BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045454
(133 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 161 bits (408), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 69/113 (61%), Positives = 92/113 (81%)
Query: 16 HVEFASKNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPS 75
H+E A NVHLITT W+ K+SE+ +DGKIV+ANFSA+WC PCK+IAP YI+L++ YPS
Sbjct: 18 HIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYPS 77
Query: 76 MICLTVDVDELPEFSNSWGVTATPTFFFLKDGRQIDKLIGSNKLELQRKTAAV 128
++ L +DVDEL +FS SW + ATPTFFFL+DG+Q+DKL+G+NK EL +K A+
Sbjct: 78 LMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKITAI 130
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 157 bits (398), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 67/113 (59%), Positives = 91/113 (80%)
Query: 16 HVEFASKNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPS 75
H+E A NVHLITT W+ K+SE+ +DGKIV+ANFSA+WC P ++IAP YI+L++ YPS
Sbjct: 18 HIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPS 77
Query: 76 MICLTVDVDELPEFSNSWGVTATPTFFFLKDGRQIDKLIGSNKLELQRKTAAV 128
++ L +DVDEL +FS SW + ATPTFFFL+DG+Q+DKL+G+NK EL +K A+
Sbjct: 78 LMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKITAI 130
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 98.2 bits (243), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 65/91 (71%)
Query: 33 WEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNS 92
++A+++++ + GK+V+ +F+A WC PC+ IAPV+ + A K+P + L VDVDEL E +
Sbjct: 25 FDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEK 84
Query: 93 WGVTATPTFFFLKDGRQIDKLIGSNKLELQR 123
+ V A PTF F+KDG + DK++G+ K +LQ
Sbjct: 85 YNVEAMPTFLFIKDGAEADKVVGARKDDLQN 115
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 95.1 bits (235), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 71/112 (63%), Gaps = 2/112 (1%)
Query: 17 VEFASKNVHLIT--TMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP 74
+E AS+ +I T+ +W ++ ++ + +VV +F+A WC PC+ IAP + LA K P
Sbjct: 9 LEMASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP 68
Query: 75 SMICLTVDVDELPEFSNSWGVTATPTFFFLKDGRQIDKLIGSNKLELQRKTA 126
+++ L VD DEL ++ W + A PTF FLK+G+ +DK++G+ K ELQ A
Sbjct: 69 NVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIA 120
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 60/90 (66%)
Query: 29 TMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPE 88
T+ +W+ + K++V +F+A WC PCK IAP++ +LA K+P++ L VDVDEL
Sbjct: 11 TVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKA 70
Query: 89 FSNSWGVTATPTFFFLKDGRQIDKLIGSNK 118
+ W V A PTF FLKDG+ +DK +G++K
Sbjct: 71 VAEEWNVEAMPTFIFLKDGKLVDKTVGADK 100
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 58/85 (68%)
Query: 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFF 103
GK+V+ +F+A WC PC+ IAPV+ + A K+P I L VDVDEL + + ++ V A PTF F
Sbjct: 28 GKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDELKDVAEAYNVEAMPTFLF 87
Query: 104 LKDGRQIDKLIGSNKLELQRKTAAV 128
+KDG ++D ++G K ++ K A+
Sbjct: 88 IKDGEKVDSVVGGRKDDIHTKIVAL 112
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 89.0 bits (219), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 62/100 (62%)
Query: 27 ITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDEL 86
+ ++ W ++ E+ K+VV +F+A WC PC+ +APV+ LA K+P+ + L VDVDEL
Sbjct: 17 VHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVDVDEL 76
Query: 87 PEFSNSWGVTATPTFFFLKDGRQIDKLIGSNKLELQRKTA 126
+ + V A PTF F+K+G D+++G+ K EL K
Sbjct: 77 KPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTAKVG 116
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 85.5 bits (210), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 61/100 (61%)
Query: 27 ITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDEL 86
+ ++ W ++ E+ K+VV +F+A WC P + +APV+ LA K+P+ + L VDVDEL
Sbjct: 20 VHSLEQWTMQIEEANTAKKLVVIDFTASWCGPSRIMAPVFADLAKKFPNAVFLKVDVDEL 79
Query: 87 PEFSNSWGVTATPTFFFLKDGRQIDKLIGSNKLELQRKTA 126
+ + V A PTF F+K+G D+++G+ K EL K
Sbjct: 80 KPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTAKVG 119
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 62/99 (62%), Gaps = 2/99 (2%)
Query: 24 VHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDV 83
+ ++ T E ++E+ G+++V +F AQWC PC+ IAP LA + P + VDV
Sbjct: 1 MRVLATAADLEKLINEN--KGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDV 58
Query: 84 DELPEFSNSWGVTATPTFFFLKDGRQIDKLIGSNKLELQ 122
D+ E + + VTA PTF F+KDG+++D+ G+N+ +L+
Sbjct: 59 DQNEEAAAKYSVTAMPTFVFIKDGKEVDRFSGANETKLR 97
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 58/94 (61%)
Query: 30 MVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEF 89
+V+ +A+ I ++V+ +F A+WC PCK+IAP Y + + Y M+ + VDVDE+ E
Sbjct: 12 IVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEV 71
Query: 90 SNSWGVTATPTFFFLKDGRQIDKLIGSNKLELQR 123
+ +T+ PTF K+G +D L+G+N L++
Sbjct: 72 TEKENITSMPTFKVYKNGSSVDTLLGANDSALKQ 105
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 53/78 (67%)
Query: 45 KIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFL 104
K+VV +FSA WC PCK I P + L++KY ++I L VDVD+ + ++ V ATPTF F
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVASEAEVKATPTFQFF 80
Query: 105 KDGRQIDKLIGSNKLELQ 122
K G+++ + G+NK +L+
Sbjct: 81 KKGQKVGEFSGANKEKLE 98
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 52/78 (66%)
Query: 45 KIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFL 104
K+VV +FSA WC PCK I P + L++KY ++I L VDVD+ + ++ V TPTF F
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCTPTFQFF 80
Query: 105 KDGRQIDKLIGSNKLELQ 122
K G+++ + G+NK +L+
Sbjct: 81 KKGQKVGEFSGANKEKLE 98
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 52/78 (66%)
Query: 45 KIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFL 104
K+VV +FSA WC P K I P + L++KY ++I L VDVD+ + ++ V ATPTF F
Sbjct: 21 KLVVVDFSATWCGPAKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVASEAEVKATPTFQFF 80
Query: 105 KDGRQIDKLIGSNKLELQ 122
K G+++ + G+NK +L+
Sbjct: 81 KKGQKVGEFSGANKEKLE 98
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 52/78 (66%)
Query: 45 KIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFL 104
K+VV +FSA WC PCK I P + L++KY ++I L VDVD+ + ++ V + PTF F
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASESEVKSMPTFQFF 80
Query: 105 KDGRQIDKLIGSNKLELQ 122
K G+++ + G+NK +L+
Sbjct: 81 KKGQKVGEFSGANKEKLE 98
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 52/78 (66%)
Query: 45 KIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFL 104
K+VV +FSA WC PCK I P + L++KY ++I L VDVD+ + ++ V + PTF F
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKSMPTFQFF 80
Query: 105 KDGRQIDKLIGSNKLELQ 122
K G+++ + G+NK +L+
Sbjct: 81 KKGQKVGEFSGANKEKLE 98
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 58/101 (57%)
Query: 27 ITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDEL 86
+ T ++ +I K+VV +F A WC PCK IAP+ + +++YP +DVDEL
Sbjct: 1 MVTQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDEL 60
Query: 87 PEFSNSWGVTATPTFFFLKDGRQIDKLIGSNKLELQRKTAA 127
+ + V+A PT K+G+++ K++G+N +++ AA
Sbjct: 61 GDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQAIAA 101
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 58/101 (57%)
Query: 27 ITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDEL 86
+ T ++ +I K+VV +F A WC PCK IAP+ + +++YP +DVDEL
Sbjct: 7 MVTQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDEL 66
Query: 87 PEFSNSWGVTATPTFFFLKDGRQIDKLIGSNKLELQRKTAA 127
+ + V+A PT K+G+++ K++G+N +++ AA
Sbjct: 67 GDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQAIAA 107
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 45 KIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFL 104
K+VV +FSA WC PCK I P + L++KY ++I L VDVD+ + ++ V PTF F
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASEXEVKCMPTFQFF 80
Query: 105 KDGRQIDKLIGSNKLELQ 122
K G+++ + G+NK +L+
Sbjct: 81 KKGQKVGEFSGANKEKLE 98
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 45 KIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFL 104
K+VV +FSA WC PCK I P + L++KY ++I L VDVD+ + ++ V PTF F
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFF 80
Query: 105 KDGRQIDKLIGSNKLELQ 122
K G+++ + G+NK +L+
Sbjct: 81 KKGQKVGEFSGANKEKLE 98
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Query: 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKYP-SMICLTVDVDELPEFSNSWGVTATPTFF 102
GK+VV +F A WC PCK I+P ++L+ ++ +++ L VDVDE + + + +++ PTF
Sbjct: 25 GKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFV 84
Query: 103 FLKDGRQIDKLIGSNKLELQ 122
FLK+G ++++ G+N L+
Sbjct: 85 FLKNGVKVEEFAGANAKRLE 104
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 51/78 (65%)
Query: 45 KIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFL 104
K+VV +FSA WC PCK I P + L++KY ++I L VDV++ + ++ V PTF F
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVNDCQDVASECEVKCMPTFQFF 80
Query: 105 KDGRQIDKLIGSNKLELQ 122
K G+++ + G+NK +L+
Sbjct: 81 KKGQKVGEFSGANKEKLE 98
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Query: 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKYP-SMICLTVDVDELPEFSNSWGVTATPTFF 102
GK+VV +F A WC PCK I+P ++L+ ++ +++ L VDVDE + + + +++ PTF
Sbjct: 20 GKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFV 79
Query: 103 FLKDGRQIDKLIGSNKLELQ 122
FLK+G ++++ G+N L+
Sbjct: 80 FLKNGVKVEEFAGANAKRLE 99
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Query: 45 KIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFL 104
K+VV +F A WC PCK IAP++ +L++KY + I + VDVD+L E + + ++A PTF +
Sbjct: 25 KLVVVDFFATWCGPCKTIAPLFKELSEKYDA-IFVKVDVDKLEETARKYNISAMPTFIAI 83
Query: 105 KDGRQIDKLIGSN 117
K+G ++ ++G++
Sbjct: 84 KNGEKVGDVVGAS 96
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Query: 45 KIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFL 104
K+VV +F A WC PCK IAP++ +L++KY + I + VDVD+L E + + ++A PTF +
Sbjct: 34 KLVVVDFFATWCGPCKTIAPLFKELSEKYDA-IFVKVDVDKLEETARKYNISAMPTFIAI 92
Query: 105 KDGRQIDKLIGSN 117
K+G ++ ++G++
Sbjct: 93 KNGEKVGDVVGAS 105
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 51/78 (65%)
Query: 45 KIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFL 104
K+VV +FSA WC P K I P + L++KY ++I L VDVD+ + ++ V + PTF F
Sbjct: 21 KLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDSQDVASESEVKSMPTFQFF 80
Query: 105 KDGRQIDKLIGSNKLELQ 122
K G+++ + G+NK +L+
Sbjct: 81 KKGQKVGEFSGANKEKLE 98
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 51/78 (65%)
Query: 45 KIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFL 104
K+VV +FSA WC P K I P + L++KY ++I L VDVD+ + ++ V + PTF F
Sbjct: 32 KLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKSMPTFQFF 91
Query: 105 KDGRQIDKLIGSNKLELQ 122
K G+++ + G+NK +L+
Sbjct: 92 KKGQKVGEFSGANKEKLE 109
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 47/83 (56%)
Query: 41 IKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPT 100
IK +V +F A WC PCK + P +L YP + + DVDE P+ + VTA PT
Sbjct: 27 IKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPT 86
Query: 101 FFFLKDGRQIDKLIGSNKLELQR 123
F KDG+ I K+IG+N L++
Sbjct: 87 FVLGKDGQLIGKIIGANPTALEK 109
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 57/101 (56%)
Query: 27 ITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDEL 86
+ T ++ +I K+VV +F A WC P K IAP+ + +++YP +DVDEL
Sbjct: 7 MVTQFKTASEFDSAIAQDKLVVVDFYATWCGPSKMIAPMIEKFSEQYPQADFYKLDVDEL 66
Query: 87 PEFSNSWGVTATPTFFFLKDGRQIDKLIGSNKLELQRKTAA 127
+ + V+A PT K+G+++ K++G+N +++ AA
Sbjct: 67 GDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQAIAA 107
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%)
Query: 45 KIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFL 104
K+VV +FSA WC P K I P + L++KY ++I L VDVD+ + ++ V PTF F
Sbjct: 21 KLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKRMPTFQFF 80
Query: 105 KDGRQIDKLIGSNKLELQ 122
K G+++ + G+NK +L+
Sbjct: 81 KKGQKVGEFSGANKEKLE 98
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFF 103
K+VV +F A WC PCK IAP +L+ ++ L VDVDE + + + PTF F
Sbjct: 20 NKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVDECEDIAQDNQIACMPTFLF 79
Query: 104 LKDGRQIDKLIGSN 117
+K+G+++D L G+N
Sbjct: 80 MKNGQKLDSLSGAN 93
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 47/72 (65%)
Query: 45 KIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFL 104
+I V +F A+WC+PC +AP+ +LA+ YP + ++ DE P+ + +GV + PT F
Sbjct: 17 EIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGVMSLPTVIFF 76
Query: 105 KDGRQIDKLIGS 116
KDG +D++IG+
Sbjct: 77 KDGEPVDEIIGA 88
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 51/83 (61%)
Query: 45 KIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFL 104
K+VV +F A WC PCK IAP+ + A++Y +DVDE+ + + V++ PT F
Sbjct: 27 KLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFY 86
Query: 105 KDGRQIDKLIGSNKLELQRKTAA 127
K G+++ +++G+N +++ A+
Sbjct: 87 KGGKEVTRVVGANPAAIKQAIAS 109
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 51/83 (61%)
Query: 45 KIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFL 104
K+VV +F A WC PCK IAP+ + A++Y +DVDE+ + + V++ PT F
Sbjct: 20 KLVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFY 79
Query: 105 KDGRQIDKLIGSNKLELQRKTAA 127
K G+++ +++G+N +++ A+
Sbjct: 80 KGGKEVTRVVGANPAAIKQAIAS 102
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 45 KIVVANFSAQWCSPCKKIAPVYIQLADKYPS--MICLTVDVDELPEFSNSWGVTATPTFF 102
K+VV +F A WC PCK I PV+ +++D + VDVDE + + G+ A PTF
Sbjct: 34 KVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMPTFV 93
Query: 103 FLKDGRQIDKLIGSNKLELQ 122
F K+G++ID ++G++ +LQ
Sbjct: 94 FFKNGQKIDTVVGADPSKLQ 113
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 67/101 (66%), Gaps = 1/101 (0%)
Query: 23 NVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPS-MICLTV 81
+V +I + +W+A++++ ++ K +V +F+A WC PCK IAP++ L++ Y +I L V
Sbjct: 3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKV 62
Query: 82 DVDELPEFSNSWGVTATPTFFFLKDGRQIDKLIGSNKLELQ 122
DVD + + + G+TA PTF KDG + D L+G+++ +L+
Sbjct: 63 DVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLK 103
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 49/79 (62%)
Query: 38 SESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTA 97
E I KIVV +F A+WC+PC +APV +LA+ YP + ++ +E + + +G+ +
Sbjct: 17 DEFITKNKIVVVDFWAEWCAPCLILAPVIEELANDYPQVAFGKLNTEESQDIAMRYGIMS 76
Query: 98 TPTFFFLKDGRQIDKLIGS 116
PT F K+G +D+++G+
Sbjct: 77 LPTIMFFKNGELVDQILGA 95
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Query: 29 TMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLT-VDVDELP 87
TM +A ++I+ K V+ +F A WC PC+ +APV + A+ + + + ++VDE P
Sbjct: 2 TMTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP 61
Query: 88 EFSNSWGVTATPTFFFLKDGRQIDKLIGSN-KLELQRKTAAV 128
E ++ +G+ + PT K GR + +LIG K +L+ + A V
Sbjct: 62 ETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQLADV 103
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 66/101 (65%), Gaps = 1/101 (0%)
Query: 23 NVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPS-MICLTV 81
+V +I + +W+A++++ ++ K +V F+A WC PCK IAP++ L++ Y +I L V
Sbjct: 3 SVIVIDSKAAWDAQLAKGKEEHKPIVVAFTATWCGPCKMIAPLFETLSNDYAGKVIFLKV 62
Query: 82 DVDELPEFSNSWGVTATPTFFFLKDGRQIDKLIGSNKLELQ 122
DVD + + + G+TA PTF KDG + D L+G+++ +L+
Sbjct: 63 DVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLK 103
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 45 KIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFL 104
K+VV +FSA WC PCK I P + L++KY ++I L VDVD+ + + +G+ PT
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVAPKYGIRGIPTLLLF 80
Query: 105 KDGRQIDKLIGS 116
K+G +G+
Sbjct: 81 KNGEVAATKVGA 92
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 45 KIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFL 104
K+VV +FSA W P K I P + L++KY ++I L VDVD+ + ++ V PTF F
Sbjct: 21 KLVVVDFSATWSGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFF 80
Query: 105 KDGRQIDKLIGSNKLELQ 122
K G+++ + G+NK +L+
Sbjct: 81 KKGQKVGEFSGANKEKLE 98
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 50/83 (60%)
Query: 45 KIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFL 104
K+VV +F A WC P K IAP+ + A++Y +DVDE+ + + V++ PT F
Sbjct: 28 KLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFY 87
Query: 105 KDGRQIDKLIGSNKLELQRKTAA 127
K G+++ +++G+N +++ A+
Sbjct: 88 KGGKEVTRVVGANPAAIKQAIAS 110
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 58/102 (56%), Gaps = 2/102 (1%)
Query: 29 TMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLT-VDVDELP 87
TM +A ++I+ V+ +F A WC PC+ +APV + A+ + + + ++VDE P
Sbjct: 2 TMTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP 61
Query: 88 EFSNSWGVTATPTFFFLKDGRQIDKLIGSN-KLELQRKTAAV 128
E ++ +G+ + PT K GR + +LIG K +L+ + A V
Sbjct: 62 ETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQLADV 103
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 50/83 (60%)
Query: 45 KIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFL 104
K+VV +F A WC P K IAP+ + A++Y +DVDE+ + + V++ PT F
Sbjct: 20 KLVVVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFY 79
Query: 105 KDGRQIDKLIGSNKLELQRKTAA 127
K G+++ +++G+N +++ A+
Sbjct: 80 KGGKEVTRVVGANPAAIKQAIAS 102
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 58/102 (56%), Gaps = 2/102 (1%)
Query: 29 TMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLT-VDVDELP 87
TM +A ++I+ K V+ +F A WC PC+ +APV + A+ + + + ++VDE P
Sbjct: 2 TMTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP 61
Query: 88 EFSNSWGVTATPTFFFLKDGRQIDKLIGSN-KLELQRKTAAV 128
E ++ +G+ + PT K G + +LIG K +L+ + A V
Sbjct: 62 ETTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQLADV 103
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 38 SESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPS-MICLTVDVDELPEFSNSWGVT 96
E++ +V+ +F A+WC+PC+ IAP+ ++A +Y ++ +DVDE P+ + + V
Sbjct: 13 DETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKTAXRYRVX 72
Query: 97 ATPTFFFLKDGRQIDKLIGSN 117
+ PT KDG+ ++ L+G+
Sbjct: 73 SIPTVILFKDGQPVEVLVGAQ 93
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 38 SESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPS-MICLTVDVDELPEFSNSWGVT 96
E++ +V+ +F A+WC+PC+ IAP+ ++A +Y ++ +DVDE P+ + + V
Sbjct: 12 DETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKTAXRYRVX 71
Query: 97 ATPTFFFLKDGRQIDKLIGSN 117
+ PT KDG+ ++ L+G+
Sbjct: 72 SIPTVILFKDGQPVEVLVGAQ 92
>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human
Thioredoxin-Like Protein
Length = 107
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 49/80 (61%)
Query: 45 KIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFL 104
++ V F+ + C PC +IAP + +++KYP + L VDV + + + ++ATPTF F
Sbjct: 22 RLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFQFF 81
Query: 105 KDGRQIDKLIGSNKLELQRK 124
++ +ID+ G++ + L+ K
Sbjct: 82 RNKVRIDQYQGADAVGLEEK 101
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 45 KIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFL 104
K+VV +FSA WC PCK I P + L++KY ++I L VDVD+ + ++ V PTF F
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDXQDVASEXEVKCMPTFQFF 80
Query: 105 KDGRQIDKLIGSNKLELQ 122
K G+++ + G+NK +L+
Sbjct: 81 KKGQKVGEFSGANKEKLE 98
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 29 TMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLT-VDVDELP 87
TM +A ++I+ V+ +F A WC PC+ +APV + A+ + + + ++VDE P
Sbjct: 2 TMTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP 61
Query: 88 EFSNSWGVTATPTFFFLKDGRQIDKLIGSN-KLELQRKTAAV 128
E ++ +G+ + PT K G + +LIG K +L+ + A V
Sbjct: 62 ETTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQLADV 103
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 41 IKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLT-VDVDELPEFSNSWGVTATP 99
+K +V+ +F A+WC PCK I P ++ ++ + + V++D+ PE N++ V + P
Sbjct: 17 LKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRSIP 76
Query: 100 TFFFLKDGRQIDKLIGS 116
T ++DG+ IDK +G+
Sbjct: 77 TLMLVRDGKVIDKKVGA 93
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 38 SESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPS-MICLTVDVDELPEFSNSWGVT 96
E +K K V+ +F A WC PC+ IAP+ +LA +Y + + V+VDE P + +G+
Sbjct: 13 QEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGIR 72
Query: 97 ATPTFFFLKDGRQIDKLIGSNKLE 120
+ PT K+G+ +D+L+G+ E
Sbjct: 73 SIPTLLLFKNGQVVDRLVGAQPKE 96
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 29 TMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMI-CLTVDVDELP 87
T +++KV ++ + +F A WC PCK IAPV +LA Y L +DVDE P
Sbjct: 10 TDADFDSKVESGVQ-----LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENP 64
Query: 88 EFSNSWGVTATPTFFFLKDGRQIDKLIG 115
+ + V + PT KDG+ +DK++G
Sbjct: 65 STAAKYEVMSIPTLIVFKDGQPVDKVVG 92
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 6/85 (7%)
Query: 32 SWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMI-CLTVDVDELPEFS 90
S+ A+ SE + V+A+F A WC PCK IAPV +L + + + +DVDE E +
Sbjct: 10 SFSAETSEGV-----VLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETA 64
Query: 91 NSWGVTATPTFFFLKDGRQIDKLIG 115
+GV + PT LKDG ++ +G
Sbjct: 65 GKYGVMSIPTLLVLKDGEVVETSVG 89
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 58.9 bits (141), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 47 VVANFSAQWCSPCKKIAPVYIQLADKYPSMI-CLTVDVDELPEFSNSWGVTATPTFFFLK 105
V+ +F A WC PC+ IAPV ++A +Y + C+ ++ DE P ++ +G+ + PT K
Sbjct: 22 VLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFK 81
Query: 106 DGRQIDKLIGS 116
G++ + +IG+
Sbjct: 82 GGKKCETIIGA 92
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 38 SESIKDGKIVVANFSAQWCSPCKKIAPVYIQLA-DKYPSMICLTVDVDELPEFSNSWGVT 96
++ + K V+ +F A WC PCK +APV ++A ++ + +DVD PE + ++ V
Sbjct: 19 TDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVV 78
Query: 97 ATPTFFFLKDGRQIDKLIGS-NKLELQRKTAAV 128
+ PT KDG+ + +++G+ K L R+ + V
Sbjct: 79 SIPTLILFKDGQPVKRIVGAKGKAALLRELSDV 111
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 29 TMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICL-TVDVDELP 87
T+V E E I++ K+V+ + A+WC+PC P+Y ++A+KY ++VDE
Sbjct: 6 TLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQ 65
Query: 88 EFSNSWGVTATPTFFFLKDGRQIDKLIGS 116
+ ++ + V PT +G+ +D L+G+
Sbjct: 66 KIADKYSVLNIPTTLIFVNGQLVDSLVGA 94
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 50/84 (59%)
Query: 41 IKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPT 100
+K ++V +F A W C ++ V +LA + P + + ++ + +PE S + +++ PT
Sbjct: 29 LKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPT 88
Query: 101 FFFLKDGRQIDKLIGSNKLELQRK 124
F F K+ ++ID+L G++ EL +K
Sbjct: 89 FLFFKNSQKIDRLDGAHAPELTKK 112
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLT-VDVDELPEFSNSWGVTATPTF 101
DG I+V +F A+WC PCK IAP+ ++AD+Y + + +++D+ P + +G+ TPT
Sbjct: 21 DGAILV-DFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGTPTL 79
Query: 102 FFLKDGR 108
K+G
Sbjct: 80 LLFKNGE 86
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 38 SESIKDGKIVVANFSAQWCSPCKKIAPVYIQLA-DKYPSMICLTVDVDELPEFSNSWGVT 96
++ + K V+ +F A WC PCK +APV ++A ++ + +DVD PE + ++ V
Sbjct: 24 TDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVV 83
Query: 97 ATPTFFFLKDGRQIDKLIGS-NKLELQRKTAAV 128
+ PT KDG+ + +++G+ K L R+ + V
Sbjct: 84 SIPTLILFKDGQPVKRIVGAKGKAALLRELSDV 116
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 50/84 (59%)
Query: 41 IKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPT 100
+K ++V +F A W C ++ V +LA + P + + ++ + +PE S + +++ PT
Sbjct: 35 LKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPT 94
Query: 101 FFFLKDGRQIDKLIGSNKLELQRK 124
F F K+ ++ID+L G++ EL +K
Sbjct: 95 FLFFKNSQKIDRLDGAHAPELTKK 118
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 47 VVANFSAQWCSPCKKIAPVYIQLADKYPSMICL-TVDVDELPEFSNSWGVTATPTFFFLK 105
V+ +F A WC PCK IAPV +LA +Y I + ++ DE P + + + + PT F K
Sbjct: 21 VMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFK 80
Query: 106 DGRQIDKLIGS 116
+G + + +IG+
Sbjct: 81 NGERKESIIGA 91
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 47 VVANFSAQWCSPCKKIAPVYIQLADKYPSMICL-TVDVDELPEFSNSWGVTATPTFFFLK 105
V+ +F A WC PCK IAPV +LA +Y I + ++ DE P + + + + PT F K
Sbjct: 20 VMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFK 79
Query: 106 DGRQIDKLIGS 116
+G + + +IG+
Sbjct: 80 NGERKESIIGA 90
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Query: 20 ASKNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICL 79
+ K +HL T S+E V ++ DG I+V +F A+WC PCK IAP+ ++AD+Y + +
Sbjct: 1 SDKIIHL--TDDSFETDVLKA--DGAILV-DFWAEWCGPCKMIAPILDEIADEYQGKLTV 55
Query: 80 T-VDVDELPEFSNSWGVTATPTFFFLKDGR 108
+++D+ P + +G+ PT K+G
Sbjct: 56 AKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 85
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 29 TMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMI-CLTVDVDELP 87
T +++KV ++ + +F A WC CK IAPV +LA Y L +DVDE P
Sbjct: 9 TDADFDSKVESGVQ-----LVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENP 63
Query: 88 EFSNSWGVTATPTFFFLKDGRQIDKLIG 115
+ + V + PT KDG+ +DK++G
Sbjct: 64 STAAKYEVMSIPTLIVFKDGQPVDKVVG 91
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 29 TMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMI-CLTVDVDELP 87
T +++KV ++ + +F A WC CK IAPV +LA Y L +DVDE P
Sbjct: 10 TDADFDSKVESGVQ-----LVDFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDENP 64
Query: 88 EFSNSWGVTATPTFFFLKDGRQIDKLIG 115
+ + V + PT KDG+ +DK++G
Sbjct: 65 STAAKYEVMSIPTLIVFKDGQPVDKVVG 92
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 32 SWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMI-CLTVDVDELPEFS 90
S+ A+ SE + V+A+F A WC P K IAPV +L + + + +DVDE E +
Sbjct: 10 SFSAETSEGV-----VLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETA 64
Query: 91 NSWGVTATPTFFFLKDGRQIDKLIG 115
+GV + PT LKDG ++ +G
Sbjct: 65 GKYGVMSIPTLLVLKDGEVVETSVG 89
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLT-VDVDELPEFSNSWGVTATPTF 101
DG I+V +F A+WC PCK IAP+ ++AD+Y + + +++D+ P + +G+ PT
Sbjct: 30 DGAILV-DFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTL 88
Query: 102 FFLKDGR 108
K+G
Sbjct: 89 LLFKNGE 95
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 32 SWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMI-CLTVDVDELPEFS 90
S+ A+ SE + V+A+F A WC P K IAPV +L + + + +DVDE E +
Sbjct: 10 SFSAETSEGV-----VLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETA 64
Query: 91 NSWGVTATPTFFFLKDGRQIDKLIG 115
+GV + PT LKDG ++ +G
Sbjct: 65 GKYGVMSIPTLLVLKDGEVVETSVG 89
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Query: 20 ASKNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICL 79
+ K +HL T S++ V ++ DG I+V +F A+WC PCK IAP+ ++AD+Y + +
Sbjct: 1 SDKIIHL--TEDSFDTDVLKA--DGAILV-DFWAEWCGPCKMIAPILDEIADEYQGKLTV 55
Query: 80 T-VDVDELPEFSNSWGVTATPTFFFLKDGR 108
+++D+ P + +G+ PT K+G
Sbjct: 56 AKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 85
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Query: 20 ASKNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICL 79
+ K +HL T S++ V ++ DG I+V +F A+WC PCK IAP+ ++AD+Y + +
Sbjct: 1 SDKIIHL--TDESFDTDVLKA--DGAILV-DFWAEWCGPCKMIAPILDEIADEYQGKLTV 55
Query: 80 T-VDVDELPEFSNSWGVTATPTFFFLKDGR 108
+++D+ P + +G+ PT K+G
Sbjct: 56 AKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 85
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 47 VVANFSAQWCSPCKKIAPVYIQL-ADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFLK 105
VV +F AQWC PCK + P ++ A ++ ++ VD+D+ + + + V+A PT +K
Sbjct: 34 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMK 93
Query: 106 DGRQIDKLIG 115
+G +DK +G
Sbjct: 94 NGDVVDKFVG 103
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 29 TMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMI-CLTVDVDELP 87
T +++KV ++ + +F A C PCK IAPV +LA Y L +DVDE P
Sbjct: 9 TDADFDSKVESGVQ-----LVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENP 63
Query: 88 EFSNSWGVTATPTFFFLKDGRQIDKLIG 115
+ + V + PT KDG+ +DK++G
Sbjct: 64 STAAKYEVMSIPTLIVFKDGQPVDKVVG 91
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLT-VDVDELPEFSNSWGVTATPTF 101
DG I+V +F A+WC PCK IAP+ ++AD+Y + + +++D+ P + +G+ PT
Sbjct: 20 DGAILV-DFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTL 78
Query: 102 FFLKDGR 108
K+G
Sbjct: 79 LLFKNGE 85
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLT-VDVDELPEFSNSWGVTATPTF 101
DG I+V +F A+WC PCK IAP+ ++AD+Y + + +++D+ P + +G+ PT
Sbjct: 20 DGAILV-DFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTL 78
Query: 102 FFLKDGR 108
K+G
Sbjct: 79 LLFKNGE 85
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLT-VDVDELPEFSNSWGVTATPTF 101
DG I+V +F A+WC PCK IAP+ ++AD+Y + + +++D+ P + +G+ PT
Sbjct: 20 DGAILV-DFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTL 78
Query: 102 FFLKDGR 108
K+G
Sbjct: 79 LLFKNGE 85
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Query: 20 ASKNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICL 79
+ K +HL T S++ V ++ DG I+V +F A+WC PCK IAP+ ++AD+Y + +
Sbjct: 1 SDKIIHL--TDDSFDTDVLKA--DGAILV-DFWAEWCGPCKMIAPILDEIADEYQGKLTV 55
Query: 80 T-VDVDELPEFSNSWGVTATPTFFFLKDGR 108
+++D+ P + +G+ PT K+G
Sbjct: 56 AKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 85
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLT-VDVDELPEFSNSWGVTATPTF 101
DG I+V +F A+WC PCK IAP+ ++AD+Y + + +++D+ P + +G+ + PT
Sbjct: 20 DGAILV-DFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRSIPTL 78
Query: 102 FFLKDGR 108
K+G
Sbjct: 79 LLFKNGE 85
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLT-VDVDELPEFSNSWGVTATPTF 101
DG I+V +F A+WC PCK IAP+ ++AD+Y + + +++D+ P + +G+ PT
Sbjct: 20 DGAILV-DFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTL 78
Query: 102 FFLKDGR 108
K+G
Sbjct: 79 LLFKNGE 85
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Query: 20 ASKNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICL 79
+ K +HL T S++ V ++ DG I+V +F A+WC PCK IAP+ ++AD+Y + +
Sbjct: 1 SDKIIHL--TDDSFDTDVLKA--DGAILV-DFWAEWCGPCKMIAPILDEIADEYQGKLTV 55
Query: 80 T-VDVDELPEFSNSWGVTATPTFFFLKDGR 108
+++D+ P + +G+ PT K+G
Sbjct: 56 AKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 85
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 6/89 (6%)
Query: 20 ASKNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICL 79
+ K +HL T S++ V ++ DG I+V +F A+WC PCK IAP+ ++AD+Y + +
Sbjct: 1 SDKIIHL--TDDSFDTDVLKA--DGAILV-DFWAEWCGPCKMIAPILDEIADEYQGKLTV 55
Query: 80 T-VDVDELPEFSNSWGVTATPTFFFLKDG 107
+++D+ P + +G+ PT K+G
Sbjct: 56 AKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Query: 20 ASKNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICL 79
+ K +HL T S++ V ++ DG I+V +F A+WC PCK IAP+ ++AD+Y + +
Sbjct: 1 SDKIIHL--TDDSFDTDVLKA--DGAILV-DFWAEWCGPCKMIAPILDEIADEYQGKLTV 55
Query: 80 T-VDVDELPEFSNSWGVTATPTFFFLKDGR 108
+++D+ P + +G+ PT K+G
Sbjct: 56 AKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 85
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 6/90 (6%)
Query: 20 ASKNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICL 79
+ K +HL T S++ V ++ DG I+V +F A+WC PCK IAP+ ++AD Y + +
Sbjct: 1 SDKIIHL--TDDSFDTDVLKA--DGAILV-DFWAEWCGPCKMIAPILDEIADDYQGKLTV 55
Query: 80 T-VDVDELPEFSNSWGVTATPTFFFLKDGR 108
+++D+ P + +G+ PT K+G
Sbjct: 56 AKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 85
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Query: 20 ASKNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICL 79
+ K +HL T S++ V ++ DG I+V +F A+WC PCK IAP+ ++AD+Y + +
Sbjct: 1 SDKIIHL--TDDSFDTDVLKA--DGAILV-DFWAEWCGPCKMIAPILDEIADEYQGKLTV 55
Query: 80 T-VDVDELPEFSNSWGVTATPTFFFLKDGR 108
+++D+ P + +G+ PT K+G
Sbjct: 56 AKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 85
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 6/90 (6%)
Query: 20 ASKNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICL 79
+ K +HL T S++ V ++ DG I+V +F A+WC PCK IAP+ +AD+Y + +
Sbjct: 1 SDKIIHL--TDDSFDTDVLKA--DGAILV-DFWAEWCGPCKMIAPILDDIADEYQGKLTV 55
Query: 80 T-VDVDELPEFSNSWGVTATPTFFFLKDGR 108
+++D+ P + +G+ PT K+G
Sbjct: 56 AKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 85
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Query: 20 ASKNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICL 79
+ K +HL T S++ V ++ DG I+V +F A+WC PC+ IAP+ ++AD+Y + +
Sbjct: 1 SDKIIHL--TDDSFDTDVLKA--DGAILV-DFWAEWCGPCEMIAPILDEIADEYQGKLTV 55
Query: 80 T-VDVDELPEFSNSWGVTATPTFFFLKDGR 108
+++D+ P + +G+ PT K+G
Sbjct: 56 AKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 85
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 38 SESIKDGKIVVANFSAQWCSPCKKIAPVYIQLA-DKYPSMICLTVDVDELPEFSNSWGVT 96
++ + K V+ +F A WC P K +APV ++A ++ + +DVD PE + ++ V
Sbjct: 21 TDVLSSNKPVLVDFWATWCGPSKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVV 80
Query: 97 ATPTFFFLKDGRQIDKLIGS-NKLELQRKTAAV 128
+ PT KDG+ + +++G+ K L R+ + V
Sbjct: 81 SIPTLILFKDGQPVKRIVGAKGKAALLRELSDV 113
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLT-VDVDELPEFSNSWGVTATPTF 101
DG I+V +F A+WC PCK IAP+ ++A++Y + + +++D+ P + +G+ PT
Sbjct: 20 DGAILV-DFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTL 78
Query: 102 FFLKDGR 108
K+G
Sbjct: 79 LLFKNGE 85
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 47 VVANFSAQWCSPCKKIAPVYIQLADKYPSMICL-TVDVDELPEFSNSWGVTATPTFFFLK 105
V+ +F A WC P K IAPV +LA +Y I + ++ DE P + + + + PT F K
Sbjct: 21 VMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFK 80
Query: 106 DGRQIDKLIGS 116
+G + + +IG+
Sbjct: 81 NGERKESIIGA 91
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 45 KIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICL-TVDVDELPEFSNSWGVTATPTFFF 103
K + +F A WC PCK +AP+ +L+ +Y I + V+VD+ PE + +G+ PT +F
Sbjct: 52 KPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQGIPTIWF 111
Query: 104 L 104
+
Sbjct: 112 V 112
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 45 KIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICL-TVDVDELPEFSNSWGVTATPTFFF 103
K + +F A WC PCK +AP+ +L+ +Y I + V+VD+ PE + +G+ + PT +F
Sbjct: 52 KPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTIWF 111
Query: 104 L 104
+
Sbjct: 112 V 112
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 29 TMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMI-CLTVDVDELP 87
T +++KV ++ + +F A WC K IAPV +LA Y L +DVDE P
Sbjct: 10 TDADFDSKVESGVQ-----LVDFWATWCGTSKMIAPVLEELAADYEGKADILKLDVDENP 64
Query: 88 EFSNSWGVTATPTFFFLKDGRQIDKLIG 115
+ + V + PT KDG+ +DK++G
Sbjct: 65 STAAKYEVMSIPTLIVFKDGQPVDKVVG 92
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLT-VDVDELPEFSNSWGVTATPTF 101
DG I+V +F A+WC P K IAP+ ++AD+Y + + +++D+ P + +G+ PT
Sbjct: 40 DGAILV-DFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTL 98
Query: 102 FFLKDGR 108
K+G
Sbjct: 99 LLFKNGE 105
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 45 KIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVD-ELPEFSNSWGVTATPTFFF 103
K VV + QWC PCK +AP Y +LA++Y +I L +D + E + G+ PTF
Sbjct: 38 KPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKI 97
Query: 104 LKDGRQIDKLIGS 116
LK+ + ++ G+
Sbjct: 98 LKENSVVGEVTGA 110
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLT-VDVDELPEFSNSWGVTATPTF 101
DG I+V +F A+WC CK IAP+ ++AD+Y + + +++D+ P + +G+ PT
Sbjct: 20 DGAILV-DFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTL 78
Query: 102 FFLKDGR 108
K+G
Sbjct: 79 LLFKNGE 85
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLT-VDVDELPEFSNSWGVTATPTF 101
DG I+V +F A+WC P K IAP+ ++AD+Y + + +++D+ P + +G+ PT
Sbjct: 20 DGAILV-DFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTL 78
Query: 102 FFLKDGR 108
K+G
Sbjct: 79 LLFKNGE 85
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 45 KIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVD-ELPEFSNSWGVTATPTFFF 103
K VV + QWC PCK +AP Y +LA++Y +I L +D + E + G+ PTF
Sbjct: 26 KPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKI 85
Query: 104 LKDGRQIDKLIGS 116
LK+ + ++ G+
Sbjct: 86 LKENSVVGEVTGA 98
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLT-VDVDELPEFSNSWGVTATPTF 101
DG I+V +F A+WC PCK IA + ++AD+Y + + +++D+ P + +G+ PT
Sbjct: 20 DGAILV-DFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTL 78
Query: 102 FFLKDGR 108
K+G
Sbjct: 79 LLFKNGE 85
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 47/76 (61%), Gaps = 4/76 (5%)
Query: 46 IVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFL- 104
+V+ +F A WC PC+++ + +A+ + + VDVD+ ++++GV++ P FF+
Sbjct: 25 LVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNAADAYGVSSIPALFFVK 84
Query: 105 KDGRQI---DKLIGSN 117
K+G +I D+ +G++
Sbjct: 85 KEGNEIKTLDQFVGAD 100
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 34 EAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLA-DKYPSMICLTVDVDELPEFSNS 92
E ++ + + + +F A WC PC+ ++P+ +LA D + + V+VDE P +
Sbjct: 40 EKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAAR 99
Query: 93 WGVTATPTFFFLKDGRQIDKLIGSN 117
+GV + PT + G + +G++
Sbjct: 100 YGVRSVPTLVLFRRGAPVATWVGAS 124
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 7/91 (7%)
Query: 20 ASKNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCS-PCKKIAPVYIQLADKYPSMIC 78
+ K +HL T S++ V ++ DG I+V +F A+WC PCK IAP+ ++AD+Y +
Sbjct: 1 SDKIIHL--TDDSFDTDVLKA--DGAILV-DFWAEWCGRPCKMIAPILDEIADEYQGKLT 55
Query: 79 LT-VDVDELPEFSNSWGVTATPTFFFLKDGR 108
+ +++D+ P + +G+ PT K+G
Sbjct: 56 VAKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 86
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%)
Query: 46 IVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFLK 105
+ VA F+A WC PCK I ++A ++P++ VD D E + V PTF +
Sbjct: 39 LTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRVLQLPTFIIAR 98
Query: 106 DGRQIDKLIGSNKLELQRKTAAVSK 130
G+ + +IG+N L++K + K
Sbjct: 99 SGKMLGHVIGANPGMLRQKLRDIIK 123
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLT-VDVDELPEFSNSWGVTATPTF 101
DG I+V +F A+WC CK IAP+ ++AD+Y + + +++D+ P + +G+ PT
Sbjct: 20 DGAILV-DFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTL 78
Query: 102 FFLKDGR 108
K+G
Sbjct: 79 LLFKNGE 85
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 45 KIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICL-TVDVDELPEFSNSWGVTATPTFFF 103
K + +F A WC PCK +AP+ +LA +Y I + VD ++ E + ++G+ + P+ F
Sbjct: 39 KPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIPSILF 98
Query: 104 L 104
+
Sbjct: 99 I 99
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 25 HLITTM--VSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMI-CLTV 81
H+ T+ V+ ++ + +K+ K V+ +F A WC PC++IAP +A +Y I + +
Sbjct: 2 HMAGTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKL 61
Query: 82 DVDELPEFSNSWGVTATPTFFFLKDGRQIDKLIGS 116
++DE P + +GV + PT + G ++G+
Sbjct: 62 NIDENPGTAAKYGVMSIPTLNVYQGGEVAKTIVGA 96
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLT-VDVDELPEFSNSWGVTATPTF 101
DG I+V +F A+WC PCK IAP+ ++AD+Y + + +++D+ P + + PT
Sbjct: 20 DGAILV-DFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYIERGIPTL 78
Query: 102 FFLKDGR 108
K+G
Sbjct: 79 LLFKNGE 85
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 45 KIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVD-ELPEFSNSWGVTATPTFFF 103
K VV + QWC P K +AP Y +LA++Y +I L +D + E + G+ PTF
Sbjct: 25 KPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKI 84
Query: 104 LKDGRQIDKLIGS 116
LK+ + ++ G+
Sbjct: 85 LKENSVVGEVTGA 97
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLT-VDVDELPEFSNSWGVTATPTF 101
DG I+V +F A+WC+ K IAP+ ++AD+Y + + +++D+ P + +G+ PT
Sbjct: 20 DGAILV-DFWAEWCACAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTL 78
Query: 102 FFLKDGR 108
K+G
Sbjct: 79 LLFKNGE 85
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 29 TMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVY----IQLADKYPSMICLTVDVD 84
T+V + E + D I++ F A WC CKK+AP Y +L+ + P + VD
Sbjct: 132 TLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDAT 191
Query: 85 ELPEFSNSWGVTATPTFFFLKDGRQID 111
+ + + V+ PT + GR D
Sbjct: 192 AETDLAKRFDVSGYPTLKIFRKGRPYD 218
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Query: 30 MVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLA----DKYPSMICLTVDVDE 85
+V +A + D V+ F A WC CK+ AP Y ++A DK P + +D
Sbjct: 18 LVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATS 77
Query: 86 LPEFSNSWGVTATPTFFFLKDGRQIDKLIGSNKLELQRKTAAVSK 130
++ + V+ PT LK G+ +D + E+ K VS+
Sbjct: 78 ASVLASRFDVSGYPTIKILKKGQAVDYEGSRTQEEIVAKVREVSQ 122
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 20/105 (19%)
Query: 19 FASKNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSP--------------CKKIAP 64
+ K +HL T S++ V ++ DG I+V +F A+WC P CK IAP
Sbjct: 1 MSDKIIHL--TDDSFDTDVLKA--DGAILV-DFWAEWCGPIEESDDRRYDLVGPCKMIAP 55
Query: 65 VYIQLADKYPSMICLT-VDVDELPEFSNSWGVTATPTFFFLKDGR 108
+ ++AD+Y + + +++D+ P + +G+ PT K+G
Sbjct: 56 ILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 100
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 32 SWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLT-VDVDELPEFS 90
++E+++S++ G ++V F A WC CK++AP Y A + ++ L VD
Sbjct: 10 NFESRISDTGSAGLMLV-EFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVDCTANTNTC 68
Query: 91 NSWGVTATPTFFFLKDGRQIDKLIG 115
N +GV+ PT +DG + G
Sbjct: 69 NKYGVSGYPTLKIFRDGEEAGAYDG 93
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 41 IKDGKIVVANFSAQWCSPCKKIAPVY----IQLADKYPSMICLTVDVDELPEFSNSWGVT 96
+ + I++ F A WC CKK+AP Y +L+ + P + VD E + + + V+
Sbjct: 21 VNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQTDLAKRFDVS 80
Query: 97 ATPTFFFLKDGRQID 111
PT + GR D
Sbjct: 81 GYPTLKIFRKGRPFD 95
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 41 IKDGKIVVANFSAQWCSPCKKIAPVYIQL-ADKYPSMICLTVDVDELPEFSNSWGVTATP 99
++D V +F A WC PC+ AP++ + A++ + + V+ + P S + + + P
Sbjct: 52 LQDDLPXVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIP 111
Query: 100 TFFFLKDGRQIDKLIGS 116
T ++G+ ID L G+
Sbjct: 112 TIXLYRNGKXIDXLNGA 128
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 30 MVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP---SMICLT-VDVDE 85
+V ++ +E++ K ++ F A WC CK +AP Y + A K S I L VD E
Sbjct: 10 LVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE 69
Query: 86 LPEFSNSWGVTATPTFFFLKDG 107
+ + +GV PT F ++G
Sbjct: 70 ESDLAQQYGVRGYPTIKFFRNG 91
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Query: 23 NVHLITTMVSW--EAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLT 80
LIT V+ A ++ + +D ++ +F A WC PC+++AP + A + L
Sbjct: 41 GAGLITGKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLA 100
Query: 81 -VDVDELPEFSNSWGVTATPTFFFLKDGRQIDKLIGSN 117
+D P + + P F GR++ + G+
Sbjct: 101 KIDTQAHPAVAGRHRIQGIPAFILFHKGRELARAAGAR 138
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 41 IKDGKIVVANFSAQWCSPCKKIAPVYIQLA----DKYPSMICLTVDVDELPEFSNSWGVT 96
+ D V+ F A WC CK+ AP Y ++A D P + +D ++ + V+
Sbjct: 31 VADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVS 90
Query: 97 ATPTFFFLKDGRQIDKLIGSNKLELQRKTAAVSK 130
PT LK G+ +D + E+ K VS+
Sbjct: 91 GYPTIKILKKGQAVDYDGSRTQEEIVAKVREVSQ 124
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 26 LITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLT-VDVD 84
L T ++E+++S++ G ++V F A WC K++AP Y A + ++ L VD
Sbjct: 4 LELTDDNFESRISDTGSAGLMLV-EFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCT 62
Query: 85 ELPEFSNSWGVTATPTFFFLKDGRQIDKLIG 115
N +GV+ PT +DG + G
Sbjct: 63 ANTNTCNKYGVSGYPTLKIFRDGEEAGAYDG 93
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKY---PSMICLTVD--VDELPEFSNSWGVTA 97
+ K V+ F A WC CK + P Y +L +K P+++ +D +++P + + V
Sbjct: 369 ENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVP---SPYEVRG 425
Query: 98 TPTFFF 103
PT +F
Sbjct: 426 FPTIYF 431
>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
Length = 112
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 45 KIVVANFSAQWCSPCKKIAPVYIQLADKYPS---MICLTVDVDELPEFSNSWGVTATPTF 101
K++V F W PCK + V+ ++++ PS + L++D DE E S + ++A P F
Sbjct: 22 KLIVLYFHTSWAEPCKALKQVFEAISNE-PSNSNVSFLSIDADENSEISELFEISAVPYF 80
Query: 102 FFLKDGRQIDKLIGSNKLE 120
+ G + +L G++ E
Sbjct: 81 IIIHKGTILKELSGADPKE 99
>pdb|3CXG|A Chain A, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
pdb|3CXG|B Chain B, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
Length = 133
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 36 KVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGV 95
+V S ++ IV+ F A WC PC KI Y + Y + + +DVD P+ ++ +
Sbjct: 33 QVFSSTQNSSIVIK-FGAVWCKPCNKIKE-YFKNQLNYYYVTLVDIDVDIHPKLNDQHNI 90
Query: 96 TATPTFFF 103
A PTF F
Sbjct: 91 KALPTFEF 98
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 28 TTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADK-YPSMICLTV-DVDE 85
T + E ++I +G I F A WC CK +AP + +L+ K +P + + + +VD
Sbjct: 1 TVLALTENNFDDTIAEG-ITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDC 59
Query: 86 LPE--FSNSWGVTATPTFFFLKDGRQIDKLIGSNKLE 120
E + + V PT + G+++ + G L+
Sbjct: 60 TAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLD 96
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 28 TTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADK-YPSMICLTV-DVDE 85
T + E ++I +G I F A WC CK +AP + +L+ K +P + + + +VD
Sbjct: 6 TVLALTENNFDDTIAEG-ITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDC 64
Query: 86 LPE--FSNSWGVTATPTFFFLKDGRQIDKLIGSNKLE 120
E + + V PT + G+++ + G L+
Sbjct: 65 TAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLD 101
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 28 TTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADK-YPSMICLTV-DVDE 85
T + E ++I +G I F A WC CK +AP + +L+ K +P + + + +VD
Sbjct: 8 TVLALTENNFDDTIAEG-ITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDC 66
Query: 86 LPE--FSNSWGVTATPTFFFLKDGRQIDKLIGSNKLE 120
E + + V PT + G+++ + G L+
Sbjct: 67 TAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLD 103
>pdb|2LUS|A Chain A, Nmr Structure Of Carcinoscorpius Rotundicauda
Thioredoxin Related Protein 16 And Its Role In
Regulating Transcription Factor Nf-Kb Activity
Length = 143
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 34 EAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMI 77
E +E++KD I+ FSA WC PC+ P+ LAD Y ++
Sbjct: 16 EVNANEALKDKDIIGFYFSAHWCPPCRGFTPI---LADMYSELV 56
>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 158
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKYP--SMICLTVDVDE-LPEFSNSWGVTATPT 100
GKIV+ NF A WC C+ P +L +P ++ L V+V++ PE A +
Sbjct: 41 GKIVLVNFWASWCPYCRDEXPSXDRLVKSFPKGDLVVLAVNVEKRFPEKYRR----APVS 96
Query: 101 FFFLKDGR-QIDKLIGSNKL 119
F FL D Q+ + G+N+L
Sbjct: 97 FNFLSDATGQVQQRYGANRL 116
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 45 KIVVANFSAQWCSPCKKIAPVYIQLADKYPS---MICLTVDVDELPEFSNSWGVTATPTF 101
K V+ F A WC CK++ P+Y L KY ++ +D ++ + V PT
Sbjct: 26 KDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTI 85
Query: 102 FFLKDGRQID--KLIGSNK 118
+F G + + K G N+
Sbjct: 86 YFAPSGDKKNPIKFEGGNR 104
>pdb|2L6C|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Oxidized
Form
pdb|2L6D|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Reduced Form
Length = 110
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 51 FSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFLKDGRQI 110
F C CK + V + + P + +VD + PE G PT F++DG+
Sbjct: 26 FHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSEARPELMKELGFERVPTLVFIRDGKVA 85
Query: 111 DKLIG-SNKLELQRKTAAV 128
G N ELQ A++
Sbjct: 86 KVFSGIMNPRELQALYASI 104
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 32 SWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLT-VDVDELPEFS 90
+W +V +S K VV F + C CK P + + A +Y S +++ P +
Sbjct: 15 TWSQQVEDSKKP---VVVXFYSPACPYCKAXEPYFEEYAKEYGSSAVFGRINIATNPWTA 71
Query: 91 NSWGVTATPTFFFLKDGRQIDKLIG 115
+GV TPTF F GR + + +G
Sbjct: 72 EKYGVQGTPTFKFFCHGRPVWEQVG 96
>pdb|1ZZO|A Chain A, Structure Of Mtb Dsbf In Its Oxidized Form
Length = 136
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 24/110 (21%)
Query: 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTV-DVDELP---EFSNSW------ 93
GK V F A WC C+ APV Q+A +P + + V +D++P EF N +
Sbjct: 25 GKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFT 84
Query: 94 -------------GVTATPTFFFLKDGRQIDKLIGS-NKLELQRKTAAVS 129
GVT P + F+ +D + G ++ EL R+ A++
Sbjct: 85 QLADTDGSVWANFGVTQQPAYAFVDPHGNVDVVRGRMSQDELTRRVTALT 134
>pdb|3IOS|A Chain A, Structure Of Mtb Dsbf In Its Mixed Oxidized And Reduced
Forms
Length = 150
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 24/110 (21%)
Query: 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTV-DVDELP---EFSNSW------ 93
GK V F A WC C+ APV Q+A +P + + V +D++P EF N +
Sbjct: 39 GKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFT 98
Query: 94 -------------GVTATPTFFFLKDGRQIDKLIGS-NKLELQRKTAAVS 129
GVT P + F+ +D + G ++ EL R+ A++
Sbjct: 99 QLADTDGSVWANFGVTQQPAYAFVDPHGNVDVVRGRMSQDELTRRVTALT 148
>pdb|1OKD|A Chain A, Nmr-Structure Of Tryparedoxin 1
Length = 154
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKY 73
GK+V FSA WC PC+ P I+ DK+
Sbjct: 28 GKLVFFYFSASWCPPCRGFTPQLIEFYDKF 57
>pdb|1EZK|A Chain A, Crystal Structure Of Recombinant Tryparedoxin I
Length = 153
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKY 73
GK+V FSA WC PC+ P I+ DK+
Sbjct: 27 GKLVFFYFSASWCPPCRGFTPQLIEFYDKF 56
>pdb|1QK8|A Chain A, Tryparedoxin-I From Crithidia Fasciculata
pdb|1O7U|A Chain A, Radiation Induced Tryparedoxin-I
pdb|1O85|A Chain A, Radiation-Reduced Tryparedoxin-I
pdb|1O8W|A Chain A, Radiation-Reduced Tryparedoxin-I
Length = 146
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKY 73
GK+V FSA WC PC+ P I+ DK+
Sbjct: 28 GKLVFFYFSASWCPPCRGFTPQLIEFYDKF 57
>pdb|1EWX|A Chain A, Crystal Structure Of Native Tryparedoxin I From
Crithidia Fasciculata
Length = 146
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKY 73
GK+V FSA WC PC+ P I+ DK+
Sbjct: 28 GKLVFFYFSASWCPPCRGFTPQLIEFYDKF 57
>pdb|3GNJ|A Chain A, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|B Chain B, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|C Chain C, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|D Chain D, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
Length = 111
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKY-PSMICLTVDVDELPEFSNSWGVTATPTF 101
+GK + FS + C C+K+ PV +L Y S VDV+E + + P
Sbjct: 21 EGKACLVXFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLKGVPQI 80
Query: 102 FFLKDGRQIDKLIGS 116
+ KDG K G
Sbjct: 81 LYFKDGEYKGKXAGD 95
>pdb|1O73|A Chain A, Tryparedoxin From Trypanosoma Brucei
Length = 144
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 28 TTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKY 73
T ++S +VS GK V FSA WC PC+ PV + +K+
Sbjct: 12 TNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKH 57
>pdb|2KUC|A Chain A, Solution Structure Of A Putative Disulphide-Isomerase From
Bacteroides Thetaiotaomicron
Length = 130
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 34 EAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQ---LADKY-PSMICLTVDVD--ELP 87
EA ++D + V F+ WC PCK+++ V + +AD + + L +D++ E
Sbjct: 18 EALKRAEVEDKLLFVDCFTT-WCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGV 76
Query: 88 EFSNSWGVTATPTFFFLK-DGRQIDKLIGSN 117
E +GV A PT F+ G + +L+G+
Sbjct: 77 ELRKKYGVHAYPTLLFINSSGEVVYRLVGAE 107
>pdb|1PQN|A Chain A, Dominant Negative Human Hdim1 (Hdim1 1-128)
Length = 127
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 32 SWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSM-ICLTVDVDELPEFS 90
W+ + ++ ++VV F W C K+ V +A+K + + VD+ E+P+F+
Sbjct: 10 GWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFN 69
Query: 91 NSWGVT--ATPTFFFLKDGRQIDKLIGSNK 118
+ + T FFF ID G+N
Sbjct: 70 KMYELYDPCTVMFFFRNKHIMIDLGTGNNN 99
>pdb|1QGV|A Chain A, Human Spliceosomal Protein U5-15kd
pdb|1SYX|A Chain A, The Crystal Structure Of A Binary U5 Snrnp Complex
pdb|1SYX|C Chain C, The Crystal Structure Of A Binary U5 Snrnp Complex
pdb|1SYX|E Chain E, The Crystal Structure Of A Binary U5 Snrnp Complex
Length = 142
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 32 SWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSM-ICLTVDVDELPEFS 90
W+ + ++ ++VV F W C K+ V +A+K + + VD+ E+P+F+
Sbjct: 11 GWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFN 70
Query: 91 NSWGVT--ATPTFFFLKDGRQIDKLIGSN 117
+ + T FFF ID G+N
Sbjct: 71 KMYELYDPCTVMFFFRNKHIMIDLGTGNN 99
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 45 KIVVANFSAQWCSPCKKIAPVYIQLADKYPSMI--CLTVDVDELPEFSNSWGVTATPTFF 102
K V+ + A WC CK++AP Y +LAD Y + L +D + PT
Sbjct: 377 KDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGVVIEGYPTIV 436
Query: 103 FLKDGRQIDKLI--GSNKLE 120
G++ + ++ GS L+
Sbjct: 437 LYPGGKKSESVVYQGSRSLD 456
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 38 SESIKDGKIVVANFSAQWCSPCKKIAPVYIQLAD 71
+E I+ +V+A F A WC CK +AP Y++ A+
Sbjct: 25 NEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAE 58
>pdb|3EMX|A Chain A, Crystal Structure Of Thioredoxin From Aeropyrum Pernix
pdb|3EMX|B Chain B, Crystal Structure Of Thioredoxin From Aeropyrum Pernix
Length = 135
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 91 NSWGVTATPTFFFLKDGRQIDKLIGSNKLELQRKTA 126
N GV TPT F K+GR +DKL+G+ L+ + A
Sbjct: 86 NKAGVEGTPTLVFYKEGRIVDKLVGATPWSLKVEKA 121
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 38 SESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMI-CLTVDVDELPEFSNSWGVT 96
SE +K + V+ F A WC PC+ ++P+ A+ Y + + +++D P + V
Sbjct: 19 SEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVE 78
Query: 97 ATPTFFFLKDGRQI 110
P +K G QI
Sbjct: 79 GVPALRLVK-GEQI 91
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/104 (18%), Positives = 48/104 (46%), Gaps = 12/104 (11%)
Query: 37 VSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLAD----KYPS---MICLTVDVDELPEF 89
+ E + + + + NF A WC + + P++ + +D ++P+ ++ VD D+ +
Sbjct: 15 IDEILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDI 74
Query: 90 SNSWGVTATPTFFFLKDGRQIDKLIGSNKLELQRKTAAVSKLLR 133
+ + ++ PT ++G + + QR A++ +R
Sbjct: 75 AQRYRISKYPTLKLFRNGXXXKR-----EYRGQRSVKALADYIR 113
>pdb|3KCM|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|B Chain B, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|C Chain C, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|D Chain D, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|E Chain E, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|F Chain F, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 154
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 44 GKIVVANFSAQWCSPCKKIAPVYIQL----ADKYPSMICLTVD 82
G++V+ NF A WC PC++ P +L A K +C+++D
Sbjct: 28 GQVVIVNFWATWCPPCREEIPSXXRLNAAXAGKPFRXLCVSID 70
>pdb|1KNG|A Chain A, Crystal Structure Of Ccmg Reducing Oxidoreductase At 1.14
A
Length = 156
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 23/95 (24%)
Query: 44 GKIVVANFSAQWCSPCKKIAPVYIQLA-DKYPSMICLT---------------------V 81
GK+ + N A WC PC AP+ +L DK ++ + V
Sbjct: 42 GKVSLVNVWASWCVPCHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRV 101
Query: 82 DVDELPEFSNSWGVTATP-TFFFLKDGRQIDKLIG 115
VD S WGV P TF ++G + KL+G
Sbjct: 102 GVDANGRASIEWGVYGVPETFVVGREGTIVYKLVG 136
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 46 IVVANFSAQWCSPCKKIAPVYIQLADKYPSMI-CLTVDVDELPEFSNSWGVTATPTFFFL 104
++V F A+WC C + +L Y I L VD+D+ + + V + PT L
Sbjct: 44 VIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLPTIILL 103
Query: 105 KDGRQI---DKLIGSNKL 119
K+ + D + SN L
Sbjct: 104 KNKTMLARKDHFVSSNDL 121
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKY---PSMICLTVD--VDELPEFSNSWGVTA 97
+ K V+ F A WC CK + P Y +L +K P+++ +D +++P + + V
Sbjct: 44 ENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVP---SPYEVRG 100
Query: 98 TPTFFFLKDGRQID--KLIGSNKLE-----LQRKTAA 127
PT +F ++++ K G +L LQR+ +
Sbjct: 101 FPTIYFSPANKKLNPKKYEGGRELSDFISYLQREATS 137
>pdb|1O8X|A Chain A, Mutant Tryparedoxin-I Cys43ala
Length = 146
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKY 73
GK+V FSA WC P + P I+ DK+
Sbjct: 28 GKLVFFYFSASWCPPARGFTPQLIEFYDKF 57
>pdb|3S9F|A Chain A, The Structure Of Tryparedoxin I From Leishmania Major
Length = 165
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKY 73
GK V FSA WC PC+ P ++ +K+
Sbjct: 48 GKTVFFYFSASWCPPCRGFTPQLVEFYEKH 77
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 20 ASKNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMIC- 78
+S NV +IT +W + +G ++ F A WC C+ + P + A+ +
Sbjct: 5 SSGNVRVITDE-NWR-----ELLEGDWMI-EFYAPWCPACQNLQPEWESFAEWGEDLEVN 57
Query: 79 -LTVDVDELPEFSNSWGVTATPTFFFLKDGR 108
VDV E P S + + A PT + KDG
Sbjct: 58 IAKVDVTEQPGLSGRFIINALPTIYHCKDGE 88
>pdb|2LST|A Chain A, Solution Structure Of A Thioredoxin From Thermus
Thermophilus
Length = 130
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 43 DGKIVVANFSAQWCSPCKKIA------PVYIQLADKYPSMICLTVDVDELPEFSNSWGVT 96
G++V+ F ++ C C+++ P +L + + ++VD E E + + V
Sbjct: 18 HGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVP 77
Query: 97 ATPTFFFL--KDG--RQIDKLIGSN 117
TPTF FL K G ++ +L GS
Sbjct: 78 GTPTFVFLVPKAGAWEEVGRLFGSR 102
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 33.9 bits (76), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 59 CKKIAPVYIQLADKYPSMICLT-VDVDELPEFSNSWGVTATPTFFFLKDGRQIDKLIG 115
C ++ PV LA +Y L +D D + +G+ A PT + ++G+ +D G
Sbjct: 41 CLQLTPVLESLAAQYHGQFILAKLDCDAEQXIAAQFGLRAIPTVYLFQNGQPVDGFQG 98
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 33.9 bits (76), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 47 VVANFSAQWCSPCKKIAPVYIQLADKYPSMICLT-VDVDELPEFSNSWGVTATPTFFFLK 105
++ F+ WC PCKK+ P + ++A + I +D ++ + + P+
Sbjct: 20 IIIMFTGSWCQPCKKMKPTFEEMASQMEGDIRFAYMDAEDAEKTMAELNIRTLPSLALFV 79
Query: 106 DG 107
DG
Sbjct: 80 DG 81
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 45 KIVVANFSAQWCSPCKKIAPVYIQLADKY 73
K V F A WC CK++AP++ +L + Y
Sbjct: 268 KNVFVEFYAPWCGHCKQLAPIWDKLGETY 296
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 38 SESIKDGKIV-VANFSAQWCSPCKKIAPVYIQLADKYPSMI-CLTVDVDELPEFSNSWGV 95
+E + GK V +F A WC PC+ AP + LA + VD P+ G+
Sbjct: 14 NEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGI 73
Query: 96 TATPT 100
A P+
Sbjct: 74 KAYPS 78
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 45 KIVVANFSAQWCSPCKKIAPVYIQLADKY 73
K V F A WC CK++AP++ +L + Y
Sbjct: 26 KNVFVEFYAPWCGHCKQLAPIWDKLGETY 54
>pdb|1OC9|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 32.7 bits (73), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKY 73
GK V FSA WC PC+ P QL D Y
Sbjct: 31 GKTVFFYFSASWCPPCRAFTP---QLIDFY 57
>pdb|1O6J|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
pdb|1O6J|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
Length = 150
Score = 32.7 bits (73), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKY 73
GK V FSA WC PC+ P QL D Y
Sbjct: 29 GKTVFFYFSASWCPPCRAFTP---QLIDFY 55
>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn
Length = 287
Score = 32.7 bits (73), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 59 CKKIAPVYIQLADKYPSMICLT-VDVDELPEFSNSWGVTATPTFFFLKDGRQIDKLIG 115
C ++ P+ LA +Y L +D D + +G+ A PT + ++G+ +D G
Sbjct: 41 CLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQG 98
>pdb|1O81|A Chain A, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1O81|B Chain B, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1OC9|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 32.7 bits (73), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKY 73
GK V FSA WC PC+ P QL D Y
Sbjct: 31 GKTVFFYFSASWCPPCRAFTP---QLIDFY 57
>pdb|1FG4|A Chain A, Structure Of Tryparedoxin Ii
pdb|1FG4|B Chain B, Structure Of Tryparedoxin Ii
Length = 149
Score = 32.7 bits (73), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKY 73
GK V FSA WC PC+ P QL D Y
Sbjct: 28 GKTVFFYFSASWCPPCRAFTP---QLIDFY 54
>pdb|3ERW|A Chain A, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|B Chain B, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|C Chain C, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|D Chain D, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|E Chain E, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|F Chain F, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|G Chain G, Crystal Structure Of Stoa From Bacillus Subtilis
Length = 145
Score = 32.3 bits (72), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKYPS 75
G+ + +F WC PCKK P + D +PS
Sbjct: 34 GQKTILHFWTSWCPPCKKELPQFQSFYDAHPS 65
>pdb|2DJ0|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Related Transmembrane Protein 2
Length = 137
Score = 32.3 bits (72), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 14/79 (17%)
Query: 48 VANFSAQWCSPCKKIAPVYIQLADKY--PSMICLTVDVDELPEFSNSWGVTAT------P 99
+ F A W + C+ AP+Y L+ KY + VDV + S + V+ + P
Sbjct: 30 IVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLP 89
Query: 100 TFFFLKDGR------QIDK 112
T + G+ QIDK
Sbjct: 90 TLILFQGGKEAMRRPQIDK 108
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 32.3 bits (72), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 44 GKIVVANFSAQWCSPCKKIAP-----VYIQLADKYPSMICLTVDVDELPE----FSNSWG 94
GK+V+ F+A WC C+K P ++++ D + +D DE E F+ S G
Sbjct: 33 GKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDN-ADFALIGIDRDEPLEKVLAFAKSTG 91
Query: 95 VT 96
VT
Sbjct: 92 VT 93
>pdb|3OR5|A Chain A, Crystal Structure Of Thiol:disulfide Interchange
Protein, Thioredoxin Family Protein From Chlorobium
Tepidum Tls
Length = 165
Score = 32.0 bits (71), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 38 SESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDV---DELPEFSN 91
S S+K GK + NF A WC PC+ P +Q+ + S V + ++LP N
Sbjct: 29 SASLK-GKAYIVNFFATWCPPCRSEIPDXVQVQKTWASRGFTFVGIAVNEQLPNVKN 84
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic
Fungal Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic
Fungal Protein Disulfide Isomerase
Length = 121
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 41 IKDGKIVVANFSAQWCSPCKKIAPVYIQLADKY 73
+ D K V+ F A WC CK +AP Y +L Y
Sbjct: 22 LDDTKDVLIEFYAPWCGHCKALAPKYEELGALY 54
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKY--PSMICLTVDVD 84
GK ++ N A WC PC+K P +L K P+ + +++D
Sbjct: 60 GKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINID 102
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 37 VSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKY 73
V S K G +V +F A WC PC++ P Q KY
Sbjct: 21 VKLSDKTGSVVYLDFWASWCGPCRQSFPWXNQXQAKY 57
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 40 SIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICL-TVDVDELPEFSNSWGVTAT 98
++ G++ NF + CS C +AP + + A + ++ + V+ + GV +
Sbjct: 110 AVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSY 169
Query: 99 PTFFFLKDGRQIDKLIGSNKLE 120
P+ F + G K G E
Sbjct: 170 PSLFIFRSGMAAVKYNGDRSKE 191
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 11/81 (13%)
Query: 39 ESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICL-TVDVDELPEFSNSWGVTA 97
E I+ + + F A WC C+++ P + + A ++ + V+ D+ +GV
Sbjct: 30 EVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGVQG 89
Query: 98 TPTFFFLKDGRQIDKLIGSNK 118
PT K+ G+NK
Sbjct: 90 FPTI----------KIFGANK 100
>pdb|2H1B|A Chain A, Resa E80q
pdb|2H1B|B Chain B, Resa E80q
pdb|2H1B|C Chain C, Resa E80q
pdb|2H1B|D Chain D, Resa E80q
Length = 143
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKY 73
GK V NF WC PCKK P +A++Y
Sbjct: 26 GKGVFLNFWGTWCEPCKKQFPY---MANQY 52
>pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1ST9|B Chain B, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1SU9|A Chain A, Reduced Structure Of The Soluble Domain Of Resa
pdb|1SU9|B Chain B, Reduced Structure Of The Soluble Domain Of Resa
pdb|2H1D|A Chain A, Resa Ph 9.25
pdb|2H1D|B Chain B, Resa Ph 9.25
Length = 143
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKY 73
GK V NF WC PCKK P +A++Y
Sbjct: 26 GKGVFLNFWGTWCEPCKKEFPY---MANQY 52
>pdb|2F9S|A Chain A, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|2F9S|B Chain B, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
Length = 151
Score = 30.4 bits (67), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKYPS--MICLTVDVDE----LPEFSNSWGVT 96
GK V NF WC PCKK P + S + + V+V E + F S+GV
Sbjct: 26 GKGVFLNFWGTWCEPCKKEFPYXANQYKHFKSQGVEIVAVNVGESKIAVHNFXKSYGVN 84
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKY 73
GK + + A WC PC+ P +L +KY
Sbjct: 30 GKYIYIDVWATWCGPCRGELPALKELEEKY 59
>pdb|3HA9|A Chain A, The 1.7a Crystal Structure Of A Thioredoxin-like Protein
From Aeropyrum Pernix
Length = 165
Score = 29.6 bits (65), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVD 82
G +V+ F A WC C +A + +L +KY + + +D
Sbjct: 37 GDVVILWFMAAWCPSCVYMADLLDRLTEKYREISVIAID 75
>pdb|1I5G|A Chain A, Tryparedoxin Ii Complexed With Glutathionylspermidine
Length = 144
Score = 29.3 bits (64), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKY 73
GK V FSA WC P + P QL D Y
Sbjct: 28 GKTVFFYFSASWCPPSRAFTP---QLIDFY 54
>pdb|3RAZ|A Chain A, The Crystal Structure Of Thioredoxin-Related Protein
From Neisseria Meningitidis Serogroup B
Length = 151
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 30 MVSWEAKVSESIKDGK--IVVANFSAQWCSPCKKIAPV 65
+ W+ +S++ K + + N A WC PC+K P
Sbjct: 8 LAGWKDNTPQSLQSLKAPVRIVNLWATWCGPCRKEXPA 45
>pdb|2H19|A Chain A, Crystal Structure Of Resa Cys77ala Variant
pdb|2H19|B Chain B, Crystal Structure Of Resa Cys77ala Variant
Length = 143
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKY 73
GK V NF WC P KK P +A++Y
Sbjct: 26 GKGVFLNFWGTWCEPAKKEFPY---MANQY 52
>pdb|2H1A|A Chain A, Resa C74a Variant
pdb|2H1A|B Chain B, Resa C74a Variant
Length = 143
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKY 73
GK V NF W PCKK P +A++Y
Sbjct: 26 GKGVFLNFWGTWAEPCKKEFPY---MANQY 52
>pdb|3C73|A Chain A, Structure Of Cehc Variant Resa
pdb|3C73|B Chain B, Structure Of Cehc Variant Resa
Length = 140
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKY 73
GK V NF WC CKK P +A++Y
Sbjct: 23 GKGVFLNFWGTWCEHCKKEFPY---MANQY 49
>pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site
Motif (Cphc)
Length = 143
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKY 73
GK V NF WC CKK P +A++Y
Sbjct: 26 GKGVFLNFWGTWCPHCKKEFPY---MANQY 52
>pdb|1R5Z|A Chain A, Crystal Structure Of Subunit C Of V-Atpase
pdb|1R5Z|B Chain B, Crystal Structure Of Subunit C Of V-Atpase
pdb|1R5Z|C Chain C, Crystal Structure Of Subunit C Of V-Atpase
pdb|1V9M|A Chain A, Crystal Structure Of The C Subunit Of V-Type Atpase From
Thermus Thermophilus
pdb|3J0J|M Chain M, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 323
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 77 ICLTVDVDELPEFSNSWGVTATPTFFFLKDGRQIDKL 113
+ L VD + L G P FFLK GR +D++
Sbjct: 192 LALEVDAENLRTAFKLQGSGLAPDAFFLKGGRFVDRV 228
>pdb|3LWA|A Chain A, The Crystal Structure Of A Secreted Thiol-Disulfide
Isomerase From Corynebacterium Glutamicum To 1.75a
Length = 183
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 45 KIVVANFSAQWCSPCK 60
++V+ N QWC+PC+
Sbjct: 60 QVVILNAWGQWCAPCR 75
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 38 SESIKDGKIV-VANFSAQWCSPCKKIAPVYIQLADKYPSMI-CLTVDVDELPEFSNSWGV 95
+E + GK V +F A W P + AP + LA + VD P+ G+
Sbjct: 668 NEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGI 727
Query: 96 TATPT 100
A P+
Sbjct: 728 KAYPS 732
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 48 VANFSAQWCSPCKKIAPVYIQLADKYPSMI---CLTVDVDELPEFSNSWGVTATPTFFFL 104
+ F A WC CKK++ + + A + ++ + D+++ + V PT
Sbjct: 39 LVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMVF 98
Query: 105 K 105
+
Sbjct: 99 R 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,335,890
Number of Sequences: 62578
Number of extensions: 120492
Number of successful extensions: 545
Number of sequences better than 100.0: 188
Number of HSP's better than 100.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 293
Number of HSP's gapped (non-prelim): 191
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)