Query 045448
Match_columns 1756
No_of_seqs 187 out of 200
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 23:42:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045448.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045448hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 99.2 7.3E-07 2.5E-11 96.2 43.2 46 187-232 3-48 (284)
2 1c1g_A Tropomyosin; contractIl 99.2 9.4E-07 3.2E-11 95.4 43.7 110 181-297 11-120 (284)
3 1i84_S Smooth muscle myosin he 98.8 8.8E-09 3E-13 137.2 11.8 102 420-528 1066-1167(1184)
4 1i84_S Smooth muscle myosin he 98.7 1.5E-08 5.3E-13 134.9 10.3 33 534-574 1145-1177(1184)
5 3na7_A HP0958; flagellar bioge 97.0 0.064 2.2E-06 60.6 22.1 10 422-431 140-149 (256)
6 2v71_A Nuclear distribution pr 96.8 0.11 3.7E-06 56.8 20.9 108 272-389 47-154 (189)
7 2v71_A Nuclear distribution pr 96.7 0.17 5.8E-06 55.3 21.9 68 383-454 113-180 (189)
8 3na7_A HP0958; flagellar bioge 96.7 0.1 3.5E-06 59.0 21.2 77 380-461 54-130 (256)
9 2efr_A General control protein 96.6 0.67 2.3E-05 49.4 24.5 113 322-455 41-153 (155)
10 3o0z_A RHO-associated protein 96.2 0.58 2E-05 50.3 21.8 128 176-310 6-133 (168)
11 2efr_A General control protein 96.2 1.3 4.6E-05 47.1 24.3 127 216-349 26-152 (155)
12 3vkg_A Dynein heavy chain, cyt 96.1 0.94 3.2E-05 66.4 29.9 59 184-242 1900-1958(3245)
13 3o0z_A RHO-associated protein 96.0 0.81 2.8E-05 49.2 21.4 89 285-373 52-140 (168)
14 3vkg_A Dynein heavy chain, cyt 95.2 1.6 5.3E-05 64.2 26.5 92 273-364 2013-2104(3245)
15 2dfs_A Myosin-5A; myosin-V, in 94.2 6.6 0.00023 52.8 27.2 12 62-73 586-597 (1080)
16 2dfs_A Myosin-5A; myosin-V, in 93.9 0.68 2.3E-05 62.1 17.0 11 483-493 983-993 (1080)
17 3oja_B Anopheles plasmodium-re 93.5 0.93 3.2E-05 55.9 16.3 77 321-397 454-534 (597)
18 3u1c_A Tropomyosin alpha-1 cha 93.0 3.3 0.00011 41.1 16.1 93 298-404 5-97 (101)
19 2ocy_A RAB guanine nucleotide 91.0 8.2 0.00028 41.1 17.1 124 701-835 10-144 (154)
20 3u1c_A Tropomyosin alpha-1 cha 90.4 5.4 0.00018 39.6 14.3 51 355-405 6-56 (101)
21 3u59_A Tropomyosin beta chain; 89.9 6.8 0.00023 38.7 14.6 47 355-401 6-52 (101)
22 3u59_A Tropomyosin beta chain; 89.9 7.5 0.00026 38.4 14.9 92 298-403 5-96 (101)
23 3oja_B Anopheles plasmodium-re 89.6 2.6 8.9E-05 52.0 14.1 33 327-359 453-485 (597)
24 2b9c_A Striated-muscle alpha t 86.8 15 0.00051 38.8 15.6 101 248-348 5-105 (147)
25 2v66_B Nuclear distribution pr 86.5 24 0.00081 35.9 16.0 100 339-448 5-104 (111)
26 2b9c_A Striated-muscle alpha t 84.8 15 0.00051 38.8 14.4 131 216-360 8-138 (147)
27 4gkw_A Spindle assembly abnorm 83.1 47 0.0016 34.5 22.6 140 294-439 17-158 (167)
28 2ocy_A RAB guanine nucleotide 82.0 43 0.0015 35.8 16.4 91 376-491 10-104 (154)
29 2jee_A YIIU; FTSZ, septum, coi 80.5 16 0.00055 35.3 11.3 69 378-453 5-73 (81)
30 4h22_A Leucine-rich repeat fli 79.2 6.3 0.00021 39.5 8.4 73 727-799 4-76 (103)
31 2e7s_A RAB guanine nucleotide 79.1 4.4 0.00015 42.3 7.7 118 707-835 4-132 (135)
32 3hnw_A Uncharacterized protein 78.3 8.8 0.0003 40.1 9.8 70 489-558 66-135 (138)
33 1ic2_A Tropomyosin alpha chain 78.1 7.9 0.00027 36.8 8.6 29 359-387 7-35 (81)
34 2eqb_B RAB guanine nucleotide 76.8 16 0.00055 36.3 10.5 65 427-491 4-72 (97)
35 2jee_A YIIU; FTSZ, septum, coi 76.5 13 0.00045 35.8 9.5 60 532-591 19-78 (81)
36 3ol1_A Vimentin; structural ge 74.7 71 0.0024 32.4 15.0 32 179-210 16-47 (119)
37 3bas_A Myosin heavy chain, str 74.2 16 0.00055 35.4 9.7 68 716-783 19-86 (89)
38 3cvf_A Homer-3, homer protein 73.8 3.6 0.00012 39.5 4.9 74 1103-1176 2-75 (79)
39 3ol1_A Vimentin; structural ge 73.7 45 0.0015 33.9 13.3 74 181-254 32-105 (119)
40 3hnw_A Uncharacterized protein 73.2 25 0.00084 36.8 11.5 57 380-443 76-132 (138)
41 3tnu_A Keratin, type I cytoske 72.9 31 0.0011 35.4 12.1 99 759-857 30-128 (131)
42 4gkw_A Spindle assembly abnorm 72.7 95 0.0032 32.3 16.9 50 602-651 45-94 (167)
43 1ic2_A Tropomyosin alpha chain 72.6 30 0.001 32.9 10.9 73 432-504 3-75 (81)
44 3tnu_B Keratin, type II cytosk 72.5 37 0.0013 34.7 12.5 97 760-856 29-125 (129)
45 3qh9_A Liprin-beta-2; coiled-c 72.3 22 0.00077 34.2 9.8 59 400-458 19-77 (81)
46 3a7p_A Autophagy protein 16; c 71.5 15 0.00052 39.0 9.4 67 710-776 67-133 (152)
47 3a7p_A Autophagy protein 16; c 71.4 28 0.00097 37.0 11.4 78 739-829 49-126 (152)
48 2v66_B Nuclear distribution pr 69.8 1E+02 0.0034 31.4 15.5 59 345-403 43-101 (111)
49 3mq7_A Bone marrow stromal ant 69.8 1E+02 0.0035 31.5 14.9 88 263-360 21-108 (121)
50 3tnu_B Keratin, type II cytosk 68.9 56 0.0019 33.4 12.9 13 382-394 85-97 (129)
51 3swk_A Vimentin; cytoskeleton, 65.1 61 0.0021 31.3 11.5 82 423-525 2-83 (86)
52 3bas_A Myosin heavy chain, str 64.7 21 0.00071 34.6 8.2 49 673-721 39-87 (89)
53 3ghg_A Fibrinogen alpha chain; 64.5 42 0.0014 41.7 12.5 45 327-371 114-158 (562)
54 2e7s_A RAB guanine nucleotide 61.1 40 0.0014 35.3 10.0 123 770-910 4-130 (135)
55 3swk_A Vimentin; cytoskeleton, 61.1 74 0.0025 30.7 11.2 73 180-252 11-83 (86)
56 3oja_A Leucine-rich immune mol 59.7 2.2E+02 0.0074 34.4 17.8 45 184-228 354-398 (487)
57 3cve_A Homer protein homolog 1 58.6 33 0.0011 32.5 8.0 62 1167-1231 4-65 (72)
58 2v4h_A NF-kappa-B essential mo 57.6 1.2E+02 0.0041 30.9 12.2 17 325-341 26-42 (110)
59 3cve_A Homer protein homolog 1 56.4 22 0.00075 33.7 6.4 64 1111-1174 4-67 (72)
60 1x79_B RAB GTPase binding effe 55.8 67 0.0023 32.7 10.3 70 513-585 39-108 (112)
61 3oja_A Leucine-rich immune mol 55.2 2.5E+02 0.0085 33.8 17.3 61 380-447 415-475 (487)
62 3s4r_A Vimentin; alpha-helix, 55.1 34 0.0012 33.5 7.9 33 650-682 11-43 (93)
63 3mq9_A Bone marrow stromal ant 53.4 1.5E+02 0.0053 35.5 15.1 40 265-304 395-434 (471)
64 2w83_C C-JUN-amino-terminal ki 53.4 28 0.00094 33.3 6.6 73 596-671 2-74 (77)
65 3q8t_A Beclin-1; autophagy, AT 52.7 1.8E+02 0.0061 28.6 14.4 66 422-487 26-91 (96)
66 3ghg_A Fibrinogen alpha chain; 51.0 1.7E+02 0.0058 36.6 14.5 46 537-582 106-152 (562)
67 1gk4_A Vimentin; intermediate 50.6 1.5E+02 0.005 28.4 11.4 77 782-858 2-78 (84)
68 1l8d_A DNA double-strand break 50.5 1.9E+02 0.0065 28.3 13.1 36 424-459 67-102 (112)
69 3i00_A HIP-I, huntingtin-inter 50.3 73 0.0025 32.7 9.7 62 297-361 17-78 (120)
70 4h22_A Leucine-rich repeat fli 49.1 1.1E+02 0.0038 30.7 10.4 78 380-457 3-80 (103)
71 3s4r_A Vimentin; alpha-helix, 48.8 96 0.0033 30.4 9.9 73 692-764 11-88 (93)
72 3cvf_A Homer-3, homer protein 47.6 50 0.0017 31.8 7.5 63 1167-1232 10-72 (79)
73 1x79_B RAB GTPase binding effe 47.4 2.5E+02 0.0085 28.7 12.9 42 457-498 46-87 (112)
74 2oqq_A Transcription factor HY 46.7 25 0.00084 30.1 4.6 36 657-692 5-40 (42)
75 3mq7_A Bone marrow stromal ant 46.3 2.6E+02 0.009 28.7 15.4 83 375-460 21-103 (121)
76 2i1j_A Moesin; FERM, coiled-co 45.8 20 0.00069 45.1 5.9 80 381-460 365-444 (575)
77 3mq9_A Bone marrow stromal ant 43.9 3.5E+02 0.012 32.4 16.1 24 321-344 402-425 (471)
78 2i1j_A Moesin; FERM, coiled-co 43.7 98 0.0034 39.0 11.5 104 292-409 332-435 (575)
79 3qh9_A Liprin-beta-2; coiled-c 43.4 81 0.0028 30.5 8.1 60 484-543 19-78 (81)
80 3jsv_C NF-kappa-B essential mo 42.7 2.2E+02 0.0077 28.2 11.3 19 379-397 40-58 (94)
81 3efg_A Protein SLYX homolog; x 42.7 57 0.002 31.1 7.1 57 371-427 6-62 (78)
82 1x8y_A Lamin A/C; structural p 41.9 1.1E+02 0.0036 29.6 8.9 57 803-859 25-81 (86)
83 1deb_A APC protein, adenomatou 41.6 37 0.0013 30.1 5.0 45 975-1019 6-50 (54)
84 1m1j_C Fibrinogen gamma chain; 41.0 2.2E+02 0.0075 34.6 13.5 47 371-417 83-129 (409)
85 2eqb_B RAB guanine nucleotide 38.8 3.1E+02 0.011 27.4 14.4 42 373-414 6-47 (97)
86 3i00_A HIP-I, huntingtin-inter 35.4 2.4E+02 0.0082 29.0 10.7 65 345-412 16-80 (120)
87 2v4h_A NF-kappa-B essential mo 34.8 3.8E+02 0.013 27.3 12.0 40 321-360 60-99 (110)
88 3efg_A Protein SLYX homolog; x 34.0 1E+02 0.0035 29.4 7.3 44 320-363 11-54 (78)
89 2w83_C C-JUN-amino-terminal ki 31.7 1.4E+02 0.0049 28.6 7.6 48 655-702 2-49 (77)
90 3a7o_A Autophagy protein 16; c 31.0 1.5E+02 0.0052 28.0 7.6 56 807-862 19-74 (75)
91 3ghg_B Fibrinogen beta chain; 29.3 6.2E+02 0.021 31.4 14.7 48 367-414 135-184 (461)
92 2no2_A HIP-I, huntingtin-inter 28.9 4.6E+02 0.016 26.3 15.4 50 323-372 54-103 (107)
93 2oqq_A Transcription factor HY 27.1 1.1E+02 0.0039 26.2 5.5 34 757-790 7-40 (42)
94 1l8d_A DNA double-strand break 26.5 4.6E+02 0.016 25.5 13.4 32 332-363 12-43 (112)
95 4e61_A Protein BIM1; EB1-like 25.9 2.6E+02 0.0087 28.4 8.8 41 606-646 21-61 (106)
96 1m1j_C Fibrinogen gamma chain; 25.1 6E+02 0.021 30.9 13.6 46 318-363 86-131 (409)
97 1lwu_C Fibrinogen gamma chain; 24.5 1.4E+02 0.0049 35.2 7.9 45 370-414 3-47 (323)
98 3uux_B Mitochondrial division 24.2 3.2E+02 0.011 31.1 10.2 57 230-293 168-224 (242)
99 1wt6_A Myotonin-protein kinase 23.9 2.9E+02 0.0098 26.8 8.3 61 250-310 14-74 (81)
100 1deq_A Fibrinogen (alpha chain 23.5 1E+03 0.036 28.7 16.4 35 326-360 116-150 (390)
101 1jcd_A Major outer membrane li 23.5 3E+02 0.01 24.6 7.8 47 330-404 4-50 (52)
102 1m1j_B Fibrinogen beta chain; 23.1 1.1E+03 0.039 29.0 17.4 24 422-445 169-192 (464)
103 1deb_A APC protein, adenomatou 22.9 3.2E+02 0.011 24.4 7.6 44 318-361 5-48 (54)
104 3m48_A General control protein 22.7 65 0.0022 26.4 3.1 28 1287-1335 5-32 (33)
105 3ljm_A Coil Ser L9C; de novo d 21.8 88 0.003 24.5 3.5 25 410-434 4-28 (31)
106 1dh3_A Transcription factor CR 21.7 43 0.0015 29.9 2.2 30 1307-1336 19-48 (55)
107 2zqm_A Prefoldin beta subunit 21.5 5.7E+02 0.019 24.9 12.0 94 480-573 2-110 (117)
108 1t2k_D Cyclic-AMP-dependent tr 21.5 56 0.0019 29.4 3.0 40 1308-1347 20-59 (61)
109 2xnx_M M protein, M1-BC1; cell 21.5 3.2E+02 0.011 29.0 8.9 72 487-558 69-140 (146)
110 3a7o_A Autophagy protein 16; c 21.1 2.8E+02 0.0095 26.3 7.4 50 534-583 19-68 (75)
111 2w6a_A ARF GTPase-activating p 20.6 2E+02 0.0068 26.4 6.1 36 1000-1035 20-60 (63)
112 1gd2_E Transcription factor PA 20.3 1.5E+02 0.005 27.9 5.5 41 758-798 27-67 (70)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.18 E-value=7.3e-07 Score=96.22 Aligned_cols=46 Identities=15% Similarity=0.214 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHH
Q 045448 187 TLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLDE 232 (1756)
Q Consensus 187 eLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~e 232 (1756)
.+++++..+..+++.+...+.....++..++..+..+...+..+..
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~ 48 (284)
T 1c1g_A 3 AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQK 48 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444443333333
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.17 E-value=9.4e-07 Score=95.35 Aligned_cols=110 Identities=21% Similarity=0.198 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHHHHHHHhhhhcHH
Q 045448 181 ADSELETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLDERASKADIEVKVLKEALIRLEAERDAGLL 260 (1756)
Q Consensus 181 aEeEIdeLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~eRA~kAE~EIqsLKetLakLEsekdasll 260 (1756)
+..+++.+...+..+..++..+...+......+..+...+..+...+..+...+..+...+..+...+..++..
T Consensus 11 l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 84 (284)
T 1c1g_A 11 LKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEAD------ 84 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 34444444444444444444444444444444444444444444444444433333333333333333333333
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 045448 261 QYNHCLERISTLEKMIIQAQEDSKGLNERASKAEIEA 297 (1756)
Q Consensus 261 Qyqq~lErLS~LE~~Ls~AQeelk~L~ERa~kAE~El 297 (1756)
......++..+...+..+..++..+......+...+
T Consensus 85 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 120 (284)
T 1c1g_A 85 -VASLNRRIQLFEEELDRAQERLATALQKLEEAEKAA 120 (284)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333333333333333333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.80 E-value=8.8e-09 Score=137.15 Aligned_cols=102 Identities=23% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 045448 420 ERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQTLQKLHSQSQHEQKALTLELQNKLQK 499 (1756)
Q Consensus 420 e~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~~Le~l~sqsQeE~~~La~El~~~~~~ 499 (1756)
+.++..++.++..+...+..+..++..++.++..++..+........+.+.. ...++.++..|..++......
T Consensus 1066 e~el~~l~~el~el~~el~~le~~l~~le~el~~l~~~le~l~~~~~~le~~-------l~~Le~eie~L~eeLee~~~~ 1138 (1184)
T 1i84_S 1066 EGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKK-------IRELESHISDLQEDLESEKAA 1138 (1184)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444555555555555544444433222222222 222333333333333322233
Q ss_pred hhhhhhhhHhHHHHHHHHHHHHHHHHhhh
Q 045448 500 MKDMEVCNHDLEEGIEQVKRENQSLVELN 528 (1756)
Q Consensus 500 L~~lE~~k~~l~~~~~~~~ee~~~L~eln 528 (1756)
...++....++...+..+...+..+...|
T Consensus 1139 ~~~le~q~~~L~~ele~L~~~Ieel~~vn 1167 (1184)
T 1i84_S 1139 RNKAEKQKRDLSEELEALKTELEDTLDTT 1167 (1184)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 33333444444444554444444444443
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.73 E-value=1.5e-08 Score=134.86 Aligned_cols=33 Identities=27% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 045448 534 TIQNLQNEIFNLKEMKEKLEKEIALQEDKSNALQLEVRHLK 574 (1756)
Q Consensus 534 ~i~~L~~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~K 574 (1756)
....+..++..++..+..+.. .+.-|.++....
T Consensus 1145 q~~~L~~ele~L~~~Ieel~~--------vn~aq~el~~~~ 1177 (1184)
T 1i84_S 1145 QKRDLSEELEALKTELEDTLD--------TTATQQELRGSD 1177 (1184)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHhhh
Confidence 445666666666666666553 244555555443
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.96 E-value=0.064 Score=60.60 Aligned_cols=10 Identities=20% Similarity=0.082 Sum_probs=3.9
Q ss_pred hhhHHHHHHH
Q 045448 422 ANHSLQVEAE 431 (1756)
Q Consensus 422 ele~Lq~Ele 431 (1756)
.+.....+++
T Consensus 140 ~l~~~~~~~~ 149 (256)
T 3na7_A 140 LALELESLVE 149 (256)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4443333333
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.78 E-value=0.11 Score=56.84 Aligned_cols=108 Identities=21% Similarity=0.281 Sum_probs=57.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 045448 272 LEKMIIQAQEDSKGLNERASKAEIEAQKLKQELSRLENEKEAGLLQYKQCLEMIYALESKISLAEENAGMLNEQTEKAET 351 (1756)
Q Consensus 272 LE~~Ls~AQeelk~L~ERa~kAE~Ele~LKqeL~~lEaEkEa~llQykQ~lEkIseLEkKIs~lEe~v~slnqrierle~ 351 (1756)
|+..+..+.+....+..++.....+++.++.++.....+ ....|+.|...|..+......+..++-.++.
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e----------~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq 116 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ----------SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ 116 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666666666665543332 2234555555555555555555555555555
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHH
Q 045448 352 EVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIF 389 (1756)
Q Consensus 352 Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELs 389 (1756)
.-+.|....+...+--+.+-..|++..+++.=|+.++.
T Consensus 117 ~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~ 154 (189)
T 2v71_A 117 ANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD 154 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554444444444444444555555555544443
No 7
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.72 E-value=0.17 Score=55.34 Aligned_cols=68 Identities=16% Similarity=0.138 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 383 QMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENL 454 (1756)
Q Consensus 383 eLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~L 454 (1756)
.||-.--..+...+....-++.+..+++.+=+..+.|++++. +.+.+...++.+..++...+.|+..+
T Consensus 113 eLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~----EKe~l~~~~QRLkdE~rDLk~El~v~ 180 (189)
T 2v71_A 113 ELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD----EKESLLVSVQRLKDEARDLRQELAVR 180 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCCC-----------------
T ss_pred HHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333344444444444444444443 13334444444444444444444433
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.72 E-value=0.1 Score=58.99 Aligned_cols=77 Identities=16% Similarity=0.227 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 380 KIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQ 459 (1756)
Q Consensus 380 kIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~Iq 459 (1756)
.+..++.++...+.++......+.+...++..+.. ++++.+++.+++.+..+++.++.++......++.++..+.
T Consensus 54 ~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~-----~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~ 128 (256)
T 3na7_A 54 EKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKS-----ERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQE 128 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS-----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555555555555555555555544443322 3345555555555555555555555555555555444444
Q ss_pred HH
Q 045448 460 DE 461 (1756)
Q Consensus 460 dE 461 (1756)
.-
T Consensus 129 ~~ 130 (256)
T 3na7_A 129 DL 130 (256)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 9
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.55 E-value=0.67 Score=49.35 Aligned_cols=113 Identities=17% Similarity=0.150 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 322 LEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSE 401 (1756)
Q Consensus 322 lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~E 401 (1756)
..+|..|+..+..+..++.++...-.++..--+.+..+| .....++...+.....|+..+..|...
T Consensus 41 E~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqI--------------k~L~~kLKEAE~RAE~AERsv~kLEk~ 106 (155)
T 2efr_A 41 EGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEI--------------KVLSDKLKEAETRAEFAERSVTKLEKS 106 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555544444455554444443333333333333 122233466666666666667777777
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 402 ILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQ 455 (1756)
Q Consensus 402 iE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lq 455 (1756)
++++..++...+. .+..+..++++....|..+.-.+.+..+++.+|+
T Consensus 107 id~lEd~L~~~Ke-------k~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~~ 153 (155)
T 2efr_A 107 IDDLEDELYAQKL-------KYKAISEEMKQLEDKVEELLSKNYHLENEVARLK 153 (155)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 7777666666666 5555666666666666666666777777766664
No 10
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.22 E-value=0.58 Score=50.32 Aligned_cols=128 Identities=22% Similarity=0.173 Sum_probs=72.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHHHHHHHhh
Q 045448 176 EAEDKADSELETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLDERASKADIEVKVLKEALIRLEAER 255 (1756)
Q Consensus 176 ~r~~eaEeEIdeLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~eRA~kAE~EIqsLKetLakLEsek 255 (1756)
+|+..++.++..++.++..-..--..++.+..+....+...| ..+.++.++...+++....|...+..|++.-
T Consensus 6 eKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E-------~~~rELq~~~~~L~~~k~~Leke~~~LQa~L 78 (168)
T 3o0z_A 6 EKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLE-------SLNRELQERNRILENSKSQTDKDYYQLQAIL 78 (168)
T ss_dssp ----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777776655444443444444444443444444 4444555566666667777777777777664
Q ss_pred hhcHHHHHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 256 DAGLLQYNHCLERISTLEKMIIQAQEDSKGLNERASKAEIEAQKLKQELSRLENE 310 (1756)
Q Consensus 256 dasllQyqq~lErLS~LE~~Ls~AQeelk~L~ERa~kAE~Ele~LKqeL~~lEaE 310 (1756)
+..--...+..+.+..++.++..++.+++.+..+..++..+...|.+.|..++.+
T Consensus 79 ~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe 133 (168)
T 3o0z_A 79 EAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKE 133 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444456666677777777777677666666666666655554444444444443
No 11
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.21 E-value=1.3 Score=47.10 Aligned_cols=127 Identities=24% Similarity=0.270 Sum_probs=94.4
Q ss_pred HHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHHHHHHHhhhhcHHHHHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 045448 216 LERELNHAQKDAGGLDERASKADIEVKVLKEALIRLEAERDAGLLQYNHCLERISTLEKMIIQAQEDSKGLNERASKAEI 295 (1756)
Q Consensus 216 lEkEIse~QKel~EL~eRA~kAE~EIqsLKetLakLEsekdasllQyqq~lErLS~LE~~Ls~AQeelk~L~ERa~kAE~ 295 (1756)
+|..+..+...+.....++...+.+++..-..+..|+.. ..+..++-..++.+|..+...++....|+.-|+.
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~s-------eekasqrEd~yEeqIk~L~~kLKEAE~RAE~AER 98 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQ-------AEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAER 98 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666555556666666666666666666655 5666777888888999888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 045448 296 EAQKLKQELSRLENEKEAGLLQYKQCLEMIYALESKISLAEENAGMLNEQTEKA 349 (1756)
Q Consensus 296 Ele~LKqeL~~lEaEkEa~llQykQ~lEkIseLEkKIs~lEe~v~slnqrierl 349 (1756)
.+..|...|..++.+.......|..+.+.++..-..+..+......++..++|+
T Consensus 99 sv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~ 152 (155)
T 2efr_A 99 SVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARL 152 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 999999999999998888888888888888877777766655555555555443
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.13 E-value=0.94 Score=66.42 Aligned_cols=59 Identities=10% Similarity=0.109 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHHHhhHHHHHH
Q 045448 184 ELETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLDERASKADIEVK 242 (1756)
Q Consensus 184 EIdeLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~eRA~kAE~EIq 242 (1756)
-|..-+.=+..-..++......|+.++.|+.+-..++..||+++.........+..+..
T Consensus 1900 li~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~ 1958 (3245)
T 3vkg_A 1900 FINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQAN 1958 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555566666777777777777777777777666554444444433
No 13
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.96 E-value=0.81 Score=49.22 Aligned_cols=89 Identities=25% Similarity=0.247 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhh
Q 045448 285 GLNERASKAEIEAQKLKQELSRLENEKEAGLLQYKQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLN 364 (1756)
Q Consensus 285 ~L~ERa~kAE~Ele~LKqeL~~lEaEkEa~llQykQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~Le 364 (1756)
.|.++...++..-..|.+++..+.+..+.-..-..+..+.|.+|+.+|..++..+.....+..++..+...|...|..|+
T Consensus 52 ELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lE 131 (168)
T 3o0z_A 52 ELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSE 131 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555556666777766666666555567888999999999999999999999999999999888888886666
Q ss_pred hhHHHHHHh
Q 045448 365 EEKEAIAFR 373 (1756)
Q Consensus 365 eEKeal~l~ 373 (1756)
.+|..+-.+
T Consensus 132 Ke~a~~eid 140 (168)
T 3o0z_A 132 KEKNNLEID 140 (168)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhhhHH
Confidence 666555543
No 14
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.22 E-value=1.6 Score=64.24 Aligned_cols=92 Identities=10% Similarity=0.113 Sum_probs=54.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 045448 273 EKMIIQAQEDSKGLNERASKAEIEAQKLKQELSRLENEKEAGLLQYKQCLEMIYALESKISLAEENAGMLNEQTEKAETE 352 (1756)
Q Consensus 273 E~~Ls~AQeelk~L~ERa~kAE~Ele~LKqeL~~lEaEkEa~llQykQ~lEkIseLEkKIs~lEe~v~slnqrierle~E 352 (1756)
+..+..|+.++.....++..++.++..+.++|+.++++.+.+..+-..+...+...+.++..|+.-+.++..+-.|=...
T Consensus 2013 r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~ 2092 (3245)
T 3vkg_A 2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQ 2092 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHH
Confidence 34444555555555555555566666666666666666555555555566666666666666666666666666666666
Q ss_pred HHHHHHHHhhhh
Q 045448 353 VKALKQALTGLN 364 (1756)
Q Consensus 353 i~~LkqEL~~Le 364 (1756)
+..++..+..|-
T Consensus 2093 ~~~l~~~~~~L~ 2104 (3245)
T 3vkg_A 2093 SENFNTQMSTVV 2104 (3245)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 666655554443
No 15
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.24 E-value=6.6 Score=52.82 Aligned_cols=12 Identities=17% Similarity=0.437 Sum_probs=5.0
Q ss_pred cccccccCCCCc
Q 045448 62 HRTMSEAFPNQV 73 (1756)
Q Consensus 62 ~~tia~afP~qv 73 (1756)
+.-|+..||+..
T Consensus 586 ~~~v~~lf~~~~ 597 (1080)
T 2dfs_A 586 FKLLPELFQDEE 597 (1080)
T ss_dssp CSHHHHSCC---
T ss_pred cHHHHHHhcccc
Confidence 444555676643
No 16
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.91 E-value=0.68 Score=62.06 Aligned_cols=11 Identities=18% Similarity=0.205 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 045448 483 QHEQKALTLEL 493 (1756)
Q Consensus 483 QeE~~~La~El 493 (1756)
..++..|-.++
T Consensus 983 ~~~v~~L~~e~ 993 (1080)
T 2dfs_A 983 TNRVLSLQEEI 993 (1080)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.50 E-value=0.93 Score=55.93 Aligned_cols=77 Identities=9% Similarity=0.075 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh----hhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 045448 321 CLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALT----GLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAK 396 (1756)
Q Consensus 321 ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~----~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~ 396 (1756)
+.+.+.++...+..++.........+...+.+++...+... .+.+.++.+-....+..++++.++.++...+..+.
T Consensus 454 l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (597)
T 3oja_B 454 LEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEAD 533 (597)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Confidence 34455555566666666666666666666666666665543 33333433333333333344444444444333333
Q ss_pred H
Q 045448 397 Q 397 (1756)
Q Consensus 397 r 397 (1756)
.
T Consensus 534 ~ 534 (597)
T 3oja_B 534 A 534 (597)
T ss_dssp H
T ss_pred h
Confidence 3
No 18
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=93.01 E-value=3.3 Score=41.08 Aligned_cols=93 Identities=18% Similarity=0.252 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHH
Q 045448 298 QKLKQELSRLENEKEAGLLQYKQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQC 377 (1756)
Q Consensus 298 e~LKqeL~~lEaEkEa~llQykQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~ 377 (1756)
..++.++..+..++|.+..++.+|..++-.++.. ...++.++..|...+..++.+-+.+-.++...
T Consensus 5 daIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~--------------~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 5 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEER--------------SKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666666667776665555554444444444 44444444444444433333333333333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 378 LDKIAQMESEIFNAQEHAKQLNSEILM 404 (1756)
Q Consensus 378 lekIseLE~ELseaeeev~rLn~EiE~ 404 (1756)
..++..-+.....++.++..|+..|.-
T Consensus 71 ~~kLee~ek~~~~aE~ev~~L~Rriql 97 (101)
T 3u1c_A 71 EDSLLFAEENAAKAESEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555443
No 19
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.99 E-value=8.2 Score=41.15 Aligned_cols=124 Identities=19% Similarity=0.239 Sum_probs=84.0
Q ss_pred HHHHHHhhHHhhhhhhhhhhHHHHHHHHhHHHHHHHHHhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHhHHhHhhhhhH
Q 045448 701 KLLEKNVTLEHSLAGANVELEGLRAKSKSLEDFCRMLKNEKSNLLNERSTLVSQLEDVEKRLGNLERRFTKLEEKYADIE 780 (1756)
Q Consensus 701 kLlEkns~LE~SLSd~n~ELe~lR~K~K~lEEscq~l~~ekS~L~~Ek~~L~SQL~~~t~~l~~Le~k~t~LE~~~s~~~ 780 (1756)
.-..+.+.||-.|+.+..+|++.+.+++.+|.. +.+...|. +.+..+...+..|...++.=...-..+.
T Consensus 10 ~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~~----r~~~~~l~-------~~~~~~~~e~~~L~~~l~~E~~~R~~aE 78 (154)
T 2ocy_A 10 ESVDKQSHLEEQLNKSLKTIASQKAAIENYNQL----KEDYNTLK-------RELSDRDDEVKRLREDIAKENELRTKAE 78 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH----HHHHHHHH-------THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH-------HHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 447889999999999999999999999999853 33434343 4445566777777777766666666777
Q ss_pred HHHhHhHHHHHHHHHHHHHH-----------HHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHH
Q 045448 781 REKESTLSQVEELRYSLTNE-----------QLERANYVQSSESRMVDLESLVHQLQEETTLRKKE 835 (1756)
Q Consensus 781 ~Eke~~~~qv~~L~~~L~~e-----------~e~~~~~~~s~e~~l~~le~~i~~Lqee~~~~~~e 835 (1756)
.++..+-..+++|-.+|-.| +..........+.++.+.+..+..||+....++..
T Consensus 79 ~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v 144 (154)
T 2ocy_A 79 EEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKV 144 (154)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777775554333 33334444455566666666666666666665544
No 20
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=90.40 E-value=5.4 Score=39.55 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=24.4
Q ss_pred HHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 355 ALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMG 405 (1756)
Q Consensus 355 ~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l 405 (1756)
..+..+..|.-+++.+...+.+|-.++...+.....++.++..|+..+..+
T Consensus 6 aIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~l 56 (101)
T 3u1c_A 6 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVT 56 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555554444444444444444333
No 21
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=89.89 E-value=6.8 Score=38.66 Aligned_cols=47 Identities=23% Similarity=0.220 Sum_probs=21.0
Q ss_pred HHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 355 ALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSE 401 (1756)
Q Consensus 355 ~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~E 401 (1756)
..+..+..|.-+++.+...+.+|-..+...+.....++.++..++..
T Consensus 6 ~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kK 52 (101)
T 3u59_A 6 AIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKK 52 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33444444444555555554444444444444444444433333333
No 22
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=89.89 E-value=7.5 Score=38.35 Aligned_cols=92 Identities=22% Similarity=0.323 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHH
Q 045448 298 QKLKQELSRLENEKEAGLLQYKQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQC 377 (1756)
Q Consensus 298 e~LKqeL~~lEaEkEa~llQykQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~ 377 (1756)
..++.++..+..++|.+..++ ..++..+...+.+...++.++..|+..+..++.+-+.+..++..+
T Consensus 5 d~iKkKm~~lk~e~e~a~d~a--------------e~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a 70 (101)
T 3u59_A 5 EAIKKKMQMLKLDKENAIDRA--------------EQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEA 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666655433 334444445555566666666666666644555445444454555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 378 LDKIAQMESEIFNAQEHAKQLNSEIL 403 (1756)
Q Consensus 378 lekIseLE~ELseaeeev~rLn~EiE 403 (1756)
..++..-+.....++.++..|+..|.
T Consensus 71 ~~kLe~~ek~~~~AE~evasLnRriq 96 (101)
T 3u59_A 71 QEKLEQAEKKATDAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555554
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.58 E-value=2.6 Score=51.99 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 045448 327 ALESKISLAEENAGMLNEQTEKAETEVKALKQA 359 (1756)
Q Consensus 327 eLEkKIs~lEe~v~slnqrierle~Ei~~LkqE 359 (1756)
.++..+...+..+..+.++..+.+..+...+.+
T Consensus 453 ~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~ 485 (597)
T 3oja_B 453 QLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAE 485 (597)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444
No 24
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=86.83 E-value=15 Score=38.79 Aligned_cols=101 Identities=20% Similarity=0.240 Sum_probs=49.1
Q ss_pred HHHHHHhhhhcHHHHHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 045448 248 LIRLEAERDAGLLQYNHCLERISTLEKMIIQAQEDSKGLNERASKAEIEAQKLKQELSRLENEKEAGLLQYKQCLEMIYA 327 (1756)
Q Consensus 248 LakLEsekdasllQyqq~lErLS~LE~~Ls~AQeelk~L~ERa~kAE~Ele~LKqeL~~lEaEkEa~llQykQ~lEkIse 327 (1756)
+.-++.+-+.+-..+...+.++..++........-.+.|..|....+..+..|...|+....--+.+--.|.....++.-
T Consensus 5 i~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~ 84 (147)
T 2b9c_A 5 IQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVI 84 (147)
T ss_dssp ------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34444554444445666666676666666666555666666666666666666666654333222222224444444444
Q ss_pred HHHHHHHHHHHHhhHHHHHHH
Q 045448 328 LESKISLAEENAGMLNEQTEK 348 (1756)
Q Consensus 328 LEkKIs~lEe~v~slnqrier 348 (1756)
++..+..++..+......+..
T Consensus 85 ~E~dLeraeeRae~aE~k~~e 105 (147)
T 2b9c_A 85 IESDLERAEERAELSEGKCAE 105 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444433333333333
No 25
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=86.46 E-value=24 Score=35.87 Aligned_cols=100 Identities=17% Similarity=0.222 Sum_probs=51.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045448 339 AGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVL 418 (1756)
Q Consensus 339 v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~ 418 (1756)
.+.+....+++..|++.++..+.. .+......|+.|..++......-+.+...+-.+++.--.++..--.
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~----------~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~ 74 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEH----------QYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRA 74 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 344555556666666666655522 1112233344555554444444444443333333333333322223
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 419 LERANHSLQVEAESLVQKIAIKDQELSQKQ 448 (1756)
Q Consensus 419 Le~ele~Lq~Ele~l~eKIs~lerEL~eKq 448 (1756)
-..++.+++..|...-++.+.++.+|.+|.
T Consensus 75 t~~SLeD~E~k~n~aiErnalLE~El~EKe 104 (111)
T 2v66_B 75 TIVSLEDFEQRLNQAIERNAFLESELDEKE 104 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677777777777777778888877553
No 26
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=84.76 E-value=15 Score=38.79 Aligned_cols=131 Identities=16% Similarity=0.173 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHHHHHHHhhhhcHHHHHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 045448 216 LERELNHAQKDAGGLDERASKADIEVKVLKEALIRLEAERDAGLLQYNHCLERISTLEKMIIQAQEDSKGLNERASKAEI 295 (1756)
Q Consensus 216 lEkEIse~QKel~EL~eRA~kAE~EIqsLKetLakLEsekdasllQyqq~lErLS~LE~~Ls~AQeelk~L~ERa~kAE~ 295 (1756)
+|.++...+..+.....+...|+............|+.. ....-+++..++..+..|..- +..+..
T Consensus 8 lEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r-------~~~deEr~~~lE~qLkeak~~-------aeeadr 73 (147)
T 2b9c_A 8 VEEELDRAQERLATALQKLEEAEKAADESERGMKVIESR-------AQKDEEKMEIQEIQLKEAKHI-------AEDADR 73 (147)
T ss_dssp ---CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH-------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hcccHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 333444444444444443333333333333333334433 334445566666666544333 333444
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045448 296 EAQKLKQELSRLENEKEAGLLQYKQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQAL 360 (1756)
Q Consensus 296 Ele~LKqeL~~lEaEkEa~llQykQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL 360 (1756)
.+.....+|.-++.+.+.+-.+...+..+|..|+..|.....++.++...-..+-.--+.+...|
T Consensus 74 KyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I 138 (147)
T 2b9c_A 74 KYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEV 138 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHH
Confidence 44444444444444444444334444455666666666666666665544444333333444444
No 27
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=83.15 E-value=47 Score=34.50 Aligned_cols=140 Identities=19% Similarity=0.221 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 045448 294 EIEAQKLKQELSRLENEKEAGLLQYKQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFR 373 (1756)
Q Consensus 294 E~Ele~LKqeL~~lEaEkEa~llQykQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~ 373 (1756)
+..++++..++.....+.+...--+.+-..++++|.+.=+.-+..+..+.+....+....+.-..-+ |.....+
T Consensus 17 ~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~L------krn~~qQ 90 (167)
T 4gkw_A 17 KQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLL------KRNSQQQ 90 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHH------HhhhHHH
Confidence 3334444444444444444333223344456666666655555555555444444433333333333 3333445
Q ss_pred hHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHH
Q 045448 374 YDQCLD--KIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAI 439 (1756)
Q Consensus 374 y~q~le--kIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~ 439 (1756)
.+|++. ++.+||..+.+...-+..|...|.-+..+++.-+-....-=.+-+.|..+-+.+.++|++
T Consensus 91 nQQSlDiRKLrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~m 158 (167)
T 4gkw_A 91 NQQSLDMRKLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAH 158 (167)
T ss_dssp HHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhhHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHH
Confidence 555554 456666666666555666666555554444433222222223455555666666665554
No 28
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=82.00 E-value=43 Score=35.76 Aligned_cols=91 Identities=16% Similarity=0.233 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 376 QCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQ 455 (1756)
Q Consensus 376 q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lq 455 (1756)
++-++.+.|+..|..+..++......+..+. ...+++..+..++.....++..|.
T Consensus 10 ~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE-------------------------~~r~~~~~l~~~~~~~~~e~~~L~ 64 (154)
T 2ocy_A 10 ESVDKQSHLEEQLNKSLKTIASQKAAIENYN-------------------------QLKEDYNTLKRELSDRDDEVKRLR 64 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH-------------------------HHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3455667777777777776665544433321 122223334455677888888999
Q ss_pred HHHHHHHHhHhhHHHHHHHH----HHHHhhhHHHHHHHHH
Q 045448 456 ASLQDEQSRFAQVEVTLQTL----QKLHSQSQHEQKALTL 491 (1756)
Q Consensus 456 s~IqdE~~K~~q~E~al~~L----e~l~sqsQeE~~~La~ 491 (1756)
..+..|..++..||.....+ |.|-.++=+|++.++.
T Consensus 65 ~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa 104 (154)
T 2ocy_A 65 EDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVA 104 (154)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887554 3444555556666553
No 29
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=80.47 E-value=16 Score=35.27 Aligned_cols=69 Identities=20% Similarity=0.171 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 378 LDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELEN 453 (1756)
Q Consensus 378 lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~ 453 (1756)
++-+..||.+|+.|-..+.-|.-+++.+..+-.++.+ +++.+....+.+...+..+.++....+..+..
T Consensus 5 ~ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~-------e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~ 73 (81)
T 2jee_A 5 LEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQ-------EVQNAQHQREELERENNHLKEQQNGWQERLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888777777777666555555555 55555555555555666665555555554433
No 30
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=79.24 E-value=6.3 Score=39.46 Aligned_cols=73 Identities=16% Similarity=0.280 Sum_probs=53.3
Q ss_pred HHhHHHHHHHHHhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHhHHhHhhhhhHHHHhHhHHHHHHHHHHHHH
Q 045448 727 SKSLEDFCRMLKNEKSNLLNERSTLVSQLEDVEKRLGNLERRFTKLEEKYADIEREKESTLSQVEELRYSLTN 799 (1756)
Q Consensus 727 ~K~lEEscq~l~~ekS~L~~Ek~~L~SQL~~~t~~l~~Le~k~t~LE~~~s~~~~Eke~~~~qv~~L~~~L~~ 799 (1756)
++.+||-..-----++-|-|||++|+-|++.....|..+++-++.+-..+-+-.+|.+...-....|+..+..
T Consensus 4 L~EvEEKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~ 76 (103)
T 4h22_A 4 LAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAE 76 (103)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554444445577888999999999999999999999999999888888888877766655555444433
No 31
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=79.10 E-value=4.4 Score=42.32 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=69.2
Q ss_pred hhHHhhhhhhhhhhHHHHHHHHhHHHHHHHHHhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHhHHhHhhhhhHHHHhHh
Q 045448 707 VTLEHSLAGANVELEGLRAKSKSLEDFCRMLKNEKSNLLNERSTLVSQLEDVEKRLGNLERRFTKLEEKYADIEREKEST 786 (1756)
Q Consensus 707 s~LE~SLSd~n~ELe~lR~K~K~lEEscq~l~~ekS~L~~Ek~~L~SQL~~~t~~l~~Le~k~t~LE~~~s~~~~Eke~~ 786 (1756)
+-||-.|+++...|.+.+.+++.++-. +.+.+. |.+.|..+...+..|...++.=...-..+..++..+
T Consensus 4 s~LEd~L~~~r~~l~~~~~~~~~le~l----~~~l~~-------l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~i 72 (135)
T 2e7s_A 4 GSLEEQLNKSLKTIASQKAAIENYNQL----KEDYNT-------LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKL 72 (135)
T ss_dssp --CCSTTTHHHHHHHHHHHHHHHHHHH----HHHHHH-------HHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-------HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999988853 333333 334455667777777777777666777777777777
Q ss_pred HHHHHHHHHHHHHH-----------HHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHH
Q 045448 787 LSQVEELRYSLTNE-----------QLERANYVQSSESRMVDLESLVHQLQEETTLRKKE 835 (1756)
Q Consensus 787 ~~qv~~L~~~L~~e-----------~e~~~~~~~s~e~~l~~le~~i~~Lqee~~~~~~e 835 (1756)
-..+++|-.+|-.| +..........+.++.+.+..+..||+....++..
T Consensus 73 e~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~v 132 (135)
T 2e7s_A 73 NKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKKV 132 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777775555443 33333344444555555555566665555555443
No 32
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=78.34 E-value=8.8 Score=40.11 Aligned_cols=70 Identities=19% Similarity=0.150 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 489 LTLELQNKLQKMKDMEVCNHDLEEGIEQVKRENQSLVELNSSSTITIQNLQNEIFNLKEMKEKLEKEIAL 558 (1756)
Q Consensus 489 La~El~~~~~~L~~lE~~k~~l~~~~~~~~ee~~~L~eln~sS~~~i~~L~~Ei~~lke~~~~LE~Ev~~ 558 (1756)
+|.|+.........|+....++..++..+++++-+++...-++.-.+..|+.++..|...+.+||.+++-
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5567777777777777788888888888888888888888888888889999999999999998887653
No 33
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=78.11 E-value=7.9 Score=36.79 Aligned_cols=29 Identities=21% Similarity=0.119 Sum_probs=11.1
Q ss_pred HHhhhhhhHHHHHHhhHHHHHHHHHHHHH
Q 045448 359 ALTGLNEEKEAIAFRYDQCLDKIAQMESE 387 (1756)
Q Consensus 359 EL~~LeeEKeal~l~y~q~lekIseLE~E 387 (1756)
.+..|.-+++.+..++.++..++...+..
T Consensus 7 Km~~lk~e~d~a~~~~~~~e~~l~~~e~~ 35 (81)
T 1ic2_A 7 KMQMLKLDKENALDRAEQAEADKKAAEER 35 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333343333333333333333333
No 34
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=76.78 E-value=16 Score=36.29 Aligned_cols=65 Identities=17% Similarity=0.236 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHH----HHHHhhhHHHHHHHHH
Q 045448 427 QVEAESLVQKIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQTL----QKLHSQSQHEQKALTL 491 (1756)
Q Consensus 427 q~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~~L----e~l~sqsQeE~~~La~ 491 (1756)
..+|+.+.+.|..+..++.....++..|...+..|..++..+|.....+ |.|-.++=+|++.++.
T Consensus 4 ~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa 72 (97)
T 2eqb_B 4 GSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVA 72 (97)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888899999999999999999999999999999999887554 3444555556665553
No 35
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=76.53 E-value=13 Score=35.81 Aligned_cols=60 Identities=37% Similarity=0.427 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 045448 532 TITIQNLQNEIFNLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIMGLSRRYQALVEQV 591 (1756)
Q Consensus 532 ~~~i~~L~~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln~~~~~l~E~~ 591 (1756)
..+|.-|+.||..||+.+..|..++.---.....|.++..++++|...-+.+.++|.-.+
T Consensus 19 vdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 19 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346777888888888888888877766556677788888888888888888877776654
No 36
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=74.73 E-value=71 Score=32.42 Aligned_cols=32 Identities=13% Similarity=0.318 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 179 DKADSELETLKKTLAEIEAEKEAILMQYQQSL 210 (1756)
Q Consensus 179 ~eaEeEIdeLQkkI~aLQTEKE~LesQyEe~k 210 (1756)
.--+.+|..|+.+|..+..++..+..++....
T Consensus 16 ~~ye~~I~~LR~qid~~~~e~a~l~leldn~~ 47 (119)
T 3ol1_A 16 DLYEEEMRELRRQVDQLTNDKARVEVERDNLA 47 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999888888777776555444
No 37
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=74.20 E-value=16 Score=35.39 Aligned_cols=68 Identities=15% Similarity=0.297 Sum_probs=45.8
Q ss_pred hhhhhHHHHHHHHhHHHHHHHHHhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHhHHhHhhhhhHHHH
Q 045448 716 ANVELEGLRAKSKSLEDFCRMLKNEKSNLLNERSTLVSQLEDVEKRLGNLERRFTKLEEKYADIEREK 783 (1756)
Q Consensus 716 ~n~ELe~lR~K~K~lEEscq~l~~ekS~L~~Ek~~L~SQL~~~t~~l~~Le~k~t~LE~~~s~~~~Ek 783 (1756)
...++..++.++...+....-|...+..|..||..|+-|+..+.+....|..+...||..+.+++..+
T Consensus 19 ~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 19 QLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555556666677777777777788888888888888888888776554
No 38
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=73.84 E-value=3.6 Score=39.48 Aligned_cols=74 Identities=14% Similarity=0.152 Sum_probs=58.3
Q ss_pred hhhhHHHHHHhhhhhhHhHhhhhhhHhHHHHHHHHHhhhchhhhhhhHHhhhchhhhhhhhhHHHHHHHHHHhh
Q 045448 1103 GELQGKVELLGRKLEMKEAEGLHLNETVDKLQKELHEVSDLNDQLNIQIFIGHDSLRQKASDLLEAEQKLKATH 1176 (1756)
Q Consensus 1103 ~~L~~~v~~l~~kl~~~e~e~~~l~~~~~~~~~eL~~~~s~~~~l~~q~~~~~~~l~~k~~~lle~~~~~~~~~ 1176 (1756)
++|..+...+..|++.+|.+|..|++.+..+...|...++--+++-.++......|-.|=.+|.+..+.+.-+-
T Consensus 2 ~~l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL~ 75 (79)
T 3cvf_A 2 SHMAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARLA 75 (79)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 45666677788999999999999999999999999999999999999999988888888888888877665443
No 39
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=73.74 E-value=45 Score=33.89 Aligned_cols=74 Identities=11% Similarity=0.118 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHHHHHHHh
Q 045448 181 ADSELETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLDERASKADIEVKVLKEALIRLEAE 254 (1756)
Q Consensus 181 aEeEIdeLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~eRA~kAE~EIqsLKetLakLEse 254 (1756)
+..+-..+.-++..++...+.++..|+.-...-...|.++..+.+.+....-.-...++.+.+|++.|.+|..-
T Consensus 32 ~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~ 105 (119)
T 3ol1_A 32 LTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKL 105 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445555555555556655555566667777776666555544455666677777777776544
No 40
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=73.20 E-value=25 Score=36.81 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 045448 380 KIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQE 443 (1756)
Q Consensus 380 kIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerE 443 (1756)
.+..|+..+.....++..++.++..+..+++.+.+ ++..++.++..|..++..++.+
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~-------e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIAAQIKAESSAK-------EIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444 4444444444444444444333
No 41
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=72.88 E-value=31 Score=35.40 Aligned_cols=99 Identities=18% Similarity=0.221 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhHHhHhhhhhHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 045448 759 EKRLGNLERRFTKLEEKYADIEREKESTLSQVEELRYSLTNEQLERANYVQSSESRMVDLESLVHQLQEETTLRKKEFEE 838 (1756)
Q Consensus 759 t~~l~~Le~k~t~LE~~~s~~~~Eke~~~~qv~~L~~~L~~e~e~~~~~~~s~e~~l~~le~~i~~Lqee~~~~~~e~e~ 838 (1756)
+..+.......++|-..+..+.+|++++..+-..|..+|.-=...+...+......++.+|..+..+..++...-.+|+.
T Consensus 30 ~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~ 109 (131)
T 3tnu_A 30 SELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKI 109 (131)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677778888888888888888888888888877777788888889999999999999999999999999987
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 045448 839 ELDKAVKAQVEIFILQKFI 857 (1756)
Q Consensus 839 e~~k~~~aq~ei~ilq~~l 857 (1756)
=++==+..-+||-.-.+.|
T Consensus 110 Ll~vKl~Ld~EIatYRkLL 128 (131)
T 3tnu_A 110 LLDVKTRLEQEIATYRRLL 128 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 7775556666665555443
No 42
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=72.75 E-value=95 Score=32.31 Aligned_cols=50 Identities=24% Similarity=0.287 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHhHHHHHHHHHHHhHh
Q 045448 602 GSAVKELQEENSKLKEVCKEQGDEKEVLHEKLKNMDNLLKKNAALEGSLS 651 (1756)
Q Consensus 602 ~~~i~~Lq~en~kLkE~~~~~~~Ek~~l~ekl~~~e~L~~k~~~le~sls 651 (1756)
+--|-.||.-|.--...+.+++.|...++.+++-.+.++.+|+.-.++-|
T Consensus 45 qgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQS 94 (167)
T 4gkw_A 45 QGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQS 94 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhh
Confidence 33456677777777788888888999999999999999999887776654
No 43
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=72.59 E-value=30 Score=32.89 Aligned_cols=73 Identities=18% Similarity=0.219 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhh
Q 045448 432 SLVQKIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQTLQKLHSQSQHEQKALTLELQNKLQKMKDME 504 (1756)
Q Consensus 432 ~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~~Le~l~sqsQeE~~~La~El~~~~~~L~~lE 504 (1756)
.+..|++.+..+.+.....++.++..+.....+..++|.-+.+|++-+++++.+++..-..+...+.+|..-+
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeae 75 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELAD 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888888888888888888888888888999999999999999999999988888888887777643
No 44
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=72.50 E-value=37 Score=34.68 Aligned_cols=97 Identities=13% Similarity=0.296 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhHHhHhhhhhHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 045448 760 KRLGNLERRFTKLEEKYADIEREKESTLSQVEELRYSLTNEQLERANYVQSSESRMVDLESLVHQLQEETTLRKKEFEEE 839 (1756)
Q Consensus 760 ~~l~~Le~k~t~LE~~~s~~~~Eke~~~~qv~~L~~~L~~e~e~~~~~~~s~e~~l~~le~~i~~Lqee~~~~~~e~e~e 839 (1756)
..+..-....++|-..+..+.+|++++..+...|..+|.-=...+...+......++.+|..+..+..++...-.+|+.=
T Consensus 29 ~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~L 108 (129)
T 3tnu_B 29 DDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQEL 108 (129)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44555556667777777788888888888888888888777777888888888999999999999999999999999877
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045448 840 LDKAVKAQVEIFILQKF 856 (1756)
Q Consensus 840 ~~k~~~aq~ei~ilq~~ 856 (1756)
++==+..-+||-.-.+.
T Consensus 109 lnvKl~Ld~EIatYRkL 125 (129)
T 3tnu_B 109 MNTKLALDVEIATYRKL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77555566666554444
No 45
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=72.33 E-value=22 Score=34.19 Aligned_cols=59 Identities=17% Similarity=0.202 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 400 SEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASL 458 (1756)
Q Consensus 400 ~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~I 458 (1756)
...+.+.++++.++-.+..|+++....+..+.+-...|+.+.+.|..+..|+.+|++.+
T Consensus 19 ~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 19 RKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34456777777778778888889999999999999999999999999999999998876
No 46
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=71.51 E-value=15 Score=39.00 Aligned_cols=67 Identities=13% Similarity=0.211 Sum_probs=58.1
Q ss_pred HhhhhhhhhhhHHHHHHHHhHHHHHHHHHhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHhHHhHhh
Q 045448 710 EHSLAGANVELEGLRAKSKSLEDFCRMLKNEKSNLLNERSTLVSQLEDVEKRLGNLERRFTKLEEKY 776 (1756)
Q Consensus 710 E~SLSd~n~ELe~lR~K~K~lEEscq~l~~ekS~L~~Ek~~L~SQL~~~t~~l~~Le~k~t~LE~~~ 776 (1756)
-..+..+..|+..++.+++++++.+.-...-.-.|.+|-.+|=-|+..++.++.+|+..|..|=.+.
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788889999999999999999888888889999999999999999999999999887775554
No 47
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=71.44 E-value=28 Score=37.02 Aligned_cols=78 Identities=17% Similarity=0.214 Sum_probs=53.8
Q ss_pred hhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHhHHhHhhhhhHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhH
Q 045448 739 NEKSNLLNERSTLVSQLEDVEKRLGNLERRFTKLEEKYADIEREKESTLSQVEELRYSLTNEQLERANYVQSSESRMVDL 818 (1756)
Q Consensus 739 ~ekS~L~~Ek~~L~SQL~~~t~~l~~Le~k~t~LE~~~s~~~~Eke~~~~qv~~L~~~L~~e~e~~~~~~~s~e~~l~~l 818 (1756)
.+.|.+.. .++||+++.-...+..|....+.|+.++.++..|......-+..+++.+. +...+++-+
T Consensus 49 ~e~~~~~~--~~~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~-----------aLqlq~n~l 115 (152)
T 3a7p_A 49 QDNSGAIG--GNIVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALI-----------SGTIENNVL 115 (152)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
T ss_pred HhhccCCC--cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Confidence 33444444 34999999989999999999999999999999888877776666665533 445556666
Q ss_pred HHHHHHHHHHH
Q 045448 819 ESLVHQLQEET 829 (1756)
Q Consensus 819 e~~i~~Lqee~ 829 (1756)
+.....|+.++
T Consensus 116 E~kl~kLq~EN 126 (152)
T 3a7p_A 116 QQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666666
No 48
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=69.79 E-value=1e+02 Score=31.41 Aligned_cols=59 Identities=14% Similarity=0.175 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 345 QTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEIL 403 (1756)
Q Consensus 345 rierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~EiE 403 (1756)
.+..+...-..++..|+.|+-.+|.+--..-.....+..+|.++..|-+...-|..++.
T Consensus 43 El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 43 DLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555555555555556666666555555444444443
No 49
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=69.79 E-value=1e+02 Score=31.55 Aligned_cols=88 Identities=16% Similarity=0.192 Sum_probs=58.5
Q ss_pred HhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 045448 263 NHCLERISTLEKMIIQAQEDSKGLNERASKAEIEAQKLKQELSRLENEKEAGLLQYKQCLEMIYALESKISLAEENAGML 342 (1756)
Q Consensus 263 qq~lErLS~LE~~Ls~AQeelk~L~ERa~kAE~Ele~LKqeL~~lEaEkEa~llQykQ~lEkIseLEkKIs~lEe~v~sl 342 (1756)
+.|..----|+.++..+|+.+.+..-++...-.-+.+|+..|..-.+. + +.++-+|+.+|..+...++..
T Consensus 21 ~ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq---~-------q~~vqeLqgEI~~Lnq~Lq~a 90 (121)
T 3mq7_A 21 MEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQ---G-------QKKVEELEGEITTLNHKLQDA 90 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-------HHHHHHHHHHHHHHHHHHHHH
Confidence 345554455778888888887777667777766777777766653332 1 345666666666666666667
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045448 343 NEQTEKAETEVKALKQAL 360 (1756)
Q Consensus 343 nqrierle~Ei~~LkqEL 360 (1756)
...+++++.+...|...|
T Consensus 91 ~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 91 SAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhchhhhhHh
Confidence 777777777777776666
No 50
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=68.93 E-value=56 Score=33.37 Aligned_cols=13 Identities=23% Similarity=0.455 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 045448 382 AQMESEIFNAQEH 394 (1756)
Q Consensus 382 seLE~ELseaeee 394 (1756)
..||.++..+..+
T Consensus 85 ~~lE~eL~~~r~e 97 (129)
T 3tnu_B 85 AELEEALQKAKQD 97 (129)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHH
Confidence 3333333333333
No 51
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=65.15 E-value=61 Score=31.30 Aligned_cols=82 Identities=22% Similarity=0.302 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhh
Q 045448 423 NHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQTLQKLHSQSQHEQKALTLELQNKLQKMKD 502 (1756)
Q Consensus 423 le~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~~Le~l~sqsQeE~~~La~El~~~~~~L~~ 502 (1756)
+..|+.++..+...-+.+.-+++..+..++-++...++|..++..+|..+..|-+ -+.+
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~Lrk---------------------dvD~ 60 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQ---------------------DVDN 60 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------------------THHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------hHHH
Confidence 4556666777777777777888888888899999999999999998887665533 3444
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHH
Q 045448 503 MEVCNHDLEEGIEQVKRENQSLV 525 (1756)
Q Consensus 503 lE~~k~~l~~~~~~~~ee~~~L~ 525 (1756)
.--.+.+|+..+..+.+++.-|.
T Consensus 61 a~l~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 61 ASLARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455666666666666665544
No 52
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=64.72 E-value=21 Score=34.64 Aligned_cols=49 Identities=24% Similarity=0.405 Sum_probs=37.8
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhhhhhH
Q 045448 673 FLREEKSSLVAEKATLLSQLQIMTENMQKLLEKNVTLEHSLAGANVELE 721 (1756)
Q Consensus 673 ~Lke~~s~~~sEK~aL~~qlq~~~~~m~kLlEkns~LE~SLSd~n~ELe 721 (1756)
.|...+..+..||..|..|+....+.++.|.....-||..|.+++..|+
T Consensus 39 ele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 39 ELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344455556667777777777788899999999999999999988776
No 53
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=64.53 E-value=42 Score=41.69 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 045448 327 ALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIA 371 (1756)
Q Consensus 327 eLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~ 371 (1756)
+|+.+|.-++..|.++-+++.-|+.-++.+..+|.+||-|-++-+
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqi 158 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKI 158 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666666666666655555544443
No 54
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=61.10 E-value=40 Score=35.30 Aligned_cols=123 Identities=21% Similarity=0.220 Sum_probs=61.3
Q ss_pred hHHhHhhhhhHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 770 TKLEEKYADIEREKESTLSQVEELRYSLTNEQLERANYVQSSESRMVDLESLVHQLQEETTLRKKEFEEELDKAVKAQVE 849 (1756)
Q Consensus 770 t~LE~~~s~~~~Eke~~~~qv~~L~~~L~~e~e~~~~~~~s~e~~l~~le~~i~~Lqee~~~~~~e~e~e~~k~~~aq~e 849 (1756)
+.||+.++.+..++.+...++..+-. +..+...+.+-+. +....+..|+.+ +.++..+-..|--
T Consensus 4 s~LEd~L~~~r~~l~~~~~~~~~le~-l~~~l~~l~~~l~-------~~~~e~~~L~~~-------l~eE~~~R~~aE~- 67 (135)
T 2e7s_A 4 GSLEEQLNKSLKTIASQKAAIENYNQ-LKEDYNTLKRELS-------DRDDEVKRLRED-------IAKENELRTKAEE- 67 (135)
T ss_dssp --CCSTTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTT-------THHHHHHTHHHH-------HHHTTSHHHHHHH-
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh-------hhHHHHHHHHHH-------HHHHHHHHHHHHH-
Confidence 67899999999999998888877754 3334444443333 333333333222 2221111111100
Q ss_pred HHHHHHHHHHHHHhhhhhHHHhHHHHHhh----hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 045448 850 IFILQKFIKDLEEKNLSLLIECQKHVEAS----KLSDKLIAELESENLEQQVETEFLLDELEKLR 910 (1756)
Q Consensus 850 i~ilq~~l~d~eekn~sLl~ecqk~~e~~----k~se~~iseLE~e~~~~q~e~~~l~~~~~~lr 910 (1756)
...+.=.+||++-.+||-|--+-+..- +-.+.+...|+........=++++-....-|+
T Consensus 68 --~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK 130 (135)
T 2e7s_A 68 --EADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLK 130 (135)
T ss_dssp --TTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC-----------
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012233568999999999988877653 33355555555555555555555544444443
No 55
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=61.06 E-value=74 Score=30.74 Aligned_cols=73 Identities=11% Similarity=0.141 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcHHHHHhhHHHHHHHHHHHHHHHH
Q 045448 180 KADSELETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAGGLDERASKADIEVKVLKEALIRLE 252 (1756)
Q Consensus 180 eaEeEIdeLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~EL~eRA~kAE~EIqsLKetLakLE 252 (1756)
.+..+-..+.-++..++...+..+..|+.-...-...|.++..+.+.+....-.-...+..+.+|++.|.+|.
T Consensus 11 ~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 11 QLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444455555555555555666666666667777777777766655555556666777777776663
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=59.69 E-value=2.2e+02 Score=34.36 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 045448 184 ELETLKKTLAEIEAEKEAILMQYQQSLQKFSSLERELNHAQKDAG 228 (1756)
Q Consensus 184 EIdeLQkkI~aLQTEKE~LesQyEe~keKLsElEkEIse~QKel~ 228 (1756)
++...+++...+..++..++..+........+.+..+..+...+.
T Consensus 354 ~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e 398 (487)
T 3oja_A 354 QVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIE 398 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhh
Confidence 334444444455555555555555555555555555555544443
No 57
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=58.57 E-value=33 Score=32.50 Aligned_cols=62 Identities=11% Similarity=0.136 Sum_probs=48.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHhhhhhhhhHHHHhHHHhhHHH
Q 045448 1167 EAEQKLKATHNLNVELCITVEDLKRECDELKLIKENAEKRILEISRDCSKQERELECLQEVNKSL 1231 (1756)
Q Consensus 1167 e~~~~~~~~~~~~~el~~~v~~l~~~~~e~~~~~~~~e~~i~~ls~~~~~q~~ei~~l~e~n~~L 1231 (1756)
++-.|++++...|.+|-+.|.+|+...++++.-++.+...+..+-+.-+ .-|.-|++....|
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld---~KI~eL~elrq~L 65 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILD---GKIFELTELRDNL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHH
Confidence 4668899999999999999999999999999888877777776666554 3444455554444
No 58
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=57.64 E-value=1.2e+02 Score=30.86 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHhh
Q 045448 325 IYALESKISLAEENAGM 341 (1756)
Q Consensus 325 IseLEkKIs~lEe~v~s 341 (1756)
|+.|..++..++..+..
T Consensus 26 i~~L~~~L~~AEeaL~~ 42 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVA 42 (110)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444455555544444
No 59
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=56.43 E-value=22 Score=33.67 Aligned_cols=64 Identities=17% Similarity=0.162 Sum_probs=56.3
Q ss_pred HHhhhhhhHhHhhhhhhHhHHHHHHHHHhhhchhhhhhhHHhhhchhhhhhhhhHHHHHHHHHH
Q 045448 1111 LLGRKLEMKEAEGLHLNETVDKLQKELHEVSDLNDQLNIQIFIGHDSLRQKASDLLEAEQKLKA 1174 (1756)
Q Consensus 1111 ~l~~kl~~~e~e~~~l~~~~~~~~~eL~~~~s~~~~l~~q~~~~~~~l~~k~~~lle~~~~~~~ 1174 (1756)
.+..|++.+|++|..|.+.+..+...|...++--+++-.++......|-.|=.+|.+..+.+.-
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999888888888888888776643
No 60
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=55.85 E-value=67 Score=32.72 Aligned_cols=70 Identities=17% Similarity=0.235 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHH
Q 045448 513 GIEQVKRENQSLVELNSSSTITIQNLQNEIFNLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIMGLSRRYQ 585 (1756)
Q Consensus 513 ~~~~~~ee~~~L~eln~sS~~~i~~L~~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln~~~~ 585 (1756)
--..++..+..|...---|+..+..|+--++..+. .+...|..-.....-...++..+..|+.+|..+|-
T Consensus 39 k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~---~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~Gk~~ 108 (112)
T 1x79_B 39 SSEDSSHQISALVLRAQASEILLEELQQGLSQAKR---DVQEQMAVLMQSREQVSEELVRLQKDNDSLQGKHS 108 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhh
Confidence 34455666777777766677777777766655544 33443443345666666777777778877777653
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=55.15 E-value=2.5e+02 Score=33.84 Aligned_cols=61 Identities=13% Similarity=0.027 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 380 KIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQK 447 (1756)
Q Consensus 380 kIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eK 447 (1756)
.+...|....+.|....+.+...+....+++.+++ ++..++.+++++...|......+..+
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
T 3oja_A 415 IVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAE-------ENARLKKLNGEADLALASANATLQEL 475 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHH-------HhhhhhhhhhhhhhhhHhcccHHHHH
Confidence 33444444444555555555555555555555555 66666666666666666666655443
No 62
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=55.14 E-value=34 Score=33.50 Aligned_cols=33 Identities=24% Similarity=0.282 Sum_probs=22.7
Q ss_pred HhhhcccccchhhhHHHHHHHhhHHHHHHhhhh
Q 045448 650 LSEMNIKLEGSGERVNDLQKSCQFLREEKSSLV 682 (1756)
Q Consensus 650 ls~~~~ele~lr~~vk~Lqe~~~~Lke~~s~~~ 682 (1756)
+..||.-+-++=++|+.|+..|..|...+..+.
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELEQLK 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555677788888888888877665544
No 63
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=53.43 E-value=1.5e+02 Score=35.47 Aligned_cols=40 Identities=18% Similarity=0.198 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 045448 265 CLERISTLEKMIIQAQEDSKGLNERASKAEIEAQKLKQEL 304 (1756)
Q Consensus 265 ~lErLS~LE~~Ls~AQeelk~L~ERa~kAE~Ele~LKqeL 304 (1756)
+...-.-|+.+|..+++....+..++..+---+-.|...|
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (471)
T 3mq9_A 395 ARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASL 434 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHH
Confidence 3334444666667666666666666666655555555443
No 64
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=53.38 E-value=28 Score=33.27 Aligned_cols=73 Identities=25% Similarity=0.316 Sum_probs=52.3
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHhHHHHHHHHHHHhHhhhcccccchhhhHHHHHHHh
Q 045448 596 LNPEHLGSAVKELQEENSKLKEVCKEQGDEKEVLHEKLKNMDNLLKKNAALEGSLSEMNIKLEGSGERVNDLQKSC 671 (1756)
Q Consensus 596 l~~~s~~~~i~~Lq~en~kLkE~~~~~~~Ek~~l~ekl~~~e~L~~k~~~le~sls~~~~ele~lr~~vk~Lqe~~ 671 (1756)
.+|.-++..|..|=.+|+.|.++...+..-++.|..+++ .|.-++..|...+.++..-..-+..++++|+++.
T Consensus 2 ~~~~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvd---ELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 2 MDPEFMGREVENLILENTQLLETKNALNIVKNDLIAKVD---ELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677889999999999999999999998888876665 5666777777777776666666777777776654
No 65
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=52.73 E-value=1.8e+02 Score=28.63 Aligned_cols=66 Identities=8% Similarity=0.120 Sum_probs=35.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhhhHHHHH
Q 045448 422 ANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQDEQSRFAQVEVTLQTLQKLHSQSQHEQK 487 (1756)
Q Consensus 422 ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~IqdE~~K~~q~E~al~~Le~l~sqsQeE~~ 487 (1756)
++..+..+-..+...|..+..+......+-...|..-..=+..+++.+.-+.++++.+.-.+--++
T Consensus 26 eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLd 91 (96)
T 3q8t_A 26 ELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLD 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444445555555555555555556665555555556666666666665554443333
No 66
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=50.96 E-value=1.7e+02 Score=36.62 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=28.1
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhH
Q 045448 537 NLQNEIF-NLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIMGLSR 582 (1756)
Q Consensus 537 ~L~~Ei~-~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln~ 582 (1756)
+--.+|+ .|+..+.-|+.+|.-+|....+||.-|..+..+|+-|+-
T Consensus 106 NtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 106 NTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 555556666666666666666666666666666666654
No 67
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=50.58 E-value=1.5e+02 Score=28.39 Aligned_cols=77 Identities=16% Similarity=0.241 Sum_probs=57.1
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 782 EKESTLSQVEELRYSLTNEQLERANYVQSSESRMVDLESLVHQLQEETTLRKKEFEEELDKAVKAQVEIFILQKFIK 858 (1756)
Q Consensus 782 Eke~~~~qv~~L~~~L~~e~e~~~~~~~s~e~~l~~le~~i~~Lqee~~~~~~e~e~e~~k~~~aq~ei~ilq~~l~ 858 (1756)
|.+++..+...|..+|.-=...+...+...+..++.++..+..+..+....-.+|+.=++-=+.--+||-.-.+.|.
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLLE 78 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLE 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 45555555555655555555556666777788888899999999999988889998888876777788877777664
No 68
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=50.53 E-value=1.9e+02 Score=28.29 Aligned_cols=36 Identities=14% Similarity=0.220 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 424 HSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQ 459 (1756)
Q Consensus 424 e~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~Iq 459 (1756)
...+.++..+...+..+..++.....++..|...+.
T Consensus 67 ~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 67 SKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433
No 69
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=50.32 E-value=73 Score=32.70 Aligned_cols=62 Identities=18% Similarity=0.260 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 045448 297 AQKLKQELSRLENEKEAGLLQYKQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALT 361 (1756)
Q Consensus 297 le~LKqeL~~lEaEkEa~llQykQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~ 361 (1756)
++.|+.++..+..+.+... .+....|.+|...|..++..+.........+..|.+.|+.++.
T Consensus 17 Ie~Lkreie~lk~ele~l~---~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~ 78 (120)
T 3i00_A 17 IERLYREISGLKAQLENMK---TESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446666666666665554 3556677778888888888887777777777777777777763
No 70
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=49.11 E-value=1.1e+02 Score=30.74 Aligned_cols=78 Identities=15% Similarity=0.087 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 380 KIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQAS 457 (1756)
Q Consensus 380 kIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~ 457 (1756)
.++++|+++..|--....|-.+...+.=.+..++..+..+++.+..++.++...-..+..+.+..+..+.++..|+..
T Consensus 3 sL~EvEEKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~ 80 (103)
T 4h22_A 3 SLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEA 80 (103)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666655555555555555555555554333343444444444443333334444444444444444333
No 71
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=48.76 E-value=96 Score=30.37 Aligned_cols=73 Identities=23% Similarity=0.327 Sum_probs=35.2
Q ss_pred HHHhHHHHHHHHHHHhhHHhhhhhhhhhhHHHHHHHHh-----HHHHHHHHHhhhhhhhhhHHHHHhhHHHHHHHHHH
Q 045448 692 LQIMTENMQKLLEKNVTLEHSLAGANVELEGLRAKSKS-----LEDFCRMLKNEKSNLLNERSTLVSQLEDVEKRLGN 764 (1756)
Q Consensus 692 lq~~~~~m~kLlEkns~LE~SLSd~n~ELe~lR~K~K~-----lEEscq~l~~ekS~L~~Ek~~L~SQL~~~t~~l~~ 764 (1756)
+|.+...+..-++|.-+||..=..+-+++..++.+-.. ++....-|+..--.+..||+.|..++.++...+..
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~ 88 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMR 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666677666666655555555555443221 23333333334444444444444444444443333
No 72
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=47.62 E-value=50 Score=31.76 Aligned_cols=63 Identities=22% Similarity=0.256 Sum_probs=48.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHhhhhhhhhHHHHhHHHhhHHHH
Q 045448 1167 EAEQKLKATHNLNVELCITVEDLKRECDELKLIKENAEKRILEISRDCSKQERELECLQEVNKSLE 1232 (1756)
Q Consensus 1167 e~~~~~~~~~~~~~el~~~v~~l~~~~~e~~~~~~~~e~~i~~ls~~~~~q~~ei~~l~e~n~~L~ 1232 (1756)
++-.|++++...|.+|-+.|.+|+...++++.=++.+...+..+-+.-+. -|.-|++....|-
T Consensus 10 ~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~---KI~eL~elRqgLa 72 (79)
T 3cvf_A 10 ETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDV---SLFELSELREGLA 72 (79)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHH
Confidence 34578999999999999999999999999998888887777777665553 4445555554443
No 73
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=47.36 E-value=2.5e+02 Score=28.69 Aligned_cols=42 Identities=19% Similarity=0.154 Sum_probs=28.7
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 045448 457 SLQDEQSRFAQVEVTLQTLQKLHSQSQHEQKALTLELQNKLQ 498 (1756)
Q Consensus 457 ~IqdE~~K~~q~E~al~~Le~l~sqsQeE~~~La~El~~~~~ 498 (1756)
.|..=..+...+|..|..|...+++++..+..=..+|.....
T Consensus 46 qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re 87 (112)
T 1x79_B 46 QISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSRE 87 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556678999999999999998877665555544433
No 74
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=46.75 E-value=25 Score=30.13 Aligned_cols=36 Identities=33% Similarity=0.331 Sum_probs=31.2
Q ss_pred ccchhhhHHHHHHHhhHHHHHHhhhhHHHHHHHHHH
Q 045448 657 LEGSGERVNDLQKSCQFLREEKSSLVAEKATLLSQL 692 (1756)
Q Consensus 657 le~lr~~vk~Lqe~~~~Lke~~s~~~sEK~aL~~ql 692 (1756)
+..|..++|+|+..+..|.+.+|++..|+.+|.--+
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 346788999999999999999999999999886543
No 75
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=46.35 E-value=2.6e+02 Score=28.70 Aligned_cols=83 Identities=16% Similarity=0.161 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 375 DQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENL 454 (1756)
Q Consensus 375 ~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~L 454 (1756)
+.|...-.-|+.+|..+++.+..-..+...-..-+.++.. -|+.+...-+..++.+...|..+.++|..+-.++++|
T Consensus 21 ~ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~---SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erl 97 (121)
T 3mq7_A 21 MEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMA---SLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERL 97 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666778888888877776666555555555555554 2333333335567778888888888888888888887
Q ss_pred HHHHHH
Q 045448 455 QASLQD 460 (1756)
Q Consensus 455 qs~Iqd 460 (1756)
....+.
T Consensus 98 r~~~~~ 103 (121)
T 3mq7_A 98 RRENQV 103 (121)
T ss_dssp HHHHHH
T ss_pred Hhhchh
Confidence 776654
No 76
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=45.78 E-value=20 Score=45.06 Aligned_cols=80 Identities=18% Similarity=0.201 Sum_probs=1.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 381 IAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQVEAESLVQKIAIKDQELSQKQRELENLQASLQD 460 (1756)
Q Consensus 381 IseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq~Ele~l~eKIs~lerEL~eKqeE~e~Lqs~Iqd 460 (1756)
+..|+.+...++++...|..+-..+......++.....-.++...|..++......+..+..+...+-.|...++..+..
T Consensus 365 ~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 444 (575)
T 2i1j_A 365 ILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVED 444 (575)
T ss_dssp -----------------------------------------------------------------------------CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445444444444444443333333332222333455555555556666666666666666666666554443
No 77
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=43.88 E-value=3.5e+02 Score=32.40 Aligned_cols=24 Identities=13% Similarity=0.057 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHH
Q 045448 321 CLEMIYALESKISLAEENAGMLNE 344 (1756)
Q Consensus 321 ~lEkIseLEkKIs~lEe~v~slnq 344 (1756)
++++|+++.+.+..++.++..-|-
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~ 425 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQAATANH 425 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcch
Confidence 445556666555555555554433
No 78
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=43.66 E-value=98 Score=38.99 Aligned_cols=104 Identities=17% Similarity=0.280 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 045448 292 KAEIEAQKLKQELSRLENEKEAGLLQYKQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIA 371 (1756)
Q Consensus 292 kAE~Ele~LKqeL~~lEaEkEa~llQykQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~ 371 (1756)
.|+.+...+...|..++.+...+...+....+.+..|+.+...++.....+......++.+...|...
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~------------ 399 (575)
T 2i1j_A 332 RAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEET------------ 399 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------------------------------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 34444455556666655554444433444445555555555555555554444444444444444333
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 372 FRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKL 409 (1756)
Q Consensus 372 l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kl 409 (1756)
....-+.=..|+.++..++..+.++..+.+.-..+-
T Consensus 400 --~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~ 435 (575)
T 2i1j_A 400 --KNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSET 435 (575)
T ss_dssp --------------------------------------
T ss_pred --HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334455555555555555555554444333
No 79
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=43.38 E-value=81 Score=30.46 Aligned_cols=60 Identities=20% Similarity=0.228 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHH
Q 045448 484 HEQKALTLELQNKLQKMKDMEVCNHDLEEGIEQVKRENQSLVELNSSSTITIQNLQNEIF 543 (1756)
Q Consensus 484 eE~~~La~El~~~~~~L~~lE~~k~~l~~~~~~~~ee~~~L~eln~sS~~~i~~L~~Ei~ 543 (1756)
-.+..|.+|+...--++.+|++-+.--+-.+-..++++..|+.+=-.....|+.||.++.
T Consensus 19 ~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 19 RKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 345578899999999999999888877777777777777777776666667777776654
No 80
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=42.73 E-value=2.2e+02 Score=28.21 Aligned_cols=19 Identities=0% Similarity=0.039 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 045448 379 DKIAQMESEIFNAQEHAKQ 397 (1756)
Q Consensus 379 ekIseLE~ELseaeeev~r 397 (1756)
++|..|.-.+.-+..+...
T Consensus 40 E~i~vLk~Qv~IY~~DF~a 58 (94)
T 3jsv_C 40 ETVPVLKAQADIYKADFQA 58 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555444444433
No 81
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=42.71 E-value=57 Score=31.10 Aligned_cols=57 Identities=7% Similarity=0.030 Sum_probs=41.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhHHH
Q 045448 371 AFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCVLLERANHSLQ 427 (1756)
Q Consensus 371 ~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~~Le~ele~Lq 427 (1756)
.+.....-.||..||.++...+..++.||..+-.-...+..+..++..|-..+.++.
T Consensus 6 ~~~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 6 SPRDQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344456677899999999999999999999988888888777776666665555444
No 82
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=41.90 E-value=1.1e+02 Score=29.57 Aligned_cols=57 Identities=18% Similarity=0.266 Sum_probs=43.2
Q ss_pred HHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 803 ERANYVQSSESRMVDLESLVHQLQEETTLRKKEFEEELDKAVKAQVEIFILQKFIKD 859 (1756)
Q Consensus 803 ~~~~~~~s~e~~l~~le~~i~~Lqee~~~~~~e~e~e~~k~~~aq~ei~ilq~~l~d 859 (1756)
-+...+......+..++..+..+..+....-++|+.=++-=+.--+||-.-.+.|..
T Consensus 25 ~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLEG 81 (86)
T 1x8y_A 25 SLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEG 81 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence 344455566677778888888888888888889988888777777888877777753
No 83
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=41.65 E-value=37 Score=30.11 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=40.4
Q ss_pred HHhhhhchhhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHhHHH
Q 045448 975 GQLRLDGAEQESGKKIFEQELMSRTEQHMMLQKDKDELLEMNKQL 1019 (1756)
Q Consensus 975 ~q~~~e~~~l~~ek~~l~~e~~~~~~q~~~Lq~~~~~lle~n~ql 1019 (1756)
.||...++.|..|.+.|.+|++.-+.++.-|.++.-.+-++=.+|
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~l 50 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence 578888999999999999999999999999999998887776655
No 84
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=41.03 E-value=2.2e+02 Score=34.65 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=30.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045448 371 AFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQQCV 417 (1756)
Q Consensus 371 ~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe~~~ 417 (1756)
...++.+++.|..+|..+...+..++.|...+.....++..++..+.
T Consensus 83 tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~ 129 (409)
T 1m1j_C 83 TQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIA 129 (409)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55666777777777777777777776666666655555555554333
No 85
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=38.76 E-value=3.1e+02 Score=27.37 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 373 RYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQ 414 (1756)
Q Consensus 373 ~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe 414 (1756)
.|....+.|..++.++.....++.+|...+..-...-..++.
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~ 47 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEE 47 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555666666666666666666555555444433333333
No 86
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=35.36 E-value=2.4e+02 Score=28.96 Aligned_cols=65 Identities=15% Similarity=0.257 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 345 QTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTS 412 (1756)
Q Consensus 345 rierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~l 412 (1756)
.|+.+..+++.|+.++..+--|--..+.+ +..+|..|+.++.+..........+.+.+..++..+
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~q---l~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRVVLQ---LKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554443333333333 345556666666666555444444444444444433
No 87
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=34.84 E-value=3.8e+02 Score=27.27 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045448 321 CLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQAL 360 (1756)
Q Consensus 321 ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL 360 (1756)
..+.|.-|..++.....+...--.--+++..++..|...+
T Consensus 60 ~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql 99 (110)
T 2v4h_A 60 VMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQL 99 (110)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHH
Confidence 3355555555555555555554444445555555555444
No 88
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=34.02 E-value=1e+02 Score=29.42 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q 045448 320 QCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGL 363 (1756)
Q Consensus 320 Q~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~L 363 (1756)
.+.++|.+||.+++..+..+..+|..+-+-..+++.|+..+..|
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L 54 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHL 54 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999988888888888888887333
No 89
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=31.71 E-value=1.4e+02 Score=28.57 Aligned_cols=48 Identities=25% Similarity=0.240 Sum_probs=40.1
Q ss_pred ccccchhhhHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhHHHHHHH
Q 045448 655 IKLEGSGERVNDLQKSCQFLREEKSSLVAEKATLLSQLQIMTENMQKL 702 (1756)
Q Consensus 655 ~ele~lr~~vk~Lqe~~~~Lke~~s~~~sEK~aL~~qlq~~~~~m~kL 702 (1756)
.+|.|.+..|-.|-.+|..|.+++..+.-=|+.|+.++..+|..-+-|
T Consensus 2 ~~~~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l 49 (77)
T 2w83_C 2 MDPEFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVL 49 (77)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 367889999999999999999999999999999999986665443333
No 90
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=31.02 E-value=1.5e+02 Score=27.97 Aligned_cols=56 Identities=21% Similarity=0.297 Sum_probs=47.2
Q ss_pred hhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 807 YVQSSESRMVDLESLVHQLQEETTLRKKEFEEELDKAVKAQVEIFILQKFIKDLEE 862 (1756)
Q Consensus 807 ~~~s~e~~l~~le~~i~~Lqee~~~~~~e~e~e~~k~~~aq~ei~ilq~~l~d~ee 862 (1756)
.+......|...+..|+.|++...-.-+.+|.=-|.++.+-||--+||.-+.++.+
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 45566777888899999999999999999999999999999999999999988753
No 91
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=29.28 E-value=6.2e+02 Score=31.35 Aligned_cols=48 Identities=19% Similarity=0.114 Sum_probs=25.4
Q ss_pred HHHHHHhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 367 KEAIAFRYDQCLDKIAQMES--EIFNAQEHAKQLNSEILMGAEKLRTSEQ 414 (1756)
Q Consensus 367 Keal~l~y~q~lekIseLE~--ELseaeeev~rLn~EiE~l~~kle~lEe 414 (1756)
++.++-+|+.+++.+-..+. -+......++.|..-++....++..++.
T Consensus 135 n~~~~~~s~~mle~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~~ 184 (461)
T 3ghg_B 135 NENVVNEYSSELEKHQLYIDETVNSNIPTNLRVLRSILENLRSKIQKLES 184 (461)
T ss_dssp HHHTTSCHHHHHHHHHTHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777777766666 2223444444444444444444443333
No 92
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=28.89 E-value=4.6e+02 Score=26.33 Aligned_cols=50 Identities=12% Similarity=0.276 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 045448 323 EMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAF 372 (1756)
Q Consensus 323 EkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l 372 (1756)
..+..+-..|..-...+..++..++....+-..+...+..+..+|+.+..
T Consensus 54 ~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L~~ 103 (107)
T 2no2_A 54 EVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSLVS 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555555555555556666666666666666666666666665543
No 93
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=27.09 E-value=1.1e+02 Score=26.21 Aligned_cols=34 Identities=24% Similarity=0.466 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhHHhHhhhhhHHHHhHhHHHH
Q 045448 757 DVEKRLGNLERRFTKLEEKYADIEREKESTLSQV 790 (1756)
Q Consensus 757 ~~t~~l~~Le~k~t~LE~~~s~~~~Eke~~~~qv 790 (1756)
....+-+.|+.++++||.+.|-+..|.-.++.-+
T Consensus 7 eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 4456778888999999999999999887766543
No 94
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=26.48 E-value=4.6e+02 Score=25.55 Aligned_cols=32 Identities=19% Similarity=0.297 Sum_probs=13.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q 045448 332 ISLAEENAGMLNEQTEKAETEVKALKQALTGL 363 (1756)
Q Consensus 332 Is~lEe~v~slnqrierle~Ei~~LkqEL~~L 363 (1756)
+..+...+..+......++.++..+.+.+.-+
T Consensus 12 ~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 12 KTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333334444444444444444444333
No 95
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=25.86 E-value=2.6e+02 Score=28.35 Aligned_cols=41 Identities=24% Similarity=0.342 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHhHHHHHHHHH
Q 045448 606 KELQEENSKLKEVCKEQGDEKEVLHEKLKNMDNLLKKNAAL 646 (1756)
Q Consensus 606 ~~Lq~en~kLkE~~~~~~~Ek~~l~ekl~~~e~L~~k~~~l 646 (1756)
..|..++..|+..+...+.|+.-+..||++|+-|-..+..+
T Consensus 21 ~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~~~~ 61 (106)
T 4e61_A 21 GSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTTQDL 61 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445566788888888999999999999999998887554
No 96
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=25.09 E-value=6e+02 Score=30.90 Aligned_cols=46 Identities=24% Similarity=0.275 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Q 045448 318 YKQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALTGL 363 (1756)
Q Consensus 318 ykQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~~L 363 (1756)
.+.++++|..|+..|...+..+..+...+..+...+..|++.|..|
T Consensus 86 skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 86 SKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQL 131 (409)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3456677777777777777777777776666666666666665443
No 97
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=24.46 E-value=1.4e+02 Score=35.18 Aligned_cols=45 Identities=9% Similarity=0.059 Sum_probs=21.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 370 IAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILMGAEKLRTSEQ 414 (1756)
Q Consensus 370 l~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~l~~kle~lEe 414 (1756)
++..++.++++|..+|..+......+..|...+.....++..++.
T Consensus 3 ~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~ 47 (323)
T 1lwu_C 3 GQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQ 47 (323)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555444444333333333
No 98
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=24.22 E-value=3.2e+02 Score=31.08 Aligned_cols=57 Identities=14% Similarity=0.241 Sum_probs=36.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhcHHHHHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 045448 230 LDERASKADIEVKVLKEALIRLEAERDAGLLQYNHCLERISTLEKMIIQAQEDSKGLNERASKA 293 (1756)
Q Consensus 230 L~eRA~kAE~EIqsLKetLakLEsekdasllQyqq~lErLS~LE~~Ls~AQeelk~L~ERa~kA 293 (1756)
+..|-+++..||..+-..|+.|+.. .+...+||+.++..=..+..++..+.+|+.-+
T Consensus 168 L~IRK~ma~sEI~EID~KI~~L~~m-------R~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~ 224 (242)
T 3uux_B 168 LNIQKNSTLSEIRDIEVEVENLRQK-------KEKLLGKIANIEQNQLLLEDNLKQIDDRLDFL 224 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777777777766 55666677777766666666666666664433
No 99
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=23.85 E-value=2.9e+02 Score=26.82 Aligned_cols=61 Identities=11% Similarity=0.179 Sum_probs=34.0
Q ss_pred HHHHhhhhcHHHHHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 250 RLEAERDAGLLQYNHCLERISTLEKMIIQAQEDSKGLNERASKAEIEAQKLKQELSRLENE 310 (1756)
Q Consensus 250 kLEsekdasllQyqq~lErLS~LE~~Ls~AQeelk~L~ERa~kAE~Ele~LKqeL~~lEaE 310 (1756)
.||+--++.+...+...++|+......-.++..+.....+......+++.++.++..+.++
T Consensus 14 eLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~ 74 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQAE 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4444445555556666666666666555555555554445555555666666666655443
No 100
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=23.50 E-value=1e+03 Score=28.72 Aligned_cols=35 Identities=11% Similarity=0.093 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 045448 326 YALESKISLAEENAGMLNEQTEKAETEVKALKQAL 360 (1756)
Q Consensus 326 seLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL 360 (1756)
.+|+.+|..++..|..+-..+..|+..++.+..+|
T Consensus 116 ~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~ki 150 (390)
T 1deq_A 116 EDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDM 150 (390)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45666777777777766666666666666555555
No 101
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=23.48 E-value=3e+02 Score=24.60 Aligned_cols=47 Identities=19% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 330 SKISLAEENAGMLNEQTEKAETEVKALKQALTGLNEEKEAIAFRYDQCLDKIAQMESEIFNAQEHAKQLNSEILM 404 (1756)
Q Consensus 330 kKIs~lEe~v~slnqrierle~Ei~~LkqEL~~LeeEKeal~l~y~q~lekIseLE~ELseaeeev~rLn~EiE~ 404 (1756)
.+|..+-.+++.++..+..+..++..++..+ ..+.++..|-|.+++.
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v----------------------------~~ak~eA~RAN~RlDN 50 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDA----------------------------QAAKDDAARANQRADN 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHhhhc
No 102
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=23.14 E-value=1.1e+03 Score=29.02 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=11.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 045448 422 ANHSLQVEAESLVQKIAIKDQELS 445 (1756)
Q Consensus 422 ele~Lq~Ele~l~eKIs~lerEL~ 445 (1756)
.+..|+..++.+..+|+.++..+.
T Consensus 169 ~i~~L~~~~~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 169 SLRVLRAVIDSLHKKIQKLENAIA 192 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444445555555544443
No 103
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=22.89 E-value=3.2e+02 Score=24.41 Aligned_cols=44 Identities=27% Similarity=0.280 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 045448 318 YKQCLEMIYALESKISLAEENAGMLNEQTEKAETEVKALKQALT 361 (1756)
Q Consensus 318 ykQ~lEkIseLEkKIs~lEe~v~slnqrierle~Ei~~LkqEL~ 361 (1756)
|-|+..++-.|..+=+.+...++....++.++++|+..++.-+.
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk 48 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLK 48 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHH
Confidence 67888888888888888888888889999999999888876663
No 104
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=22.73 E-value=65 Score=26.40 Aligned_cols=28 Identities=43% Similarity=0.544 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHhhhhcccccchhhhHHHHHHHhhhhhhhhhhhhhhccc
Q 045448 1287 LENKVHELAEVCESLEDGSATKSLESKQMKERIGSLESEIGRLKSRLSS 1335 (1756)
Q Consensus 1287 ~e~kv~El~~~c~~le~~~~~k~~~i~~lkerv~~lE~En~~Lk~~Lsa 1335 (1756)
+|.||-||+. +-+.|+.|+.|||.-|..
T Consensus 5 LE~kVEeLl~---------------------~n~~Le~EV~RLk~Ll~~ 32 (33)
T 3m48_A 5 LEAKVEELLS---------------------KNWNLENEVARLKKLVGE 32 (33)
T ss_dssp HHHHHHHHHH---------------------HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH---------------------HhHHHHHHHHHHHHHhhc
No 105
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=21.80 E-value=88 Score=24.55 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=19.8
Q ss_pred HHHHHHHhHHHHhhhHHHHHHHHHH
Q 045448 410 RTSEQQCVLLERANHSLQVEAESLV 434 (1756)
Q Consensus 410 e~lEe~~~~Le~ele~Lq~Ele~l~ 434 (1756)
+.+++.|+.|++.++.++..++.+.
T Consensus 4 ealekkcaalesklqalekkleale 28 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999888888777654
No 106
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=21.68 E-value=43 Score=29.91 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=26.0
Q ss_pred chhhhHHHHHHHhhhhhhhhhhhhhhcccc
Q 045448 1307 TKSLESKQMKERIGSLESEIGRLKSRLSSY 1336 (1756)
Q Consensus 1307 ~k~~~i~~lkerv~~lE~En~~Lk~~Lsay 1336 (1756)
.|..|++.|-.+|..|+.||..|+.+++..
T Consensus 19 RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L 48 (55)
T 1dh3_A 19 KKKEYVKSLENRVAVLENQNKTLIEELKAL 48 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999887643
No 107
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=21.53 E-value=5.7e+02 Score=24.86 Aligned_cols=94 Identities=13% Similarity=0.179 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHhhhc---------------ccHHHHHHHHHHHHH
Q 045448 480 SQSQHEQKALTLELQNKLQKMKDMEVCNHDLEEGIEQVKRENQSLVELNS---------------SSTITIQNLQNEIFN 544 (1756)
Q Consensus 480 sqsQeE~~~La~El~~~~~~L~~lE~~k~~l~~~~~~~~ee~~~L~eln~---------------sS~~~i~~L~~Ei~~ 544 (1756)
++.+.++..+...+...++.+..+......++..+.++......|..+.. .-...+..|...+..
T Consensus 2 ~~~~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ 81 (117)
T 2zqm_A 2 QNIPPQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIET 81 (117)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 045448 545 LKEMKEKLEKEIALQEDKSNALQLEVRHL 573 (1756)
Q Consensus 545 lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~ 573 (1756)
+...+..|+......-.....|+..++..
T Consensus 82 ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 82 LEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 108
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=21.50 E-value=56 Score=29.38 Aligned_cols=40 Identities=20% Similarity=0.306 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHhhhhhhhhhhhhhhcccchhHHHhhhhhH
Q 045448 1308 KSLESKQMKERIGSLESEIGRLKSRLSSYDPVIASLKDNI 1347 (1756)
Q Consensus 1308 k~~~i~~lkerv~~lE~En~~Lk~~Lsay~p~i~sL~~~v 1347 (1756)
|..+++.|..+|..|+.+|..|..+++..-.-+..|+.-+
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 109
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=21.48 E-value=3.2e+02 Score=29.01 Aligned_cols=72 Identities=22% Similarity=0.234 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045448 487 KALTLELQNKLQKMKDMEVCNHDLEEGIEQVKRENQSLVELNSSSTITIQNLQNEIFNLKEMKEKLEKEIAL 558 (1756)
Q Consensus 487 ~~La~El~~~~~~L~~lE~~k~~l~~~~~~~~ee~~~L~eln~sS~~~i~~L~~Ei~~lke~~~~LE~Ev~~ 558 (1756)
..|..++......++.++.-...+......+..+.+.|.+.+.-|..+-++|...+...++....||.++.-
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDLeASReAKKqlEadl~~ 140 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLDASREAKKQVEKDLLE 140 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC---------------------------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555556666666666666666888888888888888889999999999999998888876653
No 110
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=21.11 E-value=2.8e+02 Score=26.28 Aligned_cols=50 Identities=24% Similarity=0.230 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHH
Q 045448 534 TIQNLQNEIFNLKEMKEKLEKEIALQEDKSNALQLEVRHLKEEIMGLSRR 583 (1756)
Q Consensus 534 ~i~~L~~Ei~~lke~~~~LE~Ev~~~v~~~~~LQ~Ei~~~KeE~~~Ln~~ 583 (1756)
++..|+.++......+..|+..+.+.-.-...|-.||-.+.=|+.-|+.+
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~r 68 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQK 68 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHH
Confidence 55666666666666666666555544444444444444444444444443
No 111
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=20.63 E-value=2e+02 Score=26.44 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=24.1
Q ss_pred HHHhhhhhhhHHHHHHhHHHhh-----HHHHHHHHHHhhHH
Q 045448 1000 EQHMMLQKDKDELLEMNKQLML-----EEAYLTLQEENSKL 1035 (1756)
Q Consensus 1000 ~q~~~Lq~~~~~lle~n~ql~~-----~~s~~~lq~e~~~~ 1035 (1756)
.-+..-....++|++.|..|.. |.-.+.||.||+.+
T Consensus 20 ~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 20 KALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 3455566778888888876655 66666666666553
No 112
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=20.31 E-value=1.5e+02 Score=27.92 Aligned_cols=41 Identities=24% Similarity=0.283 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhHHhHhhhhhHHHHhHhHHHHHHHHHHHH
Q 045448 758 VEKRLGNLERRFTKLEEKYADIEREKESTLSQVEELRYSLT 798 (1756)
Q Consensus 758 ~t~~l~~Le~k~t~LE~~~s~~~~Eke~~~~qv~~L~~~L~ 798 (1756)
-...++.|+.+...|+..+.+++.|.+.+..++..|...+.
T Consensus 27 K~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 27 KEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678889999999999999999999999999888876653
Done!