Query 045454
Match_columns 133
No_of_seqs 119 out of 1017
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 13:25:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045454.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045454hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910 Thioredoxin-like prote 100.0 2E-27 4.3E-32 148.1 10.8 105 23-130 43-149 (150)
2 KOG0907 Thioredoxin [Posttrans 99.9 1.8E-25 3.8E-30 134.3 12.2 102 27-128 4-105 (106)
3 cd02985 TRX_CDSP32 TRX family, 99.9 7.5E-25 1.6E-29 131.8 13.0 97 29-127 2-101 (103)
4 cd02954 DIM1 Dim1 family; Dim1 99.9 4.2E-25 9.2E-30 133.7 10.4 85 30-116 2-87 (114)
5 PF00085 Thioredoxin: Thioredo 99.9 1.1E-23 2.3E-28 126.3 14.2 99 27-128 3-103 (103)
6 cd02948 TRX_NDPK TRX domain, T 99.9 5.7E-24 1.2E-28 127.8 12.6 97 26-127 3-101 (102)
7 PHA02278 thioredoxin-like prot 99.9 8.2E-24 1.8E-28 126.9 11.8 92 29-124 3-100 (103)
8 COG3118 Thioredoxin domain-con 99.9 3.9E-24 8.5E-29 146.2 11.0 106 23-130 24-131 (304)
9 cd03006 PDI_a_EFP1_N PDIa fami 99.9 1.7E-23 3.7E-28 127.4 12.3 101 22-124 9-112 (113)
10 PLN00410 U5 snRNP protein, DIM 99.9 1.8E-23 3.9E-28 131.0 12.5 106 24-131 5-122 (142)
11 cd02956 ybbN ybbN protein fami 99.9 3.3E-23 7.2E-28 123.0 11.7 93 32-126 2-96 (96)
12 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 2.7E-23 5.9E-28 124.6 11.0 92 29-124 7-100 (101)
13 cd02989 Phd_like_TxnDC9 Phosdu 99.9 3.6E-23 7.7E-28 126.4 11.7 92 21-116 3-94 (113)
14 cd02963 TRX_DnaJ TRX domain, D 99.9 2.7E-23 5.8E-28 126.6 10.8 99 28-127 9-110 (111)
15 cd02999 PDI_a_ERp44_like PDIa 99.9 2.7E-23 5.9E-28 124.3 10.4 91 32-125 8-100 (100)
16 cd03065 PDI_b_Calsequestrin_N 99.9 1.5E-22 3.3E-27 124.1 12.5 98 28-129 14-119 (120)
17 PRK09381 trxA thioredoxin; Pro 99.9 3.6E-22 7.8E-27 121.2 13.4 103 23-129 4-108 (109)
18 PTZ00051 thioredoxin; Provisio 99.9 2.1E-22 4.5E-27 119.9 12.2 96 24-123 2-97 (98)
19 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 1.1E-22 2.3E-27 122.5 10.8 94 29-125 7-104 (104)
20 cd02986 DLP Dim1 family, Dim1- 99.9 2.6E-23 5.5E-28 125.2 7.9 98 30-129 2-111 (114)
21 cd02957 Phd_like Phosducin (Ph 99.9 2.2E-22 4.8E-27 122.9 11.1 93 21-116 3-95 (113)
22 PRK10996 thioredoxin 2; Provis 99.9 8.3E-22 1.8E-26 124.4 13.8 105 19-128 32-138 (139)
23 cd02984 TRX_PICOT TRX domain, 99.9 5.7E-22 1.2E-26 117.8 11.8 94 30-125 2-96 (97)
24 cd02996 PDI_a_ERp44 PDIa famil 99.9 5.3E-22 1.1E-26 120.3 11.1 97 24-125 3-108 (108)
25 cd02965 HyaE HyaE family; HyaE 99.9 6.8E-22 1.5E-26 119.0 11.2 90 29-122 16-109 (111)
26 cd02994 PDI_a_TMX PDIa family, 99.9 1.7E-21 3.7E-26 116.7 11.8 96 24-127 3-101 (101)
27 cd03005 PDI_a_ERp46 PDIa famil 99.9 1.7E-21 3.6E-26 116.7 10.8 92 29-125 6-102 (102)
28 cd02987 Phd_like_Phd Phosducin 99.9 3E-21 6.4E-26 126.0 11.7 95 20-116 60-154 (175)
29 cd02950 TxlA TRX-like protein 99.9 4.5E-21 9.8E-26 121.4 12.1 90 41-130 17-111 (142)
30 PTZ00443 Thioredoxin domain-co 99.9 1.2E-20 2.6E-25 127.0 14.1 109 22-131 30-141 (224)
31 cd03002 PDI_a_MPD1_like PDI fa 99.9 5.1E-21 1.1E-25 116.0 11.2 94 29-125 6-108 (109)
32 TIGR01068 thioredoxin thioredo 99.9 9.5E-21 2E-25 112.9 12.1 96 30-128 3-100 (101)
33 cd02962 TMX2 TMX2 family; comp 99.9 1.1E-20 2.3E-25 120.5 12.9 92 22-116 28-127 (152)
34 cd02975 PfPDO_like_N Pyrococcu 99.9 1.2E-20 2.7E-25 115.2 11.9 90 41-130 19-111 (113)
35 KOG0908 Thioredoxin-like prote 99.9 4.9E-21 1.1E-25 127.7 10.6 106 23-130 2-107 (288)
36 TIGR01126 pdi_dom protein disu 99.9 7.6E-21 1.6E-25 113.7 10.4 96 29-128 2-101 (102)
37 cd02949 TRX_NTR TRX domain, no 99.9 2.1E-20 4.5E-25 111.3 11.3 84 42-125 11-96 (97)
38 cd02997 PDI_a_PDIR PDIa family 99.9 2.7E-20 5.8E-25 111.7 11.5 93 29-125 6-104 (104)
39 cd03000 PDI_a_TMX3 PDIa family 99.8 2.1E-20 4.5E-25 112.6 10.3 86 42-128 13-103 (104)
40 cd03001 PDI_a_P5 PDIa family, 99.8 4.2E-20 9.2E-25 110.8 11.6 94 29-125 6-102 (103)
41 cd02953 DsbDgamma DsbD gamma f 99.8 7.9E-21 1.7E-25 114.4 8.1 85 41-125 8-103 (104)
42 TIGR01295 PedC_BrcD bacterioci 99.8 8.9E-20 1.9E-24 112.7 12.0 93 29-126 12-121 (122)
43 cd02951 SoxW SoxW family; SoxW 99.8 8.8E-20 1.9E-24 113.2 11.3 95 36-130 5-120 (125)
44 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 1.4E-19 3E-24 108.6 10.4 94 28-125 5-104 (104)
45 cd02988 Phd_like_VIAF Phosduci 99.8 3.6E-19 7.8E-24 117.6 12.4 102 20-126 80-189 (192)
46 cd02947 TRX_family TRX family; 99.8 4.7E-19 1E-23 103.4 11.4 84 42-125 8-92 (93)
47 cd02993 PDI_a_APS_reductase PD 99.8 3E-19 6.5E-24 108.4 10.7 96 29-125 7-109 (109)
48 cd02961 PDI_a_family Protein D 99.8 1.9E-19 4.2E-24 106.9 9.5 92 29-124 4-100 (101)
49 PTZ00062 glutaredoxin; Provisi 99.8 3.8E-19 8.3E-24 118.1 11.2 91 29-130 5-95 (204)
50 cd02998 PDI_a_ERp38 PDIa famil 99.8 3.8E-19 8.2E-24 106.8 10.1 94 29-125 6-105 (105)
51 KOG0190 Protein disulfide isom 99.8 1.9E-18 4.1E-23 126.3 10.3 105 21-129 23-132 (493)
52 cd02959 ERp19 Endoplasmic reti 99.8 1.3E-18 2.8E-23 106.8 6.9 102 32-133 7-117 (117)
53 cd02992 PDI_a_QSOX PDIa family 99.8 3.7E-18 8.1E-23 104.4 8.6 84 29-116 7-96 (114)
54 cd02952 TRP14_like Human TRX-r 99.8 1.4E-17 3E-22 101.9 10.4 96 27-124 6-117 (119)
55 PTZ00102 disulphide isomerase; 99.8 1.4E-17 3E-22 123.6 12.1 106 21-130 356-466 (477)
56 TIGR00424 APS_reduc 5'-adenyly 99.8 2.3E-17 4.9E-22 121.0 12.9 106 22-128 350-462 (463)
57 PLN02309 5'-adenylylsulfate re 99.8 3.2E-17 6.9E-22 120.1 13.2 102 26-128 348-456 (457)
58 TIGR01130 ER_PDI_fam protein d 99.8 1.5E-17 3.2E-22 122.7 11.6 99 28-130 6-110 (462)
59 TIGR00411 redox_disulf_1 small 99.8 2.5E-17 5.5E-22 94.8 9.9 78 47-128 2-81 (82)
60 PTZ00102 disulphide isomerase; 99.7 2.5E-17 5.5E-22 122.2 12.4 99 27-130 36-139 (477)
61 PRK00293 dipZ thiol:disulfide 99.7 2.9E-17 6.3E-22 124.0 11.9 109 21-129 451-570 (571)
62 TIGR02738 TrbB type-F conjugat 99.7 4.8E-17 1E-21 103.9 9.6 86 42-128 48-152 (153)
63 TIGR02187 GlrX_arch Glutaredox 99.7 1.9E-16 4.2E-21 106.7 11.9 88 43-130 18-112 (215)
64 cd03007 PDI_a_ERp29_N PDIa fam 99.7 2E-16 4.2E-21 96.2 9.4 95 27-128 5-115 (116)
65 cd02982 PDI_b'_family Protein 99.7 1.2E-16 2.7E-21 95.7 8.3 85 44-128 12-102 (103)
66 PRK15412 thiol:disulfide inter 99.7 7.4E-16 1.6E-20 101.6 12.1 87 43-131 67-178 (185)
67 PRK14018 trifunctional thiored 99.7 4.9E-16 1.1E-20 115.4 11.8 87 42-128 54-172 (521)
68 KOG0190 Protein disulfide isom 99.7 1.6E-16 3.4E-21 116.4 8.6 110 13-128 356-472 (493)
69 PHA02125 thioredoxin-like prot 99.7 1E-15 2.3E-20 86.8 9.3 69 48-124 2-72 (75)
70 PF13098 Thioredoxin_2: Thiore 99.7 3.5E-16 7.5E-21 95.1 7.7 84 42-125 3-112 (112)
71 TIGR02187 GlrX_arch Glutaredox 99.7 1E-15 2.2E-20 103.2 10.5 82 43-127 132-214 (215)
72 TIGR00385 dsbE periplasmic pro 99.7 1.7E-15 3.8E-20 98.9 11.1 87 42-130 61-172 (173)
73 cd02955 SSP411 TRX domain, SSP 99.7 2.8E-15 6.1E-20 92.6 11.0 95 36-130 7-120 (124)
74 cd03010 TlpA_like_DsbE TlpA-li 99.7 1.7E-15 3.7E-20 94.1 9.8 78 42-120 23-125 (127)
75 TIGR02740 TraF-like TraF-like 99.7 4.4E-15 9.5E-20 103.0 12.5 88 42-130 164-265 (271)
76 cd03008 TryX_like_RdCVF Trypar 99.6 1.7E-15 3.7E-20 95.9 8.9 71 42-112 23-128 (146)
77 cd02973 TRX_GRX_like Thioredox 99.6 2.8E-15 6E-20 83.2 8.2 62 47-110 2-63 (67)
78 TIGR01130 ER_PDI_fam protein d 99.6 6.7E-15 1.5E-19 108.6 11.9 103 21-129 345-454 (462)
79 KOG4277 Uncharacterized conser 99.6 1.5E-15 3.2E-20 104.6 7.3 89 42-130 41-133 (468)
80 PF13905 Thioredoxin_8: Thiore 99.6 4.9E-15 1.1E-19 87.6 8.5 66 44-109 1-95 (95)
81 PRK13728 conjugal transfer pro 99.6 3.1E-14 6.6E-19 92.8 12.7 83 48-131 73-173 (181)
82 cd02958 UAS UAS family; UAS is 99.6 2.5E-14 5.4E-19 87.4 11.0 100 31-130 4-112 (114)
83 PRK03147 thiol-disulfide oxido 99.6 2.3E-14 5.1E-19 93.3 11.4 86 43-128 60-171 (173)
84 cd03026 AhpF_NTD_C TRX-GRX-lik 99.6 1.6E-14 3.5E-19 84.5 9.3 76 42-121 10-86 (89)
85 TIGR00412 redox_disulf_2 small 99.6 1.4E-14 3.1E-19 82.4 8.6 70 49-125 3-75 (76)
86 cd02960 AGR Anterior Gradient 99.6 3E-14 6.6E-19 88.2 10.4 103 29-132 8-126 (130)
87 cd03009 TryX_like_TryX_NRX Try 99.6 1E-14 2.3E-19 91.0 8.5 71 42-112 16-115 (131)
88 cd02964 TryX_like_family Trypa 99.6 9.9E-15 2.1E-19 91.3 8.1 71 42-112 15-115 (132)
89 PLN02919 haloacid dehalogenase 99.6 3.2E-14 6.8E-19 113.9 12.0 88 43-130 419-537 (1057)
90 cd02966 TlpA_like_family TlpA- 99.6 6E-14 1.3E-18 84.7 9.3 73 43-115 18-116 (116)
91 KOG0912 Thiol-disulfide isomer 99.6 2.3E-14 5E-19 98.6 7.9 95 31-129 4-106 (375)
92 cd03011 TlpA_like_ScsD_MtbDsbE 99.5 9.5E-14 2.1E-18 85.6 9.3 82 42-124 18-121 (123)
93 cd03012 TlpA_like_DipZ_like Tl 99.5 1.1E-13 2.4E-18 85.9 9.5 75 42-116 21-125 (126)
94 PRK11509 hydrogenase-1 operon 99.5 4.4E-13 9.6E-18 83.1 11.8 97 31-131 25-126 (132)
95 KOG0191 Thioredoxin/protein di 99.5 8.8E-14 1.9E-18 101.0 9.0 89 42-130 45-135 (383)
96 PF08534 Redoxin: Redoxin; In 99.5 2.4E-13 5.3E-18 86.2 10.0 75 42-116 26-134 (146)
97 TIGR01626 ytfJ_HI0045 conserve 99.5 4.6E-13 9.9E-18 87.7 10.5 89 42-132 57-183 (184)
98 cd02967 mauD Methylamine utili 99.5 5.5E-13 1.2E-17 81.1 8.8 70 43-112 20-111 (114)
99 PLN02399 phospholipid hydroper 99.5 4.2E-13 9.2E-18 91.2 8.6 89 42-130 97-235 (236)
100 TIGR02661 MauD methylamine deh 99.5 1.5E-12 3.2E-17 86.2 10.9 86 42-128 72-178 (189)
101 PTZ00056 glutathione peroxidas 99.4 1.5E-12 3.3E-17 86.8 9.5 89 43-131 38-180 (199)
102 KOG3414 Component of the U4/U6 99.4 6.2E-12 1.3E-16 76.1 10.8 105 24-130 5-121 (142)
103 smart00594 UAS UAS domain. 99.4 4.7E-12 1E-16 78.2 10.1 97 29-125 12-121 (122)
104 PF13899 Thioredoxin_7: Thiore 99.4 1.2E-12 2.5E-17 75.5 6.4 74 31-105 4-81 (82)
105 COG4232 Thiol:disulfide interc 99.4 2.3E-12 5.1E-17 95.7 8.8 102 25-128 457-567 (569)
106 PF02114 Phosducin: Phosducin; 99.4 4E-12 8.6E-17 87.8 9.3 105 21-127 124-236 (265)
107 PF14595 Thioredoxin_9: Thiore 99.4 3.1E-12 6.6E-17 79.6 7.9 85 42-127 39-127 (129)
108 PLN02412 probable glutathione 99.4 7.8E-12 1.7E-16 81.2 10.0 88 43-130 28-165 (167)
109 KOG1731 FAD-dependent sulfhydr 99.4 5.1E-13 1.1E-17 98.6 4.7 105 21-129 38-153 (606)
110 cd02969 PRX_like1 Peroxiredoxi 99.4 2E-11 4.4E-16 79.5 10.9 88 43-130 24-153 (171)
111 TIGR02540 gpx7 putative glutat 99.3 1.3E-11 2.8E-16 79.1 9.1 87 42-128 20-152 (153)
112 KOG0191 Thioredoxin/protein di 99.3 8.8E-12 1.9E-16 90.6 8.9 99 29-130 150-253 (383)
113 PF02966 DIM1: Mitosis protein 99.3 1.8E-10 3.9E-15 70.6 12.7 104 24-130 2-118 (133)
114 cd00340 GSH_Peroxidase Glutath 99.3 7.3E-12 1.6E-16 80.2 6.7 81 43-124 21-151 (152)
115 TIGR02196 GlrX_YruB Glutaredox 99.3 3.1E-11 6.7E-16 67.5 8.0 68 48-125 2-73 (74)
116 KOG1672 ATP binding protein [P 99.3 1.4E-11 3.1E-16 79.9 7.2 94 19-116 63-156 (211)
117 COG2143 Thioredoxin-related pr 99.3 2.3E-10 5E-15 72.0 11.2 93 37-129 35-149 (182)
118 PF13728 TraF: F plasmid trans 99.2 2.7E-10 5.8E-15 76.8 11.4 81 43-124 119-213 (215)
119 cd03017 PRX_BCP Peroxiredoxin 99.2 1.2E-10 2.6E-15 73.2 9.1 83 43-125 22-139 (140)
120 COG0526 TrxA Thiol-disulfide i 99.2 9.3E-11 2E-15 70.4 8.0 85 44-128 32-123 (127)
121 KOG2501 Thioredoxin, nucleored 99.2 5.9E-11 1.3E-15 75.1 6.6 71 42-112 31-131 (157)
122 PTZ00256 glutathione peroxidas 99.2 1.5E-10 3.3E-15 76.2 8.7 88 43-130 39-182 (183)
123 cd03014 PRX_Atyp2cys Peroxired 99.2 2.7E-10 5.9E-15 72.0 9.4 83 43-125 25-141 (143)
124 PRK00522 tpx lipid hydroperoxi 99.2 4.5E-10 9.7E-15 73.0 10.0 85 43-127 43-164 (167)
125 PF00578 AhpC-TSA: AhpC/TSA fa 99.2 2.6E-10 5.7E-15 70.1 8.0 69 43-111 24-123 (124)
126 TIGR02200 GlrX_actino Glutared 99.1 4.6E-10 1E-14 63.4 7.8 70 48-126 2-76 (77)
127 PF06110 DUF953: Eukaryotic pr 99.1 1.2E-09 2.6E-14 66.8 9.9 81 27-107 2-99 (119)
128 TIGR02739 TraF type-F conjugat 99.1 3.5E-09 7.5E-14 72.8 11.9 87 43-130 149-249 (256)
129 PRK09437 bcp thioredoxin-depen 99.1 2.1E-09 4.5E-14 68.8 10.1 85 43-127 29-151 (154)
130 cd01659 TRX_superfamily Thiore 99.1 8.5E-10 1.9E-14 59.2 7.1 60 48-107 1-63 (69)
131 cd03015 PRX_Typ2cys Peroxiredo 99.1 3.1E-09 6.8E-14 69.3 10.9 86 43-128 28-156 (173)
132 PF13192 Thioredoxin_3: Thiore 99.1 3.5E-09 7.5E-14 60.1 8.9 70 51-126 5-76 (76)
133 cd02970 PRX_like2 Peroxiredoxi 99.0 3.8E-09 8.3E-14 66.9 9.5 72 44-115 24-148 (149)
134 cd02991 UAS_ETEA UAS family, E 99.0 1.5E-08 3.2E-13 62.0 11.3 97 32-130 5-114 (116)
135 PRK13703 conjugal pilus assemb 99.0 1.1E-08 2.4E-13 70.0 11.6 87 43-130 142-242 (248)
136 PRK11200 grxA glutaredoxin 1; 99.0 3.6E-09 7.8E-14 61.2 8.0 76 47-129 2-83 (85)
137 TIGR03137 AhpC peroxiredoxin. 99.0 4.2E-09 9.1E-14 69.6 9.1 73 43-115 30-137 (187)
138 PF03190 Thioredox_DsbH: Prote 99.0 3.8E-09 8.1E-14 67.8 8.5 96 35-130 28-142 (163)
139 cd03018 PRX_AhpE_like Peroxire 99.0 8.4E-09 1.8E-13 65.5 10.0 74 44-117 28-134 (149)
140 KOG0914 Thioredoxin-like prote 99.0 1.7E-09 3.7E-14 71.6 6.1 93 22-116 124-224 (265)
141 TIGR02180 GRX_euk Glutaredoxin 99.0 3.2E-09 7E-14 61.0 6.4 60 48-110 1-65 (84)
142 cd02971 PRX_family Peroxiredox 98.9 1.5E-08 3.2E-13 63.6 9.0 75 43-117 21-130 (140)
143 PRK10606 btuE putative glutath 98.9 1.5E-08 3.2E-13 66.7 8.1 42 42-84 23-66 (183)
144 KOG0913 Thiol-disulfide isomer 98.9 9.6E-10 2.1E-14 73.5 2.3 97 23-127 25-124 (248)
145 cd02968 SCO SCO (an acronym fo 98.9 1.3E-08 2.9E-13 64.0 7.4 42 43-84 21-68 (142)
146 KOG0911 Glutaredoxin-related p 98.9 1.9E-09 4.1E-14 71.7 3.5 100 24-129 3-102 (227)
147 PF11009 DUF2847: Protein of u 98.9 7.6E-08 1.7E-12 57.4 9.8 87 25-113 2-94 (105)
148 cd02976 NrdH NrdH-redoxin (Nrd 98.9 3.6E-08 7.7E-13 54.8 8.1 67 48-124 2-72 (73)
149 PRK13190 putative peroxiredoxi 98.8 7.3E-08 1.6E-12 64.5 10.6 87 43-129 26-154 (202)
150 TIGR03143 AhpF_homolog putativ 98.8 7.1E-08 1.5E-12 73.4 10.8 78 44-125 476-554 (555)
151 PRK10382 alkyl hydroperoxide r 98.8 8.9E-08 1.9E-12 63.3 9.8 86 43-128 30-155 (187)
152 PRK15000 peroxidase; Provision 98.8 1.2E-07 2.6E-12 63.3 9.9 85 43-127 33-160 (200)
153 PF00462 Glutaredoxin: Glutare 98.8 5.9E-08 1.3E-12 52.4 6.9 56 48-110 1-60 (60)
154 TIGR02183 GRXA Glutaredoxin, G 98.8 4.1E-08 9E-13 56.9 6.7 73 48-127 2-80 (86)
155 PRK10877 protein disulfide iso 98.8 6.3E-08 1.4E-12 66.1 8.5 81 42-128 105-230 (232)
156 KOG3425 Uncharacterized conser 98.8 1.3E-07 2.9E-12 57.0 8.7 76 29-105 11-103 (128)
157 PRK15317 alkyl hydroperoxide r 98.8 1.3E-07 2.8E-12 71.4 10.7 81 43-127 115-196 (517)
158 KOG3171 Conserved phosducin-li 98.7 1.3E-07 2.9E-12 62.6 7.6 105 21-127 137-249 (273)
159 PHA03050 glutaredoxin; Provisi 98.7 1.1E-07 2.4E-12 57.4 6.5 62 48-111 15-81 (108)
160 PRK10329 glutaredoxin-like pro 98.7 7.4E-07 1.6E-11 51.1 9.5 72 48-129 3-77 (81)
161 TIGR02194 GlrX_NrdH Glutaredox 98.7 2.1E-07 4.5E-12 52.1 7.0 66 49-123 2-70 (72)
162 cd03016 PRX_1cys Peroxiredoxin 98.6 6.8E-07 1.5E-11 59.9 10.3 83 46-128 28-153 (203)
163 PTZ00137 2-Cys peroxiredoxin; 98.6 9.5E-07 2.1E-11 61.2 10.9 86 43-128 97-224 (261)
164 PRK13189 peroxiredoxin; Provis 98.6 8.1E-07 1.8E-11 60.3 10.4 87 43-129 34-163 (222)
165 PRK13599 putative peroxiredoxi 98.6 5.1E-07 1.1E-11 61.0 9.1 86 43-128 27-155 (215)
166 TIGR02189 GlrX-like_plant Glut 98.6 1E-07 2.3E-12 56.7 5.1 57 48-111 10-73 (99)
167 TIGR03140 AhpF alkyl hydropero 98.6 7.9E-07 1.7E-11 67.2 10.8 81 43-127 116-197 (515)
168 PTZ00253 tryparedoxin peroxida 98.6 7.4E-07 1.6E-11 59.5 9.4 73 43-115 35-145 (199)
169 cd03419 GRX_GRXh_1_2_like Glut 98.6 3.4E-07 7.3E-12 52.3 6.6 58 48-110 2-64 (82)
170 PRK13191 putative peroxiredoxi 98.5 1.4E-06 3.1E-11 58.8 9.6 86 43-128 32-160 (215)
171 cd03023 DsbA_Com1_like DsbA fa 98.5 7.7E-07 1.7E-11 56.4 7.9 39 42-80 3-41 (154)
172 TIGR02190 GlrX-dom Glutaredoxi 98.5 5.5E-07 1.2E-11 51.3 6.5 60 44-110 6-68 (79)
173 PRK11657 dsbG disulfide isomer 98.5 7.6E-07 1.6E-11 61.5 8.3 82 43-126 116-249 (251)
174 cd03020 DsbA_DsbC_DsbG DsbA fa 98.5 4.4E-07 9.6E-12 60.4 7.0 75 43-124 76-196 (197)
175 PF13848 Thioredoxin_6: Thiore 98.5 7.8E-06 1.7E-10 53.4 12.3 99 25-127 79-184 (184)
176 KOG3170 Conserved phosducin-li 98.5 8.4E-07 1.8E-11 58.3 7.1 103 21-128 90-200 (240)
177 cd03029 GRX_hybridPRX5 Glutare 98.5 2.8E-06 6E-11 47.4 8.1 56 48-110 3-61 (72)
178 PF05768 DUF836: Glutaredoxin- 98.5 3.9E-06 8.4E-11 48.1 8.8 77 48-126 2-81 (81)
179 cd02066 GRX_family Glutaredoxi 98.4 2.1E-06 4.5E-11 47.3 6.8 57 48-111 2-62 (72)
180 TIGR02181 GRX_bact Glutaredoxi 98.4 1E-06 2.2E-11 50.1 5.6 56 48-110 1-60 (79)
181 cd03418 GRX_GRXb_1_3_like Glut 98.4 3.3E-06 7.1E-11 47.3 7.4 56 48-110 2-62 (75)
182 cd03027 GRX_DEP Glutaredoxin ( 98.4 3.4E-06 7.4E-11 47.2 6.8 57 48-111 3-63 (73)
183 TIGR00365 monothiol glutaredox 98.3 7.3E-06 1.6E-10 48.6 7.9 50 54-110 25-78 (97)
184 COG0695 GrxC Glutaredoxin and 98.3 4.1E-06 8.8E-11 47.9 6.5 55 48-109 3-63 (80)
185 cd03019 DsbA_DsbA DsbA family, 98.3 6.3E-06 1.4E-10 53.6 7.7 36 43-78 14-50 (178)
186 PRK10638 glutaredoxin 3; Provi 98.3 2.4E-06 5.2E-11 49.1 5.0 57 48-111 4-64 (83)
187 cd02983 P5_C P5 family, C-term 98.3 5.7E-05 1.2E-09 47.1 11.3 103 23-130 3-116 (130)
188 PF01216 Calsequestrin: Calseq 98.3 5.6E-05 1.2E-09 53.8 12.2 99 26-130 37-145 (383)
189 PRK10824 glutaredoxin-4; Provi 98.2 5.3E-06 1.2E-10 50.6 6.0 68 35-111 6-82 (115)
190 PF13462 Thioredoxin_4: Thiore 98.2 5.2E-05 1.1E-09 48.5 10.9 81 42-127 10-162 (162)
191 PF07449 HyaE: Hydrogenase-1 e 98.2 1.8E-05 3.9E-10 47.5 7.9 87 24-116 11-101 (107)
192 KOG2603 Oligosaccharyltransfer 98.1 3.1E-05 6.6E-10 54.3 9.1 109 20-130 38-167 (331)
193 cd03028 GRX_PICOT_like Glutare 98.1 2E-05 4.3E-10 46.0 6.9 50 54-110 21-74 (90)
194 TIGR03143 AhpF_homolog putativ 98.1 8.5E-05 1.8E-09 56.9 11.5 89 42-130 364-455 (555)
195 KOG1752 Glutaredoxin and relat 98.1 6E-05 1.3E-09 45.1 8.0 56 50-110 18-78 (104)
196 PRK10954 periplasmic protein d 98.0 3.7E-05 8E-10 51.6 7.3 37 44-80 37-77 (207)
197 PTZ00062 glutaredoxin; Provisi 97.9 0.00011 2.3E-09 49.3 8.1 72 32-110 101-179 (204)
198 cd03072 PDI_b'_ERp44 PDIb' fam 97.9 0.00022 4.7E-09 43.3 8.8 86 43-130 15-109 (111)
199 PRK12759 bifunctional gluaredo 97.8 4.2E-05 9E-10 56.5 5.5 56 48-110 4-71 (410)
200 COG1225 Bcp Peroxiredoxin [Pos 97.8 0.00059 1.3E-08 43.8 9.5 88 41-128 27-152 (157)
201 cd02981 PDI_b_family Protein D 97.7 0.00092 2E-08 39.1 9.3 91 26-127 3-96 (97)
202 cd02972 DsbA_family DsbA famil 97.7 0.00028 6.1E-09 40.8 6.5 58 48-105 1-91 (98)
203 PF00837 T4_deiodinase: Iodoth 97.5 0.0015 3.2E-08 44.6 8.9 63 19-83 79-142 (237)
204 cd03073 PDI_b'_ERp72_ERp57 PDI 97.5 0.0016 3.5E-08 39.5 7.7 73 56-128 30-110 (111)
205 COG1331 Highly conserved prote 97.4 0.00099 2.1E-08 51.5 8.1 76 36-111 35-123 (667)
206 cd03031 GRX_GRX_like Glutaredo 97.3 0.0012 2.5E-08 42.1 5.7 57 48-111 2-72 (147)
207 PF07912 ERp29_N: ERp29, N-ter 97.0 0.03 6.5E-07 34.4 11.2 96 29-128 10-118 (126)
208 PF01323 DSBA: DSBA-like thior 97.0 0.015 3.3E-07 38.1 9.2 30 47-76 1-30 (193)
209 cd03013 PRX5_like Peroxiredoxi 96.9 0.017 3.6E-07 37.1 8.5 73 44-116 29-140 (155)
210 COG1651 DsbG Protein-disulfide 96.6 0.015 3.2E-07 39.9 7.3 36 89-129 207-243 (244)
211 cd02978 KaiB_like KaiB-like fa 96.5 0.013 2.9E-07 32.6 5.3 58 47-104 3-62 (72)
212 cd02990 UAS_FAF1 UAS family, F 96.4 0.11 2.4E-06 32.7 11.3 98 32-131 5-135 (136)
213 cd02974 AhpF_NTD_N Alkyl hydro 96.2 0.11 2.3E-06 30.6 10.2 74 43-128 18-93 (94)
214 cd03067 PDI_b_PDIR_N PDIb fami 96.2 0.089 1.9E-06 31.3 7.5 96 26-126 5-109 (112)
215 PF13848 Thioredoxin_6: Thiore 96.0 0.083 1.8E-06 34.2 8.0 63 62-128 8-74 (184)
216 COG0386 BtuE Glutathione perox 96.0 0.14 3E-06 32.8 8.4 88 42-130 23-161 (162)
217 TIGR02654 circ_KaiB circadian 95.9 0.035 7.7E-07 32.1 5.1 71 45-116 3-75 (87)
218 cd02977 ArsC_family Arsenate R 95.8 0.013 2.8E-07 34.9 3.3 33 49-86 2-34 (105)
219 cd03066 PDI_b_Calsequestrin_mi 95.8 0.19 4.2E-06 29.7 9.3 94 24-128 2-100 (102)
220 PF06053 DUF929: Domain of unk 95.8 0.063 1.4E-06 37.2 6.8 37 42-78 56-92 (249)
221 PRK15317 alkyl hydroperoxide r 95.6 0.31 6.8E-06 37.3 10.6 76 43-130 18-95 (517)
222 COG4545 Glutaredoxin-related p 95.5 0.049 1.1E-06 30.5 4.3 57 49-111 5-77 (85)
223 PRK09301 circadian clock prote 95.5 0.064 1.4E-06 32.0 5.1 77 44-121 5-85 (103)
224 PHA03075 glutaredoxin-like pro 95.3 0.036 7.9E-07 33.6 3.8 29 45-73 2-30 (123)
225 TIGR01617 arsC_related transcr 95.2 0.048 1E-06 33.2 4.3 34 49-87 2-35 (117)
226 TIGR03140 AhpF alkyl hydropero 95.1 0.54 1.2E-05 36.0 10.7 77 43-130 18-96 (515)
227 cd03060 GST_N_Omega_like GST_N 95.0 0.076 1.7E-06 29.0 4.4 57 49-109 2-59 (71)
228 KOG2507 Ubiquitin regulatory p 94.9 0.57 1.2E-05 34.9 9.6 97 33-130 8-112 (506)
229 cd00570 GST_N_family Glutathio 94.9 0.12 2.6E-06 27.3 5.0 55 50-109 3-59 (71)
230 cd03036 ArsC_like Arsenate Red 94.9 0.047 1E-06 33.0 3.6 34 49-87 2-35 (111)
231 PRK01655 spxA transcriptional 94.8 0.062 1.3E-06 33.5 4.1 32 48-84 2-33 (131)
232 KOG2640 Thioredoxin [Function 94.8 0.014 3.1E-07 41.2 1.3 86 44-130 76-163 (319)
233 cd03037 GST_N_GRX2 GST_N famil 94.8 0.11 2.4E-06 28.3 4.7 50 50-102 3-52 (71)
234 cd03041 GST_N_2GST_N GST_N fam 94.8 0.27 5.8E-06 27.4 6.4 69 49-127 3-75 (77)
235 cd03069 PDI_b_ERp57 PDIb famil 94.1 0.7 1.5E-05 27.4 8.2 90 25-128 3-103 (104)
236 cd03035 ArsC_Yffb Arsenate Red 94.0 0.086 1.9E-06 31.6 3.3 33 49-86 2-34 (105)
237 KOG2792 Putative cytochrome C 94.0 0.66 1.4E-05 32.4 7.8 110 19-131 117-277 (280)
238 cd03074 PDI_b'_Calsequestrin_C 93.9 0.81 1.8E-05 27.6 9.2 86 44-129 20-120 (120)
239 cd03051 GST_N_GTT2_like GST_N 93.8 0.24 5.1E-06 26.9 4.7 52 49-103 2-57 (74)
240 COG1999 Uncharacterized protei 93.8 1.4 2.9E-05 29.8 10.6 89 42-130 65-205 (207)
241 PF06764 DUF1223: Protein of u 93.8 1.2 2.5E-05 30.1 8.6 79 48-131 2-100 (202)
242 cd03059 GST_N_SspA GST_N famil 93.6 0.29 6.2E-06 26.6 4.8 51 49-102 2-53 (73)
243 cd03040 GST_N_mPGES2 GST_N fam 93.6 0.51 1.1E-05 26.0 5.8 72 48-128 2-75 (77)
244 TIGR02742 TrbC_Ftype type-F co 93.5 1.1 2.4E-05 28.0 8.1 25 84-108 58-82 (130)
245 cd03032 ArsC_Spx Arsenate Redu 93.4 0.22 4.7E-06 30.2 4.4 33 48-85 2-34 (115)
246 COG5494 Predicted thioredoxin/ 93.3 0.59 1.3E-05 31.6 6.5 73 47-126 12-85 (265)
247 KOG1651 Glutathione peroxidase 93.3 0.83 1.8E-05 29.7 7.0 43 42-84 32-76 (171)
248 PF07689 KaiB: KaiB domain; I 93.1 0.055 1.2E-06 31.0 1.3 52 51-102 3-56 (82)
249 PRK12559 transcriptional regul 93.0 0.21 4.6E-06 31.1 4.0 22 48-69 2-23 (131)
250 COG3634 AhpF Alkyl hydroperoxi 92.9 0.76 1.6E-05 33.8 7.0 80 43-126 115-195 (520)
251 COG2761 FrnE Predicted dithiol 92.5 0.35 7.6E-06 33.0 4.7 38 89-130 176-214 (225)
252 PF13417 GST_N_3: Glutathione 92.3 1.1 2.4E-05 24.6 6.6 69 50-128 1-70 (75)
253 PF04592 SelP_N: Selenoprotein 91.8 3 6.6E-05 28.7 8.9 43 42-84 24-71 (238)
254 COG0278 Glutaredoxin-related p 91.7 1.8 3.9E-05 25.8 6.5 75 33-111 4-83 (105)
255 cd03045 GST_N_Delta_Epsilon GS 91.6 0.67 1.4E-05 25.2 4.6 51 49-102 2-56 (74)
256 COG5429 Uncharacterized secret 91.4 0.84 1.8E-05 31.4 5.5 82 45-129 42-141 (261)
257 PRK13344 spxA transcriptional 91.4 0.45 9.7E-06 29.7 4.0 32 48-84 2-33 (132)
258 PF02630 SCO1-SenC: SCO1/SenC; 91.1 1.3 2.9E-05 28.9 6.2 44 42-85 50-98 (174)
259 PF13743 Thioredoxin_5: Thiore 90.7 0.65 1.4E-05 30.4 4.5 32 50-81 2-34 (176)
260 PF09673 TrbC_Ftype: Type-F co 90.7 2.5 5.4E-05 25.6 7.9 70 31-106 11-80 (113)
261 cd03055 GST_N_Omega GST_N fami 90.0 1.7 3.6E-05 24.9 5.4 53 48-103 19-72 (89)
262 COG3019 Predicted metal-bindin 88.7 4.4 9.6E-05 25.7 7.5 74 44-127 24-102 (149)
263 PF09695 YtfJ_HI0045: Bacteria 88.4 5.1 0.00011 26.0 8.8 87 43-129 36-158 (160)
264 COG3531 Predicted protein-disu 88.0 0.91 2E-05 30.4 3.6 41 88-128 165-208 (212)
265 COG0450 AhpC Peroxiredoxin [Po 86.0 8.2 0.00018 25.9 9.7 85 44-128 33-160 (194)
266 PF00255 GSHPx: Glutathione pe 85.8 3.8 8.2E-05 24.7 5.2 43 42-85 19-63 (108)
267 cd03024 DsbA_FrnE DsbA family, 84.8 1.9 4.1E-05 28.4 4.0 34 88-125 166-200 (201)
268 PF06953 ArsD: Arsenical resis 83.8 8.1 0.00017 23.9 7.0 54 74-129 39-102 (123)
269 cd03061 GST_N_CLIC GST_N famil 83.0 5.1 0.00011 23.3 4.8 66 53-128 19-85 (91)
270 cd03033 ArsC_15kD Arsenate Red 82.9 1.8 3.8E-05 26.3 2.9 22 48-69 2-23 (113)
271 cd03022 DsbA_HCCA_Iso DsbA fam 82.8 2.1 4.6E-05 27.9 3.5 33 88-125 158-191 (192)
272 PRK13730 conjugal transfer pil 82.8 3 6.5E-05 28.1 4.1 34 86-120 151-185 (212)
273 cd03056 GST_N_4 GST_N family, 82.5 5.6 0.00012 21.2 5.7 55 50-109 3-61 (73)
274 PF00352 TBP: Transcription fa 82.4 2.6 5.7E-05 24.1 3.4 33 98-132 49-82 (86)
275 cd03052 GST_N_GDAP1 GST_N fami 81.5 6.7 0.00015 21.4 5.8 56 49-109 2-61 (73)
276 PF13778 DUF4174: Domain of un 81.1 10 0.00022 23.2 8.6 78 51-128 15-111 (118)
277 PF11287 DUF3088: Protein of u 81.0 2.8 6E-05 25.4 3.2 51 55-105 23-76 (112)
278 cd03025 DsbA_FrnE_like DsbA fa 80.7 3.8 8.3E-05 26.7 4.2 27 48-74 3-29 (193)
279 PF01216 Calsequestrin: Calseq 80.3 21 0.00046 26.4 8.9 88 43-130 267-369 (383)
280 cd03030 GRX_SH3BGR Glutaredoxi 80.2 6.1 0.00013 23.0 4.4 36 74-111 29-72 (92)
281 cd03068 PDI_b_ERp72 PDIb famil 79.8 10 0.00023 22.6 10.1 93 24-127 2-106 (107)
282 PF04134 DUF393: Protein of un 78.7 3.4 7.3E-05 24.7 3.2 57 51-108 2-61 (114)
283 TIGR00014 arsC arsenate reduct 78.4 3.6 7.8E-05 24.9 3.2 31 49-84 2-32 (114)
284 COG2101 SPT15 TATA-box binding 78.0 6.2 0.00014 26.0 4.3 33 99-133 54-87 (185)
285 cd03034 ArsC_ArsC Arsenate Red 76.7 4.3 9.4E-05 24.4 3.2 31 49-84 2-32 (112)
286 cd03053 GST_N_Phi GST_N family 76.6 9.9 0.00022 20.5 4.8 57 48-109 2-62 (76)
287 PLN00062 TATA-box-binding prot 75.9 13 0.00027 24.7 5.4 49 81-132 31-80 (179)
288 PRK00394 transcription factor; 74.6 15 0.00032 24.3 5.5 32 99-132 47-79 (179)
289 PF13743 Thioredoxin_5: Thiore 74.5 2.9 6.2E-05 27.4 2.2 18 88-105 138-155 (176)
290 COG0821 gcpE 1-hydroxy-2-methy 73.1 20 0.00043 26.3 6.1 77 55-131 263-353 (361)
291 PRK09481 sspA stringent starva 71.4 21 0.00045 23.7 5.9 63 43-110 6-69 (211)
292 cd04518 TBP_archaea archaeal T 69.6 14 0.00031 24.3 4.5 31 100-132 140-171 (174)
293 COG1393 ArsC Arsenate reductas 69.4 7.2 0.00016 23.8 3.0 26 48-73 3-28 (117)
294 KOG1364 Predicted ubiquitin re 68.6 12 0.00026 27.4 4.3 54 76-129 133-189 (356)
295 PRK00366 ispG 4-hydroxy-3-meth 68.2 30 0.00065 25.6 6.2 74 55-128 270-356 (360)
296 cd03049 GST_N_3 GST_N family, 68.1 17 0.00036 19.5 4.8 58 50-109 3-61 (73)
297 PF12617 LdpA_C: Iron-Sulfur b 67.8 20 0.00043 23.8 4.9 71 58-128 19-96 (183)
298 PF08806 Sep15_SelM: Sep15/Sel 66.8 11 0.00023 21.3 3.1 32 97-128 41-75 (78)
299 PF09822 ABC_transp_aux: ABC-t 66.0 42 0.00092 23.4 12.0 55 43-97 24-88 (271)
300 cd04518 TBP_archaea archaeal T 65.7 18 0.00038 23.8 4.4 32 99-132 48-80 (174)
301 COG3411 Ferredoxin [Energy pro 65.6 20 0.00043 19.5 3.9 29 98-130 17-46 (64)
302 PRK00394 transcription factor; 65.6 16 0.00036 24.1 4.3 31 100-132 141-172 (179)
303 cd04516 TBP_eukaryotes eukaryo 65.6 17 0.00036 23.9 4.3 31 100-132 49-80 (174)
304 cd00652 TBP_TLF TATA box bindi 65.3 17 0.00036 23.9 4.2 32 99-132 48-80 (174)
305 PRK10853 putative reductase; P 64.1 8.8 0.00019 23.4 2.6 22 48-69 2-23 (118)
306 cd03021 DsbA_GSTK DsbA family, 63.3 11 0.00024 25.2 3.2 36 89-124 171-207 (209)
307 cd04517 TLF TBP-like factors ( 62.9 21 0.00045 23.5 4.3 32 99-132 48-80 (174)
308 TIGR01616 nitro_assoc nitrogen 62.5 12 0.00027 23.1 3.1 22 48-69 3-24 (126)
309 COG3011 Predicted thiol-disulf 60.7 40 0.00087 21.3 5.9 67 43-110 5-73 (137)
310 cd00652 TBP_TLF TATA box bindi 60.1 28 0.00061 22.8 4.6 31 100-132 141-172 (174)
311 PF07315 DUF1462: Protein of u 59.2 34 0.00074 20.0 8.3 71 51-125 3-92 (93)
312 PF03960 ArsC: ArsC family; I 58.4 21 0.00045 21.2 3.5 31 51-86 1-31 (110)
313 PRK10026 arsenate reductase; P 58.0 15 0.00032 23.4 2.9 22 48-69 4-25 (141)
314 KOG2244 Highly conserved prote 53.7 16 0.00034 28.8 2.9 70 35-104 103-184 (786)
315 TIGR03759 conj_TIGR03759 integ 53.7 54 0.0012 22.2 5.1 42 43-87 107-148 (200)
316 cd04517 TLF TBP-like factors ( 52.8 44 0.00095 22.0 4.6 31 100-132 141-172 (174)
317 cd03058 GST_N_Tau GST_N family 52.7 35 0.00077 18.2 5.7 50 50-102 3-54 (74)
318 KOG0855 Alkyl hydroperoxide re 52.5 66 0.0014 21.3 8.0 58 42-99 88-169 (211)
319 PLN00062 TATA-box-binding prot 52.4 45 0.00098 22.1 4.6 31 100-132 140-171 (179)
320 cd04516 TBP_eukaryotes eukaryo 51.9 47 0.001 21.9 4.6 30 101-132 141-171 (174)
321 KOG0911 Glutaredoxin-related p 51.8 77 0.0017 21.9 5.8 74 33-111 128-206 (227)
322 KOG1422 Intracellular Cl- chan 51.4 77 0.0017 21.7 6.6 65 55-129 20-85 (221)
323 PF06491 Disulph_isomer: Disul 50.1 63 0.0014 20.3 11.0 107 20-130 14-133 (136)
324 PF13409 GST_N_2: Glutathione 48.5 43 0.00092 17.9 5.5 51 55-109 1-56 (70)
325 PRK10387 glutaredoxin 2; Provi 46.8 68 0.0015 21.0 5.0 50 50-102 3-52 (210)
326 PF04908 SH3BGR: SH3-binding, 46.7 59 0.0013 19.3 4.1 41 49-89 3-45 (99)
327 COG3054 Predicted transcriptio 46.1 82 0.0018 20.5 5.6 42 92-133 140-184 (184)
328 cd03039 GST_N_Sigma_like GST_N 45.6 47 0.001 17.6 3.4 49 51-102 4-54 (72)
329 COG1519 KdtA 3-deoxy-D-manno-o 45.5 1.3E+02 0.0029 22.8 7.2 36 47-82 50-85 (419)
330 PF14424 Toxin-deaminase: The 45.4 30 0.00066 21.7 2.9 26 53-81 105-130 (133)
331 PF04551 GcpE: GcpE protein; 45.1 57 0.0012 24.2 4.5 72 56-127 271-357 (359)
332 cd03062 TRX_Fd_Sucrase TRX-lik 44.2 53 0.0011 19.2 3.6 31 96-130 51-84 (97)
333 cd03054 GST_N_Metaxin GST_N fa 43.7 51 0.0011 17.5 5.2 45 54-109 14-58 (72)
334 PF11453 DUF2950: Protein of u 43.2 34 0.00073 24.2 3.0 37 91-127 225-261 (271)
335 cd03044 GST_N_EF1Bgamma GST_N 42.9 45 0.00097 18.0 3.1 51 50-103 3-56 (75)
336 PF11238 DUF3039: Protein of u 42.0 31 0.00068 18.3 2.1 25 42-66 22-57 (58)
337 cd03022 DsbA_HCCA_Iso DsbA fam 41.9 33 0.00073 22.1 2.8 25 50-74 3-27 (192)
338 PF14639 YqgF: Holliday-juncti 41.9 53 0.0011 21.0 3.6 41 32-73 50-90 (150)
339 KOG0912 Thiol-disulfide isomer 41.7 1.4E+02 0.003 21.9 6.7 86 42-128 225-318 (375)
340 TIGR02743 TraW type-F conjugat 41.2 30 0.00065 23.4 2.5 39 66-110 158-197 (202)
341 TIGR02182 GRXB Glutaredoxin, G 41.1 97 0.0021 20.6 5.0 54 51-108 3-56 (209)
342 cd03024 DsbA_FrnE DsbA family, 40.1 58 0.0013 21.2 3.8 25 50-74 3-27 (201)
343 TIGR03107 glu_aminopep glutamy 39.9 1.5E+02 0.0033 21.8 7.0 84 43-130 249-336 (350)
344 PF05988 DUF899: Bacterial pro 37.2 1.4E+02 0.003 20.5 6.6 42 43-84 67-115 (211)
345 PF03227 GILT: Gamma interfero 37.0 92 0.002 18.5 4.5 21 48-68 3-24 (108)
346 TIGR00862 O-ClC intracellular 36.7 1.4E+02 0.0031 20.6 5.9 51 54-109 17-68 (236)
347 PF07511 DUF1525: Protein of u 35.9 59 0.0013 19.9 3.0 15 90-104 76-90 (114)
348 PF14307 Glyco_tran_WbsX: Glyc 35.8 1.1E+02 0.0023 22.4 4.8 41 43-83 157-199 (345)
349 KOG3286 Selenoprotein T [Gener 35.6 1.4E+02 0.0031 20.3 5.5 78 44-123 68-151 (226)
350 KOG2990 C2C2-type Zn-finger pr 35.1 69 0.0015 23.0 3.5 47 17-65 15-64 (317)
351 cd03050 GST_N_Theta GST_N fami 34.6 78 0.0017 16.9 5.3 54 50-108 3-60 (76)
352 PRK13738 conjugal transfer pil 34.4 27 0.00059 23.8 1.5 27 84-110 170-197 (209)
353 PF09936 Methyltrn_RNA_4: SAM- 34.1 53 0.0012 21.9 2.7 26 29-57 120-145 (185)
354 PF05679 CHGN: Chondroitin N-a 33.2 2.3E+02 0.0051 22.0 7.5 40 43-82 280-322 (499)
355 cd03038 GST_N_etherase_LigE GS 32.9 56 0.0012 18.0 2.5 65 53-127 13-81 (84)
356 KOG0496 Beta-galactosidase [Ca 32.8 1.2E+02 0.0027 24.4 4.9 99 29-132 47-155 (649)
357 PF07700 HNOB: Heme NO binding 32.2 1.4E+02 0.0031 19.2 5.4 41 43-83 126-168 (171)
358 PF02401 LYTB: LytB protein; 32.2 1.9E+02 0.0041 20.7 7.4 98 30-131 167-280 (281)
359 PRK15113 glutathione S-transfe 31.5 1.6E+02 0.0034 19.5 5.1 60 46-110 4-69 (214)
360 KOG0868 Glutathione S-transfer 29.9 21 0.00047 23.8 0.4 65 43-110 3-68 (217)
361 PRK11752 putative S-transferas 29.7 2E+02 0.0043 20.1 5.9 54 50-103 46-106 (264)
362 PTZ00151 translationally contr 29.3 1.1E+02 0.0025 20.1 3.7 40 69-108 125-167 (172)
363 COG4752 Uncharacterized protei 29.3 72 0.0016 20.6 2.6 18 41-58 130-147 (190)
364 PLN02378 glutathione S-transfe 28.7 1.5E+02 0.0032 19.8 4.3 50 54-108 18-68 (213)
365 COG3640 CooC CO dehydrogenase 28.1 1.2E+02 0.0025 21.4 3.7 26 75-100 29-54 (255)
366 PF14437 MafB19-deam: MafB19-l 27.2 1.8E+02 0.0038 18.7 5.3 27 44-73 99-125 (146)
367 PF01698 FLO_LFY: Floricaula / 27.0 21 0.00046 26.5 0.0 47 85-131 50-96 (386)
368 COG4097 Predicted ferric reduc 26.9 2.9E+02 0.0062 21.1 6.1 61 44-104 342-407 (438)
369 cd06353 PBP1_BmpA_Med_like Per 26.6 2.1E+02 0.0046 19.7 4.9 48 29-83 42-89 (258)
370 TIGR02652 conserved hypothetic 26.4 26 0.00055 22.3 0.3 13 55-67 11-23 (163)
371 PF03197 FRD2: Bacteriophage F 26.4 96 0.0021 18.4 2.6 40 1-40 56-96 (102)
372 PF09654 DUF2396: Protein of u 26.3 25 0.00054 22.3 0.2 13 55-67 8-20 (161)
373 PF14432 DYW_deaminase: DYW fa 25.8 48 0.001 20.1 1.4 18 54-71 84-101 (116)
374 PLN02817 glutathione dehydroge 25.6 2.3E+02 0.005 19.9 5.0 47 54-103 71-118 (265)
375 PF13407 Peripla_BP_4: Peripla 24.8 2.2E+02 0.0048 19.0 5.6 83 42-126 25-112 (257)
376 TIGR03439 methyl_EasF probable 24.6 1.5E+02 0.0033 21.6 4.0 39 44-85 76-114 (319)
377 PRK13817 ribosome-binding fact 24.5 1.7E+02 0.0037 17.9 3.7 36 88-129 75-110 (119)
378 PF03652 UPF0081: Uncharacteri 24.4 1.8E+02 0.0039 18.1 3.9 48 37-84 43-96 (135)
379 KOG2868 Decapping enzyme compl 24.3 1.8E+02 0.0039 21.4 4.1 36 60-97 21-56 (335)
380 COG2999 GrxB Glutaredoxin 2 [P 24.2 87 0.0019 21.0 2.4 46 54-102 7-52 (215)
381 PHA02151 hypothetical protein 24.1 53 0.0011 21.4 1.4 15 43-57 202-216 (217)
382 COG1352 CheR Methylase of chem 24.0 2.6E+02 0.0056 19.9 4.9 39 47-85 96-139 (268)
383 COG3531 Predicted protein-disu 24.0 86 0.0019 21.3 2.4 28 46-73 2-29 (212)
384 cd03048 GST_N_Ure2p_like GST_N 23.9 1.3E+02 0.0029 16.2 3.9 49 51-102 4-56 (81)
385 PRK14811 formamidopyrimidine-D 23.6 17 0.00037 25.6 -0.9 11 54-64 256-266 (269)
386 PF11317 DUF3119: Protein of u 23.4 1.9E+02 0.0041 17.8 3.7 33 96-128 81-114 (116)
387 cd03375 TPP_OGFOR Thiamine pyr 22.2 1.4E+02 0.0031 19.7 3.3 27 26-52 156-182 (193)
388 TIGR03757 conj_TIGR03757 integ 22.1 73 0.0016 19.5 1.7 15 90-104 77-91 (113)
389 COG2761 FrnE Predicted dithiol 21.8 2.8E+02 0.0061 19.2 4.8 31 45-75 5-35 (225)
390 PF10686 DUF2493: Protein of u 21.7 1.6E+02 0.0034 16.2 5.8 57 47-103 5-63 (71)
391 TIGR03544 DivI1A_domain DivIVA 21.5 1E+02 0.0023 14.1 2.5 18 114-131 16-33 (34)
392 COG5309 Exo-beta-1,3-glucanase 21.3 2.9E+02 0.0063 20.0 4.6 98 31-132 63-165 (305)
393 PF11858 DUF3378: Domain of un 21.2 1.7E+02 0.0038 16.5 3.6 24 100-125 41-64 (81)
394 TIGR01287 nifH nitrogenase iro 21.2 59 0.0013 22.6 1.3 57 37-95 214-270 (275)
395 cd03042 GST_N_Zeta GST_N famil 20.8 1.4E+02 0.0031 15.4 5.8 49 51-102 4-56 (73)
396 KOG4578 Uncharacterized conser 20.7 1.9E+02 0.0041 21.5 3.7 83 27-111 47-130 (421)
397 PF02775 TPP_enzyme_C: Thiamin 20.6 2.3E+02 0.0049 17.6 3.9 29 23-51 123-153 (153)
398 PRK11633 cell division protein 20.5 1.8E+02 0.0039 20.1 3.5 48 84-131 161-213 (226)
No 1
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2e-27 Score=148.09 Aligned_cols=105 Identities=28% Similarity=0.619 Sum_probs=97.8
Q ss_pred CeEEeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCC-eEEEEEeCCCChhhHhhcCCCCccEE
Q 045454 23 NVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPS-MICLTVDVDELPEFSNSWGVTATPTF 101 (133)
Q Consensus 23 ~~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~id~d~~~~~~~~~~v~~~P~~ 101 (133)
....+.+..+|++.+.+ .+++|+|.|||+||++|+.+.|.|+++..+|.+ +.|+.+|+|++++++.+|+|.++||+
T Consensus 43 ~~~~~~s~~~~~~~Vi~---S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtv 119 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVIN---SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTV 119 (150)
T ss_pred ccccccCHHHHHHHHHc---cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEE
Confidence 45667788999998864 599999999999999999999999999999876 99999999999999999999999999
Q ss_pred EEEeCCeEEEEeeCC-CHHHHHHHHHHHHH
Q 045454 102 FFLKDGRQIDKLIGS-NKLELQRKTAAVSK 130 (133)
Q Consensus 102 ~~~~~g~~~~~~~g~-~~~~l~~~~~~~~~ 130 (133)
++|++|+.+.++.|. +.+.|.++++++++
T Consensus 120 lvfknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 120 LVFKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 999999999999999 99999999999875
No 2
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.8e-25 Score=134.32 Aligned_cols=102 Identities=43% Similarity=0.809 Sum_probs=90.9
Q ss_pred eechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCccEEEEEeC
Q 045454 27 ITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFLKD 106 (133)
Q Consensus 27 i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~ 106 (133)
+.+..+++.........+++++++|||+||++|+.+.|.+.+++.+|+++.|+.+|+|+++++++.++++.+||++++++
T Consensus 4 v~~~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~ 83 (106)
T KOG0907|consen 4 VETVSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKG 83 (106)
T ss_pred EEehhhHHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEEC
Confidence 44455666666655456799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeeCCCHHHHHHHHHHH
Q 045454 107 GRQIDKLIGSNKLELQRKTAAV 128 (133)
Q Consensus 107 g~~~~~~~g~~~~~l~~~~~~~ 128 (133)
|+.+.++.|.+..++++.+...
T Consensus 84 g~~~~~~vGa~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 84 GEEVDEVVGANKAELEKKIAKH 105 (106)
T ss_pred CEEEEEEecCCHHHHHHHHHhc
Confidence 9999999999888888877653
No 3
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.93 E-value=7.5e-25 Score=131.82 Aligned_cols=97 Identities=25% Similarity=0.414 Sum_probs=87.0
Q ss_pred chhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCCh---hhHhhcCCCCccEEEEEe
Q 045454 29 TMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELP---EFSNSWGVTATPTFFFLK 105 (133)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~---~~~~~~~v~~~P~~~~~~ 105 (133)
+.++|++.+.+. .+++++|.|||+||++|+.+.|.+.++++.++++.|+.+|.|+++ +++++|+|+++||+++|+
T Consensus 2 ~~~~~~~~i~~~--~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~ 79 (103)
T cd02985 2 SVEELDEALKKA--KGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYK 79 (103)
T ss_pred CHHHHHHHHHHc--CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEe
Confidence 567788887642 589999999999999999999999999999988999999999875 789999999999999999
Q ss_pred CCeEEEEeeCCCHHHHHHHHHH
Q 045454 106 DGRQIDKLIGSNKLELQRKTAA 127 (133)
Q Consensus 106 ~g~~~~~~~g~~~~~l~~~~~~ 127 (133)
+|+.+.++.|....+|.+.+..
T Consensus 80 ~G~~v~~~~G~~~~~l~~~~~~ 101 (103)
T cd02985 80 DGEKIHEEEGIGPDELIGDVLY 101 (103)
T ss_pred CCeEEEEEeCCCHHHHHHHHHh
Confidence 9999999999988888877654
No 4
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.93 E-value=4.2e-25 Score=133.70 Aligned_cols=85 Identities=21% Similarity=0.495 Sum_probs=77.2
Q ss_pred hhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCC-eEEEEEeCCCChhhHhhcCCCCccEEEEEeCCe
Q 045454 30 MVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPS-MICLTVDVDELPEFSNSWGVTATPTFFFLKDGR 108 (133)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~g~ 108 (133)
.++|++.+.. ..+++++|.|||+||++|+.+.|.+.+++.++++ +.|+.+|+|+++++.++|+|.++||+++|++|+
T Consensus 2 ~~~~~~~i~~--~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~ 79 (114)
T cd02954 2 GWAVDQAILS--EEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNK 79 (114)
T ss_pred HHHHHHHHhc--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCE
Confidence 4567777653 2688999999999999999999999999999987 789999999999999999999999999999999
Q ss_pred EEEEeeCC
Q 045454 109 QIDKLIGS 116 (133)
Q Consensus 109 ~~~~~~g~ 116 (133)
.+.+..|.
T Consensus 80 ~v~~~~G~ 87 (114)
T cd02954 80 HMKIDLGT 87 (114)
T ss_pred EEEEEcCC
Confidence 99999884
No 5
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.92 E-value=1.1e-23 Score=126.27 Aligned_cols=99 Identities=32% Similarity=0.596 Sum_probs=92.2
Q ss_pred eechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC-CeEEEEEeCCCChhhHhhcCCCCccEEEEEe
Q 045454 27 ITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP-SMICLTVDVDELPEFSNSWGVTATPTFFFLK 105 (133)
Q Consensus 27 i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~ 105 (133)
..+.++|++.+.. .+++++|+||++||++|+.+.|.+.++++.++ ++.|+.+|+++++.++++|++.++|++++++
T Consensus 3 ~lt~~~f~~~i~~---~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 79 (103)
T PF00085_consen 3 VLTDENFEKFINE---SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFK 79 (103)
T ss_dssp EESTTTHHHHHTT---TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEE
T ss_pred ECCHHHHHHHHHc---cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEE
Confidence 4567889998853 48999999999999999999999999999998 7999999999999999999999999999999
Q ss_pred CCeEEEEeeCC-CHHHHHHHHHHH
Q 045454 106 DGRQIDKLIGS-NKLELQRKTAAV 128 (133)
Q Consensus 106 ~g~~~~~~~g~-~~~~l~~~~~~~ 128 (133)
+|+.+.++.|. +.++|.++|+++
T Consensus 80 ~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 80 NGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp TTEEEEEEESSSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCHHHHHHHHHcC
Confidence 99999999999 999999999874
No 6
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.92 E-value=5.7e-24 Score=127.78 Aligned_cols=97 Identities=21% Similarity=0.486 Sum_probs=87.5
Q ss_pred EeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC--CeEEEEEeCCCChhhHhhcCCCCccEEEE
Q 045454 26 LITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP--SMICLTVDVDELPEFSNSWGVTATPTFFF 103 (133)
Q Consensus 26 ~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~id~d~~~~~~~~~~v~~~P~~~~ 103 (133)
.+.+.++|++.+ .++++++|+|||+||++|+.+.|.+.+++..++ .+.|+.+|+| +++++++|+++++||+++
T Consensus 3 ~i~~~~~~~~~i----~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~ 77 (102)
T cd02948 3 EINNQEEWEELL----SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLF 77 (102)
T ss_pred EccCHHHHHHHH----ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEE
Confidence 456778888876 368999999999999999999999999999886 3789999999 788999999999999999
Q ss_pred EeCCeEEEEeeCCCHHHHHHHHHH
Q 045454 104 LKDGRQIDKLIGSNKLELQRKTAA 127 (133)
Q Consensus 104 ~~~g~~~~~~~g~~~~~l~~~~~~ 127 (133)
|++|+.+.+..|.+...+.++|++
T Consensus 78 ~~~g~~~~~~~G~~~~~~~~~i~~ 101 (102)
T cd02948 78 YKNGELVAVIRGANAPLLNKTITE 101 (102)
T ss_pred EECCEEEEEEecCChHHHHHHHhh
Confidence 999999999999988999888875
No 7
>PHA02278 thioredoxin-like protein
Probab=99.92 E-value=8.2e-24 Score=126.89 Aligned_cols=92 Identities=18% Similarity=0.328 Sum_probs=80.5
Q ss_pred chhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC-CeEEEEEeCCCC----hhhHhhcCCCCccEEEE
Q 045454 29 TMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP-SMICLTVDVDEL----PEFSNSWGVTATPTFFF 103 (133)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~id~d~~----~~~~~~~~v~~~P~~~~ 103 (133)
+.++|.+.+ .++++++|+|||+||++|+.+.|.++++++++. .+.|+.+|+|.+ ++++++|+|+++||+++
T Consensus 3 ~~~~~~~~i----~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~ 78 (103)
T PHA02278 3 SLVDLNTAI----RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIG 78 (103)
T ss_pred CHHHHHHHH----hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEE
Confidence 456677776 478999999999999999999999999988753 477899999976 68999999999999999
Q ss_pred EeCCeEEEEeeCC-CHHHHHHH
Q 045454 104 LKDGRQIDKLIGS-NKLELQRK 124 (133)
Q Consensus 104 ~~~g~~~~~~~g~-~~~~l~~~ 124 (133)
|++|+.+.++.|. +.+.+.++
T Consensus 79 fk~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 79 YKDGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EECCEEEEEEeCCCCHHHHHhh
Confidence 9999999999997 87777653
No 8
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.9e-24 Score=146.16 Aligned_cols=106 Identities=28% Similarity=0.548 Sum_probs=95.9
Q ss_pred CeEEeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCC-eEEEEEeCCCChhhHhhcCCCCccEE
Q 045454 23 NVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPS-MICLTVDVDELPEFSNSWGVTATPTF 101 (133)
Q Consensus 23 ~~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~id~d~~~~~~~~~~v~~~P~~ 101 (133)
.+..+ |..+|++.+... ...+||+|+||+|||++|+.+.|.|+++...|+| +.+..+|+|.++.+..+|||+++||+
T Consensus 24 ~I~dv-T~anfe~~V~~~-S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV 101 (304)
T COG3118 24 GIKDV-TEANFEQEVIQS-SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTV 101 (304)
T ss_pred cceec-hHhHHHHHHHHH-ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeE
Confidence 35555 458899887765 5778999999999999999999999999999976 99999999999999999999999999
Q ss_pred EEEeCCeEEEEeeCC-CHHHHHHHHHHHHH
Q 045454 102 FFLKDGRQIDKLIGS-NKLELQRKTAAVSK 130 (133)
Q Consensus 102 ~~~~~g~~~~~~~g~-~~~~l~~~~~~~~~ 130 (133)
+.|++|+.+..+.|. ....+++|+++++.
T Consensus 102 ~af~dGqpVdgF~G~qPesqlr~~ld~~~~ 131 (304)
T COG3118 102 YAFKDGQPVDGFQGAQPESQLRQFLDKVLP 131 (304)
T ss_pred EEeeCCcCccccCCCCcHHHHHHHHHHhcC
Confidence 999999999999999 87899999998754
No 9
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.91 E-value=1.7e-23 Score=127.42 Aligned_cols=101 Identities=10% Similarity=0.048 Sum_probs=86.1
Q ss_pred cCeEEeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCC-eEEEEEeCCCChhhH-hhcCCCCcc
Q 045454 22 KNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPS-MICLTVDVDELPEFS-NSWGVTATP 99 (133)
Q Consensus 22 ~~~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~id~d~~~~~~-~~~~v~~~P 99 (133)
+.+.. .+.++|++.+.- ..++++++|.|||+||++|+.+.|.++++++.+++ +.|+.||++++++++ ++|+|.++|
T Consensus 9 ~~v~~-l~~~~f~~~~~v-~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~P 86 (113)
T cd03006 9 SPVLD-FYKGQLDYAEEL-RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFP 86 (113)
T ss_pred CCeEE-echhhhHHHHhc-ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccC
Confidence 33444 455778876432 25789999999999999999999999999999975 899999999999998 589999999
Q ss_pred EEEEEeCCeEEEEeeCC-CHHHHHHH
Q 045454 100 TFFFLKDGRQIDKLIGS-NKLELQRK 124 (133)
Q Consensus 100 ~~~~~~~g~~~~~~~g~-~~~~l~~~ 124 (133)
|+++|++|+....+.|. +.+.|..+
T Consensus 87 Tl~lf~~g~~~~~y~G~~~~~~i~~~ 112 (113)
T cd03006 87 VIHLYYRSRGPIEYKGPMRAPYMEKF 112 (113)
T ss_pred EEEEEECCccceEEeCCCCHHHHHhh
Confidence 99999999988899999 88888765
No 10
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.91 E-value=1.8e-23 Score=131.04 Aligned_cols=106 Identities=19% Similarity=0.365 Sum_probs=92.9
Q ss_pred eEEeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCC-eEEEEEeCCCChhhHhhcCCCCccEEE
Q 045454 24 VHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPS-MICLTVDVDELPEFSNSWGVTATPTFF 102 (133)
Q Consensus 24 ~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~id~d~~~~~~~~~~v~~~P~~~ 102 (133)
+..+.+.++|++.+... +++++||.|||+||++|+.+.|.|+++++++++ +.|+.+|+|+++++.++|+|++.|+++
T Consensus 5 l~~l~s~~e~d~~I~~~--~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~ 82 (142)
T PLN00410 5 LPHLHSGWAVDQAILAE--EERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVM 82 (142)
T ss_pred HhhhCCHHHHHHHHHhc--CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEE
Confidence 34567888999988743 789999999999999999999999999999987 788999999999999999999887666
Q ss_pred -EEeCCe-EEEEeeC--------C-CHHHHHHHHHHHHHh
Q 045454 103 -FLKDGR-QIDKLIG--------S-NKLELQRKTAAVSKL 131 (133)
Q Consensus 103 -~~~~g~-~~~~~~g--------~-~~~~l~~~~~~~~~~ 131 (133)
+|++|+ .+.+..| . +.++|.+.++.++..
T Consensus 83 ~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~ 122 (142)
T PLN00410 83 FFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRG 122 (142)
T ss_pred EEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHHH
Confidence 779998 8888888 5 888898888887654
No 11
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.91 E-value=3.3e-23 Score=123.00 Aligned_cols=93 Identities=25% Similarity=0.505 Sum_probs=83.1
Q ss_pred hHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCC-eEEEEEeCCCChhhHhhcCCCCccEEEEEeCCeEE
Q 045454 32 SWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPS-MICLTVDVDELPEFSNSWGVTATPTFFFLKDGRQI 110 (133)
Q Consensus 32 ~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~g~~~ 110 (133)
+|++.+.. ..+++++|+||++||++|+.+.|.+++++..+++ +.++.+|+++++.++++|++.++|++++|++|+.+
T Consensus 2 ~f~~~i~~--~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 2 NFQQVLQE--STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPV 79 (96)
T ss_pred ChHHHHHh--cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEe
Confidence 56666643 2478999999999999999999999999999864 88999999999999999999999999999999999
Q ss_pred EEeeCC-CHHHHHHHHH
Q 045454 111 DKLIGS-NKLELQRKTA 126 (133)
Q Consensus 111 ~~~~g~-~~~~l~~~~~ 126 (133)
.++.|. +.++|..+++
T Consensus 80 ~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 80 DGFQGAQPEEQLRQMLD 96 (96)
T ss_pred eeecCCCCHHHHHHHhC
Confidence 999998 8888888763
No 12
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.91 E-value=2.7e-23 Score=124.56 Aligned_cols=92 Identities=24% Similarity=0.430 Sum_probs=83.2
Q ss_pred chhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCC-eEEEEEeCCCChhhHhhcCCCCccEEEEEeCC
Q 045454 29 TMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPS-MICLTVDVDELPEFSNSWGVTATPTFFFLKDG 107 (133)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~g 107 (133)
+.++|++.+ .++++++|+||++||++|+.+.|.+.++++.+++ +.|+.+|+++++.++++|+++++||+++|++|
T Consensus 7 ~~~~f~~~v----~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 82 (101)
T cd03003 7 DRGDFDAAV----NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPSG 82 (101)
T ss_pred CHhhHHHHh----cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcCC
Confidence 567888877 3569999999999999999999999999999965 89999999999999999999999999999999
Q ss_pred eEEEEeeCC-CHHHHHHH
Q 045454 108 RQIDKLIGS-NKLELQRK 124 (133)
Q Consensus 108 ~~~~~~~g~-~~~~l~~~ 124 (133)
+.+.++.|. +.+.|.++
T Consensus 83 ~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 83 MNPEKYYGDRSKESLVKF 100 (101)
T ss_pred CCcccCCCCCCHHHHHhh
Confidence 988899998 88877664
No 13
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.91 E-value=3.6e-23 Score=126.36 Aligned_cols=92 Identities=20% Similarity=0.305 Sum_probs=85.1
Q ss_pred CcCeEEeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCccE
Q 045454 21 SKNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPT 100 (133)
Q Consensus 21 ~~~~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~P~ 100 (133)
.+.+..+.+.++|.+.+ .++++++|+||++||++|+.+.|.+++++++++++.|+.+|.+++++++++|++..+||
T Consensus 3 ~g~v~~i~~~~~~~~~i----~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt 78 (113)
T cd02989 3 HGKYREVSDEKEFFEIV----KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPT 78 (113)
T ss_pred CCCeEEeCCHHHHHHHH----hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCE
Confidence 46778888888888887 35789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCeEEEEeeCC
Q 045454 101 FFFLKDGRQIDKLIGS 116 (133)
Q Consensus 101 ~~~~~~g~~~~~~~g~ 116 (133)
+++|++|+.+.++.|.
T Consensus 79 ~l~fk~G~~v~~~~g~ 94 (113)
T cd02989 79 VILFKNGKTVDRIVGF 94 (113)
T ss_pred EEEEECCEEEEEEECc
Confidence 9999999999988775
No 14
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.91 E-value=2.7e-23 Score=126.63 Aligned_cols=99 Identities=16% Similarity=0.270 Sum_probs=87.0
Q ss_pred echhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC--CeEEEEEeCCCChhhHhhcCCCCccEEEEEe
Q 045454 28 TTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP--SMICLTVDVDELPEFSNSWGVTATPTFFFLK 105 (133)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~ 105 (133)
.+..+|++.+... ..+++++|+||++||++|+.+.|.+.++++.++ ++.++.+|++.++.++++|+|+++||+++|+
T Consensus 9 ~~~~~~~~~~~~~-~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~ 87 (111)
T cd02963 9 LTFSQYENEIVPK-SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGII 87 (111)
T ss_pred eeHHHHHHhhccc-cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEE
Confidence 3566777654321 368999999999999999999999999999885 5899999999999999999999999999999
Q ss_pred CCeEEEEeeCC-CHHHHHHHHHH
Q 045454 106 DGRQIDKLIGS-NKLELQRKTAA 127 (133)
Q Consensus 106 ~g~~~~~~~g~-~~~~l~~~~~~ 127 (133)
+|+.+.+..|. +.+.|.+++++
T Consensus 88 ~g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 88 NGQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred CCEEEEEecCCCCHHHHHHHHhc
Confidence 99999999998 88999988875
No 15
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.90 E-value=2.7e-23 Score=124.34 Aligned_cols=91 Identities=16% Similarity=0.280 Sum_probs=80.5
Q ss_pred hHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCC-CChhhHhhcCCCCccEEEEEeCCeEE
Q 045454 32 SWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVD-ELPEFSNSWGVTATPTFFFLKDGRQI 110 (133)
Q Consensus 32 ~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d-~~~~~~~~~~v~~~P~~~~~~~g~~~ 110 (133)
++.+.+.. .++++++|.|||+||++|+.+.|.++++++.++++.++.+|.+ +++.++++|++.++||+++|++| .+
T Consensus 8 ~~~~~~~~--~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~ 84 (100)
T cd02999 8 IALDLMAF--NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PR 84 (100)
T ss_pred HHHHHHHh--cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ce
Confidence 44444443 4789999999999999999999999999999988999999999 89999999999999999999988 77
Q ss_pred EEeeCC-CHHHHHHHH
Q 045454 111 DKLIGS-NKLELQRKT 125 (133)
Q Consensus 111 ~~~~g~-~~~~l~~~~ 125 (133)
.++.|. +.+.|.+|+
T Consensus 85 ~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 85 VRYNGTRTLDSLAAFY 100 (100)
T ss_pred eEecCCCCHHHHHhhC
Confidence 899998 888887764
No 16
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.90 E-value=1.5e-22 Score=124.13 Aligned_cols=98 Identities=12% Similarity=0.131 Sum_probs=87.6
Q ss_pred echhhHHHHHhhhhhCCcEEEEEEecCCChh--hh--hhhHHHHHHHhhC--C-CeEEEEEeCCCChhhHhhcCCCCccE
Q 045454 28 TTMVSWEAKVSESIKDGKIVVANFSAQWCSP--CK--KIAPVYIQLADKY--P-SMICLTVDVDELPEFSNSWGVTATPT 100 (133)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~--C~--~~~~~l~~~~~~~--~-~v~~~~id~d~~~~~~~~~~v~~~P~ 100 (133)
.+.++|++.+. .++.++|+.||+.||++ |+ ...|.+.+++.++ + ++.|+.+|+|++++++++|+|+++||
T Consensus 14 lt~~nF~~~v~---~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iPT 90 (120)
T cd03065 14 LNEKNYKQVLK---KYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEEDS 90 (120)
T ss_pred CChhhHHHHHH---hCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccccE
Confidence 35689999886 35789999999999976 99 8889999988876 4 59999999999999999999999999
Q ss_pred EEEEeCCeEEEEeeCC-CHHHHHHHHHHHH
Q 045454 101 FFFLKDGRQIDKLIGS-NKLELQRKTAAVS 129 (133)
Q Consensus 101 ~~~~~~g~~~~~~~g~-~~~~l~~~~~~~~ 129 (133)
+++|++|+.+. +.|. +.+.|.++++++.
T Consensus 91 l~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 91 IYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred EEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 99999999887 9999 9999999999875
No 17
>PRK09381 trxA thioredoxin; Provisional
Probab=99.90 E-value=3.6e-22 Score=121.18 Aligned_cols=103 Identities=27% Similarity=0.565 Sum_probs=90.8
Q ss_pred CeEEeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCC-eEEEEEeCCCChhhHhhcCCCCccEE
Q 045454 23 NVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPS-MICLTVDVDELPEFSNSWGVTATPTF 101 (133)
Q Consensus 23 ~~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~id~d~~~~~~~~~~v~~~P~~ 101 (133)
.+..+ +.++|.+.+. ..+++++|+||++||++|+.+.|.++++++.+++ +.++.+|++.++.+.++|+++++|++
T Consensus 4 ~v~~~-~~~~~~~~v~---~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 79 (109)
T PRK09381 4 KIIHL-TDDSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTL 79 (109)
T ss_pred cceee-ChhhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEE
Confidence 34555 4477887664 3588999999999999999999999999999954 89999999999999999999999999
Q ss_pred EEEeCCeEEEEeeCC-CHHHHHHHHHHHH
Q 045454 102 FFLKDGRQIDKLIGS-NKLELQRKTAAVS 129 (133)
Q Consensus 102 ~~~~~g~~~~~~~g~-~~~~l~~~~~~~~ 129 (133)
++|++|+.+.++.|. +.++|..++++.+
T Consensus 80 ~~~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 80 LLFKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 999999999999999 8999999988765
No 18
>PTZ00051 thioredoxin; Provisional
Probab=99.90 E-value=2.1e-22 Score=119.94 Aligned_cols=96 Identities=38% Similarity=0.803 Sum_probs=87.3
Q ss_pred eEEeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCccEEEE
Q 045454 24 VHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFF 103 (133)
Q Consensus 24 ~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~P~~~~ 103 (133)
+..+.+.+++.+.+ ..+++++|+||++||++|+.+.+.+.++++.++++.++.+|+++++.++++|++.++|++++
T Consensus 2 v~~i~~~~~~~~~~----~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 77 (98)
T PTZ00051 2 VHIVTSQAEFESTL----SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKV 77 (98)
T ss_pred eEEecCHHHHHHHH----hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEE
Confidence 45677777887766 46899999999999999999999999999999899999999999999999999999999999
Q ss_pred EeCCeEEEEeeCCCHHHHHH
Q 045454 104 LKDGRQIDKLIGSNKLELQR 123 (133)
Q Consensus 104 ~~~g~~~~~~~g~~~~~l~~ 123 (133)
+++|+.+.++.|...++|.+
T Consensus 78 ~~~g~~~~~~~G~~~~~~~~ 97 (98)
T PTZ00051 78 FKNGSVVDTLLGANDEALKQ 97 (98)
T ss_pred EeCCeEEEEEeCCCHHHhhc
Confidence 99999999999997777754
No 19
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.90 E-value=1.1e-22 Score=122.54 Aligned_cols=94 Identities=17% Similarity=0.269 Sum_probs=83.4
Q ss_pred chhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC-CeEEEEEeCCCChhhHhhcCCCCccEEEEEeCC
Q 045454 29 TMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP-SMICLTVDVDELPEFSNSWGVTATPTFFFLKDG 107 (133)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~g 107 (133)
+.++|++.+.. .+++++|.||++||++|+.+.|.++++++.++ .+.|+.+|++++++++++|+|+++||+++|++|
T Consensus 7 ~~~~f~~~i~~---~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 83 (104)
T cd03004 7 TPEDFPELVLN---RKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYPGN 83 (104)
T ss_pred CHHHHHHHHhc---CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEcCC
Confidence 56788887753 46799999999999999999999999999985 489999999999999999999999999999877
Q ss_pred -eEEEEeeCC-C-HHHHHHHH
Q 045454 108 -RQIDKLIGS-N-KLELQRKT 125 (133)
Q Consensus 108 -~~~~~~~g~-~-~~~l~~~~ 125 (133)
+.+..+.|. + .++|.+|+
T Consensus 84 ~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 84 ASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred CCCceEccCCCCCHHHHHhhC
Confidence 889999998 6 88877653
No 20
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.90 E-value=2.6e-23 Score=125.15 Aligned_cols=98 Identities=15% Similarity=0.314 Sum_probs=84.6
Q ss_pred hhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCC-eEEEEEeCCCChhhHhhcCCCCccEEEEEeCCe
Q 045454 30 MVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPS-MICLTVDVDELPEFSNSWGVTATPTFFFLKDGR 108 (133)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~g~ 108 (133)
.++|++.+..+ +++++||.|+|+||++|+.+.|.++++++++++ +.|+.+|+|+.+++.++|++.+.||++||++|+
T Consensus 2 ~~~~d~~i~~~--~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngk 79 (114)
T cd02986 2 KKEVDQAIKST--AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQ 79 (114)
T ss_pred HHHHHHHHHhc--CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCc
Confidence 35677777654 799999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred EEEEeeCC-----------CHHHHHHHHHHHH
Q 045454 109 QIDKLIGS-----------NKLELQRKTAAVS 129 (133)
Q Consensus 109 ~~~~~~g~-----------~~~~l~~~~~~~~ 129 (133)
.+....|. +.+++.+.++.+.
T Consensus 80 h~~~d~gt~~~~k~~~~~~~k~~~idi~e~~y 111 (114)
T cd02986 80 HMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY 111 (114)
T ss_pred EEEEecCCCCCcEEEEEcCchhHHHHHHHHHH
Confidence 99866653 4466666665543
No 21
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.89 E-value=2.2e-22 Score=122.94 Aligned_cols=93 Identities=24% Similarity=0.410 Sum_probs=83.3
Q ss_pred CcCeEEeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCccE
Q 045454 21 SKNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPT 100 (133)
Q Consensus 21 ~~~~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~P~ 100 (133)
.+.+..+++ ++|.+.+... ..+++++|+||++||++|+.+.|.+++++++++++.|+.+|++++ .++++|++.++||
T Consensus 3 ~g~v~~i~~-~~f~~~i~~~-~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~~Pt 79 (113)
T cd02957 3 FGEVREISS-KEFLEEVTKA-SKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKVLPT 79 (113)
T ss_pred CceEEEEcH-HHHHHHHHcc-CCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCcCCE
Confidence 456777877 8898888642 224899999999999999999999999999999999999999999 9999999999999
Q ss_pred EEEEeCCeEEEEeeCC
Q 045454 101 FFFLKDGRQIDKLIGS 116 (133)
Q Consensus 101 ~~~~~~g~~~~~~~g~ 116 (133)
+++|++|+.+.++.|.
T Consensus 80 ~~~f~~G~~v~~~~G~ 95 (113)
T cd02957 80 LLVYKNGELIDNIVGF 95 (113)
T ss_pred EEEEECCEEEEEEecH
Confidence 9999999999999885
No 22
>PRK10996 thioredoxin 2; Provisional
Probab=99.89 E-value=8.3e-22 Score=124.42 Aligned_cols=105 Identities=24% Similarity=0.453 Sum_probs=91.4
Q ss_pred ccCcCeEEeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC-CeEEEEEeCCCChhhHhhcCCCC
Q 045454 19 FASKNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP-SMICLTVDVDELPEFSNSWGVTA 97 (133)
Q Consensus 19 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~id~d~~~~~~~~~~v~~ 97 (133)
...+.+... +..+|++.+ .++++++|+||++||++|+.+.|.+.++++.+. ++.++.+|.++++.++++|+|.+
T Consensus 32 ~~~~~~i~~-~~~~~~~~i----~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~ 106 (139)
T PRK10996 32 LFDGEVINA-TGETLDKLL----QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRS 106 (139)
T ss_pred cCCCCCEEc-CHHHHHHHH----hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCc
Confidence 334444443 567777765 468999999999999999999999999998875 59999999999999999999999
Q ss_pred ccEEEEEeCCeEEEEeeCC-CHHHHHHHHHHH
Q 045454 98 TPTFFFLKDGRQIDKLIGS-NKLELQRKTAAV 128 (133)
Q Consensus 98 ~P~~~~~~~g~~~~~~~g~-~~~~l~~~~~~~ 128 (133)
+|++++|++|+.+.++.|. +.+.+.++++++
T Consensus 107 ~Ptlii~~~G~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 107 IPTIMIFKNGQVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred cCEEEEEECCEEEEEEcCCCCHHHHHHHHHHh
Confidence 9999999999999999999 888899999875
No 23
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.89 E-value=5.7e-22 Score=117.81 Aligned_cols=94 Identities=34% Similarity=0.746 Sum_probs=84.3
Q ss_pred hhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhh-CCCeEEEEEeCCCChhhHhhcCCCCccEEEEEeCCe
Q 045454 30 MVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADK-YPSMICLTVDVDELPEFSNSWGVTATPTFFFLKDGR 108 (133)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~-~~~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~g~ 108 (133)
.++|++.+... .+++++|+||++||++|+.+.+.|+++++. .+++.++.+|.+++++++++|++.++||+++|.+|+
T Consensus 2 ~~~~~~~~~~~--~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 79 (97)
T cd02984 2 EEEFEELLKSD--ASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT 79 (97)
T ss_pred HHHHHHHHhhC--CCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCE
Confidence 46777777653 369999999999999999999999999988 567999999999999999999999999999999999
Q ss_pred EEEEeeCCCHHHHHHHH
Q 045454 109 QIDKLIGSNKLELQRKT 125 (133)
Q Consensus 109 ~~~~~~g~~~~~l~~~~ 125 (133)
.+.+..|.+.++|.+.+
T Consensus 80 ~~~~~~g~~~~~l~~~~ 96 (97)
T cd02984 80 IVDRVSGADPKELAKKV 96 (97)
T ss_pred EEEEEeCCCHHHHHHhh
Confidence 99999999888887765
No 24
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.88 E-value=5.3e-22 Score=120.32 Aligned_cols=97 Identities=20% Similarity=0.410 Sum_probs=82.0
Q ss_pred eEEeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhC----C---CeEEEEEeCCCChhhHhhcCCC
Q 045454 24 VHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKY----P---SMICLTVDVDELPEFSNSWGVT 96 (133)
Q Consensus 24 ~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~----~---~v~~~~id~d~~~~~~~~~~v~ 96 (133)
+..+ +.++|++.+ ..+++++|.||++||++|+++.|.+.++++.+ + .+.++.+|++++++++++|+++
T Consensus 3 v~~l-~~~~f~~~i----~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~ 77 (108)
T cd02996 3 IVSL-TSGNIDDIL----QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRIN 77 (108)
T ss_pred eEEc-CHhhHHHHH----hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCC
Confidence 3444 567888876 35789999999999999999999999988764 2 3889999999999999999999
Q ss_pred CccEEEEEeCCe-EEEEeeCC-CHHHHHHHH
Q 045454 97 ATPTFFFLKDGR-QIDKLIGS-NKLELQRKT 125 (133)
Q Consensus 97 ~~P~~~~~~~g~-~~~~~~g~-~~~~l~~~~ 125 (133)
++||+++|++|+ ....+.|. +.+.|.+||
T Consensus 78 ~~Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 78 KYPTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred cCCEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 999999999998 44677788 888887764
No 25
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.88 E-value=6.8e-22 Score=119.02 Aligned_cols=90 Identities=20% Similarity=0.308 Sum_probs=82.2
Q ss_pred chhhHHHHHhhhhhCCcEEEEEEecCC--ChhhhhhhHHHHHHHhhCCC-eEEEEEeCCCChhhHhhcCCCCccEEEEEe
Q 045454 29 TMVSWEAKVSESIKDGKIVVANFSAQW--CSPCKKIAPVYIQLADKYPS-MICLTVDVDELPEFSNSWGVTATPTFFFLK 105 (133)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~lv~f~~~~--C~~C~~~~~~l~~~~~~~~~-v~~~~id~d~~~~~~~~~~v~~~P~~~~~~ 105 (133)
+..+|++.+ ..+.+++|.||++| ||+|+.+.|.+.++++++++ +.|+.+|++++++++.+|+|+++||+++|+
T Consensus 16 ~~~~~~~~~----~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fk 91 (111)
T cd02965 16 DAATLDDWL----AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFR 91 (111)
T ss_pred ccccHHHHH----hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEE
Confidence 567888766 46889999999997 99999999999999999987 889999999999999999999999999999
Q ss_pred CCeEEEEeeCC-CHHHHH
Q 045454 106 DGRQIDKLIGS-NKLELQ 122 (133)
Q Consensus 106 ~g~~~~~~~g~-~~~~l~ 122 (133)
+|+.+.++.|. +..++.
T Consensus 92 dGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 92 DGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred CCEEEEEEeCccCHHHHh
Confidence 99999999998 777664
No 26
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.88 E-value=1.7e-21 Score=116.68 Aligned_cols=96 Identities=29% Similarity=0.513 Sum_probs=82.1
Q ss_pred eEEeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC--CeEEEEEeCCCChhhHhhcCCCCccEE
Q 045454 24 VHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP--SMICLTVDVDELPEFSNSWGVTATPTF 101 (133)
Q Consensus 24 ~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~id~d~~~~~~~~~~v~~~P~~ 101 (133)
+..+ +.++|++.+ ++. ++|.|||+||++|+.+.|.+.++++.++ ++.+..+|+++++.++++|++.++||+
T Consensus 3 v~~l-~~~~f~~~~-----~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~ 75 (101)
T cd02994 3 VVEL-TDSNWTLVL-----EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTI 75 (101)
T ss_pred eEEc-ChhhHHHHh-----CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEE
Confidence 4444 567888765 233 6899999999999999999999998774 589999999999999999999999999
Q ss_pred EEEeCCeEEEEeeCC-CHHHHHHHHHH
Q 045454 102 FFLKDGRQIDKLIGS-NKLELQRKTAA 127 (133)
Q Consensus 102 ~~~~~g~~~~~~~g~-~~~~l~~~~~~ 127 (133)
+++++|+. .++.|. +.++|..++++
T Consensus 76 ~~~~~g~~-~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 76 YHAKDGVF-RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred EEeCCCCE-EEecCCCCHHHHHHHHhC
Confidence 99999985 788898 88889888763
No 27
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.87 E-value=1.7e-21 Score=116.70 Aligned_cols=92 Identities=30% Similarity=0.589 Sum_probs=80.9
Q ss_pred chhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC----CeEEEEEeCCCChhhHhhcCCCCccEEEEE
Q 045454 29 TMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP----SMICLTVDVDELPEFSNSWGVTATPTFFFL 104 (133)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~id~d~~~~~~~~~~v~~~P~~~~~ 104 (133)
+.++|++.+. ++ +++|+||++||++|+.+.|.+.++++.+. .+.++.+|++.++.++++|++.++|++++|
T Consensus 6 ~~~~f~~~~~----~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 80 (102)
T cd03005 6 TEDNFDHHIA----EG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLF 80 (102)
T ss_pred CHHHHHHHhh----cC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEE
Confidence 4567887773 23 59999999999999999999999988874 489999999999999999999999999999
Q ss_pred eCCeEEEEeeCC-CHHHHHHHH
Q 045454 105 KDGRQIDKLIGS-NKLELQRKT 125 (133)
Q Consensus 105 ~~g~~~~~~~g~-~~~~l~~~~ 125 (133)
++|+.+.++.|. +.++|.++|
T Consensus 81 ~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 81 KDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred eCCCeeeEeeCCCCHHHHHhhC
Confidence 999999899999 888877664
No 28
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.87 E-value=3e-21 Score=126.00 Aligned_cols=95 Identities=15% Similarity=0.248 Sum_probs=85.5
Q ss_pred cCcCeEEeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCcc
Q 045454 20 ASKNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATP 99 (133)
Q Consensus 20 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~P 99 (133)
..+.+..+++.++|.+.+... ..+.++||+||++||++|+.+.|.|..++..++.+.|+.||+++. .+..+|++.++|
T Consensus 60 ~~g~v~ei~~~~~f~~~v~~~-~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~~vP 137 (175)
T cd02987 60 RFGKVYELDSGEQFLDAIDKE-GKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTDALP 137 (175)
T ss_pred CCCeEEEcCCHHHHHHHHHhc-CCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCCCCC
Confidence 478888888878999888643 234699999999999999999999999999999999999999988 899999999999
Q ss_pred EEEEEeCCeEEEEeeCC
Q 045454 100 TFFFLKDGRQIDKLIGS 116 (133)
Q Consensus 100 ~~~~~~~g~~~~~~~g~ 116 (133)
|+++|++|+.+.++.|.
T Consensus 138 Tlllyk~G~~v~~~vG~ 154 (175)
T cd02987 138 ALLVYKGGELIGNFVRV 154 (175)
T ss_pred EEEEEECCEEEEEEech
Confidence 99999999999988875
No 29
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.87 E-value=4.5e-21 Score=121.41 Aligned_cols=90 Identities=28% Similarity=0.545 Sum_probs=80.4
Q ss_pred hhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC-CeEEEEEeCCCC--hhhHhhcCCCCccEEEEE-eCCeEEEEeeCC
Q 045454 41 IKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP-SMICLTVDVDEL--PEFSNSWGVTATPTFFFL-KDGRQIDKLIGS 116 (133)
Q Consensus 41 ~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~id~d~~--~~~~~~~~v~~~P~~~~~-~~g~~~~~~~g~ 116 (133)
..++++++|+||++||++|+.+.|.+.++++.+. .+.|+.++++.. ..++++|+|.++|++++| ++|+++.++.|.
T Consensus 17 ~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~ 96 (142)
T cd02950 17 LSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEGQSIGL 96 (142)
T ss_pred HhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEEEEeCC
Confidence 3578999999999999999999999999999885 477888888754 578999999999999999 689999999999
Q ss_pred -CHHHHHHHHHHHHH
Q 045454 117 -NKLELQRKTAAVSK 130 (133)
Q Consensus 117 -~~~~l~~~~~~~~~ 130 (133)
+.++|.++++++++
T Consensus 97 ~~~~~l~~~l~~l~~ 111 (142)
T cd02950 97 QPKQVLAQNLDALVA 111 (142)
T ss_pred CCHHHHHHHHHHHHc
Confidence 88889999998875
No 30
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.87 E-value=1.2e-20 Score=127.03 Aligned_cols=109 Identities=19% Similarity=0.333 Sum_probs=93.8
Q ss_pred cCeEEeechhhHHHHHhhhh-hCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCC-eEEEEEeCCCChhhHhhcCCCCcc
Q 045454 22 KNVHLITTMVSWEAKVSESI-KDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPS-MICLTVDVDELPEFSNSWGVTATP 99 (133)
Q Consensus 22 ~~~~~i~~~~~~~~~~~~~~-~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~id~d~~~~~~~~~~v~~~P 99 (133)
+.+..+ +.++|++.+.... ..+++++|+||++||++|+.+.|.++++++.+++ +.+..+|++++++++++|+|+++|
T Consensus 30 ~~Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~P 108 (224)
T PTZ00443 30 NALVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYP 108 (224)
T ss_pred CCcEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCC
Confidence 444544 5689998775431 2368999999999999999999999999999975 889999999999999999999999
Q ss_pred EEEEEeCCeEEEEeeCC-CHHHHHHHHHHHHHh
Q 045454 100 TFFFLKDGRQIDKLIGS-NKLELQRKTAAVSKL 131 (133)
Q Consensus 100 ~~~~~~~g~~~~~~~g~-~~~~l~~~~~~~~~~ 131 (133)
|+++|++|+.+....|. +.++|.+++.+..+.
T Consensus 109 Tl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~~ 141 (224)
T PTZ00443 109 TLLLFDKGKMYQYEGGDRSTEKLAAFALGDFKK 141 (224)
T ss_pred EEEEEECCEEEEeeCCCCCHHHHHHHHHHHHHh
Confidence 99999999998888887 999999999877653
No 31
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.87 E-value=5.1e-21 Score=115.95 Aligned_cols=94 Identities=21% Similarity=0.433 Sum_probs=81.9
Q ss_pred chhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCC-eEEEEEeCCC--ChhhHhhcCCCCccEEEEEe
Q 045454 29 TMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPS-MICLTVDVDE--LPEFSNSWGVTATPTFFFLK 105 (133)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~id~d~--~~~~~~~~~v~~~P~~~~~~ 105 (133)
+.++|++.+.. .+++++|+||++||++|+.+.|.+.++++.+++ +.++.+|++. +++++++|+++++|++++|.
T Consensus 6 ~~~~~~~~i~~---~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~ 82 (109)
T cd03002 6 TPKNFDKVVHN---TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFR 82 (109)
T ss_pred chhhHHHHHhc---CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEe
Confidence 45788887753 578899999999999999999999999998864 8899999998 88999999999999999997
Q ss_pred CCe-----EEEEeeCC-CHHHHHHHH
Q 045454 106 DGR-----QIDKLIGS-NKLELQRKT 125 (133)
Q Consensus 106 ~g~-----~~~~~~g~-~~~~l~~~~ 125 (133)
+|+ ....+.|. +.+.|.+|+
T Consensus 83 ~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 83 PPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred CCCcccccccccccCccCHHHHHHHh
Confidence 775 45677888 888888876
No 32
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.87 E-value=9.5e-21 Score=112.93 Aligned_cols=96 Identities=29% Similarity=0.687 Sum_probs=85.7
Q ss_pred hhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC-CeEEEEEeCCCChhhHhhcCCCCccEEEEEeCCe
Q 045454 30 MVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP-SMICLTVDVDELPEFSNSWGVTATPTFFFLKDGR 108 (133)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~g~ 108 (133)
.++|.+.+. .++++++|+||++||++|+.+.+.++++++.++ ++.++.+|++.++.+.++|++..+|+++++++|+
T Consensus 3 ~~~~~~~~~---~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 3 DANFDETIA---SSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred HHHHHHHHh---hcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc
Confidence 456666664 346799999999999999999999999998886 5999999999999999999999999999999999
Q ss_pred EEEEeeCC-CHHHHHHHHHHH
Q 045454 109 QIDKLIGS-NKLELQRKTAAV 128 (133)
Q Consensus 109 ~~~~~~g~-~~~~l~~~~~~~ 128 (133)
.+..+.|. +.+++.+++++.
T Consensus 80 ~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 80 EVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred EeeeecCCCCHHHHHHHHHhh
Confidence 99999998 889999998865
No 33
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.86 E-value=1.1e-20 Score=120.47 Aligned_cols=92 Identities=18% Similarity=0.448 Sum_probs=79.8
Q ss_pred cCeEEeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC--CeEEEEEeCCCChhhHhhcCCCC--
Q 045454 22 KNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP--SMICLTVDVDELPEFSNSWGVTA-- 97 (133)
Q Consensus 22 ~~~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~id~d~~~~~~~~~~v~~-- 97 (133)
..+..+ +.++|++.+.. ..+++++|+||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|+|.+
T Consensus 28 ~~v~~l-~~~~f~~~l~~--~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~ 104 (152)
T cd02962 28 EHIKYF-TPKTLEEELER--DKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSP 104 (152)
T ss_pred CccEEc-CHHHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecC
Confidence 444444 45778887753 246799999999999999999999999999885 49999999999999999999988
Q ss_pred ----ccEEEEEeCCeEEEEeeCC
Q 045454 98 ----TPTFFFLKDGRQIDKLIGS 116 (133)
Q Consensus 98 ----~P~~~~~~~g~~~~~~~g~ 116 (133)
+||+++|++|+.+.++.|.
T Consensus 105 ~v~~~PT~ilf~~Gk~v~r~~G~ 127 (152)
T cd02962 105 LSKQLPTIILFQGGKEVARRPYY 127 (152)
T ss_pred CcCCCCEEEEEECCEEEEEEecc
Confidence 9999999999999999973
No 34
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.86 E-value=1.2e-20 Score=115.17 Aligned_cols=90 Identities=22% Similarity=0.308 Sum_probs=80.1
Q ss_pred hhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCccEEEEEeCCeEEE--EeeCC-C
Q 045454 41 IKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFLKDGRQID--KLIGS-N 117 (133)
Q Consensus 41 ~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~g~~~~--~~~g~-~ 117 (133)
+.+...++|+||++||++|+.+.|.+++++..++.+.+..+|.++++++..+|++.++||++++++|+... ++.|. +
T Consensus 19 l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~ 98 (113)
T cd02975 19 MKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPA 98 (113)
T ss_pred hCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCc
Confidence 35677788999999999999999999999988877999999999999999999999999999998765444 68888 8
Q ss_pred HHHHHHHHHHHHH
Q 045454 118 KLELQRKTAAVSK 130 (133)
Q Consensus 118 ~~~l~~~~~~~~~ 130 (133)
..++.+++..++.
T Consensus 99 ~~el~~~i~~i~~ 111 (113)
T cd02975 99 GYEFASLIEDIVR 111 (113)
T ss_pred hHHHHHHHHHHHh
Confidence 8999999988764
No 35
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=4.9e-21 Score=127.74 Aligned_cols=106 Identities=39% Similarity=0.773 Sum_probs=99.7
Q ss_pred CeEEeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCccEEE
Q 045454 23 NVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFF 102 (133)
Q Consensus 23 ~~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~P~~~ 102 (133)
+++.+.+.++|...+..+ ..+.++|.|+|.||++|++..|.+..++.+|++..|+.+|+|+....+.-+||.+.||++
T Consensus 2 ~Vi~v~~d~df~~~ls~a--g~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFi 79 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSAA--GGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFI 79 (288)
T ss_pred CeEEecCcHHHHHhhhcc--CceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEE
Confidence 577888999999988764 789999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeEEEEeeCCCHHHHHHHHHHHHH
Q 045454 103 FLKDGRQIDKLIGSNKLELQRKTAAVSK 130 (133)
Q Consensus 103 ~~~~g~~~~~~~g~~~~~l~~~~~~~~~ 130 (133)
+|++|..+.++.|.+..-|+..++++..
T Consensus 80 ff~ng~kid~~qGAd~~gLe~kv~~~~s 107 (288)
T KOG0908|consen 80 FFRNGVKIDQIQGADASGLEEKVAKYAS 107 (288)
T ss_pred EEecCeEeeeecCCCHHHHHHHHHHHhc
Confidence 9999999999999999999999998764
No 36
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.86 E-value=7.6e-21 Score=113.67 Aligned_cols=96 Identities=25% Similarity=0.469 Sum_probs=84.6
Q ss_pred chhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC---CeEEEEEeCCCChhhHhhcCCCCccEEEEEe
Q 045454 29 TMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP---SMICLTVDVDELPEFSNSWGVTATPTFFFLK 105 (133)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~ 105 (133)
+.++|++.+ .++++++|+||++||++|+.+.+.+++++..+. ++.++.+|+++++.++++|+++++|++++++
T Consensus 2 ~~~~~~~~~----~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~ 77 (102)
T TIGR01126 2 TASNFDDIV----LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFP 77 (102)
T ss_pred chhhHHHHh----ccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEec
Confidence 345677666 368999999999999999999999999998885 4999999999999999999999999999998
Q ss_pred CCeEEEEeeCC-CHHHHHHHHHHH
Q 045454 106 DGRQIDKLIGS-NKLELQRKTAAV 128 (133)
Q Consensus 106 ~g~~~~~~~g~-~~~~l~~~~~~~ 128 (133)
+|+.+..+.|. +.++|..++++.
T Consensus 78 ~~~~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 78 KGKKPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred CCCcceeecCCCCHHHHHHHHHhc
Confidence 77767789999 889999988764
No 37
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.85 E-value=2.1e-20 Score=111.25 Aligned_cols=84 Identities=23% Similarity=0.544 Sum_probs=78.5
Q ss_pred hCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC-CeEEEEEeCCCChhhHhhcCCCCccEEEEEeCCeEEEEeeCC-CHH
Q 045454 42 KDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP-SMICLTVDVDELPEFSNSWGVTATPTFFFLKDGRQIDKLIGS-NKL 119 (133)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~ 119 (133)
.++++++++||++||+.|+.+.|.+.++++.++ ++.++.+|.++++++.+++++.++|+++++++|+.+.++.|. +.+
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~~~ 90 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGVKMKS 90 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCCccHH
Confidence 578999999999999999999999999998886 489999999999999999999999999999999999999999 888
Q ss_pred HHHHHH
Q 045454 120 ELQRKT 125 (133)
Q Consensus 120 ~l~~~~ 125 (133)
++.+++
T Consensus 91 ~~~~~l 96 (97)
T cd02949 91 EYREFI 96 (97)
T ss_pred HHHHhh
Confidence 888776
No 38
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.85 E-value=2.7e-20 Score=111.75 Aligned_cols=93 Identities=24% Similarity=0.461 Sum_probs=80.6
Q ss_pred chhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC---CeEEEEEeCCC--ChhhHhhcCCCCccEEEE
Q 045454 29 TMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP---SMICLTVDVDE--LPEFSNSWGVTATPTFFF 103 (133)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~id~d~--~~~~~~~~~v~~~P~~~~ 103 (133)
+..+|++.+ .++++++|+||++||++|+.+.|.+.++++.++ .+.++.+|++. ++.++++|+++++|++++
T Consensus 6 ~~~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~ 81 (104)
T cd02997 6 TDEDFRKFL----KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKY 81 (104)
T ss_pred chHhHHHHH----hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEE
Confidence 345777766 356799999999999999999999999988774 38889999998 999999999999999999
Q ss_pred EeCCeEEEEeeCC-CHHHHHHHH
Q 045454 104 LKDGRQIDKLIGS-NKLELQRKT 125 (133)
Q Consensus 104 ~~~g~~~~~~~g~-~~~~l~~~~ 125 (133)
+++|+.+..+.|. +.+.+.+++
T Consensus 82 ~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 82 FENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EeCCCeeEEeCCCCCHHHHHhhC
Confidence 9999999999998 888877653
No 39
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.85 E-value=2.1e-20 Score=112.58 Aligned_cols=86 Identities=23% Similarity=0.452 Sum_probs=76.0
Q ss_pred hCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC----CeEEEEEeCCCChhhHhhcCCCCccEEEEEeCCeEEEEeeCC-
Q 045454 42 KDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP----SMICLTVDVDELPEFSNSWGVTATPTFFFLKDGRQIDKLIGS- 116 (133)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~- 116 (133)
.++++++|.||++||++|+.+.|.++++++.++ ++.+..+|++..+.++++|++.++|++++|.+|. ...+.|.
T Consensus 13 ~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~-~~~~~G~~ 91 (104)
T cd03000 13 RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDL-AYNYRGPR 91 (104)
T ss_pred ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCC-ceeecCCC
Confidence 357899999999999999999999999998872 3889999999999999999999999999997664 4678888
Q ss_pred CHHHHHHHHHHH
Q 045454 117 NKLELQRKTAAV 128 (133)
Q Consensus 117 ~~~~l~~~~~~~ 128 (133)
+.++|.+++++.
T Consensus 92 ~~~~l~~~~~~~ 103 (104)
T cd03000 92 TKDDIVEFANRV 103 (104)
T ss_pred CHHHHHHHHHhh
Confidence 989999988875
No 40
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.85 E-value=4.2e-20 Score=110.76 Aligned_cols=94 Identities=22% Similarity=0.412 Sum_probs=80.9
Q ss_pred chhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC-CeEEEEEeCCCChhhHhhcCCCCccEEEEEeCC
Q 045454 29 TMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP-SMICLTVDVDELPEFSNSWGVTATPTFFFLKDG 107 (133)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~g 107 (133)
+..+|++.+. ..+++++|+||++||++|+.+.|.+.++++.++ .+.++.+|+++++.++++|+++++|++++|.+|
T Consensus 6 ~~~~~~~~i~---~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~ 82 (103)
T cd03001 6 TDSNFDKKVL---NSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAG 82 (103)
T ss_pred CHHhHHHHHh---cCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECCC
Confidence 4567777764 346679999999999999999999999998885 589999999999999999999999999999877
Q ss_pred -eEEEEeeCC-CHHHHHHHH
Q 045454 108 -RQIDKLIGS-NKLELQRKT 125 (133)
Q Consensus 108 -~~~~~~~g~-~~~~l~~~~ 125 (133)
+....+.|. +.++|.+|+
T Consensus 83 ~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 83 KNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CcceeecCCCCCHHHHHHHh
Confidence 555677788 888888775
No 41
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.85 E-value=7.9e-21 Score=114.38 Aligned_cols=85 Identities=24% Similarity=0.447 Sum_probs=75.1
Q ss_pred hhCCcEEEEEEecCCChhhhhhhHHH---HHHHhhCC-CeEEEEEeCCC----ChhhHhhcCCCCccEEEEEe--CCeEE
Q 045454 41 IKDGKIVVANFSAQWCSPCKKIAPVY---IQLADKYP-SMICLTVDVDE----LPEFSNSWGVTATPTFFFLK--DGRQI 110 (133)
Q Consensus 41 ~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~-~v~~~~id~d~----~~~~~~~~~v~~~P~~~~~~--~g~~~ 110 (133)
..++++++|+||++||++|+.+.+.+ .++++.+. ++.++.+|+++ .+.++++|++.++||+++|. +|+.+
T Consensus 8 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~~~g~~~ 87 (104)
T cd02953 8 LAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGPGGEPEP 87 (104)
T ss_pred HHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECCCCCCCC
Confidence 36789999999999999999999887 56777776 69999999987 57889999999999999996 79999
Q ss_pred EEeeCC-CHHHHHHHH
Q 045454 111 DKLIGS-NKLELQRKT 125 (133)
Q Consensus 111 ~~~~g~-~~~~l~~~~ 125 (133)
.++.|. +.++|.+++
T Consensus 88 ~~~~G~~~~~~l~~~l 103 (104)
T cd02953 88 LRLPGFLTADEFLEAL 103 (104)
T ss_pred cccccccCHHHHHHHh
Confidence 999999 988888765
No 42
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.84 E-value=8.9e-20 Score=112.66 Aligned_cols=93 Identities=23% Similarity=0.341 Sum_probs=75.0
Q ss_pred chhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCCh-----------hhHhhcC---
Q 045454 29 TMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELP-----------EFSNSWG--- 94 (133)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~-----------~~~~~~~--- 94 (133)
+.+++.+.+ .+++.++|+|+++|||+|+.+.|.|.+++++. ++.++.+|++.++ ++.++|+
T Consensus 12 t~~~~~~~i----~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~-~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~ 86 (122)
T TIGR01295 12 TVVRALEAL----DKKETATFFIGRKTCPYCRKFSGTLSGVVAQT-KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPT 86 (122)
T ss_pred CHHHHHHHH----HcCCcEEEEEECCCChhHHHHhHHHHHHHHhc-CCcEEEEECCCccCcCcccHHHHHHHHHHcCCcc
Confidence 345566555 57888999999999999999999999999884 5677888887543 4456655
Q ss_pred -CCCccEEEEEeCCeEEEEeeCC--CHHHHHHHHH
Q 045454 95 -VTATPTFFFLKDGRQIDKLIGS--NKLELQRKTA 126 (133)
Q Consensus 95 -v~~~P~~~~~~~g~~~~~~~g~--~~~~l~~~~~ 126 (133)
+.++||+++|++|+.+.+..|. +.++|.+++.
T Consensus 87 ~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 87 SFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred cCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 5569999999999999999994 7888888764
No 43
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.84 E-value=8.8e-20 Score=113.22 Aligned_cols=95 Identities=25% Similarity=0.445 Sum_probs=79.4
Q ss_pred HHhhhhhCC-cEEEEEEecCCChhhhhhhHHHH---HHHhhC-CCeEEEEEeCCCC-------------hhhHhhcCCCC
Q 045454 36 KVSESIKDG-KIVVANFSAQWCSPCKKIAPVYI---QLADKY-PSMICLTVDVDEL-------------PEFSNSWGVTA 97 (133)
Q Consensus 36 ~~~~~~~~~-~~~lv~f~~~~C~~C~~~~~~l~---~~~~~~-~~v~~~~id~d~~-------------~~~~~~~~v~~ 97 (133)
.+..+..++ ++++|+||++||++|+.+.+.+. .+.+.+ .++.++.+|.++. .++..+|++.+
T Consensus 5 ~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~ 84 (125)
T cd02951 5 DLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRF 84 (125)
T ss_pred HHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCcc
Confidence 344455678 99999999999999999999885 455555 3588899998864 67899999999
Q ss_pred ccEEEEEe-C-CeEEEEeeCC-CHHHHHHHHHHHHH
Q 045454 98 TPTFFFLK-D-GRQIDKLIGS-NKLELQRKTAAVSK 130 (133)
Q Consensus 98 ~P~~~~~~-~-g~~~~~~~g~-~~~~l~~~~~~~~~ 130 (133)
+||++++. + |+.+.++.|. +.+.+.++++.++.
T Consensus 85 ~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 85 TPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred ccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 99999994 5 6999999999 88999999988765
No 44
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.83 E-value=1.4e-19 Score=108.61 Aligned_cols=94 Identities=26% Similarity=0.472 Sum_probs=79.9
Q ss_pred echhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCC---eEEEEEeCCCChhhHhhcCCCCccEEEEE
Q 045454 28 TTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPS---MICLTVDVDELPEFSNSWGVTATPTFFFL 104 (133)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~---v~~~~id~d~~~~~~~~~~v~~~P~~~~~ 104 (133)
.+.++|++.+.. .+++++|+||++||++|+.+.|.+.++++.+++ +.++.+|++++ ++...+++.++|++++|
T Consensus 5 l~~~~f~~~i~~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~ 80 (104)
T cd02995 5 VVGKNFDEVVLD---SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFF 80 (104)
T ss_pred EchhhhHHHHhC---CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEE
Confidence 356788888753 468999999999999999999999999998754 89999999987 57888999999999999
Q ss_pred eCCe--EEEEeeCC-CHHHHHHHH
Q 045454 105 KDGR--QIDKLIGS-NKLELQRKT 125 (133)
Q Consensus 105 ~~g~--~~~~~~g~-~~~~l~~~~ 125 (133)
++|+ ...++.|. +..+|.+||
T Consensus 81 ~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 81 PAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred cCCCcCCceEccCCcCHHHHHhhC
Confidence 8877 56678888 888887764
No 45
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.82 E-value=3.6e-19 Score=117.63 Aligned_cols=102 Identities=17% Similarity=0.253 Sum_probs=85.0
Q ss_pred cCcCeEEeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCcc
Q 045454 20 ASKNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATP 99 (133)
Q Consensus 20 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~P 99 (133)
..+.+..++ ..+|...+..+ ..+.++||+||++||++|+.+.|.|.+++.+|+.+.|+.+|++.. ..+|++..+|
T Consensus 80 ~~G~v~eis-~~~f~~eV~~a-s~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---~~~~~i~~lP 154 (192)
T cd02988 80 KFGEVYEIS-KPDYVREVTEA-SKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---IPNYPDKNLP 154 (192)
T ss_pred CCCeEEEeC-HHHHHHHHHhc-CCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HhhCCCCCCC
Confidence 467777884 57788776543 235699999999999999999999999999999999999999864 6899999999
Q ss_pred EEEEEeCCeEEEEeeCC--------CHHHHHHHHH
Q 045454 100 TFFFLKDGRQIDKLIGS--------NKLELQRKTA 126 (133)
Q Consensus 100 ~~~~~~~g~~~~~~~g~--------~~~~l~~~~~ 126 (133)
|+++|++|+.+.++.|. +..+|+.++.
T Consensus 155 Tlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~ 189 (192)
T cd02988 155 TILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLV 189 (192)
T ss_pred EEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHH
Confidence 99999999999999874 4455555554
No 46
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.82 E-value=4.7e-19 Score=103.42 Aligned_cols=84 Identities=46% Similarity=0.910 Sum_probs=77.3
Q ss_pred hCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCccEEEEEeCCeEEEEeeCC-CHHH
Q 045454 42 KDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFLKDGRQIDKLIGS-NKLE 120 (133)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~ 120 (133)
.++++++|+||++||++|+.+.+.+.++.+..+++.++.+|++.++++++.|++.++|+++++.+|+.+..+.|. +.++
T Consensus 8 ~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~ 87 (93)
T cd02947 8 KSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRVVGADPKEE 87 (93)
T ss_pred hcCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEEecCCCHHH
Confidence 355999999999999999999999999998877899999999999999999999999999999999999999998 7688
Q ss_pred HHHHH
Q 045454 121 LQRKT 125 (133)
Q Consensus 121 l~~~~ 125 (133)
|.+++
T Consensus 88 l~~~i 92 (93)
T cd02947 88 LEEFL 92 (93)
T ss_pred HHHHh
Confidence 87765
No 47
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.82 E-value=3e-19 Score=108.42 Aligned_cols=96 Identities=21% Similarity=0.335 Sum_probs=77.5
Q ss_pred chhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC--CeEEEEEeCCC-ChhhHh-hcCCCCccEEEEE
Q 045454 29 TMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP--SMICLTVDVDE-LPEFSN-SWGVTATPTFFFL 104 (133)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~id~d~-~~~~~~-~~~v~~~P~~~~~ 104 (133)
+.++|+..+... .++++++|.||++||++|+++.|.+.++++.++ ++.+..+|++. +..+++ .|+++++||+++|
T Consensus 7 ~~~~~~~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f 85 (109)
T cd02993 7 SRAEIEALAKGE-RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILFF 85 (109)
T ss_pred cHHHHHHHHhhh-hcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEEE
Confidence 456888776532 467899999999999999999999999998885 48999999997 567776 5999999999999
Q ss_pred eC-CeEEEEeeCC--CHHHHHHHH
Q 045454 105 KD-GRQIDKLIGS--NKLELQRKT 125 (133)
Q Consensus 105 ~~-g~~~~~~~g~--~~~~l~~~~ 125 (133)
.+ ++....+.|. +.+.|..||
T Consensus 86 ~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 86 PKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred cCCCCCceeccCCCCCHHHHHhhC
Confidence 55 4566678873 777777653
No 48
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.82 E-value=1.9e-19 Score=106.85 Aligned_cols=92 Identities=29% Similarity=0.500 Sum_probs=79.4
Q ss_pred chhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhC---CCeEEEEEeCCCChhhHhhcCCCCccEEEEEe
Q 045454 29 TMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKY---PSMICLTVDVDELPEFSNSWGVTATPTFFFLK 105 (133)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~---~~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~ 105 (133)
+.++|.+.+ .++++++|+||++||++|+.+.+.+.++++.+ .++.++.+|++.++.++++|+++++|+++++.
T Consensus 4 ~~~~~~~~i----~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~ 79 (101)
T cd02961 4 TDDNFDELV----KDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFP 79 (101)
T ss_pred cHHHHHHHH----hCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEc
Confidence 345666666 45669999999999999999999999999888 45999999999999999999999999999997
Q ss_pred CC-eEEEEeeCC-CHHHHHHH
Q 045454 106 DG-RQIDKLIGS-NKLELQRK 124 (133)
Q Consensus 106 ~g-~~~~~~~g~-~~~~l~~~ 124 (133)
+| +.+.++.|. +.+++.++
T Consensus 80 ~~~~~~~~~~g~~~~~~i~~~ 100 (101)
T cd02961 80 NGSKEPVKYEGPRTLESLVEF 100 (101)
T ss_pred CCCcccccCCCCcCHHHHHhh
Confidence 66 788888888 77777765
No 49
>PTZ00062 glutaredoxin; Provisional
Probab=99.81 E-value=3.8e-19 Score=118.07 Aligned_cols=91 Identities=14% Similarity=0.160 Sum_probs=80.2
Q ss_pred chhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCccEEEEEeCCe
Q 045454 29 TMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFLKDGR 108 (133)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~g~ 108 (133)
+.+++.+.+. .+.+.++++|||+||++|+.+.|.+.+++++++++.|+.||++ |+|.++|++++|++|+
T Consensus 5 ~~ee~~~~i~---~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V~~vPtfv~~~~g~ 73 (204)
T PTZ00062 5 KKEEKDKLIE---SNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DANNEYGVFEFYQNSQ 73 (204)
T ss_pred CHHHHHHHHh---cCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCcccceEEEEEECCE
Confidence 4456666653 1347889999999999999999999999999999999999988 9999999999999999
Q ss_pred EEEEeeCCCHHHHHHHHHHHHH
Q 045454 109 QIDKLIGSNKLELQRKTAAVSK 130 (133)
Q Consensus 109 ~~~~~~g~~~~~l~~~~~~~~~ 130 (133)
.+.++.|.+..++...+.++.+
T Consensus 74 ~i~r~~G~~~~~~~~~~~~~~~ 95 (204)
T PTZ00062 74 LINSLEGCNTSTLVSFIRGWAQ 95 (204)
T ss_pred EEeeeeCCCHHHHHHHHHHHcC
Confidence 9999999999999998887643
No 50
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.81 E-value=3.8e-19 Score=106.79 Aligned_cols=94 Identities=31% Similarity=0.562 Sum_probs=79.7
Q ss_pred chhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC---CeEEEEEeCCC-ChhhHhhcCCCCccEEEEE
Q 045454 29 TMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP---SMICLTVDVDE-LPEFSNSWGVTATPTFFFL 104 (133)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~id~d~-~~~~~~~~~v~~~P~~~~~ 104 (133)
+.++|++.+. ..+++++|+||++||++|+.+.|.+..+++.++ ++.++.+|++. ++.++++|++.++|++++|
T Consensus 6 ~~~~~~~~~~---~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~ 82 (105)
T cd02998 6 TDSNFDKVVG---DDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFF 82 (105)
T ss_pred chhcHHHHhc---CCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEE
Confidence 4467777653 245699999999999999999999999998875 48999999999 9999999999999999999
Q ss_pred eCC-eEEEEeeCC-CHHHHHHHH
Q 045454 105 KDG-RQIDKLIGS-NKLELQRKT 125 (133)
Q Consensus 105 ~~g-~~~~~~~g~-~~~~l~~~~ 125 (133)
.+| +....+.|. +.++|.+|+
T Consensus 83 ~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 83 PKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred eCCCCCccccCCccCHHHHHhhC
Confidence 655 667778887 888887764
No 51
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.9e-18 Score=126.33 Aligned_cols=105 Identities=22% Similarity=0.418 Sum_probs=92.3
Q ss_pred CcCeEEeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC----CeEEEEEeCCCChhhHhhcCCC
Q 045454 21 SKNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP----SMICLTVDVDELPEFSNSWGVT 96 (133)
Q Consensus 21 ~~~~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~id~d~~~~~~~~~~v~ 96 (133)
....+...+.++|+..+ ..+..++|.||||||++|+++.|.+.+.+..+. .+.++.||++++.+++.+|+|+
T Consensus 23 ~~~~Vl~Lt~dnf~~~i----~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~ 98 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKETI----NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVR 98 (493)
T ss_pred cccceEEEecccHHHHh----ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCC
Confidence 34455566778999988 578999999999999999999999999888763 5899999999999999999999
Q ss_pred CccEEEEEeCCeEEEEeeCC-CHHHHHHHHHHHH
Q 045454 97 ATPTFFFLKDGRQIDKLIGS-NKLELQRKTAAVS 129 (133)
Q Consensus 97 ~~P~~~~~~~g~~~~~~~g~-~~~~l~~~~~~~~ 129 (133)
++||+.+|++|+....+.|+ ..+.+..||.+-.
T Consensus 99 gyPTlkiFrnG~~~~~Y~G~r~adgIv~wl~kq~ 132 (493)
T KOG0190|consen 99 GYPTLKIFRNGRSAQDYNGPREADGIVKWLKKQS 132 (493)
T ss_pred CCCeEEEEecCCcceeccCcccHHHHHHHHHhcc
Confidence 99999999999987788898 9999999988643
No 52
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.77 E-value=1.3e-18 Score=106.82 Aligned_cols=102 Identities=19% Similarity=0.358 Sum_probs=78.6
Q ss_pred hHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhC-CCeEEEEEeCCCCh-hhHhhcCCCC--ccEEEEE-eC
Q 045454 32 SWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKY-PSMICLTVDVDELP-EFSNSWGVTA--TPTFFFL-KD 106 (133)
Q Consensus 32 ~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~-~~v~~~~id~d~~~-~~~~~~~v~~--~P~~~~~-~~ 106 (133)
++++.+..+..++++++|.|||+||++|+.+.|.+.+..... .+..|+.++++..+ ...+.|++.+ +||++++ ++
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~ 86 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPS 86 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCC
Confidence 577778877788999999999999999999999998876643 23456666766554 3457888876 9999999 69
Q ss_pred CeEEEE---eeCC-CHHHHHHHHHHHHHhhC
Q 045454 107 GRQIDK---LIGS-NKLELQRKTAAVSKLLR 133 (133)
Q Consensus 107 g~~~~~---~~g~-~~~~l~~~~~~~~~~~~ 133 (133)
|+.+.+ ..|. +...+.+.++.+.+.++
T Consensus 87 Gk~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 117 (117)
T cd02959 87 GDVHPEIINKKGNPNYKYFYSSAAQVTESMK 117 (117)
T ss_pred CCCchhhccCCCCccccccCCCHHHHHhhcC
Confidence 999874 4455 66777777777776653
No 53
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.77 E-value=3.7e-18 Score=104.36 Aligned_cols=84 Identities=23% Similarity=0.404 Sum_probs=69.5
Q ss_pred chhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC----CeEEEEEeCC--CChhhHhhcCCCCccEEE
Q 045454 29 TMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP----SMICLTVDVD--ELPEFSNSWGVTATPTFF 102 (133)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~id~d--~~~~~~~~~~v~~~P~~~ 102 (133)
+.++|++.+.. .+++++|.||++||++|+.+.|.++++++.++ .+.+..+|++ .++.++++|+++++|+++
T Consensus 7 ~~~~f~~~i~~---~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~ 83 (114)
T cd02992 7 DAASFNSALLG---SPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLR 83 (114)
T ss_pred CHHhHHHHHhc---CCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEE
Confidence 56788888864 35899999999999999999999999988763 2888889975 577899999999999999
Q ss_pred EEeCCeEEEEeeCC
Q 045454 103 FLKDGRQIDKLIGS 116 (133)
Q Consensus 103 ~~~~g~~~~~~~g~ 116 (133)
+|++|+ .....|.
T Consensus 84 lf~~~~-~~~~~~~ 96 (114)
T cd02992 84 YFPPFS-KEATDGL 96 (114)
T ss_pred EECCCC-ccCCCCC
Confidence 998877 3344444
No 54
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.76 E-value=1.4e-17 Score=101.93 Aligned_cols=96 Identities=18% Similarity=0.275 Sum_probs=74.8
Q ss_pred eechhhHHHHHhhhhhCCcEEEEEEec-------CCChhhhhhhHHHHHHHhhCC-CeEEEEEeCCC-------ChhhHh
Q 045454 27 ITTMVSWEAKVSESIKDGKIVVANFSA-------QWCSPCKKIAPVYIQLADKYP-SMICLTVDVDE-------LPEFSN 91 (133)
Q Consensus 27 i~~~~~~~~~~~~~~~~~~~~lv~f~~-------~~C~~C~~~~~~l~~~~~~~~-~v~~~~id~d~-------~~~~~~ 91 (133)
+.+.++|.+.+.. .++++++|.||| +||++|+.+.|.+++++.+++ ++.|+.||+++ +.++..
T Consensus 6 ~~~~~~f~~~i~~--~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~ 83 (119)
T cd02952 6 VRGYEEFLKLLKS--HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRT 83 (119)
T ss_pred ccCHHHHHHHHHh--cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHh
Confidence 4566777777754 257899999999 999999999999999999998 69999999976 458899
Q ss_pred hcCCC-CccEEEEEeCCeEEEEeeCCCHHHHHHH
Q 045454 92 SWGVT-ATPTFFFLKDGRQIDKLIGSNKLELQRK 124 (133)
Q Consensus 92 ~~~v~-~~P~~~~~~~g~~~~~~~g~~~~~l~~~ 124 (133)
+|++. ++||+++++.|+.+....-.+...+..+
T Consensus 84 ~~~I~~~iPT~~~~~~~~~l~~~~c~~~~~~~~~ 117 (119)
T cd02952 84 DPKLTTGVPTLLRWKTPQRLVEDECLQADLVEMF 117 (119)
T ss_pred ccCcccCCCEEEEEcCCceecchhhcCHHHHHHh
Confidence 99998 9999999977754322111155555444
No 55
>PTZ00102 disulphide isomerase; Provisional
Probab=99.76 E-value=1.4e-17 Score=123.59 Aligned_cols=106 Identities=25% Similarity=0.399 Sum_probs=89.1
Q ss_pred CcCeEEeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC---CeEEEEEeCCCChhhHhhcCCCC
Q 045454 21 SKNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP---SMICLTVDVDELPEFSNSWGVTA 97 (133)
Q Consensus 21 ~~~~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~id~d~~~~~~~~~~v~~ 97 (133)
.+.+..+ +.++|++.+. ..+++++|+|||+||++|+.+.|.++++++.++ .+.++.+|++.+...+++|++++
T Consensus 356 ~~~v~~l-~~~~f~~~v~---~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~ 431 (477)
T PTZ00102 356 DGPVKVV-VGNTFEEIVF---KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSA 431 (477)
T ss_pred CCCeEEe-cccchHHHHh---cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcc
Confidence 3344444 5688888764 468999999999999999999999999998874 38899999999999999999999
Q ss_pred ccEEEEEeCCeEE-EEeeCC-CHHHHHHHHHHHHH
Q 045454 98 TPTFFFLKDGRQI-DKLIGS-NKLELQRKTAAVSK 130 (133)
Q Consensus 98 ~P~~~~~~~g~~~-~~~~g~-~~~~l~~~~~~~~~ 130 (133)
+||+++|++|+.+ ..+.|. +.+.+.++++++..
T Consensus 432 ~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 432 FPTILFVKAGERTPIPYEGERTVEGFKEFVNKHAT 466 (477)
T ss_pred cCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCC
Confidence 9999999766544 578898 99999999988753
No 56
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.76 E-value=2.3e-17 Score=120.97 Aligned_cols=106 Identities=17% Similarity=0.245 Sum_probs=83.5
Q ss_pred cCeEEeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC--CeEEEEEeCCCCh-hhH-hhcCCCC
Q 045454 22 KNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP--SMICLTVDVDELP-EFS-NSWGVTA 97 (133)
Q Consensus 22 ~~~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~id~d~~~-~~~-~~~~v~~ 97 (133)
+..+...+.++|+..+... ..+++++|.|||+||++|+.+.|.+++++++++ ++.|+.+|+|.+. .++ ++|+|.+
T Consensus 350 ~~~Vv~L~~~nf~~~v~~~-~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~ 428 (463)
T TIGR00424 350 SNNVVSLSRPGIENLLKLE-ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS 428 (463)
T ss_pred CCCeEECCHHHHHHHHhhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCc
Confidence 3334445667899988532 478999999999999999999999999999985 3889999999764 344 6899999
Q ss_pred ccEEEEEeCCe-EEEEee-CC-CHHHHHHHHHHH
Q 045454 98 TPTFFFLKDGR-QIDKLI-GS-NKLELQRKTAAV 128 (133)
Q Consensus 98 ~P~~~~~~~g~-~~~~~~-g~-~~~~l~~~~~~~ 128 (133)
+||+++|++|. ....+. |. +.+.|..|++.+
T Consensus 429 ~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 429 FPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred cceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 99999998775 223454 45 889998888754
No 57
>PLN02309 5'-adenylylsulfate reductase
Probab=99.75 E-value=3.2e-17 Score=120.14 Aligned_cols=102 Identities=16% Similarity=0.258 Sum_probs=83.7
Q ss_pred EeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC--CeEEEEEeCC-CChhhHh-hcCCCCccEE
Q 045454 26 LITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP--SMICLTVDVD-ELPEFSN-SWGVTATPTF 101 (133)
Q Consensus 26 ~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~id~d-~~~~~~~-~~~v~~~P~~ 101 (133)
...+.++|++.+... ..+++++|+||++||++|+.+.|.+.++++.+. ++.|+.+|++ .+..++. +|+|.++||+
T Consensus 348 v~Lt~~nfe~ll~~~-~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTi 426 (457)
T PLN02309 348 VALSRAGIENLLKLE-NRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTI 426 (457)
T ss_pred EECCHHHHHHHHHhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeEE
Confidence 334667888877543 578999999999999999999999999999885 4999999999 7788886 6999999999
Q ss_pred EEEeCCe-EEEEeeC-C-CHHHHHHHHHHH
Q 045454 102 FFLKDGR-QIDKLIG-S-NKLELQRKTAAV 128 (133)
Q Consensus 102 ~~~~~g~-~~~~~~g-~-~~~~l~~~~~~~ 128 (133)
++|++|. ....+.| . +.+.|..|++.+
T Consensus 427 l~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 427 LLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred EEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 9997664 3334553 4 889999998865
No 58
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.75 E-value=1.5e-17 Score=122.67 Aligned_cols=99 Identities=24% Similarity=0.482 Sum_probs=86.9
Q ss_pred echhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC----CeEEEEEeCCCChhhHhhcCCCCccEEEE
Q 045454 28 TTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP----SMICLTVDVDELPEFSNSWGVTATPTFFF 103 (133)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~id~d~~~~~~~~~~v~~~P~~~~ 103 (133)
.+.++|++.+ .++++++|.|||+||++|+.+.|.+.++++.+. ++.++.+|++++++++++|++.++||+++
T Consensus 6 l~~~~~~~~i----~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 81 (462)
T TIGR01130 6 LTKDNFDDFI----KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKI 81 (462)
T ss_pred CCHHHHHHHH----hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEE
Confidence 3557788776 467899999999999999999999999887653 39999999999999999999999999999
Q ss_pred EeCCeE-EEEeeCC-CHHHHHHHHHHHHH
Q 045454 104 LKDGRQ-IDKLIGS-NKLELQRKTAAVSK 130 (133)
Q Consensus 104 ~~~g~~-~~~~~g~-~~~~l~~~~~~~~~ 130 (133)
|++|+. +..+.|. +...|.+++.+...
T Consensus 82 ~~~g~~~~~~~~g~~~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 82 FRNGEDSVSDYNGPRDADGIVKYMKKQSG 110 (462)
T ss_pred EeCCccceeEecCCCCHHHHHHHHHHhcC
Confidence 999987 7788898 99999999987753
No 59
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.75 E-value=2.5e-17 Score=94.83 Aligned_cols=78 Identities=22% Similarity=0.365 Sum_probs=69.1
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHhhCC-CeEEEEEeCCCChhhHhhcCCCCccEEEEEeCCeEEEEeeCC-CHHHHHHH
Q 045454 47 VVANFSAQWCSPCKKIAPVYIQLADKYP-SMICLTVDVDELPEFSNSWGVTATPTFFFLKDGRQIDKLIGS-NKLELQRK 124 (133)
Q Consensus 47 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~ 124 (133)
.+..||++||++|+.+.+.++++++.++ .+.+..+|.++++++.++|+++++|++++ +|+. ++.|. +.+++.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~~--~~~G~~~~~~l~~~ 77 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGDV--EFIGAPTKEELVEA 77 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCEE--EEecCCCHHHHHHH
Confidence 4678999999999999999999998885 48999999999999999999999999986 7763 67788 89999888
Q ss_pred HHHH
Q 045454 125 TAAV 128 (133)
Q Consensus 125 ~~~~ 128 (133)
+++.
T Consensus 78 l~~~ 81 (82)
T TIGR00411 78 IKKR 81 (82)
T ss_pred HHhh
Confidence 8765
No 60
>PTZ00102 disulphide isomerase; Provisional
Probab=99.75 E-value=2.5e-17 Score=122.18 Aligned_cols=99 Identities=24% Similarity=0.502 Sum_probs=86.5
Q ss_pred eechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhC----CCeEEEEEeCCCChhhHhhcCCCCccEEE
Q 045454 27 ITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKY----PSMICLTVDVDELPEFSNSWGVTATPTFF 102 (133)
Q Consensus 27 i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~----~~v~~~~id~d~~~~~~~~~~v~~~P~~~ 102 (133)
..+..+|+..+ .+++.++|.||++||++|+++.|.+.++++.+ .++.++.+|++++..++++|++.++||++
T Consensus 36 ~l~~~~f~~~i----~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~ 111 (477)
T PTZ00102 36 VLTDSTFDKFI----TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIK 111 (477)
T ss_pred EcchhhHHHHH----hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEE
Confidence 33557788776 45789999999999999999999999887655 35999999999999999999999999999
Q ss_pred EEeCCeEEEEeeCC-CHHHHHHHHHHHHH
Q 045454 103 FLKDGRQIDKLIGS-NKLELQRKTAAVSK 130 (133)
Q Consensus 103 ~~~~g~~~~~~~g~-~~~~l~~~~~~~~~ 130 (133)
+|++|+.+ .+.|. +...|.+++++...
T Consensus 112 ~~~~g~~~-~y~g~~~~~~l~~~l~~~~~ 139 (477)
T PTZ00102 112 FFNKGNPV-NYSGGRTADGIVSWIKKLTG 139 (477)
T ss_pred EEECCceE-EecCCCCHHHHHHHHHHhhC
Confidence 99998877 88888 99999999998754
No 61
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.74 E-value=2.9e-17 Score=124.05 Aligned_cols=109 Identities=21% Similarity=0.411 Sum_probs=92.8
Q ss_pred CcCeEEeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHH---HHHHhhCCCeEEEEEeCCCC----hhhHhhc
Q 045454 21 SKNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVY---IQLADKYPSMICLTVDVDEL----PEFSNSW 93 (133)
Q Consensus 21 ~~~~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~v~~~~id~d~~----~~~~~~~ 93 (133)
+.....+.+.+++++.+.++..++|+++|+|||+||++|+.+.+.. .++.+.++++.++.+|.+++ .++.++|
T Consensus 451 ~~~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~ 530 (571)
T PRK00293 451 HLNFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHY 530 (571)
T ss_pred CCCceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHc
Confidence 3456778889999999987767789999999999999999998875 56777778899999999853 5789999
Q ss_pred CCCCccEEEEE-eCCeEE--EEeeCC-CHHHHHHHHHHHH
Q 045454 94 GVTATPTFFFL-KDGRQI--DKLIGS-NKLELQRKTAAVS 129 (133)
Q Consensus 94 ~v~~~P~~~~~-~~g~~~--~~~~g~-~~~~l~~~~~~~~ 129 (133)
++.++|++++| ++|+.+ .++.|. +.+++.++++++.
T Consensus 531 ~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 531 NVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred CCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 99999999999 588874 688898 9999999888753
No 62
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.73 E-value=4.8e-17 Score=103.92 Aligned_cols=86 Identities=20% Similarity=0.426 Sum_probs=66.9
Q ss_pred hCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCC------------hhhH-hhc---CCCCccEEEEE-
Q 045454 42 KDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDEL------------PEFS-NSW---GVTATPTFFFL- 104 (133)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~------------~~~~-~~~---~v~~~P~~~~~- 104 (133)
..++..+|+||++||++|++..|.++++++++ ++.++.++.|.. .... ..| ++.++|+++++
T Consensus 48 ~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID 126 (153)
T TIGR02738 48 NQDDYALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVN 126 (153)
T ss_pred hcCCCEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEe
Confidence 45667799999999999999999999999998 566666666542 2222 345 78999999988
Q ss_pred eCCeE-EEEeeCC-CHHHHHHHHHHH
Q 045454 105 KDGRQ-IDKLIGS-NKLELQRKTAAV 128 (133)
Q Consensus 105 ~~g~~-~~~~~g~-~~~~l~~~~~~~ 128 (133)
++|+. .....|. +.+++++.++++
T Consensus 127 ~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 127 VNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred CCCCEEEEEeecccCHHHHHHHHHHh
Confidence 66665 5578898 888888888765
No 63
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.72 E-value=1.9e-16 Score=106.66 Aligned_cols=88 Identities=19% Similarity=0.372 Sum_probs=75.9
Q ss_pred CCcEEEEEEec---CCChhhhhhhHHHHHHHhhCCCe--EEEEEeCCCChhhHhhcCCCCccEEEEEeCCeEEE-EeeCC
Q 045454 43 DGKIVVANFSA---QWCSPCKKIAPVYIQLADKYPSM--ICLTVDVDELPEFSNSWGVTATPTFFFLKDGRQID-KLIGS 116 (133)
Q Consensus 43 ~~~~~lv~f~~---~~C~~C~~~~~~l~~~~~~~~~v--~~~~id~d~~~~~~~~~~v~~~P~~~~~~~g~~~~-~~~g~ 116 (133)
++...++.|++ +||++|+.+.|.++++++.++++ .++.+|.+++++++++|+|.++||+++|++|+.+. ++.|.
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~ 97 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGI 97 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeec
Confidence 45566777888 99999999999999999999764 46666666999999999999999999999999984 88998
Q ss_pred -CHHHHHHHHHHHHH
Q 045454 117 -NKLELQRKTAAVSK 130 (133)
Q Consensus 117 -~~~~l~~~~~~~~~ 130 (133)
+..++.++++.+++
T Consensus 98 ~~~~~l~~~i~~~~~ 112 (215)
T TIGR02187 98 PAGYEFAALIEDIVR 112 (215)
T ss_pred CCHHHHHHHHHHHHH
Confidence 88899999988754
No 64
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.70 E-value=2e-16 Score=96.23 Aligned_cols=95 Identities=14% Similarity=0.194 Sum_probs=74.3
Q ss_pred eechhhHHHHHhhhhhCCcEEEEEEec--CCCh---hhhhhhHHHHHHHhhCCCeEEEEEeCC-----CChhhHhhcCCC
Q 045454 27 ITTMVSWEAKVSESIKDGKIVVANFSA--QWCS---PCKKIAPVYIQLADKYPSMICLTVDVD-----ELPEFSNSWGVT 96 (133)
Q Consensus 27 i~~~~~~~~~~~~~~~~~~~~lv~f~~--~~C~---~C~~~~~~l~~~~~~~~~v~~~~id~d-----~~~~~~~~~~v~ 96 (133)
..+.++|++.+ .+++.+||.||| |||+ +|+.+.|.+...+. .+.+..||++ ++.+++++|+|.
T Consensus 5 ~L~~~nF~~~v----~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~---~v~lakVd~~d~~~~~~~~L~~~y~I~ 77 (116)
T cd03007 5 DLDTVTFYKVI----PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD---DLLVAEVGIKDYGEKLNMELGERYKLD 77 (116)
T ss_pred ECChhhHHHHH----hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC---ceEEEEEecccccchhhHHHHHHhCCC
Confidence 34668899988 468899999999 8888 66666666655442 3889999994 678899999999
Q ss_pred --CccEEEEEeCCe--EEEEeeC--CCHHHHHHHHHHH
Q 045454 97 --ATPTFFFLKDGR--QIDKLIG--SNKLELQRKTAAV 128 (133)
Q Consensus 97 --~~P~~~~~~~g~--~~~~~~g--~~~~~l~~~~~~~ 128 (133)
++||+.+|++|. ....+.| .+.+.|.++|.+.
T Consensus 78 ~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 78 KESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred cCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999999999885 3345667 3888888888753
No 65
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.70 E-value=1.2e-16 Score=95.72 Aligned_cols=85 Identities=15% Similarity=0.251 Sum_probs=76.6
Q ss_pred CcEEEEEEecCCChhhhhhhHHHHHHHhhCCC-eEEEEEeCCCChhhHhhcCCC--CccEEEEEeC--CeEEEEeeCC-C
Q 045454 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKYPS-MICLTVDVDELPEFSNSWGVT--ATPTFFFLKD--GRQIDKLIGS-N 117 (133)
Q Consensus 44 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~id~d~~~~~~~~~~v~--~~P~~~~~~~--g~~~~~~~g~-~ 117 (133)
++++++.|+++||++|+.+.+.+.++++++.+ +.|+.+|+++++.+++.|++. ++|+++++++ |+......|. +
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~ 91 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT 91 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence 68999999999999999999999999999965 999999999999999999999 9999999977 6666555566 8
Q ss_pred HHHHHHHHHHH
Q 045454 118 KLELQRKTAAV 128 (133)
Q Consensus 118 ~~~l~~~~~~~ 128 (133)
.+.|.+|++++
T Consensus 92 ~~~l~~fi~~~ 102 (103)
T cd02982 92 AESLEEFVEDF 102 (103)
T ss_pred HHHHHHHHHhh
Confidence 89999998875
No 66
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.69 E-value=7.4e-16 Score=101.64 Aligned_cols=87 Identities=20% Similarity=0.329 Sum_probs=72.6
Q ss_pred CCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCCh-----------------------hhHhhcCCCCcc
Q 045454 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELP-----------------------EFSNSWGVTATP 99 (133)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~-----------------------~~~~~~~v~~~P 99 (133)
.+++++|+||++||++|++..|.+.++.+. ++.++.++.++.+ .+.+.|++.++|
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P 144 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP 144 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCC
Confidence 689999999999999999999999998653 6777788765432 245578999999
Q ss_pred EEEEE-eCCeEEEEeeCC-CHHHHHHHHHHHHHh
Q 045454 100 TFFFL-KDGRQIDKLIGS-NKLELQRKTAAVSKL 131 (133)
Q Consensus 100 ~~~~~-~~g~~~~~~~g~-~~~~l~~~~~~~~~~ 131 (133)
+.+++ ++|+++..+.|. +.+++++.++.+++.
T Consensus 145 ~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~ 178 (185)
T PRK15412 145 ETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEK 178 (185)
T ss_pred eEEEECCCceEEEEEecCCCHHHHHHHHHHHHHH
Confidence 77777 899999999999 999999999888764
No 67
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.69 E-value=4.9e-16 Score=115.35 Aligned_cols=87 Identities=22% Similarity=0.285 Sum_probs=74.5
Q ss_pred hCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC--CeEEEEEe----------------------------CCCChhhHh
Q 045454 42 KDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP--SMICLTVD----------------------------VDELPEFSN 91 (133)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~id----------------------------~d~~~~~~~ 91 (133)
.++++++|+|||+||++|+...|.|++++++++ ++.++.|. .|.+..+.+
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak 133 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQ 133 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHH
Confidence 378999999999999999999999999999885 56665543 345667889
Q ss_pred hcCCCCccEEEEE-eCCeEEEEeeCC-CHHHHHHHHHHH
Q 045454 92 SWGVTATPTFFFL-KDGRQIDKLIGS-NKLELQRKTAAV 128 (133)
Q Consensus 92 ~~~v~~~P~~~~~-~~g~~~~~~~g~-~~~~l~~~~~~~ 128 (133)
.|++.++|+++++ ++|+++..+.|. +.++|.++++..
T Consensus 134 ~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 134 SLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNP 172 (521)
T ss_pred HcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 9999999999776 899999999999 999999988843
No 68
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.6e-16 Score=116.39 Aligned_cols=110 Identities=25% Similarity=0.432 Sum_probs=86.6
Q ss_pred ccccccccC-cCeEEeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC---CeEEEEEeCCCChh
Q 045454 13 CRDHVEFAS-KNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP---SMICLTVDVDELPE 88 (133)
Q Consensus 13 ~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~id~d~~~~ 88 (133)
|++...... +++..+ -.++|++.+. .+++-++|.||||||+||+++.|.+++|++.|+ ++.+..+|++.|.
T Consensus 356 SqpiPe~~~~~pVkvv-Vgknfd~iv~---de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd- 430 (493)
T KOG0190|consen 356 SQPIPEDNDRSPVKVV-VGKNFDDIVL---DEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND- 430 (493)
T ss_pred cCCCCcccccCCeEEE-eecCHHHHhh---ccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc-
Confidence 444444444 445544 5588998875 578999999999999999999999999999985 4899999999887
Q ss_pred hHhhcCCCCccEEEEEeCCe--EEEEeeCC-CHHHHHHHHHHH
Q 045454 89 FSNSWGVTATPTFFFLKDGR--QIDKLIGS-NKLELQRKTAAV 128 (133)
Q Consensus 89 ~~~~~~v~~~P~~~~~~~g~--~~~~~~g~-~~~~l~~~~~~~ 128 (133)
.....+.++||+++++.|. .+-.+.|. +.+++..++++.
T Consensus 431 -~~~~~~~~fPTI~~~pag~k~~pv~y~g~R~le~~~~fi~~~ 472 (493)
T KOG0190|consen 431 -VPSLKVDGFPTILFFPAGHKSNPVIYNGDRTLEDLKKFIKKS 472 (493)
T ss_pred -CccccccccceEEEecCCCCCCCcccCCCcchHHHHhhhccC
Confidence 5666778899999997665 34456677 889998888754
No 69
>PHA02125 thioredoxin-like protein
Probab=99.67 E-value=1e-15 Score=86.84 Aligned_cols=69 Identities=29% Similarity=0.600 Sum_probs=58.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCccEEEEEeCCeEEEEeeCC--CHHHHHHH
Q 045454 48 VANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFLKDGRQIDKLIGS--NKLELQRK 124 (133)
Q Consensus 48 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~--~~~~l~~~ 124 (133)
+++||++||++|+.+.|.|.++. +.++.+|.++++++.++|++.++||++ +|+.+.++.|. +..+|.+.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~~ 72 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKEK 72 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHHH
Confidence 68999999999999999997653 457889999999999999999999987 68888889897 33555543
No 70
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.67 E-value=3.5e-16 Score=95.13 Aligned_cols=84 Identities=31% Similarity=0.580 Sum_probs=65.4
Q ss_pred hCCcEEEEEEecCCChhhhhhhHHHHHH---HhhCC-CeEEEEEeCCCC--------------------hhhHhhcCCCC
Q 045454 42 KDGKIVVANFSAQWCSPCKKIAPVYIQL---ADKYP-SMICLTVDVDEL--------------------PEFSNSWGVTA 97 (133)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~---~~~~~-~v~~~~id~d~~--------------------~~~~~~~~v~~ 97 (133)
.++++++++||++||++|+.+.+.+... ...+. ++.++.++++.. .++.++|++.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 4789999999999999999999999854 44443 577888887643 35889999999
Q ss_pred ccEEEEE-eCCeEEEEeeCC-CHHHHHHHH
Q 045454 98 TPTFFFL-KDGRQIDKLIGS-NKLELQRKT 125 (133)
Q Consensus 98 ~P~~~~~-~~g~~~~~~~g~-~~~~l~~~~ 125 (133)
+||++++ .+|+.+.++.|. +.++|.+++
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 9999999 689999999999 988888764
No 71
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.67 E-value=1e-15 Score=103.17 Aligned_cols=82 Identities=15% Similarity=0.310 Sum_probs=72.1
Q ss_pred CCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCccEEEEEeCCeEEEEeeCC-CHHHH
Q 045454 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFLKDGRQIDKLIGS-NKLEL 121 (133)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l 121 (133)
++.+.++.||++||++|+.+.+.+++++..++++.+..+|.+.+++++++|+|.++||++++.+|+. +.|. +.+++
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~---~~G~~~~~~l 208 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE---FVGAYPEEQF 208 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE---EECCCCHHHH
Confidence 4455666699999999999999999999888889999999999999999999999999999987753 7788 88888
Q ss_pred HHHHHH
Q 045454 122 QRKTAA 127 (133)
Q Consensus 122 ~~~~~~ 127 (133)
.+++.+
T Consensus 209 ~~~l~~ 214 (215)
T TIGR02187 209 LEYILS 214 (215)
T ss_pred HHHHHh
Confidence 888764
No 72
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.67 E-value=1.7e-15 Score=98.87 Aligned_cols=87 Identities=25% Similarity=0.417 Sum_probs=71.6
Q ss_pred hCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeC-----------------------CCChhhHhhcCCCCc
Q 045454 42 KDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDV-----------------------DELPEFSNSWGVTAT 98 (133)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~-----------------------d~~~~~~~~~~v~~~ 98 (133)
..+++++|+||++||++|+...|.++++.+. ++.++.++. |.+..+.++|++.++
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~ 138 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGA 138 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeC
Confidence 3689999999999999999999999988764 455555554 334456778899999
Q ss_pred cEEEEE-eCCeEEEEeeCC-CHHHHHHHHHHHHH
Q 045454 99 PTFFFL-KDGRQIDKLIGS-NKLELQRKTAAVSK 130 (133)
Q Consensus 99 P~~~~~-~~g~~~~~~~g~-~~~~l~~~~~~~~~ 130 (133)
|+.+++ ++|+++..+.|. +.++++++++++++
T Consensus 139 P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 139 PETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred CeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 976666 899999999998 99999999998874
No 73
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.66 E-value=2.8e-15 Score=92.59 Aligned_cols=95 Identities=14% Similarity=0.165 Sum_probs=72.2
Q ss_pred HHhhhhhCCcEEEEEEecCCChhhhhhhHHH---HHHHhhC-CCeEEEEEeCCCChhhHhh--------cCCCCccEEEE
Q 045454 36 KVSESIKDGKIVVANFSAQWCSPCKKIAPVY---IQLADKY-PSMICLTVDVDELPEFSNS--------WGVTATPTFFF 103 (133)
Q Consensus 36 ~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~-~~v~~~~id~d~~~~~~~~--------~~v~~~P~~~~ 103 (133)
.+..+..++|+++|+|+++||++|+.+.+.. .++++.+ .++.++.+|.++.+++.+. |++.++|++++
T Consensus 7 al~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vf 86 (124)
T cd02955 7 AFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVF 86 (124)
T ss_pred HHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 3455557899999999999999999998743 3566654 5788999999998877553 58999999999
Q ss_pred E-eCCeEEEEeeCC------CHHHHHHHHHHHHH
Q 045454 104 L-KDGRQIDKLIGS------NKLELQRKTAAVSK 130 (133)
Q Consensus 104 ~-~~g~~~~~~~g~------~~~~l~~~~~~~~~ 130 (133)
+ .+|+.+....+. +...+.++++++.+
T Consensus 87 l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (124)
T cd02955 87 LTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIRE 120 (124)
T ss_pred ECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHHH
Confidence 9 889999766554 22356666666554
No 74
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.66 E-value=1.7e-15 Score=94.08 Aligned_cols=78 Identities=27% Similarity=0.436 Sum_probs=64.3
Q ss_pred hCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeC-----------------------CCChhhHhhcCCCCc
Q 045454 42 KDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDV-----------------------DELPEFSNSWGVTAT 98 (133)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~-----------------------d~~~~~~~~~~v~~~ 98 (133)
.++++++|+||++||++|+...|.++++.+.+ ++.++.++. |.+..+.+.|++.++
T Consensus 23 ~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~ 101 (127)
T cd03010 23 LKGKPYLLNVWASWCAPCREEHPVLMALARQG-RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV 101 (127)
T ss_pred cCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC
Confidence 35889999999999999999999999998877 466666653 445567888999999
Q ss_pred cEEEEE-eCCeEEEEeeCC-CHHH
Q 045454 99 PTFFFL-KDGRQIDKLIGS-NKLE 120 (133)
Q Consensus 99 P~~~~~-~~g~~~~~~~g~-~~~~ 120 (133)
|+.+++ ++|+++.++.|. +.+.
T Consensus 102 P~~~~ld~~G~v~~~~~G~~~~~~ 125 (127)
T cd03010 102 PETFLIDGDGIIRYKHVGPLTPEV 125 (127)
T ss_pred CeEEEECCCceEEEEEeccCChHh
Confidence 976666 899999999998 6554
No 75
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.65 E-value=4.4e-15 Score=103.05 Aligned_cols=88 Identities=20% Similarity=0.277 Sum_probs=71.8
Q ss_pred hCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCC-----------ChhhHhhcCCCCccEEEEEeC-CeE
Q 045454 42 KDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDE-----------LPEFSNSWGVTATPTFFFLKD-GRQ 109 (133)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~-----------~~~~~~~~~v~~~P~~~~~~~-g~~ 109 (133)
..++++||+||++||++|+.+.|.|.++++++ ++.++.|+.|. +..+.++|+|.++|+++++.. |+.
T Consensus 164 l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y-g~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 164 LAKKSGLFFFFKSDCPYCHQQAPILQAFEDRY-GIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ 242 (271)
T ss_pred hcCCeEEEEEECCCCccHHHHhHHHHHHHHHc-CcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence 36889999999999999999999999999999 46677777765 346889999999999999954 555
Q ss_pred EE-EeeCC-CHHHHHHHHHHHHH
Q 045454 110 ID-KLIGS-NKLELQRKTAAVSK 130 (133)
Q Consensus 110 ~~-~~~g~-~~~~l~~~~~~~~~ 130 (133)
+. ...|. +.++|.+.+..+..
T Consensus 243 v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 243 FTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEEEeCCCCHHHHHHHHHHHhc
Confidence 44 45587 89999888876643
No 76
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.64 E-value=1.7e-15 Score=95.90 Aligned_cols=71 Identities=20% Similarity=0.367 Sum_probs=58.5
Q ss_pred hCCcEEEEEEecCCChhhhhhhHHHHHHHhhC---------CCeEEEEEeCCCCh-------------------------
Q 045454 42 KDGKIVVANFSAQWCSPCKKIAPVYIQLADKY---------PSMICLTVDVDELP------------------------- 87 (133)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~---------~~v~~~~id~d~~~------------------------- 87 (133)
..+++++|+|||+||++|+++.|.|.++.+++ .++.++.|+.|++.
T Consensus 23 ~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~ 102 (146)
T cd03008 23 LENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRR 102 (146)
T ss_pred hCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHH
Confidence 47899999999999999999999999987643 24888888876431
Q ss_pred hhHhhcCCCCccEEEEE-eCCeEEEE
Q 045454 88 EFSNSWGVTATPTFFFL-KDGRQIDK 112 (133)
Q Consensus 88 ~~~~~~~v~~~P~~~~~-~~g~~~~~ 112 (133)
.+.++|++.++|+++++ ++|+++.+
T Consensus 103 ~l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 103 ELEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHHcCCCCCCEEEEECCCCcEEee
Confidence 46778899999999999 78988755
No 77
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.63 E-value=2.8e-15 Score=83.21 Aligned_cols=62 Identities=19% Similarity=0.468 Sum_probs=55.9
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCccEEEEEeCCeEE
Q 045454 47 VVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFLKDGRQI 110 (133)
Q Consensus 47 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~g~~~ 110 (133)
-+.+|+++||++|+.+.+.+++++..++++.+..+|.++++++.++|++.++|++++ +|+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~~ 63 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKVE 63 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEEE
Confidence 467899999999999999999998888889999999999999999999999999874 56654
No 78
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.63 E-value=6.7e-15 Score=108.62 Aligned_cols=103 Identities=24% Similarity=0.435 Sum_probs=83.4
Q ss_pred CcCeEEeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC----CeEEEEEeCCCChhhHhhcCCC
Q 045454 21 SKNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP----SMICLTVDVDELPEFSNSWGVT 96 (133)
Q Consensus 21 ~~~~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~id~d~~~~~~~~~~v~ 96 (133)
.+.+.. .+..+|.+.+. ..++.++|+||++||++|+.+.|.++++++.+. ++.++.+|++.+.- .. +++.
T Consensus 345 ~~~v~~-l~~~~f~~~v~---~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~-~~-~~i~ 418 (462)
T TIGR01130 345 EGPVKV-LVGKNFDEIVL---DETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDV-PP-FEVE 418 (462)
T ss_pred CCccEE-eeCcCHHHHhc---cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCcc-CC-CCcc
Confidence 344443 45788988775 358999999999999999999999999998885 48899999997753 33 9999
Q ss_pred CccEEEEEeCCeEE--EEeeCC-CHHHHHHHHHHHH
Q 045454 97 ATPTFFFLKDGRQI--DKLIGS-NKLELQRKTAAVS 129 (133)
Q Consensus 97 ~~P~~~~~~~g~~~--~~~~g~-~~~~l~~~~~~~~ 129 (133)
++|++++|++|+.. ..+.|. +.+.|.+++.+..
T Consensus 419 ~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~ 454 (462)
T TIGR01130 419 GFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHA 454 (462)
T ss_pred ccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcC
Confidence 99999999877542 467777 9999999988754
No 79
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.62 E-value=1.5e-15 Score=104.63 Aligned_cols=89 Identities=26% Similarity=0.518 Sum_probs=77.2
Q ss_pred hCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCC----eEEEEEeCCCChhhHhhcCCCCccEEEEEeCCeEEEEeeCCC
Q 045454 42 KDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPS----MICLTVDVDELPEFSNSWGVTATPTFFFLKDGRQIDKLIGSN 117 (133)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~----v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~ 117 (133)
+++..++|.||||||++|+++.|.|.++..++++ +++..+|++..+.++..|+|+++||+.++++|-.+....|..
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~dYRG~R~ 120 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAIDYRGGRE 120 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeeecCCCcc
Confidence 5788999999999999999999999999877753 788899999999999999999999999999887765544458
Q ss_pred HHHHHHHHHHHHH
Q 045454 118 KLELQRKTAAVSK 130 (133)
Q Consensus 118 ~~~l~~~~~~~~~ 130 (133)
.+.+..+..+...
T Consensus 121 Kd~iieFAhR~a~ 133 (468)
T KOG4277|consen 121 KDAIIEFAHRCAA 133 (468)
T ss_pred HHHHHHHHHhccc
Confidence 8889888776544
No 80
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.62 E-value=4.9e-15 Score=87.56 Aligned_cols=66 Identities=38% Similarity=0.702 Sum_probs=54.7
Q ss_pred CcEEEEEEecCCChhhhhhhHHHHHHHhhCC---CeEEEEEeCCCC-------------------------hhhHhhcCC
Q 045454 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKYP---SMICLTVDVDEL-------------------------PEFSNSWGV 95 (133)
Q Consensus 44 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~id~d~~-------------------------~~~~~~~~v 95 (133)
+++++|+||++||++|+...|.|.++.++++ ++.++.|..|+. ..+.+.|++
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 5899999999999999999999999999998 599999988753 247888999
Q ss_pred CCccEEEEE-eCCeE
Q 045454 96 TATPTFFFL-KDGRQ 109 (133)
Q Consensus 96 ~~~P~~~~~-~~g~~ 109 (133)
.++|+++++ ++|++
T Consensus 81 ~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 81 NGIPTLVLLDPDGKI 95 (95)
T ss_dssp TSSSEEEEEETTSBE
T ss_pred CcCCEEEEECCCCCC
Confidence 999999999 66753
No 81
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.61 E-value=3.1e-14 Score=92.80 Aligned_cols=83 Identities=23% Similarity=0.380 Sum_probs=68.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCC-------------hhhHhhcCC--CCccEEEEE-eCCeEE-
Q 045454 48 VANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDEL-------------PEFSNSWGV--TATPTFFFL-KDGRQI- 110 (133)
Q Consensus 48 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~-------------~~~~~~~~v--~~~P~~~~~-~~g~~~- 110 (133)
+|+||++||++|++..|.|+++++++ ++.++.++.|+. ..+.+.|++ .++|+.+++ ++|+.+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~-g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY-GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc-CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 77899999999999999999999998 577777776643 225667885 699998888 889886
Q ss_pred EEeeCC-CHHHHHHHHHHHHHh
Q 045454 111 DKLIGS-NKLELQRKTAAVSKL 131 (133)
Q Consensus 111 ~~~~g~-~~~~l~~~~~~~~~~ 131 (133)
..+.|. +..++++.+++++..
T Consensus 152 ~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 152 PLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred EEEECCCCHHHHHHHHHHHHhh
Confidence 478999 999999999888753
No 82
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.61 E-value=2.5e-14 Score=87.40 Aligned_cols=100 Identities=15% Similarity=0.186 Sum_probs=82.6
Q ss_pred hhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHH-H--HHHHhhCC-CeEEEEEeCC--CChhhHhhcCCCCccEEEEE
Q 045454 31 VSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPV-Y--IQLADKYP-SMICLTVDVD--ELPEFSNSWGVTATPTFFFL 104 (133)
Q Consensus 31 ~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~-l--~~~~~~~~-~v~~~~id~d--~~~~~~~~~~v~~~P~~~~~ 104 (133)
.+|++.+..+..++|+++|+|+++||++|+.+... | ..+.+.+. ++.++.+|.+ +...+.+.|++.++|+++++
T Consensus 4 gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i 83 (114)
T cd02958 4 GSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAII 83 (114)
T ss_pred CCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEE
Confidence 46788888888899999999999999999998664 3 34454443 5777778876 45678899999999999999
Q ss_pred -e-CCeEEEEeeCC-CHHHHHHHHHHHHH
Q 045454 105 -K-DGRQIDKLIGS-NKLELQRKTAAVSK 130 (133)
Q Consensus 105 -~-~g~~~~~~~g~-~~~~l~~~~~~~~~ 130 (133)
. +|+.+.+..|. +.+++...++++.+
T Consensus 84 ~~~~g~~l~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 84 DPRTGEVLKVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred eCccCcEeEEEcCCCCHHHHHHHHHHHHh
Confidence 5 79999999999 99999998888764
No 83
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.60 E-value=2.3e-14 Score=93.26 Aligned_cols=86 Identities=33% Similarity=0.620 Sum_probs=74.5
Q ss_pred CCcEEEEEEecCCChhhhhhhHHHHHHHhhCC--CeEEEEEeCCC----------------------ChhhHhhcCCCCc
Q 045454 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYP--SMICLTVDVDE----------------------LPEFSNSWGVTAT 98 (133)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~id~d~----------------------~~~~~~~~~v~~~ 98 (133)
.+++++|+||++||++|+...+.+.++.++++ ++.++.++.+. +..+.++|++..+
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 57899999999999999999999999999885 38888888753 4567899999999
Q ss_pred cEEEEE-eCCeEEEEeeCC-CHHHHHHHHHHH
Q 045454 99 PTFFFL-KDGRQIDKLIGS-NKLELQRKTAAV 128 (133)
Q Consensus 99 P~~~~~-~~g~~~~~~~g~-~~~~l~~~~~~~ 128 (133)
|+++++ ++|+++..+.|. +.+++.++++++
T Consensus 140 P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 140 PTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 998888 789999888998 888888888764
No 84
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.60 E-value=1.6e-14 Score=84.45 Aligned_cols=76 Identities=17% Similarity=0.328 Sum_probs=66.9
Q ss_pred hCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCccEEEEEeCCeEEEEeeCC-CHHH
Q 045454 42 KDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFLKDGRQIDKLIGS-NKLE 120 (133)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~ 120 (133)
.++.+-+..|+++||++|....+.++++++.++++.+..+|.++.++++++|+|.++|++++ +|+.+.. |. +.++
T Consensus 10 l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~~--G~~~~~e 85 (89)
T cd03026 10 LNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFGF--GRMTLEE 85 (89)
T ss_pred cCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEEe--CCCCHHH
Confidence 36788899999999999999999999999999999999999999999999999999999974 7887654 65 5444
Q ss_pred H
Q 045454 121 L 121 (133)
Q Consensus 121 l 121 (133)
+
T Consensus 86 ~ 86 (89)
T cd03026 86 I 86 (89)
T ss_pred H
Confidence 3
No 85
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.60 E-value=1.4e-14 Score=82.35 Aligned_cols=70 Identities=20% Similarity=0.217 Sum_probs=56.4
Q ss_pred EEEecCCChhhhhhhHHHHHHHhhCCC-eEEEEEeCCCChhhHhhcCCCCccEEEEEeCCeEEEEeeCC--CHHHHHHHH
Q 045454 49 ANFSAQWCSPCKKIAPVYIQLADKYPS-MICLTVDVDELPEFSNSWGVTATPTFFFLKDGRQIDKLIGS--NKLELQRKT 125 (133)
Q Consensus 49 v~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~--~~~~l~~~~ 125 (133)
|.||++||++|+.+.|.+++++++++. +.++.+| .++.+.+|++.++|++++ +|+.+ +.|. ..+++.+++
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~l 75 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEIL 75 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHHh
Confidence 689999999999999999999999864 7776666 344478899999999998 88887 6664 546666654
No 86
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.59 E-value=3e-14 Score=88.17 Aligned_cols=103 Identities=14% Similarity=0.171 Sum_probs=72.0
Q ss_pred chhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHH---HHHhhC-CCeEEEEEeCCCChhhHhhcCCCCccEEEEE
Q 045454 29 TMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYI---QLADKY-PSMICLTVDVDELPEFSNSWGVTATPTFFFL 104 (133)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~---~~~~~~-~~v~~~~id~d~~~~~~~~~~v~~~P~~~~~ 104 (133)
...+|++.+..+.+++|+++|+|+++||++|+.+..... ++.+.. .++..+.++.+....-....+ .++||++|+
T Consensus 8 W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFl 86 (130)
T cd02960 8 WVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIMFV 86 (130)
T ss_pred chhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEEEE
Confidence 344788888888889999999999999999999988763 344444 356656666653211112234 689999999
Q ss_pred -eCCeEEEEeeCC-----------CHHHHHHHHHHHHHhh
Q 045454 105 -KDGRQIDKLIGS-----------NKLELQRKTAAVSKLL 132 (133)
Q Consensus 105 -~~g~~~~~~~g~-----------~~~~l~~~~~~~~~~~ 132 (133)
.+|+++.++.|. +.+.|.+-+++..++|
T Consensus 87 d~~g~vi~~i~Gy~~~~~~~y~~~~~~~~~~~m~~a~~~~ 126 (130)
T cd02960 87 DPSLTVRADITGRYSNRLYTYEPADIPLLIENMKKALKLL 126 (130)
T ss_pred CCCCCCcccccccccCccceeCcCcHHHHHHHHHHHHHHH
Confidence 889888877774 3345666666665554
No 87
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.59 E-value=1e-14 Score=91.00 Aligned_cols=71 Identities=25% Similarity=0.594 Sum_probs=58.4
Q ss_pred hCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC----CeEEEEEeCCCC------------------------hhhHhhc
Q 045454 42 KDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP----SMICLTVDVDEL------------------------PEFSNSW 93 (133)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~id~d~~------------------------~~~~~~~ 93 (133)
..+++++|+||++||++|+...|.+.++.+++. ++.++.++.|.. ..+.++|
T Consensus 16 ~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (131)
T cd03009 16 LEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTF 95 (131)
T ss_pred hCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHc
Confidence 368999999999999999999999998877652 567777776643 3567889
Q ss_pred CCCCccEEEEE-eCCeEEEE
Q 045454 94 GVTATPTFFFL-KDGRQIDK 112 (133)
Q Consensus 94 ~v~~~P~~~~~-~~g~~~~~ 112 (133)
++.++|+++++ ++|+++.+
T Consensus 96 ~v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 96 KIEGIPTLIILDADGEVVTT 115 (131)
T ss_pred CCCCCCEEEEECCCCCEEcc
Confidence 99999999999 68887754
No 88
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.59 E-value=9.9e-15 Score=91.33 Aligned_cols=71 Identities=28% Similarity=0.570 Sum_probs=57.8
Q ss_pred hCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC----CeEEEEEeCCCCh-------------------------hhHhh
Q 045454 42 KDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP----SMICLTVDVDELP-------------------------EFSNS 92 (133)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~id~d~~~-------------------------~~~~~ 92 (133)
.++++++|+||++||++|+...|.++++++.++ ++.++.++.+..+ .+.+.
T Consensus 15 ~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 94 (132)
T cd02964 15 LEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQ 94 (132)
T ss_pred hCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHH
Confidence 478999999999999999999999999887663 4777777776532 34567
Q ss_pred cCCCCccEEEEE-eCCeEEEE
Q 045454 93 WGVTATPTFFFL-KDGRQIDK 112 (133)
Q Consensus 93 ~~v~~~P~~~~~-~~g~~~~~ 112 (133)
|++.++|+++++ ++|+++.+
T Consensus 95 ~~v~~iPt~~lid~~G~iv~~ 115 (132)
T cd02964 95 FKVEGIPTLVVLKPDGDVVTT 115 (132)
T ss_pred cCCCCCCEEEEECCCCCEEch
Confidence 999999999999 68887754
No 89
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.58 E-value=3.2e-14 Score=113.87 Aligned_cols=88 Identities=26% Similarity=0.435 Sum_probs=76.2
Q ss_pred CCcEEEEEEecCCChhhhhhhHHHHHHHhhCCC--eEEEEEeC---------------------------CCChhhHhhc
Q 045454 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYPS--MICLTVDV---------------------------DELPEFSNSW 93 (133)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~id~---------------------------d~~~~~~~~~ 93 (133)
.++++||+|||+||++|+...|.|+++.++|++ +.++.+.. |....+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 689999999999999999999999999999964 66766631 2244677899
Q ss_pred CCCCccEEEEE-eCCeEEEEeeCC-CHHHHHHHHHHHHH
Q 045454 94 GVTATPTFFFL-KDGRQIDKLIGS-NKLELQRKTAAVSK 130 (133)
Q Consensus 94 ~v~~~P~~~~~-~~g~~~~~~~g~-~~~~l~~~~~~~~~ 130 (133)
++.++|+++++ ++|+++.++.|. ..+++.++++.++.
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 99999999999 899999999999 88999999998865
No 90
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.56 E-value=6e-14 Score=84.69 Aligned_cols=73 Identities=37% Similarity=0.766 Sum_probs=65.7
Q ss_pred CCcEEEEEEecCCChhhhhhhHHHHHHHhhC--CCeEEEEEeCCCC-----------------------hhhHhhcCCCC
Q 045454 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKY--PSMICLTVDVDEL-----------------------PEFSNSWGVTA 97 (133)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~--~~v~~~~id~d~~-----------------------~~~~~~~~v~~ 97 (133)
.+++++|+||++||++|+...+.+.++.+++ +++.++.++.+.. ..+.+.|++.+
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 4789999999999999999999999999988 5799999999886 67899999999
Q ss_pred ccEEEEE-eCCeEEEEeeC
Q 045454 98 TPTFFFL-KDGRQIDKLIG 115 (133)
Q Consensus 98 ~P~~~~~-~~g~~~~~~~g 115 (133)
+|+++++ ++|+++.++.|
T Consensus 98 ~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 98 LPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cceEEEECCCCcEEEEecC
Confidence 9999888 78999888765
No 91
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.55 E-value=2.3e-14 Score=98.62 Aligned_cols=95 Identities=18% Similarity=0.417 Sum_probs=81.1
Q ss_pred hhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHh----hCCC--eEEEEEeCCCChhhHhhcCCCCccEEEEE
Q 045454 31 VSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLAD----KYPS--MICLTVDVDELPEFSNSWGVTATPTFFFL 104 (133)
Q Consensus 31 ~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~----~~~~--v~~~~id~d~~~~~~~~~~v~~~P~~~~~ 104 (133)
.+++..+ ..+.+++|.|||+||+.++.+.|.+++.+. ++|+ +.+..+||+.+..++.+|.|..+||+-+|
T Consensus 4 ~N~~~il----~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvf 79 (375)
T KOG0912|consen 4 ENIDSIL----DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVF 79 (375)
T ss_pred ccHHHhh----ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeee
Confidence 3455555 468999999999999999999999987654 5563 99999999999999999999999999999
Q ss_pred eCCeEEE-EeeCC-CHHHHHHHHHHHH
Q 045454 105 KDGRQID-KLIGS-NKLELQRKTAAVS 129 (133)
Q Consensus 105 ~~g~~~~-~~~g~-~~~~l~~~~~~~~ 129 (133)
++|..+. .+-|. +.+.|.++|++.+
T Consensus 80 rnG~~~~rEYRg~RsVeaL~efi~kq~ 106 (375)
T KOG0912|consen 80 RNGEMMKREYRGQRSVEALIEFIEKQL 106 (375)
T ss_pred eccchhhhhhccchhHHHHHHHHHHHh
Confidence 9999988 55566 8899999988754
No 92
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.54 E-value=9.5e-14 Score=85.63 Aligned_cols=82 Identities=29% Similarity=0.556 Sum_probs=64.1
Q ss_pred hCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEe---------------------CCCChhhHhhcCCCCccE
Q 045454 42 KDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVD---------------------VDELPEFSNSWGVTATPT 100 (133)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id---------------------~d~~~~~~~~~~v~~~P~ 100 (133)
..+++++|+||++||++|+...|.+.++++.+. +..+.+| .|.+..+.++|++.++|+
T Consensus 18 ~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~ 96 (123)
T cd03011 18 LSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPA 96 (123)
T ss_pred hCCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccE
Confidence 356999999999999999999999999987753 2222222 134567899999999999
Q ss_pred EEEEeCCeEEEEeeCC-CHHHHHHH
Q 045454 101 FFFLKDGRQIDKLIGS-NKLELQRK 124 (133)
Q Consensus 101 ~~~~~~g~~~~~~~g~-~~~~l~~~ 124 (133)
++++.+|++...+.|. +.+.|.+.
T Consensus 97 ~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 97 IVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred EEEEcCCCeEEEEeccCCHHHHHhh
Confidence 9999545588889998 88877653
No 93
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.54 E-value=1.1e-13 Score=85.89 Aligned_cols=75 Identities=20% Similarity=0.388 Sum_probs=63.1
Q ss_pred hCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC--CeEEEEEeCC---------------------------CChhhHhh
Q 045454 42 KDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP--SMICLTVDVD---------------------------ELPEFSNS 92 (133)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~id~d---------------------------~~~~~~~~ 92 (133)
.++++++|+||++||++|.+..|.|+++.++++ ++.++.++.+ ....+.+.
T Consensus 21 ~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~ 100 (126)
T cd03012 21 LRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRA 100 (126)
T ss_pred hCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHH
Confidence 367999999999999999999999999999986 4777777541 22346778
Q ss_pred cCCCCccEEEEE-eCCeEEEEeeCC
Q 045454 93 WGVTATPTFFFL-KDGRQIDKLIGS 116 (133)
Q Consensus 93 ~~v~~~P~~~~~-~~g~~~~~~~g~ 116 (133)
|++..+|+++++ ++|+++..+.|.
T Consensus 101 ~~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 101 YGNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred hCCCcCCeEEEECCCCcEEEEEecC
Confidence 999999999999 789999998875
No 94
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.53 E-value=4.4e-13 Score=83.09 Aligned_cols=97 Identities=13% Similarity=0.128 Sum_probs=83.0
Q ss_pred hhHHHHHhhhhhCCcEEEEEEecC--CChhhhhhhHHHHHHHhhCC-C-eEEEEEeCCCChhhHhhcCCCCccEEEEEeC
Q 045454 31 VSWEAKVSESIKDGKIVVANFSAQ--WCSPCKKIAPVYIQLADKYP-S-MICLTVDVDELPEFSNSWGVTATPTFFFLKD 106 (133)
Q Consensus 31 ~~~~~~~~~~~~~~~~~lv~f~~~--~C~~C~~~~~~l~~~~~~~~-~-v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~ 106 (133)
.++++.+ ......+|.|-.+ -++.+....-.|.+++++|+ + +.++.+|+|+++++..+|||+++||+++|++
T Consensus 25 ~~~~~~~----~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~Fkd 100 (132)
T PRK11509 25 SRLDDWL----TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTG 100 (132)
T ss_pred ccHHHHH----hCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEEC
Confidence 5666666 3455555555543 68999999999999999997 3 8999999999999999999999999999999
Q ss_pred CeEEEEeeCC-CHHHHHHHHHHHHHh
Q 045454 107 GRQIDKLIGS-NKLELQRKTAAVSKL 131 (133)
Q Consensus 107 g~~~~~~~g~-~~~~l~~~~~~~~~~ 131 (133)
|+.+.++.|. +..++.+++++++..
T Consensus 101 Gk~v~~i~G~~~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 101 GNYRGVLNGIHPWAELINLMRGLVEP 126 (132)
T ss_pred CEEEEEEeCcCCHHHHHHHHHHHhcC
Confidence 9999999999 999999999988753
No 95
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=8.8e-14 Score=101.03 Aligned_cols=89 Identities=28% Similarity=0.480 Sum_probs=79.1
Q ss_pred hCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCC-eEEEEEeCCCChhhHhhcCCCCccEEEEEeCCeEEEEeeCC-CHH
Q 045454 42 KDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPS-MICLTVDVDELPEFSNSWGVTATPTFFFLKDGRQIDKLIGS-NKL 119 (133)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~ 119 (133)
..++.++|.||++||++|+.+.|.+.+++..+.+ +.+..+|++++.+++++|+|.++||+.++..|.....+.|. +.+
T Consensus 45 ~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~~~~~~ 124 (383)
T KOG0191|consen 45 KDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPIDYSGPRNAE 124 (383)
T ss_pred ccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCceeeccCcccHH
Confidence 5789999999999999999999999999998876 89999999999999999999999999999888555566677 888
Q ss_pred HHHHHHHHHHH
Q 045454 120 ELQRKTAAVSK 130 (133)
Q Consensus 120 ~l~~~~~~~~~ 130 (133)
.+..++...++
T Consensus 125 ~~~~~~~~~~~ 135 (383)
T KOG0191|consen 125 SLAEFLIKELE 135 (383)
T ss_pred HHHHHHHHhhc
Confidence 88888776654
No 96
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.52 E-value=2.4e-13 Score=86.23 Aligned_cols=75 Identities=37% Similarity=0.701 Sum_probs=64.3
Q ss_pred hCCcEEEEEEecC-CChhhhhhhHHHHHHHhhC--CCeEEEEEeCCC---------------------ChhhHhhcCCC-
Q 045454 42 KDGKIVVANFSAQ-WCSPCKKIAPVYIQLADKY--PSMICLTVDVDE---------------------LPEFSNSWGVT- 96 (133)
Q Consensus 42 ~~~~~~lv~f~~~-~C~~C~~~~~~l~~~~~~~--~~v~~~~id~d~---------------------~~~~~~~~~v~- 96 (133)
..+++++|.||++ |||+|+...|.+.++.+.+ +++.++.+..+. ...+.++|++.
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 4789999999999 9999999999999998875 357777777543 34678889988
Q ss_pred --------CccEEEEE-eCCeEEEEeeCC
Q 045454 97 --------ATPTFFFL-KDGRQIDKLIGS 116 (133)
Q Consensus 97 --------~~P~~~~~-~~g~~~~~~~g~ 116 (133)
.+|+++++ ++|++++...|.
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~V~~~~~g~ 134 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGKVVYRHVGP 134 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSBEEEEEESS
T ss_pred ccccccCCeecEEEEEECCCEEEEEEeCC
Confidence 99998777 999999999999
No 97
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.50 E-value=4.6e-13 Score=87.70 Aligned_cols=89 Identities=19% Similarity=0.217 Sum_probs=69.1
Q ss_pred hCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEE------EEEeCCC-----------------------------C
Q 045454 42 KDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMIC------LTVDVDE-----------------------------L 86 (133)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~------~~id~d~-----------------------------~ 86 (133)
..+++.+|.|||+||++|+...|.+.+++.+- +.+ ..||.|+ .
T Consensus 57 l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~--~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~ 134 (184)
T TIGR01626 57 LAGKVRVVHHIAGRTSAKEXNASLIDAIKAAK--FPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDK 134 (184)
T ss_pred cCCCEEEEEEEecCCChhhccchHHHHHHHcC--CCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCc
Confidence 46999999999999999999999999996532 222 4445443 2
Q ss_pred hhhHhhcCCCCccEE-EEE-eCCeEEEEeeCC-CHHHHHHHHHHHHHhh
Q 045454 87 PEFSNSWGVTATPTF-FFL-KDGRQIDKLIGS-NKLELQRKTAAVSKLL 132 (133)
Q Consensus 87 ~~~~~~~~v~~~P~~-~~~-~~g~~~~~~~g~-~~~~l~~~~~~~~~~~ 132 (133)
.....+|++.++|+. +++ ++|+++..+.|. +.+++++.+..+.+++
T Consensus 135 g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~~li~~ll 183 (184)
T TIGR01626 135 GAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVISLVNGLL 183 (184)
T ss_pred chHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHHHh
Confidence 235678899999866 555 999999999999 9999988766666554
No 98
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.47 E-value=5.5e-13 Score=81.15 Aligned_cols=70 Identities=23% Similarity=0.324 Sum_probs=53.6
Q ss_pred CCcEEEEEEecCCChhhhhhhHHHHHHHhhCC-CeEEEEEeCC---C-----------------ChhhHhhcCCCCccEE
Q 045454 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYP-SMICLTVDVD---E-----------------LPEFSNSWGVTATPTF 101 (133)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~id~d---~-----------------~~~~~~~~~v~~~P~~ 101 (133)
++++++|+||++||++|+...|.++++.+.+. ++.++.+.-+ + ...+.++|++..+|+.
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~ 99 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA 99 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence 47899999999999999999999999988774 4655555211 1 1245677888899998
Q ss_pred EEE-eCCeEEEE
Q 045454 102 FFL-KDGRQIDK 112 (133)
Q Consensus 102 ~~~-~~g~~~~~ 112 (133)
+++ ++|+++++
T Consensus 100 ~vid~~G~v~~~ 111 (114)
T cd02967 100 VLLDEAGVIAAK 111 (114)
T ss_pred EEECCCCeEEec
Confidence 888 67877654
No 99
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.46 E-value=4.2e-13 Score=91.19 Aligned_cols=89 Identities=13% Similarity=0.269 Sum_probs=69.3
Q ss_pred hCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC--CeEEEEEeCCC-------C----hhhH-hhcC-------------
Q 045454 42 KDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP--SMICLTVDVDE-------L----PEFS-NSWG------------- 94 (133)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~id~d~-------~----~~~~-~~~~------------- 94 (133)
..++++||+||++||+.|....|.|.++.++++ ++.++.|+++. . ..++ ++++
T Consensus 97 ~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G 176 (236)
T PLN02399 97 FKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNG 176 (236)
T ss_pred hCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCc
Confidence 367999999999999999999999999999885 58888888631 1 1111 1211
Q ss_pred ---------------------CCCccEEEEE-eCCeEEEEeeCC-CHHHHHHHHHHHHH
Q 045454 95 ---------------------VTATPTFFFL-KDGRQIDKLIGS-NKLELQRKTAAVSK 130 (133)
Q Consensus 95 ---------------------v~~~P~~~~~-~~g~~~~~~~g~-~~~~l~~~~~~~~~ 130 (133)
++..|+.+++ ++|+++.++.|. +.++|++.|+++++
T Consensus 177 ~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 177 PSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred chhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 1235777777 999999999999 88999999988875
No 100
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.46 E-value=1.5e-12 Score=86.20 Aligned_cols=86 Identities=20% Similarity=0.274 Sum_probs=64.3
Q ss_pred hCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCC--------------------CChhhHhhcCCCCccEE
Q 045454 42 KDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVD--------------------ELPEFSNSWGVTATPTF 101 (133)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d--------------------~~~~~~~~~~v~~~P~~ 101 (133)
..+++++|+||++||+.|+...|.+.++.+.+ ++.++.+..+ ...++.+.|++..+|+.
T Consensus 72 ~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~ 150 (189)
T TIGR02661 72 APGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG 150 (189)
T ss_pred cCCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence 36789999999999999999999999988765 3344444322 13456788999999987
Q ss_pred EEE-eCCeEEEEeeCCCHHHHHHHHHHH
Q 045454 102 FFL-KDGRQIDKLIGSNKLELQRKTAAV 128 (133)
Q Consensus 102 ~~~-~~g~~~~~~~g~~~~~l~~~~~~~ 128 (133)
+++ ++|++..+......+.+++.++.+
T Consensus 151 ~lID~~G~I~~~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 151 VLLDQDGKIRAKGLTNTREHLESLLEAD 178 (189)
T ss_pred EEECCCCeEEEccCCCCHHHHHHHHHHH
Confidence 777 789887653323667777777655
No 101
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.43 E-value=1.5e-12 Score=86.76 Aligned_cols=89 Identities=20% Similarity=0.277 Sum_probs=66.9
Q ss_pred CCcEEEEEEecCCChhhhhhhHHHHHHHhhCC--CeEEEEEeCCC-------Ch----hhHhhcCC--------------
Q 045454 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYP--SMICLTVDVDE-------LP----EFSNSWGV-------------- 95 (133)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~id~d~-------~~----~~~~~~~v-------------- 95 (133)
.++++||.||++||++|....|.|.++.+++. ++.++.+++++ .+ .+++++++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~ 117 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGEN 117 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCc
Confidence 68999999999999999999999999999985 58888887631 11 12222221
Q ss_pred ----------------------CCcc---EEEEE-eCCeEEEEeeCC-CHHHHHHHHHHHHHh
Q 045454 96 ----------------------TATP---TFFFL-KDGRQIDKLIGS-NKLELQRKTAAVSKL 131 (133)
Q Consensus 96 ----------------------~~~P---~~~~~-~~g~~~~~~~g~-~~~~l~~~~~~~~~~ 131 (133)
..+| +.+++ ++|+++.++.|. +.+++.+.|+++++.
T Consensus 118 ~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~ 180 (199)
T PTZ00056 118 THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLGV 180 (199)
T ss_pred cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 1223 34444 999999999998 888898888887653
No 102
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=6.2e-12 Score=76.08 Aligned_cols=105 Identities=18% Similarity=0.431 Sum_probs=88.6
Q ss_pred eEEeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCC-eEEEEEeCCCChhhHhhcCCCCccEEE
Q 045454 24 VHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPS-MICLTVDVDELPEFSNSWGVTATPTFF 102 (133)
Q Consensus 24 ~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~id~d~~~~~~~~~~v~~~P~~~ 102 (133)
++.+++.+..++.+.. ...++++|.|+..|-|.|..+...|.++++..++ ..++.+|+|+-+++.+.|++...|+++
T Consensus 5 Lp~L~s~~~VdqaI~~--t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvm 82 (142)
T KOG3414|consen 5 LPTLHSGWEVDQAILS--TEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVM 82 (142)
T ss_pred ccccccHHHHHHHHhc--ccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEE
Confidence 4567788899988875 4789999999999999999999999999999988 778889999999999999999999999
Q ss_pred EEeCCeEEEEeeC---------C--CHHHHHHHHHHHHH
Q 045454 103 FLKDGRQIDKLIG---------S--NKLELQRKTAAVSK 130 (133)
Q Consensus 103 ~~~~g~~~~~~~g---------~--~~~~l~~~~~~~~~ 130 (133)
+|.+++.+....| . +.+++++.++.+.+
T Consensus 83 fFfn~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~iyR 121 (142)
T KOG3414|consen 83 FFFNNKHMKIDLGTGDNNKINFAFEDKQEFIDIIETIYR 121 (142)
T ss_pred EEEcCceEEEeeCCCCCceEEEEeccHHHHHHHHHHHHH
Confidence 9988887764444 3 56667776665543
No 103
>smart00594 UAS UAS domain.
Probab=99.41 E-value=4.7e-12 Score=78.24 Aligned_cols=97 Identities=16% Similarity=0.110 Sum_probs=75.4
Q ss_pred chhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHH---HHHHhhCC-CeEEEEEeCC--CChhhHhhcCCCCccEEE
Q 045454 29 TMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVY---IQLADKYP-SMICLTVDVD--ELPEFSNSWGVTATPTFF 102 (133)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~-~v~~~~id~d--~~~~~~~~~~v~~~P~~~ 102 (133)
-..++++.+..+..++|.++|+|+++||++|+.+.... .++.+.+. ++.+..+|.+ +...++.+|++.++|+++
T Consensus 12 ~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~ 91 (122)
T smart00594 12 YQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVA 91 (122)
T ss_pred eeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEE
Confidence 34578888888878899999999999999999986654 23444443 5777777765 456789999999999999
Q ss_pred EE-eCC-----eEEEEeeCC-CHHHHHHHH
Q 045454 103 FL-KDG-----RQIDKLIGS-NKLELQRKT 125 (133)
Q Consensus 103 ~~-~~g-----~~~~~~~g~-~~~~l~~~~ 125 (133)
++ .+| ..+.++.|. +.+++...+
T Consensus 92 ~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 92 IVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 99 555 457788899 888887765
No 104
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.40 E-value=1.2e-12 Score=75.48 Aligned_cols=74 Identities=32% Similarity=0.637 Sum_probs=58.3
Q ss_pred hhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHH---HHHHhhC-CCeEEEEEeCCCChhhHhhcCCCCccEEEEEe
Q 045454 31 VSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVY---IQLADKY-PSMICLTVDVDELPEFSNSWGVTATPTFFFLK 105 (133)
Q Consensus 31 ~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~-~~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~ 105 (133)
+++++.+.++.+++++++|+|+++||++|+.+...+ .++.+.+ +++.++.+|.++.....+..+ .++|+++++.
T Consensus 4 ~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ld 81 (82)
T PF13899_consen 4 SDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLD 81 (82)
T ss_dssp SSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEE
T ss_pred hhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeC
Confidence 468888888889999999999999999999998887 3455523 578999999987665443222 6799999873
No 105
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.39 E-value=2.3e-12 Score=95.75 Aligned_cols=102 Identities=22% Similarity=0.423 Sum_probs=82.8
Q ss_pred EEeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHH---HHHhhCCCeEEEEEeCCCC----hhhHhhcCCCC
Q 045454 25 HLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYI---QLADKYPSMICLTVDVDEL----PEFSNSWGVTA 97 (133)
Q Consensus 25 ~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~---~~~~~~~~v~~~~id~d~~----~~~~~~~~v~~ 97 (133)
..+++...+++.+.+. .+|+++|+|||+||..||.+.+..- +...+.+++.+.+.|.+++ .++.++|++-+
T Consensus 457 q~~s~~~~L~~~la~~--~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G 534 (569)
T COG4232 457 QPISPLAELDQALAEA--KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFG 534 (569)
T ss_pred hccCCHHHHHHHHHhC--CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCC
Confidence 5566655667666543 3459999999999999999998874 4556678999999999864 46889999999
Q ss_pred ccEEEEE-eCCeEEEEeeCC-CHHHHHHHHHHH
Q 045454 98 TPTFFFL-KDGRQIDKLIGS-NKLELQRKTAAV 128 (133)
Q Consensus 98 ~P~~~~~-~~g~~~~~~~g~-~~~~l~~~~~~~ 128 (133)
+|++++| .+|+......|. +.+.+.+.+++.
T Consensus 535 ~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 535 VPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 9999999 588888788898 999999888764
No 106
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.38 E-value=4e-12 Score=87.83 Aligned_cols=105 Identities=18% Similarity=0.257 Sum_probs=81.7
Q ss_pred CcCeEEeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCccE
Q 045454 21 SKNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPT 100 (133)
Q Consensus 21 ~~~~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~P~ 100 (133)
-+.+..+.+.+.|.+.+... ..+..+||+||.+.++.|..+...|..++.+|+.+.|+.|..+..+ +...|....+|+
T Consensus 124 fG~v~ei~~~e~~l~~ie~~-~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~~~LPt 201 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKE-SKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFPDKNLPT 201 (265)
T ss_dssp --SEEE--SHHHHHHHCCTS-STT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-TTC-SE
T ss_pred CceEEEccChhhHHHHHhcc-CCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCcccCCCE
Confidence 46778888888888888654 4567899999999999999999999999999999999999998876 789999999999
Q ss_pred EEEEeCCeEEEEeeCC--------CHHHHHHHHHH
Q 045454 101 FFFLKDGRQIDKLIGS--------NKLELQRKTAA 127 (133)
Q Consensus 101 ~~~~~~g~~~~~~~g~--------~~~~l~~~~~~ 127 (133)
+++|++|..+..++|. ...+|+.++.+
T Consensus 202 llvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~ 236 (265)
T PF02114_consen 202 LLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIE 236 (265)
T ss_dssp EEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHT
T ss_pred EEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHH
Confidence 9999999999988874 33456655543
No 107
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=99.38 E-value=3.1e-12 Score=79.64 Aligned_cols=85 Identities=26% Similarity=0.529 Sum_probs=57.2
Q ss_pred hCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhc---CCCCccEEEEE-eCCeEEEEeeCCC
Q 045454 42 KDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSW---GVTATPTFFFL-KDGRQIDKLIGSN 117 (133)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~---~v~~~P~~~~~-~~g~~~~~~~g~~ 117 (133)
...+..++.|..+|||+|....|.+.++++..+++.+-.+..|+++++.++| |.+++|+++++ .+|+.+.+ .|+.
T Consensus 39 ~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~-wger 117 (129)
T PF14595_consen 39 IQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGR-WGER 117 (129)
T ss_dssp --S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEE-EESS
T ss_pred cCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEE-EcCC
Confidence 3677889999999999999999999999999999888889999999988887 67889999999 56676654 4555
Q ss_pred HHHHHHHHHH
Q 045454 118 KLELQRKTAA 127 (133)
Q Consensus 118 ~~~l~~~~~~ 127 (133)
+..+.+++++
T Consensus 118 P~~~~~~~~~ 127 (129)
T PF14595_consen 118 PKEVQELVDE 127 (129)
T ss_dssp -HHHH-----
T ss_pred CHHHhhcccc
Confidence 5666665554
No 108
>PLN02412 probable glutathione peroxidase
Probab=99.38 E-value=7.8e-12 Score=81.24 Aligned_cols=88 Identities=16% Similarity=0.266 Sum_probs=69.1
Q ss_pred CCcEEEEEEecCCChhhhhhhHHHHHHHhhCC--CeEEEEEeCCC-------C-hhh----Hhh----------------
Q 045454 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYP--SMICLTVDVDE-------L-PEF----SNS---------------- 92 (133)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~id~d~-------~-~~~----~~~---------------- 92 (133)
.++++||+||++||+.|+...|.|+++.++++ ++.++.|+++. . .++ .++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~ 107 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK 107 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence 57999999999999999999999999999985 58888887631 1 111 111
Q ss_pred -----cC-------------CCCccEEEEE-eCCeEEEEeeCC-CHHHHHHHHHHHHH
Q 045454 93 -----WG-------------VTATPTFFFL-KDGRQIDKLIGS-NKLELQRKTAAVSK 130 (133)
Q Consensus 93 -----~~-------------v~~~P~~~~~-~~g~~~~~~~g~-~~~~l~~~~~~~~~ 130 (133)
|+ +...|+.+++ ++|+++.++.|. +.++++..|+.+++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 11 3445887777 999999999999 99999999988865
No 109
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=5.1e-13 Score=98.60 Aligned_cols=105 Identities=18% Similarity=0.347 Sum_probs=77.4
Q ss_pred CcCeEEeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC---C-eEEEEEeCC--CChhhHhhcC
Q 045454 21 SKNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP---S-MICLTVDVD--ELPEFSNSWG 94 (133)
Q Consensus 21 ~~~~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~---~-v~~~~id~d--~~~~~~~~~~ 94 (133)
+.++. ..+.++|...+.. ..+-.+|.||++||++|+++.|.++++++... . +.++.|||- .|..+|+.|+
T Consensus 38 ~D~ii-~Ld~~tf~~~v~~---~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~ 113 (606)
T KOG1731|consen 38 DDPII-ELDVDTFNAAVFG---SRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFS 113 (606)
T ss_pred CCCeE-EeehhhhHHHhcc---cchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcC
Confidence 34444 4467899998854 34688999999999999999999999998873 2 888999984 6889999999
Q ss_pred CCCccEEEEEeCCeEE----EEeeCC-CHHHHHHHHHHHH
Q 045454 95 VTATPTFFFLKDGRQI----DKLIGS-NKLELQRKTAAVS 129 (133)
Q Consensus 95 v~~~P~~~~~~~g~~~----~~~~g~-~~~~l~~~~~~~~ 129 (133)
|+++|++.+|..+-.- ..+.|. ...++.+++.+.+
T Consensus 114 V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~l 153 (606)
T KOG1731|consen 114 VSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTL 153 (606)
T ss_pred CCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHH
Confidence 9999999999432111 123344 4555555555443
No 110
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.36 E-value=2e-11 Score=79.46 Aligned_cols=88 Identities=24% Similarity=0.446 Sum_probs=70.2
Q ss_pred CCcEEEEEEecCCChhhhhhhHHHHHHHhhCC--CeEEEEEeCCC-----------------------------ChhhHh
Q 045454 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYP--SMICLTVDVDE-----------------------------LPEFSN 91 (133)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~id~d~-----------------------------~~~~~~ 91 (133)
.++++||+||++||+.|....+.|.++.++++ ++.++.+..|. ...+.+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 67999999999999999999999999999886 58888887753 123577
Q ss_pred hcCCCCccEEEEE-eCCeEEEEee---------CC-CHHHHHHHHHHHHH
Q 045454 92 SWGVTATPTFFFL-KDGRQIDKLI---------GS-NKLELQRKTAAVSK 130 (133)
Q Consensus 92 ~~~v~~~P~~~~~-~~g~~~~~~~---------g~-~~~~l~~~~~~~~~ 130 (133)
.|++..+|+++++ ++|+++.... +. +..++.+.|+.++.
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 153 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLA 153 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHc
Confidence 8899999998888 7898876531 12 55778888877764
No 111
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.34 E-value=1.3e-11 Score=79.05 Aligned_cols=87 Identities=15% Similarity=0.221 Sum_probs=64.7
Q ss_pred hCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC--CeEEEEEeCC--------CC---hhhHhh-cC-------------
Q 045454 42 KDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP--SMICLTVDVD--------EL---PEFSNS-WG------------- 94 (133)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~id~d--------~~---~~~~~~-~~------------- 94 (133)
..++++||+||++||++|+...|.|.++.++++ ++.++.+++. .. ...+++ ++
T Consensus 20 ~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~ 99 (153)
T TIGR02540 20 YRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILG 99 (153)
T ss_pred hCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCC
Confidence 468899999999999999999999999999885 5888888751 11 111211 11
Q ss_pred ----------C---CCccE-----EEEEeCCeEEEEeeCC-CHHHHHHHHHHH
Q 045454 95 ----------V---TATPT-----FFFLKDGRQIDKLIGS-NKLELQRKTAAV 128 (133)
Q Consensus 95 ----------v---~~~P~-----~~~~~~g~~~~~~~g~-~~~~l~~~~~~~ 128 (133)
+ ..+|+ +++-++|+++.++.|. +.++|...|+++
T Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 100 SEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred CCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 1 14784 4444999999999999 888888877765
No 112
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=8.8e-12 Score=90.64 Aligned_cols=99 Identities=20% Similarity=0.322 Sum_probs=82.6
Q ss_pred chhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC---CeEEEEEeCCCChhhHhhcCCCCccEEEEEe
Q 045454 29 TMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP---SMICLTVDVDELPEFSNSWGVTATPTFFFLK 105 (133)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~ 105 (133)
+.++|...+. ..+..+++.||+|||++|+.+.|.+.+++..+. .+.+..+|++.+..++.++++..+|++.+|+
T Consensus 150 ~~~~~~~~~~---~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~ 226 (383)
T KOG0191|consen 150 TKDNFDETVK---DSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFP 226 (383)
T ss_pred cccchhhhhh---ccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEec
Confidence 3355665554 357889999999999999999999999998773 4899999999999999999999999999998
Q ss_pred CCeE-EEEeeCC-CHHHHHHHHHHHHH
Q 045454 106 DGRQ-IDKLIGS-NKLELQRKTAAVSK 130 (133)
Q Consensus 106 ~g~~-~~~~~g~-~~~~l~~~~~~~~~ 130 (133)
.|.. ...+.|. +...+..++.....
T Consensus 227 ~~~~~~~~~~~~R~~~~i~~~v~~~~~ 253 (383)
T KOG0191|consen 227 PGEEDIYYYSGLRDSDSIVSFVEKKER 253 (383)
T ss_pred CCCcccccccccccHHHHHHHHHhhcC
Confidence 7777 6666666 99999998887643
No 113
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=99.32 E-value=1.8e-10 Score=70.57 Aligned_cols=104 Identities=18% Similarity=0.428 Sum_probs=83.5
Q ss_pred eEEeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCC-eEEEEEeCCCChhhHhhcCCCCcc-EE
Q 045454 24 VHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPS-MICLTVDVDELPEFSNSWGVTATP-TF 101 (133)
Q Consensus 24 ~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~id~d~~~~~~~~~~v~~~P-~~ 101 (133)
++.+++..+.++.+.. .++++++|.|+.+|-+.|.++...|.+.+++.++ ..++.+|+++-|++.+.|++. -| |+
T Consensus 2 L~~L~s~~~VDqAI~~--e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tv 78 (133)
T PF02966_consen 2 LPHLHSGWHVDQAILS--EEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTV 78 (133)
T ss_dssp SEEE-SHHHHHHHHHH---SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEE
T ss_pred CcccCccchHHHHHhc--cCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEE
Confidence 4567888999998876 4899999999999999999999999999999987 788999999999999999999 66 57
Q ss_pred EEEeCCeEEEEeeC---------C--CHHHHHHHHHHHHH
Q 045454 102 FFLKDGRQIDKLIG---------S--NKLELQRKTAAVSK 130 (133)
Q Consensus 102 ~~~~~g~~~~~~~g---------~--~~~~l~~~~~~~~~ 130 (133)
+||.+|+.+....| . +.+++.+.++.+..
T Consensus 79 mFF~rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~iyr 118 (133)
T PF02966_consen 79 MFFFRNKHMMVDFGTGNNNKINWAFEDKQEFIDIIETIYR 118 (133)
T ss_dssp EEEETTEEEEEESSSSSSSSBCS--SCHHHHHHHHHHHHH
T ss_pred EEEecCeEEEEEecCCCccEEEEEcCcHHHHHHHHHHHHH
Confidence 77777888775554 3 56777777766544
No 114
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.31 E-value=7.3e-12 Score=80.15 Aligned_cols=81 Identities=21% Similarity=0.387 Sum_probs=60.1
Q ss_pred CCcEEEEEEecCCChhhhhhhHHHHHHHhhCC--CeEEEEEeCCC-------Ch----hhHh------------------
Q 045454 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYP--SMICLTVDVDE-------LP----EFSN------------------ 91 (133)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~id~d~-------~~----~~~~------------------ 91 (133)
.+++++|+||++||+ |....|.|+++.+++. ++.++.++.+. .+ .+++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~ 99 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGE 99 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCC
Confidence 589999999999999 9999999999999985 58888886532 11 1222
Q ss_pred ----hcC--CCCcc-----------EEEEE-eCCeEEEEeeCC-CHHHHHHH
Q 045454 92 ----SWG--VTATP-----------TFFFL-KDGRQIDKLIGS-NKLELQRK 124 (133)
Q Consensus 92 ----~~~--v~~~P-----------~~~~~-~~g~~~~~~~g~-~~~~l~~~ 124 (133)
.|+ +..+| +.+++ ++|+++.++.|. +.+++++.
T Consensus 100 ~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 100 NAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 122 23456 45555 999999999999 77777653
No 115
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.30 E-value=3.1e-11 Score=67.55 Aligned_cols=68 Identities=19% Similarity=0.420 Sum_probs=53.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChh----hHhhcCCCCccEEEEEeCCeEEEEeeCCCHHHHHH
Q 045454 48 VANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPE----FSNSWGVTATPTFFFLKDGRQIDKLIGSNKLELQR 123 (133)
Q Consensus 48 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~----~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~ 123 (133)
+..|+++||++|+.+.+.|.+ .++.+..+|+++++. +.+.+++.++|++++. |+. +.|.+.+.|.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~~~~~i~~ 71 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGFDPEKLDQ 71 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeCCHHHHHH
Confidence 467999999999999988865 367788889987765 4566899999999874 654 66777777777
Q ss_pred HH
Q 045454 124 KT 125 (133)
Q Consensus 124 ~~ 125 (133)
++
T Consensus 72 ~i 73 (74)
T TIGR02196 72 LL 73 (74)
T ss_pred Hh
Confidence 65
No 116
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.29 E-value=1.4e-11 Score=79.93 Aligned_cols=94 Identities=17% Similarity=0.259 Sum_probs=87.8
Q ss_pred ccCcCeEEeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCc
Q 045454 19 FASKNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTAT 98 (133)
Q Consensus 19 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~ 98 (133)
-.++.+..+.++.+|-+... .+.-+|++||.+.-..|+-+...|+.+++.+.+..|+.+|+...|-++.+++|+-+
T Consensus 63 ~GhG~y~ev~~Ekdf~~~~~----kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~IkVL 138 (211)
T KOG1672|consen 63 KGHGEYEEVASEKDFFEEVK----KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIKVL 138 (211)
T ss_pred cCCceEEEeccHHHHHHHhh----cCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeeeeEe
Confidence 45788999999999988874 57788899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeCCeEEEEeeCC
Q 045454 99 PTFFFLKDGRQIDKLIGS 116 (133)
Q Consensus 99 P~~~~~~~g~~~~~~~g~ 116 (133)
|++.+|++|+.+.+++|.
T Consensus 139 P~v~l~k~g~~~D~iVGF 156 (211)
T KOG1672|consen 139 PTVALFKNGKTVDYVVGF 156 (211)
T ss_pred eeEEEEEcCEEEEEEeeH
Confidence 999999999999999986
No 117
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=2.3e-10 Score=72.00 Aligned_cols=93 Identities=20% Similarity=0.330 Sum_probs=75.7
Q ss_pred HhhhhhCCcEEEEEEecCCChhhhhhhHHHH---HHHhhCC-CeEEEEEeCCC----------------ChhhHhhcCCC
Q 045454 37 VSESIKDGKIVVANFSAQWCSPCKKIAPVYI---QLADKYP-SMICLTVDVDE----------------LPEFSNSWGVT 96 (133)
Q Consensus 37 ~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~---~~~~~~~-~v~~~~id~d~----------------~~~~~~~~~v~ 96 (133)
...+..+++..+++|.++.|++|.++...+. ++.+.+. .+.++.+++.. ..++++.|+++
T Consensus 35 ~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vr 114 (182)
T COG2143 35 NKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVR 114 (182)
T ss_pred HHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccc
Confidence 3444578999999999999999999988884 4555554 48888888752 24789999999
Q ss_pred CccEEEEE-eCCeEEEEeeCC-CHHHHHHHHHHHH
Q 045454 97 ATPTFFFL-KDGRQIDKLIGS-NKLELQRKTAAVS 129 (133)
Q Consensus 97 ~~P~~~~~-~~g~~~~~~~g~-~~~~l~~~~~~~~ 129 (133)
++|+++++ +.|+.+....|. +++++...++-+.
T Consensus 115 stPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa 149 (182)
T COG2143 115 STPTFVFFDKTGKTILELPGYMPPEQFLAVLKYVA 149 (182)
T ss_pred cCceEEEEcCCCCEEEecCCCCCHHHHHHHHHHHH
Confidence 99999999 789999999999 9888887766543
No 118
>PF13728 TraF: F plasmid transfer operon protein
Probab=99.24 E-value=2.7e-10 Score=76.77 Aligned_cols=81 Identities=27% Similarity=0.415 Sum_probs=68.1
Q ss_pred CCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCC-----------ChhhHhhcCCCCccEEEEE-eCC-eE
Q 045454 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDE-----------LPEFSNSWGVTATPTFFFL-KDG-RQ 109 (133)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~-----------~~~~~~~~~v~~~P~~~~~-~~g-~~ 109 (133)
.++..+++||.+.|++|+.+.|.+..++++| ++.++.|+.|. +.++.+++++..+|+++++ .++ +.
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~ 197 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKW 197 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeE
Confidence 5889999999999999999999999999999 88888888873 4678999999999999988 444 45
Q ss_pred EEEeeCC-CHHHHHHH
Q 045454 110 IDKLIGS-NKLELQRK 124 (133)
Q Consensus 110 ~~~~~g~-~~~~l~~~ 124 (133)
...-.|. +..+|.+.
T Consensus 198 ~pv~~G~~s~~~L~~r 213 (215)
T PF13728_consen 198 YPVSQGFMSLDELEDR 213 (215)
T ss_pred EEEeeecCCHHHHHHh
Confidence 5555677 88877654
No 119
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.24 E-value=1.2e-10 Score=73.23 Aligned_cols=83 Identities=20% Similarity=0.282 Sum_probs=66.8
Q ss_pred CCcEEEEEEe-cCCChhhhhhhHHHHHHHhhCC--CeEEEEEeCCC---------------------ChhhHhhcCCCCc
Q 045454 43 DGKIVVANFS-AQWCSPCKKIAPVYIQLADKYP--SMICLTVDVDE---------------------LPEFSNSWGVTAT 98 (133)
Q Consensus 43 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~id~d~---------------------~~~~~~~~~v~~~ 98 (133)
.+++++|+|| +.||+.|....+.+.++..++. ++.++.|..|. ...+.+.|++...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 4789999999 5899999999999999888773 57788876643 3457888888887
Q ss_pred ---------cEEEEE-eCCeEEEEeeCC-CHHHHHHHH
Q 045454 99 ---------PTFFFL-KDGRQIDKLIGS-NKLELQRKT 125 (133)
Q Consensus 99 ---------P~~~~~-~~g~~~~~~~g~-~~~~l~~~~ 125 (133)
|+++++ ++|+++..+.|. ....+.+.+
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred cccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 888888 789999999999 666666543
No 120
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.23 E-value=9.3e-11 Score=70.44 Aligned_cols=85 Identities=36% Similarity=0.776 Sum_probs=70.5
Q ss_pred CcEEEEEEecCCChhhhhhhHHHHHHHhhCCC-eEEEEEeCC-CChhhHhhcC--CCCccEEEEEeCCeEEEEeeC--C-
Q 045454 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKYPS-MICLTVDVD-ELPEFSNSWG--VTATPTFFFLKDGRQIDKLIG--S- 116 (133)
Q Consensus 44 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~id~d-~~~~~~~~~~--v~~~P~~~~~~~g~~~~~~~g--~- 116 (133)
++++++.||++||++|+...|.+.++++.+.+ +.+..++.. ..+.+...|+ +..+|+++++.+|..+....+ .
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 111 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVL 111 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcccC
Confidence 78999999999999999999999999999974 899999997 8899999999 999999998877776655555 3
Q ss_pred CHHHHHHHHHHH
Q 045454 117 NKLELQRKTAAV 128 (133)
Q Consensus 117 ~~~~l~~~~~~~ 128 (133)
....+......+
T Consensus 112 ~~~~~~~~~~~~ 123 (127)
T COG0526 112 PKEALIDALGEL 123 (127)
T ss_pred CHHHHHHHhcch
Confidence 555555544443
No 121
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.21 E-value=5.9e-11 Score=75.14 Aligned_cols=71 Identities=27% Similarity=0.606 Sum_probs=57.6
Q ss_pred hCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC----CeEEEEEeCCCC-------------------------hhhHhh
Q 045454 42 KDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP----SMICLTVDVDEL-------------------------PEFSNS 92 (133)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~id~d~~-------------------------~~~~~~ 92 (133)
..++++.++|.|.||++|+.|.|.|.++.++.. .+.++.++.|.. .++.++
T Consensus 31 l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~k 110 (157)
T KOG2501|consen 31 LQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEK 110 (157)
T ss_pred hCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHh
Confidence 467999999999999999999999999877663 366677776643 247888
Q ss_pred cCCCCccEEEEE-eCCeEEEE
Q 045454 93 WGVTATPTFFFL-KDGRQIDK 112 (133)
Q Consensus 93 ~~v~~~P~~~~~-~~g~~~~~ 112 (133)
|++.++|++.++ .+|..+..
T Consensus 111 y~v~~iP~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 111 YEVKGIPALVILKPDGTVVTE 131 (157)
T ss_pred cccCcCceeEEecCCCCEehH
Confidence 999999999988 77877653
No 122
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.20 E-value=1.5e-10 Score=76.23 Aligned_cols=88 Identities=16% Similarity=0.244 Sum_probs=64.3
Q ss_pred CCcE-EEEEEecCCChhhhhhhHHHHHHHhhCC--CeEEEEEeCCC-------C-hh---h-Hhh---------------
Q 045454 43 DGKI-VVANFSAQWCSPCKKIAPVYIQLADKYP--SMICLTVDVDE-------L-PE---F-SNS--------------- 92 (133)
Q Consensus 43 ~~~~-~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~id~d~-------~-~~---~-~~~--------------- 92 (133)
.+++ +++.+||+||++|....|.|+++.++++ ++.++.++++. . .+ . .++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g 118 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNG 118 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCC
Confidence 5664 4566799999999999999999999885 58888887531 0 00 0 011
Q ss_pred ---------------------cCCCCccE----EEEEeCCeEEEEeeCC-CHHHHHHHHHHHHH
Q 045454 93 ---------------------WGVTATPT----FFFLKDGRQIDKLIGS-NKLELQRKTAAVSK 130 (133)
Q Consensus 93 ---------------------~~v~~~P~----~~~~~~g~~~~~~~g~-~~~~l~~~~~~~~~ 130 (133)
+++.++|+ +++.++|+++.++.|. +.+.+.+.|.++++
T Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 119 ENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred CCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 13447794 4444999999999999 88888888887764
No 123
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.20 E-value=2.7e-10 Score=71.97 Aligned_cols=83 Identities=18% Similarity=0.308 Sum_probs=65.1
Q ss_pred CCcEEEEEEecCC-ChhhhhhhHHHHHHHhhCCCeEEEEEeCCCC-----------------------hhhHhhcCCCC-
Q 045454 43 DGKIVVANFSAQW-CSPCKKIAPVYIQLADKYPSMICLTVDVDEL-----------------------PEFSNSWGVTA- 97 (133)
Q Consensus 43 ~~~~~lv~f~~~~-C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~-----------------------~~~~~~~~v~~- 97 (133)
.+++++|+||+.| |++|....+.|.++.++++++.++.|+.|.. ..+.+.|++..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~ 104 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIK 104 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCeec
Confidence 5789999999998 6999999999999999888888888887531 34566777653
Q ss_pred -----ccEEEEE-eCCeEEEEeeCC---CHHHHHHHH
Q 045454 98 -----TPTFFFL-KDGRQIDKLIGS---NKLELQRKT 125 (133)
Q Consensus 98 -----~P~~~~~-~~g~~~~~~~g~---~~~~l~~~~ 125 (133)
.|+.+++ ++|+++....|. ...++++.+
T Consensus 105 ~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 105 DLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred cCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 6887777 799999998865 445555544
No 124
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.18 E-value=4.5e-10 Score=72.98 Aligned_cols=85 Identities=20% Similarity=0.284 Sum_probs=65.7
Q ss_pred CCcEEEEEEecCC-ChhhhhhhHHHHHHHhhCCCeEEEEEeCCC-----------------------ChhhHhhcCCCCc
Q 045454 43 DGKIVVANFSAQW-CSPCKKIAPVYIQLADKYPSMICLTVDVDE-----------------------LPEFSNSWGVTAT 98 (133)
Q Consensus 43 ~~~~~lv~f~~~~-C~~C~~~~~~l~~~~~~~~~v~~~~id~d~-----------------------~~~~~~~~~v~~~ 98 (133)
.+++++|+||++| |++|....+.|.++.+++.++.++.+..|. ...+.+.||+...
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~ 122 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAIA 122 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCeec
Confidence 5789999999999 999999999999999888778888887652 2256788888877
Q ss_pred c---------EEEEE-eCCeEEEEeeCC---CHHHHHHHHHH
Q 045454 99 P---------TFFFL-KDGRQIDKLIGS---NKLELQRKTAA 127 (133)
Q Consensus 99 P---------~~~~~-~~g~~~~~~~g~---~~~~l~~~~~~ 127 (133)
| +.+++ ++|+++..+.+. ....+++.++.
T Consensus 123 ~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~ 164 (167)
T PRK00522 123 EGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAA 164 (167)
T ss_pred ccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHH
Confidence 7 77777 799999888643 44445554443
No 125
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.16 E-value=2.6e-10 Score=70.13 Aligned_cols=69 Identities=29% Similarity=0.575 Sum_probs=58.9
Q ss_pred CCcEEEEEEecC-CChhhhhhhHHHHHHHhhCC--CeEEEEEeCCC---------------------ChhhHhhcCCC--
Q 045454 43 DGKIVVANFSAQ-WCSPCKKIAPVYIQLADKYP--SMICLTVDVDE---------------------LPEFSNSWGVT-- 96 (133)
Q Consensus 43 ~~~~~lv~f~~~-~C~~C~~~~~~l~~~~~~~~--~v~~~~id~d~---------------------~~~~~~~~~v~-- 96 (133)
.+++++|.||++ ||+.|....+.|.++..+++ ++.++.+..+. ...+.+.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 679999999999 99999999999999998875 68998888754 34578889988
Q ss_pred ----CccEEEEE-eCCeEEE
Q 045454 97 ----ATPTFFFL-KDGRQID 111 (133)
Q Consensus 97 ----~~P~~~~~-~~g~~~~ 111 (133)
.+|+++++ ++|++++
T Consensus 104 ~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp TTSEESEEEEEEETTSBEEE
T ss_pred cCCceEeEEEEECCCCEEEe
Confidence 89998888 7787765
No 126
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.14 E-value=4.6e-10 Score=63.44 Aligned_cols=70 Identities=19% Similarity=0.375 Sum_probs=50.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhc-----CCCCccEEEEEeCCeEEEEeeCCCHHHHH
Q 045454 48 VANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSW-----GVTATPTFFFLKDGRQIDKLIGSNKLELQ 122 (133)
Q Consensus 48 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~-----~v~~~P~~~~~~~g~~~~~~~g~~~~~l~ 122 (133)
+..||++||++|+.+++.|.++ ++.+..+|+++++.....+ +..++|++ ++.+|+.+ ..++..++.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-----~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l---~~~~~~~~~ 72 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-----GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFL---TNPSAAQVK 72 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEe---cCCCHHHHH
Confidence 5689999999999999998776 3445568888776655553 88999997 46677543 345666666
Q ss_pred HHHH
Q 045454 123 RKTA 126 (133)
Q Consensus 123 ~~~~ 126 (133)
+.+.
T Consensus 73 ~~l~ 76 (77)
T TIGR02200 73 AKLQ 76 (77)
T ss_pred HHhh
Confidence 5543
No 127
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=99.14 E-value=1.2e-09 Score=66.79 Aligned_cols=81 Identities=23% Similarity=0.408 Sum_probs=54.1
Q ss_pred eechhhHHHHHhhhhhCCcEEEEEEecC-------CChhhhhhhHHHHHHHhhCC-CeEEEEEeCCC-------ChhhHh
Q 045454 27 ITTMVSWEAKVSESIKDGKIVVANFSAQ-------WCSPCKKIAPVYIQLADKYP-SMICLTVDVDE-------LPEFSN 91 (133)
Q Consensus 27 i~~~~~~~~~~~~~~~~~~~~lv~f~~~-------~C~~C~~~~~~l~~~~~~~~-~v~~~~id~d~-------~~~~~~ 91 (133)
+...++|.+.++....++++++|+|+++ |||+|.++.|.+++.....+ +..++.+.+.. +..+-.
T Consensus 2 v~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~ 81 (119)
T PF06110_consen 2 VRGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRT 81 (119)
T ss_dssp EECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH
T ss_pred ccCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceE
Confidence 4456778888877556678888888855 99999999999998877765 58888777632 222323
Q ss_pred --hcCCCCccEEEEEeCC
Q 045454 92 --SWGVTATPTFFFLKDG 107 (133)
Q Consensus 92 --~~~v~~~P~~~~~~~g 107 (133)
.++++++||++-+..+
T Consensus 82 ~p~~~l~~IPTLi~~~~~ 99 (119)
T PF06110_consen 82 DPDLKLKGIPTLIRWETG 99 (119)
T ss_dssp --CC---SSSEEEECTSS
T ss_pred cceeeeeecceEEEECCC
Confidence 4899999999998655
No 128
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=99.10 E-value=3.5e-09 Score=72.82 Aligned_cols=87 Identities=18% Similarity=0.254 Sum_probs=71.8
Q ss_pred CCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCC-----------hhhHhhcCCCCccEEEEE-eC-CeE
Q 045454 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDEL-----------PEFSNSWGVTATPTFFFL-KD-GRQ 109 (133)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~-----------~~~~~~~~v~~~P~~~~~-~~-g~~ 109 (133)
.++..+++||...|++|+.+.|.++.++++| ++.++.|+.|.. ...++++|+..+|+++++ .+ ++.
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~y-gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEY-GISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence 5669999999999999999999999999999 777888888854 347889999999999888 44 555
Q ss_pred EEEeeCC-CHHHHHHHHHHHHH
Q 045454 110 IDKLIGS-NKLELQRKTAAVSK 130 (133)
Q Consensus 110 ~~~~~g~-~~~~l~~~~~~~~~ 130 (133)
...-.|. +..+|.+.+-.+..
T Consensus 228 ~pv~~G~iS~deL~~Ri~~v~~ 249 (256)
T TIGR02739 228 SPLAYGFISQDELKERILNVLT 249 (256)
T ss_pred EEEeeccCCHHHHHHHHHHHHh
Confidence 5555677 98998887776654
No 129
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.10 E-value=2.1e-09 Score=68.79 Aligned_cols=85 Identities=15% Similarity=0.181 Sum_probs=63.4
Q ss_pred CCcEEEEEEecC-CChhhhhhhHHHHHHHhhC--CCeEEEEEeCCC---------------------ChhhHhhcCCCCc
Q 045454 43 DGKIVVANFSAQ-WCSPCKKIAPVYIQLADKY--PSMICLTVDVDE---------------------LPEFSNSWGVTAT 98 (133)
Q Consensus 43 ~~~~~lv~f~~~-~C~~C~~~~~~l~~~~~~~--~~v~~~~id~d~---------------------~~~~~~~~~v~~~ 98 (133)
.+++++|.||+. ||+.|....+.+.++.+.+ .++.++.|..|. ...+.++|++...
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 108 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE 108 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence 578999999976 7889999999999888877 358888887653 3356788887654
Q ss_pred ------------cEEEEE-eCCeEEEEeeCC-CHHHHHHHHHH
Q 045454 99 ------------PTFFFL-KDGRQIDKLIGS-NKLELQRKTAA 127 (133)
Q Consensus 99 ------------P~~~~~-~~g~~~~~~~g~-~~~~l~~~~~~ 127 (133)
|+.+++ ++|+++..+.|. ..+.+.+.++.
T Consensus 109 ~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~~~~~ 151 (154)
T PRK09437 109 KKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDVVLDY 151 (154)
T ss_pred cccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHHHHHH
Confidence 565666 799999999998 44554444433
No 130
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=99.09 E-value=8.5e-10 Score=59.22 Aligned_cols=60 Identities=33% Similarity=0.607 Sum_probs=51.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHh---hcCCCCccEEEEEeCC
Q 045454 48 VANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSN---SWGVTATPTFFFLKDG 107 (133)
Q Consensus 48 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~---~~~v~~~P~~~~~~~g 107 (133)
++.||++||++|+.+.+.+.++....+++.+..++++....... .+++..+|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 47899999999999999999984445679999999998876654 7899999999999766
No 131
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.09 E-value=3.1e-09 Score=69.33 Aligned_cols=86 Identities=21% Similarity=0.251 Sum_probs=64.2
Q ss_pred CCcEEEEEEe-cCCChhhhhhhHHHHHHHhhCC--CeEEEEEeCCC----------------------------ChhhHh
Q 045454 43 DGKIVVANFS-AQWCSPCKKIAPVYIQLADKYP--SMICLTVDVDE----------------------------LPEFSN 91 (133)
Q Consensus 43 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~id~d~----------------------------~~~~~~ 91 (133)
.++++||+|| +.||+.|....+.|.++.+++. ++.++.|..|. ...+.+
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 4789999999 8999999999999999988873 57777776543 123566
Q ss_pred hcCCC------CccEEEEE-eCCeEEEEeeCC-----CHHHHHHHHHHH
Q 045454 92 SWGVT------ATPTFFFL-KDGRQIDKLIGS-----NKLELQRKTAAV 128 (133)
Q Consensus 92 ~~~v~------~~P~~~~~-~~g~~~~~~~g~-----~~~~l~~~~~~~ 128 (133)
.|++. ..|+++++ ++|+++..+.+. +.+++.+.++.+
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 77775 56788888 799999988654 345555555544
No 132
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=99.06 E-value=3.5e-09 Score=60.07 Aligned_cols=70 Identities=19% Similarity=0.470 Sum_probs=56.3
Q ss_pred EecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCccEEEEEeCCeEEEEeeC-C-CHHHHHHHHH
Q 045454 51 FSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFLKDGRQIDKLIG-S-NKLELQRKTA 126 (133)
Q Consensus 51 f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g-~-~~~~l~~~~~ 126 (133)
+++++|++|..+...++++...+ ++.+-.++..+.+++ .+||+.++|+++ -+|+.+ +.| . +.++|.++++
T Consensus 5 v~~~~C~~C~~~~~~~~~~~~~~-~i~~ei~~~~~~~~~-~~ygv~~vPalv--Ing~~~--~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 5 VFSPGCPYCPELVQLLKEAAEEL-GIEVEIIDIEDFEEI-EKYGVMSVPALV--INGKVV--FVGRVPSKEELKELLE 76 (76)
T ss_dssp EECSSCTTHHHHHHHHHHHHHHT-TEEEEEEETTTHHHH-HHTT-SSSSEEE--ETTEEE--EESS--HHHHHHHHHH
T ss_pred EeCCCCCCcHHHHHHHHHHHHhc-CCeEEEEEccCHHHH-HHcCCCCCCEEE--ECCEEE--EEecCCCHHHHHHHhC
Confidence 36888999999999999999998 577777888666666 999999999996 468874 668 4 8888887764
No 133
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.04 E-value=3.8e-09 Score=66.87 Aligned_cols=72 Identities=17% Similarity=0.308 Sum_probs=54.1
Q ss_pred CcEEEEEEecCCChhhhhhhHHHHHHHhhC--CCeEEEEEeCCC---------------------ChhhHhhcCCC----
Q 045454 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKY--PSMICLTVDVDE---------------------LPEFSNSWGVT---- 96 (133)
Q Consensus 44 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~--~~v~~~~id~d~---------------------~~~~~~~~~v~---- 96 (133)
+..+|+.|+++||+.|+...+.|.++.+++ .++.++.|..+. +..+.+.|++.
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~g~~~~~~ 103 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLPFPVYADPDRKLYRALGLVRSLP 103 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCCCeEEECCchhHHHHcCceecCc
Confidence 344555556999999999999999998887 468888887653 34567777773
Q ss_pred -------------------------CccEEEEE-eCCeEEEEeeC
Q 045454 97 -------------------------ATPTFFFL-KDGRQIDKLIG 115 (133)
Q Consensus 97 -------------------------~~P~~~~~-~~g~~~~~~~g 115 (133)
..|..+++ ++|++...+.|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 104 WSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred HHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 68888877 67887776655
No 134
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=99.03 E-value=1.5e-08 Score=62.00 Aligned_cols=97 Identities=13% Similarity=0.233 Sum_probs=74.9
Q ss_pred hHHHHHhhhhhCCcEEEEEEecC----CChhhhhh--hHHHHHHHhhCCCeEEEEEeCCC--ChhhHhhcCCCCccEEEE
Q 045454 32 SWEAKVSESIKDGKIVVANFSAQ----WCSPCKKI--APVYIQLADKYPSMICLTVDVDE--LPEFSNSWGVTATPTFFF 103 (133)
Q Consensus 32 ~~~~~~~~~~~~~~~~lv~f~~~----~C~~C~~~--~~~l~~~~~~~~~v~~~~id~d~--~~~~~~~~~v~~~P~~~~ 103 (133)
+|.+.+..+..+.|.++|+++++ ||..|+.. .|.+.++.. .++.+...|++. ...++..++++++|++.+
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln--~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~ 82 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN--TRMLFWACSVAKPEGYRVSQALRERTYPFLAM 82 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH--cCEEEEEEecCChHHHHHHHHhCCCCCCEEEE
Confidence 57778887778999999999999 88888655 334444432 357778888864 346788899999999888
Q ss_pred E--eC--CeEEEEeeCC-CHHHHHHHHHHHHH
Q 045454 104 L--KD--GRQIDKLIGS-NKLELQRKTAAVSK 130 (133)
Q Consensus 104 ~--~~--g~~~~~~~g~-~~~~l~~~~~~~~~ 130 (133)
+ ++ .+++.+..|. +++++...+..+.+
T Consensus 83 l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 83 IMLKDNRMTIVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred EEecCCceEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 8 23 3568899999 99999999888764
No 135
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=99.02 E-value=1.1e-08 Score=70.01 Aligned_cols=87 Identities=18% Similarity=0.188 Sum_probs=69.8
Q ss_pred CCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCC-----------ChhhHhhcCCCCccEEEEE-eC-CeE
Q 045454 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDE-----------LPEFSNSWGVTATPTFFFL-KD-GRQ 109 (133)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~-----------~~~~~~~~~v~~~P~~~~~-~~-g~~ 109 (133)
.++..|++||.+.|++|+.+.|.++.++++| ++.++.++.|. +....+++++..+|+++++ .+ ++.
T Consensus 142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y-g~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTY-GLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred HhcceEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 4669999999999999999999999999999 76777777764 2235678999999999988 33 466
Q ss_pred EEEeeCC-CHHHHHHHHHHHHH
Q 045454 110 IDKLIGS-NKLELQRKTAAVSK 130 (133)
Q Consensus 110 ~~~~~g~-~~~~l~~~~~~~~~ 130 (133)
.-.-.|. +..+|.+.+..+..
T Consensus 221 ~pv~~G~iS~deL~~Ri~~v~t 242 (248)
T PRK13703 221 RPLSYGFITQDDLAKRFLNVST 242 (248)
T ss_pred EEEeeccCCHHHHHHHHHHHHh
Confidence 5566688 99999887776543
No 136
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.02 E-value=3.6e-09 Score=61.23 Aligned_cols=76 Identities=17% Similarity=0.286 Sum_probs=56.9
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCCh----hhHhhcC--CCCccEEEEEeCCeEEEEeeCCCHHH
Q 045454 47 VVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELP----EFSNSWG--VTATPTFFFLKDGRQIDKLIGSNKLE 120 (133)
Q Consensus 47 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~----~~~~~~~--v~~~P~~~~~~~g~~~~~~~g~~~~~ 120 (133)
-+++|+.+||++|+++...|+++..++.++.+..+|+++.+ ++.+.++ +..+|+++ .+|+.+. ...+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~ig-----g~~~ 74 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHIG-----GCTD 74 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEEc-----CHHH
Confidence 36789999999999999999999988778888889988653 4554455 47899987 5676643 3356
Q ss_pred HHHHHHHHH
Q 045454 121 LQRKTAAVS 129 (133)
Q Consensus 121 l~~~~~~~~ 129 (133)
+.+++++.+
T Consensus 75 ~~~~~~~~~ 83 (85)
T PRK11200 75 FEAYVKENL 83 (85)
T ss_pred HHHHHHHhc
Confidence 666665543
No 137
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.01 E-value=4.2e-09 Score=69.64 Aligned_cols=73 Identities=19% Similarity=0.197 Sum_probs=57.3
Q ss_pred CCcEEEEEEe-cCCChhhhhhhHHHHHHHhhCC--CeEEEEEeCCC-------------------------ChhhHhhcC
Q 045454 43 DGKIVVANFS-AQWCSPCKKIAPVYIQLADKYP--SMICLTVDVDE-------------------------LPEFSNSWG 94 (133)
Q Consensus 43 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~id~d~-------------------------~~~~~~~~~ 94 (133)
.++++||+|| +.||+.|....+.|.++.+++. ++.++.|..|. ...+.+.|+
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 5789999999 9999999999999998887773 57777776553 234677888
Q ss_pred CC------CccEEEEE-eCCeEEEEeeC
Q 045454 95 VT------ATPTFFFL-KDGRQIDKLIG 115 (133)
Q Consensus 95 v~------~~P~~~~~-~~g~~~~~~~g 115 (133)
+. ..|+.+++ ++|++...+.+
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~ 137 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEIT 137 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEe
Confidence 76 46887777 79999887654
No 138
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=99.01 E-value=3.8e-09 Score=67.81 Aligned_cols=96 Identities=18% Similarity=0.298 Sum_probs=59.4
Q ss_pred HHHhhhhhCCcEEEEEEecCCChhhhhhhHHH---HHHHhhCC-CeEEEEEeCCCChhhHhhc--------CCCCccEEE
Q 045454 35 AKVSESIKDGKIVVANFSAQWCSPCKKIAPVY---IQLADKYP-SMICLTVDVDELPEFSNSW--------GVTATPTFF 102 (133)
Q Consensus 35 ~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~-~v~~~~id~d~~~~~~~~~--------~v~~~P~~~ 102 (133)
+.+.++.+++|+++|.++.+||..|+.+...- .++++.+. ++.-+.+|.++.|++-..| +..++|+.+
T Consensus 28 ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~v 107 (163)
T PF03190_consen 28 EALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTV 107 (163)
T ss_dssp HHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEE
T ss_pred HHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceE
Confidence 44555557899999999999999999887533 24555553 4667889999999998888 788999988
Q ss_pred EE-eCCeEEEEeeCCCH------HHHHHHHHHHHH
Q 045454 103 FL-KDGRQIDKLIGSNK------LELQRKTAAVSK 130 (133)
Q Consensus 103 ~~-~~g~~~~~~~g~~~------~~l~~~~~~~~~ 130 (133)
|+ .+|+.+..-..... ..+.+.+.++.+
T Consensus 108 fltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~i~~ 142 (163)
T PF03190_consen 108 FLTPDGKPFFGGTYFPPEDRYGRPGFLQLLERIAE 142 (163)
T ss_dssp EE-TTS-EEEEESS--SS-BTTB--HHHHHHHHHH
T ss_pred EECCCCCeeeeeeecCCCCCCCCccHHHHHHHHHH
Confidence 88 88988875332222 355565555543
No 139
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.00 E-value=8.4e-09 Score=65.47 Aligned_cols=74 Identities=20% Similarity=0.290 Sum_probs=57.2
Q ss_pred CcEEEEEEe-cCCChhhhhhhHHHHHHHhhCC--CeEEEEEeCCC---------------------C--hhhHhhcCCCC
Q 045454 44 GKIVVANFS-AQWCSPCKKIAPVYIQLADKYP--SMICLTVDVDE---------------------L--PEFSNSWGVTA 97 (133)
Q Consensus 44 ~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~id~d~---------------------~--~~~~~~~~v~~ 97 (133)
+++++|.|| ++||+.|....+.+.++.++++ ++.++.|..+. . ..+.+.|++..
T Consensus 28 ~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~ 107 (149)
T cd03018 28 RKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFD 107 (149)
T ss_pred CCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCcc
Confidence 388888888 8999999999999999988874 58787776542 3 45677788773
Q ss_pred ----cc--EEEEE-eCCeEEEEeeCCC
Q 045454 98 ----TP--TFFFL-KDGRQIDKLIGSN 117 (133)
Q Consensus 98 ----~P--~~~~~-~~g~~~~~~~g~~ 117 (133)
+| +++++ ++|+++..+.|..
T Consensus 108 ~~~~~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 108 EDLGVAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred ccCCCccceEEEECCCCEEEEEEecCC
Confidence 33 66666 7999999888863
No 140
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.7e-09 Score=71.64 Aligned_cols=93 Identities=18% Similarity=0.469 Sum_probs=75.7
Q ss_pred cCeEEeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC--CeEEEEEeCCCChhhHhhcCCC---
Q 045454 22 KNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP--SMICLTVDVDELPEFSNSWGVT--- 96 (133)
Q Consensus 22 ~~~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~id~d~~~~~~~~~~v~--- 96 (133)
+.+.-.+..+.+++.+.. .....++|.|++.|.+.|+.+.|.+.++..+|. ++.|..+|+...++...+|+|.
T Consensus 124 e~ikyf~~~q~~deel~r--nk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~ 201 (265)
T KOG0914|consen 124 ETIKYFTNMQLEDEELDR--NKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSP 201 (265)
T ss_pred hheeeecchhhHHHHhcc--CCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCc
Confidence 334445555655555532 356789999999999999999999999999884 5999999999999999999764
Q ss_pred ---CccEEEEEeCCeEEEEeeCC
Q 045454 97 ---ATPTFFFLKDGRQIDKLIGS 116 (133)
Q Consensus 97 ---~~P~~~~~~~g~~~~~~~g~ 116 (133)
.+||+++|.+|+.+.+....
T Consensus 202 ~srQLPT~ilFq~gkE~~RrP~v 224 (265)
T KOG0914|consen 202 GSRQLPTYILFQKGKEVSRRPDV 224 (265)
T ss_pred ccccCCeEEEEccchhhhcCccc
Confidence 68999999999998876543
No 141
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.96 E-value=3.2e-09 Score=60.98 Aligned_cols=60 Identities=27% Similarity=0.455 Sum_probs=45.6
Q ss_pred EEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChh-----hHhhcCCCCccEEEEEeCCeEE
Q 045454 48 VANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPE-----FSNSWGVTATPTFFFLKDGRQI 110 (133)
Q Consensus 48 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~-----~~~~~~v~~~P~~~~~~~g~~~ 110 (133)
++.|+++|||+|+.+.+.|.++... +.+.++.++.+++.. +.+.+++..+|+++ .+|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~--i~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF--INGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE--ECCEEE
Confidence 4689999999999999999998722 237788888775543 55667899999985 567654
No 142
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.93 E-value=1.5e-08 Score=63.58 Aligned_cols=75 Identities=25% Similarity=0.368 Sum_probs=59.6
Q ss_pred CCcEEEEEEe-cCCChhhhhhhHHHHHHHhhC--CCeEEEEEeCCC----------------------ChhhHhhcCCCC
Q 045454 43 DGKIVVANFS-AQWCSPCKKIAPVYIQLADKY--PSMICLTVDVDE----------------------LPEFSNSWGVTA 97 (133)
Q Consensus 43 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~--~~v~~~~id~d~----------------------~~~~~~~~~v~~ 97 (133)
.+++++|+|| +.||+.|....+.|.++.+++ +++.++.|..+. ...+.+.|++..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 6899999999 789999999999999998876 457888877642 234667778776
Q ss_pred cc---------EEEEE-eCCeEEEEeeCCC
Q 045454 98 TP---------TFFFL-KDGRQIDKLIGSN 117 (133)
Q Consensus 98 ~P---------~~~~~-~~g~~~~~~~g~~ 117 (133)
.| +++++ ++|+++..+.|..
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~~ 130 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYVEVEPL 130 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEEEecCC
Confidence 65 66666 7899999998873
No 143
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.89 E-value=1.5e-08 Score=66.75 Aligned_cols=42 Identities=10% Similarity=0.167 Sum_probs=36.3
Q ss_pred hCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC--CeEEEEEeCC
Q 045454 42 KDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP--SMICLTVDVD 84 (133)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~id~d 84 (133)
..++++||.|||+||+.|. ..+.|+++.++|+ ++.++.+.++
T Consensus 23 ~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 23 YAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred hCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeecc
Confidence 4689999999999999997 5889999999985 5888888774
No 144
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.88 E-value=9.6e-10 Score=73.47 Aligned_cols=97 Identities=25% Similarity=0.436 Sum_probs=81.2
Q ss_pred CeEEeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC--CeEEEEEeCCCChhhHhhcCCCCccE
Q 045454 23 NVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP--SMICLTVDVDELPEFSNSWGVTATPT 100 (133)
Q Consensus 23 ~~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~id~d~~~~~~~~~~v~~~P~ 100 (133)
.+..+ +.+++...+ ..-+++.|+++|||.|+...+.+..++.--. ++.+..+|...++.+..+|-+...||
T Consensus 25 ~~~~~-~eenw~~~l------~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLpt 97 (248)
T KOG0913|consen 25 KLTRI-DEENWKELL------TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPT 97 (248)
T ss_pred eeEEe-cccchhhhh------chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecce
Confidence 33343 557777776 4557889999999999999999999986544 48999999999999999999999999
Q ss_pred EEEEeCCeEEEEeeCC-CHHHHHHHHHH
Q 045454 101 FFFLKDGRQIDKLIGS-NKLELQRKTAA 127 (133)
Q Consensus 101 ~~~~~~g~~~~~~~g~-~~~~l~~~~~~ 127 (133)
++=.++|.. .++.|. +..+++.++..
T Consensus 98 IYHvkDGeF-rrysgaRdk~dfisf~~~ 124 (248)
T KOG0913|consen 98 IYHVKDGEF-RRYSGARDKNDFISFEEH 124 (248)
T ss_pred EEEeecccc-ccccCcccchhHHHHHHh
Confidence 999999865 588898 99999888764
No 145
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.87 E-value=1.3e-08 Score=63.99 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=36.4
Q ss_pred CCcEEEEEEecCCChh-hhhhhHHHHHHHhhCC-----CeEEEEEeCC
Q 045454 43 DGKIVVANFSAQWCSP-CKKIAPVYIQLADKYP-----SMICLTVDVD 84 (133)
Q Consensus 43 ~~~~~lv~f~~~~C~~-C~~~~~~l~~~~~~~~-----~v~~~~id~d 84 (133)
.+++++|.||++||++ |....+.+.++.++++ ++.++.|..|
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 5789999999999998 9999999999988774 3888888764
No 146
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.9e-09 Score=71.71 Aligned_cols=100 Identities=29% Similarity=0.504 Sum_probs=84.3
Q ss_pred eEEeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCccEEEE
Q 045454 24 VHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFF 103 (133)
Q Consensus 24 ~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~P~~~~ 103 (133)
+..+.....| +. ...+..+++||++||..|+++...+..+++..+++.++.+++++.+++...+.+.++|.+.+
T Consensus 3 v~~i~~~~~f---~~---~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~vp~~~~ 76 (227)
T KOG0911|consen 3 VQFIVFQEQF---LD---QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEAVPYFVF 76 (227)
T ss_pred ceeehhHHHH---HH---hccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhcCceeee
Confidence 3445555555 22 26889999999999999999999999999988889999999999999999999999999999
Q ss_pred EeCCeEEEEeeCCCHHHHHHHHHHHH
Q 045454 104 LKDGRQIDKLIGSNKLELQRKTAAVS 129 (133)
Q Consensus 104 ~~~g~~~~~~~g~~~~~l~~~~~~~~ 129 (133)
+..|+.+.+..|.....+...+..+.
T Consensus 77 ~~~~~~v~~l~~~~~~~~~~~~~~~~ 102 (227)
T KOG0911|consen 77 FFLGEKVDRLSGADPPFLVSKVEKLA 102 (227)
T ss_pred eecchhhhhhhccCcHHHHHHHHHhh
Confidence 99999999999986666665555443
No 147
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.86 E-value=7.6e-08 Score=57.40 Aligned_cols=87 Identities=20% Similarity=0.279 Sum_probs=64.9
Q ss_pred EEeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCC-eEEEEEeCCCCh----hhHhhcCCCC-c
Q 045454 25 HLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPS-MICLTVDVDELP----EFSNSWGVTA-T 98 (133)
Q Consensus 25 ~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~id~d~~~----~~~~~~~v~~-~ 98 (133)
..+++.+++++.++.+ .+++++|+=.++.||-+..+...++++....++ +.++.+|+-+++ .++++|||+. -
T Consensus 2 ~~L~t~eql~~i~~~S--~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeS 79 (105)
T PF11009_consen 2 KPLTTEEQLEEILEES--KEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHES 79 (105)
T ss_dssp -E--SHHHHHHHHHH-----SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----S
T ss_pred CccCCHHHHHHHHHhc--ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCC
Confidence 4678889999988763 689999999999999999999999999988876 999999998775 4788999985 8
Q ss_pred cEEEEEeCCeEEEEe
Q 045454 99 PTFFFLKDGRQIDKL 113 (133)
Q Consensus 99 P~~~~~~~g~~~~~~ 113 (133)
|.++++++|+.+.-.
T Consensus 80 PQ~ili~~g~~v~~a 94 (105)
T PF11009_consen 80 PQVILIKNGKVVWHA 94 (105)
T ss_dssp SEEEEEETTEEEEEE
T ss_pred CcEEEEECCEEEEEC
Confidence 999999999998643
No 148
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.86 E-value=3.6e-08 Score=54.79 Aligned_cols=67 Identities=24% Similarity=0.307 Sum_probs=48.8
Q ss_pred EEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhc----CCCCccEEEEEeCCeEEEEeeCCCHHHHHH
Q 045454 48 VANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSW----GVTATPTFFFLKDGRQIDKLIGSNKLELQR 123 (133)
Q Consensus 48 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~----~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~ 123 (133)
++.|+++||++|+++...|.+. ++.+..++++.++...+.+ ++..+|++++ +|+ .+.|.+..+|.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~---~i~g~~~~~l~~ 71 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-----GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE---HLSGFRPDKLRA 71 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-----CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE---EEecCCHHHHHh
Confidence 4679999999999998888763 5666777887766544444 6889999975 453 456677777765
Q ss_pred H
Q 045454 124 K 124 (133)
Q Consensus 124 ~ 124 (133)
+
T Consensus 72 ~ 72 (73)
T cd02976 72 L 72 (73)
T ss_pred h
Confidence 4
No 149
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.85 E-value=7.3e-08 Score=64.49 Aligned_cols=87 Identities=17% Similarity=0.245 Sum_probs=63.7
Q ss_pred CCcEEEE-EEecCCChhhhhhhHHHHHHHhhCC--CeEEEEEeCCC---------------------------ChhhHhh
Q 045454 43 DGKIVVA-NFSAQWCSPCKKIAPVYIQLADKYP--SMICLTVDVDE---------------------------LPEFSNS 92 (133)
Q Consensus 43 ~~~~~lv-~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~id~d~---------------------------~~~~~~~ 92 (133)
.+++++| .||++||+.|....+.|.++.+++. ++.++.+..|. ...+.+.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 4666655 6899999999999999998887773 57777776552 2356777
Q ss_pred cCCC------CccEEEEE-eCCeEEEEe----e-CCCHHHHHHHHHHHH
Q 045454 93 WGVT------ATPTFFFL-KDGRQIDKL----I-GSNKLELQRKTAAVS 129 (133)
Q Consensus 93 ~~v~------~~P~~~~~-~~g~~~~~~----~-g~~~~~l~~~~~~~~ 129 (133)
||+. .+|+++++ ++|++.... . |.+.+++.+.++.+.
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 8874 58998888 788887655 2 337777777777654
No 150
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.82 E-value=7.1e-08 Score=73.43 Aligned_cols=78 Identities=17% Similarity=0.372 Sum_probs=67.6
Q ss_pred CcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCccEEEEEeCCeEEEEeeCC-CHHHHH
Q 045454 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFLKDGRQIDKLIGS-NKLELQ 122 (133)
Q Consensus 44 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~ 122 (133)
+...+-.|.+++|++|..+...+++++...+++..-.+|..+.++++++|+|.++|++++ +|+.+ +.|. +.+++.
T Consensus 476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~~--~~G~~~~~~~~ 551 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQV--YFGKKTIEEML 551 (555)
T ss_pred CCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEEE--CCEEE--EeeCCCHHHHH
Confidence 445566778999999999999999999999999999999999999999999999999995 57765 4477 888887
Q ss_pred HHH
Q 045454 123 RKT 125 (133)
Q Consensus 123 ~~~ 125 (133)
+++
T Consensus 552 ~~~ 554 (555)
T TIGR03143 552 ELI 554 (555)
T ss_pred Hhh
Confidence 765
No 151
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.81 E-value=8.9e-08 Score=63.30 Aligned_cols=86 Identities=15% Similarity=0.170 Sum_probs=65.3
Q ss_pred CCcEEEEEEe-cCCChhhhhhhHHHHHHHhhCC--CeEEEEEeCCC-------------------------ChhhHhhcC
Q 045454 43 DGKIVVANFS-AQWCSPCKKIAPVYIQLADKYP--SMICLTVDVDE-------------------------LPEFSNSWG 94 (133)
Q Consensus 43 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~id~d~-------------------------~~~~~~~~~ 94 (133)
.+++++|+|| +.||+.|....+.+.++.+++. ++.++.|..|. +..+.++||
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 5789999999 9999999999999999888873 57777777543 345778888
Q ss_pred CC----Cc--cEEEEE-eCCeEEEEeeC-----CCHHHHHHHHHHH
Q 045454 95 VT----AT--PTFFFL-KDGRQIDKLIG-----SNKLELQRKTAAV 128 (133)
Q Consensus 95 v~----~~--P~~~~~-~~g~~~~~~~g-----~~~~~l~~~~~~~ 128 (133)
+. ++ |+.+++ ++|++...+.. .+..++.+.++.+
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 73 55 888888 79998887643 2666666666544
No 152
>PRK15000 peroxidase; Provisional
Probab=98.78 E-value=1.2e-07 Score=63.31 Aligned_cols=85 Identities=19% Similarity=0.299 Sum_probs=64.8
Q ss_pred CCcEEEEEEecC-CChhhhhhhHHHHHHHhhCC--CeEEEEEeCCC----------------------------ChhhHh
Q 045454 43 DGKIVVANFSAQ-WCSPCKKIAPVYIQLADKYP--SMICLTVDVDE----------------------------LPEFSN 91 (133)
Q Consensus 43 ~~~~~lv~f~~~-~C~~C~~~~~~l~~~~~~~~--~v~~~~id~d~----------------------------~~~~~~ 91 (133)
.+++++|+||+. ||+.|....+.|.++.+++. ++.++.+..|. ...+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 578999999995 99999999999999988874 57777777652 124566
Q ss_pred hcCCC------CccEEEEE-eCCeEEEEeeCC-----CHHHHHHHHHH
Q 045454 92 SWGVT------ATPTFFFL-KDGRQIDKLIGS-----NKLELQRKTAA 127 (133)
Q Consensus 92 ~~~v~------~~P~~~~~-~~g~~~~~~~g~-----~~~~l~~~~~~ 127 (133)
.|++. .+|+.+++ ++|++.....+. +..++.+.++.
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 77876 68988888 799998877763 45555555544
No 153
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.78 E-value=5.9e-08 Score=52.36 Aligned_cols=56 Identities=32% Similarity=0.458 Sum_probs=43.0
Q ss_pred EEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhh----cCCCCccEEEEEeCCeEE
Q 045454 48 VANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNS----WGVTATPTFFFLKDGRQI 110 (133)
Q Consensus 48 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~----~~v~~~P~~~~~~~g~~~ 110 (133)
+++|+.+||++|+.++..|.+. ++.+-.+|++..++..+. .+...+|++++ +|+.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-----~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-----GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-----CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEEC
Confidence 5689999999999999999554 577778888877543333 39999999985 67653
No 154
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.78 E-value=4.1e-08 Score=56.93 Aligned_cols=73 Identities=16% Similarity=0.314 Sum_probs=53.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCCh----hhHhhcCC--CCccEEEEEeCCeEEEEeeCCCHHHH
Q 045454 48 VANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELP----EFSNSWGV--TATPTFFFLKDGRQIDKLIGSNKLEL 121 (133)
Q Consensus 48 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~----~~~~~~~v--~~~P~~~~~~~g~~~~~~~g~~~~~l 121 (133)
+++|+.+|||+|.+++..|.++..+++++.+..+|++... ++.+.++- ..+|+++ .+|+.+ | ...+|
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~~i----g-G~~dl 74 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEKHV----G-GCTDF 74 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCEEe----c-CHHHH
Confidence 6789999999999999999999877777778888887533 45666664 7899996 456553 2 23556
Q ss_pred HHHHHH
Q 045454 122 QRKTAA 127 (133)
Q Consensus 122 ~~~~~~ 127 (133)
.+++++
T Consensus 75 ~~~~~~ 80 (86)
T TIGR02183 75 EQLVKE 80 (86)
T ss_pred HHHHHh
Confidence 666554
No 155
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.77 E-value=6.3e-08 Score=66.09 Aligned_cols=81 Identities=17% Similarity=0.263 Sum_probs=60.8
Q ss_pred hCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEE--eC------------------------------------
Q 045454 42 KDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTV--DV------------------------------------ 83 (133)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~i--d~------------------------------------ 83 (133)
.+++.+++.|.-+.||+|+++.+.+.++.+. ++.+..+ ..
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHEQMKDYNAL--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHhcC--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 3567889999999999999999999887542 3333332 21
Q ss_pred ------CCChhhHhhcCCCCccEEEEEeCCeEEEEeeCC-CHHHHHHHHHHH
Q 045454 84 ------DELPEFSNSWGVTATPTFFFLKDGRQIDKLIGS-NKLELQRKTAAV 128 (133)
Q Consensus 84 ------d~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~~~~~ 128 (133)
+++..+++++|++++|+++ +.+|+.+ .|. +.++|.+++++.
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence 1134578889999999998 6688764 788 889999988864
No 156
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=1.3e-07 Score=57.04 Aligned_cols=76 Identities=26% Similarity=0.475 Sum_probs=56.9
Q ss_pred chhhHHHHHhhhhhCCcEEEEEEecC--------CChhhhhhhHHHHHHHhhCC-CeEEEEEeCCC-------ChhhHhh
Q 045454 29 TMVSWEAKVSESIKDGKIVVANFSAQ--------WCSPCKKIAPVYIQLADKYP-SMICLTVDVDE-------LPEFSNS 92 (133)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~lv~f~~~--------~C~~C~~~~~~l~~~~~~~~-~v~~~~id~d~-------~~~~~~~ 92 (133)
-.++|++.++.. .+++.+.++|+++ |||+|.++.|.+.+..+..+ ++.|+.+++-+ +..+...
T Consensus 11 g~e~~~~~~~~~-~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d 89 (128)
T KOG3425|consen 11 GYESFEETLKNV-ENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKD 89 (128)
T ss_pred hHHHHHHHHHHH-hCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccC
Confidence 456677777654 4556688888764 99999999999998887665 58999998753 3344555
Q ss_pred cCC-CCccEEEEEe
Q 045454 93 WGV-TATPTFFFLK 105 (133)
Q Consensus 93 ~~v-~~~P~~~~~~ 105 (133)
.++ .++||++-+.
T Consensus 90 ~~~lt~vPTLlrw~ 103 (128)
T KOG3425|consen 90 PGILTAVPTLLRWK 103 (128)
T ss_pred CCceeecceeeEEc
Confidence 566 8999999775
No 157
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.76 E-value=1.3e-07 Score=71.45 Aligned_cols=81 Identities=19% Similarity=0.323 Sum_probs=69.5
Q ss_pred CCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCccEEEEEeCCeEEEEeeCC-CHHHH
Q 045454 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFLKDGRQIDKLIGS-NKLEL 121 (133)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l 121 (133)
++...+..|.+++||+|..+...+++++...+++..-.+|..+++++.++|++.++|++++ +|+.+ +.|. +.+++
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~~ 190 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFL--NGEEF--GQGRMTLEEI 190 (517)
T ss_pred CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEE--CCcEE--EecCCCHHHH
Confidence 4566788999999999999999999999999999999999999999999999999999975 56543 5577 77777
Q ss_pred HHHHHH
Q 045454 122 QRKTAA 127 (133)
Q Consensus 122 ~~~~~~ 127 (133)
.+.+.+
T Consensus 191 ~~~~~~ 196 (517)
T PRK15317 191 LAKLDT 196 (517)
T ss_pred HHHHhc
Confidence 776654
No 158
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=98.69 E-value=1.3e-07 Score=62.63 Aligned_cols=105 Identities=14% Similarity=0.211 Sum_probs=87.1
Q ss_pred CcCeEEeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCccE
Q 045454 21 SKNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPT 100 (133)
Q Consensus 21 ~~~~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~P~ 100 (133)
-+.+..+++...|.+.+.+. .....++|++|-+.-+.|.++...+.-++.+||.+.|+.+-.+.... .++|....+|+
T Consensus 137 ~~~V~El~~gkqfld~idke-~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~ga-s~~F~~n~lP~ 214 (273)
T KOG3171|consen 137 YGFVYELETGKQFLDTIDKE-LKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNTGA-SDRFSLNVLPT 214 (273)
T ss_pred cceEEEeccchhHHHHHhcc-cceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeeccccc-hhhhcccCCce
Confidence 35788999999999999765 35678889999999999999999999999999999999998776543 68999999999
Q ss_pred EEEEeCCeEEEEeeCC--------CHHHHHHHHHH
Q 045454 101 FFFLKDGRQIDKLIGS--------NKLELQRKTAA 127 (133)
Q Consensus 101 ~~~~~~g~~~~~~~g~--------~~~~l~~~~~~ 127 (133)
+++|++|..+.-++.. ...++..|+++
T Consensus 215 LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e 249 (273)
T KOG3171|consen 215 LLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNE 249 (273)
T ss_pred EEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 9999999988755532 44556666654
No 159
>PHA03050 glutaredoxin; Provisional
Probab=98.67 E-value=1.1e-07 Score=57.42 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=42.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCC-Ch----hhHhhcCCCCccEEEEEeCCeEEE
Q 045454 48 VANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDE-LP----EFSNSWGVTATPTFFFLKDGRQID 111 (133)
Q Consensus 48 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~-~~----~~~~~~~v~~~P~~~~~~~g~~~~ 111 (133)
+++|.++|||+|++++..|.+.....+.+..+.++... .+ .+.+..|.+.+|+++ .+|+.+.
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~If--I~g~~iG 81 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIF--FGKTSIG 81 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEE--ECCEEEe
Confidence 55799999999999999998886555455554444311 22 244445788999996 5576653
No 160
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.67 E-value=7.4e-07 Score=51.08 Aligned_cols=72 Identities=15% Similarity=0.225 Sum_probs=55.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhH---hhcCCCCccEEEEEeCCeEEEEeeCCCHHHHHHH
Q 045454 48 VANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFS---NSWGVTATPTFFFLKDGRQIDKLIGSNKLELQRK 124 (133)
Q Consensus 48 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~---~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~~ 124 (133)
+.+|..+||++|+.++..|.+ .++.|-.+|+++.++.. ...|...+|++++ +|. .+.|.+.++|.++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~---~~~Gf~~~~l~~~ 72 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL---SWSGFRPDMINRL 72 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE---EEecCCHHHHHHH
Confidence 567899999999999999965 37788888998877533 3347789999964 443 3568899999988
Q ss_pred HHHHH
Q 045454 125 TAAVS 129 (133)
Q Consensus 125 ~~~~~ 129 (133)
.....
T Consensus 73 ~~~~~ 77 (81)
T PRK10329 73 HPAPH 77 (81)
T ss_pred HHhhh
Confidence 76654
No 161
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.66 E-value=2.1e-07 Score=52.11 Aligned_cols=66 Identities=21% Similarity=0.331 Sum_probs=50.4
Q ss_pred EEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhc---CCCCccEEEEEeCCeEEEEeeCCCHHHHHH
Q 045454 49 ANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSW---GVTATPTFFFLKDGRQIDKLIGSNKLELQR 123 (133)
Q Consensus 49 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~---~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~ 123 (133)
.+|+.++|++|+.++..|.+. ++.+-.+|+++++.....+ |...+|++++ +|+. .+.|.+.++|.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~~--~~~G~~~~~~~~ 70 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH-----GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGDL--SWSGFRPDKLKA 70 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCCc--EEeccCHHHHHh
Confidence 578899999999999999763 6777788888887665555 8889999864 4542 456778887765
No 162
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.65 E-value=6.8e-07 Score=59.85 Aligned_cols=83 Identities=18% Similarity=0.238 Sum_probs=60.2
Q ss_pred EEEEEEecCCChhhhhhhHHHHHHHhhCC--CeEEEEEeCCC---------------------------ChhhHhhcCCC
Q 045454 46 IVVANFSAQWCSPCKKIAPVYIQLADKYP--SMICLTVDVDE---------------------------LPEFSNSWGVT 96 (133)
Q Consensus 46 ~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~id~d~---------------------------~~~~~~~~~v~ 96 (133)
++|+.||++||+.|....+.|.++.+++. ++.++.+..|. ...+.+.||+.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 45558889999999999999999988873 57888877653 23467778865
Q ss_pred ----C----ccEEEEE-eCCeEEEEeeCC-----CHHHHHHHHHHH
Q 045454 97 ----A----TPTFFFL-KDGRQIDKLIGS-----NKLELQRKTAAV 128 (133)
Q Consensus 97 ----~----~P~~~~~-~~g~~~~~~~g~-----~~~~l~~~~~~~ 128 (133)
+ +|+++++ ++|++...+.+. +.+++.+.++.+
T Consensus 108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred cccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 2 3456666 789888777653 556676666654
No 163
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.63 E-value=9.5e-07 Score=61.17 Aligned_cols=86 Identities=20% Similarity=0.210 Sum_probs=63.8
Q ss_pred CCcEEEEEEe-cCCChhhhhhhHHHHHHHhhCC--CeEEEEEeCCC----------------------------ChhhHh
Q 045454 43 DGKIVVANFS-AQWCSPCKKIAPVYIQLADKYP--SMICLTVDVDE----------------------------LPEFSN 91 (133)
Q Consensus 43 ~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~id~d~----------------------------~~~~~~ 91 (133)
.++++||+|| +.||+.|....+.+.+..+++. ++.++.|..|. +..+++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 5677888887 8999999999999999888773 57777776653 234678
Q ss_pred hcCCC-----CccEEEEE-eCCeEEEEee-----CCCHHHHHHHHHHH
Q 045454 92 SWGVT-----ATPTFFFL-KDGRQIDKLI-----GSNKLELQRKTAAV 128 (133)
Q Consensus 92 ~~~v~-----~~P~~~~~-~~g~~~~~~~-----g~~~~~l~~~~~~~ 128 (133)
.||+. ..|+.+++ ++|++..... |.+.+++.+.++.+
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 88875 57988888 6899988763 22666666666544
No 164
>PRK13189 peroxiredoxin; Provisional
Probab=98.63 E-value=8.1e-07 Score=60.29 Aligned_cols=87 Identities=20% Similarity=0.320 Sum_probs=62.7
Q ss_pred CCc-EEEEEEecCCChhhhhhhHHHHHHHhhCC--CeEEEEEeCCC---------------------------ChhhHhh
Q 045454 43 DGK-IVVANFSAQWCSPCKKIAPVYIQLADKYP--SMICLTVDVDE---------------------------LPEFSNS 92 (133)
Q Consensus 43 ~~~-~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~id~d~---------------------------~~~~~~~ 92 (133)
.++ ++|+.||++||+.|....+.+.+++.++. ++.++.+.+|. ...+.++
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 456 44557789999999999999999888773 57777776653 2345777
Q ss_pred cCCC-------CccEEEEE-eCCeEEEEee-----CCCHHHHHHHHHHHH
Q 045454 93 WGVT-------ATPTFFFL-KDGRQIDKLI-----GSNKLELQRKTAAVS 129 (133)
Q Consensus 93 ~~v~-------~~P~~~~~-~~g~~~~~~~-----g~~~~~l~~~~~~~~ 129 (133)
||+. .+|+++++ ++|++..... |.+.+++.+.++.+.
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 163 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQ 163 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 8764 46888888 7898877665 336677777776553
No 165
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.62 E-value=5.1e-07 Score=60.99 Aligned_cols=86 Identities=21% Similarity=0.284 Sum_probs=63.3
Q ss_pred CCcE-EEEEEecCCChhhhhhhHHHHHHHhhC--CCeEEEEEeCCC---------------------------ChhhHhh
Q 045454 43 DGKI-VVANFSAQWCSPCKKIAPVYIQLADKY--PSMICLTVDVDE---------------------------LPEFSNS 92 (133)
Q Consensus 43 ~~~~-~lv~f~~~~C~~C~~~~~~l~~~~~~~--~~v~~~~id~d~---------------------------~~~~~~~ 92 (133)
.+++ +|+.|+++||+.|....+.+.++..++ .++.++.+.+|. +..+++.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 4555 467889999999999999999998887 368888887664 2245777
Q ss_pred cCCC-------CccEEEEE-eCCeEEEEeeC-----CCHHHHHHHHHHH
Q 045454 93 WGVT-------ATPTFFFL-KDGRQIDKLIG-----SNKLELQRKTAAV 128 (133)
Q Consensus 93 ~~v~-------~~P~~~~~-~~g~~~~~~~g-----~~~~~l~~~~~~~ 128 (133)
||+. .+|+++++ ++|++...+.. .+.+++.+.++.+
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 7763 57988888 78988876542 2566666666554
No 166
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.61 E-value=1e-07 Score=56.70 Aligned_cols=57 Identities=23% Similarity=0.393 Sum_probs=38.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChh---h----HhhcCCCCccEEEEEeCCeEEE
Q 045454 48 VANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPE---F----SNSWGVTATPTFFFLKDGRQID 111 (133)
Q Consensus 48 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~---~----~~~~~v~~~P~~~~~~~g~~~~ 111 (133)
++.|..+|||+|+++...|.+. ++.+..+|+|+.++ + .+..|...+|.++ .+|+.+.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~-----~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf--i~g~~iG 73 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL-----GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVF--VGGKLVG 73 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEE--ECCEEEc
Confidence 4469999999999999988776 34344566655433 2 2333678999985 5676553
No 167
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.60 E-value=7.9e-07 Score=67.23 Aligned_cols=81 Identities=19% Similarity=0.368 Sum_probs=69.2
Q ss_pred CCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCccEEEEEeCCeEEEEeeCC-CHHHH
Q 045454 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFLKDGRQIDKLIGS-NKLEL 121 (133)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l 121 (133)
++...+..|.++.||+|..+...+++++...+++..-.+|..+.+++.++|++.++|++++ +|+.+ +.|. +..++
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~~ 191 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFL--NGEEF--HNGRMDLAEL 191 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEE--CCcEE--EecCCCHHHH
Confidence 4567788999999999999999999999999999888899999999999999999999985 56543 5577 77777
Q ss_pred HHHHHH
Q 045454 122 QRKTAA 127 (133)
Q Consensus 122 ~~~~~~ 127 (133)
.+.+.+
T Consensus 192 ~~~l~~ 197 (515)
T TIGR03140 192 LEKLEE 197 (515)
T ss_pred HHHHhh
Confidence 666654
No 168
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.60 E-value=7.4e-07 Score=59.50 Aligned_cols=73 Identities=19% Similarity=0.298 Sum_probs=56.4
Q ss_pred CCcEEEEEEec-CCChhhhhhhHHHHHHHhhCC--CeEEEEEeCCCC----------------------------hhhHh
Q 045454 43 DGKIVVANFSA-QWCSPCKKIAPVYIQLADKYP--SMICLTVDVDEL----------------------------PEFSN 91 (133)
Q Consensus 43 ~~~~~lv~f~~-~~C~~C~~~~~~l~~~~~~~~--~v~~~~id~d~~----------------------------~~~~~ 91 (133)
.+++++|+||. .||+.|....+.+.++.+++. ++.++.|+.|.. .++.+
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 57899999994 889999999999999988885 688888876532 24667
Q ss_pred hcCCC------CccEEEEE-eCCeEEEEeeC
Q 045454 92 SWGVT------ATPTFFFL-KDGRQIDKLIG 115 (133)
Q Consensus 92 ~~~v~------~~P~~~~~-~~g~~~~~~~g 115 (133)
.||+. .+|+.+++ ++|++.....+
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~ 145 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVN 145 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEEEEec
Confidence 77874 36887777 78988887665
No 169
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.59 E-value=3.4e-07 Score=52.27 Aligned_cols=58 Identities=24% Similarity=0.398 Sum_probs=43.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCCh-----hhHhhcCCCCccEEEEEeCCeEE
Q 045454 48 VANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELP-----EFSNSWGVTATPTFFFLKDGRQI 110 (133)
Q Consensus 48 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~-----~~~~~~~v~~~P~~~~~~~g~~~ 110 (133)
++.|+++|||+|+.+.+.|.++.. .+.++.++.+.+. .+.+.+|..++|+++ .+|+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~--~~g~~i 64 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV---KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVF--IGGKFI 64 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC---CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEE--ECCEEE
Confidence 467999999999999999999865 4566677776552 344556889999974 556553
No 170
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.54 E-value=1.4e-06 Score=58.80 Aligned_cols=86 Identities=15% Similarity=0.239 Sum_probs=61.7
Q ss_pred CCcEEEE-EEecCCChhhhhhhHHHHHHHhhC--CCeEEEEEeCCC---------------------------ChhhHhh
Q 045454 43 DGKIVVA-NFSAQWCSPCKKIAPVYIQLADKY--PSMICLTVDVDE---------------------------LPEFSNS 92 (133)
Q Consensus 43 ~~~~~lv-~f~~~~C~~C~~~~~~l~~~~~~~--~~v~~~~id~d~---------------------------~~~~~~~ 92 (133)
.+++++| .|+++||+.|....+.|.+++.++ .++.++.+.+|. +..+.++
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 4565554 788999999999999999998887 367788777653 2345667
Q ss_pred cCCC-------CccEEEEE-eCCeEEEEeeC-----CCHHHHHHHHHHH
Q 045454 93 WGVT-------ATPTFFFL-KDGRQIDKLIG-----SNKLELQRKTAAV 128 (133)
Q Consensus 93 ~~v~-------~~P~~~~~-~~g~~~~~~~g-----~~~~~l~~~~~~~ 128 (133)
||+. ..|+++++ ++|++...+.+ .+.+++.+.++.+
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 7753 36877777 78988886543 3566666666554
No 171
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.54 E-value=7.7e-07 Score=56.38 Aligned_cols=39 Identities=26% Similarity=0.509 Sum_probs=32.5
Q ss_pred hCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEE
Q 045454 42 KDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLT 80 (133)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~ 80 (133)
.+.++.+++|+.++||+|+.+.+.+.++...++++.+..
T Consensus 3 ~~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~ 41 (154)
T cd03023 3 PNGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVF 41 (154)
T ss_pred CCCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEE
Confidence 357899999999999999999999999887776654443
No 172
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.53 E-value=5.5e-07 Score=51.32 Aligned_cols=60 Identities=18% Similarity=0.242 Sum_probs=43.5
Q ss_pred CcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCC---hhhHhhcCCCCccEEEEEeCCeEE
Q 045454 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDEL---PEFSNSWGVTATPTFFFLKDGRQI 110 (133)
Q Consensus 44 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~---~~~~~~~~v~~~P~~~~~~~g~~~ 110 (133)
++.-+++|+.+||++|++++..|.+. ++.+..+|+++. ..+.+..+...+|.++ .+|+.+
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~--i~g~~i 68 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVF--IGGKLI 68 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEE--ECCEEE
Confidence 33445679999999999999999754 555666777655 3445556889999996 467654
No 173
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=98.53 E-value=7.6e-07 Score=61.50 Aligned_cols=82 Identities=20% Similarity=0.379 Sum_probs=59.0
Q ss_pred CCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeC---------------------------------------
Q 045454 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDV--------------------------------------- 83 (133)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~--------------------------------------- 83 (133)
+.+.+++.|.-+.||+|+++.+.+..+.+. .++.+..+..
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS-GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc-CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 567888999999999999999998876554 2344444431
Q ss_pred -----------CCChhhHhhcCCCCccEEEEEe-CCeEEEEeeCC-CHHHHHHHHH
Q 045454 84 -----------DELPEFSNSWGVTATPTFFFLK-DGRQIDKLIGS-NKLELQRKTA 126 (133)
Q Consensus 84 -----------d~~~~~~~~~~v~~~P~~~~~~-~g~~~~~~~g~-~~~~l~~~~~ 126 (133)
+++..+.+++|++++|++++-. +| .+..+.|. +.++|.+.+.
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G-~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDG-TLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC-CEEEecCCCCHHHHHHHhC
Confidence 0012367788999999999874 45 44467788 8888887764
No 174
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.53 E-value=4.4e-07 Score=60.42 Aligned_cols=75 Identities=25% Similarity=0.386 Sum_probs=53.6
Q ss_pred CCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEE--eC-------------------------------------
Q 045454 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTV--DV------------------------------------- 83 (133)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~i--d~------------------------------------- 83 (133)
+.+..+++|+.+.||+|+++.+.+.+ ...++.+..+ ..
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~---~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~ 152 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP---NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA 152 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh---ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence 46899999999999999999999876 2223333222 21
Q ss_pred ------CCChhhHhhcCCCCccEEEEEeCCeEEEEeeCC-CHHHHHHH
Q 045454 84 ------DELPEFSNSWGVTATPTFFFLKDGRQIDKLIGS-NKLELQRK 124 (133)
Q Consensus 84 ------d~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~ 124 (133)
+++..+++++|++++|+++ +.+|+. +.|. +.++|.++
T Consensus 153 ~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~ 196 (197)
T cd03020 153 SCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEAL 196 (197)
T ss_pred ccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhh
Confidence 1123578889999999997 777866 4677 77777665
No 175
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.51 E-value=7.8e-06 Score=53.38 Aligned_cols=99 Identities=15% Similarity=0.212 Sum_probs=75.7
Q ss_pred EEeechhhHHHHHhhhhhCCcE-EEEEEecCCChhhhhhhHHHHHHHhhCCC-eEEEEEeCCCChhhHhhcCCC--CccE
Q 045454 25 HLITTMVSWEAKVSESIKDGKI-VVANFSAQWCSPCKKIAPVYIQLADKYPS-MICLTVDVDELPEFSNSWGVT--ATPT 100 (133)
Q Consensus 25 ~~i~~~~~~~~~~~~~~~~~~~-~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~id~d~~~~~~~~~~v~--~~P~ 100 (133)
....+.+++.... ..+.+ +++.|..........+...+..+++.+.+ +.|+.+|.+..+.+++.+|+. .+|+
T Consensus 79 v~~~t~~n~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~ 154 (184)
T PF13848_consen 79 VPELTPENFEKLF----SSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPA 154 (184)
T ss_dssp CEEESTTHHHHHH----STSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSE
T ss_pred ccccchhhHHHHh----cCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCE
Confidence 3444556666665 34544 77778777788889999999999999876 999999999999999999998 8999
Q ss_pred EEEEe--CCeEEEEeeCC-CHHHHHHHHHH
Q 045454 101 FFFLK--DGRQIDKLIGS-NKLELQRKTAA 127 (133)
Q Consensus 101 ~~~~~--~g~~~~~~~g~-~~~~l~~~~~~ 127 (133)
++++. .++.-....+. +.+.+.+|++.
T Consensus 155 ~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 155 LVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp EEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred EEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 99885 44433333667 99999998863
No 176
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=98.49 E-value=8.4e-07 Score=58.34 Aligned_cols=103 Identities=17% Similarity=0.249 Sum_probs=82.2
Q ss_pred CcCeEEeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCccE
Q 045454 21 SKNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPT 100 (133)
Q Consensus 21 ~~~~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~P~ 100 (133)
-+.+.+| |..+|...+.++ .++-+|+|..|...-|.|.-+...|+.++.+||.+.|+.+-.... ...|--...||
T Consensus 90 fG~V~~I-Sg~dyv~EVT~A-s~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~c---IpNYPe~nlPT 164 (240)
T KOG3170|consen 90 FGEVFPI-SGPDYVKEVTKA-SEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTC---IPNYPESNLPT 164 (240)
T ss_pred ccceeec-cchHHHHHHHhc-cCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccc---cCCCcccCCCe
Confidence 4556666 567788888776 678899999999999999999999999999999999998876654 45677788999
Q ss_pred EEEEeCCeEEEEeeCC--------CHHHHHHHHHHH
Q 045454 101 FFFLKDGRQIDKLIGS--------NKLELQRKTAAV 128 (133)
Q Consensus 101 ~~~~~~g~~~~~~~g~--------~~~~l~~~~~~~ 128 (133)
+++|..|.+...++|. +.+++..++-+.
T Consensus 165 l~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 165 LLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred EEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence 9999988777766642 566676666543
No 177
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.47 E-value=2.8e-06 Score=47.43 Aligned_cols=56 Identities=18% Similarity=0.300 Sum_probs=40.8
Q ss_pred EEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChh---hHhhcCCCCccEEEEEeCCeEE
Q 045454 48 VANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPE---FSNSWGVTATPTFFFLKDGRQI 110 (133)
Q Consensus 48 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~---~~~~~~v~~~P~~~~~~~g~~~ 110 (133)
+++|..+|||+|.+++..|.+. ++.+..+|+++++. +....+...+|.++ .+|+.+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~~~~~~~~~g~~~vP~if--i~g~~i 61 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKDITGRSLRAVTGAMTVPQVF--IDGELI 61 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCChhHHHHHHHhCCCCcCeEE--ECCEEE
Confidence 5679999999999999998864 55566677765542 33334888999985 557654
No 178
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.46 E-value=3.9e-06 Score=48.07 Aligned_cols=77 Identities=17% Similarity=0.311 Sum_probs=57.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCccEEEEEeCC--eEEEEeeCC-CHHHHHHH
Q 045454 48 VANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFLKDG--RQIDKLIGS-NKLELQRK 124 (133)
Q Consensus 48 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~g--~~~~~~~g~-~~~~l~~~ 124 (133)
+++|+.+.|+-|..+...|..+.... .+.+-.+|+++++++..+|+. .+|.+.+-..+ .......+. +.+.|.++
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~-~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~~ 79 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF-PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLRAW 79 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS-TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHHHH
Confidence 67899999999999999999976665 488899999999999999996 79997744210 101234455 88998887
Q ss_pred HH
Q 045454 125 TA 126 (133)
Q Consensus 125 ~~ 126 (133)
++
T Consensus 80 L~ 81 (81)
T PF05768_consen 80 LE 81 (81)
T ss_dssp HH
T ss_pred hC
Confidence 74
No 179
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.42 E-value=2.1e-06 Score=47.29 Aligned_cols=57 Identities=26% Similarity=0.384 Sum_probs=42.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhH----hhcCCCCccEEEEEeCCeEEE
Q 045454 48 VANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFS----NSWGVTATPTFFFLKDGRQID 111 (133)
Q Consensus 48 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~----~~~~v~~~P~~~~~~~g~~~~ 111 (133)
++.|+++||++|+.++..|.+.. +.+..+|++.+++.. +..+...+|+++ .+|+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~--~~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-----IEFEEIDILEDGELREELKELSGWPTVPQIF--INGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEEe
Confidence 46799999999999999998774 566778887766433 334677899875 4676553
No 180
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.42 E-value=1e-06 Score=50.06 Aligned_cols=56 Identities=16% Similarity=0.396 Sum_probs=41.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhh----cCCCCccEEEEEeCCeEE
Q 045454 48 VANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNS----WGVTATPTFFFLKDGRQI 110 (133)
Q Consensus 48 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~----~~v~~~P~~~~~~~g~~~ 110 (133)
+.+|+.+|||+|+.++..|++. ++.+-.+|++.++...+. .+...+|+++ .+|+.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~--i~g~~i 60 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-----GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIF--IGDVHV 60 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-----CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEE--ECCEEE
Confidence 3578999999999999999864 455566677776654444 4788999985 557554
No 181
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.40 E-value=3.3e-06 Score=47.35 Aligned_cols=56 Identities=20% Similarity=0.326 Sum_probs=41.6
Q ss_pred EEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhh----cCCC-CccEEEEEeCCeEE
Q 045454 48 VANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNS----WGVT-ATPTFFFLKDGRQI 110 (133)
Q Consensus 48 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~----~~v~-~~P~~~~~~~g~~~ 110 (133)
+.+|+.+||++|+.++..|.+. ++.+-.+|++.+++..+. .+.. .+|+++ .+|+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~--i~g~~i 62 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF--IGDVHI 62 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE--ECCEEE
Confidence 4679999999999999999864 566677888876554433 4666 899886 557554
No 182
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.36 E-value=3.4e-06 Score=47.19 Aligned_cols=57 Identities=18% Similarity=0.422 Sum_probs=43.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChh----hHhhcCCCCccEEEEEeCCeEEE
Q 045454 48 VANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPE----FSNSWGVTATPTFFFLKDGRQID 111 (133)
Q Consensus 48 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~----~~~~~~v~~~P~~~~~~~g~~~~ 111 (133)
++.|+.+||++|++++..|++. ++.+..+|+++.+. +.+..+...+|+++ .+|+.+.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-----gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~--i~~~~iG 63 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-----GLPYVEINIDIFPERKAELEERTGSSVVPQIF--FNEKLVG 63 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEEe
Confidence 4579999999999999999874 56677788887664 44455778899986 5566543
No 183
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.32 E-value=7.3e-06 Score=48.57 Aligned_cols=50 Identities=16% Similarity=0.220 Sum_probs=37.1
Q ss_pred CCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhH----hhcCCCCccEEEEEeCCeEE
Q 045454 54 QWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFS----NSWGVTATPTFFFLKDGRQI 110 (133)
Q Consensus 54 ~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~----~~~~v~~~P~~~~~~~g~~~ 110 (133)
+|||+|++++..|.+. ++.+..+|++++++.. +..|...+|.++ .+|+.+
T Consensus 25 ~~Cp~C~~ak~lL~~~-----~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf--i~g~~i 78 (97)
T TIGR00365 25 PQCGFSARAVQILKAC-----GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY--VKGEFV 78 (97)
T ss_pred CCCchHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEE--ECCEEE
Confidence 8999999999999876 4556678887766543 334677899986 557654
No 184
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=4.1e-06 Score=47.90 Aligned_cols=55 Identities=22% Similarity=0.389 Sum_probs=40.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCCh-----hhHhhc-CCCCccEEEEEeCCeE
Q 045454 48 VANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELP-----EFSNSW-GVTATPTFFFLKDGRQ 109 (133)
Q Consensus 48 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~-----~~~~~~-~v~~~P~~~~~~~g~~ 109 (133)
+.+|..+|||+|+++...|.+. ++.+..++++.++ +.+++. |.+.+|.++ .+|+.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~-----g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~--i~~~~ 63 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK-----GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIF--IGGKH 63 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc-----CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEE--ECCEE
Confidence 5679999999999999999843 5666666666544 334444 789999988 45653
No 185
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=98.28 E-value=6.3e-06 Score=53.62 Aligned_cols=36 Identities=25% Similarity=0.447 Sum_probs=31.1
Q ss_pred CCcEEEEEEecCCChhhhhhhHHHHHHHhhCCC-eEE
Q 045454 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYPS-MIC 78 (133)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~ 78 (133)
+.++.++.|+...||+|+.+.+.+..+.+++++ +.+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~ 50 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKF 50 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceE
Confidence 678999999999999999999999999887753 444
No 186
>PRK10638 glutaredoxin 3; Provisional
Probab=98.27 E-value=2.4e-06 Score=49.09 Aligned_cols=57 Identities=18% Similarity=0.300 Sum_probs=41.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhh----HhhcCCCCccEEEEEeCCeEEE
Q 045454 48 VANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEF----SNSWGVTATPTFFFLKDGRQID 111 (133)
Q Consensus 48 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~----~~~~~v~~~P~~~~~~~g~~~~ 111 (133)
+..|..+||++|++++..|.+. ++.+..+|++++++. .+..+...+|+++ .+|+.+.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~--~~g~~ig 64 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIF--IDAQHIG 64 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEEe
Confidence 5578899999999999999875 455566777766543 3444788899885 4676553
No 187
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.26 E-value=5.7e-05 Score=47.13 Aligned_cols=103 Identities=14% Similarity=0.232 Sum_probs=74.6
Q ss_pred CeEEeechhhHHHHHhhhhhCCcEEEEEEecCC---C-hhh-hhhhHHHHHHHhhCC-C-eEEEEEeCCCChhhHhhcCC
Q 045454 23 NVHLITTMVSWEAKVSESIKDGKIVVANFSAQW---C-SPC-KKIAPVYIQLADKYP-S-MICLTVDVDELPEFSNSWGV 95 (133)
Q Consensus 23 ~~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~---C-~~C-~~~~~~l~~~~~~~~-~-v~~~~id~d~~~~~~~~~~v 95 (133)
.++.+++.+.+++... +++.=+|-| -+. | +.+ ......+.++++.++ . +.|+.+|.++.+.+.+.||+
T Consensus 3 ~~~~l~~~~~~~~~C~----~~~~C~i~~-l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl 77 (130)
T cd02983 3 EIIELTSEDVFEETCE----EKQLCIIAF-LPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNI 77 (130)
T ss_pred ceEEecCHHHHHhhcc----CCCeEEEEE-cCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCC
Confidence 5677777776666663 345545545 332 2 223 456788889999995 4 89999999999999999998
Q ss_pred C--CccEEEEEeCCeEEEE-eeCC-CHHHHHHHHHHHHH
Q 045454 96 T--ATPTFFFLKDGRQIDK-LIGS-NKLELQRKTAAVSK 130 (133)
Q Consensus 96 ~--~~P~~~~~~~g~~~~~-~~g~-~~~~l~~~~~~~~~ 130 (133)
. .+|+++++...+..+. +.|. +.+.+.+|++.++.
T Consensus 78 ~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~ 116 (130)
T cd02983 78 GGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSY 116 (130)
T ss_pred CccCCCEEEEEecccCccccccCccCHHHHHHHHHHHHc
Confidence 5 4999998844332444 5677 99999999998865
No 188
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.25 E-value=5.6e-05 Score=53.84 Aligned_cols=99 Identities=14% Similarity=0.154 Sum_probs=69.2
Q ss_pred EeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhh------HHHHHH-HhhC--CCeEEEEEeCCCChhhHhhcCCC
Q 045454 26 LITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIA------PVYIQL-ADKY--PSMICLTVDVDELPEFSNSWGVT 96 (133)
Q Consensus 26 ~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~------~~l~~~-~~~~--~~v~~~~id~d~~~~~~~~~~v~ 96 (133)
.-.+..+|.+.++ +....+|+|+.+-- ..+... ..+-++ |+-+ .++.|..+|......+++++|+.
T Consensus 37 i~LneKNfk~~lK----kyd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~ 111 (383)
T PF01216_consen 37 IDLNEKNFKRALK----KYDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVE 111 (383)
T ss_dssp EEE-TTTHHHHHH----H-SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--
T ss_pred EEcchhHHHHHHH----hhcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCcc
Confidence 3446788999884 57888888988763 222222 212233 3333 57999999999999999999999
Q ss_pred CccEEEEEeCCeEEEEeeCC-CHHHHHHHHHHHHH
Q 045454 97 ATPTFFFLKDGRQIDKLIGS-NKLELQRKTAAVSK 130 (133)
Q Consensus 97 ~~P~~~~~~~g~~~~~~~g~-~~~~l~~~~~~~~~ 130 (133)
..+++++|++|+.+ .+.|. ++..|..|+-.+++
T Consensus 112 E~~SiyVfkd~~~I-EydG~~saDtLVeFl~dl~e 145 (383)
T PF01216_consen 112 EEGSIYVFKDGEVI-EYDGERSADTLVEFLLDLLE 145 (383)
T ss_dssp STTEEEEEETTEEE-EE-S--SHHHHHHHHHHHHS
T ss_pred ccCcEEEEECCcEE-EecCccCHHHHHHHHHHhcc
Confidence 99999999999998 55588 99999999988764
No 189
>PRK10824 glutaredoxin-4; Provisional
Probab=98.23 E-value=5.3e-06 Score=50.56 Aligned_cols=68 Identities=15% Similarity=0.272 Sum_probs=43.7
Q ss_pred HHHhhhhhCCcEEEEEEec-----CCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhc----CCCCccEEEEEe
Q 045454 35 AKVSESIKDGKIVVANFSA-----QWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSW----GVTATPTFFFLK 105 (133)
Q Consensus 35 ~~~~~~~~~~~~~lv~f~~-----~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~----~v~~~P~~~~~~ 105 (133)
+.++..+.++++++ |.. ||||+|+++...|..+. +.+..+|+++++++...+ |-+.+|.++ .
T Consensus 6 ~~v~~~I~~~~Vvv--f~Kg~~~~p~Cpyc~~ak~lL~~~~-----i~~~~idi~~d~~~~~~l~~~sg~~TVPQIF--I 76 (115)
T PRK10824 6 EKIQRQIAENPILL--YMKGSPKLPSCGFSAQAVQALSACG-----ERFAYVDILQNPDIRAELPKYANWPTFPQLW--V 76 (115)
T ss_pred HHHHHHHhcCCEEE--EECCCCCCCCCchHHHHHHHHHHcC-----CCceEEEecCCHHHHHHHHHHhCCCCCCeEE--E
Confidence 34444444555443 444 59999999999998873 344456666665543333 677889887 5
Q ss_pred CCeEEE
Q 045454 106 DGRQID 111 (133)
Q Consensus 106 ~g~~~~ 111 (133)
+|+.++
T Consensus 77 ~G~~IG 82 (115)
T PRK10824 77 DGELVG 82 (115)
T ss_pred CCEEEc
Confidence 676664
No 190
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.22 E-value=5.2e-05 Score=48.50 Aligned_cols=81 Identities=28% Similarity=0.481 Sum_probs=60.4
Q ss_pred hCCcEEEEEEecCCChhhhhhhHHHHHHHhhC--C-CeEEEEEeCCCC--------------------------------
Q 045454 42 KDGKIVVANFSAQWCSPCKKIAPVYIQLADKY--P-SMICLTVDVDEL-------------------------------- 86 (133)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~--~-~v~~~~id~d~~-------------------------------- 86 (133)
.+.+++|+.|+...||+|..+.+.+.++.+++ + .+.+...+.-..
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQ 89 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 46789999999999999999999999988887 4 476666653100
Q ss_pred ------------------------------------hhhHhhcCCCCccEEEEEeCCeEEEEeeCC-CHHHHHHHHHH
Q 045454 87 ------------------------------------PEFSNSWGVTATPTFFFLKDGRQIDKLIGS-NKLELQRKTAA 127 (133)
Q Consensus 87 ------------------------------------~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~~~~ 127 (133)
....++++|.++|++++ +|+.+ .|. +.+++.++|++
T Consensus 90 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~~---~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 90 ENFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKYV---VGPYTIEELKELIDK 162 (162)
T ss_dssp HSTSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCEE---ETTTSHHHHHHHHHH
T ss_pred hccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEEe---CCCCCHHHHHHHHcC
Confidence 02356678999999996 78774 666 99999988874
No 191
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=98.21 E-value=1.8e-05 Score=47.52 Aligned_cols=87 Identities=18% Similarity=0.244 Sum_probs=63.0
Q ss_pred eEEeechhhHHHHHhhhhhCCcEEEEEEecCCC---hhhhhhhHHHHHHHhhCCC-eEEEEEeCCCChhhHhhcCCCCcc
Q 045454 24 VHLITTMVSWEAKVSESIKDGKIVVANFSAQWC---SPCKKIAPVYIQLADKYPS-MICLTVDVDELPEFSNSWGVTATP 99 (133)
Q Consensus 24 ~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C---~~C~~~~~~l~~~~~~~~~-v~~~~id~d~~~~~~~~~~v~~~P 99 (133)
+..+. .+++++.+. .....++ |++..+ +.+....-.+-++.+.+++ +....+.......+..+|++..+|
T Consensus 11 ~~~vd-~~~ld~~l~----~~~~~vl-f~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~P 84 (107)
T PF07449_consen 11 WPRVD-ADTLDAFLA----APGDAVL-FFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWP 84 (107)
T ss_dssp EEEE--CCCHHHHHH----CCSCEEE-EESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSS
T ss_pred Ceeec-hhhHHHHHh----CCCcEEE-EECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCC
Confidence 34443 577777773 4555555 444444 5555555577788888876 666777777888999999999999
Q ss_pred EEEEEeCCeEEEEeeCC
Q 045454 100 TFFFLKDGRQIDKLIGS 116 (133)
Q Consensus 100 ~~~~~~~g~~~~~~~g~ 116 (133)
+++|+++|+.+..+.|.
T Consensus 85 aLvf~R~g~~lG~i~gi 101 (107)
T PF07449_consen 85 ALVFFRDGRYLGAIEGI 101 (107)
T ss_dssp EEEEEETTEEEEEEESS
T ss_pred eEEEEECCEEEEEecCe
Confidence 99999999999999887
No 192
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=3.1e-05 Score=54.32 Aligned_cols=109 Identities=17% Similarity=0.291 Sum_probs=79.0
Q ss_pred cCcCeEEeechhhHHHHHhhhhhCCcEEEEEEecC----CChhhhhhhHHHHHHHhhC----C-----CeEEEEEeCCCC
Q 045454 20 ASKNVHLITTMVSWEAKVSESIKDGKIVVANFSAQ----WCSPCKKIAPVYIQLADKY----P-----SMICLTVDVDEL 86 (133)
Q Consensus 20 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~----~C~~C~~~~~~l~~~~~~~----~-----~v~~~~id~d~~ 86 (133)
..+.++... .+.|...+... .++-.++++|.|. .|.-|+.+..++.-++..+ + .+=|..+|.++.
T Consensus 38 s~~~VI~~n-~d~~~~~v~~~-prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~ 115 (331)
T KOG2603|consen 38 SESGVIRMN-DDKFSKFVRPP-PRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDES 115 (331)
T ss_pred CCCCeEEec-CcchhhhccCC-CCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecccc
Confidence 345555554 47788777633 5677888888876 7999999999998887644 1 156899999999
Q ss_pred hhhHhhcCCCCccEEEEEe--CCeE------EEEeeCCCHHHHHHHHHHHHH
Q 045454 87 PEFSNSWGVTATPTFFFLK--DGRQ------IDKLIGSNKLELQRKTAAVSK 130 (133)
Q Consensus 87 ~~~~~~~~v~~~P~~~~~~--~g~~------~~~~~g~~~~~l~~~~~~~~~ 130 (133)
|+..++++++.+|++++|. .|+. .....|...+.+.++++...+
T Consensus 116 p~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tk 167 (331)
T KOG2603|consen 116 PQVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTK 167 (331)
T ss_pred HHHHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhh
Confidence 9999999999999999992 2222 222334467777777776543
No 193
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.13 E-value=2e-05 Score=46.02 Aligned_cols=50 Identities=20% Similarity=0.267 Sum_probs=36.4
Q ss_pred CCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHh----hcCCCCccEEEEEeCCeEE
Q 045454 54 QWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSN----SWGVTATPTFFFLKDGRQI 110 (133)
Q Consensus 54 ~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~----~~~v~~~P~~~~~~~g~~~ 110 (133)
+|||+|++++..|.+. ++.+..+|++.++++.+ ..|...+|.++ .+|+.+
T Consensus 21 ~~Cp~C~~ak~~L~~~-----~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vf--i~g~~i 74 (90)
T cd03028 21 PRCGFSRKVVQILNQL-----GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLY--VNGELV 74 (90)
T ss_pred CCCcHHHHHHHHHHHc-----CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEE--ECCEEE
Confidence 6999999999999886 35566677776665433 34778899985 467654
No 194
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.10 E-value=8.5e-05 Score=56.88 Aligned_cols=89 Identities=19% Similarity=0.153 Sum_probs=75.1
Q ss_pred hCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCccEEEEEe-CCeEE-EEeeCC-CH
Q 045454 42 KDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFLK-DGRQI-DKLIGS-NK 118 (133)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~-~g~~~-~~~~g~-~~ 118 (133)
..+.+.++.|+.+.|..|..+..+|++++...+.+.+...|...+....++|++...|++.++. +|+.. -+|.|. .-
T Consensus 364 l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G 443 (555)
T TIGR03143 364 LENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSG 443 (555)
T ss_pred cCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCcc
Confidence 3667788889999999999999999999977777888888988899999999999999999984 55322 378888 88
Q ss_pred HHHHHHHHHHHH
Q 045454 119 LELQRKTAAVSK 130 (133)
Q Consensus 119 ~~l~~~~~~~~~ 130 (133)
.++..+|..++.
T Consensus 444 ~Ef~s~i~~i~~ 455 (555)
T TIGR03143 444 HELNSFILALYN 455 (555)
T ss_pred HhHHHHHHHHHH
Confidence 999999988764
No 195
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=6e-05 Score=45.12 Aligned_cols=56 Identities=25% Similarity=0.386 Sum_probs=38.7
Q ss_pred EEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCCh-hhHhhc----CCCCccEEEEEeCCeEE
Q 045454 50 NFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELP-EFSNSW----GVTATPTFFFLKDGRQI 110 (133)
Q Consensus 50 ~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~-~~~~~~----~v~~~P~~~~~~~g~~~ 110 (133)
.|..+||++|+++...|.++ -....++.+|.+++. ++.+.+ +-+.+|.++ -+|+.+
T Consensus 18 ifSKs~C~~c~~~k~ll~~~---~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vF--I~Gk~i 78 (104)
T KOG1752|consen 18 IFSKSSCPYCHRAKELLSDL---GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVF--IGGKFI 78 (104)
T ss_pred EEECCcCchHHHHHHHHHhC---CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEE--ECCEEE
Confidence 59999999999988888772 124566667766554 333333 466899987 557665
No 196
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=98.01 E-value=3.7e-05 Score=51.64 Aligned_cols=37 Identities=24% Similarity=0.471 Sum_probs=29.4
Q ss_pred CcEEEEEEecCCChhhhhhhHHH---HHHHhhCC-CeEEEE
Q 045454 44 GKIVVANFSAQWCSPCKKIAPVY---IQLADKYP-SMICLT 80 (133)
Q Consensus 44 ~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~-~v~~~~ 80 (133)
+++.|+.|+...||+|..+.+.+ ..+.+.++ ++.+..
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~ 77 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTK 77 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEE
Confidence 56779999999999999999876 77788775 455544
No 197
>PTZ00062 glutaredoxin; Provisional
Probab=97.92 E-value=0.00011 Score=49.32 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=46.8
Q ss_pred hHHHHHhhhhhCCcEEEEEE---ecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhh----cCCCCccEEEEE
Q 045454 32 SWEAKVSESIKDGKIVVANF---SAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNS----WGVTATPTFFFL 104 (133)
Q Consensus 32 ~~~~~~~~~~~~~~~~lv~f---~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~----~~v~~~P~~~~~ 104 (133)
+..+.+++...+++++|..= +.|||++|+++...|.+. ++.+..+|+++.++..+. .|-+.+|.++
T Consensus 101 ~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-----~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVf-- 173 (204)
T PTZ00062 101 DTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSS-----GVKYETYNIFEDPDLREELKVYSNWPTYPQLY-- 173 (204)
T ss_pred HHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHc-----CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEE--
Confidence 35555665545555554333 236999999999988865 556667788776654333 3667788887
Q ss_pred eCCeEE
Q 045454 105 KDGRQI 110 (133)
Q Consensus 105 ~~g~~~ 110 (133)
.+|+.+
T Consensus 174 I~G~~I 179 (204)
T PTZ00062 174 VNGELI 179 (204)
T ss_pred ECCEEE
Confidence 557665
No 198
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.92 E-value=0.00022 Score=43.29 Aligned_cols=86 Identities=13% Similarity=0.014 Sum_probs=63.5
Q ss_pred CCcEEEEEEecCCChhhhhhhHHHHHHHhh---CCC-eEEEEEeCCCChhhHhhcCCCC--ccEEEEEeCCe-EEEE-ee
Q 045454 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADK---YPS-MICLTVDVDELPEFSNSWGVTA--TPTFFFLKDGR-QIDK-LI 114 (133)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~---~~~-v~~~~id~d~~~~~~~~~~v~~--~P~~~~~~~g~-~~~~-~~ 114 (133)
.+.+..++|+ .-..-...+..+..+++. +++ +.|+.+|.+.....++.||+.. +|.+.+..... ..+. ..
T Consensus 15 ~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~~~~~~Ky~~~~ 92 (111)
T cd03072 15 EGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAIDSFRHMYLFPDFE 92 (111)
T ss_pred CCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEEEcchhcCcCCCCc
Confidence 3444444555 223347788999999999 865 9999999999887899999997 99999884322 2223 44
Q ss_pred CC-CHHHHHHHHHHHHH
Q 045454 115 GS-NKLELQRKTAAVSK 130 (133)
Q Consensus 115 g~-~~~~l~~~~~~~~~ 130 (133)
+. +.+.|.+|+++++.
T Consensus 93 ~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 93 DVYVPGKLKQFVLDLHS 109 (111)
T ss_pred cccCHHHHHHHHHHHhc
Confidence 55 88999999998764
No 199
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.83 E-value=4.2e-05 Score=56.48 Aligned_cols=56 Identities=14% Similarity=0.258 Sum_probs=42.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChh---hHhh---------cCCCCccEEEEEeCCeEE
Q 045454 48 VANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPE---FSNS---------WGVTATPTFFFLKDGRQI 110 (133)
Q Consensus 48 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~---~~~~---------~~v~~~P~~~~~~~g~~~ 110 (133)
|++|..+|||+|++++..|.+. ++.+..+|+++.+. +.++ .|.+.+|++++ +|+.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~i 71 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHI 71 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEE
Confidence 6689999999999999999875 67777888887663 2222 36788999974 56554
No 200
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00059 Score=43.81 Aligned_cols=88 Identities=23% Similarity=0.265 Sum_probs=60.0
Q ss_pred hhCCcEEEEEEe-cCCChhhhhhhHHHHHHHhhCC--CeEEEEEeCC---------------------CChhhHhhcCCC
Q 045454 41 IKDGKIVVANFS-AQWCSPCKKIAPVYIQLADKYP--SMICLTVDVD---------------------ELPEFSNSWGVT 96 (133)
Q Consensus 41 ~~~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~id~d---------------------~~~~~~~~~~v~ 96 (133)
...++++||+|| ..++|.|-...-.+++...++. +..++.|..| ....+++.||+.
T Consensus 27 d~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~ 106 (157)
T COG1225 27 DLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVW 106 (157)
T ss_pred HhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcc
Confidence 356889999999 8899999887777777666553 5667777654 456678888864
Q ss_pred C------------ccEEEEE-eCCeEEEEeeCC-CHHHHHHHHHHH
Q 045454 97 A------------TPTFFFL-KDGRQIDKLIGS-NKLELQRKTAAV 128 (133)
Q Consensus 97 ~------------~P~~~~~-~~g~~~~~~~g~-~~~~l~~~~~~~ 128 (133)
. .++.+++ ++|++...+... ......+.++.+
T Consensus 107 ~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l 152 (157)
T COG1225 107 GEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAAL 152 (157)
T ss_pred cccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHH
Confidence 3 3555556 789998887554 444444444433
No 201
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.74 E-value=0.00092 Score=39.11 Aligned_cols=91 Identities=13% Similarity=0.048 Sum_probs=62.8
Q ss_pred EeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC-CeEEEEEeCCCChhhHhhcCCCCccEEEEE
Q 045454 26 LITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP-SMICLTVDVDELPEFSNSWGVTATPTFFFL 104 (133)
Q Consensus 26 ~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~id~d~~~~~~~~~~v~~~P~~~~~ 104 (133)
.+.+.+.++..+ ..+++++|-|+..++. .....+.+++..+. ++.|..+. +.++.+++++. .|++.++
T Consensus 3 ~i~s~~~l~~~~----~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~-~~~i~l~ 71 (97)
T cd02981 3 ELTSKEELEKFL----DKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVK-PGSVVLF 71 (97)
T ss_pred ecCCHHHHHHHh----ccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCC-CCceEEe
Confidence 455555555544 4688888889999887 46677778888775 57776655 45667777765 4888888
Q ss_pred eCC-eEEEEeeCC-CHHHHHHHHHH
Q 045454 105 KDG-RQIDKLIGS-NKLELQRKTAA 127 (133)
Q Consensus 105 ~~g-~~~~~~~g~-~~~~l~~~~~~ 127 (133)
+.. .....+.|. +.+.|.+|+..
T Consensus 72 ~~~~~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 72 KPFEEEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred CCcccCCccCCCCCCHHHHHHHHHh
Confidence 542 333456777 77888888763
No 202
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.69 E-value=0.00028 Score=40.75 Aligned_cols=58 Identities=21% Similarity=0.271 Sum_probs=41.6
Q ss_pred EEEEecCCChhhhhhhHHHHHHHhhCC-CeEEEEEe--CCCC------------------------------hhhHhhcC
Q 045454 48 VANFSAQWCSPCKKIAPVYIQLADKYP-SMICLTVD--VDEL------------------------------PEFSNSWG 94 (133)
Q Consensus 48 lv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~id--~d~~------------------------------~~~~~~~~ 94 (133)
+.+|+.+.||+|..+.+.+.++....+ ++.+.... .... ....+.+|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 467999999999999999999875554 35444443 3222 13466779
Q ss_pred CCCccEEEEEe
Q 045454 95 VTATPTFFFLK 105 (133)
Q Consensus 95 v~~~P~~~~~~ 105 (133)
+.++|++++..
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999999663
No 203
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.52 E-value=0.0015 Score=44.60 Aligned_cols=63 Identities=16% Similarity=0.233 Sum_probs=44.9
Q ss_pred ccCcCeEEeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCC-eEEEEEeC
Q 045454 19 FASKNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPS-MICLTVDV 83 (133)
Q Consensus 19 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~id~ 83 (133)
...+++..+.... . ..+......++|.||.|++-.||+=..-.+.++++.+++++ +.|+.|-+
T Consensus 79 APns~vv~l~g~~-~-~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI 142 (237)
T PF00837_consen 79 APNSPVVTLDGQR-S-CRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYI 142 (237)
T ss_pred CCCCceEeeCCCc-c-eeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhH
Confidence 4445555553322 1 22333336899999999999999999999999999999986 56666654
No 204
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.45 E-value=0.0016 Score=39.47 Aligned_cols=73 Identities=8% Similarity=0.068 Sum_probs=54.0
Q ss_pred ChhhhhhhHHHHHHHhhCC-C-eEEEEEeCCCChhhHhhcCCCC----ccEEEEEeCCeEEEEee-CC-CHHHHHHHHHH
Q 045454 56 CSPCKKIAPVYIQLADKYP-S-MICLTVDVDELPEFSNSWGVTA----TPTFFFLKDGRQIDKLI-GS-NKLELQRKTAA 127 (133)
Q Consensus 56 C~~C~~~~~~l~~~~~~~~-~-v~~~~id~d~~~~~~~~~~v~~----~P~~~~~~~g~~~~~~~-g~-~~~~l~~~~~~ 127 (133)
-..-...+..+.++++.++ + +.|+.+|.++....++.||+.. +|.+.+...+...+... .. +.+.|.+|++.
T Consensus 30 ~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~ 109 (111)
T cd03073 30 PKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFLED 109 (111)
T ss_pred hhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHHHH
Confidence 3445678899999999998 4 9999999998888899999984 99999884322222222 23 66788888876
Q ss_pred H
Q 045454 128 V 128 (133)
Q Consensus 128 ~ 128 (133)
.
T Consensus 110 f 110 (111)
T cd03073 110 F 110 (111)
T ss_pred h
Confidence 4
No 205
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00099 Score=51.50 Aligned_cols=76 Identities=20% Similarity=0.346 Sum_probs=57.7
Q ss_pred HHhhhhhCCcEEEEEEecCCChhhhhhhHHH---HHHHhhC-CCeEEEEEeCCCChhhHhhc--------CCCCccEEEE
Q 045454 36 KVSESIKDGKIVVANFSAQWCSPCKKIAPVY---IQLADKY-PSMICLTVDVDELPEFSNSW--------GVTATPTFFF 103 (133)
Q Consensus 36 ~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~-~~v~~~~id~d~~~~~~~~~--------~v~~~P~~~~ 103 (133)
.+.++..+++|++|-+..+||-.|+.+...- .+++..+ .++.-+.||.++-|++-+.| |-.+.|-.+|
T Consensus 35 Af~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPLtVf 114 (667)
T COG1331 35 AFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWPLTVF 114 (667)
T ss_pred HHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCceeEE
Confidence 4455557899999999999999999885544 2455544 34777889999999876666 3568997777
Q ss_pred E-eCCeEEE
Q 045454 104 L-KDGRQID 111 (133)
Q Consensus 104 ~-~~g~~~~ 111 (133)
+ ++|++..
T Consensus 115 LTPd~kPFf 123 (667)
T COG1331 115 LTPDGKPFF 123 (667)
T ss_pred ECCCCceee
Confidence 6 8888876
No 206
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.26 E-value=0.0012 Score=42.09 Aligned_cols=57 Identities=19% Similarity=0.338 Sum_probs=40.3
Q ss_pred EEEEecC------CChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhH----hhcCC----CCccEEEEEeCCeEEE
Q 045454 48 VANFSAQ------WCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFS----NSWGV----TATPTFFFLKDGRQID 111 (133)
Q Consensus 48 lv~f~~~------~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~----~~~~v----~~~P~~~~~~~g~~~~ 111 (133)
|++|+++ +|++|++++..|+.+ ++.+-.+|++.++++. +.++- ..+|.++ .+|+.+.
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-----~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVF--I~G~~IG 72 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-----RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVF--VDGRYLG 72 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEE--ECCEEEe
Confidence 3456666 899999999999876 5677888988776543 33344 6789887 4575553
No 207
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.03 E-value=0.03 Score=34.43 Aligned_cols=96 Identities=13% Similarity=0.203 Sum_probs=60.9
Q ss_pred chhhHHHHHhhhhhCCcEEEEEEecCCC-hhhhhhhHHHH-HHHhhCCCeEEEEEeCC-----CChhhHhhcCC--CCcc
Q 045454 29 TMVSWEAKVSESIKDGKIVVANFSAQWC-SPCKKIAPVYI-QLADKYPSMICLTVDVD-----ELPEFSNSWGV--TATP 99 (133)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~lv~f~~~~C-~~C~~~~~~l~-~~~~~~~~v~~~~id~d-----~~~~~~~~~~v--~~~P 99 (133)
+.-+|+..+ ...+.+||.|-...= +.=+.....+. +.....+++-+..+.+. +|.++.++|++ ..+|
T Consensus 10 D~~tFdKvi----~kf~~~LVKFD~ayPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fP 85 (126)
T PF07912_consen 10 DELTFDKVI----PKFKYVLVKFDVAYPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFP 85 (126)
T ss_dssp STTHHHHHG----GGSSEEEEEEEESS--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-S
T ss_pred cceehhhee----ccCceEEEEEeccCCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCC
Confidence 445788777 467999999975432 22222222222 33333456878888774 67899999998 5699
Q ss_pred EEEEEe-CCeEEEEe--eCC-CHHHHHHHHHHH
Q 045454 100 TFFFLK-DGRQIDKL--IGS-NKLELQRKTAAV 128 (133)
Q Consensus 100 ~~~~~~-~g~~~~~~--~g~-~~~~l~~~~~~~ 128 (133)
.+++|. +....-.+ .|. +.+.|.+|+++.
T Consensus 86 v~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 86 VIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp EEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHT
T ss_pred EEEEecCCCCCCccCCccCCccHHHHHHHHHhC
Confidence 999995 44444456 676 999999999875
No 208
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=96.98 E-value=0.015 Score=38.14 Aligned_cols=30 Identities=23% Similarity=0.451 Sum_probs=26.0
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHhhCCCe
Q 045454 47 VVANFSAQWCSPCKKIAPVYIQLADKYPSM 76 (133)
Q Consensus 47 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v 76 (133)
.|.+|+..-||+|....+.|.++.+.++++
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~ 30 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDV 30 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCC
Confidence 367889999999999999999999888553
No 209
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=96.88 E-value=0.017 Score=37.07 Aligned_cols=73 Identities=23% Similarity=0.353 Sum_probs=47.2
Q ss_pred CcEEEEEEe-cCCChhhhhh-hHHHHHHHhhCC--Ce-EEEEEeCC-----------------------CChhhHhhcCC
Q 045454 44 GKIVVANFS-AQWCSPCKKI-APVYIQLADKYP--SM-ICLTVDVD-----------------------ELPEFSNSWGV 95 (133)
Q Consensus 44 ~~~~lv~f~-~~~C~~C~~~-~~~l~~~~~~~~--~v-~~~~id~d-----------------------~~~~~~~~~~v 95 (133)
+++++|+|| +.||+.|-.. .+.+.+...++. ++ .++.+..| .+.++++.||+
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~lLsD~~~~~~~~ygv 108 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIRFLADGNGEFTKALGL 108 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEEEEECCCHHHHHHcCC
Confidence 444555554 8899999998 888888777663 45 46666654 23456777776
Q ss_pred CC-----------ccEEEEEeCCeEEEEeeCC
Q 045454 96 TA-----------TPTFFFLKDGRQIDKLIGS 116 (133)
Q Consensus 96 ~~-----------~P~~~~~~~g~~~~~~~g~ 116 (133)
.. ...++++.+|++.+.+...
T Consensus 109 ~~~~~~~~~~~~~~R~~fiId~g~I~~~~~~~ 140 (155)
T cd03013 109 TLDLSAAGGGIRSKRYALIVDDGKVKYLFVEE 140 (155)
T ss_pred CccccccCCcceeeeEEEEECCCEEEEEEEec
Confidence 31 2334555678887766654
No 210
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.015 Score=39.88 Aligned_cols=36 Identities=28% Similarity=0.395 Sum_probs=26.8
Q ss_pred hHhhcCCCCccEEEEEeCCeEEEEeeCC-CHHHHHHHHHHHH
Q 045454 89 FSNSWGVTATPTFFFLKDGRQIDKLIGS-NKLELQRKTAAVS 129 (133)
Q Consensus 89 ~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~~~~~~ 129 (133)
+.+++|+.++|++++. |+ .+.|. +..+|.+.++...
T Consensus 207 ~a~~~gv~gTPt~~v~--~~---~~~g~~~~~~l~~~i~~~~ 243 (244)
T COG1651 207 LAQQLGVNGTPTFIVN--GK---LVPGLPDLDELKAIIDEAL 243 (244)
T ss_pred HHHhcCCCcCCeEEEC--Ce---eecCCCCHHHHHHHHHHhh
Confidence 4666789999999854 44 56677 7788888887653
No 211
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=96.53 E-value=0.013 Score=32.59 Aligned_cols=58 Identities=16% Similarity=0.195 Sum_probs=48.2
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHhhC-C-CeEEEEEeCCCChhhHhhcCCCCccEEEEE
Q 045454 47 VVANFSAQWCSPCKKIAPVYIQLADKY-P-SMICLTVDVDELPEFSNSWGVTATPTFFFL 104 (133)
Q Consensus 47 ~lv~f~~~~C~~C~~~~~~l~~~~~~~-~-~v~~~~id~d~~~~~~~~~~v~~~P~~~~~ 104 (133)
.+..|-+...+.+.+....+.++-+++ + .+.+-.+|..++|.+++.+++-++||++-.
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~ 62 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKV 62 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhc
Confidence 455566667799999999999987766 3 388888999999999999999999997743
No 212
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=96.42 E-value=0.11 Score=32.69 Aligned_cols=98 Identities=13% Similarity=0.171 Sum_probs=67.1
Q ss_pred hHHHHHhhh----hhCCcEEEEEEecCCChhhhhhhH------HHHHHHhhCCCeEEEEEeCCCCh--------------
Q 045454 32 SWEAKVSES----IKDGKIVVANFSAQWCSPCKKIAP------VYIQLADKYPSMICLTVDVDELP-------------- 87 (133)
Q Consensus 32 ~~~~~~~~~----~~~~~~~lv~f~~~~C~~C~~~~~------~l~~~~~~~~~v~~~~id~d~~~-------------- 87 (133)
++.+.++++ ..+.|+.+||.+++.-+.+..+-. .+.++.+ .++.+..-|+....
T Consensus 5 s~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~--~nfv~Wg~dvt~~~~~~~fl~~~~~~~g 82 (136)
T cd02990 5 SLEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLS--QNFITWGWDMTKESNKARFLSSCTRHFG 82 (136)
T ss_pred cHHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHH--cCEEEEeeeccchhhhhHHHHhhhhhhh
Confidence 455666665 677899999999998755544422 2223322 35777777766432
Q ss_pred ----hhHhhcCCCCccEEEEE-eCC---eEEEEeeCC-CHHHHHHHHHHHHHh
Q 045454 88 ----EFSNSWGVTATPTFFFL-KDG---RQIDKLIGS-NKLELQRKTAAVSKL 131 (133)
Q Consensus 88 ----~~~~~~~v~~~P~~~~~-~~g---~~~~~~~g~-~~~~l~~~~~~~~~~ 131 (133)
...+.++...+|.+.++ +.. .++.+..|. +.+++...+.+.++.
T Consensus 83 ~~a~~~~~~~~~~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ve~ 135 (136)
T cd02990 83 SVAAQTIRNIKTDQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAMEM 135 (136)
T ss_pred HHHHHHHHhcCcCCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHHhc
Confidence 23455678999998888 322 777899999 999999888877653
No 213
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=96.24 E-value=0.11 Score=30.61 Aligned_cols=74 Identities=12% Similarity=0.135 Sum_probs=53.5
Q ss_pred CCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCccEEEEEeCCeEE-EEeeCC-CHHH
Q 045454 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFLKDGRQI-DKLIGS-NKLE 120 (133)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~g~~~-~~~~g~-~~~~ 120 (133)
++.+.++.|..+. ..|..+...+++++...+.+.+-..+.+. ..|++.+..+|+.- -++.|. .-.+
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSdkI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~GhE 85 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASLSDKITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPMGHE 85 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHhCCceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCCchh
Confidence 5666676776665 99999999999999888776664433221 47999988665321 378888 8888
Q ss_pred HHHHHHHH
Q 045454 121 LQRKTAAV 128 (133)
Q Consensus 121 l~~~~~~~ 128 (133)
+..++-.+
T Consensus 86 f~Slilai 93 (94)
T cd02974 86 FTSLVLAL 93 (94)
T ss_pred HHHHHHHh
Confidence 88887654
No 214
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.15 E-value=0.089 Score=31.29 Aligned_cols=96 Identities=10% Similarity=0.093 Sum_probs=63.7
Q ss_pred EeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCC-eEEEEEeCCC--ChhhHhhcCCC----Cc
Q 045454 26 LITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPS-MICLTVDVDE--LPEFSNSWGVT----AT 98 (133)
Q Consensus 26 ~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~id~d~--~~~~~~~~~v~----~~ 98 (133)
.|.+..+|...+ ...+.+++.|. ..-..-...+..+.+.++...| -.+..|||.+ ...+|+++.+. --
T Consensus 5 ~i~d~KdfKKLL----RTr~NVLvLy~-ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~ 79 (112)
T cd03067 5 DISDHKDFKKLL----RTRNNVLVLYS-KSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPK 79 (112)
T ss_pred cccchHHHHHHH----hhcCcEEEEEe-cchhhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCC
Confidence 455556666665 34444555444 3444444555677888888765 6677888876 67899999887 44
Q ss_pred cE-EEEEeCCeEEEEeeCC-CHHHHHHHHH
Q 045454 99 PT-FFFLKDGRQIDKLIGS-NKLELQRKTA 126 (133)
Q Consensus 99 P~-~~~~~~g~~~~~~~g~-~~~~l~~~~~ 126 (133)
|. +.=|++|..-..+... +...+..|++
T Consensus 80 ~~~LkHYKdG~fHkdYdR~~t~kSmv~Flr 109 (112)
T cd03067 80 PVELKHYKDGDFHTEYNRQLTFKSMVAFLR 109 (112)
T ss_pred cchhhcccCCCccccccchhhHHHHHHHhh
Confidence 53 4445888877777777 7777877775
No 215
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.02 E-value=0.083 Score=34.22 Aligned_cols=63 Identities=16% Similarity=0.190 Sum_probs=48.6
Q ss_pred hhHHHHHHHhhCC-CeEEEEEeCCCChhhHhhcCCCCccEEEEEeC-CeEEEEeeCC--CHHHHHHHHHHH
Q 045454 62 IAPVYIQLADKYP-SMICLTVDVDELPEFSNSWGVTATPTFFFLKD-GRQIDKLIGS--NKLELQRKTAAV 128 (133)
Q Consensus 62 ~~~~l~~~~~~~~-~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~-g~~~~~~~g~--~~~~l~~~~~~~ 128 (133)
....+.++++.+. ++.|+.+. ++++++.+++.. |++++++. ++....+.|. +.++|.+||...
T Consensus 8 ~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~ 74 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKN 74 (184)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHh
Confidence 4566778888886 58888777 677889999999 99999976 3334566774 999999999875
No 216
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.14 Score=32.85 Aligned_cols=88 Identities=18% Similarity=0.273 Sum_probs=59.0
Q ss_pred hCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC--CeEEEEEeCCCC--------hh---h-HhhcCCC-----------
Q 045454 42 KDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP--SMICLTVDVDEL--------PE---F-SNSWGVT----------- 96 (133)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~id~d~~--------~~---~-~~~~~v~----------- 96 (133)
.+++++||+-.|+-|+.-. ...-|+.+.++|+ ++.++...+.+. .+ + ...||++
T Consensus 23 ~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgVtFp~f~Ki~VnG 101 (162)
T COG0386 23 YKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGVTFPMFSKIDVNG 101 (162)
T ss_pred hCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhccCceeeeeeEEeecC
Confidence 5899999999999999876 4566777788875 466666555421 01 0 1112221
Q ss_pred ------------C-------------ccEEEEEeCCeEEEEeeCC-CHHHHHHHHHHHHH
Q 045454 97 ------------A-------------TPTFFFLKDGRQIDKLIGS-NKLELQRKTAAVSK 130 (133)
Q Consensus 97 ------------~-------------~P~~~~~~~g~~~~~~~g~-~~~~l~~~~~~~~~ 130 (133)
. +=-+++-++|+++.|+... .+.+++..|+.+++
T Consensus 102 ~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~ 161 (162)
T COG0386 102 KNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLA 161 (162)
T ss_pred CCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhc
Confidence 1 1124444899999999988 88889888887764
No 217
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=95.93 E-value=0.035 Score=32.06 Aligned_cols=71 Identities=17% Similarity=0.188 Sum_probs=56.2
Q ss_pred cEEEEEEecCCChhhhhhhHHHHHHHhhC-CC-eEEEEEeCCCChhhHhhcCCCCccEEEEEeCCeEEEEeeCC
Q 045454 45 KIVVANFSAQWCSPCKKIAPVYIQLADKY-PS-MICLTVDVDELPEFSNSWGVTATPTFFFLKDGRQIDKLIGS 116 (133)
Q Consensus 45 ~~~lv~f~~~~C~~C~~~~~~l~~~~~~~-~~-v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~ 116 (133)
..++=.|.+..-+.+++....+.++-+.+ ++ +.+-.+|+.++|.+++.+.+-++||++-.. -....+++|.
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~-P~P~rriiGd 75 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKIL-PPPVRKIIGD 75 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcC-CCCcceeecc
Confidence 44555677889999999999999886655 44 888889999999999999999999977442 2455567776
No 218
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=95.82 E-value=0.013 Score=34.95 Aligned_cols=33 Identities=12% Similarity=0.079 Sum_probs=25.0
Q ss_pred EEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCC
Q 045454 49 ANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDEL 86 (133)
Q Consensus 49 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~ 86 (133)
..|+.++|++|+.+...|++. ++.+-.+|+.+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~ 34 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH-----GIEYEFIDYLKE 34 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCCcEEEeeccC
Confidence 478999999999999888774 555556666543
No 219
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=95.78 E-value=0.19 Score=29.70 Aligned_cols=94 Identities=12% Similarity=0.096 Sum_probs=58.8
Q ss_pred eEEeechhhHHHHHhhhhh-CCcEEEEEEecCCChhhhhhhHHHHHHHhhC-CCeEEEEEeCCCChhhHhhcCCCCccEE
Q 045454 24 VHLITTMVSWEAKVSESIK-DGKIVVANFSAQWCSPCKKIAPVYIQLADKY-PSMICLTVDVDELPEFSNSWGVTATPTF 101 (133)
Q Consensus 24 ~~~i~~~~~~~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~-~~v~~~~id~d~~~~~~~~~~v~~~P~~ 101 (133)
+..+.+.++++..+ . ++.+++|-|+..--. .....+.+++..+ .++.|... .+..+...+++. .|.+
T Consensus 2 v~~i~~~~~~e~~~----~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~---~~~~~~~~~~~~-~~~i 70 (102)
T cd03066 2 VEIINSERELQAFE----NIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFAT---FDSKVAKKLGLK-MNEV 70 (102)
T ss_pred ceEcCCHHHHHHHh----cccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEE---CcHHHHHHcCCC-CCcE
Confidence 35666767777666 3 466777766665333 3455667777777 45766332 333556777664 6888
Q ss_pred EEEeC-CeEEEEe-eCC-CHHHHHHHHHHH
Q 045454 102 FFLKD-GRQIDKL-IGS-NKLELQRKTAAV 128 (133)
Q Consensus 102 ~~~~~-g~~~~~~-~g~-~~~~l~~~~~~~ 128 (133)
+++++ ......+ .|. +.+.|.+||...
T Consensus 71 ~l~~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 71 DFYEPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred EEeCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 88854 3332345 566 888999998754
No 220
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=95.77 E-value=0.063 Score=37.15 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=31.1
Q ss_pred hCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEE
Q 045454 42 KDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMIC 78 (133)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~ 78 (133)
.++|+.++++.+.|||+|...+=.|-....+++++.+
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~~l 92 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNFSL 92 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcCCeee
Confidence 5799999999999999999887777777777877743
No 221
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.60 E-value=0.31 Score=37.29 Aligned_cols=76 Identities=13% Similarity=0.156 Sum_probs=54.6
Q ss_pred CCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCccEEEEEeCCeEE-EEeeCC-CHHH
Q 045454 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFLKDGRQI-DKLIGS-NKLE 120 (133)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~g~~~-~~~~g~-~~~~ 120 (133)
++.+.++ ++.+.|..|..+..++++++...+.+.+-..+.+ ...|++.+..+|+.. -+|.|. .-.+
T Consensus 18 ~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~f~g~P~g~E 85 (517)
T PRK15317 18 ERPIELV-ASLDDSEKSAELKELLEEIASLSDKITVEEDSLD-----------VRKPSFSITRPGEDTGVRFAGIPMGHE 85 (517)
T ss_pred CCCEEEE-EEeCCCchHHHHHHHHHHHHHhCCceEEEEccCC-----------CCCCEEEEEcCCccceEEEEecCccHH
Confidence 4455554 4455899999999999999988877766432211 347999888765332 377888 8899
Q ss_pred HHHHHHHHHH
Q 045454 121 LQRKTAAVSK 130 (133)
Q Consensus 121 l~~~~~~~~~ 130 (133)
+..|+..++.
T Consensus 86 f~s~i~~i~~ 95 (517)
T PRK15317 86 FTSLVLALLQ 95 (517)
T ss_pred HHHHHHHHHH
Confidence 9999887754
No 222
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.049 Score=30.48 Aligned_cols=57 Identities=23% Similarity=0.376 Sum_probs=38.1
Q ss_pred EEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCC--------------Ch--hhHhhcCCCCccEEEEEeCCeEEE
Q 045454 49 ANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDE--------------LP--EFSNSWGVTATPTFFFLKDGRQID 111 (133)
Q Consensus 49 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~--------------~~--~~~~~~~v~~~P~~~~~~~g~~~~ 111 (133)
+.|++.-||.|..+..+++++.-.| -.+++.+ .+ +-.+..|.-++|.+.+- +|+++.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~y-----d~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~-d~~vVl 77 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDY-----DFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTD-DGKVVL 77 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCc-----eeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeC-CCcEEE
Confidence 4699999999999999998874433 2233322 22 22556677889998754 455543
No 223
>PRK09301 circadian clock protein KaiB; Provisional
Probab=95.45 E-value=0.064 Score=31.97 Aligned_cols=77 Identities=14% Similarity=0.190 Sum_probs=60.0
Q ss_pred CcEEEEEEecCCChhhhhhhHHHHHHHhhC-CC-eEEEEEeCCCChhhHhhcCCCCccEEEEEeCCeEEEEeeCC--CHH
Q 045454 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKY-PS-MICLTVDVDELPEFSNSWGVTATPTFFFLKDGRQIDKLIGS--NKL 119 (133)
Q Consensus 44 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~-~~-v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~--~~~ 119 (133)
...++=.|.+..-+.+++....+.++-+.+ ++ +.+-.||+.++|.+++.+.+-++||++-.. -....+++|. +.+
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~-P~P~rriiGDlsd~~ 83 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKIL-PPPVRKIIGDLSDRE 83 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcC-CCCcceeecccccHH
Confidence 456666777999999999999999986655 44 888889999999999999999999977442 3455677776 444
Q ss_pred HH
Q 045454 120 EL 121 (133)
Q Consensus 120 ~l 121 (133)
++
T Consensus 84 kV 85 (103)
T PRK09301 84 KV 85 (103)
T ss_pred HH
Confidence 43
No 224
>PHA03075 glutaredoxin-like protein; Provisional
Probab=95.34 E-value=0.036 Score=33.60 Aligned_cols=29 Identities=31% Similarity=0.597 Sum_probs=26.1
Q ss_pred cEEEEEEecCCChhhhhhhHHHHHHHhhC
Q 045454 45 KIVVANFSAQWCSPCKKIAPVYIQLADKY 73 (133)
Q Consensus 45 ~~~lv~f~~~~C~~C~~~~~~l~~~~~~~ 73 (133)
+.+++.|+.|.|+-|......+.++..+|
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY 30 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY 30 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence 56899999999999999999998887777
No 225
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=95.20 E-value=0.048 Score=33.23 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=26.1
Q ss_pred EEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCCh
Q 045454 49 ANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELP 87 (133)
Q Consensus 49 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~ 87 (133)
..|+.++|+.|+.+...|.+- ++.+-.+|..+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN-----GIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCceEEEecCCCh
Confidence 468999999999999888873 5556667766544
No 226
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.15 E-value=0.54 Score=36.00 Aligned_cols=77 Identities=14% Similarity=0.198 Sum_probs=55.6
Q ss_pred CCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCccEEEEEeCCeEE-EEeeCC-CHHH
Q 045454 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFLKDGRQI-DKLIGS-NKLE 120 (133)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~g~~~-~~~~g~-~~~~ 120 (133)
++.+.++.|.. .|..|..+..++++++...+.+.+...+.+. ...|++.++.+|+.. -+|.|. .-.+
T Consensus 18 ~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~s~ki~~~~~~~~~----------~~~p~~~~~~~~~~~~i~f~g~P~g~E 86 (515)
T TIGR03140 18 ENPVTLVLSAG-SHEKSKELLELLDEIASLSDKISLTQNTADT----------LRKPSFTILRDGADTGIRFAGIPGGHE 86 (515)
T ss_pred CCCEEEEEEeC-CCchhHHHHHHHHHHHHhCCCeEEEEecCCc----------CCCCeEEEecCCcccceEEEecCCcHH
Confidence 45555555555 7999999999999999888777764444322 346999888766422 378888 8889
Q ss_pred HHHHHHHHHH
Q 045454 121 LQRKTAAVSK 130 (133)
Q Consensus 121 l~~~~~~~~~ 130 (133)
+..++..++.
T Consensus 87 f~s~i~~i~~ 96 (515)
T TIGR03140 87 FTSLVLAILQ 96 (515)
T ss_pred HHHHHHHHHH
Confidence 9999887754
No 227
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=95.01 E-value=0.076 Score=29.05 Aligned_cols=57 Identities=11% Similarity=0.129 Sum_probs=37.1
Q ss_pred EEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCC-ChhhHhhcCCCCccEEEEEeCCeE
Q 045454 49 ANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDE-LPEFSNSWGVTATPTFFFLKDGRQ 109 (133)
Q Consensus 49 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~-~~~~~~~~~v~~~P~~~~~~~g~~ 109 (133)
..|+.+||++|.+.+-.+...... +.+..++... .+++.+......+|++.. .+|..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~---~e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g~~ 59 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGIT---VELREVELKNKPAEMLAASPKGTVPVLVL-GNGTV 59 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCC---cEEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCCcE
Confidence 357899999999998887766433 4445555543 345555556778999863 23544
No 228
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=94.94 E-value=0.57 Score=34.93 Aligned_cols=97 Identities=15% Similarity=0.260 Sum_probs=61.7
Q ss_pred HHHHHhhhhhCCcEEEEEEecCCChhhhhhhH-HH-HHH-HhhC-CCeEEEEEeCC--CChhhHhhcCCCCccEEEEE-e
Q 045454 33 WEAKVSESIKDGKIVVANFSAQWCSPCKKIAP-VY-IQL-ADKY-PSMICLTVDVD--ELPEFSNSWGVTATPTFFFL-K 105 (133)
Q Consensus 33 ~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~-~l-~~~-~~~~-~~v~~~~id~d--~~~~~~~~~~v~~~P~~~~~-~ 105 (133)
+-..+..+ +.++.++|+|-+........+.. .+ ... ...+ ..+..+.|+.. ....+.+-|.+..+|.++|+ .
T Consensus 8 ipeAIa~a-K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~ 86 (506)
T KOG2507|consen 8 IPEAIAEA-KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGF 86 (506)
T ss_pred hHHHHHHh-hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecC
Confidence 44555555 45566666666666666665542 22 122 2222 22444444433 23456777789999999999 8
Q ss_pred CCeEEEEeeCC-CHHHHHHHHHHHHH
Q 045454 106 DGRQIDKLIGS-NKLELQRKTAAVSK 130 (133)
Q Consensus 106 ~g~~~~~~~g~-~~~~l~~~~~~~~~ 130 (133)
.|..+....|. ..++|..-|+++.-
T Consensus 87 sGtpLevitg~v~adeL~~~i~Kv~~ 112 (506)
T KOG2507|consen 87 SGTPLEVITGFVTADELASSIEKVWL 112 (506)
T ss_pred CCceeEEeeccccHHHHHHHHHHHHH
Confidence 99999999999 88888888877643
No 229
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=94.88 E-value=0.12 Score=27.34 Aligned_cols=55 Identities=13% Similarity=-0.005 Sum_probs=35.4
Q ss_pred EEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCCh--hhHhhcCCCCccEEEEEeCCeE
Q 045454 50 NFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELP--EFSNSWGVTATPTFFFLKDGRQ 109 (133)
Q Consensus 50 ~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~--~~~~~~~v~~~P~~~~~~~g~~ 109 (133)
.|+.++|+.|.+.+-.+...... +....++.+... .+.+..+...+|++.. +|..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~--~~~~ 59 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLP---YELVPVDLGEGEQEEFLALNPLGKVPVLED--GGLV 59 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC---cEEEEeCCCCCCCHHHHhcCCCCCCCEEEE--CCEE
Confidence 57889999999988888776433 334444444332 2445567778998763 3544
No 230
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=94.87 E-value=0.047 Score=32.98 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=25.9
Q ss_pred EEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCCh
Q 045454 49 ANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELP 87 (133)
Q Consensus 49 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~ 87 (133)
..|+.++|+.|+++...|++- ++.|-.+|..+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~ 35 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH-----GVDYTAIDIVEEP 35 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCceEEecccCCc
Confidence 468899999999999888774 5566667765443
No 231
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=94.84 E-value=0.062 Score=33.53 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=23.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCC
Q 045454 48 VANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVD 84 (133)
Q Consensus 48 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d 84 (133)
+..|+.++|+.|+.+...|.+- ++.+-.+|+.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-----gi~~~~idi~ 33 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-----DIPFTERNIF 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCcEEeecc
Confidence 4578899999999999888765 4444455544
No 232
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=94.82 E-value=0.014 Score=41.23 Aligned_cols=86 Identities=19% Similarity=0.366 Sum_probs=64.4
Q ss_pred CcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEE-eCCCChhhHhhcCCCCccEEEEEeCCeEEEEeeCC-CHHHH
Q 045454 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTV-DVDELPEFSNSWGVTATPTFFFLKDGRQIDKLIGS-NKLEL 121 (133)
Q Consensus 44 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~i-d~d~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l 121 (133)
...+-+.||+.|||..+..+|...-....++.+....+ +...-+...++|++.+.|++++... ....++-|. +...|
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~-t~~~~~~~~r~l~sL 154 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQ-TCPASYRGERDLASL 154 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccccccccHHHHhhcccchhccccccCCcceeecc-ccchhhcccccHHHH
Confidence 56788899999999999999999888888874433333 2335678899999999999887733 333455566 88888
Q ss_pred HHHHHHHHH
Q 045454 122 QRKTAAVSK 130 (133)
Q Consensus 122 ~~~~~~~~~ 130 (133)
.++..++..
T Consensus 155 v~fy~~i~~ 163 (319)
T KOG2640|consen 155 VNFYTEITP 163 (319)
T ss_pred HHHHHhhcc
Confidence 888777653
No 233
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=94.81 E-value=0.11 Score=28.31 Aligned_cols=50 Identities=12% Similarity=0.079 Sum_probs=31.0
Q ss_pred EEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCccEEE
Q 045454 50 NFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFF 102 (133)
Q Consensus 50 ~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~P~~~ 102 (133)
.++.++|++|++.+-.|....-. +....++.+......+..+-..+|++.
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl~---~~~~~~~~~~~~~~~~~~~~~~vP~L~ 52 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNIP---VEQIILQNDDEATPIRMIGAKQVPILE 52 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCCC---eEEEECCCCchHHHHHhcCCCccCEEE
Confidence 46789999999988887765332 233334444333334444556789875
No 234
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=94.79 E-value=0.27 Score=27.37 Aligned_cols=69 Identities=12% Similarity=0.109 Sum_probs=39.5
Q ss_pred EEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCC----hhhHhhcCCCCccEEEEEeCCeEEEEeeCCCHHHHHHH
Q 045454 49 ANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDEL----PEFSNSWGVTATPTFFFLKDGRQIDKLIGSNKLELQRK 124 (133)
Q Consensus 49 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~----~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~~ 124 (133)
..++.++|++|.+.+-.|.... +.+-.++++.. +++.+..+...+|+++.-.+|.. -.+...|.++
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~g-----i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~-----l~es~~I~~y 72 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTELE-----LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQ-----MFESADIVKY 72 (77)
T ss_pred eEecCCCCchHHHHHHHHHHcC-----CcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeE-----EEcHHHHHHH
Confidence 4577889999999888887763 32333344332 33433335678998853223322 2245556665
Q ss_pred HHH
Q 045454 125 TAA 127 (133)
Q Consensus 125 ~~~ 127 (133)
+++
T Consensus 73 L~~ 75 (77)
T cd03041 73 LFK 75 (77)
T ss_pred HHH
Confidence 554
No 235
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=94.06 E-value=0.7 Score=27.40 Aligned_cols=90 Identities=16% Similarity=0.203 Sum_probs=56.4
Q ss_pred EEeechhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhC-CCeEEEEEeCCCChhhHhhcCCCCccEEEE
Q 045454 25 HLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKY-PSMICLTVDVDELPEFSNSWGVTATPTFFF 103 (133)
Q Consensus 25 ~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~-~~v~~~~id~d~~~~~~~~~~v~~~P~~~~ 103 (133)
..+.+.++++..+ ..+++++|-|+..--. .....+.+++..+ .++.|.... ...+...+++ .|++++
T Consensus 3 ~~i~s~~~l~~f~----~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~ivl 70 (104)
T cd03069 3 VELRTEAEFEKFL----SDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVVL 70 (104)
T ss_pred cccCCHHHHHHHh----ccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceEE
Confidence 3455666666655 3567777777665433 3556666777777 457774433 3456778888 677777
Q ss_pred Ee---------CCeEEEEeeCC-CHHHHHHHHHHH
Q 045454 104 LK---------DGRQIDKLIGS-NKLELQRKTAAV 128 (133)
Q Consensus 104 ~~---------~g~~~~~~~g~-~~~~l~~~~~~~ 128 (133)
|+ .+.. .+.|. +.+.|.+|+...
T Consensus 71 ~~p~~~~~k~de~~~--~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 71 FRPPRLSNKFEDSSV--KFDGDLDSSKIKKFIREN 103 (104)
T ss_pred EechhhhcccCcccc--cccCcCCHHHHHHHHHhh
Confidence 72 2222 36676 788899988753
No 236
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=94.02 E-value=0.086 Score=31.57 Aligned_cols=33 Identities=12% Similarity=0.050 Sum_probs=24.6
Q ss_pred EEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCC
Q 045454 49 ANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDEL 86 (133)
Q Consensus 49 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~ 86 (133)
.+|+.++|+.|+.+...|.+- ++.+-.+|..+.
T Consensus 2 ~iy~~~~C~~crka~~~L~~~-----~i~~~~~di~~~ 34 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR-----GVAYTFHDYRKD 34 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCCeEEEecccC
Confidence 578999999999999888765 555555665543
No 237
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=94.01 E-value=0.66 Score=32.37 Aligned_cols=110 Identities=17% Similarity=0.247 Sum_probs=65.5
Q ss_pred ccCcCeEEeechhhHHHHHhhhhhCCcEEEEEEecCCChh-hhhhhHHHHHHHhhC---CCe----EEEEEeCCCC----
Q 045454 19 FASKNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSP-CKKIAPVYIQLADKY---PSM----ICLTVDVDEL---- 86 (133)
Q Consensus 19 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~-C~~~~~~l~~~~~~~---~~v----~~~~id~d~~---- 86 (133)
...+++..+.+.. ....+....++++++||.-+.||+ |-.....|.++-.+. +++ .|+.+|-...
T Consensus 117 ~iGGpF~L~d~~G---k~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~ 193 (280)
T KOG2792|consen 117 AIGGPFSLVDHDG---KRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEV 193 (280)
T ss_pred ccCCceEEEecCC---CeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHH
Confidence 3445655554322 122233357999999999999986 777777777665543 232 4666665221
Q ss_pred ----------------------hhhHhhcCCCCc--c-----------EEEEE---eCCeEEEEeeCC-CHHHHHHHHHH
Q 045454 87 ----------------------PEFSNSWGVTAT--P-----------TFFFL---KDGRQIDKLIGS-NKLELQRKTAA 127 (133)
Q Consensus 87 ----------------------~~~~~~~~v~~~--P-----------~~~~~---~~g~~~~~~~g~-~~~~l~~~~~~ 127 (133)
.+.++.|-|..- | ++++| .+|+.+..+-.. +.+++.+.|.+
T Consensus 194 ~~eY~~eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~ 273 (280)
T KOG2792|consen 194 VAEYVSEFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILK 273 (280)
T ss_pred HHHHHHhcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHH
Confidence 134555543211 1 23333 678888666555 88888888877
Q ss_pred HHHh
Q 045454 128 VSKL 131 (133)
Q Consensus 128 ~~~~ 131 (133)
.+..
T Consensus 274 ~v~~ 277 (280)
T KOG2792|consen 274 HVAS 277 (280)
T ss_pred HHHh
Confidence 6654
No 238
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=93.90 E-value=0.81 Score=27.59 Aligned_cols=86 Identities=15% Similarity=0.228 Sum_probs=63.1
Q ss_pred CcEEEEEEecCCChhhhhhhHHHHHHHhhC---CCeEEEEEeCCCChhhHhhc----CCC-CccEEEEEe---CCeEEEE
Q 045454 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKY---PSMICLTVDVDELPEFSNSW----GVT-ATPTFFFLK---DGRQIDK 112 (133)
Q Consensus 44 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~---~~v~~~~id~d~~~~~~~~~----~v~-~~P~~~~~~---~g~~~~~ 112 (133)
+...++-|--.--+.-.++.+.++++|+.+ ++..|+.||-|+.|-+...+ +|. .-|.+-++. +..+-..
T Consensus 20 ~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadSvW~~ 99 (120)
T cd03074 20 DGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADSVWME 99 (120)
T ss_pred CCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEecccccceeEe
Confidence 567778898999999999999999999987 45999999999999887765 322 248776662 2222222
Q ss_pred ee---C-CCHHHHHHHHHHHH
Q 045454 113 LI---G-SNKLELQRKTAAVS 129 (133)
Q Consensus 113 ~~---g-~~~~~l~~~~~~~~ 129 (133)
.. . .+.++|+.+++.++
T Consensus 100 m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 100 MDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred cccccccCcHHHHHHHHHhhC
Confidence 21 2 37888999988753
No 239
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=93.81 E-value=0.24 Score=26.89 Aligned_cols=52 Identities=13% Similarity=0.149 Sum_probs=34.2
Q ss_pred EEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCC----CChhhHhhcCCCCccEEEE
Q 045454 49 ANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVD----ELPEFSNSWGVTATPTFFF 103 (133)
Q Consensus 49 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d----~~~~~~~~~~v~~~P~~~~ 103 (133)
..|+.++|++|++.+-.+....-.+ ....++.. ..+++.+......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~~---~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGIDV---PLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCCc---eEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 3578899999999999887764333 33334432 2344555556678999874
No 240
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=93.81 E-value=1.4 Score=29.80 Aligned_cols=89 Identities=21% Similarity=0.333 Sum_probs=59.7
Q ss_pred hCCcEEEEEEecCCCh-hhhhhhHHHHHHHhhCC-----CeEEEEEeCCCC---h-------------------------
Q 045454 42 KDGKIVVANFSAQWCS-PCKKIAPVYIQLADKYP-----SMICLTVDVDEL---P------------------------- 87 (133)
Q Consensus 42 ~~~~~~lv~f~~~~C~-~C~~~~~~l~~~~~~~~-----~v~~~~id~d~~---~------------------------- 87 (133)
..+++++|+|.=+.|| -|......|..+.++.. ++.++.|.+|.. +
T Consensus 65 l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~ltg~~~~~ 144 (207)
T COG1999 65 LKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIGLTGTPEQI 144 (207)
T ss_pred cCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeeeeeCCHHHH
Confidence 4899999999989886 58888888888776653 354544444421 1
Q ss_pred -hhHhhcCCCC---------------ccEEEEE-eCCeEEEEeeCC-CHHHHHHHHHHHHH
Q 045454 88 -EFSNSWGVTA---------------TPTFFFL-KDGRQIDKLIGS-NKLELQRKTAAVSK 130 (133)
Q Consensus 88 -~~~~~~~v~~---------------~P~~~~~-~~g~~~~~~~g~-~~~~l~~~~~~~~~ 130 (133)
.++++|++.. ...++++ ++|+....+.+. +++++.+.++.+++
T Consensus 145 ~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~ 205 (207)
T COG1999 145 EEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLK 205 (207)
T ss_pred HHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhh
Confidence 2344444431 1223444 689998888877 77888888887764
No 241
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=93.76 E-value=1.2 Score=30.08 Aligned_cols=79 Identities=25% Similarity=0.475 Sum_probs=50.6
Q ss_pred EEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCC--CC----------------hhhHhhcCCC--CccEEEEEeCC
Q 045454 48 VANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVD--EL----------------PEFSNSWGVT--ATPTFFFLKDG 107 (133)
Q Consensus 48 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d--~~----------------~~~~~~~~v~--~~P~~~~~~~g 107 (133)
|=+|.+..|+.|-.+...|.+++.+- ++.-+...+| +. ....+.++.. ++|.++ -+|
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~~-~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~v--VnG 78 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAARP-DVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVV--VNG 78 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHHT-SSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEE--ETT
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcCC-CEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEE--ECC
Confidence 44688999999999999999999884 7555444443 21 1244455544 578877 567
Q ss_pred eEEEEeeCCCHHHHHHHHHHHHHh
Q 045454 108 RQIDKLIGSNKLELQRKTAAVSKL 131 (133)
Q Consensus 108 ~~~~~~~g~~~~~l~~~~~~~~~~ 131 (133)
+.- ..|.+...+...|.+....
T Consensus 79 ~~~--~~g~~~~~~~~ai~~~~~~ 100 (202)
T PF06764_consen 79 REH--RVGSDRAAVEAAIQAARAR 100 (202)
T ss_dssp TEE--EETT-HHHHHHHHHHHHHT
T ss_pred eee--eeccCHHHHHHHHHHhhcc
Confidence 663 6688989999988877653
No 242
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=93.61 E-value=0.29 Score=26.63 Aligned_cols=51 Identities=14% Similarity=0.104 Sum_probs=32.7
Q ss_pred EEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCC-hhhHhhcCCCCccEEE
Q 045454 49 ANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDEL-PEFSNSWGVTATPTFF 102 (133)
Q Consensus 49 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~-~~~~~~~~v~~~P~~~ 102 (133)
..|+.++|+.|++.+-.++...-. +....++.... +++.+......+|++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~vP~l~ 53 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS---VEIIDVDPDNPPEDLAELNPYGTVPTLV 53 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc---cEEEEcCCCCCCHHHHhhCCCCCCCEEE
Confidence 457889999999998887665333 33334454433 3444545567899774
No 243
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=93.55 E-value=0.51 Score=26.04 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=40.8
Q ss_pred EEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCccEEEEEe--CCeEEEEeeCCCHHHHHHHH
Q 045454 48 VANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFLK--DGRQIDKLIGSNKLELQRKT 125 (133)
Q Consensus 48 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~--~g~~~~~~~g~~~~~l~~~~ 125 (133)
+..|+.++|++|++.+-.|....-.+ .+..++....+++ +.-+...+|++..-. +|..+ .+...+.+++
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~y---~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l-----~eS~~I~~yL 72 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIPY---EVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQL-----VDSSVIISTL 72 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCce---EEEECCchhHHHH-HHhCCCccCEEEECCCCCccEE-----EcHHHHHHHH
Confidence 34688899999999997777653222 2223333222233 334567899887542 23322 1445566666
Q ss_pred HHH
Q 045454 126 AAV 128 (133)
Q Consensus 126 ~~~ 128 (133)
++.
T Consensus 73 ~~~ 75 (77)
T cd03040 73 KTY 75 (77)
T ss_pred HHH
Confidence 554
No 244
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=93.54 E-value=1.1 Score=27.97 Aligned_cols=25 Identities=32% Similarity=0.620 Sum_probs=21.7
Q ss_pred CCChhhHhhcCCCCccEEEEEeCCe
Q 045454 84 DELPEFSNSWGVTATPTFFFLKDGR 108 (133)
Q Consensus 84 d~~~~~~~~~~v~~~P~~~~~~~g~ 108 (133)
.-+|.+.++|+|+.+|++++.+++.
T Consensus 58 ~IdP~lF~~f~I~~VPa~V~~~~~~ 82 (130)
T TIGR02742 58 QIDPQWFKQFDITAVPAFVVVKDGL 82 (130)
T ss_pred EEChHHHhhcCceEcCEEEEECCCC
Confidence 3478999999999999999997764
No 245
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=93.39 E-value=0.22 Score=30.23 Aligned_cols=33 Identities=12% Similarity=0.240 Sum_probs=24.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCC
Q 045454 48 VANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDE 85 (133)
Q Consensus 48 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~ 85 (133)
+.+|+.++|+.|+++...|++. ++.+-.+|..+
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-----gi~~~~idi~~ 34 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-----QIPFEERNLFK 34 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCceEEEecCC
Confidence 3468899999999999888874 44455566544
No 246
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=93.34 E-value=0.59 Score=31.64 Aligned_cols=73 Identities=16% Similarity=0.227 Sum_probs=53.5
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCccEEEEEeCCeEEEEeeCC-CHHHHHHHH
Q 045454 47 VVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFLKDGRQIDKLIGS-NKLELQRKT 125 (133)
Q Consensus 47 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~~ 125 (133)
-+=.|....|..|..+...|+.-. ..+++.| +++...+.+.-+-++-++|.++ .+|+.+ +.++ ++++++..+
T Consensus 12 ~VkI~~HktC~ssy~Lf~~L~nkg-ll~~Vki--i~a~~p~f~~~~~~V~SvP~Vf--~DGel~--~~dpVdp~~ies~~ 84 (265)
T COG5494 12 EVKIFTHKTCVSSYMLFEYLENKG-LLGKVKI--IDAELPPFLAFEKGVISVPSVF--IDGELV--YADPVDPEEIESIL 84 (265)
T ss_pred EEEEEEecchHHHHHHHHHHHhcC-CCCCceE--EEcCCChHHHhhcceeecceEE--EcCeEE--EcCCCCHHHHHHHH
Confidence 344577889999988877776421 1356777 7888888877777899999987 678886 4466 888877766
Q ss_pred H
Q 045454 126 A 126 (133)
Q Consensus 126 ~ 126 (133)
.
T Consensus 85 ~ 85 (265)
T COG5494 85 S 85 (265)
T ss_pred c
Confidence 4
No 247
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=93.32 E-value=0.83 Score=29.70 Aligned_cols=43 Identities=21% Similarity=0.253 Sum_probs=36.9
Q ss_pred hCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC--CeEEEEEeCC
Q 045454 42 KDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP--SMICLTVDVD 84 (133)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~id~d 84 (133)
..++++||.=-|+.|+.-..-...|..+.++|+ ++.++...|.
T Consensus 32 yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCN 76 (171)
T KOG1651|consen 32 YRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCN 76 (171)
T ss_pred hCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccc
Confidence 589999999999999999988889999999884 5777777664
No 248
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=93.10 E-value=0.055 Score=30.99 Aligned_cols=52 Identities=23% Similarity=0.320 Sum_probs=43.6
Q ss_pred EecCCChhhhhhhHHHHHHHhhC-C-CeEEEEEeCCCChhhHhhcCCCCccEEE
Q 045454 51 FSAQWCSPCKKIAPVYIQLADKY-P-SMICLTVDVDELPEFSNSWGVTATPTFF 102 (133)
Q Consensus 51 f~~~~C~~C~~~~~~l~~~~~~~-~-~v~~~~id~d~~~~~~~~~~v~~~P~~~ 102 (133)
|-+..-+.+.++...+..+.+.+ + .+.+-.||+.++|++++.+++-++||++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 44566677788888888887764 3 4888999999999999999999999976
No 249
>PRK12559 transcriptional regulator Spx; Provisional
Probab=93.04 E-value=0.21 Score=31.14 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=18.6
Q ss_pred EEEEecCCChhhhhhhHHHHHH
Q 045454 48 VANFSAQWCSPCKKIAPVYIQL 69 (133)
Q Consensus 48 lv~f~~~~C~~C~~~~~~l~~~ 69 (133)
+.+|+.++|+.|+.+...|.+-
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~ 23 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN 23 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 4578999999999998887764
No 250
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.90 E-value=0.76 Score=33.85 Aligned_cols=80 Identities=18% Similarity=0.309 Sum_probs=59.9
Q ss_pred CCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCccEEEEEeCCeEEEEeeCC-CHHHH
Q 045454 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFLKDGRQIDKLIGS-NKLEL 121 (133)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l 121 (133)
++...+=-|++-.|..|-.....|+-++-..|++.-..||---..+-.+.-+|.++|+++ .+|+... .|. +.+++
T Consensus 115 ~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~Fq~Evear~IMaVPtvf--lnGe~fg--~GRmtleei 190 (520)
T COG3634 115 DGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGALFQDEVEARNIMAVPTVF--LNGEEFG--QGRMTLEEI 190 (520)
T ss_pred CCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchhhHhHHHhccceecceEE--Ecchhhc--ccceeHHHH
Confidence 566777778888999999999999998888899988888866555556677999999988 4565542 244 55555
Q ss_pred HHHHH
Q 045454 122 QRKTA 126 (133)
Q Consensus 122 ~~~~~ 126 (133)
...++
T Consensus 191 laki~ 195 (520)
T COG3634 191 LAKID 195 (520)
T ss_pred HHHhc
Confidence 55444
No 251
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.51 E-value=0.35 Score=33.02 Aligned_cols=38 Identities=24% Similarity=0.403 Sum_probs=31.4
Q ss_pred hHhhcCCCCccEEEEEeCCeEEEEeeCC-CHHHHHHHHHHHHH
Q 045454 89 FSNSWGVTATPTFFFLKDGRQIDKLIGS-NKLELQRKTAAVSK 130 (133)
Q Consensus 89 ~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~~~~~~~ 130 (133)
.+++.||+++|++++ +|+. .+.|. +.+.+.+.|.++++
T Consensus 176 ~A~e~gI~gVP~fv~--d~~~--~V~Gaq~~~v~~~al~~~~~ 214 (225)
T COG2761 176 AAQEMGIRGVPTFVF--DGKY--AVSGAQPYDVLEDALRQLLA 214 (225)
T ss_pred HHHHCCCccCceEEE--cCcE--eecCCCCHHHHHHHHHHHHh
Confidence 578889999999998 4544 57788 99999999998875
No 252
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=92.29 E-value=1.1 Score=24.65 Aligned_cols=69 Identities=14% Similarity=0.133 Sum_probs=45.6
Q ss_pred EEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCC-hhhHhhcCCCCccEEEEEeCCeEEEEeeCCCHHHHHHHHHHH
Q 045454 50 NFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDEL-PEFSNSWGVTATPTFFFLKDGRQIDKLIGSNKLELQRKTAAV 128 (133)
Q Consensus 50 ~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~-~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~~~~~~ 128 (133)
.++.++|++|++.+-.++...- .+.+..++..+. +.+.+......+|++. .+|..+. +...|.+++++.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i---~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l~-----dS~~I~~yL~~~ 70 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGI---PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVLT-----DSAAIIEYLEER 70 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTE---EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEEE-----SHHHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCC---eEEEeccCcccchhHHHhhcccccceEEE--ECCEEEe-----CHHHHHHHHHHH
Confidence 3678999999999888776632 245555555543 4555565677899998 5576442 455666666554
No 253
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=91.82 E-value=3 Score=28.71 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=35.7
Q ss_pred hCCcEEEEEEecCCChhhhhhhHHHHHHHhh-----CCCeEEEEEeCC
Q 045454 42 KDGKIVVANFSAQWCSPCKKIAPVYIQLADK-----YPSMICLTVDVD 84 (133)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~-----~~~v~~~~id~d 84 (133)
..++++||-+-..+|..|..-...|+.|..+ ++++.|+.||-.
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 3689999999999999999988888877644 357999999864
No 254
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.67 E-value=1.8 Score=25.76 Aligned_cols=75 Identities=17% Similarity=0.218 Sum_probs=47.9
Q ss_pred HHHHHhhhhhCCcEEEEEEecC---CChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcC-CCCccEEE-EEeCC
Q 045454 33 WEAKVSESIKDGKIVVANFSAQ---WCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWG-VTATPTFF-FLKDG 107 (133)
Q Consensus 33 ~~~~~~~~~~~~~~~lv~f~~~---~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~-v~~~P~~~-~~~~g 107 (133)
..+.++....++++++.+=.+| -|+.+.++...|.... -+.|..+|+=+++++.+.+. ...+||+= +|-+|
T Consensus 4 i~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g----~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~G 79 (105)
T COG0278 4 ILDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACG----VVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNG 79 (105)
T ss_pred HHHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcC----CcceeEEeeccCHHHHhccHhhcCCCCCceeeECC
Confidence 3455565556777777666665 5666666655555442 17888999988888866663 44566653 44778
Q ss_pred eEEE
Q 045454 108 RQID 111 (133)
Q Consensus 108 ~~~~ 111 (133)
+.+.
T Consensus 80 EfvG 83 (105)
T COG0278 80 EFVG 83 (105)
T ss_pred EEec
Confidence 6654
No 255
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=91.60 E-value=0.67 Score=25.22 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=34.2
Q ss_pred EEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCC----ChhhHhhcCCCCccEEE
Q 045454 49 ANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDE----LPEFSNSWGVTATPTFF 102 (133)
Q Consensus 49 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~----~~~~~~~~~v~~~P~~~ 102 (133)
..|+.++|+.|++.+-.+...... +....++..+ .+++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~---~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLE---LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCC---CEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 358899999999888888776433 3444455432 24555555567899996
No 256
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=91.41 E-value=0.84 Score=31.38 Aligned_cols=82 Identities=23% Similarity=0.300 Sum_probs=57.3
Q ss_pred cEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEE--EEEeCCC----------------ChhhHhhcCCCCccEEEEEeC
Q 045454 45 KIVVANFSAQWCSPCKKIAPVYIQLADKYPSMIC--LTVDVDE----------------LPEFSNSWGVTATPTFFFLKD 106 (133)
Q Consensus 45 ~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~--~~id~d~----------------~~~~~~~~~v~~~P~~~~~~~ 106 (133)
..+|=.|.+..|..|--....|.+++.+= ++.- +.+|-.+ ...+.+.|+.++++|=..+-+
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~~~-~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvn 120 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLADDP-GVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVN 120 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhccCC-CEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheee
Confidence 45666777889999999999999887654 3322 4455322 234677778887766555567
Q ss_pred CeEEEEeeCCCHHHHHHHHHHHH
Q 045454 107 GRQIDKLIGSNKLELQRKTAAVS 129 (133)
Q Consensus 107 g~~~~~~~g~~~~~l~~~~~~~~ 129 (133)
|+.. ..|.+...+++.|....
T Consensus 121 Gr~~--~~Gad~~~i~~~i~a~~ 141 (261)
T COG5429 121 GRVH--ANGADPGAIEDAIAAMA 141 (261)
T ss_pred chhh--hcCCCHHHHHHHHHHhh
Confidence 8763 55789999998888764
No 257
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=91.38 E-value=0.45 Score=29.75 Aligned_cols=32 Identities=13% Similarity=0.276 Sum_probs=22.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCC
Q 045454 48 VANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVD 84 (133)
Q Consensus 48 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d 84 (133)
+..|+.++|+.|+.+...|.+- ++.+-.+|..
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----~i~~~~~d~~ 33 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH-----QLSYKEQNLG 33 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-----CCCeEEEECC
Confidence 4568899999999988777653 4444445543
No 258
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=91.06 E-value=1.3 Score=28.86 Aligned_cols=44 Identities=23% Similarity=0.350 Sum_probs=32.1
Q ss_pred hCCcEEEEEEecCCC-hhhhhhhHHHHHHHhhC----CCeEEEEEeCCC
Q 045454 42 KDGKIVVANFSAQWC-SPCKKIAPVYIQLADKY----PSMICLTVDVDE 85 (133)
Q Consensus 42 ~~~~~~lv~f~~~~C-~~C~~~~~~l~~~~~~~----~~v~~~~id~d~ 85 (133)
..+++++|.|.-+.| ..|-.....|.++.+.+ .++.++.|.+|.
T Consensus 50 ~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP 98 (174)
T PF02630_consen 50 LKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDP 98 (174)
T ss_dssp GTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESST
T ss_pred hCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCC
Confidence 479999999999999 46887777777665543 357777777764
No 259
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=90.69 E-value=0.65 Score=30.42 Aligned_cols=32 Identities=22% Similarity=0.371 Sum_probs=24.4
Q ss_pred EEecCCChhhhhhhHHHHHHHhhCCC-eEEEEE
Q 045454 50 NFSAQWCSPCKKIAPVYIQLADKYPS-MICLTV 81 (133)
Q Consensus 50 ~f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~i 81 (133)
+|.-|.|+.|-.+.|.+.++..++++ +.+-.+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEE
Confidence 58899999999999999999999975 544444
No 260
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=90.67 E-value=2.5 Score=25.63 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=38.9
Q ss_pred hhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCccEEEEEeC
Q 045454 31 VSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFLKD 106 (133)
Q Consensus 31 ~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~ 106 (133)
..+.+.+.++... +.++|.=+-..- .+.+.+..+.+....-.-. .+..-+|.+.++|+|+.+|++++.++
T Consensus 11 ~~L~~l~~~a~~~-~~~~V~RG~~~g----~~~~t~~~~~~l~~~~~~~-~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 11 ASLRNLLKQAERA-GVVVVFRGFPDG----SFKPTAKAIQELLRKDDPC-PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred HHHHHHHHHHHhC-CcEEEEECCCCC----CHHHHHHHHHHHhhccCCC-cceeEChhHHhhCCceEcCEEEEEcC
Confidence 3455555554223 333333222222 5555555554444211000 33344788899999999999999876
No 261
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=89.97 E-value=1.7 Score=24.89 Aligned_cols=53 Identities=9% Similarity=0.154 Sum_probs=34.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCC-hhhHhhcCCCCccEEEE
Q 045454 48 VANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDEL-PEFSNSWGVTATPTFFF 103 (133)
Q Consensus 48 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~-~~~~~~~~v~~~P~~~~ 103 (133)
+..|+.+.|++|.+.+-.+...... +.+..++.... +.+.+......+|.+..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl~---~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNIP---HEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCC---CeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 3456788899999888777765333 34445555443 33445556778999873
No 262
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=88.69 E-value=4.4 Score=25.66 Aligned_cols=74 Identities=15% Similarity=0.201 Sum_probs=52.4
Q ss_pred CcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCC----ccEEEEEeCCeEEEEeeCC-CH
Q 045454 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTA----TPTFFFLKDGRQIDKLIGS-NK 118 (133)
Q Consensus 44 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~----~P~~~~~~~g~~~~~~~g~-~~ 118 (133)
...-++.+++|.|+=|......|+. .++.+-....++-..+-++++|.. -=|.+ .+|.. +.|. ..
T Consensus 24 ~~~~~~vyksPnCGCC~~w~~~mk~-----~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~V--I~Gy~---vEGHVPa 93 (149)
T COG3019 24 QATEMVVYKSPNCGCCDEWAQHMKA-----NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAV--INGYY---VEGHVPA 93 (149)
T ss_pred ceeeEEEEeCCCCccHHHHHHHHHh-----CCcEEEEeecCcHHHHHHhcCCChhhccccEEE--EcCEE---EeccCCH
Confidence 4455678899999999988877762 477777788888888888888763 22333 45755 3455 66
Q ss_pred HHHHHHHHH
Q 045454 119 LELQRKTAA 127 (133)
Q Consensus 119 ~~l~~~~~~ 127 (133)
+.+..++++
T Consensus 94 ~aI~~ll~~ 102 (149)
T COG3019 94 EAIARLLAE 102 (149)
T ss_pred HHHHHHHhC
Confidence 777766653
No 263
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=88.37 E-value=5.1 Score=25.95 Aligned_cols=87 Identities=20% Similarity=0.281 Sum_probs=52.8
Q ss_pred CCcEEEEEEecCCChhhhhhhHHHHHHHhh-CCC--e-EEEEEeCC-----------------------------CChhh
Q 045454 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADK-YPS--M-ICLTVDVD-----------------------------ELPEF 89 (133)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~-~~~--v-~~~~id~d-----------------------------~~~~~ 89 (133)
.+|+.+|..-|-.-..=..-.|++..+... ++. + ...-||.| .+...
T Consensus 36 ~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~p~s~~vlD~~G~~ 115 (160)
T PF09695_consen 36 PGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLDDAIWGTGGFVRSSAEDSKKEFPWSQFVLDSNGVV 115 (160)
T ss_pred CCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEEecccccccchHHHHHHHHHhhhhCCCcEEEEcCCCce
Confidence 567777666555555555666777777654 442 1 12223433 23334
Q ss_pred HhhcCCCCc-cEEEEE-eCCeEEEEeeCC-CHHHHHHHHHHHH
Q 045454 90 SNSWGVTAT-PTFFFL-KDGRQIDKLIGS-NKLELQRKTAAVS 129 (133)
Q Consensus 90 ~~~~~v~~~-P~~~~~-~~g~~~~~~~g~-~~~~l~~~~~~~~ 129 (133)
...|+...- -.++++ ++|++.....|. +..++.+.+.-+.
T Consensus 116 ~~aW~L~~~~SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~Ll~ 158 (160)
T PF09695_consen 116 RKAWQLQEESSAIIVLDKQGKVQFVKEGALSPAEVQQVIALLK 158 (160)
T ss_pred eccccCCCCCceEEEEcCCccEEEEECCCCCHHHHHHHHHHHh
Confidence 444544432 234455 899999999999 9999998877553
No 264
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=88.02 E-value=0.91 Score=30.42 Aligned_cols=41 Identities=15% Similarity=0.146 Sum_probs=29.4
Q ss_pred hhHhhcCCCCccEEEEEeCCeEEEEeeCC---CHHHHHHHHHHH
Q 045454 88 EFSNSWGVTATPTFFFLKDGRQIDKLIGS---NKLELQRKTAAV 128 (133)
Q Consensus 88 ~~~~~~~v~~~P~~~~~~~g~~~~~~~g~---~~~~l~~~~~~~ 128 (133)
.+++++++.++||+.+-++|+.--.-.|. +.+.+...+.+.
T Consensus 165 ~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~ 208 (212)
T COG3531 165 RLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQR 208 (212)
T ss_pred HHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHH
Confidence 47889999999999999999876554552 445555555443
No 265
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=86.00 E-value=8.2 Score=25.86 Aligned_cols=85 Identities=25% Similarity=0.355 Sum_probs=56.0
Q ss_pred CcEEEEEEe-cCCChhhhhhhHHHHHHHhhCC--CeEEEEEeCCC----------------------------ChhhHhh
Q 045454 44 GKIVVANFS-AQWCSPCKKIAPVYIQLADKYP--SMICLTVDVDE----------------------------LPEFSNS 92 (133)
Q Consensus 44 ~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~id~d~----------------------------~~~~~~~ 92 (133)
++.+++.|| ++.-+-|-.....+.+...++. ++.++.+.+|. ..++++.
T Consensus 33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ 112 (194)
T COG0450 33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARA 112 (194)
T ss_pred CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHH
Confidence 488888888 7788888777777777766653 56666666543 4467888
Q ss_pred cCCCCcc------EEEEE-eCCeEEEEee-----CCCHHHHHHHHHHH
Q 045454 93 WGVTATP------TFFFL-KDGRQIDKLI-----GSNKLELQRKTAAV 128 (133)
Q Consensus 93 ~~v~~~P------~~~~~-~~g~~~~~~~-----g~~~~~l~~~~~~~ 128 (133)
||+-.-. .++++ ++|.+..... |.+..++.+.++.+
T Consensus 113 ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAl 160 (194)
T COG0450 113 YGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDAL 160 (194)
T ss_pred cCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHH
Confidence 8865321 24444 7787665444 44677777777655
No 266
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=85.84 E-value=3.8 Score=24.72 Aligned_cols=43 Identities=21% Similarity=0.260 Sum_probs=37.6
Q ss_pred hCCcEEEEEEecCCChhhhhhhHHHHHHHhhCC--CeEEEEEeCCC
Q 045454 42 KDGKIVVANFSAQWCSPCKKIAPVYIQLADKYP--SMICLTVDVDE 85 (133)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~id~d~ 85 (133)
.+++++||.=.|+.|+.-. ....|+++.++|+ ++.++...+.+
T Consensus 19 y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 19 YKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp GTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred cCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 5799999999999999999 8889999999985 68888888764
No 267
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=84.83 E-value=1.9 Score=28.37 Aligned_cols=34 Identities=18% Similarity=0.393 Sum_probs=25.2
Q ss_pred hhHhhcCCCCccEEEEEeCCeEEEEeeCC-CHHHHHHHH
Q 045454 88 EFSNSWGVTATPTFFFLKDGRQIDKLIGS-NKLELQRKT 125 (133)
Q Consensus 88 ~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~~ 125 (133)
....++|+.++|++++ +|+. ...|. +.+.+.+.|
T Consensus 166 ~~a~~~gv~G~Pt~vv--~g~~--~~~G~~~~~~~~~~i 200 (201)
T cd03024 166 ARARQLGISGVPFFVF--NGKY--AVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHCCCCcCCEEEE--CCeE--eecCCCCHHHHHHHh
Confidence 4566789999999986 5653 36788 887777665
No 268
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=83.80 E-value=8.1 Score=23.93 Aligned_cols=54 Identities=15% Similarity=0.112 Sum_probs=33.9
Q ss_pred CCeEEEEEeCCCChh----------hHhhcCCCCccEEEEEeCCeEEEEeeCCCHHHHHHHHHHHH
Q 045454 74 PSMICLTVDVDELPE----------FSNSWGVTATPTFFFLKDGRQIDKLIGSNKLELQRKTAAVS 129 (133)
Q Consensus 74 ~~v~~~~id~d~~~~----------~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~~~~~~~ 129 (133)
.++.+.+.+..++|. +++.-|...+|-++ -+|+++..-.-++.++|.+|+.--.
T Consensus 39 ~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitl--VdGeiv~~G~YPt~eEl~~~~~i~~ 102 (123)
T PF06953_consen 39 QGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITL--VDGEIVKTGRYPTNEELAEWLGISF 102 (123)
T ss_dssp TT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEE--ETTEEEEESS---HHHHHHHHT--G
T ss_pred CCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEE--ECCEEEEecCCCCHHHHHHHhCCCc
Confidence 479999999987763 45555888999888 5688875533339999999876443
No 269
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=82.95 E-value=5.1 Score=23.34 Aligned_cols=66 Identities=17% Similarity=0.217 Sum_probs=40.8
Q ss_pred cCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChh-hHhhcCCCCccEEEEEeCCeEEEEeeCCCHHHHHHHHHHH
Q 045454 53 AQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPE-FSNSWGVTATPTFFFLKDGRQIDKLIGSNKLELQRKTAAV 128 (133)
Q Consensus 53 ~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~-~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~~~~~~ 128 (133)
..+|++|++.+-.|....- .+.+..+|..+.++ +.+..-...+|++. .+|..+ .+...+.+.+++.
T Consensus 19 ~g~cpf~~rvrl~L~eKgi---~ye~~~vd~~~~p~~~~~~nP~g~vPvL~--~~~~~i-----~eS~~I~eYLde~ 85 (91)
T cd03061 19 IGNCPFCQRLFMVLWLKGV---VFNVTTVDMKRKPEDLKDLAPGTQPPFLL--YNGEVK-----TDNNKIEEFLEET 85 (91)
T ss_pred CCCChhHHHHHHHHHHCCC---ceEEEEeCCCCCCHHHHHhCCCCCCCEEE--ECCEEe-----cCHHHHHHHHHHH
Confidence 3689999998877766521 24556677666554 44444567799665 445432 3556666666654
No 270
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=82.86 E-value=1.8 Score=26.30 Aligned_cols=22 Identities=5% Similarity=0.120 Sum_probs=18.1
Q ss_pred EEEEecCCChhhhhhhHHHHHH
Q 045454 48 VANFSAQWCSPCKKIAPVYIQL 69 (133)
Q Consensus 48 lv~f~~~~C~~C~~~~~~l~~~ 69 (133)
+..|+.+.|+.|+.+...|++-
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~ 23 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA 23 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc
Confidence 3468899999999998888754
No 271
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=82.83 E-value=2.1 Score=27.86 Aligned_cols=33 Identities=30% Similarity=0.375 Sum_probs=23.2
Q ss_pred hhHhhcCCCCccEEEEEeCCeEEEEeeCC-CHHHHHHHH
Q 045454 88 EFSNSWGVTATPTFFFLKDGRQIDKLIGS-NKLELQRKT 125 (133)
Q Consensus 88 ~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~~ 125 (133)
....++|+.++|++++ +|+ .+.|. ..+.+.+.+
T Consensus 158 ~~a~~~gi~gvPtfvv--~g~---~~~G~~~l~~~~~~l 191 (192)
T cd03022 158 EEAIARGVFGVPTFVV--DGE---MFWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHcCCCcCCeEEE--CCe---eecccccHHHHHHHh
Confidence 4567789999999996 575 45677 655555543
No 272
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=82.83 E-value=3 Score=28.14 Aligned_cols=34 Identities=15% Similarity=0.342 Sum_probs=24.9
Q ss_pred ChhhHhhcCCCCccEEEEEeCCeEEEEeeCC-CHHH
Q 045454 86 LPEFSNSWGVTATPTFFFLKDGRQIDKLIGS-NKLE 120 (133)
Q Consensus 86 ~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~ 120 (133)
+|.++++|+|..+|++++... .....+.|. +...
T Consensus 151 DP~lF~~F~I~~VPafVv~C~-~~yD~I~GNIsl~~ 185 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFCS-QGYDIIRGNLRVGQ 185 (212)
T ss_pred CHHHHHhcCCccccEEEEEcC-CCCCEEEecccHHH
Confidence 788999999999999998743 333456666 5443
No 273
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=82.51 E-value=5.6 Score=21.21 Aligned_cols=55 Identities=22% Similarity=0.265 Sum_probs=34.2
Q ss_pred EEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCC----ChhhHhhcCCCCccEEEEEeCCeE
Q 045454 50 NFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDE----LPEFSNSWGVTATPTFFFLKDGRQ 109 (133)
Q Consensus 50 ~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~----~~~~~~~~~v~~~P~~~~~~~g~~ 109 (133)
.|+.+.|+.|.+.+-.+...... +....++... .+.+.+......+|++.. +|..
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~ 61 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALLGIP---YEWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGRV 61 (73)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC---cEEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCEE
Confidence 57789999999888877765433 3344455422 234444445667999873 4544
No 274
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=82.36 E-value=2.6 Score=24.11 Aligned_cols=33 Identities=15% Similarity=0.412 Sum_probs=27.3
Q ss_pred ccEEEEEeCCeEEEEeeCC-CHHHHHHHHHHHHHhh
Q 045454 98 TPTFFFLKDGRQIDKLIGS-NKLELQRKTAAVSKLL 132 (133)
Q Consensus 98 ~P~~~~~~~g~~~~~~~g~-~~~~l~~~~~~~~~~~ 132 (133)
-.++.+|..|+++ ..|. +.+++...++++...|
T Consensus 49 ~~t~~IF~sGki~--itGaks~~~~~~a~~~i~~~L 82 (86)
T PF00352_consen 49 KATVLIFSSGKIV--ITGAKSEEEAKKAIEKILPIL 82 (86)
T ss_dssp TEEEEEETTSEEE--EEEESSHHHHHHHHHHHHHHH
T ss_pred cEEEEEEcCCEEE--EEecCCHHHHHHHHHHHHHHH
Confidence 4678888999996 5588 9999999999887765
No 275
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=81.53 E-value=6.7 Score=21.43 Aligned_cols=56 Identities=11% Similarity=0.000 Sum_probs=35.1
Q ss_pred EEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCC----ChhhHhhcCCCCccEEEEEeCCeE
Q 045454 49 ANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDE----LPEFSNSWGVTATPTFFFLKDGRQ 109 (133)
Q Consensus 49 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~----~~~~~~~~~v~~~P~~~~~~~g~~ 109 (133)
..|+.+.|+.|++.+-.+..... .+.+..++... .+++.+......+|++. .+|..
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl---~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~~ 61 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGL---RCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDNI 61 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCC---CCEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCEE
Confidence 35778899999888766655533 24455555532 23455555567799986 46654
No 276
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=81.13 E-value=10 Score=23.15 Aligned_cols=78 Identities=10% Similarity=0.028 Sum_probs=49.1
Q ss_pred EecC--CChhhhhhhHHHHHHHhhCC--CeEEEEE-eCCCCh-----------hhHhhcCCCCcc-EEEEE-eCCeEEEE
Q 045454 51 FSAQ--WCSPCKKIAPVYIQLADKYP--SMICLTV-DVDELP-----------EFSNSWGVTATP-TFFFL-KDGRQIDK 112 (133)
Q Consensus 51 f~~~--~C~~C~~~~~~l~~~~~~~~--~v~~~~i-d~d~~~-----------~~~~~~~v~~~P-~~~~~-~~g~~~~~ 112 (133)
++|| .-+.=+.....|..-...+. ++.++.+ +-.... .+.++|++..-. +++++ ++|++..+
T Consensus 15 v~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~r 94 (118)
T PF13778_consen 15 VFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDGGVKLR 94 (118)
T ss_pred EECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCCcEEEe
Confidence 4454 45556666677766444443 3555544 222222 677888865322 34555 89999989
Q ss_pred eeCC-CHHHHHHHHHHH
Q 045454 113 LIGS-NKLELQRKTAAV 128 (133)
Q Consensus 113 ~~g~-~~~~l~~~~~~~ 128 (133)
...+ +.++|-+.|+.+
T Consensus 95 ~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 95 WPEPIDPEELFDTIDAM 111 (118)
T ss_pred cCCCCCHHHHHHHHhCC
Confidence 8888 999998888754
No 277
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=80.99 E-value=2.8 Score=25.44 Aligned_cols=51 Identities=16% Similarity=0.285 Sum_probs=37.8
Q ss_pred CChhhhhhhHHHHHHHhhCCCeEEEEEeCCCCh-hhHhhcC--CCCccEEEEEe
Q 045454 55 WCSPCKKIAPVYIQLADKYPSMICLTVDVDELP-EFSNSWG--VTATPTFFFLK 105 (133)
Q Consensus 55 ~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~-~~~~~~~--v~~~P~~~~~~ 105 (133)
.|++|..+...|..+...-..+.+.+|+.-.-. .+....| .++.|++++=.
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~ 76 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLAD 76 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCC
Confidence 499999999888877665566888888887654 4455554 67899988763
No 278
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=80.74 E-value=3.8 Score=26.68 Aligned_cols=27 Identities=22% Similarity=0.498 Sum_probs=24.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHhhCC
Q 045454 48 VANFSAQWCSPCKKIAPVYIQLADKYP 74 (133)
Q Consensus 48 lv~f~~~~C~~C~~~~~~l~~~~~~~~ 74 (133)
+.+|+-+.||+|-...+.|.++.++++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 567889999999999999999999883
No 279
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=80.31 E-value=21 Score=26.35 Aligned_cols=88 Identities=17% Similarity=0.235 Sum_probs=57.0
Q ss_pred CCcEEEEEEecCCChhhhhhhHHHHHHHhhC---CCeEEEEEeCCCChhhHhhc----CCC-CccEEEEEe--CC-eEEE
Q 045454 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKY---PSMICLTVDVDELPEFSNSW----GVT-ATPTFFFLK--DG-RQID 111 (133)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~---~~v~~~~id~d~~~~~~~~~----~v~-~~P~~~~~~--~g-~~~~ 111 (133)
-+...+|-|--.--|.-.++...|+++++.+ ++..++.||-|+.|-+...| +|. .-|.+-++. +. .+..
T Consensus 267 ~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~Idl~~PqIGvVnvtdadsvW~ 346 (383)
T PF01216_consen 267 IDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGIDLSRPQIGVVNVTDADSVWM 346 (383)
T ss_dssp SSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT-TTS-EEEEEETTTSEEEEC
T ss_pred CCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCccccCCceeEEeccccccchh
Confidence 3677778888889999999999999999876 46899999999999887766 332 249888772 21 2222
Q ss_pred EeeC----CCHHHHHHHHHHHHH
Q 045454 112 KLIG----SNKLELQRKTAAVSK 130 (133)
Q Consensus 112 ~~~g----~~~~~l~~~~~~~~~ 130 (133)
...+ ++.++|+.|++.++.
T Consensus 347 dm~d~~d~pt~~~LedWieDVls 369 (383)
T PF01216_consen 347 DMDDDDDLPTAEELEDWIEDVLS 369 (383)
T ss_dssp -STTTSS---HHHHHHHHHHHHC
T ss_pred ccCCcccCCcHHHHHHHHHHHhc
Confidence 2221 278899999998763
No 280
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=80.15 E-value=6.1 Score=23.03 Aligned_cols=36 Identities=17% Similarity=0.157 Sum_probs=23.2
Q ss_pred CCeEEEEEeCCCChhhHhhc--------CCCCccEEEEEeCCeEEE
Q 045454 74 PSMICLTVDVDELPEFSNSW--------GVTATPTFFFLKDGRQID 111 (133)
Q Consensus 74 ~~v~~~~id~d~~~~~~~~~--------~v~~~P~~~~~~~g~~~~ 111 (133)
.++.|-.+|++.+++..+.+ +-..+|.++ .+|+.+.
T Consensus 29 k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIF--i~~~~iG 72 (92)
T cd03030 29 KKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIF--NGDEYCG 72 (92)
T ss_pred CCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEE--ECCEEee
Confidence 37889999998777643332 235678777 4555543
No 281
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=79.85 E-value=10 Score=22.56 Aligned_cols=93 Identities=11% Similarity=0.068 Sum_probs=52.6
Q ss_pred eEEeechhhHHHHHhhhhhCC-cEEEEEEecCCChhhhhhhHHHHHHHhhC-CCeEEEEEeCCCChhhHhhcCCCCccEE
Q 045454 24 VHLITTMVSWEAKVSESIKDG-KIVVANFSAQWCSPCKKIAPVYIQLADKY-PSMICLTVDVDELPEFSNSWGVTATPTF 101 (133)
Q Consensus 24 ~~~i~~~~~~~~~~~~~~~~~-~~~lv~f~~~~C~~C~~~~~~l~~~~~~~-~~v~~~~id~d~~~~~~~~~~v~~~P~~ 101 (133)
+..+.+.++++..+. .. +.++|-|+..--+ .....+.+++..+ .++.|.... +..+..++++.. |.+
T Consensus 2 v~~i~s~~ele~f~~----~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~~-~~v 70 (107)
T cd03068 2 SKQLQTLKQVQEFLR----DGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---DSEIFKSLKVSP-GQL 70 (107)
T ss_pred ceEcCCHHHHHHHHh----cCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---hHHHHHhcCCCC-Cce
Confidence 456667777776653 34 6666666655433 3455666777777 457774433 346667777764 556
Q ss_pred EEEe---------CCeEEEEee-CCCHHHHHHHHHH
Q 045454 102 FFLK---------DGRQIDKLI-GSNKLELQRKTAA 127 (133)
Q Consensus 102 ~~~~---------~g~~~~~~~-g~~~~~l~~~~~~ 127 (133)
++++ .+...+.-. +....+|.+|+++
T Consensus 71 vl~rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 71 VVFQPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred EEECcHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 6552 333332211 2233448888764
No 282
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=78.72 E-value=3.4 Score=24.68 Aligned_cols=57 Identities=12% Similarity=0.291 Sum_probs=37.0
Q ss_pred EecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCC--CccEEEE-EeCCe
Q 045454 51 FSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVT--ATPTFFF-LKDGR 108 (133)
Q Consensus 51 f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~--~~P~~~~-~~~g~ 108 (133)
||-.+||-|......+.+.. ....+.|+.+.......+.+.+++. ...+.+. ..+|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRD-RGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcC-CCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 78889999999999998882 2335777555334444455667655 3444444 46776
No 283
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=78.42 E-value=3.6 Score=24.89 Aligned_cols=31 Identities=10% Similarity=0.075 Sum_probs=22.8
Q ss_pred EEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCC
Q 045454 49 ANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVD 84 (133)
Q Consensus 49 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d 84 (133)
..|+.+.|..|+++...|++- ++.+..+|.-
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~ 32 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK-----GIEPEVVKYL 32 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEecc
Confidence 468899999999999888764 4444445543
No 284
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=78.01 E-value=6.2 Score=25.96 Aligned_cols=33 Identities=15% Similarity=0.399 Sum_probs=27.4
Q ss_pred cEEEEEeCCeEEEEeeCC-CHHHHHHHHHHHHHhhC
Q 045454 99 PTFFFLKDGRQIDKLIGS-NKLELQRKTAAVSKLLR 133 (133)
Q Consensus 99 P~~~~~~~g~~~~~~~g~-~~~~l~~~~~~~~~~~~ 133 (133)
+++++|+.|+++ ..|. +.+++...++.+.+.|+
T Consensus 54 ~a~LIF~SGK~V--cTGaKs~ed~~~av~~~~~~L~ 87 (185)
T COG2101 54 TAALIFRSGKVV--CTGAKSVEDVHRAVKKLAKKLK 87 (185)
T ss_pred ceEEEEecCcEE--EeccCcHHHHHHHHHHHHHHHH
Confidence 367778999997 5588 99999999999988764
No 285
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=76.72 E-value=4.3 Score=24.42 Aligned_cols=31 Identities=10% Similarity=0.109 Sum_probs=22.1
Q ss_pred EEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCC
Q 045454 49 ANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVD 84 (133)
Q Consensus 49 v~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d 84 (133)
..|+.+.|..|+++...|++- ++.+..+|.-
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~ 32 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA-----GIEPEIVEYL 32 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEecc
Confidence 468899999999998777654 4444445543
No 286
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=76.56 E-value=9.9 Score=20.53 Aligned_cols=57 Identities=11% Similarity=0.107 Sum_probs=34.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCC----CChhhHhhcCCCCccEEEEEeCCeE
Q 045454 48 VANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVD----ELPEFSNSWGVTATPTFFFLKDGRQ 109 (133)
Q Consensus 48 lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d----~~~~~~~~~~v~~~P~~~~~~~g~~ 109 (133)
+-.|+.+.|+.|.+.+-.+...... +....++.. ..+.+.+......+|++. .+|..
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~--~~g~~ 62 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVD---YELVPVDLTKGEHKSPEHLARNPFGQIPALE--DGDLK 62 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCC---cEEEEeCccccccCCHHHHhhCCCCCCCEEE--ECCEE
Confidence 3456677799999988877776433 334444442 124455555677899875 34543
No 287
>PLN00062 TATA-box-binding protein; Provisional
Probab=75.93 E-value=13 Score=24.66 Aligned_cols=49 Identities=6% Similarity=0.165 Sum_probs=31.9
Q ss_pred EeCCCChhhHhhcCCCCccEEEEEeCCeEEEEeeCC-CHHHHHHHHHHHHHhh
Q 045454 81 VDVDELPEFSNSWGVTATPTFFFLKDGRQIDKLIGS-NKLELQRKTAAVSKLL 132 (133)
Q Consensus 81 id~d~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~~~~~~~~~ 132 (133)
.+-+..|.+.=++.-. -.++.+|..|+++ ..|. +.+++...++++.+.|
T Consensus 31 YePe~fpgli~Rl~~P-k~t~lIF~SGKiv--iTGaks~e~a~~a~~~~~~~L 80 (179)
T PLN00062 31 YNPKRFAAVIMRIREP-KTTALIFASGKMV--CTGAKSEHDSKLAARKYARII 80 (179)
T ss_pred ECCccCcEEEEEeCCC-cEEEEEECCCeEE--EEecCCHHHHHHHHHHHHHHH
Confidence 3444444443333211 2478888999997 5588 9999988888887655
No 288
>PRK00394 transcription factor; Reviewed
Probab=74.61 E-value=15 Score=24.31 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=26.6
Q ss_pred cEEEEEeCCeEEEEeeCC-CHHHHHHHHHHHHHhh
Q 045454 99 PTFFFLKDGRQIDKLIGS-NKLELQRKTAAVSKLL 132 (133)
Q Consensus 99 P~~~~~~~g~~~~~~~g~-~~~~l~~~~~~~~~~~ 132 (133)
.++.+|..|+++ ..|. +.+++...++++.+.+
T Consensus 47 ~t~lIf~sGKiv--~tGa~S~~~a~~a~~~~~~~l 79 (179)
T PRK00394 47 IAALIFRSGKVV--CTGAKSVEDLHEAVKIIIKKL 79 (179)
T ss_pred eEEEEEcCCcEE--EEccCCHHHHHHHHHHHHHHH
Confidence 678888999997 5587 9999999988887755
No 289
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=74.52 E-value=2.9 Score=27.38 Aligned_cols=18 Identities=22% Similarity=0.571 Sum_probs=14.5
Q ss_pred hhHhhcCCCCccEEEEEe
Q 045454 88 EFSNSWGVTATPTFFFLK 105 (133)
Q Consensus 88 ~~~~~~~v~~~P~~~~~~ 105 (133)
.++++++|+++||++++.
T Consensus 138 ~la~~m~I~~~Ptlvi~~ 155 (176)
T PF13743_consen 138 QLAREMGITGFPTLVIFN 155 (176)
T ss_dssp HHHHHTT-SSSSEEEEE-
T ss_pred HHHHHcCCCCCCEEEEEe
Confidence 578889999999999995
No 290
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=73.10 E-value=20 Score=26.30 Aligned_cols=77 Identities=13% Similarity=0.121 Sum_probs=49.8
Q ss_pred CChhhhhhh----HHHHHHHhhCC----CeEEEEEeCCCCh---hhHhhcCCCC--ccEEEEEeCCeEEEEeeCC-CHHH
Q 045454 55 WCSPCKKIA----PVYIQLADKYP----SMICLTVDVDELP---EFSNSWGVTA--TPTFFFLKDGRQIDKLIGS-NKLE 120 (133)
Q Consensus 55 ~C~~C~~~~----~~l~~~~~~~~----~v~~~~id~d~~~---~~~~~~~v~~--~P~~~~~~~g~~~~~~~g~-~~~~ 120 (133)
.||.|-+.. ..++++.+++. .+.+..+-|--|. ..-..+|+.+ -|...+|.+|+.+.++.+. -.++
T Consensus 263 aCP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~ee 342 (361)
T COG0821 263 ACPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEEDIVEE 342 (361)
T ss_pred ECCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChhhHHHH
Confidence 488886653 33344444442 2566656654321 2233456543 6889999999999998888 7788
Q ss_pred HHHHHHHHHHh
Q 045454 121 LQRKTAAVSKL 131 (133)
Q Consensus 121 l~~~~~~~~~~ 131 (133)
|...++++.+.
T Consensus 343 l~~~i~~~~~~ 353 (361)
T COG0821 343 LEALIEAYAEE 353 (361)
T ss_pred HHHHHHHHHHH
Confidence 88888877664
No 291
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=71.44 E-value=21 Score=23.74 Aligned_cols=63 Identities=16% Similarity=0.137 Sum_probs=38.8
Q ss_pred CCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCC-hhhHhhcCCCCccEEEEEeCCeEE
Q 045454 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDEL-PEFSNSWGVTATPTFFFLKDGRQI 110 (133)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~-~~~~~~~~v~~~P~~~~~~~g~~~ 110 (133)
+++..+-.|+.++|+.|.+.+-.|....- .+....+|.... +++.+..-...+|++. .+|..+
T Consensus 6 ~~~~~~~Ly~~~~s~~~~rv~~~L~e~gl---~~e~~~v~~~~~~~~~~~~nP~g~VPvL~--~~g~~l 69 (211)
T PRK09481 6 NKRSVMTLFSGPTDIYSHQVRIVLAEKGV---SVEIEQVEKDNLPQDLIDLNPYQSVPTLV--DRELTL 69 (211)
T ss_pred CCCCeeEEeCCCCChhHHHHHHHHHHCCC---CCEEEeCCcccCCHHHHHhCCCCCCCEEE--ECCEEe
Confidence 34444556667889999999877766532 244555665433 3454544566799986 455433
No 292
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=69.59 E-value=14 Score=24.28 Aligned_cols=31 Identities=13% Similarity=0.406 Sum_probs=25.1
Q ss_pred EEEEEeCCeEEEEeeCC-CHHHHHHHHHHHHHhh
Q 045454 100 TFFFLKDGRQIDKLIGS-NKLELQRKTAAVSKLL 132 (133)
Q Consensus 100 ~~~~~~~g~~~~~~~g~-~~~~l~~~~~~~~~~~ 132 (133)
++.+|..|+++ ..|. +.+++...++.+...|
T Consensus 140 ~~lIF~SGKvv--itGaks~~~~~~a~~~i~~~l 171 (174)
T cd04518 140 VLLLFSSGKMV--ITGAKSEEDAKRAVEKLLSRL 171 (174)
T ss_pred EEEEeCCCEEE--EEecCCHHHHHHHHHHHHHHH
Confidence 46677899997 5588 9999999999887765
No 293
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=69.40 E-value=7.2 Score=23.84 Aligned_cols=26 Identities=19% Similarity=0.411 Sum_probs=20.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHhhC
Q 045454 48 VANFSAQWCSPCKKIAPVYIQLADKY 73 (133)
Q Consensus 48 lv~f~~~~C~~C~~~~~~l~~~~~~~ 73 (133)
+-.|+.+.|..|+.++..|++-.-.+
T Consensus 3 itiy~~p~C~t~rka~~~L~~~gi~~ 28 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEHGIEY 28 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCc
Confidence 45688999999999999888654333
No 294
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=68.59 E-value=12 Score=27.37 Aligned_cols=54 Identities=13% Similarity=0.230 Sum_probs=40.5
Q ss_pred eEEEEEeCCCChhhHhhcCCCCccEEEEE--eCCeEEEEeeCC-CHHHHHHHHHHHH
Q 045454 76 MICLTVDVDELPEFSNSWGVTATPTFFFL--KDGRQIDKLIGS-NKLELQRKTAAVS 129 (133)
Q Consensus 76 v~~~~id~d~~~~~~~~~~v~~~P~~~~~--~~g~~~~~~~g~-~~~~l~~~~~~~~ 129 (133)
.-++..|..+...+..-|.+..+|.+.++ .-|+.+.+..|. ....+..-+.+++
T Consensus 133 wllV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi 189 (356)
T KOG1364|consen 133 WLLVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFI 189 (356)
T ss_pred EEEEeeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHH
Confidence 44556777788888888999999988888 579999888887 7665555555443
No 295
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=68.23 E-value=30 Score=25.58 Aligned_cols=74 Identities=16% Similarity=0.241 Sum_probs=42.0
Q ss_pred CChhhhhhh----HHHHHHHhhCCC----eEEEEEeCC-CCh--hhHhhcCCCCc-cEEEEEeCCeEEEEeeCC-CHHHH
Q 045454 55 WCSPCKKIA----PVYIQLADKYPS----MICLTVDVD-ELP--EFSNSWGVTAT-PTFFFLKDGRQIDKLIGS-NKLEL 121 (133)
Q Consensus 55 ~C~~C~~~~----~~l~~~~~~~~~----v~~~~id~d-~~~--~~~~~~~v~~~-P~~~~~~~g~~~~~~~g~-~~~~l 121 (133)
.||.|.+.. ....++.+.+.+ +.+...-|- +.+ .....+|+.+- +...+|++|+.+..+.+. -.++|
T Consensus 270 sCPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~~~~~~l 349 (360)
T PRK00366 270 SCPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEENIVEEL 349 (360)
T ss_pred ECCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeeeChHhHHHHH
Confidence 366665543 333444444432 666667774 322 33455677654 467788999998876655 44444
Q ss_pred HHHHHHH
Q 045454 122 QRKTAAV 128 (133)
Q Consensus 122 ~~~~~~~ 128 (133)
.+.++++
T Consensus 350 ~~~i~~~ 356 (360)
T PRK00366 350 EAEIEAY 356 (360)
T ss_pred HHHHHHH
Confidence 4444443
No 296
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=68.07 E-value=17 Score=19.48 Aligned_cols=58 Identities=9% Similarity=-0.012 Sum_probs=33.6
Q ss_pred EEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCC-ChhhHhhcCCCCccEEEEEeCCeE
Q 045454 50 NFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDE-LPEFSNSWGVTATPTFFFLKDGRQ 109 (133)
Q Consensus 50 ~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~-~~~~~~~~~v~~~P~~~~~~~g~~ 109 (133)
.|+.+.|+.|.+.+-.+....... .+....+|... .+++.+......+|.+.. .+|..
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~~~i-~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~~g~~ 61 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETGLGD-DVELVLVNPWSDDESLLAVNPLGKIPALVL-DDGEA 61 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhCCCC-CcEEEEcCcccCChHHHHhCCCCCCCEEEE-CCCCE
Confidence 467888999998877776621111 24444555332 345555545677997753 24433
No 297
>PF12617 LdpA_C: Iron-Sulfur binding protein C terminal; InterPro: IPR021039 This entry represents the C-terminal region of the iron-sulphur protein LdpA (Light dependent period), which is found in phototropic organisms. LdpA was originally identified in cyanobacteria where it is involved in light-dependent modulation of the circadian clock. The presence of iron-sulphur clusters on LdpA suggests that it may modulate the circadian clock as an indirect function of light intensity by sensing changes in cellular physiology [].
Probab=67.84 E-value=20 Score=23.81 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=45.1
Q ss_pred hhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhc----C-CCCccEEEEE-eCCeEEEEeeCC-CHHHHHHHHHHH
Q 045454 58 PCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSW----G-VTATPTFFFL-KDGRQIDKLIGS-NKLELQRKTAAV 128 (133)
Q Consensus 58 ~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~----~-v~~~P~~~~~-~~g~~~~~~~g~-~~~~l~~~~~~~ 128 (133)
.-..|...++.++.-...++++.|.|..++.+.+.+ . +...|...+. -+|+.|+..+|. +...-.++-+++
T Consensus 19 r~~~F~~lw~~l~~~~~~Lk~lAiSc~~~~~li~~L~~~~~~l~~l~~~~iWQ~DGRPMSGDIG~GTt~aaV~l~~~v 96 (183)
T PF12617_consen 19 RLAAFERLWQALAPSVPQLKLLAISCPDGEGLIDYLWQLYEILRPLPCPLIWQLDGRPMSGDIGDGTTRAAVKLAQKV 96 (183)
T ss_pred ccHHHHHHHHHHHhhhhhccEEEEECCCCHHHHHHHHHHHHHHhccCCCeeEeeCCcccCCCCCCcHHHHHHHHHHHH
Confidence 344566666666666667788888888776655544 2 3345654444 688888888887 544444444444
No 298
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=66.80 E-value=11 Score=21.33 Aligned_cols=32 Identities=19% Similarity=0.373 Sum_probs=20.5
Q ss_pred CccEEEEE-eCCeEEEEeeCC--CHHHHHHHHHHH
Q 045454 97 ATPTFFFL-KDGRQIDKLIGS--NKLELQRKTAAV 128 (133)
Q Consensus 97 ~~P~~~~~-~~g~~~~~~~g~--~~~~l~~~~~~~ 128 (133)
.-|+++++ .+|+.+.++.=. +.+++.+++.+.
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~k 75 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNEK 75 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHH
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHh
Confidence 46899988 678876665533 999999998864
No 299
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=65.98 E-value=42 Score=23.36 Aligned_cols=55 Identities=16% Similarity=0.286 Sum_probs=36.4
Q ss_pred CCcEEEEEEecC-----CChhhhhhhHHHHHHHhhCC-CeEEEEEeCCCChhhHhh----cCCCC
Q 045454 43 DGKIVVANFSAQ-----WCSPCKKIAPVYIQLADKYP-SMICLTVDVDELPEFSNS----WGVTA 97 (133)
Q Consensus 43 ~~~~~lv~f~~~-----~C~~C~~~~~~l~~~~~~~~-~v~~~~id~d~~~~~~~~----~~v~~ 97 (133)
++.+.+-.|+.. .-+.=..+...|++++...+ ++.+-.+|.+.+++..++ +|+..
T Consensus 24 ~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~ 88 (271)
T PF09822_consen 24 DEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQP 88 (271)
T ss_pred CCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCc
Confidence 455555555555 34444555556666666666 599999999888776666 77776
No 300
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=65.75 E-value=18 Score=23.84 Aligned_cols=32 Identities=19% Similarity=0.371 Sum_probs=26.3
Q ss_pred cEEEEEeCCeEEEEeeCC-CHHHHHHHHHHHHHhh
Q 045454 99 PTFFFLKDGRQIDKLIGS-NKLELQRKTAAVSKLL 132 (133)
Q Consensus 99 P~~~~~~~g~~~~~~~g~-~~~~l~~~~~~~~~~~ 132 (133)
.++.+|..|+++ ..|. +.++....++++.+.|
T Consensus 48 ~t~lIF~SGKiv--~tGaks~~~a~~a~~~~~~~L 80 (174)
T cd04518 48 IAALIFRSGKMV--CTGAKSVEDLHRAVKEIIKKL 80 (174)
T ss_pred EEEEEECCCeEE--EEccCCHHHHHHHHHHHHHHH
Confidence 578888999997 5588 9999999888887765
No 301
>COG3411 Ferredoxin [Energy production and conversion]
Probab=65.64 E-value=20 Score=19.47 Aligned_cols=29 Identities=10% Similarity=0.143 Sum_probs=21.6
Q ss_pred ccEEEEEeCCeEEEEeeCC-CHHHHHHHHHHHHH
Q 045454 98 TPTFFFLKDGRQIDKLIGS-NKLELQRKTAAVSK 130 (133)
Q Consensus 98 ~P~~~~~~~g~~~~~~~g~-~~~~l~~~~~~~~~ 130 (133)
=|++++|.+| . +.+. +.+...+.+++++.
T Consensus 17 gPvl~vYpeg-v---WY~~V~p~~a~rIv~~hl~ 46 (64)
T COG3411 17 GPVLVVYPEG-V---WYTRVDPEDARRIVQSHLL 46 (64)
T ss_pred CCEEEEecCC-e---eEeccCHHHHHHHHHHHHh
Confidence 4899999988 2 3344 88888888887764
No 302
>PRK00394 transcription factor; Reviewed
Probab=65.58 E-value=16 Score=24.09 Aligned_cols=31 Identities=10% Similarity=0.374 Sum_probs=24.8
Q ss_pred EEEEEeCCeEEEEeeCC-CHHHHHHHHHHHHHhh
Q 045454 100 TFFFLKDGRQIDKLIGS-NKLELQRKTAAVSKLL 132 (133)
Q Consensus 100 ~~~~~~~g~~~~~~~g~-~~~~l~~~~~~~~~~~ 132 (133)
++.+|..|+++ ..|. +.+++...++.+...+
T Consensus 141 ~~lIF~SGKvv--itGaks~~~~~~a~~~i~~~l 172 (179)
T PRK00394 141 VVLLFGSGKLV--ITGAKSEEDAEKAVEKILEKL 172 (179)
T ss_pred EEEEEcCCEEE--EEecCCHHHHHHHHHHHHHHH
Confidence 56677899997 5688 9999999998887654
No 303
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=65.57 E-value=17 Score=23.95 Aligned_cols=31 Identities=10% Similarity=0.306 Sum_probs=24.8
Q ss_pred EEEEEeCCeEEEEeeCC-CHHHHHHHHHHHHHhh
Q 045454 100 TFFFLKDGRQIDKLIGS-NKLELQRKTAAVSKLL 132 (133)
Q Consensus 100 ~~~~~~~g~~~~~~~g~-~~~~l~~~~~~~~~~~ 132 (133)
++.+|..|+++ ..|. +.++....++++.+.|
T Consensus 49 t~lIF~SGKiv--iTGaks~e~a~~a~~~i~~~L 80 (174)
T cd04516 49 TALIFSSGKMV--CTGAKSEDDSKLAARKYARII 80 (174)
T ss_pred EEEEECCCeEE--EEecCCHHHHHHHHHHHHHHH
Confidence 57788999997 5587 8899888888877655
No 304
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=65.29 E-value=17 Score=23.91 Aligned_cols=32 Identities=13% Similarity=0.376 Sum_probs=26.1
Q ss_pred cEEEEEeCCeEEEEeeCC-CHHHHHHHHHHHHHhh
Q 045454 99 PTFFFLKDGRQIDKLIGS-NKLELQRKTAAVSKLL 132 (133)
Q Consensus 99 P~~~~~~~g~~~~~~~g~-~~~~l~~~~~~~~~~~ 132 (133)
.++.+|..|+++ ..|. +.+++...++++.+.|
T Consensus 48 ~t~lIf~sGKiv--itGaks~~~~~~a~~~~~~~L 80 (174)
T cd00652 48 TTALIFSSGKMV--ITGAKSEEDAKLAARKYARIL 80 (174)
T ss_pred EEEEEECCCEEE--EEecCCHHHHHHHHHHHHHHH
Confidence 467888999997 5587 9999999988887765
No 305
>PRK10853 putative reductase; Provisional
Probab=64.13 E-value=8.8 Score=23.43 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=18.4
Q ss_pred EEEEecCCChhhhhhhHHHHHH
Q 045454 48 VANFSAQWCSPCKKIAPVYIQL 69 (133)
Q Consensus 48 lv~f~~~~C~~C~~~~~~l~~~ 69 (133)
+..|+.+.|..|+.+...|++-
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~ 23 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ 23 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc
Confidence 4578899999999999988753
No 306
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=63.28 E-value=11 Score=25.20 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=22.5
Q ss_pred hHhhcCCCCccEEEEEeCCeEEEEeeCC-CHHHHHHH
Q 045454 89 FSNSWGVTATPTFFFLKDGRQIDKLIGS-NKLELQRK 124 (133)
Q Consensus 89 ~~~~~~v~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~ 124 (133)
.+.+.|+.++|++++-.++..-..+.|. ..+.+++.
T Consensus 171 ~A~~~Gv~GVP~fvv~~~~~~~e~fwG~Drl~~~~~~ 207 (209)
T cd03021 171 EALKYGAFGLPWIVVTNDKGKTEMFFGSDRFEQVADF 207 (209)
T ss_pred HHHHcCCCCCCEEEEEcCCCCccceecCCcHHHHHHH
Confidence 3455699999999986432222367788 44444443
No 307
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=62.86 E-value=21 Score=23.48 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=25.5
Q ss_pred cEEEEEeCCeEEEEeeCC-CHHHHHHHHHHHHHhh
Q 045454 99 PTFFFLKDGRQIDKLIGS-NKLELQRKTAAVSKLL 132 (133)
Q Consensus 99 P~~~~~~~g~~~~~~~g~-~~~~l~~~~~~~~~~~ 132 (133)
.++.+|.+|+++ ..|. +.+++...++.+.+.+
T Consensus 48 ~t~lIF~sGKiv--iTGaks~~~~~~a~~~~~~~l 80 (174)
T cd04517 48 ATASVWSSGKIT--ITGATSEEEAKQAARRAARLL 80 (174)
T ss_pred EEEEEECCCeEE--EEccCCHHHHHHHHHHHHHHH
Confidence 367788999997 5588 9999999888887655
No 308
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=62.50 E-value=12 Score=23.13 Aligned_cols=22 Identities=5% Similarity=0.090 Sum_probs=18.6
Q ss_pred EEEEecCCChhhhhhhHHHHHH
Q 045454 48 VANFSAQWCSPCKKIAPVYIQL 69 (133)
Q Consensus 48 lv~f~~~~C~~C~~~~~~l~~~ 69 (133)
+.+|+-+.|..|+.++..|++-
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~ 24 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKAS 24 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 4578899999999999988754
No 309
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=60.73 E-value=40 Score=21.33 Aligned_cols=67 Identities=9% Similarity=0.133 Sum_probs=46.5
Q ss_pred CCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCc-c-EEEEEeCCeEE
Q 045454 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTAT-P-TFFFLKDGRQI 110 (133)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~-P-~~~~~~~g~~~ 110 (133)
-+++-.+++|-.-|+.|-.....|.+.-. -..+.|..+..+....+.+..++..- + ++.+..+|+..
T Consensus 5 ~~~p~~vvlyDG~C~lC~~~vrfLi~~D~-~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~ 73 (137)
T COG3011 5 MKKPDLVVLYDGVCPLCDGWVRFLIRRDQ-GGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLL 73 (137)
T ss_pred CCCCCEEEEECCcchhHHHHHHHHHHhcc-CCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceE
Confidence 45677788999999999986666655421 12588888888888888888876542 4 45555777653
No 310
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=60.15 E-value=28 Score=22.84 Aligned_cols=31 Identities=10% Similarity=0.408 Sum_probs=24.6
Q ss_pred EEEEEeCCeEEEEeeCC-CHHHHHHHHHHHHHhh
Q 045454 100 TFFFLKDGRQIDKLIGS-NKLELQRKTAAVSKLL 132 (133)
Q Consensus 100 ~~~~~~~g~~~~~~~g~-~~~~l~~~~~~~~~~~ 132 (133)
++.+|..|+++ ..|. +.+++.+.++.+...|
T Consensus 141 t~lIF~sGkvv--itGaks~~~~~~a~~~i~~~L 172 (174)
T cd00652 141 VLLIFVSGKIV--ITGAKSREDIYEAVEKIYPIL 172 (174)
T ss_pred EEEEEcCCEEE--EEecCCHHHHHHHHHHHHHHH
Confidence 45667889886 6688 8999999998887765
No 311
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=59.16 E-value=34 Score=19.99 Aligned_cols=71 Identities=18% Similarity=0.381 Sum_probs=38.2
Q ss_pred EecC-CChhhhhh------hHHHHH-HHhhCCC--eEEEEEeCCCChh------hHhhc--CCCCccEEEEEeCCeEEEE
Q 045454 51 FSAQ-WCSPCKKI------APVYIQ-LADKYPS--MICLTVDVDELPE------FSNSW--GVTATPTFFFLKDGRQIDK 112 (133)
Q Consensus 51 f~~~-~C~~C~~~------~~~l~~-~~~~~~~--v~~~~id~d~~~~------~~~~~--~v~~~P~~~~~~~g~~~~~ 112 (133)
|+|. -|+.|..+ ..-|+. +.++|++ +.+..+|+.+.++ ++++. +--.+|.++ .+|+++..
T Consensus 3 YGAe~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~--i~~eiV~E 80 (93)
T PF07315_consen 3 YGAEVICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVV--INDEIVAE 80 (93)
T ss_dssp EE-SS--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEE--ETTEEEEE
T ss_pred ccccccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEE--ECCEEEec
Confidence 4444 47777655 444443 5677875 8889999975443 33333 344688877 66888754
Q ss_pred eeCC-CHHHHHHHH
Q 045454 113 LIGS-NKLELQRKT 125 (133)
Q Consensus 113 ~~g~-~~~~l~~~~ 125 (133)
|. ....+-+++
T Consensus 81 --Gnp~LK~I~~~~ 92 (93)
T PF07315_consen 81 --GNPQLKDIYEEM 92 (93)
T ss_dssp --SS--HHHHHHHH
T ss_pred --CCccHHHHHHhh
Confidence 65 555555544
No 312
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=58.35 E-value=21 Score=21.25 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=20.7
Q ss_pred EecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCC
Q 045454 51 FSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDEL 86 (133)
Q Consensus 51 f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~ 86 (133)
|+.+.|..|+.+...|++- ++.+-.+|..+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~-----gi~~~~~d~~k~ 31 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEEN-----GIEYEFIDYKKE 31 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHT-----T--EEEEETTTS
T ss_pred CcCCCCHHHHHHHHHHHHc-----CCCeEeehhhhC
Confidence 5788999999999888763 556666777654
No 313
>PRK10026 arsenate reductase; Provisional
Probab=57.99 E-value=15 Score=23.35 Aligned_cols=22 Identities=5% Similarity=0.185 Sum_probs=18.6
Q ss_pred EEEEecCCChhhhhhhHHHHHH
Q 045454 48 VANFSAQWCSPCKKIAPVYIQL 69 (133)
Q Consensus 48 lv~f~~~~C~~C~~~~~~l~~~ 69 (133)
+..|+.+.|..|+.+...|++-
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~ 25 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS 25 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 4578899999999999888764
No 314
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=53.70 E-value=16 Score=28.78 Aligned_cols=70 Identities=17% Similarity=0.267 Sum_probs=47.5
Q ss_pred HHHhhhhhCCcEEEEEEecCCChhhhhhhHHH---HHHHhhC-CCeEEEEEeCCCChhhHh--------hcCCCCccEEE
Q 045454 35 AKVSESIKDGKIVVANFSAQWCSPCKKIAPVY---IQLADKY-PSMICLTVDVDELPEFSN--------SWGVTATPTFF 102 (133)
Q Consensus 35 ~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~-~~v~~~~id~d~~~~~~~--------~~~v~~~P~~~ 102 (133)
+..+++..+++++++-..-+.|-.|+.+...- ++.++.+ .++.-+.+|.++-|++-+ .+|-.++|.-+
T Consensus 103 eaf~kar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GGWPmsV 182 (786)
T KOG2244|consen 103 EAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGGWPMSV 182 (786)
T ss_pred HHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCCCceeE
Confidence 44556668999999999999999999885543 2244433 234455677777777544 23667788766
Q ss_pred EE
Q 045454 103 FL 104 (133)
Q Consensus 103 ~~ 104 (133)
++
T Consensus 183 ~L 184 (786)
T KOG2244|consen 183 FL 184 (786)
T ss_pred Ee
Confidence 66
No 315
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=53.70 E-value=54 Score=22.17 Aligned_cols=42 Identities=14% Similarity=0.136 Sum_probs=28.0
Q ss_pred CCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCCh
Q 045454 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELP 87 (133)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~ 87 (133)
...-.+.+|-...|+.|......+.. ....+.++.++...+.
T Consensus 107 ~~~~rlalFvkd~C~~C~~~~~~l~a---~~~~~Diylvgs~~dD 148 (200)
T TIGR03759 107 QGGGRLALFVKDDCVACDARVQRLLA---DNAPLDLYLVGSQGDD 148 (200)
T ss_pred CCCCeEEEEeCCCChHHHHHHHHHhc---CCCceeEEEecCCCCH
Confidence 34555667888999999988777632 2235777888854433
No 316
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=52.78 E-value=44 Score=21.98 Aligned_cols=31 Identities=10% Similarity=0.276 Sum_probs=24.0
Q ss_pred EEEEEeCCeEEEEeeCC-CHHHHHHHHHHHHHhh
Q 045454 100 TFFFLKDGRQIDKLIGS-NKLELQRKTAAVSKLL 132 (133)
Q Consensus 100 ~~~~~~~g~~~~~~~g~-~~~~l~~~~~~~~~~~ 132 (133)
++.+|..|+++ ..|. +.+++.+.++.+...+
T Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i~pil 172 (174)
T cd04517 141 TLSIFSTGSVT--VTGARSMEDVREAVEKIYPIV 172 (174)
T ss_pred EEEEeCCCEEE--EEecCCHHHHHHHHHHHHHHH
Confidence 45566788886 5688 8899999998887654
No 317
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=52.73 E-value=35 Score=18.23 Aligned_cols=50 Identities=12% Similarity=0.058 Sum_probs=30.4
Q ss_pred EEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcC-C-CCccEEE
Q 045454 50 NFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWG-V-TATPTFF 102 (133)
Q Consensus 50 ~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~-v-~~~P~~~ 102 (133)
.++.+.|+.|.+.+-.+....-.+ ....++....+.-..+.+ . ..+|++.
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~gl~~---~~~~~~~~~~~~~~~~~~p~~~~vP~l~ 54 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKGVPY---EYVEEDLGNKSELLLASNPVHKKIPVLL 54 (74)
T ss_pred EEECCCCchHHHHHHHHHHcCCCC---EEEEeCcccCCHHHHHhCCCCCCCCEEE
Confidence 466789999999988777764333 333444443222233443 3 5799886
No 318
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=52.54 E-value=66 Score=21.31 Aligned_cols=58 Identities=26% Similarity=0.291 Sum_probs=32.7
Q ss_pred hCCcEEEEEEe-cCCChhhhh----hhHHHHHHHhhCCCeEEEEEe-------------------CCCChhhHhhcCCCC
Q 045454 42 KDGKIVVANFS-AQWCSPCKK----IAPVYIQLADKYPSMICLTVD-------------------VDELPEFSNSWGVTA 97 (133)
Q Consensus 42 ~~~~~~lv~f~-~~~C~~C~~----~~~~l~~~~~~~~~v~~~~id-------------------~d~~~~~~~~~~v~~ 97 (133)
..++++|++|| +..-|.|-+ ++.-++++.+.+..|-=+..| .|...++...+|+..
T Consensus 88 t~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~sqKaF~sKqnlPYhLLSDpk~e~ik~lGa~k 167 (211)
T KOG0855|consen 88 TGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSASQKAFASKQNLPYHLLSDPKNEVIKDLGAPK 167 (211)
T ss_pred cCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCchHHHHHhhhhccCCeeeecCcchhHHHHhCCCC
Confidence 46678888888 555566643 355555555433222111112 244567788888776
Q ss_pred cc
Q 045454 98 TP 99 (133)
Q Consensus 98 ~P 99 (133)
.|
T Consensus 168 ~p 169 (211)
T KOG0855|consen 168 DP 169 (211)
T ss_pred CC
Confidence 44
No 319
>PLN00062 TATA-box-binding protein; Provisional
Probab=52.45 E-value=45 Score=22.06 Aligned_cols=31 Identities=13% Similarity=0.344 Sum_probs=23.6
Q ss_pred EEEEEeCCeEEEEeeCC-CHHHHHHHHHHHHHhh
Q 045454 100 TFFFLKDGRQIDKLIGS-NKLELQRKTAAVSKLL 132 (133)
Q Consensus 100 ~~~~~~~g~~~~~~~g~-~~~~l~~~~~~~~~~~ 132 (133)
++.+|..|+++ ..|. +.+++.+.++.+...|
T Consensus 140 ~~liF~sGkvv--itGaks~~~~~~ai~~i~p~L 171 (179)
T PLN00062 140 VLLIFVSGKIV--ITGAKVREEIYTAFENIYPVL 171 (179)
T ss_pred EEEEeCCCEEE--EEecCCHHHHHHHHHHHHHHH
Confidence 45566889886 5588 8999999988876544
No 320
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=51.95 E-value=47 Score=21.86 Aligned_cols=30 Identities=17% Similarity=0.433 Sum_probs=23.6
Q ss_pred EEEEeCCeEEEEeeCC-CHHHHHHHHHHHHHhh
Q 045454 101 FFFLKDGRQIDKLIGS-NKLELQRKTAAVSKLL 132 (133)
Q Consensus 101 ~~~~~~g~~~~~~~g~-~~~~l~~~~~~~~~~~ 132 (133)
+.+|..|+++ ..|. +.+++.+.++.+...|
T Consensus 141 ~liF~sGkvv--itGaks~~~~~~a~~~i~p~L 171 (174)
T cd04516 141 LLIFVSGKIV--LTGAKSREEIYQAFENIYPIL 171 (174)
T ss_pred EEEeCCCEEE--EEecCCHHHHHHHHHHHHHHH
Confidence 5566889986 5588 9999999998887654
No 321
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=51.85 E-value=77 Score=21.89 Aligned_cols=74 Identities=14% Similarity=0.187 Sum_probs=40.4
Q ss_pred HHHHHhhhhhCCcEEEEEEecC---CChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcC-CCCccEEE-EEeCC
Q 045454 33 WEAKVSESIKDGKIVVANFSAQ---WCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWG-VTATPTFF-FLKDG 107 (133)
Q Consensus 33 ~~~~~~~~~~~~~~~lv~f~~~---~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~-v~~~P~~~-~~~~g 107 (133)
.+..+.+....+.+++.+=+.+ -|+.++++...|... ++.+...|+-.+.++.+-.. ...+||+= +|-+|
T Consensus 128 ~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~-----nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~G 202 (227)
T KOG0911|consen 128 LDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSH-----NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKG 202 (227)
T ss_pred HHHHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHc-----CCCeeEEeccCCHHHHHHhhhhcCCCCccceeECC
Confidence 3334444333444444333444 566666666666554 45567778777776655442 34466643 44677
Q ss_pred eEEE
Q 045454 108 RQID 111 (133)
Q Consensus 108 ~~~~ 111 (133)
+.+.
T Consensus 203 EFiG 206 (227)
T KOG0911|consen 203 EFIG 206 (227)
T ss_pred Eecc
Confidence 6543
No 322
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=51.43 E-value=77 Score=21.73 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=41.2
Q ss_pred CChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhc-CCCCccEEEEEeCCeEEEEeeCCCHHHHHHHHHHHH
Q 045454 55 WCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSW-GVTATPTFFFLKDGRQIDKLIGSNKLELQRKTAAVS 129 (133)
Q Consensus 55 ~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~-~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~~~~~~~ 129 (133)
.|+.|+++.-.|. .....+.+-.+|...-|+-.+.. .-...|.+.+- |+.+ .+..++++++.+.+
T Consensus 20 dcpf~qr~~m~L~---~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d--~~~~-----tDs~~Ie~~Lee~l 85 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKFD--EKWV-----TDSDKIEEFLEEKL 85 (221)
T ss_pred CChhHHHHHHHHH---HcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEeC--Ccee-----ccHHHHHHHHHHhc
Confidence 5788887776666 33335777889998877766544 56667777643 3221 25667777776654
No 323
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=50.08 E-value=63 Score=20.34 Aligned_cols=107 Identities=11% Similarity=0.121 Sum_probs=54.8
Q ss_pred cCcCeEEeechhhHHHHHhhhhhCCcEEEEEEecCCChhh-hhhhHHHHHH-HhhCCCeEEEEEeCCCCh---hhHhhc-
Q 045454 20 ASKNVHLITTMVSWEAKVSESIKDGKIVVANFSAQWCSPC-KKIAPVYIQL-ADKYPSMICLTVDVDELP---EFSNSW- 93 (133)
Q Consensus 20 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C-~~~~~~l~~~-~~~~~~v~~~~id~d~~~---~~~~~~- 93 (133)
....+..+.+.++.++.+.. ....++|++ .+-|+=- -.++|-.... ....+--.++.+=+-... +-++.|
T Consensus 14 t~~Gf~eL~T~e~Vd~~~~~---~~GTtlVvV-NSVCGCAag~ARPa~~~al~~~kkPD~lvTVFAGqDkEAt~~aR~yf 89 (136)
T PF06491_consen 14 TRAGFEELTTAEEVDEALKN---KEGTTLVVV-NSVCGCAAGNARPAAAMALQNDKKPDHLVTVFAGQDKEATAKAREYF 89 (136)
T ss_dssp HTTT-EE--SHHHHHHHHHH-----SEEEEEE-E-SSHHHHHTHHHHHHHHHHHSS--SEEEEEETTTSHHHHHHHHHTS
T ss_pred HHcCccccCCHHHHHHHHhC---CCCcEEEEE-eccccccccccCHHHHHHHhCCCCCCceEEeccCCCHHHHHHHHHhc
Confidence 45567788888888888862 344454444 5556422 3446655543 332222333444333322 223444
Q ss_pred -C-CCCccEEEEEeCCeEEEEee-----CCCHHHHHHHHHHHHH
Q 045454 94 -G-VTATPTFFFLKDGRQIDKLI-----GSNKLELQRKTAAVSK 130 (133)
Q Consensus 94 -~-v~~~P~~~~~~~g~~~~~~~-----g~~~~~l~~~~~~~~~ 130 (133)
+ -.+-|++.+|++|+.++.+. |.+.+.+..-|....+
T Consensus 90 ~~~pPSSPS~ALfKdGelvh~ieRh~IEGr~a~~Ia~~L~~af~ 133 (136)
T PF06491_consen 90 EPYPPSSPSIALFKDGELVHFIERHHIEGRPAEEIAENLQDAFD 133 (136)
T ss_dssp TTS---SSEEEEEETTEEEEEE-GGGTTTS-HHHHHHHHHHHHH
T ss_pred CCCCCCCchheeeeCCEEEEEeehhhcCCCCHHHHHHHHHHHHH
Confidence 2 34678999999999998544 5577777766665543
No 324
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=48.48 E-value=43 Score=17.91 Aligned_cols=51 Identities=16% Similarity=0.190 Sum_probs=30.3
Q ss_pred CChhhhhhhHHHHHHHhhCCCeEEEEEeC-----CCChhhHhhcCCCCccEEEEEeCCeE
Q 045454 55 WCSPCKKIAPVYIQLADKYPSMICLTVDV-----DELPEFSNSWGVTATPTFFFLKDGRQ 109 (133)
Q Consensus 55 ~C~~C~~~~~~l~~~~~~~~~v~~~~id~-----d~~~~~~~~~~v~~~P~~~~~~~g~~ 109 (133)
+||+|++..=.++...-.+ .+.+ ++. ...+.+.+.-....+|++.. .+|+.
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~-~~~~--v~~~~~~~~~~~~~~~~~p~~~VP~L~~-~~g~v 56 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPY-EIKV--VPLIPKGEQKPPEFLALNPRGKVPVLVD-PDGTV 56 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTC-EEEE--EETTTTBCTTCHBHHHHSTT-SSSEEEE-TTTEE
T ss_pred CchHhHHHHHHHHHhCCCC-EEEE--EeeecCccccChhhhccCcCeEEEEEEE-CCCCE
Confidence 5999999988888775544 2333 322 12245555556677999886 36663
No 325
>PRK10387 glutaredoxin 2; Provisional
Probab=46.84 E-value=68 Score=21.01 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=28.4
Q ss_pred EEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCccEEE
Q 045454 50 NFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFF 102 (133)
Q Consensus 50 ~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~P~~~ 102 (133)
.++.+.||+|.+.+-.++...-.| ....++..++...........+|+++
T Consensus 3 Ly~~~~sp~~~kv~~~L~~~gi~y---~~~~~~~~~~~~~~~~~p~~~VPvL~ 52 (210)
T PRK10387 3 LYIYDHCPFCVKARMIFGLKNIPV---ELIVLANDDEATPIRMIGQKQVPILQ 52 (210)
T ss_pred EEeCCCCchHHHHHHHHHHcCCCe---EEEEcCCCchhhHHHhcCCcccceEE
Confidence 356778999998887776653322 33334433332222333345688885
No 326
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=46.67 E-value=59 Score=19.28 Aligned_cols=41 Identities=12% Similarity=-0.049 Sum_probs=24.2
Q ss_pred EEEecCCChhhhhhhHHHHHHHhhC--CCeEEEEEeCCCChhh
Q 045454 49 ANFSAQWCSPCKKIAPVYIQLADKY--PSMICLTVDVDELPEF 89 (133)
Q Consensus 49 v~f~~~~C~~C~~~~~~l~~~~~~~--~~v~~~~id~d~~~~~ 89 (133)
|.+|.+.+......+..=+++...+ .++.|-.+|+..+++.
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~ 45 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEA 45 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHH
Confidence 4555566666777766666655444 4799999999877653
No 327
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=46.13 E-value=82 Score=20.51 Aligned_cols=42 Identities=26% Similarity=0.406 Sum_probs=31.3
Q ss_pred hcCCCCccE--EEEEeCCeEEEEeeCC-CHHHHHHHHHHHHHhhC
Q 045454 92 SWGVTATPT--FFFLKDGRQIDKLIGS-NKLELQRKTAAVSKLLR 133 (133)
Q Consensus 92 ~~~v~~~P~--~~~~~~g~~~~~~~g~-~~~~l~~~~~~~~~~~~ 133 (133)
.|+...--+ +++.+.|++.....|. +..++...++-+-++++
T Consensus 140 AWqL~e~~SaivVlDk~G~VkfvkeGaLt~aevQ~Vi~ll~~l~k 184 (184)
T COG3054 140 AWQLKEESSAVVVLDKDGRVKFVKEGALTQAEVQQVIDLLQKLLK 184 (184)
T ss_pred hhccccccceEEEEcCCCcEEEEecCCccHHHHHHHHHHHHHhcC
Confidence 566665443 3333899999999999 99999998888777654
No 328
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=45.59 E-value=47 Score=17.61 Aligned_cols=49 Identities=8% Similarity=0.030 Sum_probs=27.2
Q ss_pred EecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCC--hhhHhhcCCCCccEEE
Q 045454 51 FSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDEL--PEFSNSWGVTATPTFF 102 (133)
Q Consensus 51 f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~--~~~~~~~~v~~~P~~~ 102 (133)
++.+.|+.|...+-.+....-.+ ....++..+. +++.+......+|++.
T Consensus 4 y~~~~~~~~~~v~~~l~~~gi~~---e~~~~~~~~~~~~~~~~~~p~~~vP~L~ 54 (72)
T cd03039 4 TYFNIRGRGEPIRLLLADAGVEY---EDVRITYEEWPELDLKPTLPFGQLPVLE 54 (72)
T ss_pred EEEcCcchHHHHHHHHHHCCCCc---EEEEeCHHHhhhhhhccCCcCCCCCEEE
Confidence 44567888887777776654333 3333443322 2233333456789886
No 329
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=45.54 E-value=1.3e+02 Score=22.84 Aligned_cols=36 Identities=14% Similarity=0.211 Sum_probs=28.7
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEe
Q 045454 47 VVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVD 82 (133)
Q Consensus 47 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id 82 (133)
-+|.|++..-+.-..+.|.++++.+++|++.+...-
T Consensus 50 p~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt 85 (419)
T COG1519 50 PLVWIHAASVGEVLAALPLVRALRERFPDLRILVTT 85 (419)
T ss_pred CeEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 456888999999999999999999998886554444
No 330
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=45.36 E-value=30 Score=21.65 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=19.1
Q ss_pred cCCChhhhhhhHHHHHHHhhCCCeEEEEE
Q 045454 53 AQWCSPCKKIAPVYIQLADKYPSMICLTV 81 (133)
Q Consensus 53 ~~~C~~C~~~~~~l~~~~~~~~~v~~~~i 81 (133)
.+-|..|. +.+.++.++||++.+..+
T Consensus 105 ~~pC~SC~---~vi~qF~~~~pni~~~v~ 130 (133)
T PF14424_consen 105 LPPCESCS---NVIEQFKKDFPNIKVNVV 130 (133)
T ss_pred CCcChhHH---HHHHHHHHHCCCcEEEEe
Confidence 45577776 588888999998766443
No 331
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=45.10 E-value=57 Score=24.20 Aligned_cols=72 Identities=11% Similarity=0.140 Sum_probs=37.4
Q ss_pred ChhhhhhhHHH----HHHHhhCC----CeEEEEEeCCCCh-h--hHhhcCCC-Ccc-EEEEEeCCeEEEEe-eCC-CHHH
Q 045454 56 CSPCKKIAPVY----IQLADKYP----SMICLTVDVDELP-E--FSNSWGVT-ATP-TFFFLKDGRQIDKL-IGS-NKLE 120 (133)
Q Consensus 56 C~~C~~~~~~l----~~~~~~~~----~v~~~~id~d~~~-~--~~~~~~v~-~~P-~~~~~~~g~~~~~~-~g~-~~~~ 120 (133)
||.|-+..=-+ +++.+.+. ++.+..+-|--|. . --..||+. +-| ...+|++|+.+.+. ... -.++
T Consensus 271 CPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~k~~~ee~~vd~ 350 (359)
T PF04551_consen 271 CPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVKKVIPEEEIVDE 350 (359)
T ss_dssp ----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEEEE-CSTCHHHH
T ss_pred CCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEEecCCHHHHHHH
Confidence 77776553333 34444443 5788888887543 2 22334555 334 47888999999887 444 4455
Q ss_pred HHHHHHH
Q 045454 121 LQRKTAA 127 (133)
Q Consensus 121 l~~~~~~ 127 (133)
|.+.+++
T Consensus 351 L~~~I~~ 357 (359)
T PF04551_consen 351 LIELIEE 357 (359)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555544
No 332
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=44.16 E-value=53 Score=19.16 Aligned_cols=31 Identities=10% Similarity=0.068 Sum_probs=22.3
Q ss_pred CCccEEEEEe--CCeEEEEeeCC-CHHHHHHHHHHHHH
Q 045454 96 TATPTFFFLK--DGRQIDKLIGS-NKLELQRKTAAVSK 130 (133)
Q Consensus 96 ~~~P~~~~~~--~g~~~~~~~g~-~~~~l~~~~~~~~~ 130 (133)
+.=|++++|. +| ...|. +++++...+++++.
T Consensus 51 ~~gp~vvvyP~~~g----~wy~~v~p~~v~~Iv~~hl~ 84 (97)
T cd03062 51 KFAGNVIIYPKGDG----IWYGRVTPEHVPPIVDRLIL 84 (97)
T ss_pred CcCCEEEEEeCCCe----eEEeecCHHHHHHHHHHHhc
Confidence 3469999998 65 34444 88888888887753
No 333
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=43.72 E-value=51 Score=17.48 Aligned_cols=45 Identities=11% Similarity=0.023 Sum_probs=25.6
Q ss_pred CCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCccEEEEEeCCeE
Q 045454 54 QWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFLKDGRQ 109 (133)
Q Consensus 54 ~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~g~~ 109 (133)
++|++|.+.+-.+... ++.+-.++++... .-....+|++. .+|+.
T Consensus 14 s~sp~~~~v~~~L~~~-----~i~~~~~~~~~~~----~~p~g~vP~l~--~~g~~ 58 (72)
T cd03054 14 SLSPECLKVETYLRMA-----GIPYEVVFSSNPW----RSPTGKLPFLE--LNGEK 58 (72)
T ss_pred CCCHHHHHHHHHHHhC-----CCceEEEecCCcc----cCCCcccCEEE--ECCEE
Confidence 5899999998888764 4333333333211 11234688876 34543
No 334
>PF11453 DUF2950: Protein of unknown function (DUF2950); InterPro: IPR021556 This is a bacterial family of uncharacterised proteins.
Probab=43.22 E-value=34 Score=24.24 Aligned_cols=37 Identities=22% Similarity=0.347 Sum_probs=29.9
Q ss_pred hhcCCCCccEEEEEeCCeEEEEeeCCCHHHHHHHHHH
Q 045454 91 NSWGVTATPTFFFLKDGRQIDKLIGSNKLELQRKTAA 127 (133)
Q Consensus 91 ~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~~~~~ 127 (133)
-+||.+++-|+++-.+|.+..+.-|.+...+.+.|+.
T Consensus 225 a~YG~TGVmtF~Vn~~g~VYqkDLG~~t~~~A~ai~~ 261 (271)
T PF11453_consen 225 AEYGETGVMTFMVNQDGQVYQKDLGPDTAAKAAAITS 261 (271)
T ss_pred hhhCCCceEEEEECCCCcEEecccCcchHHHhhhhhc
Confidence 4578889999999999999989889977777666654
No 335
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=42.93 E-value=45 Score=17.97 Aligned_cols=51 Identities=14% Similarity=0.077 Sum_probs=31.3
Q ss_pred EEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCC---CChhhHhhcCCCCccEEEE
Q 045454 50 NFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVD---ELPEFSNSWGVTATPTFFF 103 (133)
Q Consensus 50 ~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d---~~~~~~~~~~v~~~P~~~~ 103 (133)
.|+.+.|+.|.+.+-.++.... .+.+..++.. ..+++.+..-...+|++..
T Consensus 3 Ly~~~~~~~~~~~~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~ 56 (75)
T cd03044 3 LYTYPGNPRSLKILAAAKYNGL---DVEIVDFQPGKENKTPEFLKKFPLGKVPAFEG 56 (75)
T ss_pred EecCCCCccHHHHHHHHHHcCC---ceEEEecccccccCCHHHHHhCCCCCCCEEEc
Confidence 4667788888888777765422 2444555553 2344444445677999863
No 336
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=42.01 E-value=31 Score=18.31 Aligned_cols=25 Identities=36% Similarity=0.602 Sum_probs=16.9
Q ss_pred hCCcEEEEEEecCC-----------ChhhhhhhHHH
Q 045454 42 KDGKIVVANFSAQW-----------CSPCKKIAPVY 66 (133)
Q Consensus 42 ~~~~~~lv~f~~~~-----------C~~C~~~~~~l 66 (133)
-.+.+++-+-+.-| ||.|++....|
T Consensus 22 v~G~pVvALCGk~wvp~rdp~~~PVCP~Ck~iye~l 57 (58)
T PF11238_consen 22 VMGTPVVALCGKVWVPTRDPKPFPVCPECKEIYESL 57 (58)
T ss_pred hcCceeEeeeCceeCCCCCCCCCCCCcCHHHHHHhc
Confidence 46677766655544 99998876654
No 337
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=41.95 E-value=33 Score=22.12 Aligned_cols=25 Identities=8% Similarity=-0.205 Sum_probs=21.8
Q ss_pred EEecCCChhhhhhhHHHHHHHhhCC
Q 045454 50 NFSAQWCSPCKKIAPVYIQLADKYP 74 (133)
Q Consensus 50 ~f~~~~C~~C~~~~~~l~~~~~~~~ 74 (133)
+|+-.-||+|--..+.|.++...++
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~~ 27 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARHG 27 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhC
Confidence 5667799999999999999988874
No 338
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=41.86 E-value=53 Score=21.00 Aligned_cols=41 Identities=10% Similarity=0.038 Sum_probs=26.7
Q ss_pred hHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhC
Q 045454 32 SWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKY 73 (133)
Q Consensus 32 ~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~ 73 (133)
.+.+.+.+.+...+|-+|.+.+ +...|+.+...+.++..+.
T Consensus 50 ~~~~~l~~~i~~~kP~vI~v~g-~~~~s~~l~~~v~~~v~~~ 90 (150)
T PF14639_consen 50 EDMERLKKFIEKHKPDVIAVGG-NSRESRKLYDDVRDIVEEL 90 (150)
T ss_dssp HHHHHHHHHHHHH--SEEEE---SSTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCeEEEEcC-CChhHHHHHHHHHHHHHHh
Confidence 3344444455667777777755 8899999999998887665
No 339
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=41.72 E-value=1.4e+02 Score=21.94 Aligned_cols=86 Identities=14% Similarity=0.065 Sum_probs=49.6
Q ss_pred hCCcEEEEEEecCCChhhh-hhhHHHH-HHHhhCCCeEEEEEeCCCChhhHhhcCC--CCccEEEEEeCCeEEE---Eee
Q 045454 42 KDGKIVVANFSAQWCSPCK-KIAPVYI-QLADKYPSMICLTVDVDELPEFSNSWGV--TATPTFFFLKDGRQID---KLI 114 (133)
Q Consensus 42 ~~~~~~lv~f~~~~C~~C~-~~~~~l~-~~~~~~~~v~~~~id~d~~~~~~~~~~v--~~~P~~~~~~~g~~~~---~~~ 114 (133)
.++.|.+|+|+.+.-.... .+...+. ++..+-..+.++..|...-..-...+|- ..+|.+.+..= +.++ .+.
T Consensus 225 EEGlPflILf~~kdD~~s~k~F~~aI~ReL~~e~~~in~l~ADG~~f~hpL~HlgKs~~DLPviaIDsF-~Hmylfp~f~ 303 (375)
T KOG0912|consen 225 EEGLPFLILFRKKDDKESEKIFKNAIARELDDETLAINFLTADGKVFKHPLRHLGKSPDDLPVIAIDSF-RHMYLFPDFN 303 (375)
T ss_pred hcCCceEEEEecCCcccHHHHHHHHHHHHhhhhhhccceeecCcceecchHHHhCCCcccCcEEEeecc-ceeeecCchh
Confidence 5799999999988776553 3333332 3333333478877777755444666653 35776654411 1111 111
Q ss_pred CC-CHHHHHHHHHHH
Q 045454 115 GS-NKLELQRKTAAV 128 (133)
Q Consensus 115 g~-~~~~l~~~~~~~ 128 (133)
.. .+.+|.+|+..+
T Consensus 304 di~~pGkLkqFv~DL 318 (375)
T KOG0912|consen 304 DINIPGKLKQFVADL 318 (375)
T ss_pred hhcCccHHHHHHHHH
Confidence 22 556788887765
No 340
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=41.25 E-value=30 Score=23.40 Aligned_cols=39 Identities=15% Similarity=0.375 Sum_probs=26.4
Q ss_pred HHHHHhhCCC-eEEEEEeCCCChhhHhhcCCCCccEEEEEeCCeEE
Q 045454 66 YIQLADKYPS-MICLTVDVDELPEFSNSWGVTATPTFFFLKDGRQI 110 (133)
Q Consensus 66 l~~~~~~~~~-v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~g~~~ 110 (133)
+.++.+.++. +.| |..+.+.++|+++.+|+++. .+|+.+
T Consensus 158 ~~~l~~~l~~~vYf-----dQ~g~Lt~rF~I~~VPavV~-q~g~~l 197 (202)
T TIGR02743 158 VNELEKRLDSRIYF-----DQHGKLTQKFGIKHVPARVS-QEGLRL 197 (202)
T ss_pred HHHHHHHhCCceEE-----cCCchHhhccCceeeceEEE-ecCCEE
Confidence 3444555532 433 67788999999999999885 455443
No 341
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=41.09 E-value=97 Score=20.59 Aligned_cols=54 Identities=15% Similarity=0.139 Sum_probs=29.3
Q ss_pred EecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCccEEEEEeCCe
Q 045454 51 FSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFLKDGR 108 (133)
Q Consensus 51 f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~g~ 108 (133)
++...||+|.+.+-.|....-.+ ....++.+++....+......+|++.. .+|.
T Consensus 3 y~~~~sp~~~kvr~~L~~~gl~~---e~~~~~~~~~~~~~~~np~g~vP~l~~-~~g~ 56 (209)
T TIGR02182 3 YIYDHCPFCVRARMIFGLKNIPV---EKHVLLNDDEETPIRMIGAKQVPILQK-DDGR 56 (209)
T ss_pred ecCCCCChHHHHHHHHHHcCCCe---EEEECCCCcchhHHHhcCCCCcceEEe-eCCe
Confidence 55677999988777766553333 222233333333333334567897753 3443
No 342
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=40.12 E-value=58 Score=21.21 Aligned_cols=25 Identities=12% Similarity=0.012 Sum_probs=21.8
Q ss_pred EEecCCChhhhhhhHHHHHHHhhCC
Q 045454 50 NFSAQWCSPCKKIAPVYIQLADKYP 74 (133)
Q Consensus 50 ~f~~~~C~~C~~~~~~l~~~~~~~~ 74 (133)
+|+-.-||+|....+.|.++.+.++
T Consensus 3 ~~~D~~cP~cyl~~~~l~~~~~~~~ 27 (201)
T cd03024 3 IWSDVVCPWCYIGKRRLEKALAELG 27 (201)
T ss_pred EEecCcCccHHHHHHHHHHHHHhCC
Confidence 4667789999999999999998884
No 343
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=39.88 E-value=1.5e+02 Score=21.85 Aligned_cols=84 Identities=7% Similarity=-0.071 Sum_probs=53.3
Q ss_pred CCcEEEEEEecCCChhhhhhhHHHHHHHhhCC-CeEEEEEeCCCChhhHh--hcCCCCccEEEEEeCCeEEEEeeCC-CH
Q 045454 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYP-SMICLTVDVDELPEFSN--SWGVTATPTFFFLKDGRQIDKLIGS-NK 118 (133)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~id~d~~~~~~~--~~~v~~~P~~~~~~~g~~~~~~~g~-~~ 118 (133)
.+.+++ .++-.....-..+...+.+++++.. .++. .-. ....-.. .+.-.++|++.+=-.-+.++..... +.
T Consensus 249 g~Gp~i-~~~D~~~i~~~~l~~~l~~~A~~~~I~~Q~--~~~-~gGtDa~~~~~~~~Gvpt~~i~ip~Ry~Hs~~e~i~~ 324 (350)
T TIGR03107 249 GEGTLL-RFFDPGHIMLPRMKDFLLTTAEEAGIKYQY--YVA-KGGTDAGAAHLKNSGVPSTTIGVCARYIHSHQTLYSI 324 (350)
T ss_pred CCCceE-EEecCCCCCCHHHHHHHHHHHHHcCCCcEE--ecC-CCCchHHHHHHhCCCCcEEEEccCcccccChhheeeH
Confidence 455555 4556688888999999999999883 2443 111 1122222 4556789998877555666666666 77
Q ss_pred HHHHHHHHHHHH
Q 045454 119 LELQRKTAAVSK 130 (133)
Q Consensus 119 ~~l~~~~~~~~~ 130 (133)
.++++.++-+.+
T Consensus 325 ~D~~~~~~Ll~~ 336 (350)
T TIGR03107 325 DDFLAAQAFLQA 336 (350)
T ss_pred HHHHHHHHHHHH
Confidence 776666554443
No 344
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=37.23 E-value=1.4e+02 Score=20.51 Aligned_cols=42 Identities=17% Similarity=0.167 Sum_probs=27.4
Q ss_pred CCcEEEEEEe-----cCCChhhhhhhHHHH-HHHhhC-CCeEEEEEeCC
Q 045454 43 DGKIVVANFS-----AQWCSPCKKIAPVYI-QLADKY-PSMICLTVDVD 84 (133)
Q Consensus 43 ~~~~~lv~f~-----~~~C~~C~~~~~~l~-~~~~~~-~~v~~~~id~d 84 (133)
..+++|-.|. ...|+.|-.+...+. .+.... .++.|+.|...
T Consensus 67 r~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSra 115 (211)
T PF05988_consen 67 RRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRA 115 (211)
T ss_pred CceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCC
Confidence 4455555555 567999999999884 443333 35888777753
No 345
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=36.99 E-value=92 Score=18.48 Aligned_cols=21 Identities=14% Similarity=0.509 Sum_probs=15.6
Q ss_pred EEEEecCCChhhhhh-hHHHHH
Q 045454 48 VANFSAQWCSPCKKI-APVYIQ 68 (133)
Q Consensus 48 lv~f~~~~C~~C~~~-~~~l~~ 68 (133)
|-.||-+-||+|+++ ...|..
T Consensus 3 v~vyyESlCPd~~~fi~~~L~p 24 (108)
T PF03227_consen 3 VEVYYESLCPDCRRFITNQLFP 24 (108)
T ss_pred EEEEEEecCHhHHHHHHHHHHH
Confidence 457899999999886 444543
No 346
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=36.68 E-value=1.4e+02 Score=20.60 Aligned_cols=51 Identities=14% Similarity=0.076 Sum_probs=32.9
Q ss_pred CCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCC-hhhHhhcCCCCccEEEEEeCCeE
Q 045454 54 QWCSPCKKIAPVYIQLADKYPSMICLTVDVDEL-PEFSNSWGVTATPTFFFLKDGRQ 109 (133)
Q Consensus 54 ~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~-~~~~~~~~v~~~P~~~~~~~g~~ 109 (133)
.-||+|++.+-.+....- .+.+..+|.... +.+.+..-...+|++. .+|..
T Consensus 17 ~~cp~~~rv~i~L~ekgi---~~e~~~vd~~~~~~~fl~inP~g~vPvL~--~~g~~ 68 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGV---VFNVTTVDLKRKPEDLQNLAPGTHPPFLT--YNTEV 68 (236)
T ss_pred CCCHhHHHHHHHHHHcCC---CcEEEEECCCCCCHHHHHHCcCCCCCEEE--ECCEE
Confidence 568999988877775211 356677777654 4555544566799886 35543
No 347
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=35.86 E-value=59 Score=19.89 Aligned_cols=15 Identities=33% Similarity=0.452 Sum_probs=12.8
Q ss_pred HhhcCCCCccEEEEE
Q 045454 90 SNSWGVTATPTFFFL 104 (133)
Q Consensus 90 ~~~~~v~~~P~~~~~ 104 (133)
+..||++.+|.++|.
T Consensus 76 Aw~lgi~k~PAVVfD 90 (114)
T PF07511_consen 76 AWSLGITKYPAVVFD 90 (114)
T ss_pred HHHhCccccCEEEEc
Confidence 556799999999977
No 348
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=35.81 E-value=1.1e+02 Score=22.42 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=31.6
Q ss_pred CCcEEEEEEecCCChhhhhhhHHHHHHHhhC--CCeEEEEEeC
Q 045454 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKY--PSMICLTVDV 83 (133)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~--~~v~~~~id~ 83 (133)
++||+++.|-...-+..+.+...+.+.+++. +++.++.+..
T Consensus 157 dGKPv~~Iy~p~~~pd~~~~~~~wr~~a~~~G~~giyii~~~~ 199 (345)
T PF14307_consen 157 DGKPVFLIYRPGDIPDIKEMIERWREEAKEAGLPGIYIIAVQG 199 (345)
T ss_pred CCEEEEEEECcccccCHHHHHHHHHHHHHHcCCCceEEEEEec
Confidence 7899988777766788899999999988876 4566666553
No 349
>KOG3286 consensus Selenoprotein T [General function prediction only]
Probab=35.63 E-value=1.4e+02 Score=20.32 Aligned_cols=78 Identities=13% Similarity=0.042 Sum_probs=52.8
Q ss_pred CcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhc-----CCCCccEEEEEeCCeEEEEeeCC-C
Q 045454 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSW-----GVTATPTFFFLKDGRQIDKLIGS-N 117 (133)
Q Consensus 44 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~-----~v~~~P~~~~~~~g~~~~~~~g~-~ 117 (133)
-.+++-.++--.|++=+.+..+.+-+.++||++.+.-.|-.. ...++| .+-.+=.+.++-.|.....+.|. .
T Consensus 68 ~~ptl~i~fCvSCgYk~af~~~~~~l~ekyPgl~IegaNy~P--p~~kr~lAk~v~v~k~gvIglii~G~~pF~~iGl~~ 145 (226)
T KOG3286|consen 68 YGPTLEINFCVSCGYKQAFEQYKKFLKEKYPGLDIEGANYPP--PAWKRYLAKVVSVVKMGVIGLIIGGKNPFEFIGLGY 145 (226)
T ss_pred cCCcEEEEEEEecCcHHHHHHHHHHHHhhCCCceeecCcCCC--chHHHHHHHHHHHHhheeEEEEeccCCccceecCCC
Confidence 346677778888999888888888888999998775555443 234444 33333345555778888888888 5
Q ss_pred HHHHHH
Q 045454 118 KLELQR 123 (133)
Q Consensus 118 ~~~l~~ 123 (133)
+.-+..
T Consensus 146 P~iwqh 151 (226)
T KOG3286|consen 146 PSIWQH 151 (226)
T ss_pred cHHHHH
Confidence 444443
No 350
>KOG2990 consensus C2C2-type Zn-finger protein [Function unknown]
Probab=35.13 E-value=69 Score=23.00 Aligned_cols=47 Identities=17% Similarity=0.355 Sum_probs=28.2
Q ss_pred ccccCcCeEEeechhhHHHHHhhhhhCCcEEEEEEecC---CChhhhhhhHH
Q 045454 17 VEFASKNVHLITTMVSWEAKVSESIKDGKIVVANFSAQ---WCSPCKKIAPV 65 (133)
Q Consensus 17 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~lv~f~~~---~C~~C~~~~~~ 65 (133)
.+..++.+.......-+-+.-.+ ......||.|--| ||..|+....+
T Consensus 15 ~~p~~gsln~~~g~h~lrerarK--i~~gilvIRFEMPynIWC~gC~nhIgm 64 (317)
T KOG2990|consen 15 FNPKHGSLNKYHGTHALRERARK--IDQGILVIRFEMPYNIWCDGCKNHIGM 64 (317)
T ss_pred CCcccCcccccccchhHHHHHHh--hccceEEEEEecccchhhccHHHhhhc
Confidence 34455555555544444443333 2667888889766 99999876544
No 351
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=34.58 E-value=78 Score=16.92 Aligned_cols=54 Identities=11% Similarity=0.099 Sum_probs=33.1
Q ss_pred EEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCC----ChhhHhhcCCCCccEEEEEeCCe
Q 045454 50 NFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDE----LPEFSNSWGVTATPTFFFLKDGR 108 (133)
Q Consensus 50 ~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~----~~~~~~~~~v~~~P~~~~~~~g~ 108 (133)
.++.+.++.|+...-.+...... +....++..+ .+++.+......+|++. .+|.
T Consensus 3 ly~~~~s~~~~~v~~~l~~~g~~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~ 60 (76)
T cd03050 3 LYYDLMSQPSRAVYIFLKLNKIP---FEECPIDLRKGEQLTPEFKKINPFGKVPAIV--DGDF 60 (76)
T ss_pred EeeCCCChhHHHHHHHHHHcCCC---cEEEEecCCCCCcCCHHHHHhCcCCCCCEEE--ECCE
Confidence 56778889998887766665433 3444455432 23444555667899886 3554
No 352
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=34.44 E-value=27 Score=23.77 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=21.2
Q ss_pred CCChhhHhhcCCCCccEEEEE-eCCeEE
Q 045454 84 DELPEFSNSWGVTATPTFFFL-KDGRQI 110 (133)
Q Consensus 84 d~~~~~~~~~~v~~~P~~~~~-~~g~~~ 110 (133)
|..+.+.++|+++.+|.++.- .+|+.+
T Consensus 170 dQ~G~Lt~rF~I~~VPAvV~~~q~G~~l 197 (209)
T PRK13738 170 DQNGVLCQRFGIDQVPARVSAVPGGRFL 197 (209)
T ss_pred cCcchHHHhcCCeeeceEEEEcCCCCEE
Confidence 667779999999999999862 556554
No 353
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=34.11 E-value=53 Score=21.90 Aligned_cols=26 Identities=12% Similarity=0.303 Sum_probs=11.9
Q ss_pred chhhHHHHHhhhhhCCcEEEEEEecCCCh
Q 045454 29 TMVSWEAKVSESIKDGKIVVANFSAQWCS 57 (133)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~lv~f~~~~C~ 57 (133)
+...+.+.+. .++++++|.|++-|--
T Consensus 120 s~~~lr~~l~---~~~~P~LllFGTGwGL 145 (185)
T PF09936_consen 120 SYAELRRMLE---EEDRPVLLLFGTGWGL 145 (185)
T ss_dssp -HHHHHHHHH---H--S-EEEEE--TT--
T ss_pred CHHHHHHHHh---ccCCeEEEEecCCCCC
Confidence 3344444442 5799999999999953
No 354
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=33.15 E-value=2.3e+02 Score=22.01 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=24.6
Q ss_pred CCcEEEEEEecCCC-hhhhhhhHHHHHHHhhCCC--eEEEEEe
Q 045454 43 DGKIVVANFSAQWC-SPCKKIAPVYIQLADKYPS--MICLTVD 82 (133)
Q Consensus 43 ~~~~~lv~f~~~~C-~~C~~~~~~l~~~~~~~~~--v~~~~id 82 (133)
+-..++|+|+.+.- ..=......+..+..+++. +.++.+.
T Consensus 280 ~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~ 322 (499)
T PF05679_consen 280 NVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVK 322 (499)
T ss_pred ceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEec
Confidence 44577778877433 3333456677778888865 5555554
No 355
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=32.89 E-value=56 Score=17.99 Aligned_cols=65 Identities=14% Similarity=0.227 Sum_probs=34.6
Q ss_pred cCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHh---hcCCCCccEEEEEeC-CeEEEEeeCCCHHHHHHHHHH
Q 045454 53 AQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSN---SWGVTATPTFFFLKD-GRQIDKLIGSNKLELQRKTAA 127 (133)
Q Consensus 53 ~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~---~~~v~~~P~~~~~~~-g~~~~~~~g~~~~~l~~~~~~ 127 (133)
.+||++|.+.+-.|......+ ....++......... .-....+|++. .+ |..+ .+...+.+.+++
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i~~---~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~~l-----~eS~aI~~yL~~ 81 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGLEY---KTVPVEFPDIPPILGELTSGGFYTVPVIV--DGSGEVI-----GDSFAIAEYLEE 81 (84)
T ss_pred CCcCChhHHHHHHHHhCCCCC---eEEEecCCCcccccccccCCCCceeCeEE--ECCCCEE-----eCHHHHHHHHHH
Confidence 368999998888877654333 333444433222212 12345689875 34 5432 144555555544
No 356
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=32.82 E-value=1.2e+02 Score=24.44 Aligned_cols=99 Identities=17% Similarity=0.221 Sum_probs=61.1
Q ss_pred chhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHH-------HH---HHHhhCCCeEEEEEeCCCChhhHhhcCCCCc
Q 045454 29 TMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPV-------YI---QLADKYPSMICLTVDVDELPEFSNSWGVTAT 98 (133)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~-------l~---~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~ 98 (133)
+.+.+.+.++++ ++...=+|.-|-+|..++-.--.+ |. +++++..=+.+.++ .|-++..++.-++
T Consensus 47 ~pe~W~~~i~k~-k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl~~~~GLyv~LRi----GPyIcaEw~~GG~ 121 (649)
T KOG0496|consen 47 TPEMWPDLIKKA-KAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKLIHKAGLYVILRI----GPYICAEWNFGGL 121 (649)
T ss_pred ChhhhHHHHHHH-HhcCCceeeeeeecccccCCCCcccccchhHHHHHHHHHHHCCeEEEecC----CCeEEecccCCCc
Confidence 456777877776 567777778888888877544222 22 23333311333333 3788889999999
Q ss_pred cEEEEEeCCeEEEEeeCCCHHHHHHHHHHHHHhh
Q 045454 99 PTFFFLKDGRQIDKLIGSNKLELQRKTAAVSKLL 132 (133)
Q Consensus 99 P~~~~~~~g~~~~~~~g~~~~~l~~~~~~~~~~~ 132 (133)
|..+-+..|-.......+=..+++++.+.++.++
T Consensus 122 P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~m 155 (649)
T KOG0496|consen 122 PWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMM 155 (649)
T ss_pred chhhhhCCceEEecCChHHHHHHHHHHHHHHHHH
Confidence 9555445554443333335667777777777655
No 357
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=32.24 E-value=1.4e+02 Score=19.23 Aligned_cols=41 Identities=10% Similarity=0.130 Sum_probs=32.6
Q ss_pred CCcEEEEEEecCCChhhhhhhHHHHHHHhhCCC--eEEEEEeC
Q 045454 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYPS--MICLTVDV 83 (133)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--v~~~~id~ 83 (133)
+++-+.+.++++..+.|.-+...++.+++.+.+ +.+-.+++
T Consensus 126 ~~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~ 168 (171)
T PF07700_consen 126 DDNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVEC 168 (171)
T ss_dssp ETTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred CCCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEecc
Confidence 456778888999999999999999999999865 55444443
No 358
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=32.24 E-value=1.9e+02 Score=20.70 Aligned_cols=98 Identities=12% Similarity=0.089 Sum_probs=51.4
Q ss_pred hhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCCh-----hhHhhcCCCCccEEEEE
Q 045454 30 MVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELP-----EFSNSWGVTATPTFFFL 104 (133)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~-----~~~~~~~v~~~P~~~~~ 104 (133)
...|.+.+........-....++.++|..-..-...+.+++++. ++-++.-+...+. ++++.++. |++.+=
T Consensus 167 ~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~v-D~miVIGg~~SsNT~kL~eia~~~~~---~t~~Ie 242 (281)
T PF02401_consen 167 VEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEV-DAMIVIGGKNSSNTRKLAEIAKEHGK---PTYHIE 242 (281)
T ss_dssp HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCS-SEEEEES-TT-HHHHHHHHHHHHCTT---CEEEES
T ss_pred HHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhC-CEEEEecCCCCccHHHHHHHHHHhCC---CEEEeC
Confidence 34555554443333334433588999999988889998888765 5433333333221 24444433 554432
Q ss_pred ----------eCCeEEEEeeCC-CHHHHHHHHHHHHHh
Q 045454 105 ----------KDGRQIDKLIGS-NKLELQRKTAAVSKL 131 (133)
Q Consensus 105 ----------~~g~~~~~~~g~-~~~~l~~~~~~~~~~ 131 (133)
++.+.+.--.|. +++.+.+.+-+.++.
T Consensus 243 ~~~el~~~~l~~~~~VGItaGASTP~~ii~eVi~~l~~ 280 (281)
T PF02401_consen 243 TADELDPEWLKGVKKVGITAGASTPDWIIEEVIDRLEE 280 (281)
T ss_dssp SGGG--HHHHTT-SEEEEEE-TTS-HHHHHHHHHHHHH
T ss_pred CccccCHhHhCCCCEEEEEccCCCCHHHHHHHHHHHhc
Confidence 345577778888 777777666665543
No 359
>PRK15113 glutathione S-transferase; Provisional
Probab=31.52 E-value=1.6e+02 Score=19.54 Aligned_cols=60 Identities=15% Similarity=0.131 Sum_probs=34.6
Q ss_pred EEEEEEecC--CChhhhhhhHHHHHHHhhCCCeEEEEEeCCC----ChhhHhhcCCCCccEEEEEeCCeEE
Q 045454 46 IVVANFSAQ--WCSPCKKIAPVYIQLADKYPSMICLTVDVDE----LPEFSNSWGVTATPTFFFLKDGRQI 110 (133)
Q Consensus 46 ~~lv~f~~~--~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~----~~~~~~~~~v~~~P~~~~~~~g~~~ 110 (133)
+.+..++.+ .|++|++..-.+....-. +.+..+|... .+++.+..-...+|++. .+|..+
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~---~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~--~~~~~l 69 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLP---FELKTVDLDAGEHLQPTYQGYSLTRRVPTLQ--HDDFEL 69 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCC---CeEEEeCCCCccccCHHHHhcCCCCCCCEEE--ECCEEE
Confidence 344455544 699998777766665332 4455566543 24454444456799986 345433
No 360
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=29.88 E-value=21 Score=23.81 Aligned_cols=65 Identities=18% Similarity=0.205 Sum_probs=31.4
Q ss_pred CCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhc-CCCCccEEEEEeCCeEE
Q 045454 43 DGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSW-GVTATPTFFFLKDGRQI 110 (133)
Q Consensus 43 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~-~v~~~P~~~~~~~g~~~ 110 (133)
..++++--+|.+.|.+=.+..-.|+.+--+|.-+.++.-. +++..-.+.. -...+|+++ .+|..+
T Consensus 3 ~~KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~-~q~~~ef~~iNPm~kVP~L~--i~g~tl 68 (217)
T KOG0868|consen 3 AAKPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEE-DQSDSEFKEINPMEKVPTLV--IDGLTL 68 (217)
T ss_pred cccchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcch-hhhhhHHhhcCchhhCCeEE--ECCEEe
Confidence 3567766677777776555544444443333333332221 1111112222 245689987 445443
No 361
>PRK11752 putative S-transferase; Provisional
Probab=29.68 E-value=2e+02 Score=20.05 Aligned_cols=54 Identities=11% Similarity=0.047 Sum_probs=34.5
Q ss_pred EEecCCChhhhhhhHHHHHH-HhhCCC--eEEEEEeCCC----ChhhHhhcCCCCccEEEE
Q 045454 50 NFSAQWCSPCKKIAPVYIQL-ADKYPS--MICLTVDVDE----LPEFSNSWGVTATPTFFF 103 (133)
Q Consensus 50 ~f~~~~C~~C~~~~~~l~~~-~~~~~~--v~~~~id~d~----~~~~~~~~~v~~~P~~~~ 103 (133)
.+|..+++.|++.+-.|..+ +...++ +.+..+|... .+++.+..-...+|++..
T Consensus 46 ~Ly~~~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~ 106 (264)
T PRK11752 46 QLYSLGTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLD 106 (264)
T ss_pred EEecCCCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEe
Confidence 34445699999999888875 333443 5556666543 345555445667999964
No 362
>PTZ00151 translationally controlled tumor-like protein; Provisional
Probab=29.34 E-value=1.1e+02 Score=20.14 Aligned_cols=40 Identities=15% Similarity=0.307 Sum_probs=20.8
Q ss_pred HHhhCCCeEEEEEeCCCCh---hhHhhcCCCCccEEEEEeCCe
Q 045454 69 LADKYPSMICLTVDVDELP---EFSNSWGVTATPTFFFLKDGR 108 (133)
Q Consensus 69 ~~~~~~~v~~~~id~d~~~---~~~~~~~v~~~P~~~~~~~g~ 108 (133)
+...++++.|+.-..-... .++..-+-..+|.++++++|=
T Consensus 125 il~~Fkd~qFf~GeSmd~dgmv~l~~Yredg~tP~~~f~KdGL 167 (172)
T PTZ00151 125 ILENFDDFEFYLGESLDCEAGLIYGYYKGEELAPRFVYIKDGL 167 (172)
T ss_pred HHHhcCCceEeecCCCCCCccEEEEeecCCCcceEEEEEcccc
Confidence 3334556777654322111 121111233589999998883
No 363
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.28 E-value=72 Score=20.65 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=15.3
Q ss_pred hhCCcEEEEEEecCCChh
Q 045454 41 IKDGKIVVANFSAQWCSP 58 (133)
Q Consensus 41 ~~~~~~~lv~f~~~~C~~ 58 (133)
.+.++++++.|++-|-.+
T Consensus 130 ~e~dkp~LilfGTGwGlp 147 (190)
T COG4752 130 QERDKPWLILFGTGWGLP 147 (190)
T ss_pred hhcCCcEEEEecCCCCCC
Confidence 367999999999999754
No 364
>PLN02378 glutathione S-transferase DHAR1
Probab=28.67 E-value=1.5e+02 Score=19.78 Aligned_cols=50 Identities=10% Similarity=0.069 Sum_probs=30.5
Q ss_pred CCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCCh-hhHhhcCCCCccEEEEEeCCe
Q 045454 54 QWCSPCKKIAPVYIQLADKYPSMICLTVDVDELP-EFSNSWGVTATPTFFFLKDGR 108 (133)
Q Consensus 54 ~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~-~~~~~~~v~~~P~~~~~~~g~ 108 (133)
.+|++|++..-.+....-. +.+..+|....+ .+.+..-...+|++. .+|.
T Consensus 18 ~~~p~~~rv~~~L~e~gl~---~e~~~v~~~~~~~~~l~inP~G~VPvL~--~~~~ 68 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLT---YKIHLINLSDKPQWFLDISPQGKVPVLK--IDDK 68 (213)
T ss_pred CCCcchHHHHHHHHHcCCC---CeEEEeCcccCCHHHHHhCCCCCCCEEE--ECCE
Confidence 4599999988777665433 445556654333 444444456799885 3453
No 365
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=28.05 E-value=1.2e+02 Score=21.41 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=21.4
Q ss_pred CeEEEEEeCCCChhhHhhcCCCCccE
Q 045454 75 SMICLTVDVDELPEFSNSWGVTATPT 100 (133)
Q Consensus 75 ~v~~~~id~d~~~~~~~~~~v~~~P~ 100 (133)
+..+..+|+|++..+...+|+..-|.
T Consensus 29 ~~~VLvVDaDpd~nL~~~LGve~~~~ 54 (255)
T COG3640 29 GYNVLVVDADPDSNLPEALGVEEPMK 54 (255)
T ss_pred CceEEEEeCCCCCChHHhcCCCCCCc
Confidence 37889999999999999998875443
No 366
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=27.15 E-value=1.8e+02 Score=18.71 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCChhhhhhhHHHHHHHhhC
Q 045454 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKY 73 (133)
Q Consensus 44 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~ 73 (133)
++...+++-.+-|.+|+ ..+..++++.
T Consensus 99 g~~~tm~Vdr~vC~~C~---~~i~~~a~~l 125 (146)
T PF14437_consen 99 GRSMTMYVDRDVCGYCG---GDIPSMAEKL 125 (146)
T ss_pred CCeEEEEECcccchHHH---HHHHHHHHHc
Confidence 66777888899999999 6667777776
No 367
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=26.97 E-value=21 Score=26.54 Aligned_cols=47 Identities=17% Similarity=0.243 Sum_probs=0.0
Q ss_pred CChhhHhhcCCCCccEEEEEeCCeEEEEeeCCCHHHHHHHHHHHHHh
Q 045454 85 ELPEFSNSWGVTATPTFFFLKDGRQIDKLIGSNKLELQRKTAAVSKL 131 (133)
Q Consensus 85 ~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~~~~~~~~~ 131 (133)
.-.++++.|||+.+=...+-.-|--+..+.+...++|+++|+.+.+.
T Consensus 50 ~LEdLF~~YGVRy~T~AKIaElGFTvsTLl~M~deELDdmM~sL~~i 96 (386)
T PF01698_consen 50 GLEDLFQGYGVRYYTAAKIAELGFTVSTLLNMTDEELDDMMNSLSQI 96 (386)
T ss_dssp -----------------------------------------------
T ss_pred hHHHHHhhccccHHHHHHHHHhcccHHHHhcccHHHHHHHHHHHHHH
Confidence 45678888999866544444567777788888888888888877654
No 368
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=26.87 E-value=2.9e+02 Score=21.05 Aligned_cols=61 Identities=18% Similarity=0.132 Sum_probs=39.8
Q ss_pred CcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhh----Hhhc-CCCCccEEEEE
Q 045454 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEF----SNSW-GVTATPTFFFL 104 (133)
Q Consensus 44 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~----~~~~-~v~~~P~~~~~ 104 (133)
..+.|-.||+.....=......++.++++++++.+-.+|...++.+ ..++ +-...|++++.
T Consensus 342 s~~~V~L~Y~~~n~e~~~y~~eLr~~~qkl~~~~lHiiDSs~~g~l~~e~ler~~~~~~~~sv~fC 407 (438)
T COG4097 342 SDPPVHLFYCSRNWEEALYAEELRALAQKLPNVVLHIIDSSKDGYLDQEDLERYPDRPRTRSVFFC 407 (438)
T ss_pred cCCceEEEEEecCCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccCHHHhhccccccCcceEEEE
Confidence 4444555666655555566678888999999988877888776643 3333 33346677766
No 369
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=26.59 E-value=2.1e+02 Score=19.75 Aligned_cols=48 Identities=13% Similarity=0.040 Sum_probs=32.9
Q ss_pred chhhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeC
Q 045454 29 TMVSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDV 83 (133)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~ 83 (133)
+.+++.+.+.....++ .-+|.. ....+.+.+.+++.++|+..|+.+|.
T Consensus 42 ~~~~~~~~i~~~~~~g-~dlIi~------~g~~~~~~~~~vA~~~p~~~F~~~d~ 89 (258)
T cd06353 42 EGADAERVLRELAAQG-YDLIFG------TSFGFMDAALKVAKEYPDVKFEHCSG 89 (258)
T ss_pred chHhHHHHHHHHHHcC-CCEEEE------CchhhhHHHHHHHHHCCCCEEEECCC
Confidence 4456677776553333 333322 56677888999999999999988875
No 370
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=26.39 E-value=26 Score=22.29 Aligned_cols=13 Identities=23% Similarity=0.728 Sum_probs=11.6
Q ss_pred CChhhhhhhHHHH
Q 045454 55 WCSPCKKIAPVYI 67 (133)
Q Consensus 55 ~C~~C~~~~~~l~ 67 (133)
-||+|++..|.|.
T Consensus 11 ~CPhCRQ~ipALt 23 (163)
T TIGR02652 11 RCPHCRQNIPALT 23 (163)
T ss_pred cCchhhcccchhe
Confidence 6999999999885
No 371
>PF03197 FRD2: Bacteriophage FRD2 protein; InterPro: IPR004885 This is group of bacteriophage proteins has no known function.
Probab=26.39 E-value=96 Score=18.40 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=26.4
Q ss_pred CCccccc-cccccccccccccCcCeEEeechhhHHHHHhhh
Q 045454 1 CCRRDVE-EDDDECRDHVEFASKNVHLITTMVSWEAKVSES 40 (133)
Q Consensus 1 c~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 40 (133)
||+.+.. +.+....+..+.....++-+.+.++.++.+...
T Consensus 56 ~~F~E~~~~~de~~~~v~~~gvt~IHciVde~NvdeIIeLl 96 (102)
T PF03197_consen 56 YCFREVDSEKDEVDDPVIKSGVTKIHCIVDENNVDEIIELL 96 (102)
T ss_pred hhheeecccCccccCcccccCceEEEEEEccCCHHHHHHHH
Confidence 5666664 333334444567777888888888888877643
No 372
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=26.25 E-value=25 Score=22.29 Aligned_cols=13 Identities=23% Similarity=0.756 Sum_probs=11.6
Q ss_pred CChhhhhhhHHHH
Q 045454 55 WCSPCKKIAPVYI 67 (133)
Q Consensus 55 ~C~~C~~~~~~l~ 67 (133)
.||+|++..|.|.
T Consensus 8 ~CPhCRq~ipALt 20 (161)
T PF09654_consen 8 QCPHCRQTIPALT 20 (161)
T ss_pred cCchhhcccchhe
Confidence 6999999999885
No 373
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=25.78 E-value=48 Score=20.11 Aligned_cols=18 Identities=11% Similarity=0.455 Sum_probs=15.4
Q ss_pred CCChhhhhhhHHHHHHHh
Q 045454 54 QWCSPCKKIAPVYIQLAD 71 (133)
Q Consensus 54 ~~C~~C~~~~~~l~~~~~ 71 (133)
.=|.+|+.+...+.++..
T Consensus 84 RvC~DCH~~~K~iS~~~~ 101 (116)
T PF14432_consen 84 RVCGDCHSFIKFISKITG 101 (116)
T ss_pred ccchHHHHHHHHHHHHHC
Confidence 669999999999988754
No 374
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=25.62 E-value=2.3e+02 Score=19.90 Aligned_cols=47 Identities=15% Similarity=0.104 Sum_probs=29.6
Q ss_pred CCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCCh-hhHhhcCCCCccEEEE
Q 045454 54 QWCSPCKKIAPVYIQLADKYPSMICLTVDVDELP-EFSNSWGVTATPTFFF 103 (133)
Q Consensus 54 ~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~-~~~~~~~v~~~P~~~~ 103 (133)
.+||+|++.+-.|....-. +.+..+|..+.+ .+.+..-...+|++..
T Consensus 71 g~cp~s~rV~i~L~ekgi~---ye~~~vdl~~~~~~fl~iNP~GkVPvL~~ 118 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLP---YDMKLVDLTNKPEWFLKISPEGKVPVVKL 118 (265)
T ss_pred CCCcHHHHHHHHHHHcCCC---CEEEEeCcCcCCHHHHhhCCCCCCCEEEE
Confidence 3599999988888665433 455566665533 3433334557999873
No 375
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=24.78 E-value=2.2e+02 Score=19.03 Aligned_cols=83 Identities=20% Similarity=0.162 Sum_probs=46.8
Q ss_pred hCCcEEEEE-EecCCChhhhhhhHHHHHHHhhCCC-eEEEEEeCCCChhhHhhcCCCCccEEEEEeC---CeEEEEeeCC
Q 045454 42 KDGKIVVAN-FSAQWCSPCKKIAPVYIQLADKYPS-MICLTVDVDELPEFSNSWGVTATPTFFFLKD---GRQIDKLIGS 116 (133)
Q Consensus 42 ~~~~~~lv~-f~~~~C~~C~~~~~~l~~~~~~~~~-v~~~~id~d~~~~~~~~~~v~~~P~~~~~~~---g~~~~~~~g~ 116 (133)
.+.+..+.. +.+.+-+ ......++.+...-.+ +.+...+.+.....+++..-.++|.+.+... ......+.|.
T Consensus 25 ~~~g~~~~~~~~~~~d~--~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~~~~~~~~~~~v~~ 102 (257)
T PF13407_consen 25 KELGYEVEIVFDAQNDP--EEQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSDEAPDSPRAAYVGT 102 (257)
T ss_dssp HHHTCEEEEEEESTTTH--HHHHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESSTHHTTSTSSEEEEE
T ss_pred HHcCCEEEEeCCCCCCH--HHHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEeccccccccceeeeec
Confidence 334444444 4555555 5566777776554444 5444455666667777777778888887644 2333345565
Q ss_pred CHHHHHHHHH
Q 045454 117 NKLELQRKTA 126 (133)
Q Consensus 117 ~~~~l~~~~~ 126 (133)
+..++-..+.
T Consensus 103 d~~~~G~~~a 112 (257)
T PF13407_consen 103 DNYEAGKLAA 112 (257)
T ss_dssp -HHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 5555444433
No 376
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=24.61 E-value=1.5e+02 Score=21.59 Aligned_cols=39 Identities=13% Similarity=0.149 Sum_probs=29.5
Q ss_pred CcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCC
Q 045454 44 GKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDE 85 (133)
Q Consensus 44 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~ 85 (133)
....+|.+ .|+.|......|..+....+.+.++.+|++.
T Consensus 76 ~~~~lIEL---GsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~ 114 (319)
T TIGR03439 76 SGSMLVEL---GSGNLRKVGILLEALERQKKSVDYYALDVSR 114 (319)
T ss_pred CCCEEEEE---CCCchHHHHHHHHHHHhcCCCceEEEEECCH
Confidence 34467766 6788899999998887555568889999875
No 377
>PRK13817 ribosome-binding factor A; Provisional
Probab=24.52 E-value=1.7e+02 Score=17.88 Aligned_cols=36 Identities=8% Similarity=0.004 Sum_probs=23.2
Q ss_pred hhHhhcCCCCccEEEEEeCCeEEEEeeCCCHHHHHHHHHHHH
Q 045454 88 EFSNSWGVTATPTFFFLKDGRQIDKLIGSNKLELQRKTAAVS 129 (133)
Q Consensus 88 ~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~l~~~~~~~~ 129 (133)
.+.++..++.+|.+.|+.+...- ....+.+.++++.
T Consensus 75 ~l~~~l~lR~~PeL~F~~D~s~e------~~~~I~~Ll~~l~ 110 (119)
T PRK13817 75 LLAQATVLRYVPKLEFVYDESIE------RAHRISLLIERAL 110 (119)
T ss_pred HHHHhCCCeECCEEEEEEcCchH------HHHHHHHHHHHHH
Confidence 35677789999999988654221 3455555555543
No 378
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=24.40 E-value=1.8e+02 Score=18.14 Aligned_cols=48 Identities=13% Similarity=0.221 Sum_probs=32.8
Q ss_pred HhhhhhCCcEEEEEEecCC------ChhhhhhhHHHHHHHhhCCCeEEEEEeCC
Q 045454 37 VSESIKDGKIVVANFSAQW------CSPCKKIAPVYIQLADKYPSMICLTVDVD 84 (133)
Q Consensus 37 ~~~~~~~~~~~lv~f~~~~------C~~C~~~~~~l~~~~~~~~~v~~~~id~d 84 (133)
+.....+.++..++++-|. .+.|+..+.+.+.+++.++++.+..+|-.
T Consensus 43 l~~li~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~ipV~~~DEr 96 (135)
T PF03652_consen 43 LKKLIEEYQIDGIVVGLPLNMDGSESEQARRVRKFAEELKKRFPGIPVILVDER 96 (135)
T ss_dssp HHHHHHHCCECEEEEEEEBBCTSSC-CCHHHHHHHHHHHHHHH-TSEEEEEECS
T ss_pred HHHHHHHhCCCEEEEeCCcccCCCccHHHHHHHHHHHHHHHhcCCCcEEEECCC
Confidence 3333356777788888764 45677777778888888888888778753
No 379
>KOG2868 consensus Decapping enzyme complex component DCP1 [Transcription; RNA processing and modification]
Probab=24.26 E-value=1.8e+02 Score=21.39 Aligned_cols=36 Identities=17% Similarity=0.172 Sum_probs=22.3
Q ss_pred hhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCC
Q 045454 60 KKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTA 97 (133)
Q Consensus 60 ~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~ 97 (133)
++..|+++++....+-+.+|..|...+. +.+.++.+
T Consensus 21 ~r~DP~ik~Ild~ashva~Y~fd~~~~e--WnKtdiEG 56 (335)
T KOG2868|consen 21 QRIDPYIKSILDVASHVALYTFDFGANE--WNKTDIEG 56 (335)
T ss_pred hhhCHHHHHHHhhccceeEEEeccccch--hhhcccee
Confidence 3456777777766666778887776443 34444444
No 380
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=24.18 E-value=87 Score=21.03 Aligned_cols=46 Identities=11% Similarity=0.083 Sum_probs=28.4
Q ss_pred CCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCccEEE
Q 045454 54 QWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFF 102 (133)
Q Consensus 54 ~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~P~~~ 102 (133)
.-||+|.+++-.+.-... .+....++-|+..+-.+.-|-+.+|-+.
T Consensus 7 dHCPfcvrarmi~Gl~ni---pve~~vL~nDDe~Tp~rmiG~KqVPiL~ 52 (215)
T COG2999 7 DHCPFCVRARMIFGLKNI---PVELHVLLNDDEETPIRMIGQKQVPILQ 52 (215)
T ss_pred ccChHHHHHHHHhhccCC---ChhhheeccCcccChhhhhcccccceEE
Confidence 579999988755432211 2333444555555556777888888765
No 381
>PHA02151 hypothetical protein
Probab=24.10 E-value=53 Score=21.42 Aligned_cols=15 Identities=20% Similarity=0.634 Sum_probs=11.1
Q ss_pred CCcEEEEEEecCCCh
Q 045454 43 DGKIVVANFSAQWCS 57 (133)
Q Consensus 43 ~~~~~lv~f~~~~C~ 57 (133)
.+..-.|+||..||-
T Consensus 202 r~h~~~v~fy~kwct 216 (217)
T PHA02151 202 RNHDRYVHFYKKWCT 216 (217)
T ss_pred ccCceEEEEehhhcc
Confidence 344556799999994
No 382
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=24.04 E-value=2.6e+02 Score=19.86 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=30.6
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHhhCC-----CeEEEEEeCCC
Q 045454 47 VVANFSAQWCSPCKKIAPVYIQLADKYP-----SMICLTVDVDE 85 (133)
Q Consensus 47 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~-----~v~~~~id~d~ 85 (133)
-.+.+|+..|..-++-...---+.+..+ ++.+...|+|.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~ 139 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDL 139 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCH
Confidence 5778999999888887777666666553 48999999874
No 383
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=24.04 E-value=86 Score=21.33 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=24.7
Q ss_pred EEEEEEecCCChhhhhhhHHHHHHHhhC
Q 045454 46 IVVANFSAQWCSPCKKIAPVYIQLADKY 73 (133)
Q Consensus 46 ~~lv~f~~~~C~~C~~~~~~l~~~~~~~ 73 (133)
..|.|++-|=|+.|--+.|.++++....
T Consensus 2 ~~lhYifDPmCgWCyGa~Pll~~l~~~~ 29 (212)
T COG3531 2 VTLHYIFDPMCGWCYGAAPLLEALSAQP 29 (212)
T ss_pred ceeEEecCcchhhhhCccHHHHHHHhcC
Confidence 3577899999999999999999998765
No 384
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=23.86 E-value=1.3e+02 Score=16.19 Aligned_cols=49 Identities=16% Similarity=0.115 Sum_probs=28.7
Q ss_pred EecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCC----CChhhHhhcCCCCccEEE
Q 045454 51 FSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVD----ELPEFSNSWGVTATPTFF 102 (133)
Q Consensus 51 f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d----~~~~~~~~~~v~~~P~~~ 102 (133)
+|...++.|.+.+-.++...-. +....++.. ..+++.+......+|++.
T Consensus 4 Ly~~~~~~~~~v~~~l~~~gl~---~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (81)
T cd03048 4 LYTHGTPNGFKVSIMLEELGLP---YEIHPVDISKGEQKKPEFLKINPNGRIPAIV 56 (81)
T ss_pred EEeCCCCChHHHHHHHHHcCCC---cEEEEecCcCCcccCHHHHHhCcCCCCCEEE
Confidence 4433359998888888776433 333445532 224444444566799885
No 385
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=23.64 E-value=17 Score=25.58 Aligned_cols=11 Identities=27% Similarity=1.171 Sum_probs=7.4
Q ss_pred CCChhhhhhhH
Q 045454 54 QWCSPCKKIAP 64 (133)
Q Consensus 54 ~~C~~C~~~~~ 64 (133)
.|||.|+...|
T Consensus 256 y~Cp~CQ~~~~ 266 (269)
T PRK14811 256 HFCPQCQPLRP 266 (269)
T ss_pred EECCCCcCCCC
Confidence 37888876654
No 386
>PF11317 DUF3119: Protein of unknown function (DUF3119); InterPro: IPR021467 This family of proteins has no known function.
Probab=23.44 E-value=1.9e+02 Score=17.79 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=27.0
Q ss_pred CCccEEEEEeCCeEEEEeeCC-CHHHHHHHHHHH
Q 045454 96 TATPTFFFLKDGRQIDKLIGS-NKLELQRKTAAV 128 (133)
Q Consensus 96 ~~~P~~~~~~~g~~~~~~~g~-~~~~l~~~~~~~ 128 (133)
..+|.++.|++-+.++-+.-. +...|.+.+++-
T Consensus 81 p~~PiL~YFkE~qsiHFlPiiFd~~~L~~~l~~r 114 (116)
T PF11317_consen 81 PGFPILFYFKETQSIHFLPIIFDPKQLREQLEER 114 (116)
T ss_pred CCCCEEEEEecCCcceeeeeecCHHHHHHHHHHh
Confidence 378999999998888887777 888888877653
No 387
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=22.16 E-value=1.4e+02 Score=19.67 Aligned_cols=27 Identities=4% Similarity=0.086 Sum_probs=20.6
Q ss_pred EeechhhHHHHHhhhhhCCcEEEEEEe
Q 045454 26 LITTMVSWEAKVSESIKDGKIVVANFS 52 (133)
Q Consensus 26 ~i~~~~~~~~~~~~~~~~~~~~lv~f~ 52 (133)
.+.+.+++.+.+.+++..+++.+|.+.
T Consensus 156 ~v~~~~el~~al~~al~~~gp~vIev~ 182 (193)
T cd03375 156 FSGDIKQLKEIIKKAIQHKGFSFVEVL 182 (193)
T ss_pred ecCCHHHHHHHHHHHHhcCCCEEEEEE
Confidence 456777888888877777788888876
No 388
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=22.07 E-value=73 Score=19.47 Aligned_cols=15 Identities=27% Similarity=0.291 Sum_probs=12.7
Q ss_pred HhhcCCCCccEEEEE
Q 045454 90 SNSWGVTATPTFFFL 104 (133)
Q Consensus 90 ~~~~~v~~~P~~~~~ 104 (133)
+..||++.+|.++|.
T Consensus 77 Aw~lGi~k~PAVV~D 91 (113)
T TIGR03757 77 AWQLGVTKIPAVVVD 91 (113)
T ss_pred HHHcCCccCCEEEEc
Confidence 556799999999977
No 389
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.83 E-value=2.8e+02 Score=19.20 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=24.1
Q ss_pred cEEEEEEecCCChhhhhhhHHHHHHHhhCCC
Q 045454 45 KIVVANFSAQWCSPCKKIAPVYIQLADKYPS 75 (133)
Q Consensus 45 ~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~ 75 (133)
+..+-.|.-.-||.|-...+.|+++...+++
T Consensus 5 ~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~ 35 (225)
T COG2761 5 KIEIDVFSDVVCPWCYIGKRRLEKALAEYPQ 35 (225)
T ss_pred eEEEEEEeCCcCchhhcCHHHHHHHHHhcCc
Confidence 3444445556899999999999999888874
No 390
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=21.74 E-value=1.6e+02 Score=16.18 Aligned_cols=57 Identities=12% Similarity=0.154 Sum_probs=37.2
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeC-CCChhhHhhc-CCCCccEEEE
Q 045454 47 VVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDV-DELPEFSNSW-GVTATPTFFF 103 (133)
Q Consensus 47 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~-d~~~~~~~~~-~v~~~P~~~~ 103 (133)
.|+.=....+..-..+...|.++...++++.++.-.+ .-...++.+| .-+++|.+.+
T Consensus 5 rVli~GgR~~~D~~~i~~~Ld~~~~~~~~~~lvhGga~~GaD~iA~~wA~~~gv~~~~~ 63 (71)
T PF10686_consen 5 RVLITGGRDWTDHELIWAALDKVHARHPDMVLVHGGAPKGADRIAARWARERGVPVIRF 63 (71)
T ss_pred EEEEEECCccccHHHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHHHCCCeeEEe
Confidence 4444555566677777888888888888877777777 4555566666 3445665543
No 391
>TIGR03544 DivI1A_domain DivIVA domain. This model describes a domain found in Bacillus subtilis cell division initiation protein DivIVA, and homologs, toward the N-terminus. It is also found as a repeated domain in certain other proteins, including family TIGR03543.
Probab=21.50 E-value=1e+02 Score=14.06 Aligned_cols=18 Identities=17% Similarity=0.078 Sum_probs=14.9
Q ss_pred eCCCHHHHHHHHHHHHHh
Q 045454 114 IGSNKLELQRKTAAVSKL 131 (133)
Q Consensus 114 ~g~~~~~l~~~~~~~~~~ 131 (133)
.|.+..+...+++++.+.
T Consensus 16 rGY~~~eVD~fLd~v~~~ 33 (34)
T TIGR03544 16 RGYDAAEVDAFLDRVADD 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 477999999999988764
No 392
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=21.29 E-value=2.9e+02 Score=19.95 Aligned_cols=98 Identities=8% Similarity=-0.052 Sum_probs=53.0
Q ss_pred hhHHHHHhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeC--CC-ChhhHhhcC-CCCccEEEEEeC
Q 045454 31 VSWEAKVSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDV--DE-LPEFSNSWG-VTATPTFFFLKD 106 (133)
Q Consensus 31 ~~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~--d~-~~~~~~~~~-v~~~P~~~~~~~ 106 (133)
++....++.. ......|..|++.|..=..+.|..+...-+. -+.+...|- +. +.++..+|. ..+.|.+..+--
T Consensus 63 ~~~~sDLe~l--~~~t~~IR~Y~sDCn~le~v~pAa~~~g~kv-~lGiw~tdd~~~~~~~til~ay~~~~~~d~v~~v~V 139 (305)
T COG5309 63 DQVASDLELL--ASYTHSIRTYGSDCNTLENVLPAAEASGFKV-FLGIWPTDDIHDAVEKTILSAYLPYNGWDDVTTVTV 139 (305)
T ss_pred HHHHhHHHHh--ccCCceEEEeeccchhhhhhHHHHHhcCceE-EEEEeeccchhhhHHHHHHHHHhccCCCCceEEEEe
Confidence 3444444432 3444478888988876666666555443110 012222221 11 225666665 456888887744
Q ss_pred CeEEEEeeCC-CHHHHHHHHHHHHHhh
Q 045454 107 GRQIDKLIGS-NKLELQRKTAAVSKLL 132 (133)
Q Consensus 107 g~~~~~~~g~-~~~~l~~~~~~~~~~~ 132 (133)
|... .+.+. +..+|.+.|......+
T Consensus 140 GnEa-l~r~~~tasql~~~I~~vrsav 165 (305)
T COG5309 140 GNEA-LNRNDLTASQLIEYIDDVRSAV 165 (305)
T ss_pred chhh-hhcCCCCHHHHHHHHHHHHHHH
Confidence 4332 12244 8889998888775544
No 393
>PF11858 DUF3378: Domain of unknown function (DUF3378); InterPro: IPR024568 Ribonuclease HIII 3.1.26 from EC cleaves RNA from DNA-RNA hybrids. It catalyses endonucleolytic cleavage to 5'-phospho-monoesters. Two types of ribonuclease H in Bacillus subtilis, RNase HII (rnhB) and RNase HIII (rnhC), are both known experimentally and are quite similar to each other []. The only RNase H homologue in the Mycoplasmas resembles rnhC. Archaeal forms resemble HII more closely than HIII. This entry represents the uncharacterised N-terminal domain of bacterial RNase HIII.; PDB: 3ASM_A 2D0C_A 2D0B_A 2D0A_A.
Probab=21.24 E-value=1.7e+02 Score=16.54 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=16.3
Q ss_pred EEEEEeCCeEEEEeeCCCHHHHHHHH
Q 045454 100 TFFFLKDGRQIDKLIGSNKLELQRKT 125 (133)
Q Consensus 100 ~~~~~~~g~~~~~~~g~~~~~l~~~~ 125 (133)
++.+|..|+++ +.|.+.+.+....
T Consensus 41 tIt~Y~SGKV~--FQG~~Ae~~A~~~ 64 (81)
T PF11858_consen 41 TITAYKSGKVV--FQGKNAEQEAAKW 64 (81)
T ss_dssp EEEEETTSEEE--EESTTHHHHHHTT
T ss_pred EEEEEeCCeEE--EECCCHHHHHHHh
Confidence 45567889997 5588776665543
No 394
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=21.22 E-value=59 Score=22.60 Aligned_cols=57 Identities=14% Similarity=0.134 Sum_probs=31.9
Q ss_pred HhhhhhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCC
Q 045454 37 VSESIKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGV 95 (133)
Q Consensus 37 ~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v 95 (133)
+.++...++++. -+.+.++.++.+...++++...........++.++-..+..+||+
T Consensus 214 v~~A~~~g~pv~--~~~p~s~~a~~~~~la~ell~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (275)
T TIGR01287 214 VQKAEIRKMTVI--EYDPESEQANEYRELAKKIYENTEFVIPTPLTMDELEEILMKFGI 270 (275)
T ss_pred HHHHHHcCCceE--EeCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 333334555553 346777777777777777665443333344445555566666654
No 395
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=20.83 E-value=1.4e+02 Score=15.43 Aligned_cols=49 Identities=12% Similarity=0.036 Sum_probs=26.3
Q ss_pred EecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCC----CChhhHhhcCCCCccEEE
Q 045454 51 FSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVD----ELPEFSNSWGVTATPTFF 102 (133)
Q Consensus 51 f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d----~~~~~~~~~~v~~~P~~~ 102 (133)
++...|+.|.+.+-.+..... .+....++.. ..+++.+......+|++.
T Consensus 4 ~~~~~~~~~~~~~~~l~~~gi---~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (73)
T cd03042 4 YSYFRSSASYRVRIALNLKGL---DYEYVPVNLLKGEQLSPAYRALNPQGLVPTLV 56 (73)
T ss_pred ecCCCCcchHHHHHHHHHcCC---CCeEEEecCccCCcCChHHHHhCCCCCCCEEE
Confidence 445566666666555554422 2344445542 234444444567899885
No 396
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=20.65 E-value=1.9e+02 Score=21.48 Aligned_cols=83 Identities=16% Similarity=0.157 Sum_probs=51.0
Q ss_pred eechhhHHHHHhhh-hhCCcEEEEEEecCCChhhhhhhHHHHHHHhhCCCeEEEEEeCCCChhhHhhcCCCCccEEEEEe
Q 045454 27 ITTMVSWEAKVSES-IKDGKIVVANFSAQWCSPCKKIAPVYIQLADKYPSMICLTVDVDELPEFSNSWGVTATPTFFFLK 105 (133)
Q Consensus 27 i~~~~~~~~~~~~~-~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~id~d~~~~~~~~~~v~~~P~~~~~~ 105 (133)
.+++.+|....... .+=+.+.|=.-|.-.|..|...+.+..+-+++-+++-+-...-|-+-.-++=++..+ ...+-.
T Consensus 47 asDGrty~srCe~qRAkC~dpql~~~yrG~Ck~C~~erk~a~eQa~k~~~vFvPeC~~DG~f~qvQCh~ytG--CWCvtp 124 (421)
T KOG4578|consen 47 ASDGRTYPSRCELQRAKCGDPQLSLKYRGSCKACLEERKFAREQAEKDPGVFVPECRKDGNFAQVQCHGYTG--CWCVTP 124 (421)
T ss_pred ccCCccchhHHHHHHhhcCCCceeEEecCcHHHHHHHHHHHHHhhhcCCceecccccCCCCeeeEEeccccc--eEEeCC
Confidence 34556666544322 134567777789999999999998887777665665444444454444445555555 444445
Q ss_pred CCeEEE
Q 045454 106 DGRQID 111 (133)
Q Consensus 106 ~g~~~~ 111 (133)
+|+.|.
T Consensus 125 ~GrPIs 130 (421)
T KOG4578|consen 125 QGRPIS 130 (421)
T ss_pred CCcccC
Confidence 665543
No 397
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=20.55 E-value=2.3e+02 Score=17.62 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=22.8
Q ss_pred CeEEeech--hhHHHHHhhhhhCCcEEEEEE
Q 045454 23 NVHLITTM--VSWEAKVSESIKDGKIVVANF 51 (133)
Q Consensus 23 ~~~~i~~~--~~~~~~~~~~~~~~~~~lv~f 51 (133)
....+++. +++.+.+.++...+++.||.+
T Consensus 123 ~~~~v~~~~~~el~~al~~a~~~~gp~vIeV 153 (153)
T PF02775_consen 123 KGARVTTPDPEELEEALREALESGGPAVIEV 153 (153)
T ss_dssp EEEEESCHSHHHHHHHHHHHHHSSSEEEEEE
T ss_pred cEEEEccCCHHHHHHHHHHHHhCCCcEEEEc
Confidence 35566676 899999998888889998864
No 398
>PRK11633 cell division protein DedD; Provisional
Probab=20.52 E-value=1.8e+02 Score=20.14 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=35.3
Q ss_pred CCChhhHhhcCCCCccEEEEE---eCCeEEEEeeCC--CHHHHHHHHHHHHHh
Q 045454 84 DELPEFSNSWGVTATPTFFFL---KDGRQIDKLIGS--NKLELQRKTAAVSKL 131 (133)
Q Consensus 84 d~~~~~~~~~~v~~~P~~~~~---~~g~~~~~~~g~--~~~~l~~~~~~~~~~ 131 (133)
++...+..++...++..++.- .+|+....++|. +..++++.+.++.+.
T Consensus 161 ~~A~~l~~kL~~~G~~Ay~~~~~~~~G~~tRV~VGP~~sk~~ae~~~~~Lk~~ 213 (226)
T PRK11633 161 DKVNEIVAKLRLSGYRVYTVPSTPVQGKITRIYVGPDASKDKLKGSLGELKQL 213 (226)
T ss_pred HHHHHHHHHHHHCCCeeEEEeeecCCCcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 344567777777888887743 567776677898 888999888887653
Done!