BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045450
         (112 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
           Beta-Galactosidase
 pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
           Reesei With Galactose
 pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
           Reesei With Iptg
 pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
           Reesei With Petg
          Length = 1003

 Score = 26.6 bits (57), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 23/37 (62%)

Query: 18  TAKAMVFDQISQTIQSTSNLLHLMQQSSPSQVQLTKL 54
           TAKA   +  + TI +TSNL  ++Q ++ S  Q+ +L
Sbjct: 506 TAKAKKIEGSNVTIHTTSNLTVVLQWTASSARQVVQL 542


>pdb|3CWZ|B Chain B, Strucure Of Rab6(Gtp)-R6ip1 Complex
          Length = 384

 Score = 25.4 bits (54), Expect = 8.1,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 9/55 (16%)

Query: 48  QVQLTKLPKNLLAKTTMIKNTGQ---VCIRADASGYFLPRCTCGEWITKCSSSQN 99
           + Q+ ++P+N+L  T   +N G+   V I  D SG +       +W+ +C   +N
Sbjct: 279 ETQILQIPRNVLEMTFECQNLGKLTTVQIGHDNSGLY------AKWLVECVMVRN 327


>pdb|1RR2|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit
          Bound To 2- Ketobutyric Acid
          Length = 473

 Score = 25.4 bits (54), Expect = 8.5,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 41 MQQSSPSQVQLTKL-----PKNLLAKTTMIKNTGQVCIRADASGYFLPRCTCGEWITKC 94
          ++ S P +V +T+L      ++L+A    +++    C   DA+GY+   C  G     C
Sbjct: 4  IEVSEPREVGITELVLRDAHQSLMATRMAMEDMVGACADIDAAGYWSVECWGGATYDSC 62


>pdb|1RQH|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit
          Bound To Pyruvic Acid
          Length = 472

 Score = 25.4 bits (54), Expect = 8.5,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 41 MQQSSPSQVQLTKL-----PKNLLAKTTMIKNTGQVCIRADASGYFLPRCTCGEWITKC 94
          ++ S P +V +T+L      ++L+A    +++    C   DA+GY+   C  G     C
Sbjct: 3  IEVSEPREVGITELVLRDAHQSLMATRMAMEDMVGACADIDAAGYWSVECWGGATYDSC 61


>pdb|1U5J|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit,
          Met186ile
          Length = 539

 Score = 25.4 bits (54), Expect = 9.0,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 41 MQQSSPSQVQLTKL-----PKNLLAKTTMIKNTGQVCIRADASGYFLPRCTCGEWITKC 94
          ++ S P +V +T+L      ++L+A    +++    C   DA+GY+   C  G     C
Sbjct: 17 IEVSEPREVGITELVLRDAHQSLMATRMAMEDMVGACADIDAAGYWSVECWGGATYDSC 75


>pdb|1RQE|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit
          Bound To Oxaloacetate
          Length = 539

 Score = 25.4 bits (54), Expect = 9.2,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 41 MQQSSPSQVQLTKL-----PKNLLAKTTMIKNTGQVCIRADASGYFLPRCTCGEWITKC 94
          ++ S P +V +T+L      ++L+A    +++    C   DA+GY+   C  G     C
Sbjct: 17 IEVSEPREVGITELVLRDAHQSLMATRMAMEDMVGACADIDAAGYWSVECWGGATYDSC 75


>pdb|1S3H|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit
          A59t
          Length = 539

 Score = 25.4 bits (54), Expect = 9.4,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 41 MQQSSPSQVQLTKL-----PKNLLAKTTMIKNTGQVCIRADASGYFLPRCTCGEWITKC 94
          ++ S P +V +T+L      ++L+A    +++    C   DA+GY+   C  G     C
Sbjct: 17 IEVSEPREVGITELVLRDAHQSLMATRMAMEDMVGACADIDAAGYWSVECWGGTTYDSC 75


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.127    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,490,760
Number of Sequences: 62578
Number of extensions: 73936
Number of successful extensions: 160
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 157
Number of HSP's gapped (non-prelim): 12
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)