Query 045450
Match_columns 112
No_of_seqs 14 out of 16
Neff 1.6
Searched_HMMs 13730
Date Mon Mar 25 23:46:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045450.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045450hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ovrb1 a.158.1.1 (B:2263-2364 35.0 2.4 0.00018 24.4 -0.9 49 37-94 3-53 (102)
2 d1i8na_ g.10.1.2 (A:) Anti-pla 33.7 3.8 0.00028 26.7 -0.1 15 52-66 17-31 (89)
3 d1k8ib2 d.19.1.1 (B:1-94) Clas 28.6 21 0.0015 23.3 2.9 28 17-44 47-74 (94)
4 d1t72a_ a.7.12.1 (A:) Phosphat 21.3 47 0.0034 20.7 3.6 27 13-41 1-27 (215)
5 d1mkna_ g.5.1.1 (A:) Midkine, 21.1 20 0.0015 21.7 1.6 20 84-103 14-33 (59)
6 d2h7aa1 d.350.1.1 (A:2-110) Hy 20.3 9.9 0.00072 25.1 -0.0 18 66-83 67-84 (109)
7 d1l8na2 d.92.2.2 (A:4-142) alp 18.6 18 0.0013 22.6 1.0 24 34-57 115-139 (139)
8 d1ckea_ c.37.1.1 (A:) CMP kina 17.6 46 0.0034 19.6 2.7 27 14-40 10-40 (225)
9 d2bdta1 c.37.1.25 (A:1-176) Hy 16.9 36 0.0026 18.9 2.0 18 14-31 9-26 (176)
10 d1mc0a2 d.110.2.1 (A:402-555) 15.5 79 0.0057 17.1 3.2 23 21-44 130-152 (154)
No 1
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.04 E-value=2.4 Score=24.41 Aligned_cols=49 Identities=24% Similarity=0.314 Sum_probs=31.2
Q ss_pred HHHHHhhcCcch--hhccccchhHhhhhhccchhhhhhhhccCCCccccccccccceeee
Q 045450 37 LLHLMQQSSPSQ--VQLTKLPKNLLAKTTMIKNTGQVCIRADASGYFLPRCTCGEWITKC 94 (112)
Q Consensus 37 LLhLMqqSSpaq--a~L~kLPKnLLaK~s~~KnT~qvl~qlpA~Gyfl~~ct~~~Wi~~c 94 (112)
+-|+.+.-+|.- --|..||..++.+ |+..||+.--.-..++|+.|+.-|
T Consensus 3 ~~~~~~~~~p~~~~D~i~~LP~Eil~~---------Ils~Ld~~dL~~~~~vcr~w~~l~ 53 (102)
T d2ovrb1 3 VKHMMQVIEPQFQRDFISLLPKELALY---------VLSFLEPKDLLQAAQTCRYWRILA 53 (102)
T ss_dssp HHHHHHHHCCCCCCSTTTSSCHHHHHH---------HHTTSCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHcCchhccCChhhCCHHHHHH---------HHHcCCHHHHHHHHHHHHHHHHHH
Confidence 345666666762 3478899999864 566666544444467777777544
No 2
>d1i8na_ g.10.1.2 (A:) Anti-platelet protein {Leech (Haementeria officinalis) [TaxId: 6410]}
Probab=33.71 E-value=3.8 Score=26.68 Aligned_cols=15 Identities=53% Similarity=0.687 Sum_probs=12.8
Q ss_pred cccchhHhhhhhccc
Q 045450 52 TKLPKNLLAKTTMIK 66 (112)
Q Consensus 52 ~kLPKnLLaK~s~~K 66 (112)
-|||.|||.|+.+..
T Consensus 17 wklpdnlltktefts 31 (89)
T d1i8na_ 17 WKLPDNLLTKTEFTS 31 (89)
T ss_dssp CBCCGGGEEECSCCS
T ss_pred CcCCccccccccccc
Confidence 589999999987764
No 3
>d1k8ib2 d.19.1.1 (B:1-94) Class II MHC beta chain, N-terminal domain {Mouse (Mus musculus), H2-DM [TaxId: 10090]}
Probab=28.60 E-value=21 Score=23.25 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=23.8
Q ss_pred chhhHHHHHHHHHHHhhhhHHHHHHhhc
Q 045450 17 GTAKAMVFDQISQTIQSTSNLLHLMQQS 44 (112)
Q Consensus 17 ~taka~VAeqIsQavqSTSNLLhLMqqS 44 (112)
-..--.||++||.-.+.-++|++-|++-
T Consensus 47 ~g~L~~~A~~is~~LN~~~~lvqRl~~g 74 (94)
T d1k8ib2 47 FGVLSRLAEIISNILNEQESLIHRLQNG 74 (94)
T ss_dssp CSTTHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHhh
Confidence 3445689999999999999999999864
No 4
>d1t72a_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Aquifex aeolicus [TaxId: 63363]}
Probab=21.32 E-value=47 Score=20.74 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=16.3
Q ss_pred CCCCchhhHHHHHHHHHHHhhhhHHHHHH
Q 045450 13 SSREGTAKAMVFDQISQTIQSTSNLLHLM 41 (112)
Q Consensus 13 ~g~~~taka~VAeqIsQavqSTSNLLhLM 41 (112)
|||||+.| +-+++.+.-+..-++..+.
T Consensus 1 ~~~~~~~~--~~~~L~~l~~~l~~M~~~v 27 (215)
T d1t72a_ 1 GGGGGGMK--LFKELEETKEQVIKMAKLV 27 (215)
T ss_dssp CCCTHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcch--HHHHHHHHHHHHHHHHHHH
Confidence 45677777 6677776665555544443
No 5
>d1mkna_ g.5.1.1 (A:) Midkine, a heparin-binding growth factor, N-terminal domain {Synthetic}
Probab=21.07 E-value=20 Score=21.74 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=14.9
Q ss_pred ccccccceeeecCCCCcccc
Q 045450 84 RCTCGEWITKCSSSQNCFPA 103 (112)
Q Consensus 84 ~ct~~~Wi~~cs~s~~c~~~ 103 (112)
.|.--.|.-|+-++.||+-+
T Consensus 14 ~C~eW~wg~Cvp~~gDCG~G 33 (59)
T d1mkna_ 14 ECAEWAWGPCTPSSKDCGVG 33 (59)
T ss_dssp CCSSSEEECCCCSSSSSBSC
T ss_pred cccccccccccCCCCcccCc
Confidence 34444455899999999987
No 6
>d2h7aa1 d.350.1.1 (A:2-110) Hypothetical protein YcgL {Escherichia coli [TaxId: 562]}
Probab=20.33 E-value=9.9 Score=25.15 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=15.5
Q ss_pred chhhhhhhhccCCCcccc
Q 045450 66 KNTGQVCIRADASGYFLP 83 (112)
Q Consensus 66 KnT~qvl~qlpA~Gyfl~ 83 (112)
-+.++|++.+..+||||-
T Consensus 67 ~d~~~Vl~~l~~qGfyLQ 84 (109)
T d2h7aa1 67 ADIEKVKQALTEQGYYLQ 84 (109)
T ss_dssp SCHHHHHHHHHHTSEEEE
T ss_pred CCHHHHHHHHHhCCEEEE
Confidence 367899999999999984
No 7
>d1l8na2 d.92.2.2 (A:4-142) alpha-D-glucuronidase, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=18.60 E-value=18 Score=22.60 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=17.5
Q ss_pred hhHHHHHHhhc-Ccchhhccccchh
Q 045450 34 TSNLLHLMQQS-SPSQVQLTKLPKN 57 (112)
Q Consensus 34 TSNLLhLMqqS-Spaqa~L~kLPKn 57 (112)
+-.||++||+. +..+..+..-|||
T Consensus 115 vf~Ll~~lq~g~~l~~l~i~~~Pkn 139 (139)
T d1l8na2 115 VFHFLRLLQMGENIAQLSIIEQPKN 139 (139)
T ss_dssp HHHHHHHHHTTCCCTTCEEEECCSC
T ss_pred HHHHHHHHHcCCCCCCCccccCCCC
Confidence 44678888776 5667778888876
No 8
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Probab=17.59 E-value=46 Score=19.62 Aligned_cols=27 Identities=11% Similarity=0.378 Sum_probs=20.7
Q ss_pred CCCchhhHHHHHHHHHHHh----hhhHHHHH
Q 045450 14 SREGTAKAMVFDQISQTIQ----STSNLLHL 40 (112)
Q Consensus 14 g~~~taka~VAeqIsQavq----STSNLLhL 40 (112)
|.-|+-|.++|..|++--. ||.+||.-
T Consensus 10 GppGSGKgT~ak~La~~~gl~~iStGdLlR~ 40 (225)
T d1ckea_ 10 GPSGAGKGTLCKAMAEALQWHLLDSGAIYRV 40 (225)
T ss_dssp CCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhCCcEECHHHHHHH
Confidence 4555668888888888776 89999863
No 9
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}
Probab=16.93 E-value=36 Score=18.88 Aligned_cols=18 Identities=11% Similarity=0.335 Sum_probs=13.8
Q ss_pred CCCchhhHHHHHHHHHHH
Q 045450 14 SREGTAKAMVFDQISQTI 31 (112)
Q Consensus 14 g~~~taka~VAeqIsQav 31 (112)
|..|+-|.+||.++++..
T Consensus 9 G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 9 GPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp CSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHc
Confidence 455667999999998764
No 10
>d1mc0a2 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.53 E-value=79 Score=17.13 Aligned_cols=23 Identities=9% Similarity=0.007 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhhc
Q 045450 21 AMVFDQISQTIQSTSNLLHLMQQS 44 (112)
Q Consensus 21 a~VAeqIsQavqSTSNLLhLMqqS 44 (112)
.++|.||+.|++.. .|..-++++
T Consensus 130 ~~la~q~aiAi~na-~l~~~l~~~ 152 (154)
T d1mc0a2 130 TAFSIYCGISIAHS-LLYKKVNEA 152 (154)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHT
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHh
Confidence 57899999999854 455555543
Done!