 ekVq~~LgrveEetkrLa~ireeLE---~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK 128 (159)
T PF04949_consen 52 EKVQAQLGRVEEETKRLAEIREELE---VLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEK 128 (159)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH---hhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhhhhhHHHHHHHHhHHHHHHHH
Q 045448 686 ATLLSQLQIMTENMQKLLEKNVTLEHSLAGANVELEGLRAKSKSLEDFCRML 737 (1756)
Q Consensus 686 ~aL~~qlq~~~~~m~kLlEkns~LE~SLSd~n~ELe~lR~K~K~lEEscq~l 737 (1756)
+.|+..|-.+ -=++=|.+.|.|||.+..+
T Consensus 129 ~~Lv~~L~eL-----------------------v~eSE~~rmKKLEELsk~i 157 (159)
T PF04949_consen 129 AQLVTRLMEL-----------------------VSESERLRMKKLEELSKEI 157 (159)
T ss_pred HHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHhhc
No 355
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=30.79 E-value=7.3e+02 Score=26.99 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045448 323 EMIYALESKISLAEENAGMLNEQTEKAETEVKALKQAL 360 (1756)
Q Consensus 323 EkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL 360 (1756)
+-+++|+.++..++..+..+..+-.+++..++.|+..|
T Consensus 70 ~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i 107 (119)
T COG1382 70 EAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666666666666666666
No 356
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=30.66 E-value=1.1e+03 Score=28.94 Aligned_cols=37 Identities=3% Similarity=0.192 Sum_probs=18.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 422 ANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASL 458 (1756)
Q Consensus 422 ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~I 458 (1756)
++..+...+..+..+++.++-+-......+..+++.+
T Consensus 222 e~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV 258 (269)
T PF05278_consen 222 EVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKV 258 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555554444444444444
No 357
>PRK04406 hypothetical protein; Provisional
Probab=30.55 E-value=1.7e+02 Score=28.98 Aligned_cols=42 Identities=19% Similarity=0.307 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 045448 320 QCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALT 361 (1756)
Q Consensus 320 Q~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~ 361 (1756)
.+..+|.+||.+|+..+..+..+|.-+-+-..+++.|...+.
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~ 49 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMK 49 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355788889999988888888888888888888888877773
No 358
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=30.39 E-value=2.4e+02 Score=37.02 Aligned_cols=40 Identities=33% Similarity=0.380 Sum_probs=19.2
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 419 LERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASL 458 (1756)
Q Consensus 419 Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~I 458 (1756)
||...++|+.+++++..+|..+.+.|..+|.|+..|+..|
T Consensus 98 le~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~i 137 (907)
T KOG2264|consen 98 LEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEI 137 (907)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHH
Confidence 3334444444555555555555555555554444444433
No 359
>PRK12705 hypothetical protein; Provisional
Probab=30.20 E-value=1.4e+03 Score=30.22 Aligned_cols=35 Identities=9% Similarity=0.138 Sum_probs=19.6
Q ss_pred HHhHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 045448 462 QSRFAQVEVTLQTLQKLHSQSQHEQKALTLELQNK 496 (1756)
Q Consensus 462 ~~K~~q~E~al~~Le~l~sqsQeE~~~La~El~~~ 496 (1756)
.+-+...|+.-..+...-..+..|...+..++...
T Consensus 135 ia~lt~~eak~~l~~~~~~~~~~e~~~~i~~~e~~ 169 (508)
T PRK12705 135 VAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEEE 169 (508)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555666666666666666666555443
No 360
>PRK02793 phi X174 lysis protein; Provisional
Probab=30.19 E-value=1.8e+02 Score=28.62 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 045448 321 CLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALT 361 (1756)
Q Consensus 321 ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~ 361 (1756)
+..+|.+||.+|+..+..+..+|.-+-+-..+++.|...+.
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~ 46 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLR 46 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999999998888888888888887773
No 361
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=29.81 E-value=3e+02 Score=26.32 Aligned_cols=17 Identities=24% Similarity=0.077 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045448 389 FNAQEHAKQLNSEILMG 405 (1756)
Q Consensus 389 seaeeev~rLn~EiE~l 405 (1756)
..+.++..|-|..++..
T Consensus 34 ~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 34 QAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34444555555555443
No 362
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=29.78 E-value=9.1e+02 Score=27.78 Aligned_cols=71 Identities=24% Similarity=0.336 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 045448 426 LQVEAESLVQKIAIKDQELSQKQRELENLQASLQD---EQSRFAQVEVTLQTLQKLHSQSQHEQKALTLELQNK 496 (1756)
Q Consensus 426 Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~Iqd---E~~K~~q~E~al~~Le~l~sqsQeE~~~La~El~~~ 496 (1756)
....++.....|......|..+..+++.+...... +.+.+..-|+.-.+|+++-..+..|.-.+...+...
T Consensus 104 ~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~~~~Le~iAglT~eEAk~~Ll~~le~e~~~e~a~~ir~~eee 177 (201)
T PF12072_consen 104 REEELEKKEEELEQRKEELEEREEELEELIEEQQQELEEIAGLTAEEAKEILLEKLEEEARREAAALIRRIEEE 177 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444445555555555544433333 333444455555666666666666666666555443
No 363
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=29.71 E-value=37 Score=32.35 Aligned_cols=26 Identities=38% Similarity=0.581 Sum_probs=22.8
Q ss_pred hHHHHHHHhhhhhhhhhhhhhhcccc
Q 045448 1311 ESKQMKERIGSLESEIGRLKSRLSSY 1336 (1756)
Q Consensus 1311 ~i~~lkerv~~lE~En~~Lk~~Lsay 1336 (1756)
-|..|-+|++.|..||.|||+++.+-
T Consensus 26 sV~El~eRIalLq~EIeRlkAe~~kK 51 (65)
T COG5509 26 SVAELEERIALLQAEIERLKAELAKK 51 (65)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36678899999999999999999764
No 364
>PRK04406 hypothetical protein; Provisional
Probab=29.63 E-value=2.4e+02 Score=28.03 Aligned_cols=43 Identities=12% Similarity=0.188 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 045448 377 CLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLL 419 (1756)
Q Consensus 377 ~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~L 419 (1756)
+-.||..||..+.+.+..++.||..+-.....+..++.++..|
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457788888888888888888777777666665555533333
No 365
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=29.49 E-value=1.1e+03 Score=28.46 Aligned_cols=66 Identities=12% Similarity=0.108 Sum_probs=29.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHH
Q 045448 369 AIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLV 434 (1756)
Q Consensus 369 al~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~ 434 (1756)
..+..|...-.++..|+.++..+=...+=-=+....+...++..+..+..|+..+......|..-.
T Consensus 146 ~~~~~~~~ae~~v~~Lek~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~AL 211 (239)
T PF05276_consen 146 RRARIYNEAEQRVQQLEKKLKRAIKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAKSRYSEAL 211 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666655544333322233333334444444433333334444444444333
No 366
>PRK02793 phi X174 lysis protein; Provisional
Probab=29.27 E-value=2.4e+02 Score=27.70 Aligned_cols=43 Identities=16% Similarity=0.194 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 045448 377 CLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLL 419 (1756)
Q Consensus 377 ~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~L 419 (1756)
+..||..||..+.+.+..+..||.-+-.....+..+..++..|
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788888888888888888887777666665555533333
No 367
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=28.97 E-value=6.8e+02 Score=26.08 Aligned_cols=38 Identities=26% Similarity=0.337 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045448 323 EMIYALESKISLAEENAGMLNEQTEKAETEVKALKQAL 360 (1756)
Q Consensus 323 EkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL 360 (1756)
+-+..|++++..++..+..++.....++..+..++..+
T Consensus 67 e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 67 EAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKI 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666665555555555555555555555554
No 368
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.96 E-value=1.4e+03 Score=29.83 Aligned_cols=37 Identities=14% Similarity=0.128 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhh
Q 045448 328 LESKISLAEENAGMLNEQTEKAETEVKALKQALTGLN 364 (1756)
Q Consensus 328 LEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~Le 364 (1756)
+...|...-.+++.+.+.+-++-.|+..|++++.++-
T Consensus 387 ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~s 423 (521)
T KOG1937|consen 387 YTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSES 423 (521)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666677777777777777777764443
No 369
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=28.84 E-value=1e+03 Score=27.98 Aligned_cols=109 Identities=19% Similarity=0.290 Sum_probs=51.8
Q ss_pred HHHHHHHhhHHhhhhhhhhhhHHHHHHHHhHHHHHHHHHhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHhHHhHhhhhh
Q 045448 700 QKLLEKNVTLEHSLAGANVELEGLRAKSKSLEDFCRMLKNEKSNLLNERSTLVSQLEDVEKRLGNLERRFTKLEEKYADI 779 (1756)
Q Consensus 700 ~kLlEkns~LE~SLSd~n~ELe~lR~K~K~lEEscq~l~~ekS~L~~Ek~~L~SQL~~~t~~l~~Le~k~t~LE~~~s~~ 779 (1756)
-+||.+-..=-..|++++..|..-..-...-+. +++.--..|.+| |+.+|. ..+++=+.+-.|=.+|-.+
T Consensus 8 ~~lld~l~~Nnr~L~~L~~dl~~~~~~~~~~e~---~~~~KY~~lR~E---lI~ELk----qsKklydnYYkL~~KY~~L 77 (196)
T PF15272_consen 8 LELLDQLDQNNRALSDLNQDLRERDERYELQET---SYKEKYQQLRQE---LINELK----QSKKLYDNYYKLYSKYQEL 77 (196)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhhh---HHHHHHHHHHHH---HHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 334444444445567777766665555444443 355555555444 444443 2344555555555555555
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHH
Q 045448 780 EREKESTLSQVEELRYSLTNEQLERANYVQSSESRMVDLESLV 822 (1756)
Q Consensus 780 ~~Eke~~~~qv~~L~~~L~~e~e~~~~~~~s~e~~l~~le~~i 822 (1756)
++ ...+..+++..+..=..+++..+-.-..+...+..++
T Consensus 78 K~----~~~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l 116 (196)
T PF15272_consen 78 KK----SSKQSEDLQSRISNLEKQLVDQMIEKDREIRTLQDEL 116 (196)
T ss_pred HH----HhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44 3444444444444333333333333333333333333
No 370
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=28.50 E-value=3.2e+02 Score=31.22 Aligned_cols=44 Identities=32% Similarity=0.361 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhhh
Q 045448 562 KSNALQLEVRHLKEEIMGLSRRYQALVEQVLSVGLNPEHLGSAVKELQEENSKLKEVCKEQGD 624 (1756)
Q Consensus 562 ~~~~LQ~Ei~~~KeE~~~Ln~~~~~l~E~~~s~~l~~~s~~~~i~~Lq~en~kLkE~~~~~~~ 624 (1756)
..++||+....+--|+..|.. .| .+.++|.++.+|+++|+..+.
T Consensus 94 k~q~l~~t~s~veaEik~L~s------------~L-------t~eemQe~i~~L~kev~~~~e 137 (201)
T KOG4603|consen 94 KVQSLQQTCSYVEAEIKELSS------------AL-------TTEEMQEEIQELKKEVAGYRE 137 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------hc-------ChHHHHHHHHHHHHHHHHHHH
Confidence 667777888887777777764 12 357788888888888876654
No 371
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.28 E-value=4.4e+02 Score=33.01 Aligned_cols=139 Identities=17% Similarity=0.177 Sum_probs=0.0
Q ss_pred ccccCCCCccccccCCCCCCCCCCCCCCCCCCCCCCccccCCCchhhhhccccccchhhhhhccCCCCCCcccccccchh
Q 045448 65 MSEAFPNQVPYVIRDDSTLGSSGPEGEPHTPEMLHPIRALVDPDDLQKDALGFSSTNLHALKRNGMYSEESDSGISKRGL 144 (1756)
Q Consensus 65 ia~afP~qv~~~~~dds~~~s~~~~~~p~tp~~~~~~~~~~d~~~~~kd~~g~~~~~~~~~k~~g~~~~~s~~~~skk~~ 144 (1756)
++...|.+++ +-.|..++++...|-.|..|+|..+-+.| +...+....+..+.
T Consensus 149 ~p~p~p~~~~----~~~p~~p~~~~~~~p~p~p~~~~gas~~~-----------------------~~~~d~~~~yp~n~ 201 (365)
T KOG2391|consen 149 PPPPYPQTEY----NTPPLKPKGSAYKPPLPPPPPPGGASALP-----------------------YMTDDNAEPYPPNA 201 (365)
T ss_pred CCCCCCcccC----CCCCCCCCCcCcCCCCCCCCCCCccccCc-----------------------ccCCCCCCcCCCCc
Q ss_pred hhhhcccCCCCCCcccchhhhcccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 045448 145 KQLNEMFGSGEMVPQNSKLAEGRIRKGMTVHEAEDKADSELETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQ 224 (1756)
Q Consensus 145 ~~~s~~~~s~~~~~~~~~~~~~~~~~~ls~s~r~~eaEeEIdeLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~Q 224 (1756)
.+..-+-++.-.+...+. ...+++++.+++.....|.+-.+.+..-.+++......+|++..++|
T Consensus 202 ~~~~~irasvisa~~ekl---------------R~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~ 266 (365)
T KOG2391|consen 202 SGKLVIRASVISAVREKL---------------RRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQ 266 (365)
T ss_pred ccccchhHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhcHHHHHhhHHHHHHHHH
Q 045448 225 KDAGGLDERASKADIEVKVLK 245 (1756)
Q Consensus 225 Kel~EL~eRA~kAE~EIqsLK 245 (1756)
+...=|.....+|-.....++
T Consensus 267 ~niDIL~~k~~eal~~~~n~~ 287 (365)
T KOG2391|consen 267 KNIDILKSKVREALEKAENLE 287 (365)
T ss_pred hhhHHHHHHHHHHHhhhccCc
No 372
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=28.21 E-value=3.6e+02 Score=26.07 Aligned_cols=31 Identities=39% Similarity=0.524 Sum_probs=23.2
Q ss_pred hHHHHhHHHhhHHHHHHHHHhHHHHHHHHhh
Q 045448 1218 ERELECLQEVNKSLEAEVGILHDEIEEHRIR 1248 (1756)
Q Consensus 1218 ~~ei~~l~e~n~~L~~e~~~l~~e~~~~~~r 1248 (1756)
...+.--..=|..|+.+|..|+.++++.|.|
T Consensus 31 e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 31 ESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3444555666899999999999999998865
No 373
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=28.07 E-value=1e+03 Score=27.73 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=7.6
Q ss_pred HHHHHHHhhhhhhHHHHHHhh
Q 045448 354 KALKQALTGLNEEKEAIAFRY 374 (1756)
Q Consensus 354 ~~LkqEL~~LeeEKeal~l~y 374 (1756)
..|+..|..+..-+..+...+
T Consensus 123 ~~L~~ki~~~k~k~~~l~ar~ 143 (219)
T TIGR02977 123 AKLQAKLAEARARQKALAIRH 143 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 374
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.80 E-value=2e+03 Score=31.09 Aligned_cols=614 Identities=12% Similarity=0.085 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHH---HHhhHHHHHHHHHHHHHHHH
Q 045448 176 EAEDKADSELETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLDE---RASKADIEVKVLKEALIRLE 252 (1756)
Q Consensus 176 ~r~~eaEeEIdeLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~e---RA~kAE~EIqsLKetLakLE 252 (1756)
++..++...++.++..+..+.-..+.-...+......+......+...+..+..... ........+..+...+..++
T Consensus 187 ~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (1042)
T TIGR00618 187 AKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLR 266 (1042)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q ss_pred HhhhhcHHHHHhHHHHHHHHHH-----HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 045448 253 AERDAGLLQYNHCLERISTLEK-----MIIQAQEDSKGLNERASKAEIEAQKLKQELSRLENEKEAGLLQYKQCLEMIYA 327 (1756)
Q Consensus 253 sekdasllQyqq~lErLS~LE~-----~Ls~AQeelk~L~ERa~kAE~Ele~LKqeL~~lEaEkEa~llQykQ~lEkIse 327 (1756)
.. +......+..+.. ..................+..+...+...+..........+.++.........
T Consensus 267 ~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (1042)
T TIGR00618 267 AR-------IEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSS 339 (1042)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhHHH---------HHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH---H
Q 045448 328 LESKISLAEENAGMLNE---------QTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEH---A 395 (1756)
Q Consensus 328 LEkKIs~lEe~v~slnq---------rierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeee---v 395 (1756)
+...+...+........ .....-.........+..+..+..............+..+......++.. .
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 419 (1042)
T TIGR00618 340 IEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAF 419 (1042)
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---------
Q 045448 396 KQLNSEILMGAEKLRTSEQQCVLLERANHSLQV-EAESLVQKIAIKDQELSQKQRELENLQASLQDEQSRF--------- 465 (1756)
Q Consensus 396 ~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~-Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~--------- 465 (1756)
..+..++..+...... ......+......++. .+..+...+......+.++...++.++..+.-+..+.
T Consensus 420 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~l 498 (1042)
T TIGR00618 420 RDLQGQLAHAKKQQEL-QQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLE 498 (1042)
T ss_pred HHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred -------------------------hhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHH
Q 045448 466 -------------------------AQVEVTLQTLQKLHSQSQHEQKALTLELQNKLQKMKDMEVCNHDLEEGIEQVKRE 520 (1756)
Q Consensus 466 -------------------------~q~E~al~~Le~l~sqsQeE~~~La~El~~~~~~L~~lE~~k~~l~~~~~~~~ee 520 (1756)
-..+-.|......+.+.+.....+...+......+..+......+...+..+...
T Consensus 499 ~~~~~cplcgs~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~ql~~l~~q~~~lq~ql~ql~~ql~~l~q~ 578 (1042)
T TIGR00618 499 LQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQC 578 (1042)
T ss_pred CCCCCCCCCCCCCCCChhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCCCccc
Q 045448 521 NQSLVELNSSSTITIQNLQNEIFNLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIMGLSRRYQALVEQVLSVGLNPEH 600 (1756)
Q Consensus 521 ~~~L~eln~sS~~~i~~L~~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln~~~~~l~E~~~s~~l~~~s 600 (1756)
.+.+.............+..-+..-.+....+..+..........=-. -....-.-..+......+...+...++...-
T Consensus 579 wqe~~~~l~~~~~~~~~l~~~lq~~~q~~~~l~~~~~~~l~ql~~~l~-~~e~q~~~~~~~~~~q~l~~~l~~~~~~L~~ 657 (1042)
T TIGR00618 579 DNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQD-LQDVRLHLQQCSQELALKLTALHALQLTLTQ 657 (1042)
T ss_pred HHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHhHHHHHHHHHHHhHhhhcccccchhhhHHHHHHHhhHHHHHHhh
Q 045448 601 LGSAVKELQEENSKLKEVCKEQGDEKEVLHEKLKNMDNLLKKNAALEGSLSEMNIKLEGSGERVNDLQKSCQFLREEKSS 680 (1756)
Q Consensus 601 ~~~~i~~Lq~en~kLkE~~~~~~~Ek~~l~ekl~~~e~L~~k~~~le~sls~~~~ele~lr~~vk~Lqe~~~~Lke~~s~ 680 (1756)
......-++.....+.. ..........+...+..+.........+...+..+-...+........++ ..+.+....
T Consensus 658 ~~~~~~~L~~~~~~~q~-w~~~~~~lq~lq~ql~~L~~~~~~l~q~~~ql~qae~~le~aq~~~q~l~---~~~~~~l~~ 733 (1042)
T TIGR00618 658 ERVREHALSIRVLPKEL-LASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIE---NASSSLGSD 733 (1042)
T ss_pred hhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHhhHHhh-------hhhhhhhhHHHHHHHHhHHHHHHHHHhhhhhhhhhH-----
Q 045448 681 LVAEKATLLSQLQIMTENMQKLLEKNVTLEHS-------LAGANVELEGLRAKSKSLEDFCRMLKNEKSNLLNER----- 748 (1756)
Q Consensus 681 ~~sEK~aL~~qlq~~~~~m~kLlEkns~LE~S-------LSd~n~ELe~lR~K~K~lEEscq~l~~ekS~L~~Ek----- 748 (1756)
+...-..+-..+......+...+....|.... ...-..++..++..+......+..+......+...-
T Consensus 734 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1042)
T TIGR00618 734 LAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIP 813 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q ss_pred ---HHHHhhHHHHHHHHHHHHHHHhHHhHhhhhhHHHHhHhHHHHHHHHHHHHHHHH
Q 045448 749 ---STLVSQLEDVEKRLGNLERRFTKLEEKYADIEREKESTLSQVEELRYSLTNEQL 802 (1756)
Q Consensus 749 ---~~L~SQL~~~t~~l~~Le~k~t~LE~~~s~~~~Eke~~~~qv~~L~~~L~~e~e 802 (1756)
..+-.....+...+..+......+...+..+...+.........+.........
T Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (1042)
T TIGR00618 814 SDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAK 870 (1042)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 375
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=27.71 E-value=1.5e+03 Score=29.53 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=22.9
Q ss_pred HHHHHHHHhhhcHHHHHhhHHHHHHHHHHHHHHHHHhhhhcHHHHHhHHH
Q 045448 218 RELNHAQKDAGGLDERASKADIEVKVLKEALIRLEAERDAGLLQYNHCLE 267 (1756)
Q Consensus 218 kEIse~QKel~EL~eRA~kAE~EIqsLKetLakLEsekdasllQyqq~lE 267 (1756)
.++...+.+...=.+.+...+..+.-|...+.++-..+.+.+.+|+....
T Consensus 159 ~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~ 208 (446)
T KOG4438|consen 159 KELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKK 208 (446)
T ss_pred HHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33333333333333444444445555555555554554455555554433
No 376
>PF15456 Uds1: Up-regulated During Septation
Probab=27.57 E-value=8.2e+02 Score=26.57 Aligned_cols=27 Identities=26% Similarity=0.190 Sum_probs=13.3
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 045448 419 LERANHSLQVEAESLVQKIAIKDQELS 445 (1756)
Q Consensus 419 Le~ele~Lq~Ele~l~eKIs~lerEL~ 445 (1756)
++...+++..++..+...+....++|.
T Consensus 86 ~~rk~ee~~~eL~~le~R~~~~~~rLL 112 (124)
T PF15456_consen 86 SDRKCEELAQELWKLENRLAEVRQRLL 112 (124)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455555555555555555555443
No 377
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=27.23 E-value=1.1e+03 Score=27.71 Aligned_cols=42 Identities=17% Similarity=0.172 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhhHhHH
Q 045448 470 VTLQTLQKLHSQSQHEQKALTLELQNKLQKMKDMEVCNHDLE 511 (1756)
Q Consensus 470 ~al~~Le~l~sqsQeE~~~La~El~~~~~~L~~lE~~k~~l~ 511 (1756)
.+|..+-.-|.+++.++..|..+.......-..|+..++.|.
T Consensus 156 e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~ 197 (206)
T PF14988_consen 156 EFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQ 197 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666555544444444444444443
No 378
>PRK00846 hypothetical protein; Provisional
Probab=27.05 E-value=3.4e+02 Score=27.38 Aligned_cols=42 Identities=17% Similarity=0.167 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045448 319 KQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQAL 360 (1756)
Q Consensus 319 kQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL 360 (1756)
..+..+|.+|+.+++..+..+..+|..+-+....++.|+..+
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql 50 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELI 50 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356689999999999999999999999888888888888887
No 379
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=27.01 E-value=8.6e+02 Score=28.51 Aligned_cols=81 Identities=27% Similarity=0.404 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhhHHHHhhHHHHHHHhhhHHHHhhhhhhhHHHHHHHHhhccchhhhc----hhhhhhHHHHHHHHHhhhh
Q 045448 1022 EEAYLTLQEENSKLLEEDRLLYERFLGLKKEISALEEENIVLLQEALDLGNVSTVFK----SFGIEKAEEVKALFEDLNH 1097 (1756)
Q Consensus 1022 ~~s~~~lq~e~~~~~~e~~sL~~~~~~l~e~~~~leden~~~l~E~~~~~~ls~~~~----~~~~e~~~~l~~l~~~~~~ 1097 (1756)
+..|+++.+|.++-|....-+...|+.|-.+|..|=. +..++..+..-+.-.+ +...++-.....+.+++..
T Consensus 43 ~~KY~~lR~ElI~ELkqsKklydnYYkL~~KY~~LK~----~~~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~ 118 (196)
T PF15272_consen 43 KEKYQQLRQELINELKQSKKLYDNYYKLYSKYQELKK----SSKQSEDLQSRISNLEKQLVDQMIEKDREIRTLQDELLS 118 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999877 4444443322221111 1234444555556666666
Q ss_pred hhhcchhhh
Q 045448 1098 LHMTNGELQ 1106 (1756)
Q Consensus 1098 l~~~~~~L~ 1106 (1756)
+...+.+|.
T Consensus 119 ~~~r~~el~ 127 (196)
T PF15272_consen 119 LELRNKELQ 127 (196)
T ss_pred HHHHHHHHH
Confidence 655555555
No 380
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=26.88 E-value=2.3e+02 Score=29.95 Aligned_cols=45 Identities=22% Similarity=0.373 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHH
Q 045448 342 LNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMES 386 (1756)
Q Consensus 342 lnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ 386 (1756)
+.+++..+-.++..|+..+..|.+|+.+|-+.-....++|..++.
T Consensus 13 le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 13 LEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444455555556666666666666666665666666665554
No 381
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=26.68 E-value=6.4e+02 Score=24.97 Aligned_cols=18 Identities=22% Similarity=0.015 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045448 388 IFNAQEHAKQLNSEILMG 405 (1756)
Q Consensus 388 Lseaeeev~rLn~EiE~l 405 (1756)
|.+-.+.+..|..+-+.+
T Consensus 7 l~EKDe~Ia~L~eEGekL 24 (74)
T PF12329_consen 7 LAEKDEQIAQLMEEGEKL 24 (74)
T ss_pred HHhHHHHHHHHHHHHHHH
Confidence 333333334444333333
No 382
>PRK02119 hypothetical protein; Provisional
Probab=26.52 E-value=3.2e+02 Score=26.97 Aligned_cols=38 Identities=16% Similarity=0.194 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 377 CLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQ 414 (1756)
Q Consensus 377 ~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe 414 (1756)
+-+||..||..+.+-+..+..||.-+-.-...+..++.
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ 44 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQV 44 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577888888888888888877777666655555555
No 383
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=26.44 E-value=2.7e+02 Score=36.54 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=18.9
Q ss_pred hhHHHHhhhhHhhHHhHHHHHHHHHhhhhhccc
Q 045448 1586 RKILERLASDAQKLTSLQTTVQDLKNKMEMNKS 1618 (1756)
Q Consensus 1586 ~KiLERL~SDaQkL~~Lq~svqdLk~k~e~~~k 1618 (1756)
|=+-|+--||++-+. .+-+.-|+-++.++.+
T Consensus 501 Rl~wEtYls~~~~~~--~tvlA~lR~rlqIP~r 531 (907)
T KOG2264|consen 501 RLFWETYLSDRHLLA--RTVLAALRYRLQIPTR 531 (907)
T ss_pred hhhHHHHhhHHHHHH--HHHHHHHHHhhCCCCc
Confidence 346677777777554 3455566666666654
No 384
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=26.14 E-value=3.5e+02 Score=25.86 Aligned_cols=45 Identities=11% Similarity=0.192 Sum_probs=32.8
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 418 LLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDEQ 462 (1756)
Q Consensus 418 ~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~ 462 (1756)
.|.+.++.|...+.++...++.+.-++...+.|+.+-+..|++=+
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a 51 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIA 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 344566667777777777777777777788888888888877644
No 385
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=25.79 E-value=5.2e+02 Score=30.18 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 045448 320 QCLEMIYALESKISLAEENAGM 341 (1756)
Q Consensus 320 Q~lEkIseLEkKIs~lEe~v~s 341 (1756)
.+...+.+|+.+|..++..+..
T Consensus 100 rLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 100 RLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666666666555544
No 386
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=25.67 E-value=1.1e+02 Score=29.05 Aligned_cols=45 Identities=16% Similarity=0.382 Sum_probs=37.5
Q ss_pred hhhhHHHHHHhhhhhhHhHhhhhhhHhHHHHHHHHHhhhchhhhh
Q 045448 1103 GELQGKVELLGRKLEMKEAEGLHLNETVDKLQKELHEVSDLNDQL 1147 (1756)
Q Consensus 1103 ~~L~~~v~~l~~kl~~~e~e~~~l~~~~~~~~~eL~~~~s~~~~l 1147 (1756)
++|..+|..+.-.+..++.||.++.+.++.+++-...+.++..-.
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~V 47 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEVV 47 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888999999999999999999999999776666655433
No 387
>PRK00736 hypothetical protein; Provisional
Probab=25.66 E-value=2.5e+02 Score=27.34 Aligned_cols=39 Identities=21% Similarity=0.276 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045448 322 LEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQAL 360 (1756)
Q Consensus 322 lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL 360 (1756)
.++|.+||.+++..+..+..+|.-+-+-..+++.|...+
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql 42 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKL 42 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888888888888888888877777
No 388
>PHA03011 hypothetical protein; Provisional
Probab=25.58 E-value=2.9e+02 Score=29.01 Aligned_cols=60 Identities=18% Similarity=0.285 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHHHH
Q 045448 191 TLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLDERASKADIEVKVLKEALIR 250 (1756)
Q Consensus 191 kI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~eRA~kAE~EIqsLKetLak 250 (1756)
.+.++-...+.+.++|.....+|..++.++..+---+.+-++.+.-..+++..|++.++.
T Consensus 58 D~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN 117 (120)
T PHA03011 58 DINAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIAN 117 (120)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhc
Confidence 345556667788889999999999999998887766666666666666666666665543
No 389
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=25.55 E-value=8.8e+02 Score=26.23 Aligned_cols=89 Identities=22% Similarity=0.276 Sum_probs=44.2
Q ss_pred HHHHHHhhHHhhhhhhhhhhHHHHHHHHhHHHHHHHHHhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHhHHhHhhhhhH
Q 045448 701 KLLEKNVTLEHSLAGANVELEGLRAKSKSLEDFCRMLKNEKSNLLNERSTLVSQLEDVEKRLGNLERRFTKLEEKYADIE 780 (1756)
Q Consensus 701 kLlEkns~LE~SLSd~n~ELe~lR~K~K~lEEscq~l~~ekS~L~~Ek~~L~SQL~~~t~~l~~Le~k~t~LE~~~s~~~ 780 (1756)
.|-+.|--++..|.....++...-..++.++..|..+..+-..+ ..+-+.-.-+..+...+...++.-..|-.+..+-.
T Consensus 45 ~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l-~~~~s~~~l~~~L~~~~~e~eeeSe~lae~fl~g~ 123 (150)
T PF07200_consen 45 ELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL-SSNYSPDALLARLQAAASEAEEESEELAEEFLDGE 123 (150)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHHHHHHHHHC-S-SSSH
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34667777777777777777777777777777777766655555 33322222222233344444444444444444444
Q ss_pred HHHhHhHHHH
Q 045448 781 REKESTLSQV 790 (1756)
Q Consensus 781 ~Eke~~~~qv 790 (1756)
.+.+.-+.+-
T Consensus 124 ~d~~~Fl~~f 133 (150)
T PF07200_consen 124 IDVDDFLKQF 133 (150)
T ss_dssp HHHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 4444443333
No 390
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=25.26 E-value=1.4e+03 Score=28.42 Aligned_cols=39 Identities=5% Similarity=0.130 Sum_probs=18.4
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 366 EKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILM 404 (1756)
Q Consensus 366 EKeal~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~ 404 (1756)
+-+.++.+|......++++...+..++..+......+..
T Consensus 274 qL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~e 312 (384)
T KOG0972|consen 274 QLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDE 312 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 334444455555555555555555554444443333333
No 391
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.05 E-value=1.3e+03 Score=27.84 Aligned_cols=97 Identities=11% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 045448 367 KEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQ 446 (1756)
Q Consensus 367 Keal~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~e 446 (1756)
+...+-+-.+...-...|..-+.+++.++.+.+.-++.-......+++ ++-.++.+++-++-.++.+..++++
T Consensus 46 ~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieq-------eik~~q~elEvl~~n~Q~lkeE~dd 118 (246)
T KOG4657|consen 46 LVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQ-------EIKATQSELEVLRRNLQLLKEEKDD 118 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred HHHHHHHHH---HHHHHHHHhHhhHHH
Q 045448 447 KQRELENLQ---ASLQDEQSRFAQVEV 470 (1756)
Q Consensus 447 KqeE~e~Lq---s~IqdE~~K~~q~E~ 470 (1756)
.++-+..-. +.-.+.+.|++|-++
T Consensus 119 ~keiIs~kr~~~~Ka~e~~~kRkQdsa 145 (246)
T KOG4657|consen 119 SKEIISQKRQALSKAKENAGKRKQDSA 145 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
No 392
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=25.05 E-value=1.2e+03 Score=27.54 Aligned_cols=99 Identities=23% Similarity=0.239 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhh
Q 045448 425 SLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQTLQKLHSQSQHEQKALTLELQNKLQKMKDME 504 (1756)
Q Consensus 425 ~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~~Le~l~sqsQeE~~~La~El~~~~~~L~~lE 504 (1756)
.-..||.-+.+.+..-.-++..|-.|+-.|...+.+-..++-..+.....+....+.-+.|+..+-.||+.+..+..-+.
T Consensus 7 qk~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLr 86 (202)
T PF06818_consen 7 QKSGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLR 86 (202)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhh
Confidence 34456667777777777788888888888888888888888888888888888887777777777777766655443333
Q ss_pred hhhHhHHHHHHHHHHHHHH
Q 045448 505 VCNHDLEEGIEQVKRENQS 523 (1756)
Q Consensus 505 ~~k~~l~~~~~~~~ee~~~ 523 (1756)
.....++.++..+..+...
T Consensus 87 ekl~~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 87 EKLGQLEAELAELREELAC 105 (202)
T ss_pred hhhhhhHHHHHHHHHHHHh
Confidence 3333444444444444433
No 393
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=25.00 E-value=6.1e+02 Score=30.93 Aligned_cols=83 Identities=17% Similarity=0.234 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHHHHHHHhh
Q 045448 176 EAEDKADSELETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLDERASKADIEVKVLKEALIRLEAER 255 (1756)
Q Consensus 176 ~r~~eaEeEIdeLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~eRA~kAE~EIqsLKetLakLEsek 255 (1756)
+|--++.+--..|+..|.+++++......+++........++..|..... |...+++++..|++-|
T Consensus 98 ~Rplel~e~Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~--------------ElEr~rkRle~LqsiR 163 (338)
T KOG3647|consen 98 QRPLELLEVEKVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKA--------------ELERTRKRLEALQSIR 163 (338)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhcc
Q ss_pred hhcHHHHHhHHHHHHHH
Q 045448 256 DAGLLQYNHCLERISTL 272 (1756)
Q Consensus 256 dasllQyqq~lErLS~L 272 (1756)
=+-..+|..|-++|..+
T Consensus 164 P~~MdEyE~~EeeLqkl 180 (338)
T KOG3647|consen 164 PAHMDEYEDCEEELQKL 180 (338)
T ss_pred hHHHHHHHHHHHHHHHH
No 394
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=24.56 E-value=1.1e+03 Score=27.06 Aligned_cols=15 Identities=47% Similarity=0.705 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 045448 296 EAQKLKQELSRLENE 310 (1756)
Q Consensus 296 Ele~LKqeL~~lEaE 310 (1756)
++..|+.++..+..+
T Consensus 111 ~l~~l~~~~~~l~~e 125 (188)
T PF03962_consen 111 ELEELKKELKELKKE 125 (188)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 395
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=24.53 E-value=1.3e+03 Score=30.93 Aligned_cols=137 Identities=20% Similarity=0.180 Sum_probs=81.3
Q ss_pred ccchhhhHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhhhhhHHHHHHHHhHHHHHHH
Q 045448 657 LEGSGERVNDLQKSCQFLREEKSSLVAEKATLLSQLQIMTENMQKLLEKNVTLEHSLAGANVELEGLRAKSKSLEDFCRM 736 (1756)
Q Consensus 657 le~lr~~vk~Lqe~~~~Lke~~s~~~sEK~aL~~qlq~~~~~m~kLlEkns~LE~SLSd~n~ELe~lR~K~K~lEEscq~ 736 (1756)
+=|.+-.|-.|--+|+.|.+.+..++-=|..|+.|...
T Consensus 296 llGMGrEVeNLilENsqLLetKNALNiVKNDLIakVDe------------------------------------------ 333 (832)
T KOG2077|consen 296 LLGMGREVENLILENSQLLETKNALNIVKNDLIAKVDE------------------------------------------ 333 (832)
T ss_pred hhcchHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHh------------------------------------------
Confidence 33566667777777777777777777666666655522
Q ss_pred HHhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHhHHhHhhhhhHHHHhHhHHHHHHHHHH--HHHHHH-HHHhhhhhhHH
Q 045448 737 LKNEKSNLLNERSTLVSQLEDVEKRLGNLERRFTKLEEKYADIEREKESTLSQVEELRYS--LTNEQL-ERANYVQSSES 813 (1756)
Q Consensus 737 l~~ekS~L~~Ek~~L~SQL~~~t~~l~~Le~k~t~LE~~~s~~~~Eke~~~~qv~~L~~~--L~~e~e-~~~~~~~s~e~ 813 (1756)
|..|+..|--.|+.+.+.-.+|++++++||.-+--++.|..-++.+-.+=-+. =.+.|. =.-..+.-+=+
T Consensus 334 -------L~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiPmAqRkRFTRvEMaRVLM 406 (832)
T KOG2077|consen 334 -------LTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDIPMAQRKRFTRVEMARVLM 406 (832)
T ss_pred -------hccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhhHHHHHHHHHH
Confidence 22333333344556667778899999999999999999988887664322110 001111 11122333344
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 814 RMVDLESLVHQLQEETTLRKKEFEEELDK 842 (1756)
Q Consensus 814 ~l~~le~~i~~Lqee~~~~~~e~e~e~~k 842 (1756)
.-+.|..+.-.|||-.++-+-..-...+.
T Consensus 407 eRNqYKErLMELqEavrWTEMiRAsre~p 435 (832)
T KOG2077|consen 407 ERNQYKERLMELQEAVRWTEMIRASRENP 435 (832)
T ss_pred HHhHHHHHHHHHHHHHhHHHHHHHhhcCc
Confidence 45667777777777777655444444444
No 396
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.52 E-value=1.8e+03 Score=29.59 Aligned_cols=18 Identities=33% Similarity=0.294 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 045448 237 ADIEVKVLKEALIRLEAE 254 (1756)
Q Consensus 237 AE~EIqsLKetLakLEse 254 (1756)
++.++..+.+.-.+|...
T Consensus 607 ~~eer~~i~e~a~~La~R 624 (741)
T KOG4460|consen 607 CREERKSLREMAERLADR 624 (741)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444333
No 397
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=24.36 E-value=9e+02 Score=25.94 Aligned_cols=86 Identities=22% Similarity=0.350 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH------
Q 045448 321 CLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEH------ 394 (1756)
Q Consensus 321 ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeee------ 394 (1756)
|..++..++.+|..+...=.. .++..|+.-|..++.+
T Consensus 22 C~~K~~~Ie~qI~~Ak~~gN~-------------------------------------~rv~GLe~AL~~v~~~Ctd~~l 64 (115)
T PF06476_consen 22 CEAKEQAIEKQIEYAKAHGNQ-------------------------------------HRVAGLEKALEEVKAHCTDEGL 64 (115)
T ss_pred HHHHHHHHHHHHHHHHHcCCH-------------------------------------HHHHHHHHHHHHHHhhcCCchh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 395 AKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELE 452 (1756)
Q Consensus 395 v~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e 452 (1756)
......+|.....++...+. ++...+..=.. .||....++|.+.+.|+.
T Consensus 65 ~~e~q~ki~~~~~kV~ere~-------eL~eA~~~G~~--~KI~K~~~KL~ea~~eL~ 113 (115)
T PF06476_consen 65 KAERQQKIAEKQQKVAEREA-------ELKEAQAKGDS--DKIAKRQKKLAEAKAELK 113 (115)
T ss_pred hHHHHHHHHHHHHHHHHHHH-------HHHHHHHhCCH--HHHHHHHHHHHHHHHHHh
No 398
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=24.31 E-value=7e+02 Score=30.74 Aligned_cols=91 Identities=22% Similarity=0.281 Sum_probs=59.5
Q ss_pred HHHhhhhHHHHHHHHHHHHhHHHHHHHHHH----HhhHHhhhhhhhhhhHHHHHHHHhHHHHHHHHHhhhhhhhhhHHHH
Q 045448 676 EEKSSLVAEKATLLSQLQIMTENMQKLLEK----NVTLEHSLAGANVELEGLRAKSKSLEDFCRMLKNEKSNLLNERSTL 751 (1756)
Q Consensus 676 e~~s~~~sEK~aL~~qlq~~~~~m~kLlEk----ns~LE~SLSd~n~ELe~lR~K~K~lEEscq~l~~ekS~L~~Ek~~L 751 (1756)
.+...+..+.+.+..++|.+..+.-+.+-. ...+-.++.+++..++.++..+-.|.+.|+.+.........+|...
T Consensus 14 ~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~~~r~~~ 93 (338)
T PF04124_consen 14 SEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKISEERKKA 93 (338)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555544444333 2345566777888899999999999999999998888888887776
Q ss_pred HhhHHHHHHHHHHHHH
Q 045448 752 VSQLEDVEKRLGNLER 767 (1756)
Q Consensus 752 ~SQL~~~t~~l~~Le~ 767 (1756)
.+-+..... +.++.+
T Consensus 94 ~~~l~~~~~-l~diLE 108 (338)
T PF04124_consen 94 SLLLENHDR-LLDILE 108 (338)
T ss_pred HHHHHHHHH-HHHHHh
Confidence 666555544 333333
No 399
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=23.93 E-value=6.2e+02 Score=30.39 Aligned_cols=55 Identities=24% Similarity=0.337 Sum_probs=42.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHH
Q 045448 529 SSSTITIQNLQNEIFNLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIMGLSRRYQ 585 (1756)
Q Consensus 529 ~sS~~~i~~L~~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln~~~~ 585 (1756)
.+|.+.|-.-|. +-++.-+..||.|+...-.....|+.|+..++.++-.|=++-+
T Consensus 77 ~~siLpIVtsQR--DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 77 DSSILPIVTSQR--DRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred cccHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344454444443 5677888999999999999999999999999999998877533
No 400
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=23.88 E-value=7.7e+02 Score=24.95 Aligned_cols=67 Identities=18% Similarity=0.243 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045448 291 SKAEIEAQKLKQELSRLENEKEAGLLQYKQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQAL 360 (1756)
Q Consensus 291 ~kAE~Ele~LKqeL~~lEaEkEa~llQykQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL 360 (1756)
.....|+..+...+..+....+..-.++.+....+..+.++|..++..-..+.+.. +.||..|+.+|
T Consensus 7 d~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~Y---EeEI~rLr~eL 73 (79)
T PF08581_consen 7 DAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQY---EEEIARLRREL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 33444555555544444433333333344444444455555555555544444443 55666666665
No 401
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=23.54 E-value=1e+03 Score=26.15 Aligned_cols=38 Identities=13% Similarity=0.153 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 377 CLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQ 414 (1756)
Q Consensus 377 ~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe 414 (1756)
|.+....+.+++..+..++.++..++.....-+..++.
T Consensus 80 ~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ 117 (126)
T PF07889_consen 80 QKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEG 117 (126)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444555555554444444444444443333
No 402
>smart00338 BRLZ basic region leucin zipper.
Probab=23.27 E-value=73 Score=29.95 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=28.2
Q ss_pred hhhhHHHHHHHhhhhhhhhhhhhhhcccchhHHHhhhh
Q 045448 1308 KSLESKQMKERIGSLESEIGRLKSRLSSYDPVIASLKD 1345 (1756)
Q Consensus 1308 k~~~i~~lkerv~~lE~En~~Lk~~Lsay~p~i~sL~~ 1345 (1756)
|..|+..|..+|..|+.+|..|..+++..-.-+..|.+
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 24 KKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688888889999999998888887665555555544
No 403
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=23.24 E-value=9.9e+02 Score=26.02 Aligned_cols=39 Identities=28% Similarity=0.365 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 422 ANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQD 460 (1756)
Q Consensus 422 ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~Iqd 460 (1756)
-...|...++.+.-+|..+++.-...+.+++.|++.|..
T Consensus 71 ~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 71 AVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555666666666666554
No 404
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=22.95 E-value=1.5e+03 Score=27.98 Aligned_cols=60 Identities=18% Similarity=0.161 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHH--HHHhhHHHHHHHHHHHHHHHHHh
Q 045448 195 IEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLD--ERASKADIEVKVLKEALIRLEAE 254 (1756)
Q Consensus 195 LQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~--eRA~kAE~EIqsLKetLakLEse 254 (1756)
...-..|++.++.+.+.++...+..+...+..-.-++ ..+.....-+..|+..++.++.+
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~ 229 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQ 229 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455679999999999999999999999888765443 22333333444444444444443
No 405
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=22.85 E-value=4.8e+02 Score=29.04 Aligned_cols=74 Identities=24% Similarity=0.408 Sum_probs=54.8
Q ss_pred HHHHHHhHHHHHHHHHHHhhHHhhhhhhhhhhHHHHHHHHhHHHHHHHHHhhhhhhhh------hHHHHHhhHHHHHHHH
Q 045448 689 LSQLQIMTENMQKLLEKNVTLEHSLAGANVELEGLRAKSKSLEDFCRMLKNEKSNLLN------ERSTLVSQLEDVEKRL 762 (1756)
Q Consensus 689 ~~qlq~~~~~m~kLlEkns~LE~SLSd~n~ELe~lR~K~K~lEEscq~l~~ekS~L~~------Ek~~L~SQL~~~t~~l 762 (1756)
..+|+.....++.++....-....|.++......+-.+...|-+.|..|..+...|.. ++=.-|.+|+.++..|
T Consensus 6 ~~~L~~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~L 85 (157)
T PF04136_consen 6 LDYLQQYREECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPITRRL 85 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHH
Confidence 3566667778888888888888889999999999999999999999998877765532 2333344555555444
No 406
>PRK09343 prefoldin subunit beta; Provisional
Probab=22.63 E-value=8.9e+02 Score=25.90 Aligned_cols=102 Identities=25% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhHHhhhhh---hhhhhHHHHHHHHhHHHHHHHHHhhhhhhhhhHHHHHhhHHHHHHHH
Q 045448 686 ATLLSQLQIMTENMQKLLEKNVTLEHSLAG---ANVELEGLRAKSKSLEDFCRMLKNEKSNLLNERSTLVSQLEDVEKRL 762 (1756)
Q Consensus 686 ~aL~~qlq~~~~~m~kLlEkns~LE~SLSd---~n~ELe~lR~K~K~lEEscq~l~~ekS~L~~Ek~~L~SQL~~~t~~l 762 (1756)
..++.++|.+...+..+...-..|+..+.. +..||+.+-.-.+...-.-.+|--. ....=+.+|=-.++.+...+
T Consensus 10 q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~q--d~~e~~~~l~~r~E~ie~~i 87 (121)
T PRK09343 10 QAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKV--DKTKVEKELKERKELLELRS 87 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhc--cHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHhHhhhhhHHHHhHhHHH
Q 045448 763 GNLERRFTKLEEKYADIEREKESTLSQ 789 (1756)
Q Consensus 763 ~~Le~k~t~LE~~~s~~~~Eke~~~~q 789 (1756)
+.|+++-..|+.++..+...+..++.+
T Consensus 88 k~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 88 RTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
No 407
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=22.44 E-value=8.5e+02 Score=28.51 Aligned_cols=22 Identities=14% Similarity=0.342 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh
Q 045448 345 QTEKAETEVKALKQALTGLNEE 366 (1756)
Q Consensus 345 rierle~Ei~~LkqEL~~LeeE 366 (1756)
+.-|++.|...|...|.+.+..
T Consensus 97 EevrLkrELa~Le~~l~~~~~~ 118 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQA 118 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666666666555543
No 408
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=22.36 E-value=1.3e+03 Score=27.15 Aligned_cols=47 Identities=19% Similarity=0.209 Sum_probs=25.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHhhH
Q 045448 422 ANHSLQVEAESLVQKIAIKDQELSQ-KQRELENLQASLQDEQSRFAQV 468 (1756)
Q Consensus 422 ele~Lq~Ele~l~eKIs~lerEL~e-KqeE~e~Lqs~IqdE~~K~~q~ 468 (1756)
.+..+..+++.+......-+..+.. ...|+..++.-|..|..-+..+
T Consensus 176 ~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~e~~~R~~~ 223 (247)
T PF06705_consen 176 KLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALALESQEREQS 223 (247)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555555555544444444444 5556666666666665555544
No 409
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=22.31 E-value=2.7e+02 Score=32.88 Aligned_cols=88 Identities=26% Similarity=0.331 Sum_probs=62.3
Q ss_pred HHHHHHHHhHhhhcccccchhhhHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhhhhh
Q 045448 641 KKNAALEGSLSEMNIKLEGSGERVNDLQKSCQFLREEKSSLVAEKATLLSQLQIMTENMQKLLEKNVTLEHSLAGANVEL 720 (1756)
Q Consensus 641 ~k~~~le~sls~~~~ele~lr~~vk~Lqe~~~~Lke~~s~~~sEK~aL~~qlq~~~~~m~kLlEkns~LE~SLSd~n~EL 720 (1756)
.++......|..+| .+....-+..|.-+.--.+...+..+..+.+.|..-+... .+++.++ -+|+.|+++..++
T Consensus 105 ~~~~~~l~~l~~~g-~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka-~~~~d~l----~ie~~L~~v~~eI 178 (262)
T PF14257_consen 105 DKFDSFLDELSELG-KVTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKA-KTVEDLL----EIERELSRVRSEI 178 (262)
T ss_pred HHHHHHHHHHhccC-ceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHH----HHHHHHHHHHHHH
Confidence 44555666666666 6666666666666666666666666666677776666533 4566655 4899999999999
Q ss_pred HHHHHHHHhHHHHH
Q 045448 721 EGLRAKSKSLEDFC 734 (1756)
Q Consensus 721 e~lR~K~K~lEEsc 734 (1756)
|.++...+.|.+.-
T Consensus 179 e~~~~~~~~l~~~v 192 (262)
T PF14257_consen 179 EQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
No 410
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=22.07 E-value=1.2e+03 Score=26.47 Aligned_cols=82 Identities=23% Similarity=0.308 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 345 QTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQME--------SEIFNAQEHAKQLNSEILMGAEKLRTSEQQC 416 (1756)
Q Consensus 345 rierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE--------~ELseaeeev~rLn~EiE~l~~kle~lEe~~ 416 (1756)
+.+++..|...++.++...-.+=|.+-..+.++..+|..+. ..+..|=+.+..+.-++.....+.+.+...-
T Consensus 28 E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rR 107 (159)
T PF05384_consen 28 EYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRERR 107 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555666666666666665554 3444455555555555555555555555544
Q ss_pred hHHHHhhhHH
Q 045448 417 VLLERANHSL 426 (1756)
Q Consensus 417 ~~Le~ele~L 426 (1756)
..||..+..+
T Consensus 108 D~LErrl~~l 117 (159)
T PF05384_consen 108 DELERRLRNL 117 (159)
T ss_pred HHHHHHHHHH
Confidence 4444333333
No 411
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.00 E-value=6.1e+02 Score=28.63 Aligned_cols=71 Identities=17% Similarity=0.281 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 376 QCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELE 452 (1756)
Q Consensus 376 q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e 452 (1756)
=|..++-.+-.++...++.++....+........+... .........+++.+..+|...+.+++..+...+
T Consensus 115 l~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~------~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~ 185 (192)
T PF05529_consen 115 LVIRRVHSLIKELIKLEEKLEALKKQAESASEAAEKLL------KEENKKLSEEIEKLKKELEKKEKEIEALKKQSE 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh------hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666666655554433333221 123334444444444444444444444333333
No 412
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=21.89 E-value=60 Score=30.97 Aligned_cols=29 Identities=34% Similarity=0.556 Sum_probs=24.9
Q ss_pred hhhHHHHHHHhhhhhhhhhhhhhhcccch
Q 045448 1309 SLESKQMKERIGSLESEIGRLKSRLSSYD 1337 (1756)
Q Consensus 1309 ~~~i~~lkerv~~lE~En~~Lk~~Lsay~ 1337 (1756)
..-|++|.+||..|+.||.|+++.+.+-.
T Consensus 20 ~lSv~EL~~RIa~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 20 LLSVEELEERIALLEAEIARLEAAIAKKS 48 (59)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999999887644
No 413
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=21.87 E-value=3.4e+02 Score=28.68 Aligned_cols=42 Identities=24% Similarity=0.237 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHH
Q 045448 401 EILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQ 442 (1756)
Q Consensus 401 EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~ler 442 (1756)
.+..+..++..++..+..|.++|..|+.|-+.+++.|.....
T Consensus 16 ~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 16 QLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444444555555555888888888888888887765
No 414
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=21.81 E-value=1.1e+03 Score=27.19 Aligned_cols=26 Identities=12% Similarity=0.224 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 183 SELETLKKTLAEIEAEKEAILMQYQQ 208 (1756)
Q Consensus 183 eEIdeLQkkI~aLQTEKE~LesQyEe 208 (1756)
.....++..+..++.+++.+...+..
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~ 87 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEE 87 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666665555444433
No 415
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=21.53 E-value=1.2e+03 Score=26.49 Aligned_cols=172 Identities=16% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhhhHHHH---HHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHH
Q 045448 262 YNHCLERISTLEKMIIQAQEDSKGLNER---ASKAEIEAQKLKQELSRLENE--KEAGLLQYKQCLEMIYALESKISLAE 336 (1756)
Q Consensus 262 yqq~lErLS~LE~~Ls~AQeelk~L~ER---a~kAE~Ele~LKqeL~~lEaE--kEa~llQykQ~lEkIseLEkKIs~lE 336 (1756)
+......+..|+..+..+..-...+..+ +..+-.++...-..++..+.. ...++.++..+.+++.++....+..+
T Consensus 26 F~~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~E~~~~l~~~l~~l~~~~~~~~~~~~~~a~~~ 105 (236)
T PF09325_consen 26 FEEIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKSEEEKSLSEALSQLAEAFEKISELLEEQANQE 105 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 337 ENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQC 416 (1756)
Q Consensus 337 e~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~ 416 (1756)
...-. ..+-.|-.+..-+..+=..-..+.-........+......+..+..
T Consensus 106 ~~~l~---------------------------~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~-- 156 (236)
T PF09325_consen 106 EETLG---------------------------EPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKA-- 156 (236)
T ss_pred HHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 045448 417 VLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDEQSRFAQ 467 (1756)
Q Consensus 417 ~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q 467 (1756)
....-...++.+...|....+....++.+++.....+..|..+|..
T Consensus 157 -----~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~ 202 (236)
T PF09325_consen 157 -----SGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEK 202 (236)
T ss_pred -----cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 416
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=21.51 E-value=2.3e+03 Score=29.75 Aligned_cols=41 Identities=10% Similarity=0.260 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHh-------hhhhhHHHHHHhhHHHHHHHHH
Q 045448 343 NEQTEKAETEVKALKQALT-------GLNEEKEAIAFRYDQCLDKIAQ 383 (1756)
Q Consensus 343 nqrierle~Ei~~LkqEL~-------~LeeEKeal~l~y~q~lekIse 383 (1756)
+..++.+..+++.|-+.|. .++.+-+.++-.|+.|..++..
T Consensus 867 ~~~~~~~~~~id~lv~~IK~~~~tq~~~~~~~d~~~~~~e~~~~~l~s 914 (1259)
T KOG0163|consen 867 ISGANSTYRQIDDLVKKIKMPRITQREMNSEYDVAVKNYEKLVKRLDS 914 (1259)
T ss_pred HhhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3345555555666655543 4667778888888888887776
No 417
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=21.49 E-value=1.2e+02 Score=34.36 Aligned_cols=44 Identities=27% Similarity=0.260 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 404 MGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQREL 451 (1756)
Q Consensus 404 ~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~ 451 (1756)
+++.+++.+-++-+.||.++ .|.+.|+..++.+..|+.+.+.|+
T Consensus 4 D~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 4 DFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555 345555556666666666655555
No 418
>TIGR02301 conserved hypothetical protein TIGR02301. Members of this uncharacterized protein family are found in a number of alphaProteobacteria, including root nodule bacteria, Brucella suis, Caulobacter crescentus, and Rhodopseudomonas palustris. Conserved residues include two well-separated cysteines, suggesting a disulfide bond. The function is unknown.
Probab=21.43 E-value=1.3e+02 Score=32.40 Aligned_cols=47 Identities=30% Similarity=0.502 Sum_probs=37.6
Q ss_pred HHHHHHHhhchhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhcc
Q 045448 6 KAMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDNATGELRQAHR 63 (1756)
Q Consensus 6 k~~l~li~ed~dsfa~~aemyy~~Rp~li~~vee~~r~yr~Laeryd~~~~el~~~~~ 63 (1756)
..|..||+-++-|=+.|+ .|++-|+|.||+.+..|-+-|..-+.+..
T Consensus 58 ~~M~~Ll~aE~p~~~rR~-----------rl~~aFNrGYr~~~~~Y~~Ct~aA~~A~~ 104 (121)
T TIGR02301 58 SRMQALIDAETADEERRA-----------RMTAAFNRGYRSFASTYTRCTPAATKAEE 104 (121)
T ss_pred HHHHHHHHhhCCChhHHH-----------HHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 568888988777767777 36899999999999999988877665543
No 419
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=21.39 E-value=3.1e+02 Score=26.89 Aligned_cols=52 Identities=19% Similarity=0.295 Sum_probs=37.3
Q ss_pred chhhhHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHhhHH
Q 045448 659 GSGERVNDLQKSCQFLREEKSSLVAEKATLLSQLQIMTENMQKLLEKNVTLE 710 (1756)
Q Consensus 659 ~lr~~vk~Lqe~~~~Lke~~s~~~sEK~aL~~qlq~~~~~m~kLlEkns~LE 710 (1756)
-|=.....|..+|..|+.......+|++.|+++.+.....++.++..---||
T Consensus 11 ~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 11 HLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 4444456677888888888888888888888888777777777666544443
No 420
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=21.13 E-value=5.1e+02 Score=28.50 Aligned_cols=45 Identities=22% Similarity=0.307 Sum_probs=31.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 370 IAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQ 414 (1756)
Q Consensus 370 l~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe 414 (1756)
...+|.+++.....+|..+.-....+.-|..++...+..++.-.+
T Consensus 18 ~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~ 62 (160)
T PF13094_consen 18 DSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYE 62 (160)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888777777777777776666555555444
No 421
>PF09539 DUF2385: Protein of unknown function (DUF2385); InterPro: IPR012645 Members of this uncharacterised protein family are found in a number of alphaproteobacteria, including root nodule bacteria, Brucella suis, Caulobacter crescentus (Caulobacter vibrioides), and Rhodopseudomonas palustris. Conserved residues include two well-separated cysteines, suggesting a disulphide bond. The function is unknown.
Probab=20.68 E-value=1.3e+02 Score=31.25 Aligned_cols=46 Identities=37% Similarity=0.586 Sum_probs=36.6
Q ss_pred HHHHHHHhhchhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhc
Q 045448 6 KAMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDNATGELRQAH 62 (1756)
Q Consensus 6 k~~l~li~ed~dsfa~~aemyy~~Rp~li~~vee~~r~yr~Laeryd~~~~el~~~~ 62 (1756)
..|-.||+-++-+=+.|+ .+|+-|++.||+.+..|-.-|..-+.|.
T Consensus 33 ~~M~~Ll~~E~p~~~rR~-----------rl~~aFN~GYr~~~~~Y~~Ct~~A~~A~ 78 (96)
T PF09539_consen 33 DRMQALLDAEAPDEARRA-----------RLIAAFNRGYRAFSSVYRTCTPAAREAE 78 (96)
T ss_pred HHHHHHHHhcCCCHHHHH-----------HHHHHHHHHHHHHhHhhccCCHHHHHHH
Confidence 468888888666657777 4789999999999999998877655544
No 422
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=20.39 E-value=6.9e+02 Score=28.42 Aligned_cols=52 Identities=29% Similarity=0.455 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 045448 536 QNLQNEIFNLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIMGLSRRYQALVEQVLSV 594 (1756)
Q Consensus 536 ~~L~~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln~~~~~l~E~~~s~ 594 (1756)
+.+..|...++..+..|.. +...|+.++..+..+...+.+.|++|+..|.-.
T Consensus 100 ~~~~~e~~~l~~e~~~l~~-------~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RA 151 (161)
T TIGR02894 100 QALQKENERLKNQNESLQK-------RNEELEKELEKLRQRLSTIEEDYQTLIDIMDRA 151 (161)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443 555666677777777777888888888777544
No 423
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.32 E-value=1.5e+03 Score=26.84 Aligned_cols=125 Identities=16% Similarity=0.263 Sum_probs=77.2
Q ss_pred HHhhCCCccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHhHHHHH--HHHHHHhHhhhcccccchh---hhHH
Q 045448 591 VLSVGLNPEHLGSAVKELQEENSKLKEVCKEQGDEKEVLHEKLKNMDNLLKK--NAALEGSLSEMNIKLEGSG---ERVN 665 (1756)
Q Consensus 591 ~~s~~l~~~s~~~~i~~Lq~en~kLkE~~~~~~~Ek~~l~ekl~~~e~L~~k--~~~le~sls~~~~ele~lr---~~vk 665 (1756)
+.+++-...|...-|++|--++.+++.-+++-+.--..=.-|-+-|.-|..| |.....+|-.-.++|+-.. +++|
T Consensus 21 i~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~e~LK 100 (218)
T KOG1655|consen 21 IDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTAESLK 100 (218)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3334444445555667777777777777766653222222233444455444 7888888888788877543 3445
Q ss_pred HHHHHhhHHHHHHhhhhHH-HHHHHHHHHHhHHHHHHHHHHHhhHHhhhhh
Q 045448 666 DLQKSCQFLREEKSSLVAE-KATLLSQLQIMTENMQKLLEKNVTLEHSLAG 715 (1756)
Q Consensus 666 ~Lqe~~~~Lke~~s~~~sE-K~aL~~qlq~~~~~m~kLlEkns~LE~SLSd 715 (1756)
+-+-.-..+|.....+..+ |.+=+.+++-+...|..+++-..=+.-.|+.
T Consensus 101 dtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr 151 (218)
T KOG1655|consen 101 DTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGR 151 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555555556555555555 5556788888888899998888777666654
No 424
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=20.17 E-value=7.3e+02 Score=28.57 Aligned_cols=67 Identities=24% Similarity=0.364 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 323 EMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSE 401 (1756)
Q Consensus 323 EkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~E 401 (1756)
+....|--+|..++..++++.+...-.+.|+..|..-| --.++-+.|.+|..++....+.+..++.-
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~L------------t~eemQe~i~~L~kev~~~~erl~~~k~g 145 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSAL------------TTEEMQEEIQELKKEVAGYRERLKNIKAG 145 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556666777777777777777777777777766 12234555566666666655555555543
No 425
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=20.17 E-value=1e+03 Score=24.88 Aligned_cols=16 Identities=13% Similarity=0.173 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 045448 318 YKQCLEMIYALESKIS 333 (1756)
Q Consensus 318 ykQ~lEkIseLEkKIs 333 (1756)
|++..+.+..+..++.
T Consensus 12 ~q~~q~~~~~l~~q~~ 27 (110)
T TIGR02338 12 LQQLQQQLQAVATQKQ 27 (110)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
Done!