Query 045450
Match_columns 112
No_of_seqs 14 out of 16
Neff 1.6
Searched_HMMs 29240
Date Mon Mar 25 23:46:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045450.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045450hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i9o_A MHB8A peptide; beta-hai 69.4 4.2 0.00014 24.5 2.8 22 10-31 13-34 (37)
2 1kdl_A YOPD protein; yersinia, 55.0 4.7 0.00016 22.8 1.1 18 36-53 6-23 (26)
3 3qh6_A CT296; iron, modeling; 54.2 10 0.00035 28.6 3.2 21 92-112 114-134 (157)
4 1fs1_A SKP2 F-BOX, cyclin A/CD 32.4 7.9 0.00027 21.4 -0.3 39 48-95 6-44 (53)
5 1i8n_A Anti-platelet protein; 27.5 12 0.00041 27.1 -0.1 17 50-66 51-67 (126)
6 3b5n_C Protein transport prote 27.0 33 0.0011 21.8 1.9 45 28-76 8-53 (70)
7 3zrg_A Pexrd2, pexrd2 family s 26.9 37 0.0013 22.4 2.2 24 19-42 24-47 (67)
8 1l4a_C S-SNAP25 fusion protein 23.9 40 0.0014 22.1 1.9 46 28-76 23-68 (83)
9 1mkn_A Protein (midkine); hepa 22.1 37 0.0013 22.0 1.4 22 84-105 14-35 (59)
10 2i9n_A MHB4A peptide; beta-hai 21.4 62 0.0021 18.9 2.1 18 14-31 13-30 (33)
No 1
>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=69.35 E-value=4.2 Score=24.48 Aligned_cols=22 Identities=18% Similarity=0.370 Sum_probs=16.2
Q ss_pred CCCCCCCchhhHHHHHHHHHHH
Q 045450 10 GSSSSREGTAKAMVFDQISQTI 31 (112)
Q Consensus 10 ~sa~g~~~taka~VAeqIsQav 31 (112)
|+.+||+|+|-.+.|..|+.++
T Consensus 13 ggggggggsaaeayakriaeam 34 (37)
T 2i9o_A 13 GGGGGGGGSAAEAYAKRIAEAM 34 (37)
T ss_dssp CSCCCCSCSSHHHHHHHHHHHH
T ss_pred cCCCCCcchHHHHHHHHHHHHH
Confidence 4455677777778899998875
No 2
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=55.03 E-value=4.7 Score=22.81 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=14.5
Q ss_pred HHHHHHhhcCcchhhccc
Q 045450 36 NLLHLMQQSSPSQVQLTK 53 (112)
Q Consensus 36 NLLhLMqqSSpaqa~L~k 53 (112)
.+|+||||-+.+|.|-.|
T Consensus 6 Dvlql~qQy~qsh~qa~r 23 (26)
T 1kdl_A 6 DVLRLIEQYVSSHTHAMK 23 (26)
T ss_dssp HHHHHHHHHTTTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 589999999988876543
No 3
>3qh6_A CT296; iron, modeling; HET: PG4; 1.80A {Chlamydia trachomatis} PDB: 3qh7_A
Probab=54.17 E-value=10 Score=28.60 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=19.1
Q ss_pred eeecCCCCccccccccCCCCC
Q 045450 92 TKCSSSQNCFPAACKYGELPT 112 (112)
Q Consensus 92 ~~cs~s~~c~~~~~kyg~~p~ 112 (112)
+-|-|...||.|-|--|+||+
T Consensus 114 ~L~LSGe~aG~g~FF~G~YP~ 134 (157)
T 3qh6_A 114 LLCLSGEKAGWGLFFSGEYPQ 134 (157)
T ss_dssp EEECSSTTTTCEEEECSSCCT
T ss_pred EEEecCCcccceEEEeCCCcc
Confidence 668899999999999999996
No 4
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=32.41 E-value=7.9 Score=21.37 Aligned_cols=39 Identities=21% Similarity=0.289 Sum_probs=24.6
Q ss_pred hhhccccchhHhhhhhccchhhhhhhhccCCCccccccccccceeeec
Q 045450 48 QVQLTKLPKNLLAKTTMIKNTGQVCIRADASGYFLPRCTCGEWITKCS 95 (112)
Q Consensus 48 qa~L~kLPKnLLaK~s~~KnT~qvl~qlpA~Gyfl~~ct~~~Wi~~cs 95 (112)
+..+..||..+|.+ ++..||..-..-..+.|+.|+.-+.
T Consensus 6 ~~~~~~LP~eil~~---------I~~~L~~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 6 GVSWDSLPDELLLG---------IFSCLCLPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ---CCSSCHHHHHH---------HHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred CCCHHHCCHHHHHH---------HHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 44678999999865 5666765433333678888886554
No 5
>1i8n_A Anti-platelet protein; PAN module, toxin; 2.20A {Haementeria officinalis} SCOP: g.10.1.2
Probab=27.48 E-value=12 Score=27.09 Aligned_cols=17 Identities=47% Similarity=0.517 Sum_probs=13.8
Q ss_pred hccccchhHhhhhhccc
Q 045450 50 QLTKLPKNLLAKTTMIK 66 (112)
Q Consensus 50 ~L~kLPKnLLaK~s~~K 66 (112)
.=-|||.|||.|+.+..
T Consensus 51 pgwklpdnlltktefts 67 (126)
T 1i8n_A 51 PGWKLPDNLLTKTEFTS 67 (126)
T ss_dssp ETCBCCGGGEEECSCCS
T ss_pred CCCcCCccccccccccc
Confidence 34699999999987764
No 6
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=27.04 E-value=33 Score=21.79 Aligned_cols=45 Identities=18% Similarity=0.132 Sum_probs=26.9
Q ss_pred HHHHhhhhHHHHHHhhcCcch-hhccccchhHhhhhhccchhhhhhhhcc
Q 045450 28 SQTIQSTSNLLHLMQQSSPSQ-VQLTKLPKNLLAKTTMIKNTGQVCIRAD 76 (112)
Q Consensus 28 sQavqSTSNLLhLMqqSSpaq-a~L~kLPKnLLaK~s~~KnT~qvl~qlp 76 (112)
.++|.||.|.|.+++++-..= .-|. .|-.----+.||++-|+...
T Consensus 8 ~esl~STrr~L~~a~e~e~~g~~Tl~----~L~~QgEqL~rtE~~ld~i~ 53 (70)
T 3b5n_C 8 QSSVASTRNTLKMAQDAERAGMNTLG----MLGHQSEQLNNVEGNLDLMK 53 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHH
Confidence 357999999999999864331 1122 12233344566666666544
No 7
>3zrg_A Pexrd2, pexrd2 family secreted RXLR effector peptide, PUT; protein binding, plant pathogen interactions; 1.75A {Phytophthora infestans}
Probab=26.92 E-value=37 Score=22.35 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHhhhhHHHHHHh
Q 045450 19 AKAMVFDQISQTIQSTSNLLHLMQ 42 (112)
Q Consensus 19 aka~VAeqIsQavqSTSNLLhLMq 42 (112)
++--++|+|+-+..|+.-|-+|||
T Consensus 24 ~~LGIadkia~a~~s~~~L~~~mq 47 (67)
T 3zrg_A 24 AKLKLTDKIAAAANSARAMEKLGE 47 (67)
T ss_dssp HHTTCHHHHHHHHHCHHHHHHHHT
T ss_pred HHhCcHHHHHHHHcChHHHHHHhc
Confidence 344579999999999988999987
No 8
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=23.86 E-value=40 Score=22.08 Aligned_cols=46 Identities=11% Similarity=0.170 Sum_probs=27.2
Q ss_pred HHHHhhhhHHHHHHhhcCcchhhccccchhHhhhhhccchhhhhhhhcc
Q 045450 28 SQTIQSTSNLLHLMQQSSPSQVQLTKLPKNLLAKTTMIKNTGQVCIRAD 76 (112)
Q Consensus 28 sQavqSTSNLLhLMqqSSpaqa~L~kLPKnLLaK~s~~KnT~qvl~qlp 76 (112)
..++.||-|.|.++++|-..=. +==..|..----+.||+.-|++..
T Consensus 23 ~esl~STrr~l~l~~es~~~g~---~Tl~~L~~QgEQL~rie~~ld~I~ 68 (83)
T 1l4a_C 23 DDSLESTRRMLNMCEESKEAGI---RTLVMLDEQGEQLDRIEEGLDQIN 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999743311 111123333445566666665554
No 9
>1mkn_A Protein (midkine); heparin-binding growth factor; NMR {Synthetic} SCOP: g.5.1.1
Probab=22.12 E-value=37 Score=21.99 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=17.0
Q ss_pred ccccccceeeecCCCCcccccc
Q 045450 84 RCTCGEWITKCSSSQNCFPAAC 105 (112)
Q Consensus 84 ~ct~~~Wi~~cs~s~~c~~~~~ 105 (112)
.|.-..|.-|+-++.||+-+..
T Consensus 14 eC~ew~~g~Cvp~~gDCG~G~R 35 (59)
T 1mkn_A 14 ECAEWAWGPCTPSSKDCGVGFR 35 (59)
T ss_dssp CCSSSEEECCCCSSSSSBSCCE
T ss_pred cccCceeccccCCcCccccccc
Confidence 4666666799999999997654
No 10
>2i9n_A MHB4A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=21.36 E-value=62 Score=18.89 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=13.9
Q ss_pred CCCchhhHHHHHHHHHHH
Q 045450 14 SREGTAKAMVFDQISQTI 31 (112)
Q Consensus 14 g~~~taka~VAeqIsQav 31 (112)
||||+|-.+.|..|+.++
T Consensus 13 ggggsaaeayakriaeam 30 (33)
T 2i9n_A 13 GGGGSAAEAYAKRIAEAM 30 (33)
T ss_dssp SSCCCSTHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHH
Confidence 567777778888888775
Done!