Query 045456
Match_columns 288
No_of_seqs 339 out of 2144
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 13:26:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045456.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045456hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0743 AAA+-type ATPase [Post 100.0 6.7E-65 1.4E-69 477.0 21.3 276 13-288 2-279 (457)
2 PF14363 AAA_assoc: Domain ass 100.0 2.2E-30 4.7E-35 201.2 11.3 97 35-131 1-98 (98)
3 COG1222 RPT1 ATP-dependent 26S 99.8 5.5E-19 1.2E-23 162.8 5.6 82 201-282 142-223 (406)
4 KOG0730 AAA+-type ATPase [Post 99.7 5.9E-17 1.3E-21 158.8 6.0 81 203-283 427-507 (693)
5 KOG0727 26S proteasome regulat 99.6 2.9E-16 6.4E-21 139.2 5.6 77 205-281 150-226 (408)
6 KOG0733 Nuclear AAA ATPase (VC 99.6 5.7E-16 1.2E-20 150.7 6.4 76 207-283 187-262 (802)
7 KOG0733 Nuclear AAA ATPase (VC 99.6 5.3E-16 1.2E-20 150.8 5.4 84 200-283 501-584 (802)
8 KOG0731 AAA+-type ATPase conta 99.6 9.5E-16 2.1E-20 153.9 6.9 77 204-281 305-381 (774)
9 PTZ00454 26S protease regulato 99.5 9.6E-15 2.1E-19 139.8 7.0 78 204-281 139-216 (398)
10 KOG0726 26S proteasome regulat 99.5 3.4E-15 7.3E-20 134.7 2.3 82 200-281 175-256 (440)
11 KOG0736 Peroxisome assembly fa 99.5 6.8E-15 1.5E-19 146.2 4.4 79 203-282 665-743 (953)
12 KOG0728 26S proteasome regulat 99.5 1E-14 2.2E-19 129.4 4.4 82 201-282 138-219 (404)
13 KOG0738 AAA+-type ATPase [Post 99.5 2.4E-14 5.3E-19 133.3 6.7 77 206-283 208-284 (491)
14 PTZ00361 26 proteosome regulat 99.5 5.6E-14 1.2E-18 135.7 8.1 82 201-282 174-255 (438)
15 KOG0734 AAA+-type ATPase conta 99.5 3.3E-14 7.2E-19 136.7 6.4 74 207-281 301-374 (752)
16 PRK03992 proteasome-activating 99.5 6E-14 1.3E-18 134.1 7.5 80 203-282 124-203 (389)
17 KOG0729 26S proteasome regulat 99.5 5.1E-14 1.1E-18 125.9 5.3 82 201-282 168-249 (435)
18 TIGR03689 pup_AAA proteasome A 99.5 1E-13 2.2E-18 135.9 7.8 70 202-271 174-243 (512)
19 KOG0652 26S proteasome regulat 99.4 4.6E-14 9.9E-19 125.8 4.0 79 202-280 163-241 (424)
20 KOG0737 AAA+-type ATPase [Post 99.4 1.9E-13 4.1E-18 126.8 5.6 77 207-283 89-166 (386)
21 CHL00195 ycf46 Ycf46; Provisio 99.4 5.8E-13 1.3E-17 130.4 8.6 74 206-282 224-297 (489)
22 KOG0739 AAA+-type ATPase [Post 99.4 1.8E-13 3.8E-18 124.0 3.9 76 207-283 130-205 (439)
23 COG0464 SpoVK ATPases of the A 99.4 6.3E-13 1.4E-17 130.7 8.0 80 204-283 236-315 (494)
24 TIGR01242 26Sp45 26S proteasom 99.4 5.4E-13 1.2E-17 126.4 7.0 79 202-280 114-192 (364)
25 COG1223 Predicted ATPase (AAA+ 99.4 5.8E-13 1.3E-17 118.7 5.6 75 204-282 115-189 (368)
26 TIGR01243 CDC48 AAA family ATP 99.4 7.3E-13 1.6E-17 136.1 7.2 79 205-283 448-526 (733)
27 TIGR01241 FtsH_fam ATP-depende 99.4 8.9E-13 1.9E-17 129.8 6.9 77 204-281 49-125 (495)
28 PF05496 RuvB_N: Holliday junc 99.3 3.3E-12 7.1E-17 112.5 7.1 76 203-286 17-92 (233)
29 KOG0651 26S proteasome regulat 99.3 1.1E-12 2.4E-17 119.3 4.0 76 208-283 130-205 (388)
30 COG0465 HflB ATP-dependent Zn 99.3 2.1E-12 4.5E-17 127.7 5.8 76 205-281 145-220 (596)
31 TIGR01243 CDC48 AAA family ATP 99.3 3.9E-12 8.5E-17 130.7 7.6 79 205-283 173-251 (733)
32 KOG0735 AAA+-type ATPase [Post 99.3 3.2E-12 7E-17 126.5 4.4 77 207-283 664-740 (952)
33 CHL00176 ftsH cell division pr 99.2 1.3E-11 2.8E-16 124.5 7.3 77 204-281 177-253 (638)
34 PRK04195 replication factor C 99.2 4.7E-11 1E-15 117.2 6.7 78 197-285 3-80 (482)
35 KOG0740 AAA+-type ATPase [Post 99.1 1.1E-10 2.5E-15 111.3 4.2 79 204-283 147-225 (428)
36 PLN00020 ribulose bisphosphate 99.0 2.6E-10 5.7E-15 107.1 6.3 78 204-283 109-187 (413)
37 COG2255 RuvB Holliday junction 99.0 4.6E-10 9.9E-15 101.4 6.2 76 203-286 19-94 (332)
38 KOG0989 Replication factor C, 99.0 6.2E-10 1.3E-14 101.5 4.9 69 201-282 27-101 (346)
39 PRK14962 DNA polymerase III su 99.0 8.1E-10 1.8E-14 108.1 5.9 57 202-270 6-62 (472)
40 KOG0732 AAA+-type ATPase conta 98.9 8.6E-10 1.9E-14 114.3 5.5 80 204-283 259-343 (1080)
41 PLN03025 replication factor C 98.9 1.2E-09 2.6E-14 101.8 5.9 70 201-283 4-78 (319)
42 KOG0730 AAA+-type ATPase [Post 98.9 8.3E-10 1.8E-14 109.1 4.4 78 205-283 180-257 (693)
43 PRK00080 ruvB Holliday junctio 98.9 2.8E-09 6E-14 99.7 7.6 76 202-285 17-92 (328)
44 PRK14960 DNA polymerase III su 98.9 1.9E-09 4.1E-14 108.0 6.0 57 202-270 7-63 (702)
45 PHA02544 44 clamp loader, smal 98.9 3.6E-09 7.7E-14 98.0 7.1 70 196-279 9-78 (316)
46 PRK14958 DNA polymerase III su 98.8 3.4E-09 7.5E-14 104.6 6.1 57 202-270 8-64 (509)
47 PRK14964 DNA polymerase III su 98.8 4.5E-09 9.9E-14 102.9 6.8 74 202-287 5-102 (491)
48 TIGR02881 spore_V_K stage V sp 98.8 4.9E-09 1.1E-13 95.0 6.5 73 208-281 4-86 (261)
49 PRK10733 hflB ATP-dependent me 98.8 4.3E-09 9.4E-14 106.8 6.7 76 205-281 147-222 (644)
50 TIGR00635 ruvB Holliday juncti 98.8 6.1E-09 1.3E-13 96.0 6.9 68 208-283 2-69 (305)
51 COG2256 MGS1 ATPase related to 98.8 2.4E-09 5.2E-14 100.8 3.8 64 203-279 17-83 (436)
52 PRK14956 DNA polymerase III su 98.8 3.7E-09 8.1E-14 102.9 5.3 58 201-270 9-66 (484)
53 CHL00206 ycf2 Ycf2; Provisiona 98.8 2.5E-09 5.4E-14 115.8 3.8 52 232-283 1618-1669(2281)
54 TIGR02880 cbbX_cfxQ probable R 98.8 6.4E-09 1.4E-13 95.6 5.8 70 211-281 23-102 (284)
55 PRK14955 DNA polymerase III su 98.8 7.3E-09 1.6E-13 99.4 6.3 57 202-270 8-64 (397)
56 PRK14961 DNA polymerase III su 98.8 8E-09 1.7E-13 98.0 6.3 57 202-270 8-64 (363)
57 KOG1969 DNA replication checkp 98.8 1.1E-08 2.4E-13 102.2 7.4 89 197-287 260-369 (877)
58 CHL00181 cbbX CbbX; Provisiona 98.8 6.6E-09 1.4E-13 95.6 5.4 70 210-280 23-102 (287)
59 PRK12323 DNA polymerase III su 98.8 7.3E-09 1.6E-13 103.7 5.9 57 202-270 8-64 (700)
60 PRK06645 DNA polymerase III su 98.8 9.8E-09 2.1E-13 101.2 6.8 57 202-270 13-69 (507)
61 PF03215 Rad17: Rad17 cell cyc 98.8 1.6E-08 3.5E-13 99.9 8.2 74 194-277 5-78 (519)
62 KOG0742 AAA+-type ATPase [Post 98.8 9.8E-09 2.1E-13 96.9 6.1 122 153-281 299-421 (630)
63 PRK07003 DNA polymerase III su 98.8 8.4E-09 1.8E-13 104.6 6.0 57 202-270 8-64 (830)
64 PF05673 DUF815: Protein of un 98.8 1.2E-08 2.5E-13 91.1 6.2 82 195-285 12-96 (249)
65 KOG0744 AAA+-type ATPase [Post 98.7 7.8E-09 1.7E-13 95.0 4.0 75 196-270 128-203 (423)
66 TIGR00390 hslU ATP-dependent p 98.7 1.8E-08 3.8E-13 96.5 6.5 71 211-281 13-84 (441)
67 PRK14969 DNA polymerase III su 98.7 1.6E-08 3.5E-13 100.3 6.3 57 202-270 8-64 (527)
68 PRK14952 DNA polymerase III su 98.7 1.8E-08 3.9E-13 100.8 6.2 57 202-270 5-61 (584)
69 PRK14963 DNA polymerase III su 98.7 1.7E-08 3.7E-13 99.6 6.0 57 202-270 6-62 (504)
70 PRK14949 DNA polymerase III su 98.7 1.7E-08 3.8E-13 104.0 6.2 58 202-271 8-65 (944)
71 KOG0741 AAA+-type ATPase [Post 98.7 7.6E-08 1.7E-12 93.4 10.1 77 207-283 216-296 (744)
72 PRK12402 replication factor C 98.7 1.9E-08 4.2E-13 93.5 5.9 69 197-280 4-77 (337)
73 PRK05896 DNA polymerase III su 98.7 2.2E-08 4.7E-13 100.0 6.5 57 202-270 8-64 (605)
74 PRK07994 DNA polymerase III su 98.7 1.9E-08 4.1E-13 101.5 5.8 57 202-270 8-64 (647)
75 PRK08691 DNA polymerase III su 98.7 2.4E-08 5.3E-13 100.8 6.3 57 202-270 8-64 (709)
76 PRK13342 recombination factor 98.7 2.3E-08 5E-13 96.5 5.9 66 202-280 4-72 (413)
77 smart00763 AAA_PrkA PrkA AAA d 98.7 5E-08 1.1E-12 91.9 8.0 64 207-278 47-119 (361)
78 PRK14957 DNA polymerase III su 98.7 2.6E-08 5.6E-13 98.9 6.3 57 202-270 8-64 (546)
79 PRK14951 DNA polymerase III su 98.7 2.2E-08 4.7E-13 100.7 5.8 57 202-270 8-64 (618)
80 PRK14954 DNA polymerase III su 98.7 2.8E-08 6.1E-13 100.0 6.4 57 202-270 8-64 (620)
81 TIGR00763 lon ATP-dependent pr 98.7 4E-08 8.7E-13 101.8 7.6 69 211-286 321-389 (775)
82 COG0466 Lon ATP-dependent Lon 98.7 3.7E-08 8E-13 98.5 6.8 68 212-287 325-393 (782)
83 PRK05563 DNA polymerase III su 98.6 4.2E-08 9E-13 98.1 6.6 56 202-269 8-63 (559)
84 PRK14965 DNA polymerase III su 98.6 3.8E-08 8.2E-13 98.8 6.3 57 202-270 8-64 (576)
85 PRK06305 DNA polymerase III su 98.6 4.6E-08 1E-12 95.4 6.4 57 202-270 9-65 (451)
86 PRK07764 DNA polymerase III su 98.6 4.2E-08 9.1E-13 101.7 6.1 57 202-270 7-63 (824)
87 PRK14970 DNA polymerase III su 98.6 5.5E-08 1.2E-12 92.2 6.1 57 202-270 9-65 (367)
88 PRK07133 DNA polymerase III su 98.6 5.9E-08 1.3E-12 98.7 6.4 57 202-270 10-66 (725)
89 PRK06647 DNA polymerase III su 98.6 6.5E-08 1.4E-12 96.6 6.3 57 202-270 8-64 (563)
90 PRK14959 DNA polymerase III su 98.6 7.1E-08 1.5E-12 96.7 6.5 58 201-270 7-64 (624)
91 PRK05342 clpX ATP-dependent pr 98.6 7.8E-08 1.7E-12 92.7 6.5 75 208-282 68-146 (412)
92 PRK14953 DNA polymerase III su 98.6 8.1E-08 1.7E-12 94.5 6.6 57 202-270 8-64 (486)
93 TIGR02397 dnaX_nterm DNA polym 98.6 8.9E-08 1.9E-12 89.8 6.5 56 202-269 6-61 (355)
94 PRK05201 hslU ATP-dependent pr 98.6 7.2E-08 1.6E-12 92.4 5.8 72 211-282 16-88 (443)
95 PRK14950 DNA polymerase III su 98.6 8.4E-08 1.8E-12 96.5 6.5 57 202-270 8-64 (585)
96 PRK09111 DNA polymerase III su 98.6 8.5E-08 1.8E-12 96.4 6.3 58 202-271 16-73 (598)
97 PRK08451 DNA polymerase III su 98.6 9.4E-08 2E-12 94.6 6.2 56 202-269 6-61 (535)
98 PRK00440 rfc replication facto 98.5 1.3E-07 2.8E-12 87.2 6.3 68 196-278 5-77 (319)
99 PRK07952 DNA replication prote 98.5 6E-08 1.3E-12 87.2 3.7 73 202-281 64-139 (244)
100 PF06068 TIP49: TIP49 C-termin 98.5 2.2E-07 4.7E-12 87.4 7.0 68 208-283 22-91 (398)
101 COG1224 TIP49 DNA helicase TIP 98.5 2.2E-07 4.8E-12 86.5 6.2 69 208-284 37-107 (450)
102 PRK14971 DNA polymerase III su 98.5 2E-07 4.3E-12 94.1 6.4 56 202-269 9-64 (614)
103 PRK14948 DNA polymerase III su 98.5 2.1E-07 4.6E-12 94.0 6.6 57 202-270 8-64 (620)
104 TIGR02640 gas_vesic_GvpN gas v 98.4 4.6E-07 1E-11 82.2 7.4 39 244-282 21-59 (262)
105 KOG2004 Mitochondrial ATP-depe 98.4 3.5E-07 7.6E-12 91.5 6.8 70 211-287 412-481 (906)
106 TIGR01650 PD_CobS cobaltochela 98.4 4.2E-07 9.1E-12 84.7 6.5 44 243-286 63-106 (327)
107 TIGR00382 clpX endopeptidase C 98.4 4.1E-07 8.8E-12 87.6 6.3 74 208-281 74-153 (413)
108 PRK07940 DNA polymerase III su 98.4 3E-07 6.6E-12 88.2 4.8 61 208-271 3-63 (394)
109 PRK13341 recombination factor 98.4 3.4E-07 7.4E-12 93.9 5.2 67 202-278 20-86 (725)
110 PRK08939 primosomal protein Dn 98.3 7E-07 1.5E-11 82.9 6.0 70 206-280 123-195 (306)
111 PRK08903 DnaA regulatory inact 98.3 1.2E-06 2.6E-11 77.4 7.2 69 202-280 10-81 (227)
112 PRK10787 DNA-binding ATP-depen 98.3 9.9E-07 2.1E-11 91.4 7.7 69 211-286 323-391 (784)
113 KOG0991 Replication factor C, 98.3 2.7E-07 5.8E-12 81.7 3.0 71 197-282 16-91 (333)
114 KOG2028 ATPase related to the 98.3 6.1E-07 1.3E-11 84.0 5.2 70 202-281 130-202 (554)
115 TIGR00602 rad24 checkpoint pro 98.3 4.3E-07 9.3E-12 91.7 4.2 69 196-274 72-140 (637)
116 PF08740 BCS1_N: BCS1 N termin 98.3 4.1E-05 9E-10 65.7 16.0 136 59-212 27-187 (187)
117 TIGR03420 DnaA_homol_Hda DnaA 98.3 1.3E-06 2.8E-11 76.7 6.3 68 203-281 8-78 (226)
118 TIGR02902 spore_lonB ATP-depen 98.3 1.1E-06 2.4E-11 87.5 6.1 65 202-279 57-131 (531)
119 KOG1970 Checkpoint RAD17-RFC c 98.3 1.3E-06 2.8E-11 85.4 5.7 75 194-276 68-142 (634)
120 cd00009 AAA The AAA+ (ATPases 98.2 2.3E-06 4.9E-11 68.2 6.2 40 244-283 19-61 (151)
121 COG2607 Predicted ATPase (AAA+ 98.2 1.9E-06 4.1E-11 76.6 6.1 81 196-285 46-129 (287)
122 PRK15455 PrkA family serine pr 98.2 2.1E-06 4.6E-11 85.1 7.1 67 205-278 71-138 (644)
123 PF01078 Mg_chelatase: Magnesi 98.2 1.1E-06 2.3E-11 76.9 4.5 46 208-268 1-46 (206)
124 PF13207 AAA_17: AAA domain; P 98.2 1.1E-06 2.4E-11 69.5 3.9 31 247-277 2-32 (121)
125 PRK12377 putative replication 98.2 3.1E-06 6.7E-11 76.4 6.9 68 207-281 71-141 (248)
126 TIGR02903 spore_lon_C ATP-depe 98.2 2.2E-06 4.8E-11 86.7 6.5 65 203-280 147-221 (615)
127 PRK11034 clpA ATP-dependent Cl 98.2 2.7E-06 5.8E-11 87.8 6.9 63 212-282 460-526 (758)
128 TIGR02639 ClpA ATP-dependent C 98.2 2E-06 4.4E-11 88.7 5.6 65 205-282 177-251 (731)
129 PHA02244 ATPase-like protein 98.2 4.6E-06 1E-10 78.9 7.1 34 244-277 119-152 (383)
130 PRK08116 hypothetical protein; 98.1 4.2E-06 9.1E-11 76.3 6.4 69 207-280 82-153 (268)
131 PRK06893 DNA replication initi 98.1 5.3E-06 1.1E-10 73.8 6.8 66 201-277 7-75 (229)
132 COG1220 HslU ATP-dependent pro 98.1 4.9E-06 1.1E-10 77.2 6.6 72 211-282 16-88 (444)
133 PRK07471 DNA polymerase III su 98.1 3.8E-06 8.2E-11 79.9 6.1 54 204-269 13-66 (365)
134 COG0714 MoxR-like ATPases [Gen 98.1 4.7E-06 1E-10 78.0 6.6 43 244-286 43-85 (329)
135 TIGR02928 orc1/cdc6 family rep 98.1 6.8E-06 1.5E-10 77.5 7.6 64 210-282 15-87 (365)
136 TIGR02639 ClpA ATP-dependent C 98.1 5.4E-06 1.2E-10 85.6 7.0 63 212-282 456-522 (731)
137 COG1484 DnaC DNA replication p 98.1 5.8E-06 1.3E-10 74.8 5.8 67 208-282 77-146 (254)
138 COG2812 DnaX DNA polymerase II 98.1 2.3E-06 4.9E-11 84.2 3.3 57 203-271 9-65 (515)
139 PF06309 Torsin: Torsin; Inte 98.0 8.6E-06 1.9E-10 65.8 5.5 51 210-268 25-77 (127)
140 COG1219 ClpX ATP-dependent pro 98.0 2.5E-06 5.4E-11 78.6 2.6 76 208-283 58-136 (408)
141 PRK10865 protein disaggregatio 98.0 7.8E-06 1.7E-10 85.7 6.6 66 204-282 172-247 (857)
142 PRK06620 hypothetical protein; 98.0 1.1E-05 2.3E-10 71.2 6.5 62 204-272 10-72 (214)
143 PHA02624 large T antigen; Prov 98.0 1.2E-05 2.5E-10 80.2 7.3 40 240-279 427-466 (647)
144 PRK13407 bchI magnesium chelat 98.0 6.6E-06 1.4E-10 77.3 5.2 51 205-268 3-53 (334)
145 PRK08084 DNA replication initi 98.0 1.3E-05 2.8E-10 71.6 6.2 64 203-277 15-81 (235)
146 PRK09112 DNA polymerase III su 98.0 1.1E-05 2.5E-10 76.2 6.1 55 204-270 17-71 (351)
147 CHL00095 clpC Clp protease ATP 98.0 8.3E-06 1.8E-10 85.2 5.5 63 207-282 176-248 (821)
148 PRK00411 cdc6 cell division co 98.0 2.2E-05 4.8E-10 74.8 8.0 65 209-282 29-98 (394)
149 PRK05564 DNA polymerase III su 98.0 1.2E-05 2.7E-10 74.6 5.9 50 208-269 2-51 (313)
150 COG0470 HolB ATPase involved i 97.9 1.6E-05 3.4E-10 73.3 6.0 39 245-283 25-87 (325)
151 TIGR03345 VI_ClpV1 type VI sec 97.9 2E-05 4.4E-10 82.5 6.7 66 204-282 181-256 (852)
152 KOG1942 DNA helicase, TBP-inte 97.9 1.3E-05 2.9E-10 73.3 4.6 68 209-284 37-106 (456)
153 COG0606 Predicted ATPase with 97.9 8.6E-06 1.9E-10 78.7 3.4 48 206-268 175-222 (490)
154 PF01695 IstB_IS21: IstB-like 97.9 7.6E-06 1.7E-10 70.1 2.8 37 244-280 47-86 (178)
155 PRK06921 hypothetical protein; 97.9 3.1E-05 6.7E-10 70.6 6.6 36 244-279 117-156 (266)
156 PRK08154 anaerobic benzoate ca 97.9 2.9E-05 6.2E-10 72.3 6.3 58 214-276 108-165 (309)
157 PRK05642 DNA replication initi 97.8 4.1E-05 8.8E-10 68.4 6.6 72 202-281 11-85 (234)
158 PRK00149 dnaA chromosomal repl 97.8 3.5E-05 7.6E-10 75.2 6.7 70 203-280 115-189 (450)
159 TIGR00362 DnaA chromosomal rep 97.8 3.8E-05 8.2E-10 73.9 6.8 70 203-280 103-177 (405)
160 PRK08181 transposase; Validate 97.8 2.9E-05 6.2E-10 70.9 5.6 37 244-280 106-145 (269)
161 PF00158 Sigma54_activat: Sigm 97.8 5.3E-05 1.2E-09 64.4 6.7 59 213-282 2-63 (168)
162 TIGR03346 chaperone_ClpB ATP-d 97.8 3.1E-05 6.6E-10 81.3 6.2 65 204-281 167-241 (852)
163 PRK06835 DNA replication prote 97.8 3.5E-05 7.6E-10 72.3 5.9 36 245-280 184-222 (329)
164 CHL00081 chlI Mg-protoporyphyr 97.8 2.1E-05 4.5E-10 74.3 4.1 50 207-269 14-63 (350)
165 PRK14088 dnaA chromosomal repl 97.7 5.9E-05 1.3E-09 73.5 6.8 68 203-279 98-170 (440)
166 CHL00095 clpC Clp protease ATP 97.7 5.9E-05 1.3E-09 78.9 7.2 65 210-282 509-580 (821)
167 TIGR03345 VI_ClpV1 type VI sec 97.7 5.1E-05 1.1E-09 79.6 6.6 66 210-283 566-638 (852)
168 PRK11331 5-methylcytosine-spec 97.7 4E-05 8.6E-10 74.4 5.1 27 244-270 194-220 (459)
169 TIGR00764 lon_rel lon-related 97.7 4.6E-05 9.9E-10 77.1 5.5 50 207-271 15-64 (608)
170 PRK13765 ATP-dependent proteas 97.7 4.8E-05 1E-09 77.1 5.3 53 203-270 24-76 (637)
171 PRK07399 DNA polymerase III su 97.7 5.8E-05 1.3E-09 70.4 5.2 51 208-270 2-52 (314)
172 COG1855 ATPase (PilT family) [ 97.7 0.00022 4.8E-09 68.7 9.1 103 142-269 170-288 (604)
173 PRK10865 protein disaggregatio 97.7 8.1E-05 1.7E-09 78.2 6.8 66 209-282 567-639 (857)
174 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00011 2.4E-09 77.1 7.3 66 210-283 565-637 (852)
175 KOG0990 Replication factor C, 97.6 3.5E-05 7.6E-10 71.1 2.9 60 196-270 29-88 (360)
176 TIGR01817 nifA Nif-specific re 97.6 0.00014 3.1E-09 72.4 7.5 65 206-281 192-259 (534)
177 PHA00729 NTP-binding motif con 97.6 4.1E-05 8.9E-10 68.0 3.1 28 245-272 18-45 (226)
178 PRK12422 chromosomal replicati 97.6 0.0001 2.2E-09 71.9 6.2 73 203-279 104-179 (445)
179 PRK15424 propionate catabolism 97.6 0.00014 3.1E-09 72.4 7.1 65 207-282 216-291 (538)
180 KOG0736 Peroxisome assembly fa 97.6 5.3E-05 1.2E-09 76.8 4.0 41 244-284 431-471 (953)
181 PRK08727 hypothetical protein; 97.6 0.00015 3.3E-09 64.6 6.4 65 203-279 12-79 (233)
182 PRK06526 transposase; Provisio 97.5 5.7E-05 1.2E-09 68.4 3.3 35 244-278 98-135 (254)
183 PF13401 AAA_22: AAA domain; P 97.5 4.1E-05 9E-10 61.0 2.1 37 245-281 5-49 (131)
184 PRK08058 DNA polymerase III su 97.5 0.00012 2.6E-09 68.7 5.2 51 208-270 3-54 (329)
185 PF13086 AAA_11: AAA domain; P 97.5 8.4E-05 1.8E-09 64.5 3.9 22 247-268 20-41 (236)
186 PRK09087 hypothetical protein; 97.5 0.00024 5.2E-09 63.2 6.8 62 203-275 14-75 (226)
187 TIGR02030 BchI-ChlI magnesium 97.5 0.00011 2.3E-09 69.3 4.7 48 208-268 2-49 (337)
188 PF00910 RNA_helicase: RNA hel 97.5 7.3E-05 1.6E-09 58.5 3.0 23 247-269 1-23 (107)
189 PHA02774 E1; Provisional 97.5 0.0002 4.4E-09 71.3 6.8 37 240-276 430-467 (613)
190 PRK09183 transposase/IS protei 97.5 8E-05 1.7E-09 67.6 3.6 37 244-280 102-141 (259)
191 PRK11608 pspF phage shock prot 97.5 0.00027 5.9E-09 66.2 7.1 63 208-281 4-69 (326)
192 COG5271 MDN1 AAA ATPase contai 97.5 1.2E-05 2.5E-10 86.6 -2.3 208 71-285 920-1214(4600)
193 PRK13531 regulatory ATPase Rav 97.5 0.00015 3.2E-09 71.1 5.3 27 244-270 39-65 (498)
194 PRK11034 clpA ATP-dependent Cl 97.5 0.00014 3.1E-09 75.2 5.4 61 208-281 184-254 (758)
195 PRK06547 hypothetical protein; 97.5 0.00019 4.1E-09 61.2 5.1 33 244-276 15-47 (172)
196 PF13245 AAA_19: Part of AAA d 97.4 0.00023 5E-09 52.5 4.8 32 247-278 13-51 (76)
197 PF13191 AAA_16: AAA ATPase do 97.4 7.4E-05 1.6E-09 62.9 2.4 37 244-280 24-63 (185)
198 PF08298 AAA_PrkA: PrkA AAA do 97.4 0.00044 9.6E-09 65.1 7.4 67 209-283 59-128 (358)
199 TIGR02329 propionate_PrpR prop 97.4 0.00031 6.8E-09 69.9 6.7 66 206-282 208-276 (526)
200 KOG0745 Putative ATP-dependent 97.4 0.00016 3.5E-09 69.2 4.4 39 244-282 226-264 (564)
201 PRK11388 DNA-binding transcrip 97.4 0.00039 8.3E-09 70.8 7.4 65 207-282 322-389 (638)
202 PRK15429 formate hydrogenlyase 97.4 0.00036 7.7E-09 71.7 7.0 64 207-281 373-439 (686)
203 PLN02200 adenylate kinase fami 97.4 0.00022 4.7E-09 63.8 4.7 30 245-274 44-73 (234)
204 PRK14087 dnaA chromosomal repl 97.4 0.00028 6.2E-09 69.0 5.8 67 206-280 111-182 (450)
205 TIGR02442 Cob-chelat-sub cobal 97.4 0.00025 5.5E-09 72.2 5.6 48 208-268 2-49 (633)
206 PF00308 Bac_DnaA: Bacterial d 97.4 0.00041 8.9E-09 61.4 6.2 67 205-279 3-74 (219)
207 cd02019 NK Nucleoside/nucleoti 97.4 0.00034 7.3E-09 50.4 4.7 22 247-268 2-23 (69)
208 PTZ00112 origin recognition co 97.4 0.00056 1.2E-08 71.1 7.8 38 246-283 783-830 (1164)
209 COG0542 clpA ATP-binding subun 97.3 0.00022 4.9E-09 73.2 4.8 66 210-283 491-563 (786)
210 COG1474 CDC6 Cdc6-related prot 97.3 0.00055 1.2E-08 65.2 6.7 62 212-282 19-85 (366)
211 PRK10820 DNA-binding transcrip 97.3 0.00061 1.3E-08 67.8 7.1 66 206-282 200-268 (520)
212 PRK14086 dnaA chromosomal repl 97.3 0.00044 9.6E-09 69.6 5.9 71 203-281 281-356 (617)
213 TIGR02974 phageshock_pspF psp 97.3 0.00073 1.6E-08 63.5 7.0 58 213-281 2-62 (329)
214 PLN02199 shikimate kinase 97.2 0.0003 6.6E-09 64.8 4.1 34 244-277 102-135 (303)
215 PRK05022 anaerobic nitric oxid 97.2 0.00078 1.7E-08 66.9 7.2 64 208-282 185-251 (509)
216 PF13173 AAA_14: AAA domain 97.2 0.00045 9.7E-09 55.6 4.5 38 245-282 3-42 (128)
217 PF12774 AAA_6: Hydrolytic ATP 97.2 0.00029 6.3E-09 62.9 3.7 42 244-285 32-73 (231)
218 PRK06696 uridine kinase; Valid 97.2 0.001 2.3E-08 58.7 7.0 37 245-281 23-62 (223)
219 TIGR00150 HI0065_YjeE ATPase, 97.1 0.00057 1.2E-08 55.9 4.1 27 245-271 23-49 (133)
220 PLN02674 adenylate kinase 97.1 0.00054 1.2E-08 61.7 4.2 32 244-275 31-62 (244)
221 cd01394 radB RadB. The archaea 97.1 0.001 2.2E-08 58.2 5.6 40 240-279 15-57 (218)
222 PF13177 DNA_pol3_delta2: DNA 97.1 0.0012 2.5E-08 55.7 5.6 27 243-269 18-44 (162)
223 TIGR02782 TrbB_P P-type conjug 97.0 0.0012 2.7E-08 61.1 6.2 25 244-268 132-156 (299)
224 PF12775 AAA_7: P-loop contain 97.0 0.0013 2.9E-08 60.0 6.3 62 207-279 7-71 (272)
225 PF00437 T2SE: Type II/IV secr 97.0 0.00084 1.8E-08 60.8 4.8 61 205-276 99-162 (270)
226 PF14532 Sigma54_activ_2: Sigm 97.0 0.00069 1.5E-08 55.2 3.8 46 214-270 2-47 (138)
227 TIGR00064 ftsY signal recognit 97.0 0.002 4.4E-08 58.9 7.3 36 244-279 72-110 (272)
228 PF06745 KaiC: KaiC; InterPro 97.0 0.00092 2E-08 58.9 4.8 40 240-279 15-58 (226)
229 COG1221 PspF Transcriptional r 97.0 0.0012 2.6E-08 63.4 5.6 69 206-285 74-146 (403)
230 COG3829 RocR Transcriptional r 97.0 0.0017 3.7E-08 64.0 6.7 68 204-282 239-309 (560)
231 PLN02459 probable adenylate ki 96.9 0.00094 2E-08 60.6 4.4 30 246-275 31-60 (261)
232 TIGR02524 dot_icm_DotB Dot/Icm 96.9 0.0014 2.9E-08 62.4 5.7 23 246-268 136-158 (358)
233 cd01130 VirB11-like_ATPase Typ 96.9 0.0014 3.1E-08 56.2 5.4 26 244-269 25-50 (186)
234 PRK13764 ATPase; Provisional 96.9 0.001 2.2E-08 67.1 5.0 26 244-269 257-282 (602)
235 TIGR03878 thermo_KaiC_2 KaiC d 96.9 0.0012 2.5E-08 59.9 5.0 40 240-279 32-74 (259)
236 KOG0741 AAA+-type ATPase [Post 96.9 0.0014 3.1E-08 64.3 5.8 33 245-277 539-571 (744)
237 PF13604 AAA_30: AAA domain; P 96.9 0.0025 5.4E-08 55.3 6.8 34 245-278 19-55 (196)
238 PRK06067 flagellar accessory p 96.9 0.0016 3.4E-08 57.8 5.6 40 240-279 21-63 (234)
239 COG0467 RAD55 RecA-superfamily 96.9 0.0014 3E-08 59.2 5.4 40 240-279 19-61 (260)
240 TIGR03877 thermo_KaiC_1 KaiC d 96.9 0.0015 3.2E-08 58.3 5.4 40 240-279 17-59 (237)
241 TIGR03015 pepcterm_ATPase puta 96.9 0.0018 3.8E-08 58.3 5.9 24 246-269 45-68 (269)
242 PRK09361 radB DNA repair and r 96.9 0.0016 3.5E-08 57.2 5.6 39 240-278 19-60 (225)
243 PRK00771 signal recognition pa 96.9 0.0022 4.7E-08 62.5 6.7 37 244-280 95-134 (437)
244 PRK05973 replicative DNA helic 96.9 0.0017 3.6E-08 58.3 5.2 40 240-279 60-102 (237)
245 PLN02165 adenylate isopentenyl 96.8 0.0011 2.4E-08 62.2 3.9 31 246-276 45-75 (334)
246 PRK10416 signal recognition pa 96.8 0.0026 5.7E-08 59.5 6.4 34 245-278 115-151 (318)
247 TIGR03499 FlhF flagellar biosy 96.8 0.0027 5.9E-08 58.3 6.5 35 245-279 195-234 (282)
248 cd01129 PulE-GspE PulE/GspE Th 96.8 0.0029 6.2E-08 57.6 6.4 55 207-276 57-115 (264)
249 PRK13833 conjugal transfer pro 96.8 0.0026 5.7E-08 59.6 6.2 25 244-268 144-168 (323)
250 TIGR00368 Mg chelatase-related 96.8 0.00082 1.8E-08 66.5 3.0 47 207-268 189-235 (499)
251 TIGR02525 plasmid_TraJ plasmid 96.8 0.0026 5.6E-08 60.8 6.2 31 246-276 151-186 (372)
252 PF00519 PPV_E1_C: Papillomavi 96.8 0.0031 6.6E-08 60.1 6.6 36 240-275 258-293 (432)
253 KOG1968 Replication factor C, 96.8 0.00086 1.9E-08 70.1 3.0 90 196-287 308-400 (871)
254 PRK08533 flagellar accessory p 96.8 0.0025 5.4E-08 56.8 5.6 39 240-278 20-61 (230)
255 cd01123 Rad51_DMC1_radA Rad51_ 96.8 0.0022 4.7E-08 56.6 5.2 40 240-279 15-63 (235)
256 TIGR00376 DNA helicase, putati 96.8 0.0025 5.5E-08 65.0 6.3 35 245-279 174-211 (637)
257 PTZ00202 tuzin; Provisional 96.7 0.004 8.6E-08 60.6 7.0 63 206-278 258-320 (550)
258 TIGR03881 KaiC_arch_4 KaiC dom 96.7 0.0028 6.1E-08 55.8 5.5 39 240-278 16-57 (229)
259 PRK04220 2-phosphoglycerate ki 96.7 0.0044 9.5E-08 57.4 6.9 29 244-272 92-120 (301)
260 TIGR02533 type_II_gspE general 96.7 0.0029 6.4E-08 62.5 5.9 56 206-276 218-277 (486)
261 KOG0735 AAA+-type ATPase [Post 96.7 0.002 4.3E-08 65.3 4.7 63 210-283 408-474 (952)
262 COG0529 CysC Adenylylsulfate k 96.7 0.0031 6.7E-08 53.9 5.2 37 246-282 25-64 (197)
263 TIGR01425 SRP54_euk signal rec 96.7 0.0037 8E-08 60.7 6.3 36 244-279 100-138 (429)
264 PRK12723 flagellar biosynthesi 96.6 0.0048 1E-07 59.2 6.9 36 244-279 174-216 (388)
265 KOG2170 ATPase of the AAA+ sup 96.6 0.0031 6.7E-08 58.1 5.3 50 211-268 83-134 (344)
266 TIGR02655 circ_KaiC circadian 96.6 0.0026 5.7E-08 62.8 5.2 39 240-278 17-59 (484)
267 PRK10867 signal recognition pa 96.6 0.004 8.6E-08 60.6 6.3 38 244-281 100-141 (433)
268 PRK10436 hypothetical protein; 96.6 0.0044 9.5E-08 60.8 6.6 56 206-276 194-253 (462)
269 PRK12337 2-phosphoglycerate ki 96.6 0.0048 1E-07 60.3 6.8 28 244-271 255-282 (475)
270 PRK08699 DNA polymerase III su 96.6 0.0026 5.5E-08 59.7 4.7 27 243-269 20-46 (325)
271 COG3842 PotA ABC-type spermidi 96.6 0.0012 2.5E-08 62.4 2.4 29 242-270 27-57 (352)
272 COG1116 TauB ABC-type nitrate/ 96.6 0.0011 2.3E-08 59.5 2.0 31 241-271 24-56 (248)
273 TIGR03880 KaiC_arch_3 KaiC dom 96.6 0.0039 8.5E-08 54.8 5.6 40 240-279 12-54 (224)
274 PRK05707 DNA polymerase III su 96.6 0.0018 3.9E-08 60.8 3.5 28 243-270 21-48 (328)
275 PRK03846 adenylylsulfate kinas 96.6 0.0028 6E-08 54.9 4.5 36 245-280 25-63 (198)
276 PRK04328 hypothetical protein; 96.6 0.0037 8.1E-08 56.3 5.4 40 240-279 19-61 (249)
277 PLN03210 Resistant to P. syrin 96.6 0.0023 5E-08 69.5 4.7 60 201-271 175-234 (1153)
278 TIGR02012 tigrfam_recA protein 96.5 0.0035 7.6E-08 58.7 5.2 40 240-279 51-93 (321)
279 cd01393 recA_like RecA is a b 96.5 0.0031 6.7E-08 55.3 4.6 40 240-279 15-63 (226)
280 COG4619 ABC-type uncharacteriz 96.5 0.0016 3.4E-08 55.6 2.5 30 240-269 23-54 (223)
281 COG5271 MDN1 AAA ATPase contai 96.5 0.0021 4.6E-08 70.2 4.0 41 243-283 1542-1582(4600)
282 PRK13894 conjugal transfer ATP 96.5 0.0037 8.1E-08 58.5 5.2 25 244-268 148-172 (319)
283 TIGR02236 recomb_radA DNA repa 96.5 0.0034 7.3E-08 58.2 4.9 40 240-279 91-139 (310)
284 COG0464 SpoVK ATPases of the A 96.5 0.002 4.2E-08 63.6 3.5 53 230-283 4-56 (494)
285 TIGR00455 apsK adenylylsulfate 96.5 0.0029 6.3E-08 53.9 4.1 36 245-280 19-57 (184)
286 PF04851 ResIII: Type III rest 96.5 0.0079 1.7E-07 50.1 6.6 34 244-277 25-58 (184)
287 PRK11823 DNA repair protein Ra 96.5 0.0039 8.6E-08 60.9 5.5 40 240-279 76-118 (446)
288 PRK11889 flhF flagellar biosyn 96.5 0.0068 1.5E-07 58.3 6.9 58 217-278 218-278 (436)
289 COG3839 MalK ABC-type sugar tr 96.5 0.0017 3.7E-08 61.0 2.7 29 242-270 25-55 (338)
290 COG2805 PilT Tfp pilus assembl 96.4 0.0035 7.6E-08 57.8 4.3 47 205-270 104-151 (353)
291 PRK14974 cell division protein 96.4 0.0088 1.9E-07 56.4 7.1 35 244-278 140-177 (336)
292 cd01122 GP4d_helicase GP4d_hel 96.4 0.0045 9.7E-08 55.9 4.9 40 240-279 26-69 (271)
293 KOG2680 DNA helicase TIP49, TB 96.4 0.0032 7E-08 58.1 3.8 44 240-283 62-107 (454)
294 COG2804 PulE Type II secretory 96.4 0.0043 9.4E-08 60.8 5.0 53 206-273 234-287 (500)
295 TIGR01420 pilT_fam pilus retra 96.4 0.0045 9.8E-08 58.4 5.0 24 246-269 124-147 (343)
296 TIGR01526 nadR_NMN_Atrans nico 96.4 0.0034 7.4E-08 58.9 4.1 31 244-274 162-192 (325)
297 PRK06964 DNA polymerase III su 96.4 0.0042 9.1E-08 58.7 4.7 29 242-270 19-47 (342)
298 cd00983 recA RecA is a bacter 96.4 0.0049 1.1E-07 57.7 5.1 40 240-279 51-93 (325)
299 PRK13477 bifunctional pantoate 96.4 0.0031 6.7E-08 62.6 3.9 28 247-274 287-314 (512)
300 PRK04301 radA DNA repair and r 96.4 0.0044 9.6E-08 57.7 4.7 40 240-279 98-146 (317)
301 PRK07667 uridine kinase; Provi 96.4 0.0055 1.2E-07 52.9 5.0 36 245-280 18-56 (193)
302 PRK12724 flagellar biosynthesi 96.4 0.011 2.3E-07 57.3 7.3 35 245-279 224-262 (432)
303 PRK10536 hypothetical protein; 96.4 0.0054 1.2E-07 55.6 5.0 37 246-282 76-116 (262)
304 PLN02840 tRNA dimethylallyltra 96.3 0.0037 8.1E-08 60.4 4.0 32 246-277 23-54 (421)
305 PF03969 AFG1_ATPase: AFG1-lik 96.3 0.0033 7.2E-08 59.8 3.7 29 241-269 59-87 (362)
306 PRK08099 bifunctional DNA-bind 96.3 0.0039 8.6E-08 60.1 4.1 30 244-273 219-248 (399)
307 TIGR02538 type_IV_pilB type IV 96.3 0.0065 1.4E-07 61.1 5.8 48 207-269 293-341 (564)
308 cd00820 PEPCK_HprK Phosphoenol 96.3 0.003 6.5E-08 49.7 2.6 22 244-265 15-36 (107)
309 PF01637 Arch_ATPase: Archaeal 96.3 0.0053 1.1E-07 53.1 4.4 26 244-269 20-45 (234)
310 smart00350 MCM minichromosome 96.3 0.0052 1.1E-07 61.1 4.7 29 246-274 238-266 (509)
311 PRK14722 flhF flagellar biosyn 96.2 0.004 8.8E-08 59.4 3.8 35 245-279 138-177 (374)
312 PF06431 Polyoma_lg_T_C: Polyo 96.2 0.0086 1.9E-07 56.6 5.7 39 240-278 151-189 (417)
313 PRK05703 flhF flagellar biosyn 96.2 0.011 2.5E-07 57.3 6.8 35 245-279 222-261 (424)
314 PRK04132 replication factor C 96.2 0.0025 5.4E-08 66.6 2.3 49 197-260 8-56 (846)
315 KOG2035 Replication factor C, 96.2 0.0046 1E-07 56.5 3.7 55 201-268 4-58 (351)
316 PRK13900 type IV secretion sys 96.2 0.011 2.5E-07 55.5 6.5 32 244-275 160-193 (332)
317 PRK10923 glnG nitrogen regulat 96.2 0.012 2.6E-07 57.4 6.9 62 209-281 137-201 (469)
318 PF00005 ABC_tran: ABC transpo 96.2 0.0026 5.6E-08 51.1 1.8 26 245-270 12-37 (137)
319 PF13555 AAA_29: P-loop contai 96.2 0.0063 1.4E-07 43.1 3.5 22 247-268 26-47 (62)
320 TIGR00959 ffh signal recogniti 96.2 0.011 2.4E-07 57.4 6.4 37 244-280 99-139 (428)
321 PRK12726 flagellar biosynthesi 96.1 0.0077 1.7E-07 57.6 4.9 39 244-282 206-247 (407)
322 PRK06851 hypothetical protein; 96.1 0.012 2.6E-07 56.1 6.2 36 243-278 213-251 (367)
323 PRK11860 bifunctional 3-phosph 96.1 0.0072 1.6E-07 62.0 5.1 40 235-274 430-472 (661)
324 PF02367 UPF0079: Uncharacteri 96.1 0.0055 1.2E-07 49.5 3.2 27 245-271 16-42 (123)
325 PF08477 Miro: Miro-like prote 96.1 0.0053 1.1E-07 47.8 3.1 23 247-269 2-24 (119)
326 cd01121 Sms Sms (bacterial rad 96.1 0.0097 2.1E-07 56.9 5.4 40 240-279 78-120 (372)
327 PRK06851 hypothetical protein; 96.0 0.012 2.6E-07 56.0 5.9 32 243-274 29-63 (367)
328 cd01983 Fer4_NifH The Fer4_Nif 96.0 0.01 2.3E-07 43.7 4.4 30 247-276 2-34 (99)
329 PF00931 NB-ARC: NB-ARC domain 96.0 0.008 1.7E-07 54.4 4.5 37 244-280 19-60 (287)
330 COG2204 AtoC Response regulato 96.0 0.017 3.7E-07 56.5 6.9 65 208-283 139-206 (464)
331 PRK09376 rho transcription ter 96.0 0.0053 1.1E-07 58.9 3.3 24 247-270 172-195 (416)
332 cd01918 HprK_C HprK/P, the bif 96.0 0.0057 1.2E-07 51.0 3.1 24 244-267 14-37 (149)
333 PRK08769 DNA polymerase III su 96.0 0.011 2.4E-07 55.3 5.3 28 243-270 25-52 (319)
334 PRK12608 transcription termina 96.0 0.0082 1.8E-07 57.2 4.4 24 247-270 136-159 (380)
335 COG1117 PstB ABC-type phosphat 96.0 0.0024 5.1E-08 56.4 0.7 29 241-269 30-58 (253)
336 TIGR02655 circ_KaiC circadian 95.9 0.011 2.4E-07 58.3 5.3 40 240-279 259-301 (484)
337 TIGR00750 lao LAO/AO transport 95.9 0.022 4.8E-07 52.7 7.0 35 244-278 34-71 (300)
338 PRK13851 type IV secretion sys 95.9 0.0073 1.6E-07 57.1 3.8 27 244-270 162-188 (344)
339 TIGR02688 conserved hypothetic 95.9 0.016 3.4E-07 56.2 6.0 24 244-267 209-232 (449)
340 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.9 0.0056 1.2E-07 53.4 2.8 24 246-269 32-55 (218)
341 PF12780 AAA_8: P-loop contain 95.9 0.0099 2.1E-07 54.3 4.4 37 244-280 31-67 (268)
342 TIGR02788 VirB11 P-type DNA tr 95.9 0.015 3.4E-07 53.9 5.8 27 243-269 143-169 (308)
343 cd01128 rho_factor Transcripti 95.9 0.0078 1.7E-07 54.4 3.6 26 245-270 17-42 (249)
344 PRK09302 circadian clock prote 95.9 0.013 2.8E-07 58.2 5.4 40 240-279 27-70 (509)
345 COG4178 ABC-type uncharacteriz 95.9 0.0056 1.2E-07 61.5 2.8 25 244-268 419-443 (604)
346 PRK05537 bifunctional sulfate 95.8 0.0071 1.5E-07 60.9 3.6 34 247-280 395-432 (568)
347 TIGR02915 PEP_resp_reg putativ 95.8 0.024 5.1E-07 54.9 7.1 62 209-281 138-202 (445)
348 PRK10646 ADP-binding protein; 95.8 0.011 2.3E-07 49.6 4.1 25 246-270 30-54 (153)
349 COG1120 FepC ABC-type cobalami 95.8 0.0051 1.1E-07 55.8 2.2 40 242-281 24-67 (258)
350 PLN02748 tRNA dimethylallyltra 95.8 0.0083 1.8E-07 58.9 3.9 32 246-277 24-55 (468)
351 COG1126 GlnQ ABC-type polar am 95.8 0.0053 1.1E-07 54.2 2.2 29 240-268 22-52 (240)
352 PRK09354 recA recombinase A; P 95.8 0.014 3E-07 55.3 5.2 40 240-279 56-98 (349)
353 PRK05439 pantothenate kinase; 95.8 0.018 3.8E-07 53.8 5.8 34 247-280 89-127 (311)
354 COG0593 DnaA ATPase involved i 95.8 0.02 4.3E-07 55.2 6.3 59 202-268 79-137 (408)
355 TIGR02673 FtsE cell division A 95.8 0.0047 1E-07 53.8 1.9 23 247-269 31-53 (214)
356 PRK09270 nucleoside triphospha 95.8 0.023 5E-07 50.3 6.3 26 245-270 34-59 (229)
357 cd03283 ABC_MutS-like MutS-lik 95.8 0.0099 2.2E-07 51.7 3.9 22 245-266 26-47 (199)
358 PRK12269 bifunctional cytidyla 95.8 0.0091 2E-07 62.7 4.2 30 246-275 36-65 (863)
359 KOG0060 Long-chain acyl-CoA tr 95.8 0.0063 1.4E-07 60.4 2.8 28 241-268 458-485 (659)
360 PF01926 MMR_HSR1: 50S ribosom 95.8 0.0072 1.6E-07 47.2 2.6 21 247-267 2-22 (116)
361 COG2074 2-phosphoglycerate kin 95.7 0.028 6.2E-07 50.7 6.5 40 234-273 78-118 (299)
362 PTZ00035 Rad51 protein; Provis 95.7 0.014 3E-07 55.0 4.8 29 240-268 114-142 (337)
363 COG3604 FhlA Transcriptional r 95.7 0.025 5.4E-07 55.5 6.5 66 206-282 219-287 (550)
364 COG4525 TauB ABC-type taurine 95.7 0.0081 1.8E-07 52.5 2.9 26 244-269 31-56 (259)
365 cd03262 ABC_HisP_GlnQ_permease 95.7 0.0066 1.4E-07 52.7 2.3 25 245-269 27-51 (213)
366 COG1239 ChlI Mg-chelatase subu 95.7 0.011 2.4E-07 56.8 3.9 50 207-269 14-63 (423)
367 TIGR02315 ABC_phnC phosphonate 95.7 0.0079 1.7E-07 53.4 2.8 24 246-269 30-53 (243)
368 cd03264 ABC_drug_resistance_li 95.7 0.007 1.5E-07 52.6 2.5 23 247-269 28-50 (211)
369 cd03269 ABC_putative_ATPase Th 95.7 0.0078 1.7E-07 52.3 2.8 23 247-269 29-51 (210)
370 TIGR03410 urea_trans_UrtE urea 95.7 0.0076 1.6E-07 53.1 2.7 24 246-269 28-51 (230)
371 TIGR01663 PNK-3'Pase polynucle 95.7 0.0093 2E-07 59.4 3.5 29 246-274 371-399 (526)
372 PRK09862 putative ATP-dependen 95.7 0.0096 2.1E-07 59.0 3.6 25 245-269 211-235 (506)
373 cd03257 ABC_NikE_OppD_transpor 95.7 0.0057 1.2E-07 53.7 1.8 23 247-269 34-56 (228)
374 TIGR00416 sms DNA repair prote 95.7 0.018 3.9E-07 56.5 5.4 40 240-279 90-132 (454)
375 cd03292 ABC_FtsE_transporter F 95.6 0.0083 1.8E-07 52.1 2.8 24 246-269 29-52 (214)
376 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.6 0.0042 9E-08 54.8 0.9 35 235-269 37-73 (224)
377 cd03247 ABCC_cytochrome_bd The 95.6 0.0091 2E-07 50.6 2.9 25 245-269 29-53 (178)
378 cd03258 ABC_MetN_methionine_tr 95.6 0.0085 1.8E-07 52.9 2.8 25 245-269 32-56 (233)
379 COG1124 DppF ABC-type dipeptid 95.6 0.007 1.5E-07 54.2 2.2 25 247-271 36-60 (252)
380 cd02034 CooC The accessory pro 95.6 0.022 4.7E-07 45.3 4.9 32 247-278 2-36 (116)
381 TIGR03608 L_ocin_972_ABC putat 95.6 0.0087 1.9E-07 51.7 2.8 24 246-269 26-49 (206)
382 cd03260 ABC_PstB_phosphate_tra 95.6 0.011 2.3E-07 52.0 3.4 23 246-268 28-50 (227)
383 PRK06995 flhF flagellar biosyn 95.6 0.016 3.5E-07 57.1 4.9 23 246-268 258-280 (484)
384 cd03267 ABC_NatA_like Similar 95.6 0.0049 1.1E-07 54.8 1.2 34 236-269 37-72 (236)
385 cd03228 ABCC_MRP_Like The MRP 95.6 0.01 2.2E-07 50.1 3.0 24 246-269 30-53 (171)
386 TIGR02858 spore_III_AA stage I 95.6 0.0089 1.9E-07 54.6 2.8 26 245-270 112-137 (270)
387 cd03294 ABC_Pro_Gly_Bertaine T 95.6 0.0055 1.2E-07 55.6 1.4 34 236-269 40-75 (269)
388 PRK11361 acetoacetate metaboli 95.6 0.034 7.3E-07 53.9 7.0 62 209-281 142-206 (457)
389 cd03256 ABC_PhnC_transporter A 95.5 0.0095 2.1E-07 52.8 2.8 24 246-269 29-52 (241)
390 TIGR02238 recomb_DMC1 meiotic 95.5 0.016 3.4E-07 54.1 4.4 40 240-279 92-140 (313)
391 PRK06871 DNA polymerase III su 95.5 0.012 2.7E-07 55.1 3.6 28 243-270 23-50 (325)
392 cd03226 ABC_cobalt_CbiO_domain 95.5 0.0088 1.9E-07 51.8 2.5 23 247-269 29-51 (205)
393 cd03369 ABCC_NFT1 Domain 2 of 95.5 0.0079 1.7E-07 52.2 2.1 22 247-268 37-58 (207)
394 TIGR02031 BchD-ChlD magnesium 95.5 0.012 2.5E-07 59.6 3.6 34 244-277 16-51 (589)
395 cd03254 ABCC_Glucan_exporter_l 95.5 0.01 2.3E-07 52.1 2.9 23 247-269 32-54 (229)
396 PRK10247 putative ABC transpor 95.5 0.011 2.4E-07 52.1 3.0 23 246-268 35-57 (225)
397 TIGR00554 panK_bact pantothena 95.5 0.026 5.6E-07 52.2 5.5 23 247-269 65-87 (290)
398 cd03225 ABC_cobalt_CbiO_domain 95.5 0.01 2.2E-07 51.5 2.8 23 247-269 30-52 (211)
399 PLN02796 D-glycerate 3-kinase 95.5 0.058 1.3E-06 51.0 7.9 33 247-279 103-138 (347)
400 cd03261 ABC_Org_Solvent_Resist 95.5 0.01 2.2E-07 52.6 2.7 24 246-269 28-51 (235)
401 TIGR00960 3a0501s02 Type II (G 95.5 0.01 2.2E-07 51.7 2.7 24 246-269 31-54 (216)
402 PRK13541 cytochrome c biogenes 95.5 0.011 2.4E-07 50.9 2.9 23 246-268 28-50 (195)
403 cd04155 Arl3 Arl3 subfamily. 95.5 0.011 2.3E-07 49.1 2.7 24 244-267 14-37 (173)
404 cd03301 ABC_MalK_N The N-termi 95.5 0.011 2.3E-07 51.5 2.8 24 246-269 28-51 (213)
405 cd03246 ABCC_Protease_Secretio 95.4 0.013 2.8E-07 49.5 3.2 23 247-269 31-53 (173)
406 TIGR02211 LolD_lipo_ex lipopro 95.4 0.011 2.3E-07 51.8 2.8 24 246-269 33-56 (221)
407 PF13476 AAA_23: AAA domain; P 95.4 0.0093 2E-07 50.5 2.3 27 244-270 18-45 (202)
408 TIGR01166 cbiO cobalt transpor 95.4 0.011 2.4E-07 50.5 2.7 24 246-269 20-43 (190)
409 cd00879 Sar1 Sar1 subfamily. 95.4 0.027 5.9E-07 47.6 5.1 31 236-266 10-41 (190)
410 PRK11124 artP arginine transpo 95.4 0.0096 2.1E-07 52.9 2.4 24 246-269 30-53 (242)
411 PLN03187 meiotic recombination 95.4 0.015 3.2E-07 55.0 3.7 40 240-279 122-170 (344)
412 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.4 0.011 2.4E-07 48.5 2.5 25 245-269 27-51 (144)
413 PRK14247 phosphate ABC transpo 95.4 0.012 2.6E-07 52.5 3.0 24 246-269 31-54 (250)
414 cd03224 ABC_TM1139_LivF_branch 95.4 0.0096 2.1E-07 52.1 2.3 24 246-269 28-51 (222)
415 PF02562 PhoH: PhoH-like prote 95.4 0.012 2.5E-07 51.7 2.7 23 246-268 21-43 (205)
416 cd03244 ABCC_MRP_domain2 Domai 95.4 0.0089 1.9E-07 52.3 2.0 23 246-268 32-54 (221)
417 cd03234 ABCG_White The White s 95.4 0.012 2.5E-07 51.9 2.8 25 245-269 34-58 (226)
418 cd03223 ABCD_peroxisomal_ALDP 95.4 0.013 2.7E-07 49.3 2.9 24 246-269 29-52 (166)
419 PRK07993 DNA polymerase III su 95.4 0.029 6.3E-07 52.8 5.6 28 243-270 23-50 (334)
420 PRK09435 membrane ATPase/prote 95.4 0.018 3.9E-07 54.2 4.1 32 246-277 58-92 (332)
421 cd03219 ABC_Mj1267_LivG_branch 95.4 0.011 2.4E-07 52.3 2.6 24 246-269 28-51 (236)
422 cd03235 ABC_Metallic_Cations A 95.3 0.0093 2E-07 51.9 2.0 24 246-269 27-50 (213)
423 cd03216 ABC_Carb_Monos_I This 95.3 0.012 2.7E-07 49.2 2.7 24 246-269 28-51 (163)
424 cd03293 ABC_NrtD_SsuB_transpor 95.3 0.012 2.5E-07 51.6 2.6 23 247-269 33-55 (220)
425 TIGR01448 recD_rel helicase, p 95.3 0.039 8.6E-07 57.2 6.8 33 245-277 339-376 (720)
426 cd03229 ABC_Class3 This class 95.3 0.012 2.5E-07 50.0 2.5 23 247-269 29-51 (178)
427 cd03297 ABC_ModC_molybdenum_tr 95.3 0.012 2.5E-07 51.4 2.5 25 245-269 24-48 (214)
428 cd03215 ABC_Carb_Monos_II This 95.3 0.013 2.8E-07 49.9 2.7 24 246-269 28-51 (182)
429 cd03296 ABC_CysA_sulfate_impor 95.3 0.013 2.8E-07 52.0 2.8 24 246-269 30-53 (239)
430 cd03263 ABC_subfamily_A The AB 95.3 0.013 2.8E-07 51.2 2.8 23 247-269 31-53 (220)
431 COG0396 sufC Cysteine desulfur 95.3 0.013 2.8E-07 52.2 2.7 37 236-272 20-58 (251)
432 PRK11629 lolD lipoprotein tran 95.3 0.013 2.8E-07 51.8 2.8 24 246-269 37-60 (233)
433 cd03266 ABC_NatA_sodium_export 95.3 0.013 2.8E-07 51.1 2.8 24 246-269 33-56 (218)
434 cd03278 ABC_SMC_barmotin Barmo 95.3 0.017 3.6E-07 50.2 3.4 23 247-269 25-47 (197)
435 COG0802 Predicted ATPase or ki 95.3 0.017 3.7E-07 48.0 3.2 26 245-270 26-51 (149)
436 cd03213 ABCG_EPDR ABCG transpo 95.3 0.013 2.8E-07 50.5 2.7 24 245-268 36-59 (194)
437 PRK14256 phosphate ABC transpo 95.3 0.015 3.3E-07 52.0 3.2 25 245-269 31-55 (252)
438 TIGR02323 CP_lyasePhnK phospho 95.3 0.013 2.8E-07 52.5 2.7 25 245-269 30-54 (253)
439 PRK14273 phosphate ABC transpo 95.2 0.011 2.3E-07 53.1 2.2 24 246-269 35-58 (254)
440 cd03265 ABC_DrrA DrrA is the A 95.2 0.014 3E-07 51.1 2.8 24 246-269 28-51 (220)
441 TIGR02239 recomb_RAD51 DNA rep 95.2 0.022 4.7E-07 53.3 4.3 40 240-279 92-140 (316)
442 PRK13540 cytochrome c biogenes 95.2 0.014 3.1E-07 50.4 2.8 24 246-269 29-52 (200)
443 PRK10895 lipopolysaccharide AB 95.2 0.013 2.9E-07 52.0 2.7 24 246-269 31-54 (241)
444 cd03218 ABC_YhbG The ABC trans 95.2 0.014 3E-07 51.4 2.8 24 246-269 28-51 (232)
445 cd03251 ABCC_MsbA MsbA is an e 95.2 0.015 3.2E-07 51.3 2.9 23 247-269 31-53 (234)
446 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.2 0.014 3.1E-07 51.6 2.9 23 246-268 31-53 (238)
447 cd01878 HflX HflX subfamily. 95.2 0.043 9.4E-07 47.1 5.8 23 245-267 42-64 (204)
448 PRK11248 tauB taurine transpor 95.2 0.014 3E-07 52.6 2.8 23 247-269 30-52 (255)
449 COG3854 SpoIIIAA ncharacterize 95.2 0.017 3.7E-07 51.7 3.2 25 246-270 139-163 (308)
450 PRK10584 putative ABC transpor 95.2 0.015 3.2E-07 51.2 2.9 24 246-269 38-61 (228)
451 PRK14262 phosphate ABC transpo 95.2 0.014 3E-07 52.2 2.7 24 246-269 31-54 (250)
452 cd03214 ABC_Iron-Siderophores_ 95.2 0.015 3.2E-07 49.4 2.8 24 246-269 27-50 (180)
453 cd03300 ABC_PotA_N PotA is an 95.2 0.011 2.4E-07 52.3 2.0 25 245-269 27-51 (232)
454 cd00267 ABC_ATPase ABC (ATP-bi 95.2 0.022 4.7E-07 47.1 3.7 26 245-270 26-51 (157)
455 cd03268 ABC_BcrA_bacitracin_re 95.2 0.014 3.1E-07 50.5 2.7 24 246-269 28-51 (208)
456 PF13481 AAA_25: AAA domain; P 95.2 0.025 5.4E-07 48.1 4.1 22 247-268 35-56 (193)
457 cd03230 ABC_DR_subfamily_A Thi 95.2 0.015 3.2E-07 49.1 2.7 24 246-269 28-51 (173)
458 TIGR03005 ectoine_ehuA ectoine 95.2 0.014 3E-07 52.2 2.7 24 246-269 28-51 (252)
459 TIGR00767 rho transcription te 95.2 0.017 3.6E-07 55.7 3.3 24 247-270 171-194 (415)
460 PRK11264 putative amino-acid A 95.2 0.015 3.3E-07 51.8 2.9 23 247-269 32-54 (250)
461 PRK14274 phosphate ABC transpo 95.2 0.018 4E-07 51.7 3.4 24 246-269 40-63 (259)
462 TIGR03864 PQQ_ABC_ATP ABC tran 95.2 0.015 3.2E-07 51.6 2.8 24 246-269 29-52 (236)
463 PF03193 DUF258: Protein of un 95.2 0.02 4.4E-07 48.3 3.4 28 245-272 36-63 (161)
464 PRK09302 circadian clock prote 95.1 0.033 7.2E-07 55.2 5.5 40 240-279 269-311 (509)
465 TIGR01277 thiQ thiamine ABC tr 95.1 0.015 3.2E-07 50.8 2.7 26 244-269 24-49 (213)
466 TIGR01978 sufC FeS assembly AT 95.1 0.014 3E-07 51.7 2.6 22 247-268 29-50 (243)
467 TIGR03819 heli_sec_ATPase heli 95.1 0.036 7.9E-07 52.3 5.4 26 244-269 178-203 (340)
468 cd03250 ABCC_MRP_domain1 Domai 95.1 0.016 3.5E-07 50.1 2.8 24 246-269 33-56 (204)
469 PF03308 ArgK: ArgK protein; 95.1 0.018 3.9E-07 52.2 3.2 38 247-284 32-74 (266)
470 cd03245 ABCC_bacteriocin_expor 95.1 0.016 3.4E-07 50.7 2.8 23 246-268 32-54 (220)
471 PRK10875 recD exonuclease V su 95.1 0.027 5.7E-07 57.3 4.8 23 246-268 169-191 (615)
472 TIGR03238 dnd_assoc_3 dnd syst 95.1 0.019 4.2E-07 56.3 3.6 40 217-262 9-50 (504)
473 PRK10771 thiQ thiamine transpo 95.1 0.015 3.3E-07 51.3 2.7 24 246-269 27-50 (232)
474 PRK13538 cytochrome c biogenes 95.1 0.016 3.4E-07 50.3 2.7 24 246-269 29-52 (204)
475 PRK06090 DNA polymerase III su 95.1 0.037 8E-07 51.8 5.4 28 243-270 24-51 (319)
476 cd03290 ABCC_SUR1_N The SUR do 95.1 0.017 3.6E-07 50.5 2.9 24 246-269 29-52 (218)
477 PRK14242 phosphate transporter 95.1 0.019 4.1E-07 51.4 3.3 24 246-269 34-57 (253)
478 PLN02348 phosphoribulokinase 95.1 0.028 6.1E-07 53.9 4.6 24 247-270 52-75 (395)
479 PRK13543 cytochrome c biogenes 95.1 0.014 3E-07 51.1 2.3 24 246-269 39-62 (214)
480 PRK11300 livG leucine/isoleuci 95.1 0.013 2.7E-07 52.5 2.1 24 246-269 33-56 (255)
481 TIGR00073 hypB hydrogenase acc 95.1 0.042 9.1E-07 47.8 5.4 26 244-269 22-47 (207)
482 cd03259 ABC_Carb_Solutes_like 95.1 0.017 3.6E-07 50.3 2.8 24 246-269 28-51 (213)
483 cd03248 ABCC_TAP TAP, the Tran 95.1 0.018 3.8E-07 50.6 3.0 24 246-269 42-65 (226)
484 PRK11247 ssuB aliphatic sulfon 95.1 0.016 3.5E-07 52.4 2.8 24 246-269 40-63 (257)
485 PRK14267 phosphate ABC transpo 95.1 0.017 3.7E-07 51.7 2.9 24 246-269 32-55 (253)
486 COG4136 ABC-type uncharacteriz 95.1 0.023 4.9E-07 47.8 3.4 25 247-271 31-55 (213)
487 PRK13547 hmuV hemin importer A 95.1 0.016 3.4E-07 52.9 2.7 24 246-269 29-52 (272)
488 PRK13539 cytochrome c biogenes 95.1 0.017 3.6E-07 50.3 2.8 24 246-269 30-53 (207)
489 cd03232 ABC_PDR_domain2 The pl 95.1 0.017 3.7E-07 49.7 2.8 22 246-267 35-56 (192)
490 PRK09493 glnQ glutamine ABC tr 95.1 0.017 3.6E-07 51.3 2.8 24 246-269 29-52 (240)
491 PRK11432 fbpC ferric transport 95.0 0.014 3.1E-07 55.3 2.5 25 246-270 34-58 (351)
492 cd03252 ABCC_Hemolysin The ABC 95.0 0.017 3.7E-07 51.1 2.8 23 247-269 31-53 (237)
493 TIGR03740 galliderm_ABC gallid 95.0 0.016 3.4E-07 50.9 2.5 24 246-269 28-51 (223)
494 cd03295 ABC_OpuCA_Osmoprotecti 95.0 0.017 3.7E-07 51.3 2.8 24 246-269 29-52 (242)
495 COG4240 Predicted kinase [Gene 95.0 0.057 1.2E-06 48.2 5.9 64 215-280 21-90 (300)
496 cd03253 ABCC_ATM1_transporter 95.0 0.018 3.9E-07 50.9 2.9 24 246-269 29-52 (236)
497 PRK14250 phosphate ABC transpo 95.0 0.017 3.8E-07 51.4 2.8 24 246-269 31-54 (241)
498 PRK10908 cell division protein 95.0 0.018 3.8E-07 50.5 2.8 24 246-269 30-53 (222)
499 PF05621 TniB: Bacterial TniB 95.0 0.072 1.6E-06 49.3 6.9 60 213-279 37-105 (302)
500 TIGR03411 urea_trans_UrtD urea 95.0 0.017 3.8E-07 51.2 2.7 24 246-269 30-53 (242)
No 1
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-65 Score=477.04 Aligned_cols=276 Identities=42% Similarity=0.698 Sum_probs=260.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhcCCCCCeEEEEecCCCCCcChHHHHHHHHhhhccCCCcCc
Q 045456 13 AFAASAMLVRTVINEVQTLTSQIIPKQLQTMMLSKLGGLFTNHSSQMTLIIDEYNGFSINQLYEASELYLSTKITASLEK 92 (288)
Q Consensus 13 ~~~~~~~S~~a~~~~~r~~~~~~~P~~l~~~~~~~~~~l~~~~~~~~ti~i~e~~~~~~N~ly~a~~~YL~~~~~~~~~r 92 (288)
++|+.+||.+|++|++|+|+++++|.+++.|+.+++++|++.++++.++.|.|++|+.+||+|.|+|+||++++++.++|
T Consensus 2 ~~~~~~~s~~~~~~~~~~~~~~~~p~~~~~y~~~~~~~l~g~~s~~~~~~~~e~~g~~~n~~~~aie~yl~~k~~~~~~r 81 (457)
T KOG0743|consen 2 SVFTAYASLLGSLMFIKSMLQDIIPPSINPYFISALRGLFGVFSSYALIRIGEQDGVFRNQLYVAIEVYLSSKSSAIAKR 81 (457)
T ss_pred CccchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhccCcccEEEEeehhccchHHHHHHHHHHhhhccchhhhhh
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCCCCceEEecCCCCeEEeccCCeeEEEEEeeeccccccc-cCCCcceEEEEEeccchhhHHHHhhhhHHHHHHH
Q 045456 93 LKVSKTTKEKNLSVTINKGEKISDIFEGICLVWEMTCKETEERSS-QRGKAERVIELSFPKKYMERILNIYLPYVMEKSN 171 (288)
Q Consensus 93 L~~~~~~~~~~~~l~~~~ge~v~D~F~Gv~~~W~~~~~~~~~~~~-~~~~~~r~~eL~f~~~~r~~vl~syl~~Il~~~~ 171 (288)
++.+.+.+++++++.++++++|.|+|+||+++|.+++..++.+.+ .+..+.|+|+|+|++++|+.|+++||+||.++++
T Consensus 82 l~~~~~~~s~~~~l~~~~~~~i~d~f~gv~~~w~~~~~~~~~~~~~~~~~~~r~~~L~f~k~~~e~V~~syl~~v~~~~k 161 (457)
T KOG0743|consen 82 LTQNLSKNSKSLVLGLDDNEEISDEFEGVPVKWRHFVDYNEKWIFVEREREKRYFELTFHKKPRELVTLSYLPYVVSKAK 161 (457)
T ss_pred hhhhhccccccceEEecCCcEEEEEEeceEEEEEEEEEecCcccccccCCcceEEEEEecCccHHHhHHhHHHHHHHHHH
Confidence 999999999999999999999999999999999999887666532 2356889999999999999999999999999999
Q ss_pred HHHhccceeEEEEecCCCCC-CCCCCCCCccCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEE
Q 045456 172 AIKEQNKVVKLYAVGHFGGD-SDRGGAWGSTNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLF 250 (288)
Q Consensus 172 ~i~~~~~~~kl~~~~~~~~~-~~~~~~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~ 250 (288)
+|.++++.++||++++.... ...++.|+++.+.||++|++|+++++.|++|.+|+..|++++++|++.|++|+||||||
T Consensus 162 ~I~~~~r~~kl~t~~~~~~~~~~~~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLY 241 (457)
T KOG0743|consen 162 EILEENRELKLYTNSGKTVIYTAKGGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLY 241 (457)
T ss_pred HHHHHHHHHHHhhcCCCcccccccCCcceecCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceee
Confidence 99999999999999864332 12578999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHhCCcEEEEecCCCCCcccccC
Q 045456 251 GPPGTGKSSLIAAMANYLKFNIYDMELTSVYCNSELRR 288 (288)
Q Consensus 251 GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~~ 288 (288)
|||||||||++.|||++|+++||+++++++.+++|||+
T Consensus 242 GPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~ 279 (457)
T KOG0743|consen 242 GPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRH 279 (457)
T ss_pred CCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHH
Confidence 99999999999999999999999999999999999985
No 2
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=99.97 E-value=2.2e-30 Score=201.20 Aligned_cols=97 Identities=39% Similarity=0.774 Sum_probs=93.7
Q ss_pred hchHHHHHHHHHHHhhhhc-CCCCCeEEEEecCCCCCcChHHHHHHHHhhhccCCCcCceEEeecCCCCceEEecCCCCe
Q 045456 35 IIPKQLQTMMLSKLGGLFT-NHSSQMTLIIDEYNGFSINQLYEASELYLSTKITASLEKLKVSKTTKEKNLSVTINKGEK 113 (288)
Q Consensus 35 ~~P~~l~~~~~~~~~~l~~-~~~~~~ti~i~e~~~~~~N~ly~a~~~YL~~~~~~~~~rL~~~~~~~~~~~~l~~~~ge~ 113 (288)
+||++||+++.+++++++. +++|++||+|+|++|+..|++|+|||+||+++++++++||++++++++++++++|++||+
T Consensus 1 ~~P~~lr~~~~~~~~~~~~~~~s~~~ti~I~E~~g~~~N~ly~a~~~YL~s~~s~~a~rL~~~~~~~~~~~~l~l~~~e~ 80 (98)
T PF14363_consen 1 LLPHELRSYLRSLLRRLFSSRFSPYLTIVIPEFDGLSRNELYDAAQAYLSSKISPSARRLKASKSKNSKNLVLSLDDGEE 80 (98)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCCcEEEEEEeCCCccccHHHHHHHHHHhhccCcccceeeecccCCCCceEEecCCCCE
Confidence 6899999999999988876 899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCeeEEEEEeeec
Q 045456 114 ISDIFEGICLVWEMTCKE 131 (288)
Q Consensus 114 v~D~F~Gv~~~W~~~~~~ 131 (288)
|+|+|+||++||.+++++
T Consensus 81 V~D~F~Gv~v~W~~~~~e 98 (98)
T PF14363_consen 81 VVDVFEGVKVWWSSVCTE 98 (98)
T ss_pred EEEEECCEEEEEEEEccC
Confidence 999999999999999864
No 3
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=5.5e-19 Score=162.78 Aligned_cols=82 Identities=23% Similarity=0.304 Sum_probs=76.9
Q ss_pred cCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCC
Q 045456 201 TNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSV 280 (288)
Q Consensus 201 ~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~ 280 (288)
+...+..||+||+|.++++++|++.++.++.+|++|+++|+.+|+|+|||||||||||.||+|+|++.++.|+.+.+|++
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 34555679999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CC
Q 045456 281 YC 282 (288)
Q Consensus 281 ~~ 282 (288)
..
T Consensus 222 Vq 223 (406)
T COG1222 222 VQ 223 (406)
T ss_pred HH
Confidence 54
No 4
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=5.9e-17 Score=158.78 Aligned_cols=81 Identities=25% Similarity=0.384 Sum_probs=76.9
Q ss_pred CCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCC
Q 045456 203 LDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYC 282 (288)
Q Consensus 203 ~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~ 282 (288)
..+..+|+||+|++++|+++.+.+.+++++++.|.++|+.+++|+|||||||||||++|+|+|++.+.+|+.|.++++.+
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~s 506 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFS 506 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHH
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred c
Q 045456 283 N 283 (288)
Q Consensus 283 ~ 283 (288)
+
T Consensus 507 k 507 (693)
T KOG0730|consen 507 K 507 (693)
T ss_pred H
Confidence 4
No 5
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.9e-16 Score=139.18 Aligned_cols=77 Identities=26% Similarity=0.375 Sum_probs=73.4
Q ss_pred CCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCC
Q 045456 205 HPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVY 281 (288)
Q Consensus 205 ~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~ 281 (288)
+..++.|++|.+-+|++|+++++.++.+.++|+++|+.++||+|||||||||||++++|+|++....|+.+.+++..
T Consensus 150 pdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 150 PDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 44699999999999999999999999999999999999999999999999999999999999999999999988764
No 6
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=5.7e-16 Score=150.66 Aligned_cols=76 Identities=25% Similarity=0.371 Sum_probs=72.0
Q ss_pred CCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCCc
Q 045456 207 ATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYCN 283 (288)
Q Consensus 207 ~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~ 283 (288)
.+|++|+|.+..-.++.+.+.. +.+++.|..+|+.++||+|||||||||||+||+|||++++.||+.|+++++.+.
T Consensus 187 v~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG 262 (802)
T KOG0733|consen 187 VSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG 262 (802)
T ss_pred cchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc
Confidence 4899999999999999998776 999999999999999999999999999999999999999999999999998764
No 7
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=5.3e-16 Score=150.84 Aligned_cols=84 Identities=24% Similarity=0.286 Sum_probs=78.4
Q ss_pred ccCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCC
Q 045456 200 STNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTS 279 (288)
Q Consensus 200 ~~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~ 279 (288)
.+...+..+|+||++.++++.++..++.+++++++.|+++|+..+.|+|||||||||||.||+|+|++.|.+|+.|.+++
T Consensus 501 GF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPE 580 (802)
T KOG0733|consen 501 GFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPE 580 (802)
T ss_pred cceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHH
Confidence 34455667999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCc
Q 045456 280 VYCN 283 (288)
Q Consensus 280 ~~~~ 283 (288)
+.++
T Consensus 581 LlNk 584 (802)
T KOG0733|consen 581 LLNK 584 (802)
T ss_pred HHHH
Confidence 8664
No 8
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=9.5e-16 Score=153.91 Aligned_cols=77 Identities=26% Similarity=0.440 Sum_probs=71.9
Q ss_pred CCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCC
Q 045456 204 DHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVY 281 (288)
Q Consensus 204 ~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~ 281 (288)
..+.+|+|++|.++.|++|.+.++ |+++|+.|.++|...|||+||+||||||||.||+|+|+|.|.||+.+++++..
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V~-fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFv 381 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFVK-FLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFV 381 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHHH-HhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHH
Confidence 345799999999999999999655 89999999999999999999999999999999999999999999999998764
No 9
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.53 E-value=9.6e-15 Score=139.76 Aligned_cols=78 Identities=26% Similarity=0.340 Sum_probs=73.3
Q ss_pred CCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCC
Q 045456 204 DHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVY 281 (288)
Q Consensus 204 ~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~ 281 (288)
.+..+|+||+|.+.+|++|.+.++.++.+++.|.++|+.+++|+|||||||||||++|+++|++++.+++.+..+++.
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 456799999999999999999999999999999999999999999999999999999999999999999999876553
No 10
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=3.4e-15 Score=134.72 Aligned_cols=82 Identities=22% Similarity=0.308 Sum_probs=76.3
Q ss_pred ccCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCC
Q 045456 200 STNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTS 279 (288)
Q Consensus 200 ~~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~ 279 (288)
.++..+..+|+|++|.+.+.++|.+.++.++.+|++|+++|+.+|+|++|||+||||||.||+|+||.....|+.+-+++
T Consensus 175 K~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGse 254 (440)
T KOG0726|consen 175 KVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSE 254 (440)
T ss_pred ecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHH
Confidence 35667778999999999999999999999999999999999999999999999999999999999999999998887776
Q ss_pred CC
Q 045456 280 VY 281 (288)
Q Consensus 280 ~~ 281 (288)
+.
T Consensus 255 Li 256 (440)
T KOG0726|consen 255 LI 256 (440)
T ss_pred HH
Confidence 54
No 11
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=6.8e-15 Score=146.24 Aligned_cols=79 Identities=24% Similarity=0.385 Sum_probs=72.0
Q ss_pred CCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCC
Q 045456 203 LDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYC 282 (288)
Q Consensus 203 ~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~ 282 (288)
+.+..+|+||+|.+++|++|++.+..++++++++.. |...+.|+|||||||||||.+|+|+|.++...|+.|.++++.+
T Consensus 665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLN 743 (953)
T KOG0736|consen 665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLN 743 (953)
T ss_pred CCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHH
Confidence 345579999999999999999999999999999965 6666789999999999999999999999999999999988754
No 12
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1e-14 Score=129.35 Aligned_cols=82 Identities=22% Similarity=0.315 Sum_probs=76.8
Q ss_pred cCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCC
Q 045456 201 TNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSV 280 (288)
Q Consensus 201 ~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~ 280 (288)
++..+..+++.++|.+.+.++|.+.++.+.++|++|+.+|++.|+|+|||||||||||.+|+|+|.+..+.|+.++++++
T Consensus 138 VeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgsel 217 (404)
T KOG0728|consen 138 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 217 (404)
T ss_pred hhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHH
Confidence 45566779999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 045456 281 YC 282 (288)
Q Consensus 281 ~~ 282 (288)
..
T Consensus 218 vq 219 (404)
T KOG0728|consen 218 VQ 219 (404)
T ss_pred HH
Confidence 53
No 13
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2.4e-14 Score=133.33 Aligned_cols=77 Identities=23% Similarity=0.424 Sum_probs=73.3
Q ss_pred CCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCCc
Q 045456 206 PATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYCN 283 (288)
Q Consensus 206 p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~ 283 (288)
...|+||+|..++|+-|.++|..++.-|++|+.+-.|| +|+||+||||||||+||+|+|.++|..|+.|+.+.+.++
T Consensus 208 ~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPW-kgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSK 284 (491)
T KOG0738|consen 208 NIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPW-KGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSK 284 (491)
T ss_pred CcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhccccc-ceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhh
Confidence 35899999999999999999999999999999988888 599999999999999999999999999999999999876
No 14
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.49 E-value=5.6e-14 Score=135.70 Aligned_cols=82 Identities=21% Similarity=0.296 Sum_probs=76.3
Q ss_pred cCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCC
Q 045456 201 TNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSV 280 (288)
Q Consensus 201 ~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~ 280 (288)
+...++.+|+||+|.++++++|.+.++.++.++++|..+|+.+++|+|||||||||||++|++||++++.+++.+..+++
T Consensus 174 ~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL 253 (438)
T PTZ00361 174 VDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSEL 253 (438)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchh
Confidence 44566789999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CC
Q 045456 281 YC 282 (288)
Q Consensus 281 ~~ 282 (288)
.+
T Consensus 254 ~~ 255 (438)
T PTZ00361 254 IQ 255 (438)
T ss_pred hh
Confidence 44
No 15
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=3.3e-14 Score=136.72 Aligned_cols=74 Identities=28% Similarity=0.414 Sum_probs=69.5
Q ss_pred CCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCC
Q 045456 207 ATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVY 281 (288)
Q Consensus 207 ~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~ 281 (288)
.+|+|+.|.++.|+++.+.++ |++.|+.|.++|-..|+|+||.||||||||.||+|+|++.|.||+..++++..
T Consensus 301 v~F~dVkG~DEAK~ELeEiVe-fLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFd 374 (752)
T KOG0734|consen 301 VTFEDVKGVDEAKQELEEIVE-FLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFD 374 (752)
T ss_pred cccccccChHHHHHHHHHHHH-HhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchh
Confidence 589999999999999988555 89999999999999999999999999999999999999999999999988753
No 16
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.48 E-value=6e-14 Score=134.11 Aligned_cols=80 Identities=23% Similarity=0.323 Sum_probs=74.6
Q ss_pred CCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCC
Q 045456 203 LDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYC 282 (288)
Q Consensus 203 ~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~ 282 (288)
..+..+|++|+|.++++++|.+.+..++.+++.|+.+|+.+++|+|||||||||||++|+++|++++.+++.++.+++..
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 34456999999999999999999999999999999999999999999999999999999999999999999999887643
No 17
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=5.1e-14 Score=125.90 Aligned_cols=82 Identities=18% Similarity=0.200 Sum_probs=76.4
Q ss_pred cCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCC
Q 045456 201 TNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSV 280 (288)
Q Consensus 201 ~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~ 280 (288)
++-.+..+++|++|..++.+.+++.++.++-+++.|-.+|+.+++|+|||||||||||.+|+|+||..+..|+.+-++++
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigsel 247 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL 247 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH
Confidence 45556679999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred CC
Q 045456 281 YC 282 (288)
Q Consensus 281 ~~ 282 (288)
..
T Consensus 248 vq 249 (435)
T KOG0729|consen 248 VQ 249 (435)
T ss_pred HH
Confidence 43
No 18
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.46 E-value=1e-13 Score=135.94 Aligned_cols=70 Identities=27% Similarity=0.333 Sum_probs=65.8
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
...++.+|++|+|.++++++|.+.++.++.++++|+++|+++++|+|||||||||||++|+++|++++.+
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 3445679999999999999999999999999999999999999999999999999999999999999876
No 19
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=4.6e-14 Score=125.85 Aligned_cols=79 Identities=18% Similarity=0.291 Sum_probs=72.3
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSV 280 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~ 280 (288)
.-.+..+++|++|.+.+.+++.+++..++.+++.|.++|+.+|+|+|+|||||||||.+|+|.|...+..|+.+.++.+
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQL 241 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQL 241 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHH
Confidence 3445569999999999999999999999999999999999999999999999999999999999999988887776654
No 20
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.9e-13 Score=126.83 Aligned_cols=77 Identities=26% Similarity=0.386 Sum_probs=70.7
Q ss_pred CCccccccChhhhHHHHHHHHHHhhcHHHHHHhCC-cccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCCc
Q 045456 207 ATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGK-VWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYCN 283 (288)
Q Consensus 207 ~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~-~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~ 283 (288)
.+|+||+|.+++++.+.+.+..++.++++|...+. .+++|+|||||||||||++|+|+|++.|.+++.|..+.++++
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~K 166 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSK 166 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchh
Confidence 48999999999999999999999999999974333 357999999999999999999999999999999999999875
No 21
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.40 E-value=5.8e-13 Score=130.38 Aligned_cols=74 Identities=24% Similarity=0.276 Sum_probs=64.3
Q ss_pred CCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCC
Q 045456 206 PATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYC 282 (288)
Q Consensus 206 p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~ 282 (288)
+.+|++|+|.+.+|+.+.+....|.. ...++|++.++|+|||||||||||++|+++|++++.|++.++.+++.+
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~~~~~---~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~ 297 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRSTSFSK---QASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFG 297 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHhhH---HHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcc
Confidence 45899999999999999876665533 346679999999999999999999999999999999999999877654
No 22
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.8e-13 Score=124.01 Aligned_cols=76 Identities=28% Similarity=0.440 Sum_probs=70.9
Q ss_pred CCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCCc
Q 045456 207 ATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYCN 283 (288)
Q Consensus 207 ~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~ 283 (288)
..|+|++|.+..|+.+.+++..+++-|+++..-..|| +|+|||||||||||.||+|+|.+.+-.|+.|+.+++.++
T Consensus 130 VkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~Pw-rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSK 205 (439)
T KOG0739|consen 130 VKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPW-RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 205 (439)
T ss_pred CchhhhccchhHHHHHHhheeecccchhhhcCCCCcc-eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHH
Confidence 4789999999999999999999999999998766676 699999999999999999999999999999999988775
No 23
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=6.3e-13 Score=130.71 Aligned_cols=80 Identities=28% Similarity=0.436 Sum_probs=75.6
Q ss_pred CCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCCc
Q 045456 204 DHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYCN 283 (288)
Q Consensus 204 ~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~ 283 (288)
.+..+|++++|.++.|+.+.+.++.++.+++.|.+.|+..++|+|||||||||||++|+|+|++++.+|+.++.+++.++
T Consensus 236 ~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk 315 (494)
T COG0464 236 DEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK 315 (494)
T ss_pred CCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcc
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999988775
No 24
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.38 E-value=5.4e-13 Score=126.40 Aligned_cols=79 Identities=22% Similarity=0.326 Sum_probs=72.9
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSV 280 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~ 280 (288)
...+..+|++++|.++++++|.+.+..++.+++.+..+|+.+++|+|||||||||||++|+++|++++.+++.+..+++
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l 192 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 192 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHH
Confidence 3445679999999999999999999999999999999999999999999999999999999999999999999876654
No 25
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.37 E-value=5.8e-13 Score=118.74 Aligned_cols=75 Identities=21% Similarity=0.320 Sum_probs=64.4
Q ss_pred CCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCC
Q 045456 204 DHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYC 282 (288)
Q Consensus 204 ~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~ 282 (288)
....+|||++|+++.|+...- +..|+.+|+.+. .-.|+.+|||||||||||++|+|+|++.+.|++.+.++++..
T Consensus 115 ~~~it~ddViGqEeAK~kcrl-i~~yLenPe~Fg---~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRL-IMEYLENPERFG---DWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred hccccHhhhhchHHHHHHHHH-HHHHhhChHHhc---ccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 345699999999999987654 566888998874 446899999999999999999999999999999999887654
No 26
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.37 E-value=7.3e-13 Score=136.08 Aligned_cols=79 Identities=25% Similarity=0.370 Sum_probs=74.4
Q ss_pred CCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCCc
Q 045456 205 HPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYCN 283 (288)
Q Consensus 205 ~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~ 283 (288)
+..+|++++|.+++|+.|.+.+..++.+++.+.++|+.+++|+|||||||||||++|+++|++++.+++.++.+++.++
T Consensus 448 ~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred cccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 3468999999999999999999999999999999999999999999999999999999999999999999999877554
No 27
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.36 E-value=8.9e-13 Score=129.79 Aligned_cols=77 Identities=27% Similarity=0.450 Sum_probs=70.2
Q ss_pred CCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCC
Q 045456 204 DHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVY 281 (288)
Q Consensus 204 ~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~ 281 (288)
.+..+|+|++|.+++|+++.+.+. ++.+++.|.+.|...++|+|||||||||||++|+++|++++.|++.++.+++.
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~-~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVD-FLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHH-HHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 456799999999999999998666 58899999999999999999999999999999999999999999999887653
No 28
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.32 E-value=3.3e-12 Score=112.46 Aligned_cols=76 Identities=25% Similarity=0.287 Sum_probs=53.3
Q ss_pred CCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCC
Q 045456 203 LDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYC 282 (288)
Q Consensus 203 ~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~ 282 (288)
.-+|.+|+|++|++++++.+.-.++....+ + .....+||||||||||||+|..||++++.++..++++.+..
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r-------~-~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k 88 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAKKR-------G-EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK 88 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHHCT-------T-S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHHhc-------C-CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh
Confidence 467999999999999988765544433221 1 12347999999999999999999999999999999988776
Q ss_pred cccc
Q 045456 283 NSEL 286 (288)
Q Consensus 283 ~~~l 286 (288)
..||
T Consensus 89 ~~dl 92 (233)
T PF05496_consen 89 AGDL 92 (233)
T ss_dssp CHHH
T ss_pred HHHH
Confidence 6665
No 29
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.1e-12 Score=119.30 Aligned_cols=76 Identities=24% Similarity=0.365 Sum_probs=74.1
Q ss_pred CccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCCc
Q 045456 208 TFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYCN 283 (288)
Q Consensus 208 ~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~ 283 (288)
+|++++|.-.+..++.+.++.++.+++++.++|+.+|+|++||||||||||.+|+++|..+|.+++.+..+++.++
T Consensus 130 s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k 205 (388)
T KOG0651|consen 130 SFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDK 205 (388)
T ss_pred CHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhh
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998876
No 30
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=2.1e-12 Score=127.72 Aligned_cols=76 Identities=29% Similarity=0.435 Sum_probs=70.9
Q ss_pred CCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCC
Q 045456 205 HPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVY 281 (288)
Q Consensus 205 ~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~ 281 (288)
...+|.|++|.++.|+++.+.++ |++.++.|.++|.-.|+|+||+||||||||++|+|+|++.+.|++.+++++..
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVd-fLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FV 220 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVD-FLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 220 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHH-HHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhh
Confidence 45699999999999999999555 89999999999999999999999999999999999999999999999998754
No 31
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.30 E-value=3.9e-12 Score=130.72 Aligned_cols=79 Identities=24% Similarity=0.362 Sum_probs=73.8
Q ss_pred CCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCCc
Q 045456 205 HPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYCN 283 (288)
Q Consensus 205 ~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~ 283 (288)
+..+|++|+|.+++++.|.+.+..++.+++.|+.+|+.+++|+|||||||||||+++++||++++.+++.++.+++.++
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999998776543
No 32
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=3.2e-12 Score=126.51 Aligned_cols=77 Identities=19% Similarity=0.308 Sum_probs=73.7
Q ss_pred CCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCCc
Q 045456 207 ATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYCN 283 (288)
Q Consensus 207 ~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~ 283 (288)
..|+|++|..++|+.+.+.++++.+.+.+|.+.++..+.|+|||||||||||.+|.|+|..++..|+.+.++++.++
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~K 740 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSK 740 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999987664
No 33
>CHL00176 ftsH cell division protein; Validated
Probab=99.23 E-value=1.3e-11 Score=124.45 Aligned_cols=77 Identities=30% Similarity=0.438 Sum_probs=69.4
Q ss_pred CCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCC
Q 045456 204 DHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVY 281 (288)
Q Consensus 204 ~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~ 281 (288)
....+|+|++|.+++|+++.+.+ .+++.++.|..+|...++|+||+||||||||++|+++|++++.|++.++++++.
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv-~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~ 253 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVV-SFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFV 253 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHH-HHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHH
Confidence 34569999999999999997755 568899999999999999999999999999999999999999999999887654
No 34
>PRK04195 replication factor C large subunit; Provisional
Probab=99.15 E-value=4.7e-11 Score=117.23 Aligned_cols=78 Identities=27% Similarity=0.531 Sum_probs=67.1
Q ss_pred CCCccCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEe
Q 045456 197 AWGSTNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDME 276 (288)
Q Consensus 197 ~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (288)
.| +++++|.++++|+|++++++.+.+.+..+.. |.+ ++.+||+||||||||++|+++|++++++++.++
T Consensus 3 ~W--~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~-~~~lLL~GppG~GKTtla~ala~el~~~~ieln 71 (482)
T PRK04195 3 PW--VEKYRPKTLSDVVGNEKAKEQLREWIESWLK--------GKP-KKALLLYGPPGVGKTSLAHALANDYGWEVIELN 71 (482)
T ss_pred Cc--hhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCC-CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEc
Confidence 47 5799999999999999999999988876552 322 678999999999999999999999999999999
Q ss_pred cCCCCCccc
Q 045456 277 LTSVYCNSE 285 (288)
Q Consensus 277 ~~~~~~~~~ 285 (288)
+++..+...
T Consensus 72 asd~r~~~~ 80 (482)
T PRK04195 72 ASDQRTADV 80 (482)
T ss_pred ccccccHHH
Confidence 988765543
No 35
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.1e-10 Score=111.34 Aligned_cols=79 Identities=28% Similarity=0.360 Sum_probs=72.4
Q ss_pred CCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCCc
Q 045456 204 DHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYCN 283 (288)
Q Consensus 204 ~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~ 283 (288)
.++..|+|++|.+.+|+.+.+.+.+++.+++.+..+. ++.+|+||+||||||||++++|||.|++..|+.++++++.++
T Consensus 147 ~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK 225 (428)
T KOG0740|consen 147 LRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSK 225 (428)
T ss_pred CCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhh
Confidence 4457899999999999999999999999999998765 456899999999999999999999999999999999999876
No 36
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.05 E-value=2.6e-10 Score=107.06 Aligned_cols=78 Identities=13% Similarity=0.054 Sum_probs=55.8
Q ss_pred CCCCCcccccc-ChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCC
Q 045456 204 DHPATFDKIAM-DPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYC 282 (288)
Q Consensus 204 ~~p~~~~~l~~-~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~ 282 (288)
.+..+|+++.+ .--.+..+.+ +...+. +++....|+.+++|++||||||||||++|+|+|+++|.+++.++++++.+
T Consensus 109 ~~~~~f~~~~g~~~~~p~f~dk-~~~hi~-kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~s 186 (413)
T PLN00020 109 QRTRSFDNLVGGYYIAPAFMDK-VAVHIA-KNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELES 186 (413)
T ss_pred hhhcchhhhcCccccCHHHHHH-HHHHHH-hhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhc
Confidence 34457777733 3322322222 221121 23344478899999999999999999999999999999999999999886
Q ss_pred c
Q 045456 283 N 283 (288)
Q Consensus 283 ~ 283 (288)
+
T Consensus 187 k 187 (413)
T PLN00020 187 E 187 (413)
T ss_pred C
Confidence 5
No 37
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.01 E-value=4.6e-10 Score=101.43 Aligned_cols=76 Identities=28% Similarity=0.280 Sum_probs=61.6
Q ss_pred CCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCC
Q 045456 203 LDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYC 282 (288)
Q Consensus 203 ~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~ 282 (288)
.-+|.+|++.+|++++|+.+.-.++.-..+ ......+|||||||.||||||..||+++|.++-..+++.+..
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r--------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK 90 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKR--------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK 90 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHhc--------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC
Confidence 346899999999999888776655443222 233567999999999999999999999999999999988877
Q ss_pred cccc
Q 045456 283 NSEL 286 (288)
Q Consensus 283 ~~~l 286 (288)
..||
T Consensus 91 ~gDl 94 (332)
T COG2255 91 PGDL 94 (332)
T ss_pred hhhH
Confidence 7665
No 38
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.96 E-value=6.2e-10 Score=101.46 Aligned_cols=69 Identities=32% Similarity=0.455 Sum_probs=54.2
Q ss_pred cCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC------cEEE
Q 045456 201 TNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF------NIYD 274 (288)
Q Consensus 201 ~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------~i~~ 274 (288)
+++++|.+|+++++++.+.+.+...+.. ..-..|||||||||||||.|.|.|.++.. -+..
T Consensus 27 teKYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ 93 (346)
T KOG0989|consen 27 TEKYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLE 93 (346)
T ss_pred HHHhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhh
Confidence 4699999999999999998888876663 11236999999999999999999999976 2444
Q ss_pred EecCCCCC
Q 045456 275 MELTSVYC 282 (288)
Q Consensus 275 l~~~~~~~ 282 (288)
+++++-..
T Consensus 94 lnaSderG 101 (346)
T KOG0989|consen 94 LNASDERG 101 (346)
T ss_pred hccccccc
Confidence 55554433
No 39
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.95 E-value=8.1e-10 Score=108.07 Aligned_cols=57 Identities=26% Similarity=0.483 Sum_probs=46.8
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
..++|.+|++++|++++++.|...+.. | ..+.++||+||||||||++|+++|+.++.
T Consensus 6 ~kyRP~~~~divGq~~i~~~L~~~i~~-----------~-~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVKKLIINALKK-----------N-SISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 478999999999999887776654442 1 23567999999999999999999999876
No 40
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=8.6e-10 Score=114.33 Aligned_cols=80 Identities=20% Similarity=0.268 Sum_probs=69.4
Q ss_pred CCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhC-----CcEEEEecC
Q 045456 204 DHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK-----FNIYDMELT 278 (288)
Q Consensus 204 ~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~-----~~i~~l~~~ 278 (288)
..-.+|++++|.+..+..+++.+..++-.++.|..+++.++||+|||||||||||++|+|+|..+. ..++.-++.
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 344689999999999999999999999999999999999999999999999999999999999883 345555555
Q ss_pred CCCCc
Q 045456 279 SVYCN 283 (288)
Q Consensus 279 ~~~~~ 283 (288)
+..++
T Consensus 339 D~lsk 343 (1080)
T KOG0732|consen 339 DCLSK 343 (1080)
T ss_pred hhhcc
Confidence 55444
No 41
>PLN03025 replication factor C subunit; Provisional
Probab=98.93 E-value=1.2e-09 Score=101.80 Aligned_cols=70 Identities=23% Similarity=0.278 Sum_probs=53.2
Q ss_pred cCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhC-----CcEEEE
Q 045456 201 TNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK-----FNIYDM 275 (288)
Q Consensus 201 ~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~-----~~i~~l 275 (288)
+++++|.+|++++|++++.+.|...+. . +. ...+|||||||||||++|.++|+++. ..++.+
T Consensus 4 ~~kyrP~~l~~~~g~~~~~~~L~~~~~----~-------~~--~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~el 70 (319)
T PLN03025 4 VEKYRPTKLDDIVGNEDAVSRLQVIAR----D-------GN--MPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLEL 70 (319)
T ss_pred hhhcCCCCHHHhcCcHHHHHHHHHHHh----c-------CC--CceEEEECCCCCCHHHHHHHHHHHHhcccCccceeee
Confidence 468999999999999988777655333 1 21 12599999999999999999999982 346777
Q ss_pred ecCCCCCc
Q 045456 276 ELTSVYCN 283 (288)
Q Consensus 276 ~~~~~~~~ 283 (288)
+.++..+.
T Consensus 71 n~sd~~~~ 78 (319)
T PLN03025 71 NASDDRGI 78 (319)
T ss_pred cccccccH
Confidence 77665443
No 42
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=8.3e-10 Score=109.06 Aligned_cols=78 Identities=23% Similarity=0.340 Sum_probs=73.0
Q ss_pred CCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCCc
Q 045456 205 HPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYCN 283 (288)
Q Consensus 205 ~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~ 283 (288)
++.+ +++++...+-..+.+.++.++.++..+...|+.+++|+|+|||||||||.+++|+|++.+..++.++++++.++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k 257 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISK 257 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHh
Confidence 5667 89999999999999999999999999999999999999999999999999999999999999999999887654
No 43
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.91 E-value=2.8e-09 Score=99.69 Aligned_cols=76 Identities=25% Similarity=0.297 Sum_probs=60.2
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVY 281 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~ 281 (288)
...+|.+|++++|.++.++.+...+...... + ...++++|+||||||||++|+++|++++.++..++.+.+.
T Consensus 17 ~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~-~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~ 88 (328)
T PRK00080 17 RSLRPKSLDEFIGQEKVKENLKIFIEAAKKR-------G-EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE 88 (328)
T ss_pred hhcCcCCHHHhcCcHHHHHHHHHHHHHHHhc-------C-CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc
Confidence 3567899999999999999887766543221 1 3356899999999999999999999999999888877655
Q ss_pred Cccc
Q 045456 282 CNSE 285 (288)
Q Consensus 282 ~~~~ 285 (288)
...+
T Consensus 89 ~~~~ 92 (328)
T PRK00080 89 KPGD 92 (328)
T ss_pred ChHH
Confidence 4443
No 44
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=1.9e-09 Score=108.03 Aligned_cols=57 Identities=25% Similarity=0.462 Sum_probs=48.3
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
.+++|.+|++|+|++.+++.|...+.. | ..+..|||+||||||||++|+++|+.+++
T Consensus 7 rKyRPktFddVIGQe~vv~~L~~aI~~-----------g-rl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 7 RKYRPRNFNELVGQNHVSRALSSALER-----------G-RLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467899999999999998888776551 2 23568999999999999999999999976
No 45
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.88 E-value=3.6e-09 Score=97.97 Aligned_cols=70 Identities=20% Similarity=0.289 Sum_probs=58.8
Q ss_pred CCCCccCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEE
Q 045456 196 GAWGSTNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDM 275 (288)
Q Consensus 196 ~~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (288)
..| +++++|.+|++++++++.++.+...+.. |. .+..+||+||||+|||++++++|++++.+++.+
T Consensus 9 ~~w--~~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~~-~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i 74 (316)
T PHA02544 9 FMW--EQKYRPSTIDECILPAADKETFKSIVKK-----------GR-IPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFV 74 (316)
T ss_pred Ccc--eeccCCCcHHHhcCcHHHHHHHHHHHhc-----------CC-CCeEEEeeCcCCCCHHHHHHHHHHHhCccceEe
Confidence 468 4799999999999999998887775541 22 345677799999999999999999999999999
Q ss_pred ecCC
Q 045456 276 ELTS 279 (288)
Q Consensus 276 ~~~~ 279 (288)
+.++
T Consensus 75 ~~~~ 78 (316)
T PHA02544 75 NGSD 78 (316)
T ss_pred ccCc
Confidence 9876
No 46
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.85 E-value=3.4e-09 Score=104.63 Aligned_cols=57 Identities=23% Similarity=0.390 Sum_probs=48.3
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
.+++|.+|++|+|++.+++.|...+.. + ..+..|||+||||||||++|+++|+.+++
T Consensus 8 ~kyRP~~f~divGq~~v~~~L~~~~~~-----------~-~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 8 RKWRPRCFQEVIGQAPVVRALSNALDQ-----------Q-YLHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred HHHCCCCHHHhcCCHHHHHHHHHHHHh-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 578899999999999998888776642 1 23557999999999999999999999976
No 47
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.84 E-value=4.5e-09 Score=102.93 Aligned_cols=74 Identities=14% Similarity=0.249 Sum_probs=57.5
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhC------------
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK------------ 269 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~------------ 269 (288)
.+++|.+|++|+|++.+++.+...+.. | ..+.++||+||||+|||++|+++|+.++
T Consensus 5 ~KyRP~~f~dliGQe~vv~~L~~a~~~-----------~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~ 72 (491)
T PRK14964 5 LKYRPSSFKDLVGQDVLVRILRNAFTL-----------N-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGT 72 (491)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccc
Confidence 367899999999999888877654431 2 2467899999999999999999999763
Q ss_pred ------------CcEEEEecCCCCCccccc
Q 045456 270 ------------FNIYDMELTSVYCNSELR 287 (288)
Q Consensus 270 ------------~~i~~l~~~~~~~~~~l~ 287 (288)
.+++.+++++-.+..++|
T Consensus 73 C~~C~~i~~~~~~Dv~eidaas~~~vddIR 102 (491)
T PRK14964 73 CHNCISIKNSNHPDVIEIDAASNTSVDDIK 102 (491)
T ss_pred cHHHHHHhccCCCCEEEEecccCCCHHHHH
Confidence 467888887666555554
No 48
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.84 E-value=4.9e-09 Score=94.95 Aligned_cols=73 Identities=14% Similarity=0.174 Sum_probs=53.2
Q ss_pred CccccccChhhhHHHHHHHHHHhhcHHHHHHhCCccc---ceeEEEcCCCCChHHHHHHHHHHhC-------CcEEEEec
Q 045456 208 TFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWK---RGYLLFGPPGTGKSSLIAAMANYLK-------FNIYDMEL 277 (288)
Q Consensus 208 ~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~---rg~LL~GPpGtGKTsla~aiA~~l~-------~~i~~l~~ 277 (288)
.+++++|.+++|+.|.+.+...... ....+.|.... .+++|+||||||||++|+++|+.+. .+++.++.
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~ 82 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER 82 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH
Confidence 3678999999999999877655433 44445566543 3589999999999999999998752 25666665
Q ss_pred CCCC
Q 045456 278 TSVY 281 (288)
Q Consensus 278 ~~~~ 281 (288)
+++.
T Consensus 83 ~~l~ 86 (261)
T TIGR02881 83 ADLV 86 (261)
T ss_pred HHhh
Confidence 5443
No 49
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.84 E-value=4.3e-09 Score=106.79 Aligned_cols=76 Identities=24% Similarity=0.441 Sum_probs=67.6
Q ss_pred CCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCC
Q 045456 205 HPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVY 281 (288)
Q Consensus 205 ~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~ 281 (288)
...+|+++.+.+..++++.+.+. ++..++.+...|...++|+||+||||||||++++++|++++.|++.++++++.
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~-~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~ 222 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 222 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHH-HhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhH
Confidence 45689999999999999988665 46778888888989999999999999999999999999999999999987654
No 50
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.83 E-value=6.1e-09 Score=95.96 Aligned_cols=68 Identities=21% Similarity=0.217 Sum_probs=53.6
Q ss_pred CccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCCc
Q 045456 208 TFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYCN 283 (288)
Q Consensus 208 ~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~ 283 (288)
+|++++|.++.++.+...+...... .....+++|+||||||||++|+++|++++.++..+..+.....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~ 69 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKP 69 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCc
Confidence 7899999999999887766543322 1224579999999999999999999999999888776654433
No 51
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.82 E-value=2.4e-09 Score=100.82 Aligned_cols=64 Identities=20% Similarity=0.371 Sum_probs=49.6
Q ss_pred CCCCCCccccccChhhhHH---HHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCC
Q 045456 203 LDHPATFDKIAMDPSMKQA---SIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTS 279 (288)
Q Consensus 203 ~~~p~~~~~l~~~~~~k~~---i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~ 279 (288)
.-+|.++++++|++++... |.+.++. | --..++|||||||||||+|++||+..+.+|..+++..
T Consensus 17 rmRP~~lde~vGQ~HLlg~~~~lrr~v~~-----------~--~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~ 83 (436)
T COG2256 17 RLRPKSLDEVVGQEHLLGEGKPLRRAVEA-----------G--HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT 83 (436)
T ss_pred HhCCCCHHHhcChHhhhCCCchHHHHHhc-----------C--CCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc
Confidence 4579999999999876432 3332221 1 1236999999999999999999999999999998753
No 52
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.82 E-value=3.7e-09 Score=102.86 Aligned_cols=58 Identities=26% Similarity=0.454 Sum_probs=48.0
Q ss_pred cCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 201 TNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 201 ~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
..+++|.+|++++|++.+.+.|...+.. |. .+..+||+||||||||++|+++|+.+++
T Consensus 9 ~~KyRP~~f~dvVGQe~iv~~L~~~i~~-----------~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 9 SRKYRPQFFRDVIHQDLAIGALQNALKS-----------GK-IGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred HHHhCCCCHHHHhChHHHHHHHHHHHHc-----------CC-CCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 3578999999999999888877665542 22 3456999999999999999999999986
No 53
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.81 E-value=2.5e-09 Score=115.82 Aligned_cols=52 Identities=27% Similarity=0.324 Sum_probs=47.2
Q ss_pred cHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCCc
Q 045456 232 RRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYCN 283 (288)
Q Consensus 232 ~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~ 283 (288)
.+....++|..+++|+||+||||||||.+|+|+|+++++|++.|+++++.++
T Consensus 1618 ~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~ 1669 (2281)
T CHL00206 1618 GKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDN 1669 (2281)
T ss_pred CcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhc
Confidence 3456678899999999999999999999999999999999999999988753
No 54
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.80 E-value=6.4e-09 Score=95.57 Aligned_cols=70 Identities=17% Similarity=0.178 Sum_probs=56.3
Q ss_pred ccccChhhhHHHHHHHHHHhhcHHHHHHhCCcc---cceeEEEcCCCCChHHHHHHHHHHhC-------CcEEEEecCCC
Q 045456 211 KIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVW---KRGYLLFGPPGTGKSSLIAAMANYLK-------FNIYDMELTSV 280 (288)
Q Consensus 211 ~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~---~rg~LL~GPpGtGKTsla~aiA~~l~-------~~i~~l~~~~~ 280 (288)
+++|.+++|++|.+.+.. +..++...+.|+.. ..+++|+||||||||++|+++|+.+. -+++.++.+++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999886665 66667777888864 34799999999999999999998873 26888876554
Q ss_pred C
Q 045456 281 Y 281 (288)
Q Consensus 281 ~ 281 (288)
.
T Consensus 102 ~ 102 (284)
T TIGR02880 102 V 102 (284)
T ss_pred h
Confidence 3
No 55
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=7.3e-09 Score=99.45 Aligned_cols=57 Identities=21% Similarity=0.369 Sum_probs=47.9
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
..++|.+|++|+|++.+++.|...+.. | ..+..+||+||||||||++|+++|+.+.+
T Consensus 8 ~k~RP~~~~eiiGq~~~~~~L~~~~~~-----------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 8 RKYRPKKFADITAQEHITRTIQNSLRM-----------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred HhcCCCcHhhccChHHHHHHHHHHHHh-----------C-CcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 467899999999999998877665542 2 24567999999999999999999999976
No 56
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.79 E-value=8e-09 Score=98.04 Aligned_cols=57 Identities=25% Similarity=0.338 Sum_probs=47.0
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
.+++|.+|++++|+++.++.+...+.. | ..+..+||+||||||||++|+++|+.+++
T Consensus 8 ~kyrP~~~~~iiGq~~~~~~l~~~~~~-----------~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 8 RKWRPQYFRDIIGQKHIVTAISNGLSL-----------G-RIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred HHhCCCchhhccChHHHHHHHHHHHHc-----------C-CCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 467899999999999988877665541 2 23567999999999999999999999864
No 57
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.79 E-value=1.1e-08 Score=102.18 Aligned_cols=89 Identities=18% Similarity=0.357 Sum_probs=72.2
Q ss_pred CCCccCCCCCCCccccccChhhhHHHHHHHHHHhh---c--------------HHHHH----HhCCcccceeEEEcCCCC
Q 045456 197 AWGSTNLDHPATFDKIAMDPSMKQASIDDLDRFVK---R--------------RNFYR----RVGKVWKRGYLLFGPPGT 255 (288)
Q Consensus 197 ~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~---~--------------~~~~~----~~g~~~~rg~LL~GPpGt 255 (288)
.| |+.+.|..|.||.+++.+.+.+..+|+.|-. + .+.+. ..+.|.++-+||+||||-
T Consensus 260 LW--Vdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGl 337 (877)
T KOG1969|consen 260 LW--VDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGL 337 (877)
T ss_pred ee--ecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCC
Confidence 68 7899999999999999999999998876521 1 11121 234455666899999999
Q ss_pred ChHHHHHHHHHHhCCcEEEEecCCCCCccccc
Q 045456 256 GKSSLIAAMANYLKFNIYDMELTSVYCNSELR 287 (288)
Q Consensus 256 GKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~ 287 (288)
||||||..||++.|+.+++|++++-++...++
T Consensus 338 GKTTLAHViAkqaGYsVvEINASDeRt~~~v~ 369 (877)
T KOG1969|consen 338 GKTTLAHVIAKQAGYSVVEINASDERTAPMVK 369 (877)
T ss_pred ChhHHHHHHHHhcCceEEEecccccccHHHHH
Confidence 99999999999999999999999988776554
No 58
>CHL00181 cbbX CbbX; Provisional
Probab=98.79 E-value=6.6e-09 Score=95.62 Aligned_cols=70 Identities=17% Similarity=0.232 Sum_probs=54.7
Q ss_pred cccccChhhhHHHHHHHHHHhhcHHHHHHhCCccc-ce--eEEEcCCCCChHHHHHHHHHHhC-------CcEEEEecCC
Q 045456 210 DKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWK-RG--YLLFGPPGTGKSSLIAAMANYLK-------FNIYDMELTS 279 (288)
Q Consensus 210 ~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~-rg--~LL~GPpGtGKTsla~aiA~~l~-------~~i~~l~~~~ 279 (288)
++++|.+++|++|.+.+.. +...+...+.|...+ .| +||+||||||||++|+++|+.+. -+++.++.++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 4799999999999987654 445566777887654 34 89999999999999999999862 2577777554
Q ss_pred C
Q 045456 280 V 280 (288)
Q Consensus 280 ~ 280 (288)
+
T Consensus 102 l 102 (287)
T CHL00181 102 L 102 (287)
T ss_pred H
Confidence 4
No 59
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=7.3e-09 Score=103.69 Aligned_cols=57 Identities=23% Similarity=0.355 Sum_probs=48.4
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
.+++|.+|++|+|++++++.|.+.+.. | ..+..+||+||+|||||++|+++|+.+++
T Consensus 8 rKYRPqtFddVIGQe~vv~~L~~al~~-----------g-RLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 8 RKWRPRDFTTLVGQEHVVRALTHALEQ-----------Q-RLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHHh-----------C-CCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 478999999999999999888776552 1 23567999999999999999999999986
No 60
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.78 E-value=9.8e-09 Score=101.16 Aligned_cols=57 Identities=19% Similarity=0.273 Sum_probs=47.3
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
..++|.+|++++|++.+.+.+...+.. | ..+.++||+||||||||++|+++|+.+++
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~ai~~-----------~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYTILN-----------D-RLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 478999999999999888876664432 2 23568999999999999999999999975
No 61
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.78 E-value=1.6e-08 Score=99.94 Aligned_cols=74 Identities=26% Similarity=0.406 Sum_probs=60.1
Q ss_pred CCCCCCccCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEE
Q 045456 194 RGGAWGSTNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIY 273 (288)
Q Consensus 194 ~~~~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~ 273 (288)
+...| ++.+.|.+.++|+......+++..+++..+. +....+-+||+||||||||++++++|+++|..+.
T Consensus 5 ~~~~W--~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~ 74 (519)
T PF03215_consen 5 ESEPW--VEKYAPKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQ 74 (519)
T ss_pred ccCcc--chhcCCCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence 45679 6799999999999998888888887775432 3334455778999999999999999999999998
Q ss_pred EEec
Q 045456 274 DMEL 277 (288)
Q Consensus 274 ~l~~ 277 (288)
...-
T Consensus 75 Ew~n 78 (519)
T PF03215_consen 75 EWIN 78 (519)
T ss_pred EecC
Confidence 8643
No 62
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=9.8e-09 Score=96.89 Aligned_cols=122 Identities=17% Similarity=0.158 Sum_probs=79.7
Q ss_pred chhhHHHHhhhhHHHHHHHHHHhccceeEEEEecCCC-CCCCCCCCCCccCCCCCCCccccccChhhhHHHHHHHHHHhh
Q 045456 153 KYMERILNIYLPYVMEKSNAIKEQNKVVKLYAVGHFG-GDSDRGGAWGSTNLDHPATFDKIAMDPSMKQASIDDLDRFVK 231 (288)
Q Consensus 153 ~~r~~vl~syl~~Il~~~~~i~~~~~~~kl~~~~~~~-~~~~~~~~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~ 231 (288)
+.-.+|..+|+..++....-|++..+...=.+..-+. -+.-.+ -..........|+++++.+.++++|.+.-..--
T Consensus 299 keg~~V~w~yi~r~LGqPSLiREsSrg~~pw~gsls~~k~~i~~--~~~~s~~gk~pl~~ViL~psLe~Rie~lA~aTa- 375 (630)
T KOG0742|consen 299 KEGTLVTWRYIERRLGQPSLIRESSRGRFPWIGSLSALKHPIQG--SRSASSRGKDPLEGVILHPSLEKRIEDLAIATA- 375 (630)
T ss_pred cccchhHHHHHHHHcCCchhhhhhccccCCCcccHHHHhchhhh--hHhhhhcCCCCcCCeecCHHHHHHHHHHHHHhc-
Confidence 4455688888888888876666544422100000000 000000 011123344579999999999999877443322
Q ss_pred cHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCC
Q 045456 232 RRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVY 281 (288)
Q Consensus 232 ~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~ 281 (288)
..+....+-|++|||||||||||++|+-||.+.|+++-.+.+++|.
T Consensus 376 ----NTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVA 421 (630)
T KOG0742|consen 376 ----NTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVA 421 (630)
T ss_pred ----ccccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcc
Confidence 2223456678999999999999999999999999999999988874
No 63
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.77 E-value=8.4e-09 Score=104.58 Aligned_cols=57 Identities=26% Similarity=0.387 Sum_probs=47.7
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
.+++|.+|++|+|++++++.|...++. | ..+..|||+||+|||||++++++|+.+++
T Consensus 8 rKYRPqtFdEVIGQe~Vv~~L~~aL~~-----------g-RL~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 8 RKWRPKDFASLVGQEHVVRALTHALDG-----------G-RLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHhc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 578999999999999988877765541 1 23567999999999999999999999975
No 64
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.77 E-value=1.2e-08 Score=91.13 Aligned_cols=82 Identities=26% Similarity=0.363 Sum_probs=68.9
Q ss_pred CCCCCccCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh---CCc
Q 045456 195 GGAWGSTNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFN 271 (288)
Q Consensus 195 ~~~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~ 271 (288)
++...+|....|..+++|+|.+.+|+.|.+..+.|+. |. +...+||+|+.||||||+++|+.+++ |+-
T Consensus 12 ~~~l~~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~-pannvLL~G~rGtGKSSlVkall~~y~~~GLR 82 (249)
T PF05673_consen 12 SGYLEPIKHPDPIRLDDLIGIERQKEALIENTEQFLQ--------GL-PANNVLLWGARGTGKSSLVKALLNEYADQGLR 82 (249)
T ss_pred CCcEEecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------CC-CCcceEEecCCCCCHHHHHHHHHHHHhhcCce
Confidence 3457777778888999999999999999999999987 44 36789999999999999999999977 677
Q ss_pred EEEEecCCCCCccc
Q 045456 272 IYDMELTSVYCNSE 285 (288)
Q Consensus 272 i~~l~~~~~~~~~~ 285 (288)
++.|.-.++.+-.+
T Consensus 83 lIev~k~~L~~l~~ 96 (249)
T PF05673_consen 83 LIEVSKEDLGDLPE 96 (249)
T ss_pred EEEECHHHhccHHH
Confidence 88887777665443
No 65
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=7.8e-09 Score=94.98 Aligned_cols=75 Identities=25% Similarity=0.378 Sum_probs=52.7
Q ss_pred CCCCccCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHH-HhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 196 GAWGSTNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYR-RVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 196 ~~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~-~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
..|..-...-..-|+.|+.+.++|+++..-...-+.-.+.-. .-=+.|.|-+|||||||||||+||+|+|+.|..
T Consensus 128 n~w~LPa~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSI 203 (423)
T KOG0744|consen 128 NHWYLPAAEFDGLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSI 203 (423)
T ss_pred hheeccchhhhhhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhhee
Confidence 356543333344688899999999998876554443222111 122467888999999999999999999999854
No 66
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.73 E-value=1.8e-08 Score=96.49 Aligned_cols=71 Identities=20% Similarity=0.281 Sum_probs=54.3
Q ss_pred ccccChhhhHHHHHHHHHHhhcHHHHHHhC-CcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCC
Q 045456 211 KIAMDPSMKQASIDDLDRFVKRRNFYRRVG-KVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVY 281 (288)
Q Consensus 211 ~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g-~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~ 281 (288)
-++|+++.|+.+..++.....+...-..++ ...++++||+||||||||++|+++|+.++.|++.++.+.+.
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~ 84 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFT 84 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceee
Confidence 468899999999887775443322211111 12358999999999999999999999999999999988664
No 67
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=1.6e-08 Score=100.33 Aligned_cols=57 Identities=23% Similarity=0.390 Sum_probs=47.5
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
.+++|.+|++|+|++++++.+...+.. + ..+..|||+||||||||++|+++|+.+++
T Consensus 8 ~k~rP~~f~divGq~~v~~~L~~~i~~-----------~-~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 8 RKWRPKSFSELVGQEHVVRALTNALEQ-----------Q-RLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHc-----------C-CCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 456899999999999998877766552 1 23567999999999999999999999976
No 68
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=1.8e-08 Score=100.80 Aligned_cols=57 Identities=30% Similarity=0.447 Sum_probs=47.1
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
.+++|.+|++|+|++.+++.|...+.. | ..+..|||+||+|||||++|+++|+.+++
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~-----------~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDA-----------G-RINHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 468899999999999888887765542 2 23557999999999999999999998873
No 69
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=1.7e-08 Score=99.61 Aligned_cols=57 Identities=26% Similarity=0.462 Sum_probs=46.9
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
.+++|.+|++|+|++++++.|...+.. + ..+..+||+||||||||++|+++|+.+.+
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~-----------~-~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQ-----------G-RLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 468899999999999988887765552 1 23456899999999999999999999864
No 70
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=1.7e-08 Score=103.96 Aligned_cols=58 Identities=28% Similarity=0.391 Sum_probs=47.7
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
.+++|.+|++|+|++.+++.|...+.. | ..+..|||+||||||||++|+++|+.+++.
T Consensus 8 eKyRP~tFddIIGQe~Iv~~LknaI~~-----------~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 8 RKWRPATFEQMVGQSHVLHALTNALTQ-----------Q-RLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 467899999999999988877665442 1 235678999999999999999999999764
No 71
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=7.6e-08 Score=93.39 Aligned_cols=77 Identities=19% Similarity=0.308 Sum_probs=60.4
Q ss_pred CCccccc--c-ChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC-cEEEEecCCCCC
Q 045456 207 ATFDKIA--M-DPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF-NIYDMELTSVYC 282 (288)
Q Consensus 207 ~~~~~l~--~-~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~-~i~~l~~~~~~~ 282 (288)
-.|++++ | +.+--+..+++...-+-.|+..+++|+..-+|+|||||||||||.+||.|.+.|+. +=-.|+++++.+
T Consensus 216 f~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~ 295 (744)
T KOG0741|consen 216 FNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILN 295 (744)
T ss_pred CChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHH
Confidence 3788874 2 34445556667776677899999999999999999999999999999999999974 455566666654
Q ss_pred c
Q 045456 283 N 283 (288)
Q Consensus 283 ~ 283 (288)
+
T Consensus 296 K 296 (744)
T KOG0741|consen 296 K 296 (744)
T ss_pred H
Confidence 4
No 72
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.70 E-value=1.9e-08 Score=93.49 Aligned_cols=69 Identities=25% Similarity=0.413 Sum_probs=53.3
Q ss_pred CCCccCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhC-----Cc
Q 045456 197 AWGSTNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK-----FN 271 (288)
Q Consensus 197 ~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~-----~~ 271 (288)
.| +..++|.+|++++|.+++++.+...+.. +. ..+++|+||||||||++|+++|+++. .+
T Consensus 4 ~w--~~ky~P~~~~~~~g~~~~~~~L~~~~~~-----------~~--~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~ 68 (337)
T PRK12402 4 LW--TEKYRPALLEDILGQDEVVERLSRAVDS-----------PN--LPHLLVQGPPGSGKTAAVRALARELYGDPWENN 68 (337)
T ss_pred ch--HHhhCCCcHHHhcCCHHHHHHHHHHHhC-----------CC--CceEEEECCCCCCHHHHHHHHHHHhcCcccccc
Confidence 57 4688999999999999887777664431 21 12699999999999999999999984 34
Q ss_pred EEEEecCCC
Q 045456 272 IYDMELTSV 280 (288)
Q Consensus 272 i~~l~~~~~ 280 (288)
+..+++++.
T Consensus 69 ~~~i~~~~~ 77 (337)
T PRK12402 69 FTEFNVADF 77 (337)
T ss_pred eEEechhhh
Confidence 667776553
No 73
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.70 E-value=2.2e-08 Score=99.96 Aligned_cols=57 Identities=21% Similarity=0.391 Sum_probs=47.4
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
..++|.+|++++|++.+++.+...+.. | ..++++||+||||||||++|+++|+.+.+
T Consensus 8 ~KyRP~~F~dIIGQe~iv~~L~~aI~~-----------~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 8 RKYRPHNFKQIIGQELIKKILVNAILN-----------N-KLTHAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 578999999999999988877765431 2 23578999999999999999999999853
No 74
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.69 E-value=1.9e-08 Score=101.46 Aligned_cols=57 Identities=26% Similarity=0.391 Sum_probs=47.5
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
.+++|.+|++|+|++.+++.|...+.. | ..+..|||+||||||||++|+++|+.+++
T Consensus 8 ~KyRP~~f~divGQe~vv~~L~~~l~~-----------~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 8 RKWRPQTFAEVVGQEHVLTALANALDL-----------G-RLHHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 356899999999999998877765542 2 23567999999999999999999999977
No 75
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.69 E-value=2.4e-08 Score=100.79 Aligned_cols=57 Identities=28% Similarity=0.434 Sum_probs=48.3
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
.+++|.+|++|+|++.+++.|...+.. | ..+.++||+||||||||++|+++|+.+++
T Consensus 8 rKYRP~tFddIIGQe~vv~~L~~ai~~-----------~-rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC 64 (709)
T PRK08691 8 RKWRPKTFADLVGQEHVVKALQNALDE-----------G-RLHHAYLLTGTRGVGKTTIARILAKSLNC 64 (709)
T ss_pred HHhCCCCHHHHcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 477899999999999998888776552 1 23568999999999999999999999865
No 76
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.68 E-value=2.3e-08 Score=96.47 Aligned_cols=66 Identities=21% Similarity=0.350 Sum_probs=53.0
Q ss_pred CCCCCCCccccccChhhhHH---HHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecC
Q 045456 202 NLDHPATFDKIAMDPSMKQA---SIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELT 278 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~---i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~ 278 (288)
+..+|.+|++++|+++..+. +.+.+. . + ....++|+||||||||++|+++|+.++.+++.++..
T Consensus 4 ~~~RP~~l~d~vGq~~~v~~~~~L~~~i~----~-------~--~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~ 70 (413)
T PRK13342 4 ERMRPKTLDEVVGQEHLLGPGKPLRRMIE----A-------G--RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAV 70 (413)
T ss_pred hhhCCCCHHHhcCcHHHhCcchHHHHHHH----c-------C--CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecc
Confidence 46789999999999887554 544442 1 1 134799999999999999999999999999999876
Q ss_pred CC
Q 045456 279 SV 280 (288)
Q Consensus 279 ~~ 280 (288)
..
T Consensus 71 ~~ 72 (413)
T PRK13342 71 TS 72 (413)
T ss_pred cc
Confidence 43
No 77
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.68 E-value=5e-08 Score=91.85 Aligned_cols=64 Identities=23% Similarity=0.294 Sum_probs=51.9
Q ss_pred CCcc-ccccChhhhHHHHHHHHHHhhcHHHHHHhCC-cccceeEEEcCCCCChHHHHHHHHHHhCC-------cEEEEec
Q 045456 207 ATFD-KIAMDPSMKQASIDDLDRFVKRRNFYRRVGK-VWKRGYLLFGPPGTGKSSLIAAMANYLKF-------NIYDMEL 277 (288)
Q Consensus 207 ~~~~-~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~-~~~rg~LL~GPpGtGKTsla~aiA~~l~~-------~i~~l~~ 277 (288)
.-|+ ++.|.++.++++.+.+..... |. ..++.++|+|||||||||+|+++|+.++. ++|.+..
T Consensus 47 ~~F~~~~~G~~~~i~~lv~~l~~~a~--------g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 47 RFFDHDFFGMEEAIERFVNYFKSAAQ--------GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cccchhccCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 3567 899999998888876665442 22 23567899999999999999999999987 9999998
Q ss_pred C
Q 045456 278 T 278 (288)
Q Consensus 278 ~ 278 (288)
.
T Consensus 119 ~ 119 (361)
T smart00763 119 N 119 (361)
T ss_pred c
Confidence 3
No 78
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=2.6e-08 Score=98.88 Aligned_cols=57 Identities=23% Similarity=0.366 Sum_probs=47.0
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
.+++|.+|++++|++.+++.+...+.. | ..+..+||+||||||||++|+++|+.+++
T Consensus 8 ~KyRP~~f~diiGq~~~v~~L~~~i~~-----------~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 8 RKYRPQSFAEVAGQQHALNSLVHALET-----------Q-KVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HHHCcCcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467899999999999988877665542 1 23557999999999999999999998875
No 79
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=2.2e-08 Score=100.70 Aligned_cols=57 Identities=23% Similarity=0.374 Sum_probs=47.0
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
.+++|.+|++++|++.+.+.|...+.. | ..+..|||+||+|||||++|+++|+.+++
T Consensus 8 ~KyRP~~f~dviGQe~vv~~L~~~l~~-----------~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 8 RKYRPRSFSEMVGQEHVVQALTNALTQ-----------Q-RLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 478899999999999888777665442 1 23557999999999999999999999875
No 80
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=2.8e-08 Score=100.04 Aligned_cols=57 Identities=19% Similarity=0.338 Sum_probs=47.7
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
..++|.+|++|+|++.+++.|...+.. | ..+.+|||+||||||||++|+++|+.+.+
T Consensus 8 ~kyRP~~f~eivGQe~i~~~L~~~i~~-----------~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 8 RKYRPSKFADITAQEHITHTIQNSLRM-----------D-RVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357899999999999988887665442 2 34667999999999999999999999976
No 81
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.67 E-value=4e-08 Score=101.79 Aligned_cols=69 Identities=28% Similarity=0.284 Sum_probs=52.7
Q ss_pred ccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCCcccc
Q 045456 211 KIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYCNSEL 286 (288)
Q Consensus 211 ~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l 286 (288)
++.|++++|+.|.+.+...... +......+||+||||||||++|++||+.++.+++.++++.+.+.+++
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i 389 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEI 389 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHH
Confidence 4778888888888765543221 22223469999999999999999999999999999998877654443
No 82
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=3.7e-08 Score=98.51 Aligned_cols=68 Identities=26% Similarity=0.278 Sum_probs=53.7
Q ss_pred cccChhhhHHHHHHHHHHhhcHHHHHHhCCcccce-eEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCCccccc
Q 045456 212 IAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRG-YLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYCNSELR 287 (288)
Q Consensus 212 l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg-~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~ 287 (288)
-.|.+++|++|.+-+.-.... . ..+.. ++|+||||+||||+++.||+.+|..|+.++++.+.+-+++|
T Consensus 325 HYGLekVKeRIlEyLAV~~l~----~----~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIR 393 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLT----K----KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIR 393 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHh----c----cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhc
Confidence 356788999998865532221 1 11212 66899999999999999999999999999999999999886
No 83
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.64 E-value=4.2e-08 Score=98.09 Aligned_cols=56 Identities=25% Similarity=0.442 Sum_probs=47.1
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
..++|.+|++++|++++++.+...+.. | ..+..|||+||+|||||++|+++|+.++
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIKQ-----------G-KISHAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 467899999999999988887776552 1 2356799999999999999999999986
No 84
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=3.8e-08 Score=98.76 Aligned_cols=57 Identities=23% Similarity=0.381 Sum_probs=48.1
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
.+++|.+|++|+|++++++.|...+.. | ..+..||||||||||||++|+++|+.+++
T Consensus 8 ~k~RP~~f~~iiGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c 64 (576)
T PRK14965 8 RKYRPQTFSDLTGQEHVSRTLQNAIDT-----------G-RVAHAFLFTGARGVGKTSTARILAKALNC 64 (576)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhcC
Confidence 467899999999999998888776552 2 24668999999999999999999999864
No 85
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.63 E-value=4.6e-08 Score=95.39 Aligned_cols=57 Identities=26% Similarity=0.312 Sum_probs=47.1
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
+.++|.+|++|+|++.+++.+...+.. | ..+..+|||||||+|||++|+++|+.+..
T Consensus 9 ~kyRP~~~~diiGq~~~v~~L~~~i~~-----------~-~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 9 RKYRPQTFSEILGQDAVVAVLKNALRF-----------N-RAAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 467899999999999988877765542 2 24567999999999999999999998854
No 86
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.62 E-value=4.2e-08 Score=101.68 Aligned_cols=57 Identities=30% Similarity=0.441 Sum_probs=47.9
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
.+++|.+|++|+|++.+++.|...+.. | .....|||+||+|||||++|+++|+.|++
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDS-----------G-RINHAYLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhCc
Confidence 578999999999999988887776542 2 23457999999999999999999999964
No 87
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=5.5e-08 Score=92.20 Aligned_cols=57 Identities=19% Similarity=0.405 Sum_probs=47.7
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
..++|.+|++++|++..++.+.+.+.. | ..+.++|||||||+|||++|+++|+.+..
T Consensus 9 ~k~rP~~~~~iig~~~~~~~l~~~i~~-----------~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 9 RKYRPQTFDDVVGQSHITNTLLNAIEN-----------N-HLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred HHHCCCcHHhcCCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 578999999999999988877776542 2 34568999999999999999999998854
No 88
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.60 E-value=5.9e-08 Score=98.67 Aligned_cols=57 Identities=32% Similarity=0.436 Sum_probs=48.7
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
..++|.+|++|+|++.+++.+...+.. | ..+..|||+||||||||++|+++|+.+.+
T Consensus 10 ~KyRP~~f~dIiGQe~~v~~L~~aI~~-----------~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC 66 (725)
T PRK07133 10 RKYRPKTFDDIVGQDHIVQTLKNIIKS-----------N-KISHAYLFSGPRGTGKTSVAKIFANALNC 66 (725)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 578999999999999998888776652 1 24668999999999999999999999865
No 89
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.59 E-value=6.5e-08 Score=96.64 Aligned_cols=57 Identities=21% Similarity=0.370 Sum_probs=47.8
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
..++|.+|++|+|++.+++.+...+.. | ..+..||||||||+|||++|+++|+.+++
T Consensus 8 ~kyRP~~f~diiGqe~iv~~L~~~i~~-----------~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c 64 (563)
T PRK06647 8 TKRRPRDFNSLEGQDFVVETLKHSIES-----------N-KIANAYIFSGPRGVGKTSSARAFARCLNC 64 (563)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhcc
Confidence 467899999999999998887776652 2 23567999999999999999999999875
No 90
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=7.1e-08 Score=96.72 Aligned_cols=58 Identities=24% Similarity=0.331 Sum_probs=48.1
Q ss_pred cCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 201 TNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 201 ~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
..+++|.+|++|+|++.+++.|...+.. | .....|||+||||||||++|+++|+.+.+
T Consensus 7 a~KyRP~sf~dIiGQe~v~~~L~~ai~~-----------~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 7 TARYRPQTFAEVAGQETVKAILSRAAQE-----------N-RVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 3578999999999999888877765542 2 22458999999999999999999999976
No 91
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.59 E-value=7.8e-08 Score=92.69 Aligned_cols=75 Identities=21% Similarity=0.221 Sum_probs=55.4
Q ss_pred Cccc-cccChhhhHHHHHHHHHHhhcHHHHHH--hCCc-ccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCC
Q 045456 208 TFDK-IAMDPSMKQASIDDLDRFVKRRNFYRR--VGKV-WKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYC 282 (288)
Q Consensus 208 ~~~~-l~~~~~~k~~i~~~l~~~~~~~~~~~~--~g~~-~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~ 282 (288)
.+++ |+|++++|+.+...+....++-..-.. -+.+ .+.++||+||||||||++|+++|+.++.|++.++.+.+..
T Consensus 68 ~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~ 146 (412)
T PRK05342 68 HLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTE 146 (412)
T ss_pred HHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhccc
Confidence 4554 799999999987777554433211000 0122 3567999999999999999999999999999999987654
No 92
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=8.1e-08 Score=94.47 Aligned_cols=57 Identities=19% Similarity=0.329 Sum_probs=47.5
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
..++|.+|++++|++.+.+.+...+.. | ..+..||||||||||||++|+++|+.+++
T Consensus 8 ~kyRP~~f~diiGq~~i~~~L~~~i~~-----------~-~i~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 8 RKYRPKFFKEVIGQEIVVRILKNAVKL-----------Q-RVSHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred HhhCCCcHHHccChHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 467899999999999998887776642 1 24567999999999999999999999864
No 93
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.58 E-value=8.9e-08 Score=89.83 Aligned_cols=56 Identities=29% Similarity=0.471 Sum_probs=47.2
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+.++|.+|++++|++++++.+.+.+.. | ..+..+||+||||+|||++|+++|+.+.
T Consensus 6 ~~~rp~~~~~iig~~~~~~~l~~~~~~-----------~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 6 RKYRPQTFEDVIGQEHIVQTLKNAIKN-----------G-RIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred HHhCCCcHhhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 567899999999999999888776642 2 2356799999999999999999999975
No 94
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.58 E-value=7.2e-08 Score=92.39 Aligned_cols=72 Identities=19% Similarity=0.218 Sum_probs=53.7
Q ss_pred ccccChhhhHHHHHHHHHHhhcHHHHHHhCCc-ccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCC
Q 045456 211 KIAMDPSMKQASIDDLDRFVKRRNFYRRVGKV-WKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYC 282 (288)
Q Consensus 211 ~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~-~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~ 282 (288)
.|+|+++.|+.+..++.....+...-.....+ .++++||+||||||||++|+++|+.++.|++.++.+.+..
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e 88 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE 88 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhcc
Confidence 37899999999988775433222111111111 2578999999999999999999999999999999887664
No 95
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=8.4e-08 Score=96.48 Aligned_cols=57 Identities=23% Similarity=0.335 Sum_probs=47.0
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
..++|.+|++|+|++++++.|...+.. | .....+||+||||||||++|+++|+.+++
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~~-----------~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIAE-----------G-RVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHh-----------C-CCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 578999999999999998887665542 1 23456899999999999999999998853
No 96
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.57 E-value=8.5e-08 Score=96.36 Aligned_cols=58 Identities=22% Similarity=0.429 Sum_probs=48.9
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
.+++|.+|++|+|++..++.|...+.. | ..+..+||+||+|+|||++|+++|+.+++.
T Consensus 16 ~KyRP~~f~dliGq~~~v~~L~~~~~~-----------g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMVRTLTNAFET-----------G-RIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 578999999999999988887775542 2 235689999999999999999999998764
No 97
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.56 E-value=9.4e-08 Score=94.61 Aligned_cols=56 Identities=27% Similarity=0.315 Sum_probs=47.3
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
.+++|.+|++++|++.+++.+...+.. | ..+..||||||||+|||++|+++|+.+.
T Consensus 6 ~KyRP~~fdeiiGqe~v~~~L~~~I~~-----------g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~ 61 (535)
T PRK08451 6 LKYRPKHFDELIGQESVSKTLSLALDN-----------N-RLAHAYLFSGLRGSGKTSSARIFARALV 61 (535)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence 478999999999999998888776542 2 2466799999999999999999999974
No 98
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.54 E-value=1.3e-07 Score=87.23 Aligned_cols=68 Identities=25% Similarity=0.397 Sum_probs=51.5
Q ss_pred CCCCccCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhC-----C
Q 045456 196 GAWGSTNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK-----F 270 (288)
Q Consensus 196 ~~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~-----~ 270 (288)
-.| ++.++|.+|+++++.+++++.+...+.. +. ...++|+||||||||++++++++++. .
T Consensus 5 ~~w--~~kyrP~~~~~~~g~~~~~~~l~~~i~~-----------~~--~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~ 69 (319)
T PRK00440 5 EIW--VEKYRPRTLDEIVGQEEIVERLKSYVKE-----------KN--MPHLLFAGPPGTGKTTAALALARELYGEDWRE 69 (319)
T ss_pred Ccc--chhhCCCcHHHhcCcHHHHHHHHHHHhC-----------CC--CCeEEEECCCCCCHHHHHHHHHHHHcCCcccc
Confidence 358 4799999999999999888777665431 11 12589999999999999999999973 3
Q ss_pred cEEEEecC
Q 045456 271 NIYDMELT 278 (288)
Q Consensus 271 ~i~~l~~~ 278 (288)
+++.++.+
T Consensus 70 ~~i~~~~~ 77 (319)
T PRK00440 70 NFLELNAS 77 (319)
T ss_pred ceEEeccc
Confidence 45555444
No 99
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.53 E-value=6e-08 Score=87.25 Aligned_cols=73 Identities=19% Similarity=0.347 Sum_probs=52.5
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELT 278 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 278 (288)
+..++.+|+++....+..+.+...+..+.... . ....+++|+||||||||+|+.|||+++ |..++.++.+
T Consensus 64 ~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~---~----~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~ 136 (244)
T PRK07952 64 PLHQNCSFENYRVECEGQMNALSKARQYVEEF---D----GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVA 136 (244)
T ss_pred ccccCCccccccCCCchHHHHHHHHHHHHHhh---c----cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHH
Confidence 35567799999766555444555555555321 1 113489999999999999999999998 7788888776
Q ss_pred CCC
Q 045456 279 SVY 281 (288)
Q Consensus 279 ~~~ 281 (288)
++.
T Consensus 137 ~l~ 139 (244)
T PRK07952 137 DIM 139 (244)
T ss_pred HHH
Confidence 654
No 100
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.51 E-value=2.2e-07 Score=87.37 Aligned_cols=68 Identities=29% Similarity=0.442 Sum_probs=49.6
Q ss_pred CccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhC--CcEEEEecCCCCCc
Q 045456 208 TFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK--FNIYDMELTSVYCN 283 (288)
Q Consensus 208 ~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~--~~i~~l~~~~~~~~ 283 (288)
.-+-++|+.++++..--.++. ++. |+-..|++||.||||||||.+|.+||++|| .||..++++++.+.
T Consensus 22 ~~~GlVGQ~~AReAagiiv~m-Ik~-------~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~ 91 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDM-IKE-------GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSS 91 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHH-HHT-------T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BT
T ss_pred ccccccChHHHHHHHHHHHHH-Hhc-------ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeec
Confidence 457889999988876544442 222 444578999999999999999999999997 89999999998765
No 101
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.48 E-value=2.2e-07 Score=86.55 Aligned_cols=69 Identities=28% Similarity=0.428 Sum_probs=53.1
Q ss_pred CccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhC--CcEEEEecCCCCCcc
Q 045456 208 TFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK--FNIYDMELTSVYCNS 284 (288)
Q Consensus 208 ~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~--~~i~~l~~~~~~~~~ 284 (288)
.=+-++|+.+.++..--.++ .++. |.-..||+|+.||||||||.+|-+||++|| .||..++++++.+..
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~-mik~-------gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E 107 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVK-MIKQ-------GKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLE 107 (450)
T ss_pred cCCcccchHHHHHhhhHHHH-HHHh-------CcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeec
Confidence 44667888888776322222 1211 555678999999999999999999999997 799999999987753
No 102
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=2e-07 Score=94.12 Aligned_cols=56 Identities=20% Similarity=0.411 Sum_probs=47.8
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
..++|.+|++|+|++++++.|...+.. | ..+..||||||+|+|||++|+++|+.+.
T Consensus 9 ~kyRP~~f~~viGq~~~~~~L~~~i~~-----------~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 9 RKYRPSTFESVVGQEALTTTLKNAIAT-----------N-KLAHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999998888776652 2 2466799999999999999999999885
No 103
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=2.1e-07 Score=93.99 Aligned_cols=57 Identities=26% Similarity=0.384 Sum_probs=47.8
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
..++|.+|++++|++++++.|...+.. | ....++||+||||||||++|+++|+.+++
T Consensus 8 ~kyRP~~f~~liGq~~i~~~L~~~l~~-----------~-rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 8 HKYRPQRFDELVGQEAIATTLKNALIS-----------N-RIAPAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred HHhCCCcHhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCChHHHHHHHHHHhcC
Confidence 478899999999999988887776552 1 12457999999999999999999999976
No 104
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.45 E-value=4.6e-07 Score=82.23 Aligned_cols=39 Identities=23% Similarity=0.210 Sum_probs=34.4
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYC 282 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~ 282 (288)
.+.+||.||||||||++|+++|+.+|.+++.++++.-..
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~ 59 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELT 59 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCC
Confidence 356999999999999999999999999999998876433
No 105
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=3.5e-07 Score=91.50 Aligned_cols=70 Identities=19% Similarity=0.271 Sum_probs=53.2
Q ss_pred ccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCCccccc
Q 045456 211 KIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYCNSELR 287 (288)
Q Consensus 211 ~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l~ 287 (288)
|-.|.+++|++|.+.+.--. + .|-.-.+-+.|+||||.||||+++.||..||..|+.++.+.+.+..|+|
T Consensus 412 DHYgm~dVKeRILEfiAV~k----L---rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIk 481 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGK----L---RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIK 481 (906)
T ss_pred cccchHHHHHHHHHHHHHHh----h---cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhc
Confidence 44567788998888554211 1 0211122366899999999999999999999999999999999998876
No 106
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.42 E-value=4.2e-07 Score=84.73 Aligned_cols=44 Identities=30% Similarity=0.416 Sum_probs=39.8
Q ss_pred ccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCCcccc
Q 045456 243 WKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYCNSEL 286 (288)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l 286 (288)
..+.+||.||||||||++++.+|..+++|++.++++...+..||
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDL 106 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhc
Confidence 35689999999999999999999999999999999888777654
No 107
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.41 E-value=4.1e-07 Score=87.58 Aligned_cols=74 Identities=26% Similarity=0.336 Sum_probs=52.5
Q ss_pred Cccc-cccChhhhHHHHHHHHHHhhcHHHHHH----hCCcc-cceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCC
Q 045456 208 TFDK-IAMDPSMKQASIDDLDRFVKRRNFYRR----VGKVW-KRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVY 281 (288)
Q Consensus 208 ~~~~-l~~~~~~k~~i~~~l~~~~~~~~~~~~----~g~~~-~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~ 281 (288)
.++. ++|+++.++.+...+....++-..... -+++. +..+||+||||||||++|+++|..++.|+..++.+.+.
T Consensus 74 ~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~ 153 (413)
T TIGR00382 74 HLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLT 153 (413)
T ss_pred HhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcc
Confidence 3444 488899999888777544433111000 01111 35699999999999999999999999999999987764
No 108
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=3e-07 Score=88.15 Aligned_cols=61 Identities=20% Similarity=0.270 Sum_probs=49.0
Q ss_pred CccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 208 TFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 208 ~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
.|++|+|++++++.+...+..... .+...+...+.++||+||||+|||++|+++|+.+.++
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~---~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA---DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc---cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 589999999999999888875432 2333455567889999999999999999999987654
No 109
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.38 E-value=3.4e-07 Score=93.89 Aligned_cols=67 Identities=22% Similarity=0.405 Sum_probs=50.1
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELT 278 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~ 278 (288)
...+|.+|++++|+++..... ..+...+.. +. ...++||||||||||++|+++|+.++.+++.++..
T Consensus 20 ek~RP~tldd~vGQe~ii~~~-~~L~~~i~~-------~~--~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~ 86 (725)
T PRK13341 20 DRLRPRTLEEFVGQDHILGEG-RLLRRAIKA-------DR--VGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAV 86 (725)
T ss_pred HhcCCCcHHHhcCcHHHhhhh-HHHHHHHhc-------CC--CceEEEECCCCCCHHHHHHHHHHHhcCcceeehhh
Confidence 477899999999998776431 112222221 11 23689999999999999999999999999888865
No 110
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.35 E-value=7e-07 Score=82.95 Aligned_cols=70 Identities=27% Similarity=0.385 Sum_probs=49.5
Q ss_pred CCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCC
Q 045456 206 PATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSV 280 (288)
Q Consensus 206 p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~ 280 (288)
..+|+++...+..+..+.+....|+.. +.. | +..+|++|+||||||||.|+.|||+++ |..+..+..+++
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~---~~~-~-~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l 195 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEA---YPP-G-EKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEF 195 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHH---hhc-c-CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHH
Confidence 357888876664455555555555543 111 1 245799999999999999999999998 788887776543
No 111
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.34 E-value=1.2e-06 Score=77.44 Aligned_cols=69 Identities=25% Similarity=0.375 Sum_probs=47.0
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELT 278 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 278 (288)
....|.+||++.+..+ +.+...+..+.. +....+.++|+||||||||++++++++++ +.+++.+++.
T Consensus 10 ~~~~~~~~d~f~~~~~--~~~~~~l~~~~~--------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~ 79 (227)
T PRK08903 10 GPPPPPTFDNFVAGEN--AELVARLRELAA--------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA 79 (227)
T ss_pred CCCChhhhcccccCCc--HHHHHHHHHHHh--------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH
Confidence 4456778999874332 223333333322 23345689999999999999999999976 6677777776
Q ss_pred CC
Q 045456 279 SV 280 (288)
Q Consensus 279 ~~ 280 (288)
+.
T Consensus 80 ~~ 81 (227)
T PRK08903 80 SP 81 (227)
T ss_pred Hh
Confidence 54
No 112
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.34 E-value=9.9e-07 Score=91.38 Aligned_cols=69 Identities=25% Similarity=0.221 Sum_probs=54.1
Q ss_pred ccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCCcccc
Q 045456 211 KIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYCNSEL 286 (288)
Q Consensus 211 ~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l 286 (288)
+..|.+++|++|.+.+...... +......++|+||||||||++++++|+.++.+++.++++.+.+..++
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i 391 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEI 391 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHh
Confidence 3778889999998866643321 11223358899999999999999999999999999999988776555
No 113
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.34 E-value=2.7e-07 Score=81.74 Aligned_cols=71 Identities=20% Similarity=0.348 Sum_probs=53.8
Q ss_pred CCCccCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh-C----Cc
Q 045456 197 AWGSTNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL-K----FN 271 (288)
Q Consensus 197 ~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-~----~~ 271 (288)
.| |++++|..++|++|.++..+.+.-..+ -|-. ..+++.||||||||+.+.++|.+| | --
T Consensus 16 ~w--VeKYrP~~l~dIVGNe~tv~rl~via~-----------~gnm--P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~ 80 (333)
T KOG0991|consen 16 PW--VEKYRPSVLQDIVGNEDTVERLSVIAK-----------EGNM--PNLIISGPPGTGKTTSILCLARELLGDSYKEA 80 (333)
T ss_pred hH--HHhhCchHHHHhhCCHHHHHHHHHHHH-----------cCCC--CceEeeCCCCCchhhHHHHHHHHHhChhhhhH
Confidence 37 789999999999999988776644222 2332 269999999999999999999987 3 24
Q ss_pred EEEEecCCCCC
Q 045456 272 IYDMELTSVYC 282 (288)
Q Consensus 272 i~~l~~~~~~~ 282 (288)
+..+++++-+.
T Consensus 81 vLELNASdeRG 91 (333)
T KOG0991|consen 81 VLELNASDERG 91 (333)
T ss_pred hhhccCccccc
Confidence 66777766544
No 114
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.33 E-value=6.1e-07 Score=83.97 Aligned_cols=70 Identities=23% Similarity=0.344 Sum_probs=48.4
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCc---EEEEecC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFN---IYDMELT 278 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~---i~~l~~~ 278 (288)
+..+|.+++|.+|++++-.+ .-.+...+. +-.+ ..++|+||||||||++|+.||+..+.+ |+.++++
T Consensus 130 ermRPktL~dyvGQ~hlv~q-~gllrs~ie------q~~i---pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt 199 (554)
T KOG2028|consen 130 ERMRPKTLDDYVGQSHLVGQ-DGLLRSLIE------QNRI---PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT 199 (554)
T ss_pred hhcCcchHHHhcchhhhcCc-chHHHHHHH------cCCC---CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc
Confidence 45678899999998876443 222222222 1122 369999999999999999999998777 6666665
Q ss_pred CCC
Q 045456 279 SVY 281 (288)
Q Consensus 279 ~~~ 281 (288)
.-.
T Consensus 200 ~a~ 202 (554)
T KOG2028|consen 200 NAK 202 (554)
T ss_pred ccc
Confidence 433
No 115
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.32 E-value=4.3e-07 Score=91.69 Aligned_cols=69 Identities=25% Similarity=0.346 Sum_probs=54.4
Q ss_pred CCCCccCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEE
Q 045456 196 GAWGSTNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYD 274 (288)
Q Consensus 196 ~~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (288)
..| +++++|.++++|+++++..+++...+.... .+....+-++|+||||||||++++++|++++.+++.
T Consensus 72 ~pW--~eKyrP~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~E 140 (637)
T TIGR00602 72 EPW--VEKYKPETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQE 140 (637)
T ss_pred Cch--HHHhCCCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHH
Confidence 468 579999999999999988887776655322 122334458999999999999999999999987655
No 116
>PF08740 BCS1_N: BCS1 N terminal; InterPro: IPR014851 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. This domain is found at the N terminus of the mitochondrial BSC1 subfamily, belonging to the AAA ATPase family. At2g21640 and BCS1 are both highly stress responsive genes which encode mitochondrial proteins. The promoter of BCS1 was not responsive to H2O2 or rotenone, but highly responsive to salicylic acid (SA). The SA dependent pathway represented by BCS1 is one of at least three distinctive pathways to regulate mitochondrial stress response at a transcriptional level []. The BCS1 product is a mitochondrial protein required for the assembly of respiratory complex III []. BCS1, a component of the inner membrane of mitochondria, belongs to the group of proteins with internal, noncleavable import signals. It has a transmembrane domain (amino acid residues 51 to 68), a presequence type helix (residues 69 to 83), and an import auxiliary region (residues 84 to 126) [].
Probab=98.31 E-value=4.1e-05 Score=65.73 Aligned_cols=136 Identities=17% Similarity=0.187 Sum_probs=94.3
Q ss_pred eEEEEecCCCCCcChHHHHHHHHhhhccC-CCcCceEEeecC----------------------CCCceEEecCCCCeEE
Q 045456 59 MTLIIDEYNGFSINQLYEASELYLSTKIT-ASLEKLKVSKTT----------------------KEKNLSVTINKGEKIS 115 (288)
Q Consensus 59 ~ti~i~e~~~~~~N~ly~a~~~YL~~~~~-~~~~rL~~~~~~----------------------~~~~~~l~~~~ge~v~ 115 (288)
.|+.|++ .+++|+.+-.+|+.... ..++++.+.... +.+.+.+.|..| ...
T Consensus 27 ~sv~I~~-----~D~~Y~~lm~Wls~q~~~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~G-~h~ 100 (187)
T PF08740_consen 27 SSVEIPS-----DDEAYDWLMRWLSSQPFSKRSRHLSATTRSNSSWDDDESDDEDSWDTNTSDDKKKPIRFTPSPG-THW 100 (187)
T ss_pred EEEEECC-----CCHHHHHHHHHHhhCCcccccceeEEEeecccccccccccccchhccccccCCcCCeEEEeCCC-CEE
Confidence 5667765 45899999999988754 445666665522 356789999999 566
Q ss_pred eccCCeeEEEEEeeecccccccc--CCCcceEEEEEeccchhhHHHHhhhhHHHHHHHHHHhccceeEEEEecCCCCCCC
Q 045456 116 DIFEGICLVWEMTCKETEERSSQ--RGKAERVIELSFPKKYMERILNIYLPYVMEKSNAIKEQNKVVKLYAVGHFGGDSD 193 (288)
Q Consensus 116 D~F~Gv~~~W~~~~~~~~~~~~~--~~~~~r~~eL~f~~~~r~~vl~syl~~Il~~~~~i~~~~~~~kl~~~~~~~~~~~ 193 (288)
..|+| .|..+.++.++...+ .+.+.+.++|+|..+.++ +|..+|.++.+.+. +++...+.||...+.
T Consensus 101 F~y~G---~~~~~~R~~~~~~~~~~~~~~~e~l~l~~lg~s~~-~l~~ll~ear~~~~--~~~~~~t~Iy~~~~~----- 169 (187)
T PF08740_consen 101 FWYKG---RWFWFSRQRESNSYNSWTGAPDETLTLSCLGRSPK-PLKDLLEEAREYYL--KKQKGKTTIYRADGS----- 169 (187)
T ss_pred EEECC---EEEEEEEEeccccccccCCCCceEEEEEEecCCHH-HHHHHHHHHHHHHH--HhcCCcEEEEeCCCC-----
Confidence 77999 688888776443332 134588999999999877 66665555554442 233334559998542
Q ss_pred CCCCCCccCCCCCCCcccc
Q 045456 194 RGGAWGSTNLDHPATFDKI 212 (288)
Q Consensus 194 ~~~~w~~~~~~~p~~~~~l 212 (288)
+..|..+...+++.+++|
T Consensus 170 -~~~W~~~~~r~~RplsTV 187 (187)
T PF08740_consen 170 -EYRWRRVASRPKRPLSTV 187 (187)
T ss_pred -CCCCcCCCCcCCCCCCCC
Confidence 226999888888898875
No 117
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.30 E-value=1.3e-06 Score=76.68 Aligned_cols=68 Identities=22% Similarity=0.256 Sum_probs=46.5
Q ss_pred CCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCC
Q 045456 203 LDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTS 279 (288)
Q Consensus 203 ~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~ 279 (288)
...+.+|++++.. ..+.+.+.+..+.. ...++.++|+||||||||++|+++++++ +.+++.+++++
T Consensus 8 ~~~~~~~~~~~~~--~~~~~~~~l~~~~~---------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~ 76 (226)
T TIGR03420 8 LPDDPTFDNFYAG--GNAELLAALRQLAA---------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE 76 (226)
T ss_pred CCCchhhcCcCcC--CcHHHHHHHHHHHh---------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH
Confidence 3445688888732 23334444444332 1235679999999999999999999887 46788888766
Q ss_pred CC
Q 045456 280 VY 281 (288)
Q Consensus 280 ~~ 281 (288)
+.
T Consensus 77 ~~ 78 (226)
T TIGR03420 77 LA 78 (226)
T ss_pred HH
Confidence 54
No 118
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.28 E-value=1.1e-06 Score=87.48 Aligned_cols=65 Identities=22% Similarity=0.346 Sum_probs=51.2
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh----------CCc
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL----------KFN 271 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~ 271 (288)
++.+|.+|++++|.++..+.+...+. + +.+..+||+||||||||++|+++++++ +.+
T Consensus 57 ~~~rp~~f~~iiGqs~~i~~l~~al~------------~-~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~ 123 (531)
T TIGR02902 57 EKTRPKSFDEIIGQEEGIKALKAALC------------G-PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAA 123 (531)
T ss_pred HhhCcCCHHHeeCcHHHHHHHHHHHh------------C-CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCC
Confidence 57899999999999988777764321 1 124579999999999999999998753 368
Q ss_pred EEEEecCC
Q 045456 272 IYDMELTS 279 (288)
Q Consensus 272 i~~l~~~~ 279 (288)
++.++++.
T Consensus 124 fi~id~~~ 131 (531)
T TIGR02902 124 FVEIDATT 131 (531)
T ss_pred EEEEcccc
Confidence 89998764
No 119
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.26 E-value=1.3e-06 Score=85.36 Aligned_cols=75 Identities=23% Similarity=0.377 Sum_probs=57.8
Q ss_pred CCCCCCccCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEE
Q 045456 194 RGGAWGSTNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIY 273 (288)
Q Consensus 194 ~~~~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~ 273 (288)
+...| ++...|++.++|+.......++.+++..+.. ... ....+-+||.||+|||||++++.||+++|+.+.
T Consensus 68 ~~elW--~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~---~~~---~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~ 139 (634)
T KOG1970|consen 68 EFELW--VEKYKPRTLEELAVHKKKISEVKQWLKQVAE---FTP---KLGSRILLLTGPSGCGKSTTVKVLSKELGYQLI 139 (634)
T ss_pred ccchh--HHhcCcccHHHHhhhHHhHHHHHHHHHHHHH---hcc---CCCceEEEEeCCCCCCchhHHHHHHHhhCceee
Confidence 34578 6799999999999988888888777762221 111 112345889999999999999999999999998
Q ss_pred EEe
Q 045456 274 DME 276 (288)
Q Consensus 274 ~l~ 276 (288)
...
T Consensus 140 Ew~ 142 (634)
T KOG1970|consen 140 EWS 142 (634)
T ss_pred eec
Confidence 876
No 120
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.25 E-value=2.3e-06 Score=68.18 Aligned_cols=40 Identities=35% Similarity=0.600 Sum_probs=35.4
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCCCCc
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSVYCN 283 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~ 283 (288)
.+.++++||||||||++++.+++.+ +.+++.++..+....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~ 61 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEG 61 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhh
Confidence 4679999999999999999999999 999999998776544
No 121
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.25 E-value=1.9e-06 Score=76.62 Aligned_cols=81 Identities=22% Similarity=0.338 Sum_probs=67.7
Q ss_pred CCCCccCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh---CCcE
Q 045456 196 GAWGSTNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNI 272 (288)
Q Consensus 196 ~~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i 272 (288)
+...++...+|..+.+|+|.+.+|+.+.+..+.|+. |. +...+||+|--||||||+++|+-+++ |..+
T Consensus 46 ~~L~pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G~-pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrL 116 (287)
T COG2607 46 GYLEPVPDPDPIDLADLVGVDRQKEALVRNTEQFAE--------GL-PANNVLLWGARGTGKSSLVKALLNEYADEGLRL 116 (287)
T ss_pred CcccCCCCCCCcCHHHHhCchHHHHHHHHHHHHHHc--------CC-cccceEEecCCCCChHHHHHHHHHHHHhcCCeE
Confidence 455667778889999999999999999999998886 44 35689999999999999999999887 5678
Q ss_pred EEEecCCCCCccc
Q 045456 273 YDMELTSVYCNSE 285 (288)
Q Consensus 273 ~~l~~~~~~~~~~ 285 (288)
+.|+-.++.+-++
T Consensus 117 VEV~k~dl~~Lp~ 129 (287)
T COG2607 117 VEVDKEDLATLPD 129 (287)
T ss_pred EEEcHHHHhhHHH
Confidence 8888777665443
No 122
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.24 E-value=2.1e-06 Score=85.10 Aligned_cols=67 Identities=19% Similarity=0.282 Sum_probs=51.0
Q ss_pred CCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh-CCcEEEEecC
Q 045456 205 HPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL-KFNIYDMELT 278 (288)
Q Consensus 205 ~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-~~~i~~l~~~ 278 (288)
+-.-|+|+.|.++.++.|.+.+...... ++ ..++-++|.||||+|||+|+++||+.+ .+|+|.+.++
T Consensus 71 ry~fF~d~yGlee~ieriv~~l~~Aa~g------l~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg~ 138 (644)
T PRK15455 71 RYPAFEEFYGMEEAIEQIVSYFRHAAQG------LE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKAN 138 (644)
T ss_pred cccchhcccCcHHHHHHHHHHHHHHHHh------cC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecCC
Confidence 3347899999999999988766443322 11 223457799999999999999999988 4799988773
No 123
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.24 E-value=1.1e-06 Score=76.90 Aligned_cols=46 Identities=35% Similarity=0.506 Sum_probs=36.0
Q ss_pred CccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh
Q 045456 208 TFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 208 ~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
.|++|+|++..|+.+.-+.. | ..++||+||||||||++|++++..|
T Consensus 1 Df~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999988765444 3 3589999999999999999999776
No 124
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.23 E-value=1.1e-06 Score=69.52 Aligned_cols=31 Identities=39% Similarity=0.726 Sum_probs=28.5
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCCcEEEEec
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKFNIYDMEL 277 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~ 277 (288)
|++.||||+||||+|+.+|+.+|++++.++-
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 6789999999999999999999999887765
No 125
>PRK12377 putative replication protein; Provisional
Probab=98.21 E-value=3.1e-06 Score=76.38 Aligned_cols=68 Identities=19% Similarity=0.311 Sum_probs=44.8
Q ss_pred CCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCCC
Q 045456 207 ATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSVY 281 (288)
Q Consensus 207 ~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~ 281 (288)
.+|++.....+..+.+...+..+...- .. ...+++|+||||||||.||.|||+++ |..+..++.+++.
T Consensus 71 ~tFdnf~~~~~~~~~a~~~a~~~a~~~---~~----~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~ 141 (248)
T PRK12377 71 CSFANYQVQNDGQRYALSQAKSIADEL---MT----GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVM 141 (248)
T ss_pred CCcCCcccCChhHHHHHHHHHHHHHHH---Hh----cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHH
Confidence 477777654433333444444443321 11 13589999999999999999999998 5677777665543
No 126
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.20 E-value=2.2e-06 Score=86.70 Aligned_cols=65 Identities=20% Similarity=0.370 Sum_probs=50.9
Q ss_pred CCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh----------CCcE
Q 045456 203 LDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL----------KFNI 272 (288)
Q Consensus 203 ~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i 272 (288)
..+|.+|++++|.+...+.+.+.+. .+.+..++|+||||||||++|+++++.. +.++
T Consensus 147 ~~rp~~~~~iiGqs~~~~~l~~~ia-------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~f 213 (615)
T TIGR02903 147 LLRPRAFSEIVGQERAIKALLAKVA-------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPF 213 (615)
T ss_pred hcCcCcHHhceeCcHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCe
Confidence 4568999999999888776654332 1234579999999999999999998776 4578
Q ss_pred EEEecCCC
Q 045456 273 YDMELTSV 280 (288)
Q Consensus 273 ~~l~~~~~ 280 (288)
+.+++.++
T Consensus 214 v~i~~~~l 221 (615)
T TIGR02903 214 VEVDGTTL 221 (615)
T ss_pred EEEechhc
Confidence 99988765
No 127
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.19 E-value=2.7e-06 Score=87.76 Aligned_cols=63 Identities=14% Similarity=0.242 Sum_probs=49.2
Q ss_pred cccChhhhHHHHHHHHHHhhcHHHHHHhCCc----ccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCC
Q 045456 212 IAMDPSMKQASIDDLDRFVKRRNFYRRVGKV----WKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYC 282 (288)
Q Consensus 212 l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~----~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~ 282 (288)
|+|+++.++.|.+.+..... |.. +...+||+||||||||.+|+++|+.++.+++.++.++...
T Consensus 460 ViGQ~~ai~~l~~~i~~~~~--------gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~ 526 (758)
T PRK11034 460 VFGQDKAIEALTEAIKMSRA--------GLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYME 526 (758)
T ss_pred EeCcHHHHHHHHHHHHHHhc--------cccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcc
Confidence 67788888877777664322 221 1235899999999999999999999999999999887654
No 128
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.17 E-value=2e-06 Score=88.68 Aligned_cols=65 Identities=25% Similarity=0.384 Sum_probs=52.0
Q ss_pred CCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh----------CCcEEE
Q 045456 205 HPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL----------KFNIYD 274 (288)
Q Consensus 205 ~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~~ 274 (288)
+|..+++++|.++..+.+.+.+.. .-+.+++|+||||||||++++++|..+ +..++.
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 677899999988777765554321 125689999999999999999999998 888999
Q ss_pred EecCCCCC
Q 045456 275 MELTSVYC 282 (288)
Q Consensus 275 l~~~~~~~ 282 (288)
++++.+..
T Consensus 244 ~~~~~l~a 251 (731)
T TIGR02639 244 LDMGSLLA 251 (731)
T ss_pred ecHHHHhh
Confidence 99877653
No 129
>PHA02244 ATPase-like protein
Probab=98.16 E-value=4.6e-06 Score=78.94 Aligned_cols=34 Identities=26% Similarity=0.439 Sum_probs=31.2
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCCcEEEEec
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMEL 277 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~ 277 (288)
...+||+||||||||++|++||..++.|++.++.
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~ 152 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNA 152 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 3469999999999999999999999999999873
No 130
>PRK08116 hypothetical protein; Validated
Probab=98.14 E-value=4.2e-06 Score=76.32 Aligned_cols=69 Identities=26% Similarity=0.447 Sum_probs=45.7
Q ss_pred CCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCC
Q 045456 207 ATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSV 280 (288)
Q Consensus 207 ~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~ 280 (288)
.+|++....+.. +.+...+..+... +.... ...+|++|+||||||||.||.|||+++ +.+++.++.+++
T Consensus 82 ~tFdnf~~~~~~-~~a~~~a~~y~~~---~~~~~-~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~l 153 (268)
T PRK08116 82 STFENFLFDKGS-EKAYKIARKYVKK---FEEMK-KENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQL 153 (268)
T ss_pred cchhcccCChHH-HHHHHHHHHHHHH---HHhhc-cCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 477777644433 2233444444432 22211 224589999999999999999999986 788888887653
No 131
>PRK06893 DNA replication initiation factor; Validated
Probab=98.14 E-value=5.3e-06 Score=73.80 Aligned_cols=66 Identities=20% Similarity=0.291 Sum_probs=41.5
Q ss_pred cCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEec
Q 045456 201 TNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMEL 277 (288)
Q Consensus 201 ~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~ 277 (288)
+....+.+||++++.++. .....+... . .......++||||||||||.|+.|+|+++ +.....++.
T Consensus 7 ~~~~~~~~fd~f~~~~~~--~~~~~~~~~------~---~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 7 IHQIDDETLDNFYADNNL--LLLDSLRKN------F---IDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred CCCCCcccccccccCChH--HHHHHHHHH------h---hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 345567799999976642 122222211 1 11122357899999999999999999986 344455544
No 132
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=4.9e-06 Score=77.25 Aligned_cols=72 Identities=21% Similarity=0.235 Sum_probs=56.8
Q ss_pred ccccChhhhHHHHHHHHHHhhcHHHHHHhCC-cccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCC
Q 045456 211 KIAMDPSMKQASIDDLDRFVKRRNFYRRVGK-VWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYC 282 (288)
Q Consensus 211 ~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~-~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~ 282 (288)
-++|+++.|+.+.-++..-..+..+-..+.- -.|+++|+.||.|.|||-+|+.+|+..|.||+.|+++..+.
T Consensus 16 yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTE 88 (444)
T COG1220 16 YIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTE 88 (444)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeee
Confidence 4689999999988777765554433333322 24789999999999999999999999999999999986654
No 133
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=3.8e-06 Score=79.90 Aligned_cols=54 Identities=28% Similarity=0.457 Sum_probs=46.1
Q ss_pred CCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 204 DHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 204 ~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
.+|+++++|+|+++.++.+.+.+.. | ..+..+||+||+|+||+++|.++|+.+-
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~-----------~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Ll 66 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS-----------G-RLHHAWLIGGPQGIGKATLAYRMARFLL 66 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 5899999999999999888776553 2 3456899999999999999999999884
No 134
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.13 E-value=4.7e-06 Score=78.01 Aligned_cols=43 Identities=35% Similarity=0.452 Sum_probs=38.2
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCCcccc
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYCNSEL 286 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l 286 (288)
.+.+||-||||||||++|+++|..++.+++.++++.-...+|+
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~ 85 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDL 85 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHh
Confidence 4579999999999999999999999999999999876665554
No 135
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.12 E-value=6.8e-06 Score=77.46 Aligned_cols=64 Identities=16% Similarity=0.249 Sum_probs=48.8
Q ss_pred cccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhC---------CcEEEEecCCC
Q 045456 210 DKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK---------FNIYDMELTSV 280 (288)
Q Consensus 210 ~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~---------~~i~~l~~~~~ 280 (288)
+++.+-++..+.|...+...+. | ..+..++++||||||||++++++++++. .+++.+++...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 4678888888888887765443 1 2245799999999999999999998764 57888887665
Q ss_pred CC
Q 045456 281 YC 282 (288)
Q Consensus 281 ~~ 282 (288)
.+
T Consensus 86 ~~ 87 (365)
T TIGR02928 86 DT 87 (365)
T ss_pred CC
Confidence 54
No 136
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.10 E-value=5.4e-06 Score=85.59 Aligned_cols=63 Identities=22% Similarity=0.373 Sum_probs=45.2
Q ss_pred cccChhhhHHHHHHHHHHhhcHHHHHHhCCcc---cce-eEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCC
Q 045456 212 IAMDPSMKQASIDDLDRFVKRRNFYRRVGKVW---KRG-YLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYC 282 (288)
Q Consensus 212 l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~---~rg-~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~ 282 (288)
|+|+++.++.|.+.+.. .+.|+.. +.| +||+||||||||.+|+++|+.++.+++.++.++..+
T Consensus 456 v~GQ~~ai~~l~~~i~~--------~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~ 522 (731)
T TIGR02639 456 IFGQDEAIDSLVSSIKR--------SRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYME 522 (731)
T ss_pred eeCcHHHHHHHHHHHHH--------HhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhh
Confidence 45555555555554432 1233321 333 889999999999999999999999999999887654
No 137
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.07 E-value=5.8e-06 Score=74.83 Aligned_cols=67 Identities=24% Similarity=0.511 Sum_probs=45.6
Q ss_pred CccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCCCC
Q 045456 208 TFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSVYC 282 (288)
Q Consensus 208 ~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~ 282 (288)
.+.|+-+.+...+.....+..+. ++|. -..+++|+||||+|||.||.|||+++ |..++.+..+++..
T Consensus 77 ~~~d~~~~~~~~~~~l~~~~~~~---~~~~-----~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~ 146 (254)
T COG1484 77 EEFDFEFQPGIDKKALEDLASLV---EFFE-----RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLS 146 (254)
T ss_pred ccccccCCcchhHHHHHHHHHHH---HHhc-----cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 44555555554444444343333 2232 35689999999999999999999998 67788887776543
No 138
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.07 E-value=2.3e-06 Score=84.23 Aligned_cols=57 Identities=26% Similarity=0.475 Sum_probs=48.5
Q ss_pred CCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 203 LDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 203 ~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
+++|.+|++++|++.+.+.|...+.. + ....+|||.||-||||||+|+.+|+.+++.
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~-----------~-ri~hAYlfsG~RGvGKTt~Ari~AkalNC~ 65 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALEN-----------G-RIAHAYLFSGPRGVGKTTIARILAKALNCE 65 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHh-----------C-cchhhhhhcCCCCcCchhHHHHHHHHhcCC
Confidence 56899999999999998888887663 1 235689999999999999999999998764
No 139
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.04 E-value=8.6e-06 Score=65.78 Aligned_cols=51 Identities=14% Similarity=0.149 Sum_probs=41.5
Q ss_pred cccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccce--eEEEcCCCCChHHHHHHHHHHh
Q 045456 210 DKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRG--YLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 210 ~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg--~LL~GPpGtGKTsla~aiA~~l 268 (288)
..|.|++-+++.|.+++..++..+ .+++. +.|+||||||||.+++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~--------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANP--------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCC--------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 467888999999999999988653 23333 4589999999999999999985
No 140
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=2.5e-06 Score=78.62 Aligned_cols=76 Identities=22% Similarity=0.229 Sum_probs=52.5
Q ss_pred Cccc-cccChhhhHHHHHHHHHHhhcHHHH-HHhCCcc-cceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCCc
Q 045456 208 TFDK-IAMDPSMKQASIDDLDRFVKRRNFY-RRVGKVW-KRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYCN 283 (288)
Q Consensus 208 ~~~~-l~~~~~~k~~i~~~l~~~~~~~~~~-~~~g~~~-~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~ 283 (288)
.+|+ ++|++..|+.+.-++-.+.++-... .+-++.. +.++||.||+|||||.||+.+|+.|+.||..-++++++..
T Consensus 58 ~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEA 136 (408)
T COG1219 58 HLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEA 136 (408)
T ss_pred HhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhc
Confidence 3444 4677777777655554433321111 0011222 4569999999999999999999999999999999988754
No 141
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.03 E-value=7.8e-06 Score=85.72 Aligned_cols=66 Identities=18% Similarity=0.359 Sum_probs=51.5
Q ss_pred CCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh----------CCcEE
Q 045456 204 DHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL----------KFNIY 273 (288)
Q Consensus 204 ~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~ 273 (288)
-+|..++.++|.++..+.+.+.+.. ..+..++|+||||||||++++++|..+ +.+++
T Consensus 172 ~r~~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~ 238 (857)
T PRK10865 172 AEQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL 238 (857)
T ss_pred HhcCCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEE
Confidence 4567899999988765555443331 124579999999999999999999998 88999
Q ss_pred EEecCCCCC
Q 045456 274 DMELTSVYC 282 (288)
Q Consensus 274 ~l~~~~~~~ 282 (288)
.++++.+..
T Consensus 239 ~l~l~~l~a 247 (857)
T PRK10865 239 ALDMGALVA 247 (857)
T ss_pred EEehhhhhh
Confidence 999987653
No 142
>PRK06620 hypothetical protein; Validated
Probab=98.03 E-value=1.1e-05 Score=71.24 Aligned_cols=62 Identities=21% Similarity=0.194 Sum_probs=40.8
Q ss_pred CCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcc-cceeEEEcCCCCChHHHHHHHHHHhCCcE
Q 045456 204 DHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVW-KRGYLLFGPPGTGKSSLIAAMANYLKFNI 272 (288)
Q Consensus 204 ~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~-~rg~LL~GPpGtGKTsla~aiA~~l~~~i 272 (288)
.++-+|++++..+.-.. ....+..+... .+..+ .+.++||||||||||++++++++..+..+
T Consensus 10 ~~~~tfd~Fvvg~~N~~-a~~~~~~~~~~------~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~ 72 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQ-AYNIIKNWQCG------FGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYI 72 (214)
T ss_pred CCCCCchhhEecccHHH-HHHHHHHHHHc------cccCCCcceEEEECCCCCCHHHHHHHHHhccCCEE
Confidence 34458999876553322 33434433221 12222 36799999999999999999999887643
No 143
>PHA02624 large T antigen; Provisional
Probab=98.02 E-value=1.2e-05 Score=80.22 Aligned_cols=40 Identities=23% Similarity=0.313 Sum_probs=34.0
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~ 279 (288)
|+|.++.++|+||||||||+++.+|++.||-.+..++.+.
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt 466 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP 466 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCc
Confidence 6777888999999999999999999999965566677544
No 144
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.02 E-value=6.6e-06 Score=77.29 Aligned_cols=51 Identities=37% Similarity=0.451 Sum_probs=40.7
Q ss_pred CCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh
Q 045456 205 HPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 205 ~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
.|..|++++|+++.++.+.-.+.. +-..++||.||||||||++|+++|+.+
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 467899999999988876543221 112479999999999999999999998
No 145
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.98 E-value=1.3e-05 Score=71.58 Aligned_cols=64 Identities=19% Similarity=0.230 Sum_probs=40.9
Q ss_pred CCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhC---CcEEEEec
Q 045456 203 LDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK---FNIYDMEL 277 (288)
Q Consensus 203 ~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~---~~i~~l~~ 277 (288)
..++.+||+.+... .+.+...+..+... +..+.++||||||||||+++.++|+++. ..+..+++
T Consensus 15 ~~~~~~fd~f~~~~--n~~a~~~l~~~~~~---------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~ 81 (235)
T PRK08084 15 LPDDETFASFYPGD--NDSLLAALQNALRQ---------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL 81 (235)
T ss_pred CCCcCCccccccCc--cHHHHHHHHHHHhC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH
Confidence 44456899987442 22344444443321 1134799999999999999999998764 33444444
No 146
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.98 E-value=1.1e-05 Score=76.24 Aligned_cols=55 Identities=20% Similarity=0.275 Sum_probs=46.3
Q ss_pred CCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 204 DHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 204 ~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
.||+.+++|+|++++++.+...+.. | ..+..+||+||+|+|||++|.++|+.+..
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~-----------g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYRE-----------G-KLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHc-----------C-CCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 5899999999999998888775542 2 23557999999999999999999999865
No 147
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.97 E-value=8.3e-06 Score=85.25 Aligned_cols=63 Identities=19% Similarity=0.321 Sum_probs=49.9
Q ss_pred CCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh----------CCcEEEEe
Q 045456 207 ATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL----------KFNIYDME 276 (288)
Q Consensus 207 ~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~~l~ 276 (288)
..++.++|.++..+.+.+.+.. ..+++++|+||||||||++|+++|..+ +.+++.++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 4678888888777777665432 235689999999999999999999987 47899999
Q ss_pred cCCCCC
Q 045456 277 LTSVYC 282 (288)
Q Consensus 277 ~~~~~~ 282 (288)
++++..
T Consensus 243 ~~~l~a 248 (821)
T CHL00095 243 IGLLLA 248 (821)
T ss_pred HHHHhc
Confidence 877653
No 148
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.97 E-value=2.2e-05 Score=74.80 Aligned_cols=65 Identities=18% Similarity=0.242 Sum_probs=47.0
Q ss_pred ccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh-----CCcEEEEecCCCCC
Q 045456 209 FDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL-----KFNIYDMELTSVYC 282 (288)
Q Consensus 209 ~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~~~~~~~ 282 (288)
.+.+++-++..++|...+...+. | ..+..++++||||||||++++.+++++ +..++.+++....+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~--------~-~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALR--------G-SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhC--------C-CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 35566667666777666654332 1 124568999999999999999999987 57788888765543
No 149
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.96 E-value=1.2e-05 Score=74.65 Aligned_cols=50 Identities=20% Similarity=0.315 Sum_probs=41.7
Q ss_pred CccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 208 TFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 208 ~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+|++++|++.+++.+...+.. | ..+..|||+||+|+|||++|+++|+.+.
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-----------~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~ 51 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-----------N-RFSHAHIIVGEDGIGKSLLAKEIALKIL 51 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-----------C-CCCceEEeECCCCCCHHHHHHHHHHHHc
Confidence 689999999998888776531 2 3456899999999999999999999874
No 150
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.93 E-value=1.6e-05 Score=73.30 Aligned_cols=39 Identities=26% Similarity=0.494 Sum_probs=34.9
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhC------------------------CcEEEEecCCCCCc
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLK------------------------FNIYDMELTSVYCN 283 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~------------------------~~i~~l~~~~~~~~ 283 (288)
..+||+||||||||++|.++|+++. .+++.++.++....
T Consensus 25 halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~ 87 (325)
T COG0470 25 HALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKI 87 (325)
T ss_pred ceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCC
Confidence 3699999999999999999999998 68999998887664
No 151
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.90 E-value=2e-05 Score=82.53 Aligned_cols=66 Identities=17% Similarity=0.266 Sum_probs=49.9
Q ss_pred CCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh----------CCcEE
Q 045456 204 DHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL----------KFNIY 273 (288)
Q Consensus 204 ~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~ 273 (288)
-+|..++.++|.++..+++.+.+. . ..+.+.+|+||||||||++++.+|..+ +..++
T Consensus 181 ~r~~~ld~~iGr~~ei~~~i~~l~---r----------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~ 247 (852)
T TIGR03345 181 AREGKIDPVLGRDDEIRQMIDILL---R----------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLL 247 (852)
T ss_pred hcCCCCCcccCCHHHHHHHHHHHh---c----------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEE
Confidence 367899999998876554444332 1 224579999999999999999999986 36688
Q ss_pred EEecCCCCC
Q 045456 274 DMELTSVYC 282 (288)
Q Consensus 274 ~l~~~~~~~ 282 (288)
.++++.+..
T Consensus 248 ~l~l~~l~a 256 (852)
T TIGR03345 248 SLDLGLLQA 256 (852)
T ss_pred Eeehhhhhc
Confidence 888887653
No 152
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=97.89 E-value=1.3e-05 Score=73.28 Aligned_cols=68 Identities=31% Similarity=0.411 Sum_probs=50.1
Q ss_pred ccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhC--CcEEEEecCCCCCcc
Q 045456 209 FDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK--FNIYDMELTSVYCNS 284 (288)
Q Consensus 209 ~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~--~~i~~l~~~~~~~~~ 284 (288)
-+-++|+.+.++..--.++ .++.+ +-..|++||.||||||||.+|-+|+.+|| .||.-+.++++.++.
T Consensus 37 ~~g~vGQ~~AReAagiivd-lik~K-------kmaGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~E 106 (456)
T KOG1942|consen 37 AAGFVGQENAREAAGIIVD-LIKSK-------KMAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSNE 106 (456)
T ss_pred ccccccchhhhhhhhHHHH-HHHhh-------hccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhhh
Confidence 3456788877776322222 22222 12367899999999999999999999996 799999999988764
No 153
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=8.6e-06 Score=78.73 Aligned_cols=48 Identities=31% Similarity=0.494 Sum_probs=39.3
Q ss_pred CCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh
Q 045456 206 PATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 206 p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
...|.||.|++..|+.+..... | .+++||+||||||||++|+.+..-|
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA------------G---gHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA------------G---GHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh------------c---CCcEEEecCCCCchHHhhhhhcccC
Confidence 3489999999999998765433 2 4589999999999999999988654
No 154
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.88 E-value=7.6e-06 Score=70.14 Aligned_cols=37 Identities=32% Similarity=0.654 Sum_probs=29.2
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSV 280 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~ 280 (288)
..|++|+||||||||.+|.|||+++ |.+++.++.+++
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L 86 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDL 86 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCce
Confidence 5689999999999999999999876 788888877654
No 155
>PRK06921 hypothetical protein; Provisional
Probab=97.86 E-value=3.1e-05 Score=70.57 Aligned_cols=36 Identities=33% Similarity=0.552 Sum_probs=30.1
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHh----CCcEEEEecCC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYL----KFNIYDMELTS 279 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~~~~ 279 (288)
..+++|+||||||||.|+.|||+++ |..++.+...+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~ 156 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVE 156 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHH
Confidence 4689999999999999999999986 56777776543
No 156
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.85 E-value=2.9e-05 Score=72.26 Aligned_cols=58 Identities=22% Similarity=0.292 Sum_probs=43.6
Q ss_pred cChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEe
Q 045456 214 MDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDME 276 (288)
Q Consensus 214 ~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (288)
.+++.++.+.+.++..+.... -...+..+.|.|+||||||++++.+|..+|+++++++
T Consensus 108 l~~~~~~~~~~~l~~~~~~~~-----~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 108 ASPAQLARVRDALSGMLGAGR-----RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CCHHHHHHHHHHHHHHHhhhh-----hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 345566667776666554322 2344567999999999999999999999999999765
No 157
>PRK05642 DNA replication initiation factor; Validated
Probab=97.83 E-value=4.1e-05 Score=68.38 Aligned_cols=72 Identities=19% Similarity=0.239 Sum_probs=45.8
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELT 278 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 278 (288)
...+..+||+.+... .....+.+..+.... +-...+.++|+||+|||||.|+.|+++++ +..++.++..
T Consensus 11 ~~~~~~tfdnF~~~~--~~~a~~~~~~~~~~~------~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~ 82 (234)
T PRK05642 11 RLRDDATFANYYPGA--NAAALGYVERLCEAD------AGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA 82 (234)
T ss_pred CCCCcccccccCcCC--hHHHHHHHHHHhhcc------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHH
Confidence 344556899987433 233444444332211 11123678999999999999999999765 5677777766
Q ss_pred CCC
Q 045456 279 SVY 281 (288)
Q Consensus 279 ~~~ 281 (288)
++.
T Consensus 83 ~~~ 85 (234)
T PRK05642 83 ELL 85 (234)
T ss_pred HHH
Confidence 543
No 158
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.83 E-value=3.5e-05 Score=75.20 Aligned_cols=70 Identities=21% Similarity=0.335 Sum_probs=45.9
Q ss_pred CCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh-----CCcEEEEec
Q 045456 203 LDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL-----KFNIYDMEL 277 (288)
Q Consensus 203 ~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~~ 277 (288)
+.+..+|++.+..+..+. ....+..+...+ |. ..+.++||||||||||.|++|+|+++ +..++.++.
T Consensus 115 l~~~~tfd~fv~g~~n~~-a~~~~~~~~~~~------~~-~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~ 186 (450)
T PRK00149 115 LNPKYTFDNFVVGKSNRL-AHAAALAVAENP------GK-AYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS 186 (450)
T ss_pred CCCCCcccccccCCCcHH-HHHHHHHHHhCc------Cc-cCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 455569999764433222 333333333221 22 23569999999999999999999998 566888877
Q ss_pred CCC
Q 045456 278 TSV 280 (288)
Q Consensus 278 ~~~ 280 (288)
.++
T Consensus 187 ~~~ 189 (450)
T PRK00149 187 EKF 189 (450)
T ss_pred HHH
Confidence 654
No 159
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.82 E-value=3.8e-05 Score=73.89 Aligned_cols=70 Identities=20% Similarity=0.283 Sum_probs=44.7
Q ss_pred CCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh-----CCcEEEEec
Q 045456 203 LDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL-----KFNIYDMEL 277 (288)
Q Consensus 203 ~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~~ 277 (288)
+.+..+|++.+..+.. ......+..+...+ |. ...+++||||||||||.|++|+|+++ +..++.+++
T Consensus 103 l~~~~tfd~fi~g~~n-~~a~~~~~~~~~~~------~~-~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~ 174 (405)
T TIGR00362 103 LNPKYTFDNFVVGKSN-RLAHAAALAVAENP------GK-AYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS 174 (405)
T ss_pred CCCCCcccccccCCcH-HHHHHHHHHHHhCc------Cc-cCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH
Confidence 4445689995533322 22333333333221 21 23468999999999999999999988 577888876
Q ss_pred CCC
Q 045456 278 TSV 280 (288)
Q Consensus 278 ~~~ 280 (288)
.++
T Consensus 175 ~~~ 177 (405)
T TIGR00362 175 EKF 177 (405)
T ss_pred HHH
Confidence 553
No 160
>PRK08181 transposase; Validated
Probab=97.82 E-value=2.9e-05 Score=70.90 Aligned_cols=37 Identities=41% Similarity=0.607 Sum_probs=30.6
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSV 280 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~ 280 (288)
..+++|+||||||||.|+.|||+++ |+.++.++..++
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L 145 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDL 145 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHH
Confidence 4679999999999999999999765 677777766544
No 161
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.81 E-value=5.3e-05 Score=64.36 Aligned_cols=59 Identities=17% Similarity=0.115 Sum_probs=41.3
Q ss_pred ccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCCCC
Q 045456 213 AMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSVYC 282 (288)
Q Consensus 213 ~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~ 282 (288)
+|.+...+++.+.++.... .+..+|++|++||||+.+|++|.+.. +.||+.|+++.+..
T Consensus 2 iG~s~~m~~~~~~~~~~a~-----------~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~ 63 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAAS-----------SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPE 63 (168)
T ss_dssp S--SHHHHHHHHHHHHHTT-----------STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-H
T ss_pred EeCCHHHHHHHHHHHHHhC-----------CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhc
Confidence 4555555566665554432 24579999999999999999999976 46999999998743
No 162
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.80 E-value=3.1e-05 Score=81.34 Aligned_cols=65 Identities=18% Similarity=0.369 Sum_probs=49.9
Q ss_pred CCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh----------CCcEE
Q 045456 204 DHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL----------KFNIY 273 (288)
Q Consensus 204 ~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~ 273 (288)
-+|..++.++|.++..+.+.+.+.. ..+...+|+||||||||++++++|..+ +.+++
T Consensus 167 ~~~~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~ 233 (852)
T TIGR03346 167 AREGKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLL 233 (852)
T ss_pred hhCCCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEE
Confidence 4667899999988765554443321 235678999999999999999999986 78899
Q ss_pred EEecCCCC
Q 045456 274 DMELTSVY 281 (288)
Q Consensus 274 ~l~~~~~~ 281 (288)
.++++.+.
T Consensus 234 ~l~~~~l~ 241 (852)
T TIGR03346 234 ALDMGALI 241 (852)
T ss_pred EeeHHHHh
Confidence 99887764
No 163
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.80 E-value=3.5e-05 Score=72.33 Aligned_cols=36 Identities=25% Similarity=0.370 Sum_probs=31.8
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSV 280 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~ 280 (288)
.+++|+||||||||.|+.|||+++ |..++.++..++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l 222 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADEL 222 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHH
Confidence 689999999999999999999997 778888877654
No 164
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=97.78 E-value=2.1e-05 Score=74.29 Aligned_cols=50 Identities=32% Similarity=0.379 Sum_probs=41.5
Q ss_pred CCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 207 ATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 207 ~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-.|++|+|+++.|..|.-.+.. +...|+||.||+|||||++++++++.+.
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~-------------p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVID-------------PKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccC-------------CCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4899999999999888665443 2235899999999999999999988874
No 165
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.75 E-value=5.9e-05 Score=73.54 Aligned_cols=68 Identities=19% Similarity=0.385 Sum_probs=44.3
Q ss_pred CCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh-----CCcEEEEec
Q 045456 203 LDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL-----KFNIYDMEL 277 (288)
Q Consensus 203 ~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~~ 277 (288)
..+..+|++.+..+.... ....+..+...+ | +..+++||||||||||.|+.|+|+++ +..++.++.
T Consensus 98 l~~~~tFdnFv~g~~n~~-a~~~~~~~~~~~------~--~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 98 LNPDYTFENFVVGPGNSF-AYHAALEVAKNP------G--RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CCCCCcccccccCCchHH-HHHHHHHHHhCc------C--CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 445569999985443322 222333332221 2 23469999999999999999999986 456777776
Q ss_pred CC
Q 045456 278 TS 279 (288)
Q Consensus 278 ~~ 279 (288)
.+
T Consensus 169 ~~ 170 (440)
T PRK14088 169 EK 170 (440)
T ss_pred HH
Confidence 54
No 166
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.74 E-value=5.9e-05 Score=78.93 Aligned_cols=65 Identities=23% Similarity=0.349 Sum_probs=46.4
Q ss_pred cccccChhhhHHHHHHHHHHhhcHHHHHHhCCcc---cc-eeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCCCC
Q 045456 210 DKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVW---KR-GYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSVYC 282 (288)
Q Consensus 210 ~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~---~r-g~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~ 282 (288)
+.|+|+++..+.|.+.+.... .|... |. .+||+||||||||++|+++|+.+ +.+++.++.++...
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~--------~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~ 580 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRAR--------VGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYME 580 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHh--------hcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccc
Confidence 456677777777766654321 22211 22 38899999999999999999998 46899998877644
No 167
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.73 E-value=5.1e-05 Score=79.57 Aligned_cols=66 Identities=21% Similarity=0.347 Sum_probs=48.1
Q ss_pred cccccChhhhHHHHHHHHHHhhcHHHHHHhCCc---ccce-eEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCCCC
Q 045456 210 DKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKV---WKRG-YLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSVYC 282 (288)
Q Consensus 210 ~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~---~~rg-~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~ 282 (288)
..|+|+++..+.|.+.+..... |+. .+.| +||+||||||||.+|+++|..+ +..++.++.++...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~--------gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~ 637 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARA--------GLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQE 637 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhc--------CCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhh
Confidence 4567777777777776654321 221 2344 7899999999999999999999 45788998877654
Q ss_pred c
Q 045456 283 N 283 (288)
Q Consensus 283 ~ 283 (288)
.
T Consensus 638 ~ 638 (852)
T TIGR03345 638 A 638 (852)
T ss_pred h
Confidence 3
No 168
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.72 E-value=4e-05 Score=74.38 Aligned_cols=27 Identities=37% Similarity=0.608 Sum_probs=24.5
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
++.++|+||||||||++|+++|..++.
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 568999999999999999999998853
No 169
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.70 E-value=4.6e-05 Score=77.11 Aligned_cols=50 Identities=32% Similarity=0.401 Sum_probs=41.0
Q ss_pred CCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 207 ATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 207 ~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
.-+++++|+++.++.+...+.. +++++|+||||||||++++++|+.++.+
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 5788999988887766665441 2489999999999999999999999755
No 170
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.69 E-value=4.8e-05 Score=77.11 Aligned_cols=53 Identities=26% Similarity=0.330 Sum_probs=43.1
Q ss_pred CCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 203 LDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 203 ~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
..+|..|++++++++.++.|...+.. ++.++|+||||||||++++++|..+..
T Consensus 24 ~~~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 24 EVPERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred ccCcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 34578999999999888877664442 247999999999999999999998864
No 171
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.67 E-value=5.8e-05 Score=70.41 Aligned_cols=51 Identities=18% Similarity=0.259 Sum_probs=42.6
Q ss_pred CccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 208 TFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 208 ~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
.|++|+|++++++.+...+.. | ..+..+||+||+|+||+++|.++|+.+-.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc 52 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------N-RIAPAYLFAGPEGVGRKLAALCFIEGLLS 52 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 589999999999988886653 2 23568999999999999999999998743
No 172
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.67 E-value=0.00022 Score=68.67 Aligned_cols=103 Identities=18% Similarity=0.296 Sum_probs=63.9
Q ss_pred cceEEEEEeccchhhHHHHhhhhHHHHHHHHHHh-------cc------ceeEEEEecCCCCCCCCCCCCCccCCCCC--
Q 045456 142 AERVIELSFPKKYMERILNIYLPYVMEKSNAIKE-------QN------KVVKLYAVGHFGGDSDRGGAWGSTNLDHP-- 206 (288)
Q Consensus 142 ~~r~~eL~f~~~~r~~vl~syl~~Il~~~~~i~~-------~~------~~~kl~~~~~~~~~~~~~~~w~~~~~~~p-- 206 (288)
+.....|.=..-.++ -|+.+...|++.|+.... .+ +..+|-...+. -...|+-. -.+|
T Consensus 170 ~~k~v~l~d~pl~~~-ele~ia~eIi~~a~~~~~sfIEi~r~GatVvQlrn~RIvIarPP-----fSd~~EIT-avRPvv 242 (604)
T COG1855 170 EWKLVRLSDKPLTRE-ELEEIAREIIERAKRDPDSFIEIDRPGATVVQLRNYRIVIARPP-----FSDRWEIT-AVRPVV 242 (604)
T ss_pred cEEEEEcCCccCCHH-HHHHHHHHHHHHHhhCcCceEEEccCCceEEEeccEEEEEecCC-----CCCceEEE-EEeeeE
Confidence 455555543333333 466677778877765321 11 11122222221 12356532 2233
Q ss_pred -CCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 207 -ATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 207 -~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
.+++|..+.+.+++++.+ -.+|+|+-||||.||||+|+|+|..+.
T Consensus 243 k~~ledY~L~dkl~eRL~e------------------raeGILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 243 KLSLEDYGLSDKLKERLEE------------------RAEGILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred EechhhcCCCHHHHHHHHh------------------hhcceEEecCCCCChhHHHHHHHHHHH
Confidence 489999998888887765 246999999999999999999999874
No 173
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.67 E-value=8.1e-05 Score=78.19 Aligned_cols=66 Identities=20% Similarity=0.368 Sum_probs=47.8
Q ss_pred ccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcc---c-ceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCCC
Q 045456 209 FDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVW---K-RGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSVY 281 (288)
Q Consensus 209 ~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~---~-rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~ 281 (288)
.+.|+|++...+.|.+.+..... |... + ..+||+||||||||++|++||+.+ +.+++.++.++..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~--------gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~ 638 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRA--------GLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFM 638 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHh--------cccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhh
Confidence 45677888877777777664321 2211 2 248899999999999999999987 4578888887654
Q ss_pred C
Q 045456 282 C 282 (288)
Q Consensus 282 ~ 282 (288)
.
T Consensus 639 ~ 639 (857)
T PRK10865 639 E 639 (857)
T ss_pred h
Confidence 3
No 174
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.63 E-value=0.00011 Score=77.15 Aligned_cols=66 Identities=21% Similarity=0.386 Sum_probs=48.5
Q ss_pred cccccChhhhHHHHHHHHHHhhcHHHHHHhCCc----ccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCCCC
Q 045456 210 DKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKV----WKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSVYC 282 (288)
Q Consensus 210 ~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~----~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~ 282 (288)
..|+|++...+.|.+.+..... |.. +...+||+||||||||.+|++||..+ +.+++.++.++...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~--------gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~ 636 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRA--------GLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME 636 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhc--------cCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcc
Confidence 4577888877777776664321 221 12348899999999999999999988 56899999887654
Q ss_pred c
Q 045456 283 N 283 (288)
Q Consensus 283 ~ 283 (288)
.
T Consensus 637 ~ 637 (852)
T TIGR03346 637 K 637 (852)
T ss_pred c
Confidence 3
No 175
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=97.62 E-value=3.5e-05 Score=71.14 Aligned_cols=60 Identities=25% Similarity=0.382 Sum_probs=45.6
Q ss_pred CCCCccCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 196 GAWGSTNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 196 ~~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
-.| ++.++|.+++++++.++....+.+ | . +.+--...|+|||||||||+.+.|.|..+-.
T Consensus 29 ~pw--vekyrP~~l~dv~~~~ei~st~~~----~-------~--~~~~lPh~L~YgPPGtGktsti~a~a~~ly~ 88 (360)
T KOG0990|consen 29 QPW--VEKYRPPFLGIVIKQEPIWSTENR----Y-------S--GMPGLPHLLFYGPPGTGKTSTILANARDFYS 88 (360)
T ss_pred CCC--ccCCCCchhhhHhcCCchhhHHHH----h-------c--cCCCCCcccccCCCCCCCCCchhhhhhhhcC
Confidence 457 579999999999998876555443 2 1 1222238999999999999999999998754
No 176
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.62 E-value=0.00014 Score=72.41 Aligned_cols=65 Identities=18% Similarity=0.185 Sum_probs=53.6
Q ss_pred CCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCCC
Q 045456 206 PATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSVY 281 (288)
Q Consensus 206 p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~ 281 (288)
..++++++|.+...+++.+.++.... ....+||+|++||||+++|++|.... +.||+.+++..+.
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a~-----------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVAR-----------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHhC-----------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 35889999999888888887776442 23469999999999999999999885 5699999998774
No 177
>PHA00729 NTP-binding motif containing protein
Probab=97.61 E-value=4.1e-05 Score=67.98 Aligned_cols=28 Identities=21% Similarity=0.469 Sum_probs=24.4
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhCCcE
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLKFNI 272 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i 272 (288)
..++++||||||||++|.+||+.++..+
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l 45 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKL 45 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 3799999999999999999999986433
No 178
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.60 E-value=0.0001 Score=71.90 Aligned_cols=73 Identities=27% Similarity=0.334 Sum_probs=44.5
Q ss_pred CCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCC
Q 045456 203 LDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTS 279 (288)
Q Consensus 203 ~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~ 279 (288)
+.+..+||+.+..+.-+ .....+..+..... ..-| ...++++||||||+|||+|++|+|+++ +..++.++..+
T Consensus 104 l~~~~tFdnFv~g~~N~-~a~~~a~~~a~~~~--~~~~-~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~ 179 (445)
T PRK12422 104 LDPLMTFANFLVTPEND-LPHRILQEFTKVSE--QGKG-FPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSEL 179 (445)
T ss_pred CCccccccceeeCCcHH-HHHHHHHHHHhccc--cccC-CCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHH
Confidence 34456899997543322 22222332221110 0001 123579999999999999999999987 57787777643
No 179
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=97.59 E-value=0.00014 Score=72.44 Aligned_cols=65 Identities=11% Similarity=0.117 Sum_probs=53.4
Q ss_pred CCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHH-----------hCCcEEEE
Q 045456 207 ATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANY-----------LKFNIYDM 275 (288)
Q Consensus 207 ~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~-----------l~~~i~~l 275 (288)
.+|++++|.+...+.+.+.+..+-.. ...+|++|++||||+.+|++|.+. -+.||+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s-----------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARS-----------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 47999999998888887777654432 346999999999999999999987 46799999
Q ss_pred ecCCCCC
Q 045456 276 ELTSVYC 282 (288)
Q Consensus 276 ~~~~~~~ 282 (288)
+++.+..
T Consensus 285 nCaal~e 291 (538)
T PRK15424 285 NCGAIAE 291 (538)
T ss_pred ecccCCh
Confidence 9988753
No 180
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=5.3e-05 Score=76.77 Aligned_cols=41 Identities=29% Similarity=0.616 Sum_probs=37.2
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCCcc
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYCNS 284 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~ 284 (288)
.-.+||+|+||||||+++++.|.++|.+++.++..++.+.+
T Consensus 431 ~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s 471 (953)
T KOG0736|consen 431 NPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAES 471 (953)
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcc
Confidence 34599999999999999999999999999999998887764
No 181
>PRK08727 hypothetical protein; Validated
Probab=97.58 E-value=0.00015 Score=64.63 Aligned_cols=65 Identities=23% Similarity=0.273 Sum_probs=40.6
Q ss_pred CCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCC
Q 045456 203 LDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTS 279 (288)
Q Consensus 203 ~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~ 279 (288)
.....+|++.++.+.- .+ ..+..... |. ....++|+||+|||||.++.|+++++ |..+..++..+
T Consensus 12 ~~~~~~f~~f~~~~~n--~~-~~~~~~~~--------~~-~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~ 79 (233)
T PRK08727 12 YPSDQRFDSYIAAPDG--LL-AQLQALAA--------GQ-SSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA 79 (233)
T ss_pred CCCcCChhhccCCcHH--HH-HHHHHHHh--------cc-CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH
Confidence 3445689999865542 11 11111111 21 23459999999999999999997775 55556665544
No 182
>PRK06526 transposase; Provisional
Probab=97.55 E-value=5.7e-05 Score=68.38 Aligned_cols=35 Identities=26% Similarity=0.452 Sum_probs=28.0
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELT 278 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 278 (288)
+.+++|+||||||||.++.+|+.++ |..++.++.+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~ 135 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAA 135 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHH
Confidence 4689999999999999999999875 5565554443
No 183
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.54 E-value=4.1e-05 Score=61.03 Aligned_cols=37 Identities=32% Similarity=0.529 Sum_probs=29.6
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh--------CCcEEEEecCCCC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL--------KFNIYDMELTSVY 281 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l--------~~~i~~l~~~~~~ 281 (288)
+.++++||||+|||++++.++..+ ..+++.++++...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR 49 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC
Confidence 458899999999999999999998 7888888776554
No 184
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.52 E-value=0.00012 Score=68.68 Aligned_cols=51 Identities=22% Similarity=0.376 Sum_probs=39.4
Q ss_pred Ccccccc-ChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 208 TFDKIAM-DPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 208 ~~~~l~~-~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
.|++|.| ++.+.+.+...+.. | ..+..+||+||+|+||+++|+++|+.+..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-----------~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c 54 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-----------N-RLSHAYLFEGAKGTGKKATALWLAKSLFC 54 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHCC
Confidence 4778887 77777777665441 2 24668999999999999999999998743
No 185
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.52 E-value=8.4e-05 Score=64.49 Aligned_cols=22 Identities=45% Similarity=0.828 Sum_probs=17.6
Q ss_pred eEEEcCCCCChHHHHHHHHHHh
Q 045456 247 YLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l 268 (288)
.++.||||||||+++..++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 7889999999998777777666
No 186
>PRK09087 hypothetical protein; Validated
Probab=97.52 E-value=0.00024 Score=63.17 Aligned_cols=62 Identities=18% Similarity=0.175 Sum_probs=39.4
Q ss_pred CCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEE
Q 045456 203 LDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDM 275 (288)
Q Consensus 203 ~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (288)
..++.+|++++..+.-.. +...+..+. + ...+.++|+||+|||||+|++++++..+..++..
T Consensus 14 ~~~~~~~~~Fi~~~~N~~-a~~~l~~~~---------~-~~~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~ 75 (226)
T PRK09087 14 HDPAYGRDDLLVTESNRA-AVSLVDHWP---------N-WPSPVVVLAGPVGSGKTHLASIWREKSDALLIHP 75 (226)
T ss_pred CCCCCChhceeecCchHH-HHHHHHhcc---------c-CCCCeEEEECCCCCCHHHHHHHHHHhcCCEEecH
Confidence 344568999986332222 223222211 1 1123489999999999999999998887765554
No 187
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=97.52 E-value=0.00011 Score=69.30 Aligned_cols=48 Identities=31% Similarity=0.391 Sum_probs=38.5
Q ss_pred CccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh
Q 045456 208 TFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 208 ~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
.|..|+|+++.|..+.-.+.. +...+++|.||||+|||++++++++.+
T Consensus 2 pf~~ivgq~~~~~al~~~~~~-------------~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVID-------------PKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred CccccccHHHHHHHHHHHhcC-------------CCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 478899999998877554332 113479999999999999999999888
No 188
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.51 E-value=7.3e-05 Score=58.52 Aligned_cols=23 Identities=43% Similarity=0.807 Sum_probs=20.6
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+.|+||||+|||++|..+|..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999887775
No 189
>PHA02774 E1; Provisional
Probab=97.51 E-value=0.0002 Score=71.28 Aligned_cols=37 Identities=30% Similarity=0.566 Sum_probs=30.4
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEE-Ee
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYD-ME 276 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~-l~ 276 (288)
|+|.++.++|+||||||||.+|.+|++.++-.++. ++
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN 467 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVN 467 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEE
Confidence 56656789999999999999999999999755544 55
No 190
>PRK09183 transposase/IS protein; Provisional
Probab=97.50 E-value=8e-05 Score=67.58 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=29.7
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSV 280 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~ 280 (288)
..+++|+||||||||+++.+|+..+ |..+..++..++
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l 141 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADL 141 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHH
Confidence 4579999999999999999998664 777777765543
No 191
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.49 E-value=0.00027 Score=66.20 Aligned_cols=63 Identities=13% Similarity=0.220 Sum_probs=50.5
Q ss_pred CccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCCC
Q 045456 208 TFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSVY 281 (288)
Q Consensus 208 ~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~ 281 (288)
-+++++|.+...+.+.+.+..... ....+|+.|++||||+++|++|.... +.|++.+++..+.
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~-----------~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~ 69 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAP-----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN 69 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCC
Confidence 467788888888888777776442 23469999999999999999998765 3699999999874
No 192
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.48 E-value=1.2e-05 Score=86.64 Aligned_cols=208 Identities=15% Similarity=0.195 Sum_probs=129.0
Q ss_pred cChHHHHHHHHhhhccCCCcCceEEeec------CC------------------------CCceEEecCCCCeEEeccCC
Q 045456 71 INQLYEASELYLSTKITASLEKLKVSKT------TK------------------------EKNLSVTINKGEKISDIFEG 120 (288)
Q Consensus 71 ~N~ly~a~~~YL~~~~~~~~~rL~~~~~------~~------------------------~~~~~l~~~~ge~v~D~F~G 120 (288)
+|+-...+|.|++|-++.++..|..-.+ .+ +++-.+-++.-++|+-...
T Consensus 920 NNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp- 998 (4600)
T COG5271 920 NNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGYWIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHP- 998 (4600)
T ss_pred cCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCcEEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCC-
Confidence 7999999999999998877665443111 11 3444555666677665543
Q ss_pred eeEEEEEeeeccccccccC------CCcceEEEEEeccc----------hhhHHHHhhhhHHHHHHHHHHhccceeEEEE
Q 045456 121 ICLVWEMTCKETEERSSQR------GKAERVIELSFPKK----------YMERILNIYLPYVMEKSNAIKEQNKVVKLYA 184 (288)
Q Consensus 121 v~~~W~~~~~~~~~~~~~~------~~~~r~~eL~f~~~----------~r~~vl~syl~~Il~~~~~i~~~~~~~kl~~ 184 (288)
.+.++.++|..+.+++ +...|.+|+.|..- .|-++-.||...|++..+++..++..-+||.
T Consensus 999 ---~F~lFATQNppg~YgGRK~LSrAFRNRFlE~hFddipedEle~ILh~rc~iapSyakKiVeVyr~Ls~rRs~~rife 1075 (4600)
T COG5271 999 ---NFRLFATQNPPGGYGGRKGLSRAFRNRFLEMHFDDIPEDELEEILHGRCEIAPSYAKKIVEVYRGLSSRRSINRIFE 1075 (4600)
T ss_pred ---CeeEEeecCCCccccchHHHHHHHHhhhHhhhcccCcHHHHHHHHhccCccCHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4667888877655442 33678999999662 2334667899999999999887777766777
Q ss_pred ecCCCCCCCCCCCCCccCCCCCCCccccccC-----------hhhhHHHHHHHHHHhh----cHHHH--------HHhCC
Q 045456 185 VGHFGGDSDRGGAWGSTNLDHPATFDKIAMD-----------PSMKQASIDDLDRFVK----RRNFY--------RRVGK 241 (288)
Q Consensus 185 ~~~~~~~~~~~~~w~~~~~~~p~~~~~l~~~-----------~~~k~~i~~~l~~~~~----~~~~~--------~~~g~ 241 (288)
...+.....+--+|. ...+..++.|+.. .+.|-.+.+.++.-++ ...+| +.+|.
T Consensus 1076 qknsfaTLRDLFrWa---~R~avgy~qla~~GymllaER~R~~~dkv~V~~v~ekvmkvk~d~d~~y~smed~slkel~~ 1152 (4600)
T COG5271 1076 QKNSFATLRDLFRWA---GRIAVGYDQLAFLGYMLLAERQRELEDKVRVGQVFEKVMKVKSDEDYKYDSMEDISLKELSK 1152 (4600)
T ss_pred hhhhHHHHHHHHHHh---ccccchHHHHHHhhHHHHHHHhcCHHhhhhHHHHHHHHHhhhhcchhhhhhHhhhhHHhhhh
Confidence 654433222223563 5556667766532 1222223333322221 11222 11111
Q ss_pred -cc-----------------cceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCCccc
Q 045456 242 -VW-----------------KRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYCNSE 285 (288)
Q Consensus 242 -~~-----------------~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~ 285 (288)
.| ++.+||.|..|||||+.+..+|..++..+..+++..-..+.|
T Consensus 1153 v~wt~~m~rl~~lv~~Cl~~kepvlLVgetgcgktt~cqvLa~~~~rel~~~nahq~Te~gd 1214 (4600)
T COG5271 1153 VVWTEPMCRLERLVGKCLVTKEPVLLVGETGCGKTTGCQVLADTFRRELNLMNAHQETENGD 1214 (4600)
T ss_pred cccccchhhhhhHHHHhhcccCceEEEeecCcchhHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 12 344999999999999999999998888777776655544443
No 193
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.48 E-value=0.00015 Score=71.06 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=23.8
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
...+||.||||||||++|+++|...+.
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhcc
Confidence 456999999999999999999998753
No 194
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.47 E-value=0.00014 Score=75.18 Aligned_cols=61 Identities=25% Similarity=0.367 Sum_probs=44.3
Q ss_pred CccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh----------CCcEEEEec
Q 045456 208 TFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL----------KFNIYDMEL 277 (288)
Q Consensus 208 ~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~~l~~ 277 (288)
.++.++|.++..+.+.+.+.. ..+..+||+||||||||++++++|... +..++.+++
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 566777777666666554332 124578999999999999999999874 667777776
Q ss_pred CCCC
Q 045456 278 TSVY 281 (288)
Q Consensus 278 ~~~~ 281 (288)
+.+.
T Consensus 251 ~~ll 254 (758)
T PRK11034 251 GSLL 254 (758)
T ss_pred HHHh
Confidence 6554
No 195
>PRK06547 hypothetical protein; Provisional
Probab=97.45 E-value=0.00019 Score=61.19 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=29.2
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCCcEEEEe
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKFNIYDME 276 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (288)
+.-+++.||+|+|||++++.+|+.++.+++.++
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 456888999999999999999999999888765
No 196
>PF13245 AAA_19: Part of AAA domain
Probab=97.45 E-value=0.00023 Score=52.45 Aligned_cols=32 Identities=38% Similarity=0.664 Sum_probs=22.8
Q ss_pred eEEEcCCCCChH-HHHHHHHHHh------CCcEEEEecC
Q 045456 247 YLLFGPPGTGKS-SLIAAMANYL------KFNIYDMELT 278 (288)
Q Consensus 247 ~LL~GPpGtGKT-sla~aiA~~l------~~~i~~l~~~ 278 (288)
+++.|||||||| +++.+++..+ +..+..+..+
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 455999999999 5566666666 5567766544
No 197
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.44 E-value=7.4e-05 Score=62.94 Aligned_cols=37 Identities=30% Similarity=0.481 Sum_probs=25.9
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCCc---EEEEecCCC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKFN---IYDMELTSV 280 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~---i~~l~~~~~ 280 (288)
++.++++||||+|||++++++...+..+ ++.++....
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 4679999999999999999988887655 666665544
No 198
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.41 E-value=0.00044 Score=65.06 Aligned_cols=67 Identities=25% Similarity=0.342 Sum_probs=48.9
Q ss_pred cc-ccccChhhhHHHHHHHHHHhhcHHHHHHhCCc-ccceeEEEcCCCCChHHHHHHHHHHh-CCcEEEEecCCCCCc
Q 045456 209 FD-KIAMDPSMKQASIDDLDRFVKRRNFYRRVGKV-WKRGYLLFGPPGTGKSSLIAAMANYL-KFNIYDMELTSVYCN 283 (288)
Q Consensus 209 ~~-~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~-~~rg~LL~GPpGtGKTsla~aiA~~l-~~~i~~l~~~~~~~~ 283 (288)
|+ ++.|.++..++|...+...-. |.. -++-++|.||+|+|||++++.+-+.+ .+++|.+..+-+...
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~--------g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~ 128 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQ--------GLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEE 128 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHh--------ccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccC
Confidence 44 888888888877765543222 333 35567899999999999999999887 478998866655544
No 199
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=97.40 E-value=0.00031 Score=69.92 Aligned_cols=66 Identities=14% Similarity=0.202 Sum_probs=53.8
Q ss_pred CCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCCCC
Q 045456 206 PATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSVYC 282 (288)
Q Consensus 206 p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~ 282 (288)
..+|++++|.....+.+.+.+..+... ...+|+.|++||||+.+|++|.+.. +.||+.+++..+..
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~~-----------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e 276 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYARS-----------DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE 276 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh
Confidence 357999999998888888777654432 3469999999999999999999764 57999999987753
No 200
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00016 Score=69.24 Aligned_cols=39 Identities=31% Similarity=0.449 Sum_probs=36.2
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYC 282 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~ 282 (288)
+.++||.||+|+|||.||+-+|+-++.||...+++.++-
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQ 264 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQ 264 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhh
Confidence 457999999999999999999999999999999998764
No 201
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=97.40 E-value=0.00039 Score=70.82 Aligned_cols=65 Identities=23% Similarity=0.149 Sum_probs=50.9
Q ss_pred CCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhC---CcEEEEecCCCCC
Q 045456 207 ATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK---FNIYDMELTSVYC 282 (288)
Q Consensus 207 ~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~---~~i~~l~~~~~~~ 282 (288)
.+|++++|.+...+++.+.+...... ...+||+|++||||+.+|++|.+... .||+.+++..+..
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~-----------~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKS-----------SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCc-----------CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 36888888887777776666654421 34599999999999999999998754 6999999987753
No 202
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.38 E-value=0.00036 Score=71.70 Aligned_cols=64 Identities=17% Similarity=0.289 Sum_probs=52.7
Q ss_pred CCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCCC
Q 045456 207 ATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSVY 281 (288)
Q Consensus 207 ~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~ 281 (288)
.+|++++|.+...+.+.+.++..... ...+|+.|+||||||++|++|.... +.|++.+++..+.
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~-----------~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~ 439 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQS-----------DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMP 439 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCC
Confidence 47889999998888888877764422 3469999999999999999999865 5799999998764
No 203
>PLN02200 adenylate kinase family protein
Probab=97.37 E-value=0.00022 Score=63.82 Aligned_cols=30 Identities=20% Similarity=0.380 Sum_probs=25.9
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhCCcEEE
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLKFNIYD 274 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (288)
.-+++.||||+|||++|+.||..+|++.+.
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~~~g~~his 73 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVETFGFKHLS 73 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCeEEE
Confidence 347889999999999999999999986543
No 204
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.37 E-value=0.00028 Score=68.97 Aligned_cols=67 Identities=21% Similarity=0.388 Sum_probs=43.5
Q ss_pred CCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh-----CCcEEEEecCCC
Q 045456 206 PATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL-----KFNIYDMELTSV 280 (288)
Q Consensus 206 p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~~~~~ 280 (288)
+.+|++++..+.- +.....+..+...+ |.. ..+++||||+|||||.|++|+++++ +..++.++..++
T Consensus 111 ~~tFdnFv~g~~n-~~A~~aa~~~a~~~------~~~-~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f 182 (450)
T PRK14087 111 ENTFENFVIGSSN-EQAFIAVQTVSKNP------GIS-YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEF 182 (450)
T ss_pred ccchhcccCCCcH-HHHHHHHHHHHhCc------Ccc-cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 4689998755433 22333343333221 222 3569999999999999999999965 466777766543
No 205
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=97.36 E-value=0.00025 Score=72.16 Aligned_cols=48 Identities=27% Similarity=0.286 Sum_probs=37.2
Q ss_pred CccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh
Q 045456 208 TFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 208 ~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
.|.+|+|+++++..+.-.... +-..|+||.||||||||++|++|++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av~-------------~~~g~vli~G~~GtgKs~lar~l~~~l 49 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVD-------------PRIGGVLIRGEKGTAKSTAARGLAALL 49 (633)
T ss_pred CcchhcChHHHHHHHHHHhhC-------------CCCCeEEEEcCCCCcHHHHHHHHHHhC
Confidence 478999998888665443221 112479999999999999999999998
No 206
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.35 E-value=0.00041 Score=61.35 Aligned_cols=67 Identities=22% Similarity=0.349 Sum_probs=40.3
Q ss_pred CCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh-----CCcEEEEecCC
Q 045456 205 HPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL-----KFNIYDMELTS 279 (288)
Q Consensus 205 ~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~~~~ 279 (288)
+.-||++.+-.+.- +.....+......+ +. ....++||||+|+|||.|..||++++ +..+..+++.+
T Consensus 3 ~~~tFdnfv~g~~N-~~a~~~~~~ia~~~------~~-~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~ 74 (219)
T PF00308_consen 3 PKYTFDNFVVGESN-ELAYAAAKAIAENP------GE-RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEE 74 (219)
T ss_dssp TT-SCCCS--TTTT-HHHHHHHHHHHHST------TT-SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHH
T ss_pred CCCccccCCcCCcH-HHHHHHHHHHHhcC------CC-CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHH
Confidence 34589998754432 23333344333321 21 22358999999999999999999875 45677776543
No 207
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.35 E-value=0.00034 Score=50.36 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=20.3
Q ss_pred eEEEcCCCCChHHHHHHHHHHh
Q 045456 247 YLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l 268 (288)
+.+.|+||+|||++++++++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999996
No 208
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.35 E-value=0.00056 Score=71.08 Aligned_cols=38 Identities=26% Similarity=0.494 Sum_probs=29.7
Q ss_pred eeEEEcCCCCChHHHHHHHHHHh----------CCcEEEEecCCCCCc
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYL----------KFNIYDMELTSVYCN 283 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l----------~~~i~~l~~~~~~~~ 283 (288)
.++++||||||||.+++.+.++| .+.++.|++..+.+.
T Consensus 783 vLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp 830 (1164)
T PTZ00112 783 ILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHP 830 (1164)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCH
Confidence 35699999999999999998877 255778887665443
No 209
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.00022 Score=73.19 Aligned_cols=66 Identities=23% Similarity=0.366 Sum_probs=49.6
Q ss_pred cccccChhhhHHHHHHHHHHhhcHHHHHHhCCccc----ceeEEEcCCCCChHHHHHHHHHHhC---CcEEEEecCCCCC
Q 045456 210 DKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWK----RGYLLFGPPGTGKSSLIAAMANYLK---FNIYDMELTSVYC 282 (288)
Q Consensus 210 ~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~----rg~LL~GPpGtGKTsla~aiA~~l~---~~i~~l~~~~~~~ 282 (288)
..|+|+++..+.|.+.+.. .+.|+.-+ ..+||.||+|+|||-+|+++|..|. -.++.++.|+.+.
T Consensus 491 ~rViGQd~AV~avs~aIrr--------aRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRR--------ARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYME 562 (786)
T ss_pred cceeChHHHHHHHHHHHHH--------HhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHH
Confidence 3456777777777776664 23344322 2378899999999999999999997 8999999988765
Q ss_pred c
Q 045456 283 N 283 (288)
Q Consensus 283 ~ 283 (288)
+
T Consensus 563 k 563 (786)
T COG0542 563 K 563 (786)
T ss_pred H
Confidence 5
No 210
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00055 Score=65.19 Aligned_cols=62 Identities=13% Similarity=0.198 Sum_probs=46.3
Q ss_pred cccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCc-----EEEEecCCCCC
Q 045456 212 IAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFN-----IYDMELTSVYC 282 (288)
Q Consensus 212 l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~-----i~~l~~~~~~~ 282 (288)
+..-+++.+.+...+..++.. ..+..+++|||||||||.+++-+++++.-+ ++.||+-...+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~---------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t 85 (366)
T COG1474 19 LPHREEEINQLASFLAPALRG---------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRT 85 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcC---------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCC
Confidence 666677777777766655543 224459999999999999999999999665 78888766554
No 211
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.27 E-value=0.00061 Score=67.81 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=50.7
Q ss_pred CCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCCCC
Q 045456 206 PATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSVYC 282 (288)
Q Consensus 206 p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~ 282 (288)
..+|++++|.+...+.+.+.+..... ....+||+|++||||+.+|++|.... +.||+.+++..+..
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A~-----------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLAM-----------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 34899999988877777666654332 13459999999999999999997664 36899999988753
No 212
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.26 E-value=0.00044 Score=69.61 Aligned_cols=71 Identities=18% Similarity=0.264 Sum_probs=45.1
Q ss_pred CCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh-----CCcEEEEec
Q 045456 203 LDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL-----KFNIYDMEL 277 (288)
Q Consensus 203 ~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~~ 277 (288)
+....+|++++..+.-. .....+...... .+. +...++|||++|||||.|+.|||+++ ++.++.++.
T Consensus 281 L~~~~TFDnFvvG~sN~-~A~aaa~avae~------~~~-~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita 352 (617)
T PRK14086 281 LNPKYTFDTFVIGASNR-FAHAAAVAVAEA------PAK-AYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS 352 (617)
T ss_pred CCCCCCHhhhcCCCccH-HHHHHHHHHHhC------ccc-cCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 34446899987554322 122222222221 122 22458999999999999999999987 567788877
Q ss_pred CCCC
Q 045456 278 TSVY 281 (288)
Q Consensus 278 ~~~~ 281 (288)
.++.
T Consensus 353 eef~ 356 (617)
T PRK14086 353 EEFT 356 (617)
T ss_pred HHHH
Confidence 6543
No 213
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.26 E-value=0.00073 Score=63.45 Aligned_cols=58 Identities=17% Similarity=0.261 Sum_probs=42.2
Q ss_pred ccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhC---CcEEEEecCCCC
Q 045456 213 AMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK---FNIYDMELTSVY 281 (288)
Q Consensus 213 ~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~---~~i~~l~~~~~~ 281 (288)
+|.....+.+.+.+..... ....+||.|++||||+++|++|..... .||+.|+++.+.
T Consensus 2 iG~S~~m~~~~~~~~~~a~-----------~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~ 62 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAP-----------LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALS 62 (329)
T ss_pred CcCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCC
Confidence 4445555555555554332 244699999999999999999987654 699999998764
No 214
>PLN02199 shikimate kinase
Probab=97.24 E-value=0.0003 Score=64.84 Aligned_cols=34 Identities=26% Similarity=0.503 Sum_probs=31.2
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCCcEEEEec
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMEL 277 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~ 277 (288)
.+.++|.|++|||||++++.+|+.+|+++++.+.
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~ 135 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDT 135 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHH
Confidence 4579999999999999999999999999998763
No 215
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.22 E-value=0.00078 Score=66.88 Aligned_cols=64 Identities=11% Similarity=0.099 Sum_probs=52.1
Q ss_pred CccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCCCC
Q 045456 208 TFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSVYC 282 (288)
Q Consensus 208 ~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~ 282 (288)
.+++++|.....+.+.+.+..... ....+||+|++||||+.+|++|.... +.|++.+++..+.+
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~-----------~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~ 251 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAA-----------SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPE 251 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCCh
Confidence 567899998888888887776432 24569999999999999999999875 47999999988753
No 216
>PF13173 AAA_14: AAA domain
Probab=97.22 E-value=0.00045 Score=55.58 Aligned_cols=38 Identities=29% Similarity=0.407 Sum_probs=32.0
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhC--CcEEEEecCCCCC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLK--FNIYDMELTSVYC 282 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~--~~i~~l~~~~~~~ 282 (288)
+-++|+||.|||||++++.+++.+. ..+..+++.+...
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~ 42 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRD 42 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHH
Confidence 4578999999999999999999887 7888888776543
No 217
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.21 E-value=0.00029 Score=62.91 Aligned_cols=42 Identities=26% Similarity=0.272 Sum_probs=34.5
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCCccc
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYCNSE 285 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~ 285 (288)
..|-.++||+|||||.+++++|+.+|.+++.++.++-.+-..
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~ 73 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQS 73 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHH
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHH
Confidence 457789999999999999999999999999999988766443
No 218
>PRK06696 uridine kinase; Validated
Probab=97.20 E-value=0.001 Score=58.70 Aligned_cols=37 Identities=11% Similarity=0.150 Sum_probs=30.7
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCCC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSVY 281 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~ 281 (288)
.-+.+.|+||+||||+|+.||..| |.+++.++..+..
T Consensus 23 ~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 23 LRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 346789999999999999999999 7788887765553
No 219
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.11 E-value=0.00057 Score=55.91 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=24.3
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
.-++|.|+.|+|||++++++++.+|.+
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 347899999999999999999999864
No 220
>PLN02674 adenylate kinase
Probab=97.10 E-value=0.00054 Score=61.67 Aligned_cols=32 Identities=22% Similarity=0.455 Sum_probs=27.3
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCCcEEEE
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKFNIYDM 275 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (288)
...++|.||||+||+|.++.||..+|++.+..
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his~ 62 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLAT 62 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEch
Confidence 34589999999999999999999999766543
No 221
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.07 E-value=0.001 Score=58.23 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=31.5
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~ 279 (288)
|++..+-++++||||+|||+++..+|.++ |.+++.++...
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~ 57 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG 57 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 56555558899999999999999998765 56777776643
No 222
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.06 E-value=0.0012 Score=55.70 Aligned_cols=27 Identities=37% Similarity=0.596 Sum_probs=23.1
Q ss_pred ccceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 243 WKRGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
.+..+||+||+|+||+++|.++|+.+-
T Consensus 18 l~ha~L~~G~~g~gk~~~a~~~a~~ll 44 (162)
T PF13177_consen 18 LPHALLFHGPSGSGKKTLALAFARALL 44 (162)
T ss_dssp --SEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHHc
Confidence 456799999999999999999998873
No 223
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.05 E-value=0.0012 Score=61.12 Aligned_cols=25 Identities=28% Similarity=0.583 Sum_probs=23.2
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHh
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
++++++.||+|+||||+++++++++
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999987
No 224
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.03 E-value=0.0013 Score=60.05 Aligned_cols=62 Identities=27% Similarity=0.405 Sum_probs=33.5
Q ss_pred CCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCc---EEEEecCC
Q 045456 207 ATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFN---IYDMELTS 279 (288)
Q Consensus 207 ~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~---i~~l~~~~ 279 (288)
..|.++..+...-.+....++.++.. .+.+||.||+|||||++++..-..+.-. +..++.+.
T Consensus 7 ~~~~~~~VpT~dt~r~~~ll~~l~~~-----------~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~ 71 (272)
T PF12775_consen 7 MPFNEILVPTVDTVRYSYLLDLLLSN-----------GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSA 71 (272)
T ss_dssp ------T---HHHHHHHHHHHHHHHC-----------TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-T
T ss_pred cccceEEeCcHHHHHHHHHHHHHHHc-----------CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccC
Confidence 45566655544444444444444432 5679999999999999998877665433 33444444
No 225
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.02 E-value=0.00084 Score=60.82 Aligned_cols=61 Identities=23% Similarity=0.386 Sum_probs=41.9
Q ss_pred CCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCc---EEEEe
Q 045456 205 HPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFN---IYDME 276 (288)
Q Consensus 205 ~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~---i~~l~ 276 (288)
.+.++++++......+.+.+.+...+ ...+.+++.||+|+|||++++++..++... ++.++
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v-----------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iE 162 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAV-----------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIE 162 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCH-----------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEE
T ss_pred ccccHhhccCchhhHHHHHHHHhhcc-----------ccceEEEEECCCccccchHHHHHhhhccccccceEEec
Confidence 34488888777666655555444322 225579999999999999999999988544 45544
No 226
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.02 E-value=0.00069 Score=55.22 Aligned_cols=46 Identities=30% Similarity=0.358 Sum_probs=32.3
Q ss_pred cChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 214 MDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 214 ~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
|.....+++.+.++.... ....++|+|+|||||+++|++|....+.
T Consensus 2 G~S~~~~~l~~~l~~~a~-----------~~~pvli~GE~GtGK~~~A~~lh~~~~~ 47 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAK-----------SSSPVLITGEPGTGKSLLARALHRYSGR 47 (138)
T ss_dssp -SCHHHHHHHHHHHHHHC-----------SSS-EEEECCTTSSHHHHHHCCHHTTTT
T ss_pred CCCHHHHHHHHHHHHHhC-----------CCCcEEEEcCCCCCHHHHHHHHHhhcCc
Confidence 334455566665655442 2456999999999999999999988764
No 227
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.01 E-value=0.002 Score=58.86 Aligned_cols=36 Identities=28% Similarity=0.304 Sum_probs=28.7
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTS 279 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~ 279 (288)
++-++|.||||+||||++..+|..+ |..+..++...
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 4567889999999999999999877 66677666553
No 228
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.01 E-value=0.00092 Score=58.87 Aligned_cols=40 Identities=23% Similarity=0.295 Sum_probs=30.0
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh----CCcEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL----KFNIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~~~~ 279 (288)
|++...-+|+.||||||||+++..++... |.+++.++..+
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee 58 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE 58 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence 66666669999999999999988766433 78888887654
No 229
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.98 E-value=0.0012 Score=63.35 Aligned_cols=69 Identities=14% Similarity=0.171 Sum_probs=53.4
Q ss_pred CCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh----CCcEEEEecCCCC
Q 045456 206 PATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL----KFNIYDMELTSVY 281 (288)
Q Consensus 206 p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~~~~~~ 281 (288)
...+++|+|.+..-+++++.++. |. +....+|++|++||||+.+|++|.... +.||+.+|++.+.
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~-------~a----p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKA-------YA----PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHh-------hC----CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 34788999988877777776665 21 223459999999999999999998553 5699999999887
Q ss_pred Cccc
Q 045456 282 CNSE 285 (288)
Q Consensus 282 ~~~~ 285 (288)
.+..
T Consensus 143 en~~ 146 (403)
T COG1221 143 ENLQ 146 (403)
T ss_pred cCHH
Confidence 7753
No 230
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=96.98 E-value=0.0017 Score=63.96 Aligned_cols=68 Identities=21% Similarity=0.237 Sum_probs=53.9
Q ss_pred CCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCC
Q 045456 204 DHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSV 280 (288)
Q Consensus 204 ~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~ 280 (288)
..+.+|++|++......++++.++.+-. -.-.+|+.|.+||||..+|++|.+.. +-||+.+|+..+
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr~A~-----------tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi 307 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKRIAK-----------TDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI 307 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHhhcC-----------CCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC
Confidence 3456899999998887777665554332 24569999999999999999999876 579999999876
Q ss_pred CC
Q 045456 281 YC 282 (288)
Q Consensus 281 ~~ 282 (288)
-.
T Consensus 308 Pe 309 (560)
T COG3829 308 PE 309 (560)
T ss_pred CH
Confidence 43
No 231
>PLN02459 probable adenylate kinase
Probab=96.95 E-value=0.00094 Score=60.64 Aligned_cols=30 Identities=20% Similarity=0.472 Sum_probs=26.1
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhCCcEEEE
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLKFNIYDM 275 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (288)
.++|.||||+|||++++.+|+.+|++.+..
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~~is~ 60 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVPHIAT 60 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeC
Confidence 378899999999999999999999776643
No 232
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.95 E-value=0.0014 Score=62.37 Aligned_cols=23 Identities=39% Similarity=0.587 Sum_probs=21.3
Q ss_pred eeEEEcCCCCChHHHHHHHHHHh
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l 268 (288)
-+++.||+|+||||+++++++++
T Consensus 136 lilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 136 IVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999999987
No 233
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.95 E-value=0.0014 Score=56.17 Aligned_cols=26 Identities=27% Similarity=0.675 Sum_probs=23.2
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
...+++.||+|+||||+++++++.+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 45689999999999999999998875
No 234
>PRK13764 ATPase; Provisional
Probab=96.94 E-value=0.001 Score=67.11 Aligned_cols=26 Identities=38% Similarity=0.767 Sum_probs=24.0
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
++++|+.||||+||||+++|++.++.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 56899999999999999999998885
No 235
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.94 E-value=0.0012 Score=59.94 Aligned_cols=40 Identities=20% Similarity=0.089 Sum_probs=30.4
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHH---hCCcEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANY---LKFNIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~---l~~~i~~l~~~~ 279 (288)
|++...-++++||||||||+++..+|.. -|.++..++..+
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 5555555899999999999999887654 366777777653
No 236
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0014 Score=64.33 Aligned_cols=33 Identities=36% Similarity=0.521 Sum_probs=30.1
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhCCcEEEEec
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLKFNIYDMEL 277 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~ 277 (288)
..+||+||||+|||.||.-||...++||+.+=.
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiS 571 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIIS 571 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeC
Confidence 459999999999999999999999999998744
No 237
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.94 E-value=0.0025 Score=55.31 Aligned_cols=34 Identities=38% Similarity=0.561 Sum_probs=25.1
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELT 278 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 278 (288)
+-.++.||||||||+++++++..+ |..++.+..+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT 55 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT 55 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 457789999999999999887665 5666666544
No 238
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.93 E-value=0.0016 Score=57.84 Aligned_cols=40 Identities=25% Similarity=0.260 Sum_probs=32.2
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHH---hCCcEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANY---LKFNIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~---l~~~i~~l~~~~ 279 (288)
|++...-++++||||||||+++..++.+ .|.+++.++..+
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 6666666899999999999999999754 377888887643
No 239
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.93 E-value=0.0014 Score=59.18 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=32.2
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~ 279 (288)
|++..+-+|++|+||||||+++...+... |.|++.++..+
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e 61 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE 61 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC
Confidence 66766779999999999999987776543 77888887765
No 240
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.92 E-value=0.0015 Score=58.31 Aligned_cols=40 Identities=28% Similarity=0.201 Sum_probs=31.0
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHH---hCCcEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANY---LKFNIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~---l~~~i~~l~~~~ 279 (288)
|++....+|++||||||||+++..++.+ -|.+.+.++..+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 7776667999999999999998865543 367787777654
No 241
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.92 E-value=0.0018 Score=58.26 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=22.2
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-++|+||||+|||++++.+++.+.
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcC
Confidence 378999999999999999999986
No 242
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.91 E-value=0.0016 Score=57.24 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=31.7
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELT 278 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 278 (288)
|++...-++++||||+|||+++..+|.+. +.+++.++..
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 56555558899999999999999998754 7788888876
No 243
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.90 E-value=0.0022 Score=62.54 Aligned_cols=37 Identities=22% Similarity=0.396 Sum_probs=30.2
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSV 280 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~ 280 (288)
+.-++|+||||+|||+++..+|..+ |..+..++....
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 5568899999999999999999877 566777766543
No 244
>PRK05973 replicative DNA helicase; Provisional
Probab=96.86 E-value=0.0017 Score=58.28 Aligned_cols=40 Identities=23% Similarity=-0.032 Sum_probs=30.4
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~ 279 (288)
|++...-+++.|+||+|||+++..+|.+. |.+++.+++.+
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEe 102 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEY 102 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeC
Confidence 55555558899999999999888776644 77877777654
No 245
>PLN02165 adenylate isopentenyltransferase
Probab=96.84 E-value=0.0011 Score=62.21 Aligned_cols=31 Identities=26% Similarity=0.441 Sum_probs=27.4
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhCCcEEEEe
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLKFNIYDME 276 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (288)
-+.|.||+|+|||+++..||..++..++..+
T Consensus 45 iivIiGPTGSGKStLA~~LA~~l~~eIIsaD 75 (334)
T PLN02165 45 VVVIMGATGSGKSRLSVDLATRFPSEIINSD 75 (334)
T ss_pred EEEEECCCCCcHHHHHHHHHHHcCCceecCC
Confidence 4789999999999999999999998776654
No 246
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.83 E-value=0.0026 Score=59.46 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=27.2
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELT 278 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 278 (288)
.-++|.||||+||||++..+|..+ |..+..++..
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 447799999999999999999887 4556666543
No 247
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.82 E-value=0.0027 Score=58.28 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=28.7
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh----C-CcEEEEecCC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL----K-FNIYDMELTS 279 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l----~-~~i~~l~~~~ 279 (288)
+-++|.||+|+||||++..+|..+ | ..+..++...
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 347899999999999999999876 3 6777777654
No 248
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.80 E-value=0.0029 Score=57.61 Aligned_cols=55 Identities=25% Similarity=0.410 Sum_probs=39.2
Q ss_pred CCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccce-eEEEcCCCCChHHHHHHHHHHhC---CcEEEEe
Q 045456 207 ATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRG-YLLFGPPGTGKSSLIAAMANYLK---FNIYDME 276 (288)
Q Consensus 207 ~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg-~LL~GPpGtGKTsla~aiA~~l~---~~i~~l~ 276 (288)
.++++++..++..+.+.+.+. .++| +++.||+|+||||+++++..++. ..++.++
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~---------------~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiE 115 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLE---------------KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVE 115 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHh---------------cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEEC
Confidence 478888887776666544332 1334 78999999999999999987774 3355553
No 249
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.80 E-value=0.0026 Score=59.58 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=23.0
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHh
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
++++|+.||+|+||||++++++.++
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999986
No 250
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=96.80 E-value=0.00082 Score=66.53 Aligned_cols=47 Identities=30% Similarity=0.423 Sum_probs=35.1
Q ss_pred CCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh
Q 045456 207 ATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 207 ~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
..|+++.|+...++.+.-.+ .-...++|.||||||||+++++|++.+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhccc
Confidence 47899999877765443321 112469999999999999999999754
No 251
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.80 E-value=0.0026 Score=60.76 Aligned_cols=31 Identities=32% Similarity=0.347 Sum_probs=25.4
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC-----CcEEEEe
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK-----FNIYDME 276 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~-----~~i~~l~ 276 (288)
.+|+.||+|+||||++++++.++. ..++.++
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiE 186 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYE 186 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 478899999999999999998873 3566664
No 252
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=96.79 E-value=0.0031 Score=60.10 Aligned_cols=36 Identities=31% Similarity=0.574 Sum_probs=31.2
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEE
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDM 275 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (288)
|+|-+..+++||||.||||+++-.+-+.++-.++..
T Consensus 258 g~PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkViSf 293 (432)
T PF00519_consen 258 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISF 293 (432)
T ss_dssp TBTTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE-G
T ss_pred CCCcccEEEEECCCCCchhHHHHHHHHHhCCEEEEe
Confidence 778778899999999999999999999998777653
No 253
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=96.77 E-value=0.00086 Score=70.10 Aligned_cols=90 Identities=22% Similarity=0.358 Sum_probs=64.6
Q ss_pred CCCCccCCCCCCCccccccChhhhHHHHHHHHHHhhc-HHHHHHhCCcc-cc-eeEEEcCCCCChHHHHHHHHHHhCCcE
Q 045456 196 GAWGSTNLDHPATFDKIAMDPSMKQASIDDLDRFVKR-RNFYRRVGKVW-KR-GYLLFGPPGTGKSSLIAAMANYLKFNI 272 (288)
Q Consensus 196 ~~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~-~~~~~~~g~~~-~r-g~LL~GPpGtGKTsla~aiA~~l~~~i 272 (288)
..|. ..+.|....++.+....-..+.+.+..+-+. +.-|...+..- .+ .+|+.||||.|||+.+.+.|.++|+.+
T Consensus 308 ~~~~--~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v 385 (871)
T KOG1968|consen 308 AGWT--EKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKV 385 (871)
T ss_pred cccc--cccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccce
Confidence 3564 5778888888888877766666666654211 11122111111 12 268999999999999999999999999
Q ss_pred EEEecCCCCCccccc
Q 045456 273 YDMELTSVYCNSELR 287 (288)
Q Consensus 273 ~~l~~~~~~~~~~l~ 287 (288)
+..|.++.+++.+|+
T Consensus 386 ~E~Nas~~RSk~~l~ 400 (871)
T KOG1968|consen 386 VEKNASDVRSKKELL 400 (871)
T ss_pred eecCccccccccHHH
Confidence 999999999988764
No 254
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.77 E-value=0.0025 Score=56.75 Aligned_cols=39 Identities=23% Similarity=0.182 Sum_probs=27.5
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELT 278 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 278 (288)
|++...-+++.||||||||+++..++..+ |..+..++..
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e 61 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ 61 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 45555568999999999999975554433 5666666643
No 255
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.77 E-value=0.0022 Score=56.60 Aligned_cols=40 Identities=20% Similarity=0.180 Sum_probs=30.4
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh---------CCcEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL---------KFNIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---------~~~i~~l~~~~ 279 (288)
|++...-+.++||||||||+++..+|... +..++.++..+
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 55555558899999999999999998543 25677777655
No 256
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.76 E-value=0.0025 Score=64.98 Aligned_cols=35 Identities=26% Similarity=0.536 Sum_probs=27.0
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTS 279 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~ 279 (288)
..++++||||||||+++.++..++ |..++.+..+.
T Consensus 174 ~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn 211 (637)
T TIGR00376 174 DLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSN 211 (637)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcH
Confidence 357899999999999988877765 66777666443
No 257
>PTZ00202 tuzin; Provisional
Probab=96.74 E-value=0.004 Score=60.58 Aligned_cols=63 Identities=19% Similarity=0.171 Sum_probs=46.5
Q ss_pred CCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecC
Q 045456 206 PATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELT 278 (288)
Q Consensus 206 p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~ 278 (288)
|....+++|-++...++.+.+.. .....++-+.|.||+|||||++++.++..++.+.|.++..
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~----------~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRR----------LDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhc----------cCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 44566777777666666554432 2223345577999999999999999999999998888876
No 258
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.71 E-value=0.0028 Score=55.81 Aligned_cols=39 Identities=21% Similarity=0.083 Sum_probs=29.2
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELT 278 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 278 (288)
|++...-+++.||||||||+++..++... |.+++.++..
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e 57 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE 57 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 56655668999999999999998776432 5567666653
No 259
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.71 E-value=0.0044 Score=57.42 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=25.9
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCCcE
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKFNI 272 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i 272 (288)
|--+++.||+|||||++|..+|..+|.+.
T Consensus 92 p~iIlI~G~sgsGKStlA~~La~~l~~~~ 120 (301)
T PRK04220 92 PIIILIGGASGVGTSTIAFELASRLGIRS 120 (301)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 34588999999999999999999999883
No 260
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.68 E-value=0.0029 Score=62.47 Aligned_cols=56 Identities=25% Similarity=0.413 Sum_probs=40.9
Q ss_pred CCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccce-eEEEcCCCCChHHHHHHHHHHhCC---cEEEEe
Q 045456 206 PATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRG-YLLFGPPGTGKSSLIAAMANYLKF---NIYDME 276 (288)
Q Consensus 206 p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg-~LL~GPpGtGKTsla~aiA~~l~~---~i~~l~ 276 (288)
+.++++++..+++.+.+.+.+. .++| +++.||+|+||||+..++.+++.. .++.++
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~---------------~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiE 277 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIR---------------RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVE 277 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHh---------------cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEc
Confidence 4588999888877766655333 2456 678999999999999988887753 355554
No 261
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.002 Score=65.27 Aligned_cols=63 Identities=21% Similarity=0.288 Sum_probs=42.1
Q ss_pred cccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC----cEEEEecCCCCCc
Q 045456 210 DKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF----NIYDMELTSVYCN 283 (288)
Q Consensus 210 ~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~----~i~~l~~~~~~~~ 283 (288)
.+++..+..|++..+....+ +..+..+||+||+|||||.|++++++++.. .+..++++.+...
T Consensus 408 ~d~i~~~s~kke~~n~~~sp-----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~ 474 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP-----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGS 474 (952)
T ss_pred Cceeecchhhhhhhhhhccc-----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccch
Confidence 55555666666544422211 233556999999999999999999999864 4556666665443
No 262
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.68 E-value=0.0031 Score=53.93 Aligned_cols=37 Identities=24% Similarity=0.411 Sum_probs=32.9
Q ss_pred eeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCCCC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSVYC 282 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~ 282 (288)
-+.|.|.+|.||||+|.|+++.| |+..|.+++..+..
T Consensus 25 viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~ 64 (197)
T COG0529 25 VIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRH 64 (197)
T ss_pred EEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhh
Confidence 46689999999999999999887 89999999987754
No 263
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.67 E-value=0.0037 Score=60.67 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=29.5
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTS 279 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~ 279 (288)
+.-++|.||+|+||||++..+|..+ |..+..+++..
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~ 138 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADT 138 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcc
Confidence 3458899999999999999999877 77777776643
No 264
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.65 E-value=0.0048 Score=59.22 Aligned_cols=36 Identities=36% Similarity=0.642 Sum_probs=28.6
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHh-------CCcEEEEecCC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYL-------KFNIYDMELTS 279 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l-------~~~i~~l~~~~ 279 (288)
++-++|+||+|+||||++.-+|..+ |..+..++...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt 216 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDN 216 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccC
Confidence 4568899999999999999999876 35666666654
No 265
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=96.65 E-value=0.0031 Score=58.07 Aligned_cols=50 Identities=22% Similarity=0.225 Sum_probs=39.8
Q ss_pred ccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccce--eEEEcCCCCChHHHHHHHHHHh
Q 045456 211 KIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRG--YLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 211 ~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg--~LL~GPpGtGKTsla~aiA~~l 268 (288)
.|.|+.-+++.|...+..++.++. +.+. +-|||+|||||+..++.||+.+
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~--------p~KPLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN--------PRKPLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC--------CCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence 457788888999999988887532 3334 4489999999999999999876
No 266
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.64 E-value=0.0026 Score=62.78 Aligned_cols=39 Identities=21% Similarity=0.166 Sum_probs=31.5
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHH----hCCcEEEEecC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANY----LKFNIYDMELT 278 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~----l~~~i~~l~~~ 278 (288)
|++..+.+|+.||||||||++|..++.+ .|-+.+.++..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 6777777999999999999999987433 36788877765
No 267
>PRK10867 signal recognition particle protein; Provisional
Probab=96.63 E-value=0.004 Score=60.61 Aligned_cols=38 Identities=21% Similarity=0.327 Sum_probs=30.0
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHh----CCcEEEEecCCCC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYL----KFNIYDMELTSVY 281 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~~~~~~ 281 (288)
+.-+++.||||+||||++.-+|..+ |..+..+++...+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R 141 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR 141 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc
Confidence 4568899999999999888888765 6777777776443
No 268
>PRK10436 hypothetical protein; Provisional
Probab=96.63 E-value=0.0044 Score=60.85 Aligned_cols=56 Identities=25% Similarity=0.444 Sum_probs=40.4
Q ss_pred CCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccce-eEEEcCCCCChHHHHHHHHHHhCC---cEEEEe
Q 045456 206 PATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRG-YLLFGPPGTGKSSLIAAMANYLKF---NIYDME 276 (288)
Q Consensus 206 p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg-~LL~GPpGtGKTsla~aiA~~l~~---~i~~l~ 276 (288)
+.+++++++.++..+.+.+.+.. ++| +|+.||+|+||||+..++.++++. .++.++
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~~---------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiE 253 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQQ---------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVE 253 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHHh---------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEec
Confidence 34889999888777666654331 445 678999999999999888777743 355544
No 269
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=96.62 E-value=0.0048 Score=60.26 Aligned_cols=28 Identities=36% Similarity=0.385 Sum_probs=25.8
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
+.-+++.|+||||||+++..+|..++..
T Consensus 255 p~vil~~G~~G~GKSt~a~~LA~~lg~~ 282 (475)
T PRK12337 255 PLHVLIGGVSGVGKSVLASALAYRLGIT 282 (475)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 5668899999999999999999999986
No 270
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.61 E-value=0.0026 Score=59.72 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=24.4
Q ss_pred ccceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 243 WKRGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
.+..+||+||+|+|||++|+++|+.+.
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~ll 46 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALL 46 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHc
Confidence 456899999999999999999999975
No 271
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.61 E-value=0.0012 Score=62.44 Aligned_cols=29 Identities=34% Similarity=0.641 Sum_probs=23.4
Q ss_pred cccce--eEEEcCCCCChHHHHHHHHHHhCC
Q 045456 242 VWKRG--YLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 242 ~~~rg--~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
..++| +-|.||+||||||+.++||+...-
T Consensus 27 ~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p 57 (352)
T COG3842 27 DIKKGEFVTLLGPSGCGKTTLLRMIAGFEQP 57 (352)
T ss_pred eecCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34556 558999999999999999987643
No 272
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.60 E-value=0.0011 Score=59.52 Aligned_cols=31 Identities=32% Similarity=0.527 Sum_probs=25.1
Q ss_pred Ccccce--eEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 241 KVWKRG--YLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 241 ~~~~rg--~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
....+| +-+.||+||||||+.+.||+.....
T Consensus 24 L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~ 56 (248)
T COG1116 24 LSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT 56 (248)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 344555 7789999999999999999877544
No 273
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.60 E-value=0.0039 Score=54.83 Aligned_cols=40 Identities=18% Similarity=0.108 Sum_probs=32.3
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~ 279 (288)
|++...-+++.||||+|||+++..+|.+. |.+++.++..+
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 77776678999999999999988877542 77888887765
No 274
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.59 E-value=0.0018 Score=60.83 Aligned_cols=28 Identities=39% Similarity=0.631 Sum_probs=25.3
Q ss_pred ccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 243 WKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
.+.++||+||+|+||+++|+++|+.+.+
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC 48 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLC 48 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcC
Confidence 3568999999999999999999999865
No 275
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.59 E-value=0.0028 Score=54.89 Aligned_cols=36 Identities=25% Similarity=0.353 Sum_probs=28.7
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSV 280 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~ 280 (288)
.-+.|.|+||+|||+++++|+..+ |...+.++...+
T Consensus 25 ~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~ 63 (198)
T PRK03846 25 VVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNV 63 (198)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeH
Confidence 347789999999999999999987 455677765443
No 276
>PRK04328 hypothetical protein; Provisional
Probab=96.57 E-value=0.0037 Score=56.27 Aligned_cols=40 Identities=28% Similarity=0.198 Sum_probs=29.7
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHH---hCCcEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANY---LKFNIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~---l~~~i~~l~~~~ 279 (288)
|++...-+|++||||||||+++..++.+ -|.+.+.++..+
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee 61 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE 61 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 6666666899999999999998876543 366777776643
No 277
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.57 E-value=0.0023 Score=69.47 Aligned_cols=60 Identities=18% Similarity=0.145 Sum_probs=42.9
Q ss_pred cCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 201 TNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 201 ~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
+....+..+++++|.++..+++...+.. +....+-+-++||+|+||||+|+++++.+...
T Consensus 175 l~~~~~~~~~~~vG~~~~l~~l~~lL~l-----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~ 234 (1153)
T PLN03210 175 LNLTPSNDFEDFVGIEDHIAKMSSLLHL-----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ 234 (1153)
T ss_pred hccccCcccccccchHHHHHHHHHHHcc-----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhc
Confidence 3444566788899988777776654431 22224457799999999999999999887543
No 278
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.55 E-value=0.0035 Score=58.65 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=29.3
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~ 279 (288)
|++..+-++++||||||||+||..++.+. |-++..++...
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~ 93 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEH 93 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccc
Confidence 55555558899999999999987765543 56676666544
No 279
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.54 E-value=0.0031 Score=55.28 Aligned_cols=40 Identities=23% Similarity=0.200 Sum_probs=30.5
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh---C------CcEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL---K------FNIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~------~~i~~l~~~~ 279 (288)
|++...-+.++||||+|||+++..+|... + ..++.++..+
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 56555558899999999999999998653 2 5667777654
No 280
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.54 E-value=0.0016 Score=55.57 Aligned_cols=30 Identities=30% Similarity=0.553 Sum_probs=24.3
Q ss_pred CCcccce--eEEEcCCCCChHHHHHHHHHHhC
Q 045456 240 GKVWKRG--YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 240 g~~~~rg--~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
.....+| +++.||+|||||++.+++|....
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred eeeecCCceEEEeCCCCccHHHHHHHHHhccC
Confidence 3344555 88999999999999999998654
No 281
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.54 E-value=0.0021 Score=70.23 Aligned_cols=41 Identities=32% Similarity=0.378 Sum_probs=37.1
Q ss_pred ccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCCc
Q 045456 243 WKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYCN 283 (288)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~ 283 (288)
..+++||-|.||.|||+++.|+|+..|-.++.+++++-++-
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL 1582 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDL 1582 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchH
Confidence 36789999999999999999999999999999999876543
No 282
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.53 E-value=0.0037 Score=58.49 Aligned_cols=25 Identities=36% Similarity=0.701 Sum_probs=22.7
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHh
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
++.+++.||+|+|||+++++++.++
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhh
Confidence 5679999999999999999999874
No 283
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.52 E-value=0.0034 Score=58.18 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=30.5
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh---------CCcEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL---------KFNIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---------~~~i~~l~~~~ 279 (288)
|++...-++++||||||||+++..+|-.. +-.++.|+..+
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 56655557899999999999999888663 23677777655
No 284
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.002 Score=63.64 Aligned_cols=53 Identities=30% Similarity=0.545 Sum_probs=43.2
Q ss_pred hhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCCc
Q 045456 230 VKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYCN 283 (288)
Q Consensus 230 ~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~ 283 (288)
+.+++.++..+..+++|++++||||||||++++++|++ +.....++.+.+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~ 56 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSK 56 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhh
Confidence 44677788889999999999999999999999999999 655566666555443
No 285
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.52 E-value=0.0029 Score=53.91 Aligned_cols=36 Identities=28% Similarity=0.452 Sum_probs=28.5
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSV 280 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~ 280 (288)
.-+.+.|+||+|||+++++++..+ +.+.+.++...+
T Consensus 19 ~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~ 57 (184)
T TIGR00455 19 VVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNV 57 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHH
Confidence 347789999999999999999997 445666665544
No 286
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=96.51 E-value=0.0079 Score=50.07 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=27.8
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCCcEEEEec
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMEL 277 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~ 277 (288)
.+.+||.+|+|+|||.++..++.++..+++.+-.
T Consensus 25 ~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~p 58 (184)
T PF04851_consen 25 ERRVLLNAPTGSGKTIIALALILELARKVLIVAP 58 (184)
T ss_dssp CSEEEEEESTTSSHHHHHHHHHHHHHCEEEEEES
T ss_pred CCCEEEEECCCCCcChhhhhhhhccccceeEecC
Confidence 5679999999999999999877777667777653
No 287
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.51 E-value=0.0039 Score=60.93 Aligned_cols=40 Identities=30% Similarity=0.297 Sum_probs=32.2
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~ 279 (288)
|++...-++++||||+|||+++..+|... +.+++.++..+
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee 118 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE 118 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 55555558899999999999999998765 67888887654
No 288
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.51 E-value=0.0068 Score=58.31 Aligned_cols=58 Identities=21% Similarity=0.298 Sum_probs=37.1
Q ss_pred hhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecC
Q 045456 217 SMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELT 278 (288)
Q Consensus 217 ~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 278 (288)
+.++.+.+.+...+..+..+ . ..++-++|.||+|+||||++..||..+ |..+..++..
T Consensus 218 ~~~~~l~~~l~~~l~~~~~~---~-~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aD 278 (436)
T PRK11889 218 EVIEYILEDMRSHFNTENVF---E-KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD 278 (436)
T ss_pred HHHHHHHHHHHHHhcccccc---c-cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 44555555555544432111 1 123568899999999999999999877 3455555554
No 289
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.49 E-value=0.0017 Score=61.04 Aligned_cols=29 Identities=34% Similarity=0.565 Sum_probs=23.7
Q ss_pred cccce--eEEEcCCCCChHHHHHHHHHHhCC
Q 045456 242 VWKRG--YLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 242 ~~~rg--~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
....| +.|.||+||||||+.+.||+....
T Consensus 25 ~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~ 55 (338)
T COG3839 25 DIEDGEFVVLLGPSGCGKSTLLRMIAGLEEP 55 (338)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34455 779999999999999999987653
No 290
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.43 E-value=0.0035 Score=57.82 Aligned_cols=47 Identities=32% Similarity=0.639 Sum_probs=35.6
Q ss_pred CCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccce-eEEEcCCCCChHHHHHHHHHHhCC
Q 045456 205 HPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRG-YLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 205 ~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg-~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
...+|+.++.++-.++ +.+ .++| +|..||.|+|||++..||-+++|.
T Consensus 104 ~i~~~e~LglP~i~~~-~~~------------------~~~GLILVTGpTGSGKSTTlAamId~iN~ 151 (353)
T COG2805 104 KIPTLEELGLPPIVRE-LAE------------------SPRGLILVTGPTGSGKSTTLAAMIDYINK 151 (353)
T ss_pred cCCCHHHcCCCHHHHH-HHh------------------CCCceEEEeCCCCCcHHHHHHHHHHHHhc
Confidence 3458999988876554 211 3677 556899999999999999999864
No 291
>PRK14974 cell division protein FtsY; Provisional
Probab=96.43 E-value=0.0088 Score=56.38 Aligned_cols=35 Identities=31% Similarity=0.413 Sum_probs=26.9
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELT 278 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 278 (288)
++-++|.||||+||||+++.+|..+ |..+..++..
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 3458899999999999999998776 4556555543
No 292
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.41 E-value=0.0045 Score=55.92 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=31.3
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh----CCcEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL----KFNIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~~~~ 279 (288)
|+....-+++.||||+|||+++..+|..+ |.++..+++.+
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~ 69 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE 69 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc
Confidence 44444558899999999999998887664 77888888754
No 293
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.41 E-value=0.0032 Score=58.11 Aligned_cols=44 Identities=30% Similarity=0.502 Sum_probs=38.5
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHhC--CcEEEEecCCCCCc
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYLK--FNIYDMELTSVYCN 283 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l~--~~i~~l~~~~~~~~ 283 (288)
|+-..|.+|+-||||||||.+|-.||+.|| .||..+.++++-+.
T Consensus 62 gkiaGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~Sl 107 (454)
T KOG2680|consen 62 GKIAGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIYSL 107 (454)
T ss_pred CcccceEEEEecCCCCCceeeeeehhhhhCCCCceeeeecceeeee
Confidence 555678899999999999999999999998 58999999888654
No 294
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.41 E-value=0.0043 Score=60.76 Aligned_cols=53 Identities=25% Similarity=0.347 Sum_probs=41.4
Q ss_pred CCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccce-eEEEcCCCCChHHHHHHHHHHhCCcEE
Q 045456 206 PATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRG-YLLFGPPGTGKSSLIAAMANYLKFNIY 273 (288)
Q Consensus 206 p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg-~LL~GPpGtGKTsla~aiA~~l~~~i~ 273 (288)
..+|+++++.+...+.+.+.+. -+.| +|+.||.|+|||++..++.++++.+-.
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~~~~---------------~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~ 287 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLRLLN---------------RPQGLILVTGPTGSGKTTTLYAALSELNTPER 287 (500)
T ss_pred cCCHHHhCCCHHHHHHHHHHHh---------------CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCc
Confidence 4478999998888777766544 2567 556899999999999999999976544
No 295
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.40 E-value=0.0045 Score=58.39 Aligned_cols=24 Identities=42% Similarity=0.785 Sum_probs=21.6
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+++.||+|+||||+++++.+++.
T Consensus 124 ~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 124 LILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC
Confidence 478999999999999999998775
No 296
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.40 E-value=0.0034 Score=58.87 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=27.5
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCCcEEE
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKFNIYD 274 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (288)
.+.+.|.|+||||||+|++++++.++.+++.
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~ 192 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAW 192 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEe
Confidence 3468999999999999999999999988754
No 297
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.39 E-value=0.0042 Score=58.68 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=26.0
Q ss_pred cccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 242 VWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 242 ~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
..+.++||+||+|+||+++|.++|+.+.+
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC 47 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLC 47 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 45678999999999999999999998865
No 298
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.39 E-value=0.0049 Score=57.75 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=29.6
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHH---hCCcEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANY---LKFNIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~---l~~~i~~l~~~~ 279 (288)
|++..+-++++||||||||++|..++.+ .|..+..++...
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~ 93 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEH 93 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccc
Confidence 5555555889999999999999877744 366777776643
No 299
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=96.39 E-value=0.0031 Score=62.57 Aligned_cols=28 Identities=36% Similarity=0.515 Sum_probs=24.7
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCCcEEE
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKFNIYD 274 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (288)
+.+.||+||||||+++.||+.+|+.+++
T Consensus 287 i~i~G~sgsGKst~a~~la~~l~~~~~d 314 (512)
T PRK13477 287 IAIDGPAGAGKSTVTRAVAKKLGLLYLD 314 (512)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 6689999999999999999999866554
No 300
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.38 E-value=0.0044 Score=57.73 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=30.7
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh---------CCcEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL---------KFNIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---------~~~i~~l~~~~ 279 (288)
|++...-++++||||||||.++..+|-.. +..++.++..+
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 56655558899999999999999988653 34677777655
No 301
>PRK07667 uridine kinase; Provisional
Probab=96.37 E-value=0.0055 Score=52.95 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=29.3
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhC---CcEEEEecCCC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLK---FNIYDMELTSV 280 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~---~~i~~l~~~~~ 280 (288)
.-+.+.|+||+|||+++..++..++ .++..++..+.
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 4577999999999999999999874 56667766653
No 302
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.36 E-value=0.011 Score=57.34 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=26.7
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh----CCcEEEEecCC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL----KFNIYDMELTS 279 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~~~~ 279 (288)
.-+++.||+|+||||++..+|..+ |..+..++...
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 347899999999999999999754 45566665544
No 303
>PRK10536 hypothetical protein; Provisional
Probab=96.35 E-value=0.0054 Score=55.61 Aligned_cols=37 Identities=22% Similarity=0.153 Sum_probs=27.1
Q ss_pred eeEEEcCCCCChHHHHHHHHHH-h-C--CcEEEEecCCCCC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANY-L-K--FNIYDMELTSVYC 282 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~-l-~--~~i~~l~~~~~~~ 282 (288)
-+++.||+|||||++|.|+|.+ + + +..+.+.-+.+..
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ 116 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQA 116 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCc
Confidence 5788999999999999999985 3 2 4555555555443
No 304
>PLN02840 tRNA dimethylallyltransferase
Probab=96.33 E-value=0.0037 Score=60.41 Aligned_cols=32 Identities=31% Similarity=0.433 Sum_probs=28.4
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhCCcEEEEec
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLKFNIYDMEL 277 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~ 277 (288)
-+++.||+|+|||+++..||..++.+++.++.
T Consensus 23 vi~I~GptgsGKTtla~~La~~~~~~iis~Ds 54 (421)
T PLN02840 23 VIVISGPTGAGKSRLALELAKRLNGEIISADS 54 (421)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence 47789999999999999999999998877654
No 305
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.33 E-value=0.0033 Score=59.80 Aligned_cols=29 Identities=31% Similarity=0.526 Sum_probs=25.0
Q ss_pred CcccceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 241 KVWKRGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 241 ~~~~rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
.+.++|++||||+|+|||+|.-+.-+.+.
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp 87 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLP 87 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCC
Confidence 45789999999999999999988877654
No 306
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.31 E-value=0.0039 Score=60.07 Aligned_cols=30 Identities=27% Similarity=0.402 Sum_probs=26.4
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCCcEE
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKFNIY 273 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~ 273 (288)
.+-+.+.|++|||||||+++||+.+|.+.+
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v 248 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSA 248 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 456899999999999999999999988743
No 307
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.30 E-value=0.0065 Score=61.15 Aligned_cols=48 Identities=27% Similarity=0.558 Sum_probs=37.2
Q ss_pred CCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccce-eEEEcCCCCChHHHHHHHHHHhC
Q 045456 207 ATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRG-YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 207 ~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg-~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
.+++++++.++..+.+.+.+.. ++| +|+.||+|+||||+..++.++++
T Consensus 293 ~~l~~lg~~~~~~~~l~~~~~~---------------~~Glilv~G~tGSGKTTtl~a~l~~~~ 341 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFLEAIHK---------------PQGMVLVTGPTGSGKTVSLYTALNILN 341 (564)
T ss_pred CCHHHcCCCHHHHHHHHHHHHh---------------cCCeEEEECCCCCCHHHHHHHHHHhhC
Confidence 5789999888777766554431 345 67899999999999988888875
No 308
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.29 E-value=0.003 Score=49.71 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=19.8
Q ss_pred cceeEEEcCCCCChHHHHHHHH
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMA 265 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA 265 (288)
...+.|.||+|+|||++++++.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3568899999999999999987
No 309
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=96.27 E-value=0.0053 Score=53.13 Aligned_cols=26 Identities=46% Similarity=0.807 Sum_probs=23.5
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
.+.++++||.|+|||++++.+.+.+.
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~ 45 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELK 45 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhh
Confidence 45799999999999999999999984
No 310
>smart00350 MCM minichromosome maintenance proteins.
Probab=96.25 E-value=0.0052 Score=61.09 Aligned_cols=29 Identities=34% Similarity=0.560 Sum_probs=24.7
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhCCcEEE
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLKFNIYD 274 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (288)
.+||+|+||||||.+++++++......+.
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r~~~~ 266 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRAVYT 266 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCcceEc
Confidence 49999999999999999999987654443
No 311
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.25 E-value=0.004 Score=59.41 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=26.4
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh----C-CcEEEEecCC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL----K-FNIYDMELTS 279 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l----~-~~i~~l~~~~ 279 (288)
+-++|.||+|+|||+++..||..+ | ..+..+....
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~ 177 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDS 177 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 348899999999999999999864 3 3555555443
No 312
>PF06431 Polyoma_lg_T_C: Polyomavirus large T antigen C-terminus; InterPro: IPR010932 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []. Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the helicase domain of LTag, which assembles into a hexameric structure containing a positively charged central channel that can bind both single- and double-stranded DNA []. ATP binding and hydrolysis trigger large conformational changes which are thought to be coupled to the melting of origin DNA and the unwinding of duplex DNA []. These conformational changes cause the angles and orientations between regions of a monomer to alter, creating what was described as an "iris"-like motion in the hexamer. In addition to this, six beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 2H1L_H 1SVO_A 1SVM_E 1SVL_B 1N25_A 4E2I_K.
Probab=96.23 E-value=0.0086 Score=56.63 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=29.6
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELT 278 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~ 278 (288)
.+|-+|.+||-||=.|||||+|+|+-..+|---+.|+.+
T Consensus 151 N~PKkRy~lFkGPvNsGKTTlAAAlLdL~gG~~LNvN~p 189 (417)
T PF06431_consen 151 NIPKKRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCP 189 (417)
T ss_dssp TBTTB-EEEEE-STTSSHHHHHHHHHHHH-EEEE-TSS-
T ss_pred CCCcceeEEEecCcCCchHHHHHHHHHhcCCceeecCCC
Confidence 567789999999999999999999999998766666554
No 313
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.22 E-value=0.011 Score=57.35 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=27.7
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh-----CCcEEEEecCC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL-----KFNIYDMELTS 279 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~~~~ 279 (288)
+-++|.||+|+||||++..+|..+ +..+..++...
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 457899999999999999888754 35677777654
No 314
>PRK04132 replication factor C small subunit; Provisional
Probab=96.21 E-value=0.0025 Score=66.57 Aligned_cols=49 Identities=24% Similarity=0.464 Sum_probs=37.6
Q ss_pred CCCccCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHH
Q 045456 197 AWGSTNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSL 260 (288)
Q Consensus 197 ~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsl 260 (288)
.| ....+|.+|+|++|++..++.|...+.. |.. ..++|+||||+||+..
T Consensus 8 ~~--~~k~RP~~f~dIiGqe~i~~~Lk~~i~~-----------~~i--~h~l~~g~~g~~~cl~ 56 (846)
T PRK04132 8 PW--VEKYRPQRLDDIVGQEHIVKRLKHYVKT-----------GSM--PHLLFAGPPGVGKCLT 56 (846)
T ss_pred cH--HHhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCC--CeEEEECCCCCCcccc
Confidence 46 3588999999999999999877775552 221 2378999999999753
No 315
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.21 E-value=0.0046 Score=56.47 Aligned_cols=55 Identities=20% Similarity=0.326 Sum_probs=41.4
Q ss_pred cCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh
Q 045456 201 TNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 201 ~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
++.++|.+++.+....+....++.... . + --..+|+|||+|+||-|.+.|+-+++
T Consensus 4 vdkyrpksl~~l~~~~e~~~~Lksl~~----~-------~--d~PHll~yGPSGaGKKTrimclL~el 58 (351)
T KOG2035|consen 4 VDKYRPKSLDELIYHEELANLLKSLSS----T-------G--DFPHLLVYGPSGAGKKTRIMCLLREL 58 (351)
T ss_pred hhhcCcchhhhcccHHHHHHHHHHhcc----c-------C--CCCeEEEECCCCCCchhhHHHHHHHH
Confidence 568899999998887776665544211 0 1 01369999999999999999999887
No 316
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.21 E-value=0.011 Score=55.51 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=26.5
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCC--cEEEE
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKF--NIYDM 275 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~--~i~~l 275 (288)
++++++.||+|+||||+++|++.++.. .++.+
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~ti 193 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITV 193 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEe
Confidence 567999999999999999999998863 34444
No 317
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=96.20 E-value=0.012 Score=57.44 Aligned_cols=62 Identities=18% Similarity=0.184 Sum_probs=45.4
Q ss_pred ccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCCC
Q 045456 209 FDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSVY 281 (288)
Q Consensus 209 ~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~ 281 (288)
+.++++.....+.+.+.+.... .....+++.|++||||+++|++|.... +.|++.++++.+.
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~~-----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~ 201 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRLS-----------RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIP 201 (469)
T ss_pred cccceecCHHHHHHHHHHHHHh-----------ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCC
Confidence 4567776665555555444322 123469999999999999999999886 4699999998773
No 318
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.17 E-value=0.0026 Score=51.12 Aligned_cols=26 Identities=38% Similarity=0.583 Sum_probs=22.5
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
.-+.+.||+|+|||+++++|++....
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred CEEEEEccCCCccccceeeecccccc
Confidence 34789999999999999999987753
No 319
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.16 E-value=0.0063 Score=43.08 Aligned_cols=22 Identities=45% Similarity=0.791 Sum_probs=19.7
Q ss_pred eEEEcCCCCChHHHHHHHHHHh
Q 045456 247 YLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l 268 (288)
.+|+||.|+|||++.-||.--|
T Consensus 26 tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 26 TLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8899999999999999987654
No 320
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.15 E-value=0.011 Score=57.42 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=29.2
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHh----CCcEEEEecCCC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYL----KFNIYDMELTSV 280 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~~~~~ 280 (288)
+.-+++.||||+|||+++.-+|..+ |..+..+++...
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~ 139 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY 139 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 4568899999999999988888764 567777776543
No 321
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.12 E-value=0.0077 Score=57.63 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=30.5
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCCCC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSVYC 282 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~ 282 (288)
++-++|.||+|+|||+++..+|..+ |..+..+++.....
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 4457899999999999999999876 56677777665443
No 322
>PRK06851 hypothetical protein; Provisional
Probab=96.12 E-value=0.012 Score=56.11 Aligned_cols=36 Identities=33% Similarity=0.525 Sum_probs=30.2
Q ss_pred ccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecC
Q 045456 243 WKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELT 278 (288)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 278 (288)
..+-++|.||||||||++++.++.++ |+++.....+
T Consensus 213 ~~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~ 251 (367)
T PRK06851 213 VKNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCG 251 (367)
T ss_pred cceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 35669999999999999999999988 7777766655
No 323
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=96.11 E-value=0.0072 Score=61.95 Aligned_cols=40 Identities=23% Similarity=0.280 Sum_probs=30.9
Q ss_pred HHHHhCCcccc---eeEEEcCCCCChHHHHHHHHHHhCCcEEE
Q 045456 235 FYRRVGKVWKR---GYLLFGPPGTGKSSLIAAMANYLKFNIYD 274 (288)
Q Consensus 235 ~~~~~g~~~~r---g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (288)
.+..+|.+... -+.+.||+|+|||++++.+|+++|+++++
T Consensus 430 ~l~~Lg~~~~~~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~ 472 (661)
T PRK11860 430 ALFSVAQADADRVPVICIDGPTASGKGTVAARVAEALGYHYLD 472 (661)
T ss_pred HHHHhcCCcccCcceEEeeCCCCCCHHHHHHHHHHHhCCeEec
Confidence 34455654322 36789999999999999999999999854
No 324
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.09 E-value=0.0055 Score=49.45 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=23.2
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
.-++|.|+=|.|||++++++|+.+|.+
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 348899999999999999999999874
No 325
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.09 E-value=0.0053 Score=47.84 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=19.8
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+++.|++|+|||+|++.+++...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 67899999999999999997553
No 326
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.07 E-value=0.0097 Score=56.87 Aligned_cols=40 Identities=30% Similarity=0.300 Sum_probs=31.0
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~ 279 (288)
|++...-++++||||+|||+++..+|..+ +.+++.++..+
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE 120 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE 120 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence 55555558899999999999999988765 35777777654
No 327
>PRK06851 hypothetical protein; Provisional
Probab=96.04 E-value=0.012 Score=56.03 Aligned_cols=32 Identities=31% Similarity=0.544 Sum_probs=26.0
Q ss_pred ccceeEEEcCCCCChHHHHHHHHHHh---CCcEEE
Q 045456 243 WKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYD 274 (288)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~ 274 (288)
..+-++|.||||||||++++.++..+ |+++-.
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~ 63 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEF 63 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 35679999999999999999999887 455433
No 328
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.04 E-value=0.01 Score=43.74 Aligned_cols=30 Identities=27% Similarity=0.409 Sum_probs=24.1
Q ss_pred eEEEcCCCCChHHHHHHHHHHh---CCcEEEEe
Q 045456 247 YLLFGPPGTGKSSLIAAMANYL---KFNIYDME 276 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~ 276 (288)
+++.|.+|+|||+++..+|..+ |.++..++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 4678999999999999999998 56555443
No 329
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.03 E-value=0.008 Score=54.35 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=26.6
Q ss_pred cceeEEEcCCCCChHHHHHHHHHH--hCC--c-EEEEecCCC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANY--LKF--N-IYDMELTSV 280 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~--l~~--~-i~~l~~~~~ 280 (288)
.+-+.++|++|+|||++|..+++. ..- + ++.++++..
T Consensus 19 ~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~ 60 (287)
T PF00931_consen 19 VRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKN 60 (287)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-
T ss_pred eEEEEEEcCCcCCcceeeeecccccccccccccccccccccc
Confidence 445789999999999999999987 332 2 344555543
No 330
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=96.02 E-value=0.017 Score=56.47 Aligned_cols=65 Identities=14% Similarity=0.083 Sum_probs=51.2
Q ss_pred CccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhC---CcEEEEecCCCCCc
Q 045456 208 TFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK---FNIYDMELTSVYCN 283 (288)
Q Consensus 208 ~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~---~~i~~l~~~~~~~~ 283 (288)
....++|.....+++.+.+...-. ..-.+|+.|++||||..+|++|.+.-. .||+.||++.+-.+
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~-----------s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAP-----------SDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 566788888888887776664332 134699999999999999999998875 49999999887543
No 331
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.02 E-value=0.0053 Score=58.88 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=21.8
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
.+++||||||||+|++.|++....
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHh
Confidence 888999999999999999998754
No 332
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.00 E-value=0.0057 Score=50.97 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=21.5
Q ss_pred cceeEEEcCCCCChHHHHHHHHHH
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~ 267 (288)
.+|+||.||+|.|||+++.++...
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 468999999999999999888765
No 333
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.00 E-value=0.011 Score=55.30 Aligned_cols=28 Identities=32% Similarity=0.532 Sum_probs=24.6
Q ss_pred ccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 243 WKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
.+..+||+||+|+||+++|.++|+.+.+
T Consensus 25 l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC 52 (319)
T PRK08769 25 LGHGLLICGPEGLGKRAVALALAEHVLA 52 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHhC
Confidence 3568999999999999999999988754
No 334
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.98 E-value=0.0082 Score=57.23 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.7
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
.++.||||||||++++.+|+.+..
T Consensus 136 ~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 136 GLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 799999999999999999998743
No 335
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.97 E-value=0.0024 Score=56.36 Aligned_cols=29 Identities=28% Similarity=0.412 Sum_probs=22.3
Q ss_pred CcccceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 241 KVWKRGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 241 ~~~~rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
++..+---|.||+||||||+.+++-....
T Consensus 30 i~~~~VTAlIGPSGcGKST~LR~lNRmnd 58 (253)
T COG1117 30 IPKNKVTALIGPSGCGKSTLLRCLNRMND 58 (253)
T ss_pred ccCCceEEEECCCCcCHHHHHHHHHhhcc
Confidence 33334466999999999999999876654
No 336
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.94 E-value=0.011 Score=58.33 Aligned_cols=40 Identities=23% Similarity=0.195 Sum_probs=30.7
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~ 279 (288)
|++...-+|+.||||+|||+++...+... |-+.+.++..+
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eE 301 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEE 301 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 55555559999999999999988887754 56777776554
No 337
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.93 E-value=0.022 Score=52.67 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=26.8
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELT 278 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 278 (288)
..-+.+.||||+|||+++..++..+ |..+..++..
T Consensus 34 ~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D 71 (300)
T TIGR00750 34 AHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVD 71 (300)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 3457789999999999999999876 5555555443
No 338
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.93 E-value=0.0073 Score=57.10 Aligned_cols=27 Identities=26% Similarity=0.518 Sum_probs=24.2
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
++.+|+.||+|+||||+++++++++..
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~~ 188 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIPP 188 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccCC
Confidence 567999999999999999999998754
No 339
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=95.91 E-value=0.016 Score=56.19 Aligned_cols=24 Identities=33% Similarity=0.646 Sum_probs=21.4
Q ss_pred cceeEEEcCCCCChHHHHHHHHHH
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~ 267 (288)
..++++.||||||||.++.+++.+
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHH
Confidence 457999999999999999998876
No 340
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.91 E-value=0.0056 Score=53.45 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=21.6
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++|++.+.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCcC
Confidence 377999999999999999998874
No 341
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.90 E-value=0.0099 Score=54.30 Aligned_cols=37 Identities=27% Similarity=0.444 Sum_probs=31.6
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSV 280 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~ 280 (288)
....||.|++|+||.++++..|-.+++.++.+..+.-
T Consensus 31 ~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~ 67 (268)
T PF12780_consen 31 RGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKG 67 (268)
T ss_dssp TEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTT
T ss_pred CCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCC
Confidence 3458999999999999999999999999999987653
No 342
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.89 E-value=0.015 Score=53.94 Aligned_cols=27 Identities=15% Similarity=0.503 Sum_probs=24.1
Q ss_pred ccceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 243 WKRGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
....+++.||+|+||||+++++++++.
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 356799999999999999999998874
No 343
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=95.86 E-value=0.0078 Score=54.38 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=23.4
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
.-+++.||+|||||++++.|++.+..
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 45899999999999999999998865
No 344
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.86 E-value=0.013 Score=58.16 Aligned_cols=40 Identities=20% Similarity=0.137 Sum_probs=30.6
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHH-h---CCcEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANY-L---KFNIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~-l---~~~i~~l~~~~ 279 (288)
|++...-+|++|+||+|||+++..++.+ + |.+++.+++.+
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee 70 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEE 70 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccC
Confidence 5666666999999999999999876643 2 66777777654
No 345
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=95.85 E-value=0.0056 Score=61.54 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=21.8
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHh
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
...+|+.||+||||||+.||||+..
T Consensus 419 G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 419 GERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3349999999999999999999865
No 346
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.85 E-value=0.0071 Score=60.91 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=27.9
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCC----cEEEEecCCC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKF----NIYDMELTSV 280 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~----~i~~l~~~~~ 280 (288)
+.|.|+||+||||+++++|..++. +++.++...+
T Consensus 395 Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v 432 (568)
T PRK05537 395 VFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV 432 (568)
T ss_pred EEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH
Confidence 678999999999999999999985 4566665444
No 347
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=95.85 E-value=0.024 Score=54.94 Aligned_cols=62 Identities=16% Similarity=0.209 Sum_probs=43.6
Q ss_pred ccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCCC
Q 045456 209 FDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSVY 281 (288)
Q Consensus 209 ~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~ 281 (288)
+..+++.....+.+.+.+.... .....+++.|++||||+.+|+++.... +.|++.+++..+.
T Consensus 138 ~~~lig~s~~~~~l~~~i~~~a-----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~ 202 (445)
T TIGR02915 138 LRGLITSSPGMQKICRTIEKIA-----------PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIP 202 (445)
T ss_pred ccceeecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCC
Confidence 4456665555555555443221 123468999999999999999998775 4689999988763
No 348
>PRK10646 ADP-binding protein; Provisional
Probab=95.85 E-value=0.011 Score=49.56 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=23.4
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
-++|.|+=|+|||++++++|+.||.
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4889999999999999999999986
No 349
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.84 E-value=0.0051 Score=55.79 Aligned_cols=40 Identities=28% Similarity=0.421 Sum_probs=29.1
Q ss_pred cccce--eEEEcCCCCChHHHHHHHHHHhCC--cEEEEecCCCC
Q 045456 242 VWKRG--YLLFGPPGTGKSSLIAAMANYLKF--NIYDMELTSVY 281 (288)
Q Consensus 242 ~~~rg--~LL~GPpGtGKTsla~aiA~~l~~--~i~~l~~~~~~ 281 (288)
..+.| .-+.||.|||||||.++|++.+.. --+.++..++.
T Consensus 24 ~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~ 67 (258)
T COG1120 24 SIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIA 67 (258)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchh
Confidence 34445 558899999999999999998863 24555555444
No 350
>PLN02748 tRNA dimethylallyltransferase
Probab=95.84 E-value=0.0083 Score=58.87 Aligned_cols=32 Identities=28% Similarity=0.522 Sum_probs=28.3
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhCCcEEEEec
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLKFNIYDMEL 277 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~ 277 (288)
-+++.||+|+|||+|+..||..++.+++..+.
T Consensus 24 ~i~i~GptgsGKs~la~~la~~~~~eii~~Ds 55 (468)
T PLN02748 24 VVVVMGPTGSGKSKLAVDLASHFPVEIINADS 55 (468)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence 47889999999999999999999988776664
No 351
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.83 E-value=0.0053 Score=54.22 Aligned_cols=29 Identities=28% Similarity=0.606 Sum_probs=22.8
Q ss_pred CCcccce--eEEEcCCCCChHHHHHHHHHHh
Q 045456 240 GKVWKRG--YLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 240 g~~~~rg--~LL~GPpGtGKTsla~aiA~~l 268 (288)
.....+| +.+.||+|+||||+.|+|...-
T Consensus 22 ~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 22 SLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred ceeEcCCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 3344455 7899999999999999998644
No 352
>PRK09354 recA recombinase A; Provisional
Probab=95.83 E-value=0.014 Score=55.27 Aligned_cols=40 Identities=18% Similarity=0.156 Sum_probs=28.8
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHH---hCCcEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANY---LKFNIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~---l~~~i~~l~~~~ 279 (288)
|++..+-++++||||||||+||..++.. .|-..+.++...
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~ 98 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEH 98 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCcc
Confidence 5555555889999999999998866543 366666666544
No 353
>PRK05439 pantothenate kinase; Provisional
Probab=95.82 E-value=0.018 Score=53.76 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=26.5
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCC-----cEEEEecCCC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKF-----NIYDMELTSV 280 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~-----~i~~l~~~~~ 280 (288)
+.+.||||+||||+|+.|+..++. .+..+...+.
T Consensus 89 IgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF 127 (311)
T PRK05439 89 IGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF 127 (311)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc
Confidence 668999999999999999997752 4555655544
No 354
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.82 E-value=0.02 Score=55.18 Aligned_cols=59 Identities=25% Similarity=0.380 Sum_probs=38.4
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
...+.-+|++++..+.-...... ...+-.. -|. ....++||||.|.|||.|+.|++++.
T Consensus 79 ~l~~~ytFdnFv~g~~N~~A~aa-~~~va~~------~g~-~~nplfi~G~~GlGKTHLl~Aign~~ 137 (408)
T COG0593 79 GLNPKYTFDNFVVGPSNRLAYAA-AKAVAEN------PGG-AYNPLFIYGGVGLGKTHLLQAIGNEA 137 (408)
T ss_pred cCCCCCchhheeeCCchHHHHHH-HHHHHhc------cCC-cCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 34555699999876654333222 2222211 122 23458999999999999999999987
No 355
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.81 E-value=0.0047 Score=53.77 Aligned_cols=23 Identities=35% Similarity=0.674 Sum_probs=21.1
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+.|.||+|+|||||+++|++.+.
T Consensus 31 ~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 31 LFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 77999999999999999998763
No 356
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.81 E-value=0.023 Score=50.30 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=22.5
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
.-+.|.||+|+|||++++.|++.+..
T Consensus 34 ~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 34 TIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 34668999999999999999998854
No 357
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.80 E-value=0.0099 Score=51.73 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=20.0
Q ss_pred ceeEEEcCCCCChHHHHHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIAAMAN 266 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~ 266 (288)
+-++|.||+|+|||++++.|+.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 5688999999999999999984
No 358
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=95.79 E-value=0.0091 Score=62.74 Aligned_cols=30 Identities=33% Similarity=0.389 Sum_probs=26.5
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhCCcEEEE
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLKFNIYDM 275 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (288)
-+.+-|||||||||+++.+|..|++.+++.
T Consensus 36 ~i~idG~~gsGKst~~~~la~~l~~~~~~~ 65 (863)
T PRK12269 36 IIALDGPAGSGKSSVCRLLASRLGAQCLNT 65 (863)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 367899999999999999999999887653
No 359
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=95.78 E-value=0.0063 Score=60.44 Aligned_cols=28 Identities=29% Similarity=0.502 Sum_probs=24.0
Q ss_pred CcccceeEEEcCCCCChHHHHHHHHHHh
Q 045456 241 KVWKRGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 241 ~~~~rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
++-...+|++||+|||||||.|++|+..
T Consensus 458 V~~g~~LLItG~sG~GKtSLlRvlggLW 485 (659)
T KOG0060|consen 458 VPSGQNLLITGPSGCGKTSLLRVLGGLW 485 (659)
T ss_pred ecCCCeEEEECCCCCchhHHHHHHhccc
Confidence 3445679999999999999999999765
No 360
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=95.76 E-value=0.0072 Score=47.24 Aligned_cols=21 Identities=38% Similarity=0.643 Sum_probs=19.3
Q ss_pred eEEEcCCCCChHHHHHHHHHH
Q 045456 247 YLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~ 267 (288)
+++.|+||+||||++.++.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 678999999999999999974
No 361
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=95.74 E-value=0.028 Score=50.70 Aligned_cols=40 Identities=28% Similarity=0.387 Sum_probs=30.0
Q ss_pred HHHHHhCCc-ccceeEEEcCCCCChHHHHHHHHHHhCCcEE
Q 045456 234 NFYRRVGKV-WKRGYLLFGPPGTGKSSLIAAMANYLKFNIY 273 (288)
Q Consensus 234 ~~~~~~g~~-~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~ 273 (288)
.++++.... .+.-+|+-|+||+||||+|.-+|..||.+..
T Consensus 78 ~lwR~ir~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~v 118 (299)
T COG2074 78 LLWRRIRKMKRPLIILIGGASGVGKSTIAGELARRLGIRSV 118 (299)
T ss_pred HHHHHHhccCCCeEEEecCCCCCChhHHHHHHHHHcCCcee
Confidence 344444332 2455888999999999999999999998654
No 362
>PTZ00035 Rad51 protein; Provisional
Probab=95.72 E-value=0.014 Score=55.04 Aligned_cols=29 Identities=28% Similarity=0.178 Sum_probs=23.0
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
|++...-+.++||||||||+++..+|...
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~ 142 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTC 142 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHh
Confidence 55554457799999999999999887543
No 363
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=95.71 E-value=0.025 Score=55.49 Aligned_cols=66 Identities=14% Similarity=0.155 Sum_probs=53.3
Q ss_pred CCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCCCC
Q 045456 206 PATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSVYC 282 (288)
Q Consensus 206 p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~ 282 (288)
...+..|+|.......+.+.++.-..+ .-.+||.|.+||||..+|++|.+.- +.||+.+|+..+-.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~S-----------d~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKS-----------DSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhcC-----------CCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 347888999998888888877753322 3469999999999999999999876 57999999987643
No 364
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.71 E-value=0.0081 Score=52.47 Aligned_cols=26 Identities=27% Similarity=0.648 Sum_probs=21.9
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
..-+.+.||+||||||+...+|+...
T Consensus 31 ge~vv~lGpSGcGKTTLLnl~AGf~~ 56 (259)
T COG4525 31 GELVVVLGPSGCGKTTLLNLIAGFVT 56 (259)
T ss_pred CCEEEEEcCCCccHHHHHHHHhcCcC
Confidence 33477899999999999999998764
No 365
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.70 E-value=0.0066 Score=52.73 Aligned_cols=25 Identities=28% Similarity=0.562 Sum_probs=21.9
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
.-+.|.||+|+|||++.++||+.+.
T Consensus 27 ~~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 27 EVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3478999999999999999998764
No 366
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=95.69 E-value=0.011 Score=56.76 Aligned_cols=50 Identities=30% Similarity=0.272 Sum_probs=39.2
Q ss_pred CCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 207 ATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 207 ~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-.|.-++|++..|..|.-... .+--.|+|+-|+.|||||++++|||..|.
T Consensus 14 ~pf~aivGqd~lk~aL~l~av-------------~P~iggvLI~G~kGtaKSt~~Rala~LLp 63 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAV-------------DPQIGGALIAGEKGTAKSTLARALADLLP 63 (423)
T ss_pred cchhhhcCchHHHHHHhhhhc-------------ccccceeEEecCCCccHHHHHHHHHHhCC
Confidence 367788899888887654322 12245899999999999999999999885
No 367
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.69 E-value=0.0079 Score=53.41 Aligned_cols=24 Identities=29% Similarity=0.609 Sum_probs=21.4
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++|++.+.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcC
Confidence 377999999999999999998763
No 368
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.69 E-value=0.007 Score=52.61 Aligned_cols=23 Identities=39% Similarity=0.748 Sum_probs=20.5
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+.|.||+|+|||||+++|++.+.
T Consensus 28 ~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 28 YGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 56899999999999999998763
No 369
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.69 E-value=0.0078 Score=52.26 Aligned_cols=23 Identities=30% Similarity=0.625 Sum_probs=21.0
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+.|.||+|+|||||+++||+.+.
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 29 FGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 77999999999999999998763
No 370
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.68 E-value=0.0076 Score=53.12 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.7
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||+|+++|++.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 488999999999999999998764
No 371
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=95.66 E-value=0.0093 Score=59.41 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=25.0
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhCCcEEE
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLKFNIYD 274 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (288)
-++|+|+||+|||++|+.++...|+.++.
T Consensus 371 LVil~G~pGSGKST~A~~l~~~~g~~~vn 399 (526)
T TIGR01663 371 MVIAVGFPGAGKSHFCKKFFQPAGYKHVN 399 (526)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEC
Confidence 47899999999999999999988766553
No 372
>PRK09862 putative ATP-dependent protease; Provisional
Probab=95.66 E-value=0.0096 Score=59.04 Aligned_cols=25 Identities=44% Similarity=0.806 Sum_probs=22.4
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
..++|.||||||||++++.|++.+.
T Consensus 211 ~~llliG~~GsGKTtLak~L~gllp 235 (506)
T PRK09862 211 HNLLLIGPPGTGKTMLASRINGLLP 235 (506)
T ss_pred cEEEEECCCCCcHHHHHHHHhccCC
Confidence 4599999999999999999998764
No 373
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.65 E-value=0.0057 Score=53.66 Aligned_cols=23 Identities=43% Similarity=0.605 Sum_probs=21.1
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+.|.||+|+|||||+++|++.+.
T Consensus 34 ~~i~G~nGsGKSTLl~~l~G~~~ 56 (228)
T cd03257 34 LGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999999999998763
No 374
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.65 E-value=0.018 Score=56.49 Aligned_cols=40 Identities=30% Similarity=0.357 Sum_probs=30.8
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~ 279 (288)
|++...-+++.|+||+|||+++..+|..+ +.+++.++..+
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE 132 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC
Confidence 55555558899999999999999887765 35677777654
No 375
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.65 E-value=0.0083 Score=52.14 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.5
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++||+.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 377999999999999999999864
No 376
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.64 E-value=0.0042 Score=54.85 Aligned_cols=35 Identities=31% Similarity=0.396 Sum_probs=26.1
Q ss_pred HHHHhCCcccce--eEEEcCCCCChHHHHHHHHHHhC
Q 045456 235 FYRRVGKVWKRG--YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 235 ~~~~~g~~~~rg--~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
.++........| +.|.||+|+|||||+++|++.+.
T Consensus 37 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 73 (224)
T cd03220 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP 73 (224)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344444444444 77999999999999999998753
No 377
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.63 E-value=0.0091 Score=50.61 Aligned_cols=25 Identities=36% Similarity=0.597 Sum_probs=22.0
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
.-+.+.||+|+|||+|+++||+.+.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC
Confidence 3488999999999999999998764
No 378
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.63 E-value=0.0085 Score=52.91 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=22.1
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
.-+.|.||+|+|||||+++||+.+.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 32 EIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3478999999999999999998874
No 379
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.63 E-value=0.007 Score=54.19 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=21.6
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
+=+.||+||||||+++++|+...-.
T Consensus 36 lgivGeSGsGKSTL~r~l~Gl~~p~ 60 (252)
T COG1124 36 LGIVGESGSGKSTLARLLAGLEKPS 60 (252)
T ss_pred EEEEcCCCCCHHHHHHHHhcccCCC
Confidence 5589999999999999999877543
No 380
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=95.63 E-value=0.022 Score=45.34 Aligned_cols=32 Identities=25% Similarity=0.464 Sum_probs=27.0
Q ss_pred eEEEcCCCCChHHHHHHHHHHh---CCcEEEEecC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYL---KFNIYDMELT 278 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 278 (288)
+++.|.+|+|||+++..+|..+ +.++..++..
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D 36 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDAD 36 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 6899999999999999999877 6777777653
No 381
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.61 E-value=0.0087 Score=51.70 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=21.6
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++||+.+.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 377999999999999999998764
No 382
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.61 E-value=0.011 Score=52.03 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=21.3
Q ss_pred eeEEEcCCCCChHHHHHHHHHHh
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l 268 (288)
-+.|.||+|+|||||+++|++.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 37799999999999999999987
No 383
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.60 E-value=0.016 Score=57.12 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=20.9
Q ss_pred eeEEEcCCCCChHHHHHHHHHHh
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l 268 (288)
-++|.||+|+||||++.-||..+
T Consensus 258 Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 258 VFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred EEEEECCCCccHHHHHHHHHHHH
Confidence 37799999999999999999876
No 384
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=95.60 E-value=0.0049 Score=54.78 Aligned_cols=34 Identities=21% Similarity=0.506 Sum_probs=25.4
Q ss_pred HHHhCCcccce--eEEEcCCCCChHHHHHHHHHHhC
Q 045456 236 YRRVGKVWKRG--YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 236 ~~~~g~~~~rg--~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
++.+......| +.|.||+|+|||||+++||+.+.
T Consensus 37 l~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~ 72 (236)
T cd03267 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ 72 (236)
T ss_pred eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 33333344444 77999999999999999998763
No 385
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.58 E-value=0.01 Score=50.07 Aligned_cols=24 Identities=29% Similarity=0.602 Sum_probs=21.7
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||++.++|++.+.
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 378999999999999999999864
No 386
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.58 E-value=0.0089 Score=54.64 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=23.7
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
+++++.||||+|||++.+++++.+..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 57999999999999999999998854
No 387
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.56 E-value=0.0055 Score=55.63 Aligned_cols=34 Identities=24% Similarity=0.546 Sum_probs=25.9
Q ss_pred HHHhCCcccce--eEEEcCCCCChHHHHHHHHHHhC
Q 045456 236 YRRVGKVWKRG--YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 236 ~~~~g~~~~rg--~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
++.+......| +.|.||+|+|||||+++|++.+.
T Consensus 40 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 75 (269)
T cd03294 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 33333444445 77999999999999999999874
No 388
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=95.56 E-value=0.034 Score=53.95 Aligned_cols=62 Identities=16% Similarity=0.178 Sum_probs=43.1
Q ss_pred ccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCCC
Q 045456 209 FDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSVY 281 (288)
Q Consensus 209 ~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~ 281 (288)
+..+++.......+.+.+..... ....+|++|++||||+++|+++.... +.|++.+++..+.
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a~-----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~ 206 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIAL-----------SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALP 206 (457)
T ss_pred ccceecccHHHhHHHHHHHHHcC-----------CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCC
Confidence 34455555544445444443221 23469999999999999999998764 5799999988764
No 389
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.54 E-value=0.0095 Score=52.76 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=21.4
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++||+.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcC
Confidence 377999999999999999998763
No 390
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.53 E-value=0.016 Score=54.12 Aligned_cols=40 Identities=15% Similarity=0.045 Sum_probs=29.0
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHH---------hCCcEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANY---------LKFNIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~---------l~~~i~~l~~~~ 279 (288)
|++...-.+++||||||||.++..+|-. .+-.++.++..+
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 5665555889999999999999877632 244667776554
No 391
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.53 E-value=0.012 Score=55.15 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=25.0
Q ss_pred ccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 243 WKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
.+.++||+||+|+||+++|+++|+.+.+
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC 50 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMC 50 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcC
Confidence 3568999999999999999999998854
No 392
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.53 E-value=0.0088 Score=51.80 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=21.1
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+.|.||+|+|||||.++||+.+.
T Consensus 29 ~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 29 IALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC
Confidence 78999999999999999998763
No 393
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.51 E-value=0.0079 Score=52.18 Aligned_cols=22 Identities=41% Similarity=0.658 Sum_probs=20.6
Q ss_pred eEEEcCCCCChHHHHHHHHHHh
Q 045456 247 YLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l 268 (288)
+.+.||+|+|||+|+++|++.+
T Consensus 37 ~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 37 IGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 7799999999999999999875
No 394
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=95.51 E-value=0.012 Score=59.63 Aligned_cols=34 Identities=29% Similarity=0.395 Sum_probs=29.3
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCC--cEEEEec
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKF--NIYDMEL 277 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~--~i~~l~~ 277 (288)
-.|+||.|+||||||++++++++.+.. ||..+..
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~ 51 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPL 51 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCc
Confidence 458999999999999999999998864 5777764
No 395
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.49 E-value=0.01 Score=52.13 Aligned_cols=23 Identities=30% Similarity=0.716 Sum_probs=21.2
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+.|.||+|+|||||.++||+.+.
T Consensus 32 ~~i~G~nGsGKSTLl~~l~G~~~ 54 (229)
T cd03254 32 VAIVGPTGAGKTTLINLLMRFYD 54 (229)
T ss_pred EEEECCCCCCHHHHHHHHhcCcC
Confidence 78999999999999999998863
No 396
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.49 E-value=0.011 Score=52.11 Aligned_cols=23 Identities=39% Similarity=0.650 Sum_probs=21.0
Q ss_pred eeEEEcCCCCChHHHHHHHHHHh
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l 268 (288)
-+.|.||+|+|||+|+++|++.+
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 35 FKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 37899999999999999999875
No 397
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.49 E-value=0.026 Score=52.17 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=20.4
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+-+.||+|+||||+++.|+..+.
T Consensus 65 IGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 65 ISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 55899999999999999988875
No 398
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.48 E-value=0.01 Score=51.49 Aligned_cols=23 Identities=39% Similarity=0.746 Sum_probs=21.0
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+.|.||+|+|||||+++|++.+.
T Consensus 30 ~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 30 VLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC
Confidence 77999999999999999998764
No 399
>PLN02796 D-glycerate 3-kinase
Probab=95.48 E-value=0.058 Score=50.97 Aligned_cols=33 Identities=18% Similarity=0.355 Sum_probs=25.5
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCC---cEEEEecCC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKF---NIYDMELTS 279 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~---~i~~l~~~~ 279 (288)
+-+.||+||||||++++|+..+.. ....++..+
T Consensus 103 IGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDd 138 (347)
T PLN02796 103 IGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDD 138 (347)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECC
Confidence 457899999999999999999853 355555443
No 400
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.48 E-value=0.01 Score=52.58 Aligned_cols=24 Identities=33% Similarity=0.681 Sum_probs=21.6
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++|++.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 377999999999999999998764
No 401
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.47 E-value=0.01 Score=51.74 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.5
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++|++.+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 377999999999999999999764
No 402
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.46 E-value=0.011 Score=50.87 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=21.1
Q ss_pred eeEEEcCCCCChHHHHHHHHHHh
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l 268 (288)
-+.|.||+|+|||+|+++||+.+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999976
No 403
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=95.46 E-value=0.011 Score=49.14 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=21.6
Q ss_pred cceeEEEcCCCCChHHHHHHHHHH
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~ 267 (288)
..-+++.||+|+|||+++.++.+.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 446999999999999999999986
No 404
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.46 E-value=0.011 Score=51.48 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=21.6
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++|++.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 378999999999999999998763
No 405
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.45 E-value=0.013 Score=49.51 Aligned_cols=23 Identities=35% Similarity=0.704 Sum_probs=21.2
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+.+.||+|+|||+|.++||+.+.
T Consensus 31 ~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 31 LAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred EEEECCCCCCHHHHHHHHHhccC
Confidence 78999999999999999998764
No 406
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.44 E-value=0.011 Score=51.79 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.5
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++||+.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 377999999999999999998764
No 407
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=95.44 E-value=0.0093 Score=50.49 Aligned_cols=27 Identities=33% Similarity=0.655 Sum_probs=22.1
Q ss_pred cce-eEEEcCCCCChHHHHHHHHHHhCC
Q 045456 244 KRG-YLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 244 ~rg-~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
..| .+++||.|+||||++.||.-.|+-
T Consensus 18 ~~g~~vi~G~Ng~GKStil~ai~~~L~~ 45 (202)
T PF13476_consen 18 SPGLNVIYGPNGSGKSTILEAIRYALGG 45 (202)
T ss_dssp -SEEEEEEESTTSSHHHHHHHHHHHHHS
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 335 578999999999999999987754
No 408
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.42 E-value=0.011 Score=50.54 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=21.4
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++|++.+.
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 377999999999999999998764
No 409
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=95.42 E-value=0.027 Score=47.63 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=24.0
Q ss_pred HHHhCCcccce-eEEEcCCCCChHHHHHHHHH
Q 045456 236 YRRVGKVWKRG-YLLFGPPGTGKSSLIAAMAN 266 (288)
Q Consensus 236 ~~~~g~~~~rg-~LL~GPpGtGKTsla~aiA~ 266 (288)
+..+|...+++ +++.||+|+|||+++.++.+
T Consensus 10 ~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 10 LSSLGLYNKEAKILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred HHHhhcccCCCEEEEECCCCCCHHHHHHHHhc
Confidence 44455544444 88999999999999999986
No 410
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.40 E-value=0.0096 Score=52.92 Aligned_cols=24 Identities=38% Similarity=0.616 Sum_probs=21.6
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++||+.+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~ 53 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLLEM 53 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 388999999999999999998763
No 411
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.39 E-value=0.015 Score=55.04 Aligned_cols=40 Identities=15% Similarity=0.086 Sum_probs=28.1
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh---------CCcEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL---------KFNIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---------~~~i~~l~~~~ 279 (288)
|++...-..++||||||||.+|..+|-.. +-.++.++...
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 55555557799999999999998876322 24566666543
No 412
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.39 E-value=0.011 Score=48.55 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=21.9
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
.-+.+.||+|+|||+++++|++.+.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC
Confidence 3478999999999999999998764
No 413
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.39 E-value=0.012 Score=52.55 Aligned_cols=24 Identities=33% Similarity=0.641 Sum_probs=21.6
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++||+.+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14247 31 ITALMGPSGSGKSTLLRVFNRLIE 54 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 377999999999999999999864
No 414
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.39 E-value=0.0096 Score=52.05 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.4
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++|++.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 378999999999999999998764
No 415
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.38 E-value=0.012 Score=51.73 Aligned_cols=23 Identities=43% Similarity=0.472 Sum_probs=18.4
Q ss_pred eeEEEcCCCCChHHHHHHHHHHh
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l 268 (288)
-+.+.||+|||||.+|.+.|-++
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 47789999999999999999765
No 416
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.38 E-value=0.0089 Score=52.26 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.9
Q ss_pred eeEEEcCCCCChHHHHHHHHHHh
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l 268 (288)
-+.+.||+|+|||+|+++||+.+
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 32 KVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37799999999999999999875
No 417
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=95.37 E-value=0.012 Score=51.88 Aligned_cols=25 Identities=24% Similarity=0.587 Sum_probs=22.2
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
.-+.|.||+|+|||||++.|++.+.
T Consensus 34 e~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 34 QVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred eEEEEECCCCCCHHHHHHHHhCccC
Confidence 3478999999999999999998875
No 418
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.37 E-value=0.013 Score=49.34 Aligned_cols=24 Identities=50% Similarity=0.731 Sum_probs=21.7
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.+.||+|+|||+++++|++.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 378999999999999999998764
No 419
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.37 E-value=0.029 Score=52.82 Aligned_cols=28 Identities=29% Similarity=0.485 Sum_probs=24.8
Q ss_pred ccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 243 WKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
.+.++||+||+|+||+++|.++|..+-+
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC 50 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMC 50 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcC
Confidence 3568999999999999999999998844
No 420
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.36 E-value=0.018 Score=54.23 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=24.2
Q ss_pred eeEEEcCCCCChHHHHHHHHHHh---CCcEEEEec
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYL---KFNIYDMEL 277 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~ 277 (288)
-+-+.||||+||||++.+++..+ |.++..+..
T Consensus 58 ~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~ 92 (332)
T PRK09435 58 RIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAV 92 (332)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 36689999999999999987776 445544443
No 421
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.36 E-value=0.011 Score=52.25 Aligned_cols=24 Identities=33% Similarity=0.646 Sum_probs=21.4
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++|++.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGFLR 51 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC
Confidence 377999999999999999998763
No 422
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.34 E-value=0.0093 Score=51.90 Aligned_cols=24 Identities=42% Similarity=0.670 Sum_probs=21.5
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++|++.+.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~~ 50 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC
Confidence 377999999999999999998763
No 423
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.33 E-value=0.012 Score=49.23 Aligned_cols=24 Identities=33% Similarity=0.528 Sum_probs=21.5
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||+|.++|++.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998763
No 424
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.32 E-value=0.012 Score=51.60 Aligned_cols=23 Identities=39% Similarity=0.676 Sum_probs=21.0
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+.|.||+|+|||||+++|++.+.
T Consensus 33 ~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 33 VALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 77999999999999999998763
No 425
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.31 E-value=0.039 Score=57.15 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=24.8
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh---C--CcEEEEec
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL---K--FNIYDMEL 277 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l---~--~~i~~l~~ 277 (288)
+-.++.|+||||||++++++...+ + .+++.+..
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~Ap 376 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAP 376 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeC
Confidence 357899999999999999987655 4 45555443
No 426
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.31 E-value=0.012 Score=49.98 Aligned_cols=23 Identities=39% Similarity=0.729 Sum_probs=20.9
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+.|.||+|+|||+|+++|++.+.
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 29 VALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 67999999999999999998764
No 427
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.29 E-value=0.012 Score=51.39 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=22.4
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
.-+.|.||+|+|||||+++|++.+.
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~~ 48 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEK 48 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCCC
Confidence 5678999999999999999998864
No 428
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.29 E-value=0.013 Score=49.89 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=21.7
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||+|.++||+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 378999999999999999999864
No 429
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.28 E-value=0.013 Score=52.03 Aligned_cols=24 Identities=33% Similarity=0.625 Sum_probs=21.5
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++|++.+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 377999999999999999998764
No 430
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.28 E-value=0.013 Score=51.19 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=21.0
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+.|.||+|+|||+|+++|++.+.
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 31 FGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 77999999999999999998764
No 431
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.013 Score=52.18 Aligned_cols=37 Identities=30% Similarity=0.528 Sum_probs=26.4
Q ss_pred HHHhCCcccce--eEEEcCCCCChHHHHHHHHHHhCCcE
Q 045456 236 YRRVGKVWKRG--YLLFGPPGTGKSSLIAAMANYLKFNI 272 (288)
Q Consensus 236 ~~~~g~~~~rg--~LL~GPpGtGKTsla~aiA~~l~~~i 272 (288)
++.+....+.| ..+.||.|+|||||+.+|++.-++.+
T Consensus 20 LkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~V 58 (251)
T COG0396 20 LKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEV 58 (251)
T ss_pred hcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceE
Confidence 33334444555 56899999999999999996555443
No 432
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.27 E-value=0.013 Score=51.82 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.5
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++|++.+.
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 377999999999999999998764
No 433
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.27 E-value=0.013 Score=51.09 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=21.4
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++|++.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcC
Confidence 378999999999999999998763
No 434
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=95.27 E-value=0.017 Score=50.20 Aligned_cols=23 Identities=39% Similarity=0.625 Sum_probs=20.5
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+.|.||.|+|||+++++|+..++
T Consensus 25 ~~i~G~nGsGKStll~al~~l~~ 47 (197)
T cd03278 25 TAIVGPNGSGKSNIIDAIRWVLG 47 (197)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 56899999999999999997764
No 435
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=95.27 E-value=0.017 Score=47.99 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=23.5
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
.-++|.|+=|.|||+++++||+.+|.
T Consensus 26 ~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 26 DVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 34889999999999999999999984
No 436
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.26 E-value=0.013 Score=50.52 Aligned_cols=24 Identities=38% Similarity=0.599 Sum_probs=21.7
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
.-+.|.||+|+|||+|.++||+.+
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 348899999999999999999977
No 437
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.26 E-value=0.015 Score=52.04 Aligned_cols=25 Identities=24% Similarity=0.500 Sum_probs=22.1
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
.-+.|.||+|+|||+|+++||+.+.
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (252)
T PRK14256 31 SVTAIIGPSGCGKSTVLRSINRMHD 55 (252)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccc
Confidence 3488999999999999999999863
No 438
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=95.26 E-value=0.013 Score=52.50 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=22.1
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
.-+.|.||+|+|||||+++|++.+.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G~~~ 54 (253)
T TIGR02323 30 EVLGIVGESGSGKSTLLGCLAGRLA 54 (253)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3488999999999999999999864
No 439
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.25 E-value=0.011 Score=53.06 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.7
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++|++.+.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (254)
T PRK14273 35 ITALIGPSGCGKSTFLRTLNRMND 58 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhcccc
Confidence 377999999999999999998775
No 440
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.24 E-value=0.014 Score=51.13 Aligned_cols=24 Identities=38% Similarity=0.670 Sum_probs=21.4
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||.++||+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~~ 51 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 377999999999999999998764
No 441
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.24 E-value=0.022 Score=53.25 Aligned_cols=40 Identities=20% Similarity=0.116 Sum_probs=28.8
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHhC---------CcEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYLK---------FNIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l~---------~~i~~l~~~~ 279 (288)
|++...-+.++||||+|||+++..+|.... -.++.++..+
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~ 140 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEG 140 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCC
Confidence 555555578999999999999998886322 2556666654
No 442
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.23 E-value=0.014 Score=50.36 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.5
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||+++++|++...
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 378999999999999999998763
No 443
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=95.23 E-value=0.013 Score=51.97 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.6
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||+|+++||+.+.
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~~~ 54 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIVP 54 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999999763
No 444
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.22 E-value=0.014 Score=51.43 Aligned_cols=24 Identities=29% Similarity=0.474 Sum_probs=21.3
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++||+.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLVK 51 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 377999999999999999998763
No 445
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.22 E-value=0.015 Score=51.35 Aligned_cols=23 Identities=35% Similarity=0.758 Sum_probs=21.1
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+.|.||+|+|||||+++||+.+.
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl~~ 53 (234)
T cd03251 31 VALVGPSGSGKSTLVNLIPRFYD 53 (234)
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 77999999999999999998863
No 446
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.21 E-value=0.014 Score=51.59 Aligned_cols=23 Identities=26% Similarity=0.590 Sum_probs=21.2
Q ss_pred eeEEEcCCCCChHHHHHHHHHHh
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l 268 (288)
-+.|.||+|+|||||+++||+.+
T Consensus 31 ~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred EEEEEeCCCCCHHHHHHHHhccC
Confidence 37899999999999999999886
No 447
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=95.21 E-value=0.043 Score=47.11 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.4
Q ss_pred ceeEEEcCCCCChHHHHHHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (288)
.-+.+.|+||+||||+..++.+.
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcc
Confidence 35889999999999999999875
No 448
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.21 E-value=0.014 Score=52.65 Aligned_cols=23 Identities=30% Similarity=0.811 Sum_probs=21.1
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+.|.||+|+|||||+++|++.+.
T Consensus 30 ~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 30 LVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 77999999999999999998763
No 449
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.21 E-value=0.017 Score=51.67 Aligned_cols=25 Identities=36% Similarity=0.675 Sum_probs=21.5
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
+.|+.||||||||++.+-||..+..
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~ 163 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSD 163 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhc
Confidence 4788999999999999999987643
No 450
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.20 E-value=0.015 Score=51.21 Aligned_cols=24 Identities=38% Similarity=0.564 Sum_probs=21.6
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++||+.+.
T Consensus 38 ~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 488999999999999999998764
No 451
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.20 E-value=0.014 Score=52.16 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=21.3
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++|++.+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~Gl~~ 54 (250)
T PRK14262 31 ITAIIGPSGCGKTTLLRSINRMND 54 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcccc
Confidence 377999999999999999998654
No 452
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.20 E-value=0.015 Score=49.42 Aligned_cols=24 Identities=42% Similarity=0.675 Sum_probs=21.5
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||+++++|++.+.
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~~~ 50 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 378999999999999999998763
No 453
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.19 E-value=0.011 Score=52.31 Aligned_cols=25 Identities=32% Similarity=0.683 Sum_probs=22.3
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
.-+.|.||+|+|||+|.++||+.+.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~g~~~ 51 (232)
T cd03300 27 EFFTLLGPSGCGKTTLLRLIAGFET 51 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3488999999999999999999874
No 454
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.19 E-value=0.022 Score=47.15 Aligned_cols=26 Identities=46% Similarity=0.640 Sum_probs=22.7
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
.-+.+.||+|+|||+++++|++.+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~ 51 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKP 51 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34789999999999999999998754
No 455
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.18 E-value=0.014 Score=50.50 Aligned_cols=24 Identities=29% Similarity=0.610 Sum_probs=21.4
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.+.||+|+|||+|+++|++.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcC
Confidence 377999999999999999998763
No 456
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.18 E-value=0.025 Score=48.12 Aligned_cols=22 Identities=45% Similarity=0.815 Sum_probs=19.6
Q ss_pred eEEEcCCCCChHHHHHHHHHHh
Q 045456 247 YLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l 268 (288)
.++.||||+|||+++..+|..+
T Consensus 35 ~~i~g~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 35 TLIAGPPGSGKTTLALQLAAAL 56 (193)
T ss_dssp EEEEECSTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 7789999999999998888765
No 457
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.18 E-value=0.015 Score=49.11 Aligned_cols=24 Identities=46% Similarity=0.748 Sum_probs=21.4
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.+.||+|+|||+|.++||+.+.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 377999999999999999998763
No 458
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=95.18 E-value=0.014 Score=52.23 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=21.5
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++|++.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~ 51 (252)
T TIGR03005 28 KVALIGPSGSGKSTILRILMTLEP 51 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 378999999999999999998764
No 459
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.16 E-value=0.017 Score=55.66 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=21.9
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
+++.||||||||++++.|++.+..
T Consensus 171 ~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 171 GLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred EEEECCCCCChhHHHHHHHHhhcc
Confidence 899999999999999999998643
No 460
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.16 E-value=0.015 Score=51.85 Aligned_cols=23 Identities=26% Similarity=0.603 Sum_probs=21.1
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+.|.||+|+|||||+++|++.+.
T Consensus 32 ~~i~G~nGsGKSTLl~~l~G~~~ 54 (250)
T PRK11264 32 VAIIGPSGSGKTTLLRCINLLEQ 54 (250)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC
Confidence 77999999999999999998764
No 461
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.16 E-value=0.018 Score=51.73 Aligned_cols=24 Identities=29% Similarity=0.576 Sum_probs=21.7
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++||+.+.
T Consensus 40 ~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 40 VTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 378999999999999999998764
No 462
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.15 E-value=0.015 Score=51.55 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=21.4
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++|++.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcC
Confidence 477999999999999999998763
No 463
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.15 E-value=0.02 Score=48.32 Aligned_cols=28 Identities=39% Similarity=0.510 Sum_probs=22.0
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhCCcE
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLKFNI 272 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i 272 (288)
+-.+|.||+|+|||||+.++........
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t 63 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKT 63 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhh
Confidence 5789999999999999999998765443
No 464
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.15 E-value=0.033 Score=55.24 Aligned_cols=40 Identities=23% Similarity=0.193 Sum_probs=31.0
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~ 279 (288)
|++...-++++||||+|||+++..++.+. |.+++.++..+
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~ 311 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEE 311 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 56555558899999999999998887543 67787777654
No 465
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=95.15 E-value=0.015 Score=50.76 Aligned_cols=26 Identities=31% Similarity=0.666 Sum_probs=22.6
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
..-+.|.||+|+|||+++++|++.+.
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (213)
T TIGR01277 24 GEIVAIMGPSGAGKSTLLNLIAGFIE 49 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34488999999999999999998863
No 466
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.14 E-value=0.014 Score=51.73 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.5
Q ss_pred eEEEcCCCCChHHHHHHHHHHh
Q 045456 247 YLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l 268 (288)
+.|.||+|+|||||+++|++.+
T Consensus 29 ~~i~G~nGsGKSTLl~~l~Gl~ 50 (243)
T TIGR01978 29 HAIMGPNGSGKSTLSKTIAGHP 50 (243)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999874
No 467
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=95.13 E-value=0.036 Score=52.33 Aligned_cols=26 Identities=27% Similarity=0.630 Sum_probs=23.5
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
++.+++.||+|+|||++.+++..++.
T Consensus 178 ~~~ili~G~tGsGKTTll~al~~~i~ 203 (340)
T TIGR03819 178 RLAFLISGGTGSGKTTLLSALLALVA 203 (340)
T ss_pred CCeEEEECCCCCCHHHHHHHHHccCC
Confidence 56799999999999999999998875
No 468
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.13 E-value=0.016 Score=50.12 Aligned_cols=24 Identities=42% Similarity=0.635 Sum_probs=21.4
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.+.||+|+|||+++++|++.+.
T Consensus 33 ~~~i~G~nG~GKSTLl~~i~G~~~ 56 (204)
T cd03250 33 LVAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCC
Confidence 378999999999999999998764
No 469
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.13 E-value=0.018 Score=52.17 Aligned_cols=38 Identities=32% Similarity=0.582 Sum_probs=26.7
Q ss_pred eEEEcCCCCChHHHHHHHHHHh-----CCcEEEEecCCCCCcc
Q 045456 247 YLLFGPPGTGKSSLIAAMANYL-----KFNIYDMELTSVYCNS 284 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~~~~~~~~~ 284 (288)
+=+.||||.|||||+.+++.++ ..-++-++.++-.+..
T Consensus 32 iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGG 74 (266)
T PF03308_consen 32 IGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGG 74 (266)
T ss_dssp EEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC--
T ss_pred EEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCC
Confidence 3379999999999999999877 3457777877766543
No 470
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.13 E-value=0.016 Score=50.66 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=21.0
Q ss_pred eeEEEcCCCCChHHHHHHHHHHh
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l 268 (288)
-+.|.||+|+|||+|+++|++.+
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 32 KVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 37799999999999999999876
No 471
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.13 E-value=0.027 Score=57.31 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=19.6
Q ss_pred eeEEEcCCCCChHHHHHHHHHHh
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l 268 (288)
-.++.|+||||||++++.+...+
T Consensus 169 ~~vItGgpGTGKTt~v~~ll~~l 191 (615)
T PRK10875 169 ISVISGGPGTGKTTTVAKLLAAL 191 (615)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHH
Confidence 47889999999999988877655
No 472
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=95.11 E-value=0.019 Score=56.30 Aligned_cols=40 Identities=30% Similarity=0.503 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHHhhcHHHHHHhCCcccce--eEEEcCCCCChHHHHH
Q 045456 217 SMKQASIDDLDRFVKRRNFYRRVGKVWKRG--YLLFGPPGTGKSSLIA 262 (288)
Q Consensus 217 ~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg--~LL~GPpGtGKTsla~ 262 (288)
.+++.|..+++..+.. +....+.| +.|+||+||||||+.+
T Consensus 9 hi~r~Ie~~l~~vL~~------Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 9 YVKRKIQTDLERILVK------FNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred eechHHHHHHHHHHhC------CceeecCCCEEEEECCCCCCHHHHHh
Confidence 4566777777766643 22333444 8899999999999999
No 473
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.11 E-value=0.015 Score=51.35 Aligned_cols=24 Identities=38% Similarity=0.786 Sum_probs=21.5
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++|++.+.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (232)
T PRK10771 27 RVAILGPSGAGKSTLLNLIAGFLT 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 477999999999999999998763
No 474
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.11 E-value=0.016 Score=50.28 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.5
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||+|+++|++.+.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~ 52 (204)
T PRK13538 29 LVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 377999999999999999998764
No 475
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.11 E-value=0.037 Score=51.83 Aligned_cols=28 Identities=25% Similarity=0.265 Sum_probs=24.7
Q ss_pred ccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 243 WKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
.+.++||+||.|+||+++|.++|+.+-+
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC 51 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLC 51 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 3568999999999999999999998743
No 476
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.10 E-value=0.017 Score=50.55 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=21.6
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||+|.++||+.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~i~G~~~ 52 (218)
T cd03290 29 LTMIVGQVGCGKSSLLLAILGEMQ 52 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 378999999999999999998863
No 477
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.10 E-value=0.019 Score=51.36 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=21.3
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++|++.++
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (253)
T PRK14242 34 VTALIGPSGCGKSTFLRCLNRMND 57 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 378999999999999999998753
No 478
>PLN02348 phosphoribulokinase
Probab=95.10 E-value=0.028 Score=53.89 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.6
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
+-+.|+|||||||+++.|++.++.
T Consensus 52 IGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 52 IGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhh
Confidence 458999999999999999999973
No 479
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.09 E-value=0.014 Score=51.09 Aligned_cols=24 Identities=33% Similarity=0.628 Sum_probs=21.4
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||+|+++|++.+.
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~~~ 62 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998763
No 480
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.08 E-value=0.013 Score=52.53 Aligned_cols=24 Identities=29% Similarity=0.635 Sum_probs=21.5
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++|++.+.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (255)
T PRK11300 33 IVSLIGPNGAGKTTVFNCLTGFYK 56 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcC
Confidence 478999999999999999998763
No 481
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.08 E-value=0.042 Score=47.82 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=22.6
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
.+.+.|.|++|+|||+++..++.+++
T Consensus 22 ~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 22 LVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34688999999999999999998865
No 482
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.08 E-value=0.017 Score=50.31 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=21.4
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++|++.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 377999999999999999998763
No 483
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.08 E-value=0.018 Score=50.60 Aligned_cols=24 Identities=38% Similarity=0.739 Sum_probs=21.5
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||+|+++|++.+.
T Consensus 42 ~~~i~G~nGsGKSTLl~~l~Gl~~ 65 (226)
T cd03248 42 VTALVGPSGSGKSTVVALLENFYQ 65 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcC
Confidence 378999999999999999998863
No 484
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.08 E-value=0.016 Score=52.38 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.5
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++|++.+.
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl~~ 63 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGLET 63 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 378999999999999999998764
No 485
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.07 E-value=0.017 Score=51.70 Aligned_cols=24 Identities=38% Similarity=0.750 Sum_probs=21.5
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++|++.+.
T Consensus 32 ~~~l~G~nGsGKSTLl~~l~G~~~ 55 (253)
T PRK14267 32 VFALMGPSGCGKSTLLRTFNRLLE 55 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 377999999999999999998864
No 486
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.07 E-value=0.023 Score=47.79 Aligned_cols=25 Identities=40% Similarity=0.567 Sum_probs=22.0
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
+-|.||+|||||++...|++.|.-.
T Consensus 31 vtlMGPSGcGKSTLls~~~G~La~~ 55 (213)
T COG4136 31 VTLMGPSGCGKSTLLSWMIGALAGQ 55 (213)
T ss_pred EEEECCCCccHHHHHHHHHhhcccC
Confidence 5689999999999999999988644
No 487
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.07 E-value=0.016 Score=52.89 Aligned_cols=24 Identities=42% Similarity=0.567 Sum_probs=21.7
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++||+.+.
T Consensus 29 ~~~l~G~nGsGKSTLl~~laG~~~ 52 (272)
T PRK13547 29 VTALLGRNGAGKSTLLKALAGDLT 52 (272)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 378999999999999999999764
No 488
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.06 E-value=0.017 Score=50.26 Aligned_cols=24 Identities=38% Similarity=0.722 Sum_probs=21.3
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+||||++++|++.+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 377999999999999999998763
No 489
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.06 E-value=0.017 Score=49.66 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=20.1
Q ss_pred eeEEEcCCCCChHHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (288)
-+.|.||+|+|||||+++|++.
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999975
No 490
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=95.06 E-value=0.017 Score=51.32 Aligned_cols=24 Identities=29% Similarity=0.632 Sum_probs=21.4
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++|++.+.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~ 52 (240)
T PRK09493 29 VVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 377999999999999999998764
No 491
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=95.05 E-value=0.014 Score=55.26 Aligned_cols=25 Identities=32% Similarity=0.499 Sum_probs=22.0
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
-+.|.||+|||||||.++||+....
T Consensus 34 ~~~llGpsGsGKSTLLr~IaGl~~p 58 (351)
T PRK11432 34 MVTLLGPSGCGKTTVLRLVAGLEKP 58 (351)
T ss_pred EEEEECCCCCcHHHHHHHHHCCCCC
Confidence 3779999999999999999988743
No 492
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.04 E-value=0.017 Score=51.07 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=21.2
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+.|.||+|+|||+|+++||+.+.
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl~~ 53 (237)
T cd03252 31 VGIVGRSGSGKSTLTKLIQRFYV 53 (237)
T ss_pred EEEECCCCCCHHHHHHHHhcCcC
Confidence 78999999999999999998863
No 493
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=95.03 E-value=0.016 Score=50.90 Aligned_cols=24 Identities=42% Similarity=0.768 Sum_probs=21.4
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||+|.++|++.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~ 51 (223)
T TIGR03740 28 VYGLLGPNGAGKSTLLKMITGILR 51 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 377999999999999999998763
No 494
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.03 E-value=0.017 Score=51.33 Aligned_cols=24 Identities=25% Similarity=0.607 Sum_probs=21.4
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++|++.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~ 52 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 377999999999999999998764
No 495
>COG4240 Predicted kinase [General function prediction only]
Probab=95.03 E-value=0.057 Score=48.23 Aligned_cols=64 Identities=23% Similarity=0.245 Sum_probs=38.7
Q ss_pred ChhhhHHHHHHHHHHhhc--HHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh---C-CcEEEEecCCC
Q 045456 215 DPSMKQASIDDLDRFVKR--RNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL---K-FNIYDMELTSV 280 (288)
Q Consensus 215 ~~~~k~~i~~~l~~~~~~--~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~-~~i~~l~~~~~ 280 (288)
.+..+-.+..++...+.. ..+..+.|.|. -+-+.||.|+|||+++.+|-++| | ..+..+++.++
T Consensus 21 ~p~~~~~~~~dl~Lpll~Kiap~~qe~grPl--i~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDl 90 (300)
T COG4240 21 LPPAFAALAQDLHLPLLAKIAPWAQERGRPL--IVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDL 90 (300)
T ss_pred CcHHHHHHHHHHHHHHHHhhhhhhhhcCCce--EEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhh
Confidence 344444454444443322 23334445432 24468999999999999988776 3 46667766655
No 496
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.02 E-value=0.018 Score=50.88 Aligned_cols=24 Identities=25% Similarity=0.638 Sum_probs=21.4
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||+|+++|++.+.
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~Gl~~ 52 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRFYD 52 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 377999999999999999998763
No 497
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.01 E-value=0.017 Score=51.38 Aligned_cols=24 Identities=38% Similarity=0.728 Sum_probs=21.4
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++||+.+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRLID 54 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 377999999999999999998763
No 498
>PRK10908 cell division protein FtsE; Provisional
Probab=95.01 E-value=0.018 Score=50.54 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.5
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++|++.+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 377999999999999999998764
No 499
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.01 E-value=0.072 Score=49.32 Aligned_cols=60 Identities=15% Similarity=0.275 Sum_probs=39.3
Q ss_pred ccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhC---------CcEEEEecCC
Q 045456 213 AMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK---------FNIYDMELTS 279 (288)
Q Consensus 213 ~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~---------~~i~~l~~~~ 279 (288)
++.+..++ +.+.++..+..|.. .-..++||+|++|.|||++++..+.... .|++.+..+.
T Consensus 37 IgY~~A~~-~L~~L~~Ll~~P~~------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~ 105 (302)
T PF05621_consen 37 IGYPRAKE-ALDRLEELLEYPKR------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPP 105 (302)
T ss_pred ecCHHHHH-HHHHHHHHHhCCcc------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCC
Confidence 44455544 44556665655431 2235799999999999999999986552 3566666544
No 500
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.99 E-value=0.017 Score=51.22 Aligned_cols=24 Identities=21% Similarity=0.564 Sum_probs=21.3
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||.++|++.+.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~G~~~ 53 (242)
T TIGR03411 30 LRVIIGPNGAGKTTMMDVITGKTR 53 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 377999999999999999998763
Done!