Query 045450
Match_columns 112
No_of_seqs 14 out of 16
Neff 1.6
Searched_HMMs 46136
Date Fri Mar 29 13:24:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045450.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045450hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00467 GS GS motif. Aa app 37.7 21 0.00046 21.0 1.2 20 8-27 11-30 (30)
2 PF07862 Nif11: Nitrogen fixat 31.7 28 0.00062 20.4 1.1 28 56-83 17-44 (49)
3 PF08091 Toxin_21: Spider inse 31.0 21 0.00046 22.5 0.5 17 91-107 5-21 (39)
4 KOG2827 Uncharacterized conser 30.5 17 0.00036 31.2 -0.0 12 50-61 310-321 (322)
5 smart00808 FABD F-actin bindin 28.0 76 0.0016 23.9 3.1 29 11-39 97-125 (126)
6 PF05166 YcgL: YcgL domain; I 27.6 20 0.00044 24.5 -0.0 16 67-82 54-69 (74)
7 PF02420 AFP: Insect antifreez 24.7 44 0.00096 16.1 0.9 10 94-103 2-11 (12)
8 PF05501 DUF755: Domain of unk 22.2 2.2E+02 0.0048 20.6 4.5 30 15-44 32-61 (123)
9 KOG3116 Predicted C3H1-type Zn 22.0 32 0.00069 27.4 0.2 23 74-96 20-45 (177)
10 PF01666 DX: DX module; Inter 21.0 41 0.0009 22.6 0.5 27 72-103 33-59 (76)
11 COG1198 PriA Primosomal protei 20.6 39 0.00085 31.0 0.4 42 54-95 405-448 (730)
12 PF11193 DUF2812: Protein of u 20.3 49 0.0011 21.8 0.8 28 67-94 5-32 (115)
13 PF14620 YPEB: YpeB sporulatio 20.0 53 0.0011 27.1 1.0 36 37-76 61-96 (361)
No 1
>smart00467 GS GS motif. Aa approx. 30 amino acid motif that precedes the kinase domain in types I and II TGF beta receptors. Mutation of two or more of the serines or threonines in the TTSGSGSG of TGF-beta type I receptor impairs phosphorylation and signaling activity.
Probab=37.69 E-value=21 Score=21.03 Aligned_cols=20 Identities=35% Similarity=0.237 Sum_probs=14.5
Q ss_pred CCCCCCCCCchhhHHHHHHH
Q 045450 8 ASGSSSSREGTAKAMVFDQI 27 (112)
Q Consensus 8 ~~~sa~g~~~taka~VAeqI 27 (112)
++||.+|..--.+-+||.||
T Consensus 11 tSGSGSG~p~LvqRTiarqi 30 (30)
T smart00467 11 TSGSGSGLPLLVQRTVARQI 30 (30)
T ss_pred cCCCCCCchhHHHHHHhhhC
Confidence 45666666667888898876
No 2
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=31.74 E-value=28 Score=20.38 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=22.4
Q ss_pred hhHhhhhhccchhhhhhhhccCCCcccc
Q 045450 56 KNLLAKTTMIKNTGQVCIRADASGYFLP 83 (112)
Q Consensus 56 KnLLaK~s~~KnT~qvl~qlpA~Gyfl~ 83 (112)
..|..+...++|.++++.-+-..||.+-
T Consensus 17 ~~l~~~l~~~~~~~e~~~lA~~~Gy~ft 44 (49)
T PF07862_consen 17 PELREQLKACQNPEEVVALAREAGYDFT 44 (49)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHcCCCCC
Confidence 4566677778899999999889999863
No 3
>PF08091 Toxin_21: Spider insecticidal peptide; InterPro: IPR012626 This family consists of insecticidal peptides isolated from venom of spiders of Aptostichus schlingeri (Trap-door spider) and Calisoga sp. Nine insecticidal peptides were isolated from the venom of the A. schlinger spider and seven of these toxins cause flaccid paralysis to insect larvae within 10 min of injection. However, all nine peptides were lethal within 24 hours [].; GO: 0009405 pathogenesis, 0005576 extracellular region
Probab=31.02 E-value=21 Score=22.54 Aligned_cols=17 Identities=35% Similarity=0.884 Sum_probs=14.1
Q ss_pred eeeecCCCCcccccccc
Q 045450 91 ITKCSSSQNCFPAACKY 107 (112)
Q Consensus 91 i~~cs~s~~c~~~~~ky 107 (112)
+.-|++|+||-++.|-|
T Consensus 5 ~~PC~ns~dCC~g~C~~ 21 (39)
T PF08091_consen 5 RYPCSNSKDCCSGNCGY 21 (39)
T ss_pred cccCCCchhhccCCccc
Confidence 45699999999998865
No 4
>KOG2827 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.54 E-value=17 Score=31.22 Aligned_cols=12 Identities=75% Similarity=1.005 Sum_probs=10.4
Q ss_pred hccccchhHhhh
Q 045450 50 QLTKLPKNLLAK 61 (112)
Q Consensus 50 ~L~kLPKnLLaK 61 (112)
+|-|||||||+|
T Consensus 310 ~~~~~pk~~l~~ 321 (322)
T KOG2827|consen 310 PLDKLPKKLLAK 321 (322)
T ss_pred ChhhhhHhhccC
Confidence 478999999987
No 5
>smart00808 FABD F-actin binding domain (FABD). FABD is the F-actin binding domain of Bcr-Abl and its cellular counterpart c-Abl. The Bcr-Abl tyrosine kinase causes different forms of leukemia in humans. Depending on its position within the cell, Bcr-Abl differentially affects cellular growth. The FABD forms a compact left-handed four-helix bundle in solution.
Probab=28.03 E-value=76 Score=23.89 Aligned_cols=29 Identities=17% Similarity=0.387 Sum_probs=23.6
Q ss_pred CCCCCCchhhHHHHHHHHHHHhhhhHHHH
Q 045450 11 SSSSREGTAKAMVFDQISQTIQSTSNLLH 39 (112)
Q Consensus 11 sa~g~~~taka~VAeqIsQavqSTSNLLh 39 (112)
++|+..+.+..-+..+.-++|+..||++|
T Consensus 97 sa~~~~~~~~~~~~~~l~~svkeIsdvVq 125 (126)
T smart00808 97 SAGSRNSPGATQDFSKLLSSVKEISDVVQ 125 (126)
T ss_pred hccCCCCcchHHHHHHHHHHHHHHHHHhh
Confidence 56666677777888889999999999876
No 6
>PF05166 YcgL: YcgL domain; InterPro: IPR007840 This family of proteins formerly called DUF709 includes the Escherichia coli gene ycgL. Homologues of YcgL are found in gammaproteobacteria. The structure of this protein shows a novel alpha/beta/alpha sandwich structure []. The proteins in this entry are functionally uncharacterised.; PDB: 2H7A_A.
Probab=27.55 E-value=20 Score=24.47 Aligned_cols=16 Identities=19% Similarity=0.553 Sum_probs=13.8
Q ss_pred hhhhhhhhccCCCccc
Q 045450 67 NTGQVCIRADASGYFL 82 (112)
Q Consensus 67 nT~qvl~qlpA~Gyfl 82 (112)
+.++|++.|..+||||
T Consensus 54 d~~~V~~~l~~~GfyL 69 (74)
T PF05166_consen 54 DAEKVLAALEEQGFYL 69 (74)
T ss_dssp -HHHHHHHHHHTSEEE
T ss_pred CHHHHHHHHHhCCEEE
Confidence 6788999999999997
No 7
>PF02420 AFP: Insect antifreeze protein repeat; InterPro: IPR003460 Antifreeze proteins (AFPs) are a class of proteins that are able to bind to and inhibit the growth of macromolecular ice, thereby permitting an organism to survive subzero temperatures by decreasing the probability of ice nucleation in their bodies []. These proteins have been characterised from a variety of organisms, including fish, plants, bacteria, fungi and arthropods. This entry represents insect AFPs of the type found in Tenebrio molitor (Yellow mealworm) and in Dendroides canadensis (Pyrochroid beetle). The structure of these AFPs consists of a right-handed beta-helix with 12 residues per coil. Each 12 residue-repeat contains two cys residues that form a disulphide bridge. The beta-helices of insect AFPs present a highly rigid array of threonine residues and bound water molecules that can effectively mimic the ice lattice. As such, beta-helical AFPs provide a more effective coverage of the ice surface compared to the alpha-helical fish AFPs []. A second insect antifreeze from Choristoneura fumiferana (Spruce budworm) (IPR007928 from INTERPRO) also consists of beta-helices, however in these proteins the helices form a left-handed twist; these proteins show no sequence homology to the current entry, but may act by a similar mechanism. The beta-helix motif may be used as an AFP structural motif in non-homologous proteins from other (non-fish) organisms as well.; PDB: 1EZG_B 1L1I_A.
Probab=24.65 E-value=44 Score=16.08 Aligned_cols=10 Identities=50% Similarity=0.976 Sum_probs=8.1
Q ss_pred ecCCCCcccc
Q 045450 94 CSSSQNCFPA 103 (112)
Q Consensus 94 cs~s~~c~~~ 103 (112)
|..|.||..+
T Consensus 2 CT~s~~C~~a 11 (12)
T PF02420_consen 2 CTGSTNCNNA 11 (12)
T ss_dssp EESSSTBTTS
T ss_pred cccCCCCcCC
Confidence 7788999875
No 8
>PF05501 DUF755: Domain of unknown function (DUF755) ; InterPro: IPR008474 This family is predominated by ORFs from Anelloviridae. The function of this family remains to be determined.
Probab=22.22 E-value=2.2e+02 Score=20.57 Aligned_cols=30 Identities=27% Similarity=0.276 Sum_probs=24.6
Q ss_pred CCchhhHHHHHHHHHHHhhhhHHHHHHhhc
Q 045450 15 REGTAKAMVFDQISQTIQSTSNLLHLMQQS 44 (112)
Q Consensus 15 ~~~taka~VAeqIsQavqSTSNLLhLMqqS 44 (112)
.|-+--+.++.|+.-.-+-|++|++|.+|-
T Consensus 32 ~GTsd~~~L~~qLlKEC~kt~~L~~l~~ql 61 (123)
T PF05501_consen 32 PGTSDVDSLQKQLLKECQKTSQLMQLLQQL 61 (123)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445778999999999999999999876
No 9
>KOG3116 consensus Predicted C3H1-type Zn-finger protein [General function prediction only]
Probab=22.05 E-value=32 Score=27.41 Aligned_cols=23 Identities=30% Similarity=0.745 Sum_probs=16.1
Q ss_pred hccCCCcccc--ccc-cccceeeecC
Q 045450 74 RADASGYFLP--RCT-CGEWITKCSS 96 (112)
Q Consensus 74 qlpA~Gyfl~--~ct-~~~Wi~~cs~ 96 (112)
|+.|+|.-+. +|+ +|||-.+|-.
T Consensus 20 qA~a~~~~~rCQKClq~GHWtYECk~ 45 (177)
T KOG3116|consen 20 QASAVGSSARCQKCLQAGHWTYECKN 45 (177)
T ss_pred hhhhcccchhHHHHHhhccceeeecC
Confidence 5556666554 565 7999999954
No 10
>PF01666 DX: DX module; InterPro: IPR002593 This domain has no known function. It is found in several Caenorhabditis elegans proteins. The domain contains 6 conserved cysteines that probably form three disulphide bridges.
Probab=20.97 E-value=41 Score=22.56 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=18.4
Q ss_pred hhhccCCCccccccccccceeeecCCCCcccc
Q 045450 72 CIRADASGYFLPRCTCGEWITKCSSSQNCFPA 103 (112)
Q Consensus 72 l~qlpA~Gyfl~~ct~~~Wi~~cs~s~~c~~~ 103 (112)
|-+...+|=++ +..| ..|++..||+++
T Consensus 33 mG~~~~~g~~~----~~~~-~~C~~N~DC~~~ 59 (76)
T PF01666_consen 33 MGEENFNGQEN----KELE-SYCTSNRDCGSG 59 (76)
T ss_pred EeeeccCCcEe----Eeec-cccccCcccCCC
Confidence 33444555443 4556 899999999986
No 11
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=20.59 E-value=39 Score=31.01 Aligned_cols=42 Identities=26% Similarity=0.441 Sum_probs=32.8
Q ss_pred cchhHhhhh-hccchhhhhhhhccCCCcc-ccccccccceeeec
Q 045450 54 LPKNLLAKT-TMIKNTGQVCIRADASGYF-LPRCTCGEWITKCS 95 (112)
Q Consensus 54 LPKnLLaK~-s~~KnT~qvl~qlpA~Gyf-l~~ct~~~Wi~~cs 95 (112)
|++-||.+. .+...-+|||-.|+..||+ +.-|--=.|+++|-
T Consensus 405 lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp 448 (730)
T COG1198 405 LSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECP 448 (730)
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCC
Confidence 667777765 3455668999999999998 66777778998884
No 12
>PF11193 DUF2812: Protein of unknown function (DUF2812); InterPro: IPR021359 This is a bacterial family of uncharacterised proteins, however some members of this family are annotated as membrane proteins.
Probab=20.29 E-value=49 Score=21.82 Aligned_cols=28 Identities=14% Similarity=0.048 Sum_probs=23.3
Q ss_pred hhhhhhhhccCCCccccccccccceeee
Q 045450 67 NTGQVCIRADASGYFLPRCTCGEWITKC 94 (112)
Q Consensus 67 nT~qvl~qlpA~Gyfl~~ct~~~Wi~~c 94 (112)
-.++-|+++-++||+|.+....-|+|+=
T Consensus 5 ~~E~wL~ema~kGw~l~~~~~~~~~F~k 32 (115)
T PF11193_consen 5 KEEQWLNEMAAKGWHLKKIGGFGYTFEK 32 (115)
T ss_pred HHHHHHHHHHHCCCeEEEecceEEEEEE
Confidence 3578899999999999988887788763
No 13
>PF14620 YPEB: YpeB sporulation
Probab=20.05 E-value=53 Score=27.13 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=29.2
Q ss_pred HHHHHhhcCcchhhccccchhHhhhhhccchhhhhhhhcc
Q 045450 37 LLHLMQQSSPSQVQLTKLPKNLLAKTTMIKNTGQVCIRAD 76 (112)
Q Consensus 37 LLhLMqqSSpaqa~L~kLPKnLLaK~s~~KnT~qvl~qlp 76 (112)
|-.+-+++|-||..|..||=.++. .-||+..|.|+-
T Consensus 61 l~~vwr~a~~A~~~l~qLPl~~~~----~~~t~~FLsqvG 96 (361)
T PF14620_consen 61 LAEVWRQASEAQNDLGQLPLSQMP----FNKTEKFLSQVG 96 (361)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcc----hhHHHHHHHHHH
Confidence 445667899999999999988765 678888888875
Done!