BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045456
(288 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 234 NFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK 269
+ Y ++G RG LL+GPPGTGK+ L+ A+AN K
Sbjct: 196 DLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK 231
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 245 RGYLLFGPPGTGKSSL---IAAMANYLKFNIYDMELTSVYC 282
RG LLFGPPG GK+ L +AA +N FNI LTS Y
Sbjct: 149 RGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYV 189
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 229 FVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSL---IAAMANYLKFNIYDMELTSVYCN 283
F+K + + R+G +G LL GPPGTGK+ L +A AN F+I + ++
Sbjct: 34 FLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVG 91
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 230 VKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFN 271
+K ++RVG +G LL+GPPGTGK+ L A+A + N
Sbjct: 201 LKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN 242
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 235 FYRRVGKVWKRGYLLFGPPGTGKSSLIAAMAN 266
++ +G RG LL+GPPGTGK+ + A+AN
Sbjct: 229 LFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 235 FYRRVGKVWKRGYLLFGPPGTGKSSLIAAMAN 266
++ +G RG LL+GPPGTGK+ + A+AN
Sbjct: 229 LFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 235 FYRRVGKVWKRGYLLFGPPGTGKSSLIAAMAN 266
++ +G RG LL+GPPGTGK+ + A+AN
Sbjct: 229 LFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 230 VKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANY 267
VK + +G +G +L+GPPGTGK+ L A+A++
Sbjct: 168 VKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH 205
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 235 FYRRVGKVWKRGYLLFGPPGTGKSSLIAAMAN 266
++ +G RG LL+GPPGTGK+ + A+AN
Sbjct: 229 LFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 209 FDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL 268
F +A + K+ ++ +D F+K Y +G +G LL GPPGTGK+ L A+A
Sbjct: 10 FKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68
Query: 269 KFNIYDM 275
+ M
Sbjct: 69 HVPFFSM 75
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 235 FYRRVGKVWKRGYLLFGPPGTGKSSLIAAMAN 266
++ +G RG LL+GPPGTGK+ + A+AN
Sbjct: 229 LFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 220 QASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFN 271
Q ++ D+F+K G +G L +GPPG GK+ L A+AN + N
Sbjct: 494 QYPVEHPDKFLK-------FGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 245 RGYLLFGPPGTGKSSLIAAMA----NYLKFNIYDMELTSVY 281
RG LLFGPPGTGKS L A+A N F+I +L S +
Sbjct: 168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKW 208
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 235 FYRRVGKVWKRGYLLFGPPGTGKSSLIAAMAN 266
++ +G RG LL+GPPGTGK+ + A+AN
Sbjct: 229 LFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 220 QASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFN 271
Q ++ D+F+K G +G L +GPPG GK+ L A+AN + N
Sbjct: 494 QYPVEHPDKFLK-------FGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 245 RGYLLFGPPGTGKSSLIAAMA----NYLKFNIYDMELTSVY 281
RG LLFGPPGTGKS L A+A N F+I +L S +
Sbjct: 46 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKW 86
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 229 FVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSL---IAAMANYLKFNIYDMELTSVYCN 283
F+K + + R+G +G LL GPPGTG + L +A AN F+I + ++
Sbjct: 34 FLKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGEANVPFFHISGSDFVELFVG 91
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 230 VKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMA 265
+K + +VG +G LL+GPPGTGK+ L A+A
Sbjct: 37 LKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVA 72
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 230 VKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDM---ELTSVY 281
V+ + ++ +G V G LL GPPG GK+ L A+AN N + EL ++Y
Sbjct: 30 VRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 230 VKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMA 265
+KR + ++ +G +G L++GPPGTGK+ L A A
Sbjct: 201 MKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACA 236
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 208 TFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANY 267
TF +A K+ + +L +++ + ++++G +G L+ GPPGTGK+ L A+A
Sbjct: 10 TFADVAGCDEAKE-EVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68
Query: 268 LKFNIY 273
K +
Sbjct: 69 AKVPFF 74
>pdb|3JVV|A Chain A, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|B Chain B, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|C Chain C, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVU|A Chain A, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|B Chain B, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|C Chain C, Crystal Structure Of Unliganded P. Aeruginosa Pilt
Length = 356
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 236 YRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELT 278
++RV V + L+ GP G+GKS+ +AAM +YL Y LT
Sbjct: 115 FKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILT 157
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 220 QASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFN 271
Q ++ D+F+K G +G L +GPPG GK+ L A+AN + N
Sbjct: 32 QYPVEHPDKFLK-------FGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 76
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 245 RGYLLFGPPGTGKSSLIAAMANYLK---FNIYDMELTSVYCN 283
+G LLFGPPG GK+ L A+A NI LTS Y
Sbjct: 55 KGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVG 96
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 246 GYLLFGPPGTGKSSL---IAAMANYLKFNIYDMELTSVY 281
G LL+GPPGTGKS L +A AN F++ +L S +
Sbjct: 86 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW 124
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 34.7 bits (78), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 246 GYLLFGPPGTGKSSL---IAAMANYLKFNIYDMELTSVY 281
G LL+GPPGTGKS L +A AN F++ +L S +
Sbjct: 53 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW 91
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 246 GYLLFGPPGTGKSSL---IAAMANYLKFNIYDMELTSVY 281
G LL+GPPGTGKS L +A AN F++ +L S +
Sbjct: 62 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW 100
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 246 GYLLFGPPGTGKSSL---IAAMANYLKFNIYDMELTSVY 281
G LL+GPPGTGKS L +A AN F++ +L S +
Sbjct: 71 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW 109
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 241 KVWKRGYLLFGPPGTGKSSLIAAMANYL 268
K+ R LL GPPGTGK++L A+A L
Sbjct: 60 KMAGRAVLLAGPPGTGKTALALAIAQEL 87
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 245 RGYLLFGPPGTGKS---SLIAAMANYLKFNIYDMELTSVY 281
+G LLFGPPGTGK+ IA+ + F+I LTS +
Sbjct: 118 KGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKW 157
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 241 KVWKRGYLLFGPPGTGKSSLIAAMANYL 268
K R LL GPPGTGK++L A+A L
Sbjct: 74 KXAGRAVLLAGPPGTGKTALALAIAQEL 101
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 229 FVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMAN 266
F+K + + +G +G LL GPPG GK+ L A+A
Sbjct: 34 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 71
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 213 AMDPSMKQASIDDLDRFVKRRNF-----YRRVGKVWKRGYLLFGPPGTGKSSLIAAMANY 267
A++P +QAS + + RR R GK+ R L+ G PGTGK+++ MA
Sbjct: 36 ALEP--RQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA 93
Query: 268 L 268
L
Sbjct: 94 L 94
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 229 FVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMAN 266
F+K + + +G +G LL GPPG GK+ L A+A
Sbjct: 58 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 95
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 229 FVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMAN 266
F+K + + +G +G LL GPPG GK+ L A+A
Sbjct: 49 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 86
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 235 FYRRVGKVWKRGYLLFGPPGTGKSSLIAAMAN 266
Y +G +G +L+G PGTGK+ L A+AN
Sbjct: 207 LYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN 238
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Query: 226 LDRFVKRRNFYRRVGKVWK----RG-----YLLFGPPGTGKSSLIAAMANYLKFNIY 273
LD F+ + N +++ + RG LL GPPG GK++L +A+ L+ NI+
Sbjct: 24 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH 80
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 229 FVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMAN 266
F+K + + +G +G LL GPPG GK+ L A+A
Sbjct: 58 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 95
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Query: 226 LDRFVKRRNFYRRVGKVWK----RG-----YLLFGPPGTGKSSLIAAMANYLKFNIY 273
LD F+ + N +++ + RG LL GPPG GK++L +A+ L+ NI+
Sbjct: 24 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH 80
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Query: 226 LDRFVKRRNFYRRVGKVWK----RG-----YLLFGPPGTGKSSLIAAMANYLKFNIY 273
LD F+ + N +++ + RG LL GPPG GK++L +A+ L+ NI+
Sbjct: 24 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH 80
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Query: 226 LDRFVKRRNFYRRVGKVWK----RG-----YLLFGPPGTGKSSLIAAMANYLKFNIY 273
LD F+ + N +++ + RG LL GPPG GK++L +A+ L+ NI+
Sbjct: 24 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH 80
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 215 DPSMKQASIDDL---DRFVKRRNFYRRVGKVWKRGY---LLFGPPGTGKSSLIAAMANYL 268
D +++ ++D+ +R ++ Y K K LLFGPPG GK++L +A+ L
Sbjct: 3 DLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62
Query: 269 KFNI 272
N+
Sbjct: 63 GVNL 66
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Query: 226 LDRFVKRRNFYRRVGKVWK----RG-----YLLFGPPGTGKSSLIAAMANYLKFNIY 273
LD F+ + N +++ + RG LL GPPG GK++L +A+ L+ NI+
Sbjct: 24 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH 80
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 245 RGYLLFGPPGTGKSSLIAAMAN 266
+G LL+GPPGTGK+ A+AN
Sbjct: 244 KGILLYGPPGTGKTLCARAVAN 265
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 215 DPSMKQASIDDL---DRFVKRRNFYRRVGKVWKRGY---LLFGPPGTGKSSLIAAMANYL 268
D +++ ++D+ +R ++ Y K K LLFGPPG GK++L +A+ L
Sbjct: 3 DLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62
Query: 269 KFNI 272
N+
Sbjct: 63 GVNL 66
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 15/18 (83%)
Query: 248 LLFGPPGTGKSSLIAAMA 265
L +GPPGTGK+S I A+A
Sbjct: 50 LFYGPPGTGKTSTIVALA 67
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 215 DPSMKQASIDDL---DRFVKRRNFYRRVGKVWKRGY---LLFGPPGTGKSSLIAAMANYL 268
D +++ ++D+ +R ++ Y K K LLFGPPG GK++L +A+ L
Sbjct: 3 DLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62
Query: 269 KFNI 272
N+
Sbjct: 63 GVNL 66
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 243 WKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYCNSE 285
KR LL G PGTGKS L AMA L +E V+ N E
Sbjct: 59 QKRHVLLIGEPGTGKSMLGQAMAELLPTET--LEDILVFPNPE 99
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 249 LFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYCNSELR 287
L GPPG GK+SL ++A L + L V SE+R
Sbjct: 113 LAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIR 151
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Query: 226 LDRFVKRRNFYRRVGKVWK----RG-----YLLFGPPGTGKSSLIAAMANYLKFNIY 273
LD F+ + N +++ + RG LL GPPG G+++L +A+ L+ NI+
Sbjct: 24 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGRTTLAHIIASELQTNIH 80
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 190 GDSDRGGAWGSTNLD-HPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKR--- 245
G ++ G + TN + + T D +A D + A D LD + R +RV +V R
Sbjct: 143 GSNETGSSAAGTNSNANTPTLDSLARDLTAI-AKEDSLDPVIGRSKEIQRVIEVLSRRTK 201
Query: 246 -GYLLFGPPGTGKSSLIAAMANYLKFN 271
+L G PG GK+++ +A + N
Sbjct: 202 NNPVLIGEPGVGKTAIAEGLAQQIINN 228
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 190 GDSDRGGAWGSTNLD-HPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKR--- 245
G ++ G + TN + + T D +A D + A D LD + R +RV +V R
Sbjct: 143 GSNETGSSAAGTNSNANTPTLDSLARDLTAI-AKEDSLDPVIGRSKEIQRVIEVLSRRTK 201
Query: 246 -GYLLFGPPGTGKSSLIAAMANYLKFN 271
+L G PG GK+++ +A + N
Sbjct: 202 NNPVLIGEPGVGKTAIAEGLAQQIINN 228
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 229 FVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMAN 266
++K + ++G +G LL GPPG GK+ L A+A
Sbjct: 24 YLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 232 RRNFYRRVGKVWK---RGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSV 280
++N ++ GK R +L+GPPG GK++ +A L ++I + + V
Sbjct: 62 KKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDV 113
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 213 AMDPSMKQASIDDLDRFVKRRNF-----YRRVGKVWKRGYLLFGPPGTGKSSLIAAMANY 267
A++P +QAS + + RR R GK+ R L+ G PGTGK+++ A
Sbjct: 51 ALEP--RQASQGXVGQLAARRAAGVVLEXIREGKIAGRAVLIAGQPGTGKTAIAXGXAQA 108
Query: 268 L 268
L
Sbjct: 109 L 109
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 14/78 (17%)
Query: 211 KIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRG---YLLF-GPPGTGKSSLIAAMA- 265
K+ P +++ LD V + + +R+ K G +LLF GPPG GK++ A+A
Sbjct: 9 KVLEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAR 68
Query: 266 ---------NYLKFNIYD 274
N+L+ N D
Sbjct: 69 ELFGENWRHNFLELNASD 86
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 248 LLFGPPGTGKSSLIAAMANYLKFNI 272
+L+GPPGTGK++L +A Y ++
Sbjct: 54 ILWGPPGTGKTTLAEVIARYANADV 78
>pdb|3VI3|B Chain B, Crystal Structure Of Alpha5beta1 Integrin Headpiece
(Ligand-Free Form)
pdb|3VI3|D Chain D, Crystal Structure Of Alpha5beta1 Integrin Headpiece
(Ligand-Free Form)
pdb|3VI4|B Chain B, Crystal Structure Of Alpha5beta1 Integrin Headpiece In
Complex With Rgd Peptide
pdb|3VI4|D Chain D, Crystal Structure Of Alpha5beta1 Integrin Headpiece In
Complex With Rgd Peptide
Length = 454
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 7 VLSTYTAFAASAMLVRTVI-NEVQTLTS-----QIIPKQLQTMML-SKLGGLFTNHSSQM 59
+S Y + + A LV+ + N +QT+ + Q + K+L+ ++ S +G L N S+ +
Sbjct: 289 TMSHYYDYPSIAHLVQKLSENNIQTIFAVTEEFQPVYKELKNLIPKSAVGTLSANSSNVI 348
Query: 60 TLIIDEYNGFSINQLYEASEL 80
LIID YN S + E +L
Sbjct: 349 QLIIDAYNSLSSEVILENGKL 369
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 248 LLFGPPGTGKSSLIAAMANYL 268
L +GPPGTGK+S I A+ L
Sbjct: 62 LFYGPPGTGKTSTILALTKEL 82
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 244 KRGYLLFGPPGTGKSSLIAAMANYLKFNIYD 274
KR L GP G GKS++ +A L YD
Sbjct: 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34
>pdb|4B3F|X Chain X, Crystal Structure Of 1ghmbp2 Helicase
Length = 646
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 15/57 (26%)
Query: 205 HPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLI 261
HP TF +D S K+A + L + K ++ GPPGTGK++ +
Sbjct: 181 HPLTFFNTCLDTSQKEAVLFALSQ---------------KELAIIHGPPGTGKTTTV 222
>pdb|4B3G|A Chain A, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
pdb|4B3G|B Chain B, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
Length = 646
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 15/57 (26%)
Query: 205 HPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLI 261
HP TF +D S K+A + L + K ++ GPPGTGK++ +
Sbjct: 181 HPLTFFNTCLDTSQKEAVLFALSQ---------------KELAIIHGPPGTGKTTTV 222
>pdb|2QGZ|A Chain A, Crystal Structure Of A Putative Primosome Component From
Streptococcus Pyogenes Serotype M3. Northeast Structural
Genomics Target Dr58
Length = 308
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 234 NFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL 268
+F + ++G L+G G GKS L+AAMA+ L
Sbjct: 142 DFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 9/64 (14%)
Query: 213 AMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK-FN 271
M P + +ID + + FY + KRG +L GPPG+GK+ + M N L+ +
Sbjct: 1022 VMRPDIVIPTIDTIKH---EKIFYDLLNS--KRGIILCGPPGSGKTMI---MNNALRNSS 1073
Query: 272 IYDM 275
+YD+
Sbjct: 1074 LYDV 1077
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 213 AMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLI 261
M P + +ID + + FY + KRG +L GPPG+GK+ ++
Sbjct: 1241 VMRPDIVIPTIDTIKH---EKIFYDLLNS--KRGIILCGPPGSGKTMIM 1284
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 15/65 (23%)
Query: 205 HPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLF-GPPGTGKSSLIAA 263
P T D++ + I L +V+R+N +LLF GPPGTGK++ A
Sbjct: 12 RPRTLDEVVGQDEV----IQRLKGYVERKNI----------PHLLFSGPPGTGKTATAIA 57
Query: 264 MANYL 268
+A L
Sbjct: 58 LARDL 62
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 15/65 (23%)
Query: 205 HPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLF-GPPGTGKSSLIAA 263
P T D++ + I L +V+R+N +LLF GPPGTGK++ A
Sbjct: 12 RPRTLDEVVGQDEV----IQRLKGYVERKNI----------PHLLFSGPPGTGKTATAIA 57
Query: 264 MANYL 268
+A L
Sbjct: 58 LARDL 62
>pdb|2EWV|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Adp
Length = 372
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 5/33 (15%)
Query: 236 YRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL 268
+R++G + L+ GP G+GKS+ IA+M +Y+
Sbjct: 133 HRKMGLI-----LVTGPTGSGKSTTIASMIDYI 160
>pdb|1ZU4|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group P21212
pdb|1ZU5|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
pdb|1ZU5|B Chain B, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
Length = 320
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 247 YLLFGPPGTGKSSLIAAMANY 267
++L G GTGK++ +A MANY
Sbjct: 108 FMLVGVNGTGKTTSLAKMANY 128
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 248 LLFGPPGTGKSSLIAAMANYLK 269
L+ GP G+GKS+LI + +LK
Sbjct: 37 LIIGPNGSGKSTLINVITGFLK 58
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 248 LLFGPPGTGKSSLIAAMANYLK 269
L+ GP G+GKS+LI + +LK
Sbjct: 37 LIIGPNGSGKSTLINVITGFLK 58
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 248 LLFGPPGTGKSSLIAAMANYLK 269
L+ GP G+GKS+LI + +LK
Sbjct: 37 LIIGPNGSGKSTLINVITGFLK 58
>pdb|1X3L|A Chain A, Crystal Structure Of The Ph0495 Protein From Pyrococccus
Horikoshii Ot3
Length = 440
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 225 DLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAM 264
D+++ +K N Y + KV G L GP GT +S++ A+
Sbjct: 395 DVEKVLKEHNSYEALKKVG--GLLFTGPTGTNVNSIVIAI 432
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,809,944
Number of Sequences: 62578
Number of extensions: 303661
Number of successful extensions: 1085
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1010
Number of HSP's gapped (non-prelim): 89
length of query: 288
length of database: 14,973,337
effective HSP length: 98
effective length of query: 190
effective length of database: 8,840,693
effective search space: 1679731670
effective search space used: 1679731670
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)