BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045456
(288 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P32839|BCS1_YEAST Mitochondrial chaperone BCS1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BCS1 PE=1 SV=2
Length = 456
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 44/67 (65%)
Query: 212 IAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFN 271
+ +D +K+ +DD+ F+K +Y G ++RGYLL+GPPG+GK+S I A+A L +N
Sbjct: 228 VILDSGIKEGILDDVYDFMKNGKWYSDRGIPYRRGYLLYGPPGSGKTSFIQALAGELDYN 287
Query: 272 IYDMELT 278
I + L+
Sbjct: 288 ICILNLS 294
>sp|Q54DY9|BCS1B_DICDI Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum
GN=bcsl1b PE=3 SV=1
Length = 458
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 212 IAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFN 271
+ +D + I D+ +F+ ++Y G ++RGYLL+GPPGTGKSS I A+A L+ +
Sbjct: 209 VILDKGKSELIIQDVKKFLNNSDWYNDRGIPYRRGYLLYGPPGTGKSSFITALAGELQLS 268
Query: 272 IYDMEL 277
I + L
Sbjct: 269 ICILNL 274
>sp|Q54HY8|BCS1A_DICDI Probable mitochondrial chaperone BCS1-A OS=Dictyostelium discoideum
GN=bcs1la PE=3 SV=1
Length = 421
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 208 TFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANY 267
+ + + +K I+D+ F+ ++YR G ++RGYLL+G PG GKSSLI A+A
Sbjct: 185 SLSSVILADDLKSKLIEDIKSFITNESWYRNRGIPYRRGYLLYGEPGNGKSSLINAIAGE 244
Query: 268 LKFNIYDMELTS 279
L +I + L+S
Sbjct: 245 LNLDICIVSLSS 256
>sp|Q7ZV60|BCS1_DANRE Mitochondrial chaperone BCS1 OS=Danio rerio GN=bcs1l PE=2 SV=2
Length = 420
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 212 IAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFN 271
+ ++ + + +DD+ F+ +Y G ++RGYLL+GPPG GKSS I A+A L ++
Sbjct: 191 VVLESGVAERIVDDVKEFIGNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGELGYS 250
Query: 272 IYDMELT 278
I M L+
Sbjct: 251 ICLMSLS 257
>sp|Q9P6Q3|BCS1_SCHPO Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1
Length = 449
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 197 AWGS--TNLDHPAT---FDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFG 251
AW + HP + + ++ ++K+ DD+ F++ +Y G ++RGYLL+G
Sbjct: 190 AWATEWKPFGHPRSKRMLSSVVLESNVKKMITDDVHDFLRNSQWYDTRGIPYRRGYLLYG 249
Query: 252 PPGTGKSSLIAAMANYLKFNIYDMEL 277
PPG+GK+S + A+A L ++I + L
Sbjct: 250 PPGSGKTSFLYALAGELDYDICVLNL 275
>sp|Q7ZTL7|BCS1_XENLA Mitochondrial chaperone BCS1 OS=Xenopus laevis GN=bcs1l PE=2 SV=1
Length = 419
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 39/61 (63%)
Query: 212 IAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFN 271
+ ++ + + + D+ F++ +Y G ++RGYLL+GPPG GKSS I A+A L+++
Sbjct: 191 VVLEQGISEKIVQDVKGFIENPKWYSDRGIPYRRGYLLYGPPGCGKSSFITALAGELEYS 250
Query: 272 I 272
I
Sbjct: 251 I 251
>sp|Q9CZP5|BCS1_MOUSE Mitochondrial chaperone BCS1 OS=Mus musculus GN=Bcs1l PE=1 SV=1
Length = 418
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 11/110 (10%)
Query: 166 VMEKSNAI---KEQNKVVKLYAVGHFGGDSDRGGAWGSTNLDHPATFDKIAMDPSMKQAS 222
++E++ A+ +E+ K V AVG +G P D + + +
Sbjct: 150 ILEEARALALQQEEGKTVMYTAVG------SEWRTFGYPRRRRP--LDSVVLQQGLADRI 201
Query: 223 IDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNI 272
+ D+ F+ +Y G ++RGYLL+GPPG GKSS I A+A L+ +I
Sbjct: 202 VKDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGELEHSI 251
>sp|Q2SF13|FTSH_HAHCH ATP-dependent zinc metalloprotease FtsH OS=Hahella chejuensis
(strain KCTC 2396) GN=ftsH PE=3 SV=1
Length = 619
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 208 TFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANY 267
TFD++A + K+ + +L +++ + + RVG + RG LL GPPGTGK+ L A+A
Sbjct: 174 TFDEVAGQTNAKR-EVQELVEYLRDPDRFHRVGALAPRGVLLMGPPGTGKTLLARALAGE 232
Query: 268 LKFNIYDM 275
N Y M
Sbjct: 233 AGVNFYPM 240
>sp|Q5E9H5|BCS1_BOVIN Mitochondrial chaperone BCS1 OS=Bos taurus GN=BCS1L PE=2 SV=1
Length = 419
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 209 FDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL 268
+ + ++ + + + D+ F+ +Y G ++RGYLL+GPPG GKSS I A+A L
Sbjct: 188 LNSVVLEQGVTERIVRDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 247
Query: 269 KFNI 272
+ +I
Sbjct: 248 QHSI 251
>sp|Q9Y276|BCS1_HUMAN Mitochondrial chaperone BCS1 OS=Homo sapiens GN=BCS1L PE=1 SV=1
Length = 419
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 209 FDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL 268
+ + + + + D+ F+ +Y G ++RGYLL+GPPG GKSS I A+A L
Sbjct: 188 LNSVVLQQGLADRIVRDVQEFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 247
Query: 269 KFNI 272
+ +I
Sbjct: 248 EHSI 251
>sp|D1C2C6|FTSH2_SPHTD ATP-dependent zinc metalloprotease FtsH 2 OS=Sphaerobacter
thermophilus (strain DSM 20745 / S 6022) GN=ftsH2 PE=3
SV=1
Length = 652
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 208 TFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANY 267
TFD +A +K+ D +D +++ +RR+G RG LL GPPGTGK+ L A+A
Sbjct: 158 TFDDVAGAEEVKEEVADIVD-YLRDPERFRRLGARIPRGVLLTGPPGTGKTLLTRALAGE 216
Query: 268 LK---FNIYDMELTSVYCN 283
+ F++ E +Y
Sbjct: 217 ARASFFSVSGSEFVELYVG 235
>sp|A1TZE0|FTSH_MARAV ATP-dependent zinc metalloprotease FtsH OS=Marinobacter aquaeolei
(strain ATCC 700491 / DSM 11845 / VT8) GN=ftsH PE=3 SV=1
Length = 633
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 208 TFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANY 267
T D +A S K+ I ++ F+K + YRR+G V +G LL GPPGTGK+ L A+A
Sbjct: 184 TLDDVAGIESAKR-DISEIIDFLKSPDKYRRLGAVMPKGVLLVGPPGTGKTLLARAIAGE 242
Query: 268 LKFNIYDM 275
+ + +
Sbjct: 243 AEVPFFSI 250
>sp|Q5UPR4|YR776_MIMIV Uncharacterized protein R776 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R776 PE=4 SV=1
Length = 314
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 198 WGSTNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGK 257
W + P F + M+ + D+D F++ + YR +G ++RG LL+G G GK
Sbjct: 156 WSYPIIRRPCKFLDSNLTTEMRSV-LKDVDVFMRNEDTYRELGANYRRGMLLYGESGCGK 214
Query: 258 SSLIAAMANYLKFNIYDMELTS 279
+ LI+ ++N + Y + L S
Sbjct: 215 TGLISIISNKYGMDSYILNLNS 236
>sp|D1CDT8|FTSH_THET1 ATP-dependent zinc metalloprotease FtsH OS=Thermobaculum terrenum
(strain ATCC BAA-798 / YNP1) GN=ftsH PE=3 SV=1
Length = 646
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 186 GHFGGDSDRGGAWGSTNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKR 245
G FG R + +T TFD +A KQ + +D F+K Y+R+G +
Sbjct: 174 GLFGLGKSRAKRYNATESTR-VTFDDVAGIEEAKQELAEIVD-FLKNPQKYQRLGGTIPK 231
Query: 246 GYLLFGPPGTGKSSLIAAMANYLKFNIYDM 275
G LL GPPGTGK+ L A+A + M
Sbjct: 232 GVLLIGPPGTGKTLLARAVAGEAGVPFFSM 261
>sp|O34703|YJOB_BACSU Uncharacterized ATPase YjoB OS=Bacillus subtilis (strain 168)
GN=yjoB PE=1 SV=1
Length = 423
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 211 KIAMDPSMKQASIDDLDRFVKR-RNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMAN 266
++ M+P +K+ +D+F ++FY+ +KRG LL+GPPG GK++L+ ++A
Sbjct: 186 QVIMNPLLKKEIYRSIDQFFHSDKSFYQTYDIPYKRGILLYGPPGNGKTTLVKSIAG 242
>sp|Q8SQI9|PRS6B_ENCCU 26S protease regulatory subunit 6B homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU08_1970 PE=1 SV=1
Length = 387
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 234 NFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK 269
+ YR++G +G LL+GPPGTGK+ L+ A+AN+ K
Sbjct: 158 DLYRQIGIDPPQGVLLYGPPGTGKTMLVKAVANHTK 193
>sp|O74894|PRS6B_SCHPO 26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpt3 PE=3 SV=1
Length = 389
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 234 NFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFN 271
+ YR++G RG LL+GPPGTGK+ L+ A+AN N
Sbjct: 158 DLYRQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTAAN 195
>sp|P78578|PRS6B_ASPNG 26S protease regulatory subunit 6B homolog OS=Aspergillus niger
GN=tbpA PE=3 SV=1
Length = 423
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 234 NFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMAN 266
+ Y+++G RG LL+GPPGTGK+ L+ A+AN
Sbjct: 190 DLYKQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 222
>sp|P33298|PRS6B_YEAST 26S protease regulatory subunit 6B homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPT3 PE=1
SV=2
Length = 428
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 234 NFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK 269
+ Y ++G RG LL+GPPGTGK+ L+ A+AN K
Sbjct: 196 DLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK 231
>sp|Q9ZPR1|CD48B_ARATH Cell division control protein 48 homolog B OS=Arabidopsis thaliana
GN=CDC48B PE=2 SV=1
Length = 603
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 237 RRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVY 281
R +G W RG LL+GPPGTGK+SL+ A+ ++ + SV+
Sbjct: 49 RTLGLKWPRGLLLYGPPGTGKTSLVRAVVQECDAHLIVLSPHSVH 93
>sp|A9GRC9|FTSH1_SORC5 ATP-dependent zinc metalloprotease FtsH 1 OS=Sorangium cellulosum
(strain So ce56) GN=ftsH1 PE=3 SV=1
Length = 619
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 206 PATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSL---IA 262
P F +A K ++ +D F+K + YR +G RG LL GPPGTGK+ L +A
Sbjct: 159 PVRFSDVAGVDEAKDELVEVVD-FLKEPSRYRSLGGRIPRGLLLIGPPGTGKTLLARAVA 217
Query: 263 AMANYLKFNIYDMELTSVYCN 283
AN F++ E ++
Sbjct: 218 GEANVPFFSLNASEFVEMFVG 238
>sp|O17071|PRS10_CAEEL Probable 26S protease regulatory subunit 10B OS=Caenorhabditis
elegans GN=rpt-4 PE=1 SV=2
Length = 406
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 235 FYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFN 271
++RVG +G LLFGPPGTGK+ L A+A+ L N
Sbjct: 175 LFKRVGITPPKGCLLFGPPGTGKTLLARAVASQLDCN 211
>sp|P34123|PRS6B_DICDI 26S protease regulatory subunit 6B homolog OS=Dictyostelium
discoideum GN=psmC4 PE=1 SV=1
Length = 403
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 234 NFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANY 267
N Y+++G RG LL+GPPGTGK+ L A+A++
Sbjct: 174 NLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH 207
>sp|Q0IIR9|KTNA1_XENTR Katanin p60 ATPase-containing subunit A1 OS=Xenopus tropicalis
GN=katna1 PE=2 SV=1
Length = 492
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 15/86 (17%)
Query: 210 DKIAMDPSMKQASIDDLDRFVK-----------RRNFYRRVGKVWKRGYLLFGPPGTGKS 258
D I+ +P+++ I DL+ K F++ + + WK G L+ GPPGTGK+
Sbjct: 199 DIISQNPNIRWDDIADLEEAKKLLKEAVVLPMWMPEFFKGIRRPWK-GVLMVGPPGTGKT 257
Query: 259 SLIAAMANYLK---FNIYDMELTSVY 281
L A+A K FNI LTS Y
Sbjct: 258 LLAKAVATECKTTFFNISSSTLTSKY 283
>sp|Q9PUL2|KTNA1_XENLA Katanin p60 ATPase-containing subunit A1 (Fragment) OS=Xenopus
laevis GN=katna1 PE=2 SV=1
Length = 486
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 15/86 (17%)
Query: 210 DKIAMDPSMKQASIDDLDRFVK-----------RRNFYRRVGKVWKRGYLLFGPPGTGKS 258
D I+ +P+++ I DL+ K F++ + + WK G L+ GPPGTGK+
Sbjct: 195 DIISQNPNIRWDDIADLEEAKKLLKEAVVLPMWMPEFFKGIRRPWK-GVLMVGPPGTGKT 253
Query: 259 SLIAAMANYLK---FNIYDMELTSVY 281
L A+A K FNI LTS Y
Sbjct: 254 LLAKAVATECKTTFFNISSSTLTSKY 279
>sp|A8ZNZ4|FTSH_ACAM1 ATP-dependent zinc metalloprotease FtsH OS=Acaryochloris marina
(strain MBIC 11017) GN=ftsH PE=3 SV=1
Length = 655
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 199 GSTNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKS 258
GST + TFD +A K ++ +D F+ + Y R+G +G LL GPPGTGK+
Sbjct: 169 GSTGV----TFDDVAGVEEAKTELLEIVD-FLAHADKYTRLGAKIPKGVLLVGPPGTGKT 223
Query: 259 SLIAAMANYLK---FNIYDMELTSVYCN 283
L A+A K F+I E ++
Sbjct: 224 LLAKAIAGEAKVPFFSISGSEFIELFVG 251
>sp|P85200|PRS6B_HELAN 26S protease regulatory subunit 6B homolog OS=Helianthus annuus
PE=1 SV=1
Length = 414
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 235 FYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANY 267
Y+++G RG LL+GPPGTGK+ L A+AN+
Sbjct: 186 LYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 218
>sp|Q5RII9|KTNA1_DANRE Katanin p60 ATPase-containing subunit A1 OS=Danio rerio GN=katna1
PE=2 SV=1
Length = 485
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 17/103 (16%)
Query: 193 DRGGAWGSTNLDHPATFDKIAMDPSMKQASIDDLDRFVK-----------RRNFYRRVGK 241
DRGG +L D I+ +P++ I DL+ K F++ + +
Sbjct: 178 DRGGE--DKDLIDALERDIISQNPNVTWDDIADLEEAKKLLKEAVVLPMWMPEFFKGIRR 235
Query: 242 VWKRGYLLFGPPGTGKSSLIAAMANYLK---FNIYDMELTSVY 281
WK G L+ GPPGTGK+ L A+A + FN+ LTS Y
Sbjct: 236 PWK-GVLMVGPPGTGKTLLAKAVATECRTTFFNVSSSTLTSKY 277
>sp|B5X3X5|KTNA1_SALSA Katanin p60 ATPase-containing subunit A1 OS=Salmo salar GN=katna1
PE=2 SV=1
Length = 486
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 15/86 (17%)
Query: 210 DKIAMDPSMKQASIDDLDRFVK-----------RRNFYRRVGKVWKRGYLLFGPPGTGKS 258
D I+ +P++K I DL+ K F++ + + WK G L+ GPPGTGK+
Sbjct: 193 DIISQNPNVKWDDIADLEEAKKLLKEAVVLPMWMPEFFKGIRRPWK-GVLMVGPPGTGKT 251
Query: 259 SLIAAMANYLK---FNIYDMELTSVY 281
L A+A + FN+ LTS Y
Sbjct: 252 LLAKAVATECRTTFFNVSSSTLTSKY 277
>sp|Q9SEI4|PRS6B_ARATH 26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana
GN=RPT3 PE=1 SV=1
Length = 408
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 235 FYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANY 267
Y+++G RG LL+GPPGTGK+ L A+AN+
Sbjct: 180 LYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212
>sp|C8W731|FTSH_ATOPD ATP-dependent zinc metalloprotease FtsH OS=Atopobium parvulum
(strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546)
GN=ftsH PE=3 SV=1
Length = 644
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 204 DHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAA 263
D TF +A K+ S+ ++ F+K + Y+ +G RG LL GPPGTGK+ + A
Sbjct: 178 DTGITFKDVAGQEEAKE-SMQEIVSFLKTPDKYKEIGARCPRGALLVGPPGTGKTLIAKA 236
Query: 264 MA 265
+A
Sbjct: 237 VA 238
>sp|P62335|PRS10_SPETR 26S protease regulatory subunit 10B OS=Spermophilus
tridecemlineatus GN=PSMC6 PE=2 SV=1
Length = 389
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 235 FYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFN 271
++RVG + +G LL+GPPGTGK+ L A+A+ L N
Sbjct: 158 LFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCN 194
>sp|P62334|PRS10_MOUSE 26S protease regulatory subunit 10B OS=Mus musculus GN=Psmc6 PE=1
SV=1
Length = 389
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 235 FYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFN 271
++RVG + +G LL+GPPGTGK+ L A+A+ L N
Sbjct: 158 LFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCN 194
>sp|P62333|PRS10_HUMAN 26S protease regulatory subunit 10B OS=Homo sapiens GN=PSMC6 PE=1
SV=1
Length = 389
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 235 FYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFN 271
++RVG + +G LL+GPPGTGK+ L A+A+ L N
Sbjct: 158 LFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCN 194
>sp|Q2KIW6|PRS10_BOVIN 26S protease regulatory subunit 10B OS=Bos taurus GN=PSMC6 PE=2
SV=1
Length = 389
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 235 FYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFN 271
++RVG + +G LL+GPPGTGK+ L A+A+ L N
Sbjct: 158 LFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCN 194
>sp|B3R0R7|FTSH3_PHYMT ATP-dependent zinc metalloprotease FtsH 3 OS=Phytoplasma mali
(strain AT) GN=ftsH3 PE=3 SV=1
Length = 599
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 208 TFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMA 265
TF +A + K+ + +D F+K+ Y +G RG LL GPPGTGK+ L A+A
Sbjct: 172 TFKDVAGNTEEKEEMTELID-FLKQPQKYETIGAAIPRGVLLEGPPGTGKTLLAKALA 228
>sp|Q67T82|FTSH2_SYMTH ATP-dependent zinc metalloprotease FtsH 2 OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=ftsH2 PE=3 SV=1
Length = 587
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 204 DHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAA 263
+ P TF +A +K ++++ ++K + YR +G +G LL+GPPGTGK+ L A
Sbjct: 146 ESPVTFADVAGMDEVK-GELEEIVDYLKNPDKYRAIGARIPKGVLLYGPPGTGKTLLARA 204
Query: 264 MAN 266
+A
Sbjct: 205 VAG 207
>sp|A1URA3|FTSH_BARBK ATP-dependent zinc metalloprotease FtsH OS=Bartonella bacilliformis
(strain ATCC 35685 / KC583) GN=ftsH PE=3 SV=1
Length = 764
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 208 TFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSL---IAAM 264
TF +A KQ + ++ F++ ++R+G RG LL GPPGTGK+ L IA
Sbjct: 154 TFKDVAGVEEAKQ-DLQEIVDFLREPQKFQRLGGRIPRGVLLVGPPGTGKTLLARSIAGE 212
Query: 265 ANYLKFNIYDMELTSVYC 282
AN F I + ++
Sbjct: 213 ANVPFFTISGSDFVEMFV 230
>sp|O14325|YB7A_SCHPO Uncharacterized AAA domain-containing protein C16E9.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC16E9.10c PE=1 SV=1
Length = 779
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 230 VKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFN 271
+KR Y+ VG G LL+GPPG GK+ L A+AN K N
Sbjct: 512 IKRPELYQSVGISAPTGVLLWGPPGCGKTLLAKAVANESKAN 553
Score = 38.5 bits (88), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 22/39 (56%)
Query: 230 VKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL 268
+K Y+ G RG LL GPPG GK+ L A+AN L
Sbjct: 194 IKHPEVYQYTGIHPPRGVLLHGPPGCGKTMLANALANEL 232
>sp|A0LR74|FTSH_ACIC1 ATP-dependent zinc metalloprotease FtsH OS=Acidothermus
cellulolyticus (strain ATCC 43068 / 11B) GN=ftsH PE=3
SV=1
Length = 666
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 220 QASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMAN 266
+A I ++ F++ YRR G RG L+ GPPGTGK+ + A+A
Sbjct: 188 KAEIAEVVDFLRSPERYRRAGAAIPRGVLMVGPPGTGKTLMARAVAG 234
>sp|Q9HGM3|YTA12_SCHPO Mitochondrial respiratory chain complexes assembly protein rca1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=yta12 PE=3 SV=1
Length = 773
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 228 RFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMA 265
+F+K FY R+G RG +L GPPGTGK+ L A A
Sbjct: 313 KFLKNPKFYERLGAKIPRGAILSGPPGTGKTLLAKATA 350
>sp|Q9QYY8|SPAST_MOUSE Spastin OS=Mus musculus GN=Spast PE=2 SV=3
Length = 614
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 245 RGYLLFGPPGTGKSSL---IAAMANYLKFNIYDMELTSVY 281
RG LLFGPPG GK+ L +AA +N FNI LTS Y
Sbjct: 374 RGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKY 413
>sp|Q5ZK92|SPAST_CHICK Spastin OS=Gallus gallus GN=SPAST PE=2 SV=1
Length = 613
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 245 RGYLLFGPPGTGKSSL---IAAMANYLKFNIYDMELTSVY 281
RG LLFGPPG GK+ L +AA +N FNI LTS Y
Sbjct: 373 RGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKY 412
>sp|Q6E0V2|KTNA1_RAT Katanin p60 ATPase-containing subunit A1 OS=Rattus norvegicus
GN=Katna1 PE=1 SV=1
Length = 491
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 235 FYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK---FNIYDMELTSVY 281
F++ + + WK G L+ GPPGTGK+ L A+A K FN+ LTS Y
Sbjct: 234 FFKGIRRPWK-GVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKY 282
>sp|Q1HGK7|KTNA1_CHICK Katanin p60 ATPase-containing subunit A1 OS=Gallus gallus GN=KATNA1
PE=2 SV=1
Length = 492
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 235 FYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK---FNIYDMELTSVY 281
F++ + + WK G L+ GPPGTGK+ L A+A K FN+ LTS Y
Sbjct: 235 FFKGIRRPWK-GVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKY 283
>sp|A2VDN5|SPAST_BOVIN Spastin OS=Bos taurus GN=SPAST PE=2 SV=1
Length = 614
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 245 RGYLLFGPPGTGKSSL---IAAMANYLKFNIYDMELTSVY 281
RG LLFGPPG GK+ L +AA +N FNI LTS Y
Sbjct: 374 RGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKY 413
>sp|Q9WV86|KTNA1_MOUSE Katanin p60 ATPase-containing subunit A1 OS=Mus musculus GN=Katna1
PE=1 SV=1
Length = 491
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 235 FYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK---FNIYDMELTSVY 281
F++ + + WK G L+ GPPGTGK+ L A+A K FN+ LTS Y
Sbjct: 234 FFKGIRRPWK-GVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKY 282
>sp|O75449|KTNA1_HUMAN Katanin p60 ATPase-containing subunit A1 OS=Homo sapiens GN=KATNA1
PE=1 SV=1
Length = 491
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 235 FYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK---FNIYDMELTSVY 281
F++ + + WK G L+ GPPGTGK+ L A+A K FN+ LTS Y
Sbjct: 234 FFKGIRRPWK-GVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKY 282
>sp|Q4R407|KTNA1_MACFA Katanin p60 ATPase-containing subunit A1 OS=Macaca fascicularis
GN=KATNA1 PE=2 SV=1
Length = 491
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 235 FYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK---FNIYDMELTSVY 281
F++ + + WK G L+ GPPGTGK+ L A+A K FN+ LTS Y
Sbjct: 234 FFKGIRRPWK-GVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKY 282
>sp|Q6AZT2|SPAST_XENLA Spastin OS=Xenopus laevis GN=spast PE=2 SV=1
Length = 600
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 245 RGYLLFGPPGTGKSSL---IAAMANYLKFNIYDMELTSVY 281
RG LLFGPPG GK+ L +AA +N FNI LTS Y
Sbjct: 360 RGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKY 399
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,377,562
Number of Sequences: 539616
Number of extensions: 3838667
Number of successful extensions: 19940
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 93
Number of HSP's that attempted gapping in prelim test: 19213
Number of HSP's gapped (non-prelim): 818
length of query: 288
length of database: 191,569,459
effective HSP length: 116
effective length of query: 172
effective length of database: 128,974,003
effective search space: 22183528516
effective search space used: 22183528516
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)