Query 045456
Match_columns 288
No_of_seqs 339 out of 2144
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 23:50:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045456.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045456hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 99.8 4.4E-19 1.5E-23 168.1 9.2 82 202-283 140-221 (405)
2 4b4t_M 26S protease regulatory 99.8 4E-19 1.4E-23 170.2 9.1 83 201-283 172-254 (434)
3 4b4t_I 26S protease regulatory 99.8 5.7E-19 2E-23 168.1 9.7 83 201-283 173-255 (437)
4 4b4t_K 26S protease regulatory 99.8 8.4E-19 2.9E-23 167.8 10.1 82 202-283 164-245 (428)
5 4b4t_L 26S protease subunit RP 99.8 9E-19 3.1E-23 167.9 9.7 81 203-283 174-254 (437)
6 4b4t_H 26S protease regulatory 99.7 1.7E-18 5.7E-23 166.3 9.0 82 202-283 201-282 (467)
7 3cf2_A TER ATPase, transitiona 99.5 2.2E-15 7.5E-20 153.8 5.4 79 205-283 199-277 (806)
8 2x8a_A Nuclear valosin-contain 99.5 2.9E-14 1E-18 128.6 8.4 79 205-283 5-83 (274)
9 3cf0_A Transitional endoplasmi 99.5 4.4E-14 1.5E-18 128.7 7.9 78 203-280 8-85 (301)
10 3h4m_A Proteasome-activating n 99.5 1.4E-13 4.8E-18 123.3 9.4 81 203-283 10-90 (285)
11 1xwi_A SKD1 protein; VPS4B, AA 99.4 2E-13 6.7E-18 125.8 9.3 79 204-283 6-85 (322)
12 3cf2_A TER ATPase, transitiona 99.4 1.4E-14 4.7E-19 147.9 0.8 80 204-283 471-550 (806)
13 2qz4_A Paraplegin; AAA+, SPG7, 99.4 2.9E-13 9.8E-18 119.4 8.8 76 206-282 2-77 (262)
14 1lv7_A FTSH; alpha/beta domain 99.4 3.2E-13 1.1E-17 119.5 8.4 79 203-282 5-83 (257)
15 3eie_A Vacuolar protein sortin 99.4 1.5E-13 5E-18 126.3 5.4 81 201-282 9-89 (322)
16 2r62_A Cell division protease 99.4 4.4E-13 1.5E-17 119.1 7.0 78 204-282 5-82 (268)
17 3b9p_A CG5977-PA, isoform A; A 99.4 1E-12 3.5E-17 118.4 8.8 81 202-283 13-93 (297)
18 2qp9_X Vacuolar protein sortin 99.4 3.1E-13 1.1E-17 126.1 5.5 79 203-282 44-122 (355)
19 2ce7_A Cell division protein F 99.3 3.4E-12 1.2E-16 123.6 9.7 77 205-282 11-87 (476)
20 2zan_A Vacuolar protein sortin 99.3 1.8E-12 6.1E-17 124.5 7.3 80 203-283 127-207 (444)
21 3vfd_A Spastin; ATPase, microt 99.3 2.3E-12 7.7E-17 121.3 7.8 82 201-283 106-187 (389)
22 3d8b_A Fidgetin-like protein 1 99.3 2.5E-12 8.5E-17 119.9 7.6 80 203-283 77-156 (357)
23 3hu3_A Transitional endoplasmi 99.3 2.5E-12 8.6E-17 125.0 7.3 78 205-282 199-276 (489)
24 1ixz_A ATP-dependent metallopr 99.2 1.3E-11 4.6E-16 108.9 8.5 77 203-280 9-85 (254)
25 2dhr_A FTSH; AAA+ protein, hex 99.2 1.5E-11 5E-16 119.8 8.4 77 205-282 26-102 (499)
26 1ypw_A Transitional endoplasmi 99.2 1.4E-11 4.9E-16 126.3 6.8 79 204-282 198-276 (806)
27 1iy2_A ATP-dependent metallopr 99.2 5.2E-11 1.8E-15 106.8 8.7 78 202-280 32-109 (278)
28 1sxj_A Activator 1 95 kDa subu 99.1 3.9E-11 1.3E-15 117.2 5.9 87 195-283 26-116 (516)
29 2c9o_A RUVB-like 1; hexameric 99.1 1.2E-10 4E-15 112.0 8.2 70 206-283 33-104 (456)
30 3t15_A Ribulose bisphosphate c 99.0 9.2E-11 3.1E-15 106.5 3.7 44 239-282 31-74 (293)
31 1g41_A Heat shock protein HSLU 99.0 3.2E-10 1.1E-14 108.7 7.2 73 210-282 15-88 (444)
32 1ypw_A Transitional endoplasmi 99.0 5.7E-11 2E-15 121.9 1.0 81 203-283 470-550 (806)
33 3pfi_A Holliday junction ATP-d 99.0 9.5E-10 3.2E-14 100.7 8.5 79 196-284 17-95 (338)
34 3u61_B DNA polymerase accessor 98.9 7.8E-10 2.7E-14 100.8 6.6 73 195-281 13-85 (324)
35 1hqc_A RUVB; extended AAA-ATPa 98.9 2E-09 6.9E-14 97.6 7.9 76 203-286 5-80 (324)
36 3syl_A Protein CBBX; photosynt 98.9 3.5E-09 1.2E-13 95.5 8.5 73 209-282 29-112 (309)
37 1ofh_A ATP-dependent HSL prote 98.8 3.2E-09 1.1E-13 95.3 6.0 73 210-282 15-88 (310)
38 3uk6_A RUVB-like 2; hexameric 98.8 7.5E-09 2.6E-13 95.5 8.3 71 203-281 36-109 (368)
39 3hws_A ATP-dependent CLP prote 98.8 3.3E-09 1.1E-13 98.6 5.8 71 212-282 17-89 (363)
40 1um8_A ATP-dependent CLP prote 98.8 1.4E-08 4.9E-13 94.6 9.0 70 211-281 22-109 (376)
41 3pvs_A Replication-associated 98.7 1.9E-08 6.4E-13 96.7 8.2 66 202-280 18-86 (447)
42 2chq_A Replication factor C sm 98.7 8.5E-09 2.9E-13 92.7 5.5 73 197-284 6-83 (319)
43 3ec2_A DNA replication protein 98.7 1.2E-08 3.9E-13 85.2 5.8 70 204-279 4-77 (180)
44 1jbk_A CLPB protein; beta barr 98.7 2.3E-08 8E-13 82.3 6.4 64 204-280 16-89 (195)
45 1d2n_A N-ethylmaleimide-sensit 98.7 4E-08 1.4E-12 87.3 8.3 67 210-279 33-99 (272)
46 1sxj_D Activator 1 41 kDa subu 98.7 1.4E-08 5E-13 92.8 5.4 72 196-282 25-102 (353)
47 3n70_A Transport activator; si 98.7 2.7E-08 9.4E-13 80.5 6.5 61 211-283 2-65 (145)
48 2chg_A Replication factor C sm 98.7 3.3E-08 1.1E-12 83.3 7.1 68 202-282 9-81 (226)
49 1in4_A RUVB, holliday junction 98.7 4.7E-08 1.6E-12 90.0 8.4 76 201-284 16-91 (334)
50 2p65_A Hypothetical protein PF 98.6 2.5E-08 8.6E-13 82.1 5.4 65 203-280 15-89 (187)
51 2bjv_A PSP operon transcriptio 98.6 3.6E-08 1.2E-12 87.2 6.7 64 207-281 3-69 (265)
52 2r44_A Uncharacterized protein 98.6 3.4E-08 1.2E-12 90.2 6.4 58 206-278 23-80 (331)
53 3co5_A Putative two-component 98.6 1.1E-08 3.8E-13 82.7 2.3 58 211-280 5-62 (143)
54 1iqp_A RFCS; clamp loader, ext 98.6 3.8E-08 1.3E-12 88.8 5.8 70 196-280 13-87 (327)
55 1sxj_C Activator 1 40 kDa subu 98.6 6.9E-08 2.4E-12 88.7 7.4 71 196-281 13-88 (340)
56 2w58_A DNAI, primosome compone 98.6 6.5E-08 2.2E-12 81.9 6.6 69 205-279 20-92 (202)
57 1sxj_B Activator 1 37 kDa subu 98.6 6.3E-08 2.2E-12 87.1 6.6 72 196-282 9-85 (323)
58 3bos_A Putative DNA replicatio 98.5 1.2E-07 4.1E-12 81.4 7.2 69 203-281 21-92 (242)
59 1jr3_A DNA polymerase III subu 98.5 1.3E-07 4.5E-12 87.0 7.8 57 202-270 8-64 (373)
60 1sxj_E Activator 1 40 kDa subu 98.5 6.2E-08 2.1E-12 88.9 4.7 58 197-268 3-60 (354)
61 3pxg_A Negative regulator of g 98.5 1.1E-07 3.7E-12 91.7 6.2 63 203-278 173-245 (468)
62 1njg_A DNA polymerase III subu 98.5 2E-07 7E-12 79.1 6.6 57 202-270 15-71 (250)
63 3m6a_A ATP-dependent protease 98.5 1.7E-07 5.9E-12 92.0 6.6 71 208-285 79-149 (543)
64 1l8q_A Chromosomal replication 98.4 2.7E-07 9.2E-12 84.0 7.1 70 203-280 4-76 (324)
65 2v1u_A Cell division control p 98.4 1.7E-07 5.9E-12 86.1 4.9 66 208-282 17-91 (387)
66 4fcw_A Chaperone protein CLPB; 98.4 3.6E-07 1.2E-11 82.1 6.8 70 210-283 17-89 (311)
67 1g8p_A Magnesium-chelatase 38 98.4 1.9E-07 6.5E-12 85.3 4.9 55 203-270 17-71 (350)
68 2qgz_A Helicase loader, putati 98.4 3.3E-07 1.1E-11 83.6 6.2 68 206-279 120-191 (308)
69 2qby_B CDC6 homolog 3, cell di 98.4 2.8E-07 9.4E-12 85.1 5.7 63 210-281 20-93 (384)
70 1fnn_A CDC6P, cell division co 98.4 1.2E-06 4E-11 80.8 9.3 67 209-282 16-86 (389)
71 1tue_A Replication protein E1; 98.4 3.5E-07 1.2E-11 79.0 5.2 35 240-274 54-88 (212)
72 3pxi_A Negative regulator of g 98.3 4.9E-07 1.7E-11 91.9 6.9 62 203-277 173-244 (758)
73 3te6_A Regulatory protein SIR3 98.3 3.9E-07 1.3E-11 83.8 5.0 41 243-283 44-94 (318)
74 1r6b_X CLPA protein; AAA+, N-t 98.3 1.4E-06 4.7E-11 88.5 8.5 65 211-283 459-527 (758)
75 3pxi_A Negative regulator of g 98.3 1.3E-06 4.3E-11 88.9 8.1 67 210-284 491-564 (758)
76 1qvr_A CLPB protein; coiled co 98.3 8.2E-07 2.8E-11 91.5 6.7 66 204-282 164-239 (854)
77 1ojl_A Transcriptional regulat 98.3 1.1E-06 3.6E-11 80.0 6.4 60 211-281 3-65 (304)
78 2qby_A CDC6 homolog 1, cell di 98.2 6.4E-07 2.2E-11 82.2 3.7 63 208-279 18-86 (386)
79 1u0j_A DNA replication protein 98.2 1.7E-06 5.7E-11 77.6 5.9 29 242-270 102-130 (267)
80 2z4s_A Chromosomal replication 98.2 3.2E-06 1.1E-10 80.8 8.3 68 203-280 98-171 (440)
81 1r6b_X CLPA protein; AAA+, N-t 98.1 3E-06 1E-10 86.0 7.4 67 203-282 179-255 (758)
82 3cmw_A Protein RECA, recombina 98.1 2.3E-06 7.7E-11 93.4 6.7 73 207-279 1017-1120(1706)
83 1qvr_A CLPB protein; coiled co 98.1 4.9E-06 1.7E-10 85.7 7.1 66 210-283 558-630 (854)
84 3nbx_X ATPase RAVA; AAA+ ATPas 98.0 6.6E-06 2.3E-10 80.0 6.1 34 244-277 41-76 (500)
85 3vaa_A Shikimate kinase, SK; s 98.0 4E-06 1.4E-10 71.0 3.9 33 244-276 25-57 (199)
86 3k1j_A LON protease, ATP-depen 97.9 6.2E-06 2.1E-10 81.8 4.8 54 202-270 33-86 (604)
87 2kjq_A DNAA-related protein; s 97.9 1.1E-05 3.9E-10 65.6 5.4 39 244-282 36-77 (149)
88 2gno_A DNA polymerase III, gam 97.8 1.4E-05 4.7E-10 72.8 5.3 36 244-279 18-59 (305)
89 1svm_A Large T antigen; AAA+ f 97.8 2.3E-05 8E-10 73.5 7.0 39 239-277 164-202 (377)
90 1w5s_A Origin recognition comp 97.7 3.2E-05 1.1E-09 71.7 5.9 64 208-279 20-96 (412)
91 2cdn_A Adenylate kinase; phosp 97.7 1.9E-05 6.6E-10 66.5 3.4 30 246-275 22-51 (201)
92 1a5t_A Delta prime, HOLB; zinc 97.7 4.8E-05 1.6E-09 69.7 5.9 28 243-270 23-50 (334)
93 4akg_A Glutathione S-transfera 97.6 6.2E-05 2.1E-09 85.4 7.4 43 244-286 1267-1310(2695)
94 1gvn_B Zeta; postsegregational 97.6 7.7E-05 2.6E-09 67.2 6.6 34 244-277 33-66 (287)
95 3t61_A Gluconokinase; PSI-biol 97.6 3.1E-05 1E-09 65.3 3.7 33 244-276 18-50 (202)
96 2p5t_B PEZT; postsegregational 97.6 4.8E-05 1.6E-09 66.9 4.5 37 244-280 32-68 (253)
97 2ga8_A Hypothetical 39.9 kDa p 97.6 9E-06 3.1E-10 75.7 -0.5 33 245-277 25-57 (359)
98 1ak2_A Adenylate kinase isoenz 97.5 6.6E-05 2.3E-09 65.0 4.4 33 244-276 16-48 (233)
99 4eun_A Thermoresistant glucoki 97.5 8.5E-05 2.9E-09 62.7 4.8 30 245-274 30-59 (200)
100 3upu_A ATP-dependent DNA helic 97.5 0.00013 4.5E-09 69.7 6.4 68 195-277 11-82 (459)
101 3f9v_A Minichromosome maintena 97.5 1.9E-05 6.6E-10 78.3 0.3 29 246-274 329-357 (595)
102 3umf_A Adenylate kinase; rossm 97.4 8.2E-05 2.8E-09 64.5 4.1 31 244-274 29-59 (217)
103 2fna_A Conserved hypothetical 97.4 0.00015 5.1E-09 65.5 5.8 58 206-280 9-66 (357)
104 3tlx_A Adenylate kinase 2; str 97.4 8.8E-05 3E-09 64.9 3.8 32 244-275 29-60 (243)
105 2qen_A Walker-type ATPase; unk 97.4 0.00039 1.3E-08 62.6 8.1 57 205-278 7-63 (350)
106 2vhj_A Ntpase P4, P4; non- hyd 97.4 4.1E-05 1.4E-09 70.4 1.6 37 240-276 119-155 (331)
107 3nwj_A ATSK2; P loop, shikimat 97.4 0.00012 4.2E-09 64.7 4.5 32 245-276 49-80 (250)
108 2bbw_A Adenylate kinase 4, AK4 97.3 0.00015 5E-09 63.2 4.4 30 245-274 28-57 (246)
109 2cvh_A DNA repair and recombin 97.3 0.00029 1E-08 59.4 5.7 40 240-279 16-55 (220)
110 3uie_A Adenylyl-sulfate kinase 97.2 0.00027 9.3E-09 59.5 5.0 35 245-279 26-63 (200)
111 4e22_A Cytidylate kinase; P-lo 97.2 0.00025 8.6E-09 62.3 4.4 29 246-274 29-57 (252)
112 4b3f_X DNA-binding protein smu 97.2 0.00083 2.8E-08 66.9 8.3 56 208-278 184-242 (646)
113 1n0w_A DNA repair protein RAD5 97.1 0.00036 1.2E-08 59.8 4.6 40 240-279 20-68 (243)
114 1q3t_A Cytidylate kinase; nucl 97.1 0.00042 1.4E-08 59.9 4.8 32 244-275 16-47 (236)
115 2w0m_A SSO2452; RECA, SSPF, un 97.1 0.00053 1.8E-08 58.1 5.3 39 240-278 19-60 (235)
116 1uj2_A Uridine-cytidine kinase 97.0 0.00042 1.4E-08 60.6 4.3 37 245-281 23-67 (252)
117 4akg_A Glutathione S-transfera 97.0 0.00038 1.3E-08 79.2 4.7 43 244-286 645-687 (2695)
118 3a8t_A Adenylate isopentenyltr 97.0 0.00029 1E-08 65.0 2.9 33 246-278 42-74 (339)
119 2qt1_A Nicotinamide riboside k 97.0 0.00032 1.1E-08 59.2 2.7 30 247-276 24-54 (207)
120 4a74_A DNA repair and recombin 96.9 0.00078 2.7E-08 57.1 4.9 40 240-279 21-69 (231)
121 2z43_A DNA repair and recombin 96.9 0.00068 2.3E-08 61.8 4.7 41 240-280 103-152 (324)
122 2dr3_A UPF0273 protein PH0284; 96.9 0.0009 3.1E-08 57.3 5.1 40 240-279 19-61 (247)
123 2f6r_A COA synthase, bifunctio 96.9 0.00045 1.6E-08 61.8 3.1 29 246-275 77-105 (281)
124 1rz3_A Hypothetical protein rb 96.8 0.0022 7.4E-08 54.1 6.9 33 246-278 24-59 (201)
125 3hr8_A Protein RECA; alpha and 96.8 0.0011 3.6E-08 61.7 5.3 41 240-280 57-100 (356)
126 1v5w_A DMC1, meiotic recombina 96.8 0.0013 4.5E-08 60.4 5.4 41 240-280 118-167 (343)
127 3zvl_A Bifunctional polynucleo 96.8 0.00045 1.5E-08 65.3 2.3 30 245-274 259-288 (416)
128 1m7g_A Adenylylsulfate kinase; 96.8 0.001 3.4E-08 56.5 4.3 33 245-277 26-62 (211)
129 2zts_A Putative uncharacterize 96.7 0.0016 5.5E-08 55.8 5.3 40 240-279 26-69 (251)
130 1u94_A RECA protein, recombina 96.7 0.0016 5.4E-08 60.5 5.6 40 240-279 59-101 (356)
131 2ehv_A Hypothetical protein PH 96.7 0.00086 2.9E-08 57.6 3.5 39 240-278 26-68 (251)
132 3b9q_A Chloroplast SRP recepto 96.7 0.0012 4.2E-08 59.8 4.6 53 216-268 70-124 (302)
133 2qmh_A HPR kinase/phosphorylas 96.7 0.00082 2.8E-08 57.6 3.2 32 244-276 34-65 (205)
134 3c8u_A Fructokinase; YP_612366 96.7 0.0017 5.7E-08 55.0 5.1 23 247-269 25-47 (208)
135 2zr9_A Protein RECA, recombina 96.7 0.0015 5E-08 60.5 5.0 40 240-279 57-99 (349)
136 1htw_A HI0065; nucleotide-bind 96.7 0.0017 5.7E-08 53.2 4.8 23 246-268 35-57 (158)
137 2og2_A Putative signal recogni 96.7 0.0016 5.6E-08 60.5 5.2 52 217-268 128-181 (359)
138 1z6g_A Guanylate kinase; struc 96.7 0.00098 3.3E-08 57.2 3.4 23 246-268 25-47 (218)
139 3cmu_A Protein RECA, recombina 96.6 0.0015 5.3E-08 72.4 5.4 41 240-280 1423-1466(2050)
140 1cr0_A DNA primase/helicase; R 96.6 0.0023 7.8E-08 57.0 5.5 39 240-278 31-73 (296)
141 3jvv_A Twitching mobility prot 96.6 0.002 6.8E-08 59.8 5.1 23 247-269 126-148 (356)
142 1pzn_A RAD51, DNA repair and r 96.6 0.002 7E-08 59.4 5.0 41 240-280 127-176 (349)
143 1xp8_A RECA protein, recombina 96.5 0.0021 7.1E-08 59.9 5.0 40 240-279 70-112 (366)
144 1ny5_A Transcriptional regulat 96.5 0.0054 1.8E-07 57.3 7.8 61 210-281 137-200 (387)
145 1odf_A YGR205W, hypothetical 3 96.5 0.0031 1.1E-07 56.8 5.6 25 246-270 33-57 (290)
146 2yhs_A FTSY, cell division pro 96.5 0.002 6.8E-08 62.4 4.5 22 247-268 296-317 (503)
147 4eaq_A DTMP kinase, thymidylat 96.5 0.0026 8.9E-08 55.1 4.9 29 247-275 29-59 (229)
148 1znw_A Guanylate kinase, GMP k 96.5 0.0018 6E-08 54.8 3.7 23 247-269 23-45 (207)
149 1nlf_A Regulatory protein REPA 96.5 0.0014 4.9E-08 58.0 3.2 29 240-268 26-54 (279)
150 3vkg_A Dynein heavy chain, cyt 96.5 0.0037 1.3E-07 72.0 7.2 43 244-286 1304-1347(3245)
151 2v9p_A Replication protein E1; 96.4 0.002 6.9E-08 58.6 4.1 30 240-269 122-151 (305)
152 1x6v_B Bifunctional 3'-phospho 96.4 0.002 6.8E-08 64.2 4.4 32 246-277 54-88 (630)
153 2i1q_A DNA repair and recombin 96.4 0.002 6.9E-08 58.3 4.1 41 240-280 94-153 (322)
154 2jeo_A Uridine-cytidine kinase 96.4 0.0019 6.6E-08 56.1 3.6 25 247-271 28-52 (245)
155 3kl4_A SRP54, signal recogniti 96.4 0.0029 1E-07 60.2 5.1 35 244-278 97-134 (433)
156 3e1s_A Exodeoxyribonuclease V, 96.3 0.0045 1.5E-07 61.0 6.4 33 245-277 205-240 (574)
157 1vma_A Cell division protein F 96.3 0.0023 7.8E-08 58.2 3.9 59 218-277 79-140 (306)
158 3ney_A 55 kDa erythrocyte memb 96.3 0.0027 9.4E-08 54.0 4.1 25 245-269 20-44 (197)
159 3lda_A DNA repair protein RAD5 96.3 0.0032 1.1E-07 59.3 4.7 41 240-280 174-223 (400)
160 3tqc_A Pantothenate kinase; bi 96.3 0.0029 9.9E-08 57.9 4.2 33 247-279 95-132 (321)
161 3dm5_A SRP54, signal recogniti 96.3 0.0043 1.5E-07 59.2 5.5 63 216-279 73-138 (443)
162 3e70_C DPA, signal recognition 96.2 0.0054 1.9E-07 56.2 5.7 24 245-268 130-153 (328)
163 1p9r_A General secretion pathw 96.2 0.0063 2.2E-07 57.6 6.4 56 206-276 143-202 (418)
164 1zu4_A FTSY; GTPase, signal re 96.2 0.0055 1.9E-07 55.9 5.7 35 244-278 105-142 (320)
165 2gk6_A Regulator of nonsense t 96.2 0.0041 1.4E-07 61.7 5.1 32 246-277 197-232 (624)
166 3io5_A Recombination and repai 96.2 0.005 1.7E-07 56.5 5.2 40 240-280 25-69 (333)
167 2eyu_A Twitching motility prot 96.2 0.0037 1.3E-07 55.3 4.2 24 246-269 27-50 (261)
168 2axn_A 6-phosphofructo-2-kinas 96.1 0.0024 8.4E-08 62.1 3.1 34 245-278 36-72 (520)
169 3bh0_A DNAB-like replicative h 96.1 0.0065 2.2E-07 55.0 5.8 39 240-278 64-105 (315)
170 1s96_A Guanylate kinase, GMP k 96.0 0.0043 1.5E-07 53.5 3.8 26 244-269 16-41 (219)
171 3dzd_A Transcriptional regulat 96.0 0.018 6.2E-07 53.3 8.3 61 211-282 130-192 (368)
172 3lnc_A Guanylate kinase, GMP k 96.0 0.0023 7.9E-08 54.9 2.0 22 247-268 30-52 (231)
173 2ewv_A Twitching motility prot 95.9 0.0053 1.8E-07 57.1 4.4 26 244-269 136-161 (372)
174 2oap_1 GSPE-2, type II secreti 95.9 0.0051 1.7E-07 59.8 4.2 35 244-278 260-296 (511)
175 3kta_A Chromosome segregation 95.9 0.0047 1.6E-07 50.6 3.3 23 247-269 29-51 (182)
176 1sq5_A Pantothenate kinase; P- 95.9 0.0039 1.3E-07 56.3 2.9 23 247-269 83-105 (308)
177 2dpy_A FLII, flagellum-specifi 95.9 0.0091 3.1E-07 56.8 5.6 36 242-277 153-190 (438)
178 2r6a_A DNAB helicase, replicat 95.8 0.0098 3.4E-07 56.6 5.8 39 240-278 199-241 (454)
179 1m8p_A Sulfate adenylyltransfe 95.8 0.0053 1.8E-07 60.5 4.0 34 246-279 398-435 (573)
180 2wjy_A Regulator of nonsense t 95.8 0.0074 2.5E-07 61.7 5.1 23 246-268 373-395 (800)
181 2xxa_A Signal recognition part 95.8 0.0096 3.3E-07 56.6 5.5 36 244-279 100-139 (433)
182 2obl_A ESCN; ATPase, hydrolase 95.8 0.0091 3.1E-07 55.1 5.2 35 242-276 67-103 (347)
183 1rj9_A FTSY, signal recognitio 95.8 0.0064 2.2E-07 55.1 4.1 25 245-269 103-127 (304)
184 2ged_A SR-beta, signal recogni 95.8 0.0063 2.1E-07 49.9 3.7 25 244-268 48-72 (193)
185 3v9p_A DTMP kinase, thymidylat 95.7 0.0085 2.9E-07 52.0 4.5 32 247-278 28-66 (227)
186 2q6t_A DNAB replication FORK h 95.7 0.011 3.8E-07 56.0 5.8 39 240-278 196-238 (444)
187 2j37_W Signal recognition part 95.7 0.0085 2.9E-07 58.1 4.9 34 244-277 101-137 (504)
188 1p5z_B DCK, deoxycytidine kina 95.7 0.0027 9.3E-08 55.7 1.2 28 246-273 26-54 (263)
189 1z6t_A APAF-1, apoptotic prote 95.7 0.016 5.3E-07 56.5 6.8 63 206-279 120-189 (591)
190 1g8f_A Sulfate adenylyltransfe 95.7 0.007 2.4E-07 58.8 4.1 25 246-270 397-421 (511)
191 3vkg_A Dynein heavy chain, cyt 95.6 0.01 3.6E-07 68.4 5.8 40 244-283 604-643 (3245)
192 1bif_A 6-phosphofructo-2-kinas 95.6 0.0033 1.1E-07 60.2 1.5 27 245-271 40-66 (469)
193 3aez_A Pantothenate kinase; tr 95.6 0.008 2.7E-07 54.6 4.0 23 247-269 93-115 (312)
194 2v3c_C SRP54, signal recogniti 95.6 0.0068 2.3E-07 57.6 3.7 34 245-278 100-136 (432)
195 3b85_A Phosphate starvation-in 95.6 0.0059 2E-07 52.2 3.0 22 246-267 24-45 (208)
196 1j8m_F SRP54, signal recogniti 95.6 0.012 4.1E-07 53.1 5.1 34 245-278 99-135 (297)
197 1lw7_A Transcriptional regulat 95.6 0.0058 2E-07 56.4 3.0 27 245-271 171-197 (365)
198 2pcj_A ABC transporter, lipopr 95.6 0.0041 1.4E-07 53.7 1.9 25 247-271 33-57 (224)
199 2onk_A Molybdate/tungstate ABC 95.6 0.0053 1.8E-07 53.7 2.5 27 245-271 25-51 (240)
200 3tqf_A HPR(Ser) kinase; transf 95.6 0.0065 2.2E-07 50.9 2.9 24 244-267 16-39 (181)
201 1w36_D RECD, exodeoxyribonucle 95.5 0.011 3.6E-07 58.6 4.9 24 245-268 165-188 (608)
202 2qm8_A GTPase/ATPase; G protei 95.5 0.022 7.6E-07 52.1 6.7 22 247-268 58-79 (337)
203 3tif_A Uncharacterized ABC tra 95.5 0.005 1.7E-07 53.5 2.2 25 247-271 34-58 (235)
204 3fvq_A Fe(3+) IONS import ATP- 95.5 0.0054 1.8E-07 57.0 2.4 25 247-271 33-57 (359)
205 2cbz_A Multidrug resistance-as 95.5 0.0051 1.8E-07 53.5 2.1 24 246-269 33-56 (237)
206 4a1f_A DNAB helicase, replicat 95.5 0.017 5.7E-07 53.2 5.6 39 240-278 42-83 (338)
207 3bgw_A DNAB-like replicative h 95.4 0.014 4.9E-07 55.5 5.2 40 240-279 193-235 (444)
208 1b0u_A Histidine permease; ABC 95.4 0.0057 1.9E-07 54.1 2.2 25 247-271 35-59 (262)
209 3rlf_A Maltose/maltodextrin im 95.4 0.0067 2.3E-07 56.8 2.7 25 247-271 32-56 (381)
210 2xzl_A ATP-dependent helicase 95.4 0.011 3.7E-07 60.5 4.5 33 246-278 377-413 (802)
211 2it1_A 362AA long hypothetical 95.3 0.0072 2.4E-07 56.2 2.7 25 247-271 32-56 (362)
212 1oix_A RAS-related protein RAB 95.3 0.0086 2.9E-07 49.5 3.0 23 246-268 31-53 (191)
213 2px0_A Flagellar biosynthesis 95.3 0.0093 3.2E-07 53.7 3.4 36 244-279 105-144 (296)
214 1q57_A DNA primase/helicase; d 95.3 0.012 4E-07 56.7 4.3 40 240-279 238-281 (503)
215 1g6h_A High-affinity branched- 95.3 0.0058 2E-07 53.8 2.0 25 247-271 36-60 (257)
216 1sgw_A Putative ABC transporte 95.3 0.011 3.7E-07 50.8 3.6 25 247-271 38-62 (214)
217 2pze_A Cystic fibrosis transme 95.3 0.0067 2.3E-07 52.5 2.2 25 246-270 36-60 (229)
218 2ffh_A Protein (FFH); SRP54, s 95.3 0.027 9.1E-07 53.5 6.5 58 218-277 74-134 (425)
219 2yyz_A Sugar ABC transporter, 95.3 0.0075 2.6E-07 56.0 2.6 25 247-271 32-56 (359)
220 2qi9_C Vitamin B12 import ATP- 95.3 0.01 3.5E-07 52.1 3.4 29 247-276 29-57 (249)
221 1z47_A CYSA, putative ABC-tran 95.3 0.012 4.3E-07 54.4 4.1 25 247-271 44-68 (355)
222 1v43_A Sugar-binding transport 95.3 0.0077 2.6E-07 56.2 2.7 25 247-271 40-64 (372)
223 3gfo_A Cobalt import ATP-bindi 95.3 0.0067 2.3E-07 54.2 2.2 25 247-271 37-61 (275)
224 1mv5_A LMRA, multidrug resista 95.3 0.007 2.4E-07 52.8 2.3 23 247-269 31-53 (243)
225 1ji0_A ABC transporter; ATP bi 95.2 0.0066 2.2E-07 52.9 2.0 25 247-271 35-59 (240)
226 2ff7_A Alpha-hemolysin translo 95.2 0.007 2.4E-07 53.1 2.1 25 247-271 38-62 (247)
227 3p32_A Probable GTPase RV1496/ 95.2 0.017 5.9E-07 53.1 4.8 32 246-277 81-115 (355)
228 2d2e_A SUFC protein; ABC-ATPas 95.2 0.0091 3.1E-07 52.3 2.8 21 247-267 32-52 (250)
229 2olj_A Amino acid ABC transpor 95.2 0.008 2.7E-07 53.3 2.4 25 247-271 53-77 (263)
230 3cr8_A Sulfate adenylyltranfer 95.2 0.0068 2.3E-07 59.4 2.1 33 247-279 372-408 (552)
231 1g29_1 MALK, maltose transport 95.2 0.014 4.7E-07 54.5 4.1 25 247-271 32-56 (372)
232 3cmw_A Protein RECA, recombina 95.2 0.017 5.8E-07 63.4 5.3 42 240-281 728-772 (1706)
233 3cmu_A Protein RECA, recombina 95.1 0.016 5.6E-07 64.3 5.2 43 240-282 1077-1122(2050)
234 2ihy_A ABC transporter, ATP-bi 95.1 0.0073 2.5E-07 54.0 2.0 25 247-271 50-74 (279)
235 2zu0_C Probable ATP-dependent 95.1 0.011 3.6E-07 52.5 3.1 22 247-268 49-70 (267)
236 2ixe_A Antigen peptide transpo 95.1 0.0082 2.8E-07 53.4 2.3 25 247-271 48-72 (271)
237 2ghi_A Transport protein; mult 95.1 0.0079 2.7E-07 53.1 2.2 24 246-269 48-71 (260)
238 4g1u_C Hemin import ATP-bindin 95.1 0.0077 2.6E-07 53.4 2.1 24 247-270 40-63 (266)
239 1tf7_A KAIC; homohexamer, hexa 95.0 0.02 6.9E-07 55.4 5.1 39 241-279 36-78 (525)
240 2gza_A Type IV secretion syste 95.0 0.0082 2.8E-07 55.5 2.1 33 244-276 175-209 (361)
241 3d31_A Sulfate/molybdate ABC t 95.0 0.0065 2.2E-07 56.2 1.4 25 247-271 29-53 (348)
242 2nq2_C Hypothetical ABC transp 95.0 0.0088 3E-07 52.6 2.1 24 247-270 34-57 (253)
243 1vpl_A ABC transporter, ATP-bi 95.0 0.0098 3.3E-07 52.5 2.4 25 247-271 44-68 (256)
244 2yz2_A Putative ABC transporte 94.9 0.0096 3.3E-07 52.7 2.2 24 247-270 36-59 (266)
245 3gd7_A Fusion complex of cysti 94.9 0.0094 3.2E-07 55.9 2.2 23 247-269 50-72 (390)
246 2pjz_A Hypothetical protein ST 94.9 0.0096 3.3E-07 52.8 2.0 22 247-268 33-54 (263)
247 2pt7_A CAG-ALFA; ATPase, prote 94.9 0.0076 2.6E-07 55.1 1.4 35 244-278 171-207 (330)
248 2www_A Methylmalonic aciduria 94.9 0.054 1.8E-06 49.7 7.2 22 247-268 77-98 (349)
249 2fz4_A DNA repair protein RAD2 94.9 0.027 9.4E-07 48.6 4.9 33 246-278 110-142 (237)
250 3ice_A Transcription terminati 94.8 0.028 9.7E-07 52.9 5.2 23 246-268 176-198 (422)
251 1ls1_A Signal recognition part 94.8 0.049 1.7E-06 48.9 6.6 33 245-277 99-134 (295)
252 3lv8_A DTMP kinase, thymidylat 94.8 0.015 5.3E-07 50.7 3.1 30 247-276 30-63 (236)
253 1tf7_A KAIC; homohexamer, hexa 94.8 0.015 5.1E-07 56.4 3.3 39 240-278 277-318 (525)
254 1oxx_K GLCV, glucose, ABC tran 94.7 0.0066 2.3E-07 56.2 0.6 24 247-270 34-57 (353)
255 2bbs_A Cystic fibrosis transme 94.6 0.012 4.2E-07 52.9 2.0 23 247-269 67-89 (290)
256 1f2t_A RAD50 ABC-ATPase; DNA d 94.5 0.019 6.5E-07 46.2 2.9 22 247-268 26-47 (149)
257 2npi_A Protein CLP1; CLP1-PCF1 94.5 0.016 5.6E-07 55.5 2.8 22 247-268 141-162 (460)
258 2wsm_A Hydrogenase expression/ 94.5 0.023 7.7E-07 47.7 3.3 25 245-269 31-55 (221)
259 3ld9_A DTMP kinase, thymidylat 94.4 0.023 7.7E-07 49.2 3.3 28 247-274 24-55 (223)
260 1tq4_A IIGP1, interferon-induc 94.4 0.039 1.3E-06 52.1 5.1 22 247-268 72-93 (413)
261 2oil_A CATX-8, RAS-related pro 94.3 0.024 8.1E-07 46.4 3.1 23 245-267 26-48 (193)
262 3con_A GTPase NRAS; structural 94.3 0.025 8.5E-07 46.0 3.1 22 246-267 23-44 (190)
263 3sfz_A APAF-1, apoptotic pepti 94.3 0.055 1.9E-06 56.6 6.4 64 205-279 119-189 (1249)
264 2a9k_A RAS-related protein RAL 94.3 0.026 8.8E-07 45.4 3.1 23 245-267 19-41 (187)
265 3tui_C Methionine import ATP-b 94.2 0.02 6.9E-07 53.2 2.7 25 247-271 57-81 (366)
266 2gks_A Bifunctional SAT/APS ki 94.2 0.022 7.7E-07 55.7 3.1 32 246-277 374-408 (546)
267 1pui_A ENGB, probable GTP-bind 94.2 0.0088 3E-07 49.7 0.1 23 246-268 28-50 (210)
268 2vp4_A Deoxynucleoside kinase; 94.2 0.024 8.1E-07 48.6 2.8 28 247-275 23-50 (230)
269 2hf9_A Probable hydrogenase ni 94.1 0.041 1.4E-06 46.3 4.2 24 245-268 39-62 (226)
270 1u0l_A Probable GTPase ENGC; p 94.1 0.019 6.6E-07 51.5 2.3 26 246-271 171-196 (301)
271 2atv_A RERG, RAS-like estrogen 94.1 0.032 1.1E-06 45.8 3.5 23 245-267 29-51 (196)
272 1svi_A GTP-binding protein YSX 94.1 0.022 7.5E-07 46.5 2.4 23 245-267 24-46 (195)
273 2gf9_A RAS-related protein RAB 94.1 0.029 1E-06 45.7 3.1 24 245-268 23-46 (189)
274 3kkq_A RAS-related protein M-R 94.0 0.03 1E-06 45.1 3.1 24 244-267 18-41 (183)
275 1qhl_A Protein (cell division 94.0 0.0099 3.4E-07 51.6 0.1 22 248-269 31-52 (227)
276 2p67_A LAO/AO transport system 94.0 0.047 1.6E-06 49.9 4.6 30 246-275 58-90 (341)
277 1m2o_B GTP-binding protein SAR 94.0 0.028 9.7E-07 46.2 2.9 21 246-266 25-45 (190)
278 3tkl_A RAS-related protein RAB 94.0 0.031 1.1E-06 45.5 3.1 25 244-268 16-40 (196)
279 3nh6_A ATP-binding cassette SU 94.0 0.014 4.7E-07 53.0 1.0 26 246-271 82-107 (306)
280 2a5y_B CED-4; apoptosis; HET: 93.9 0.079 2.7E-06 51.4 6.4 43 214-266 132-174 (549)
281 2rcn_A Probable GTPase ENGC; Y 93.9 0.023 7.9E-07 52.7 2.4 24 246-269 217-240 (358)
282 3c5c_A RAS-like protein 12; GD 93.9 0.034 1.2E-06 45.5 3.2 22 246-267 23-44 (187)
283 3ihw_A Centg3; RAS, centaurin, 93.9 0.035 1.2E-06 45.5 3.2 22 246-267 22-43 (184)
284 3pqc_A Probable GTP-binding pr 93.9 0.025 8.7E-07 45.9 2.4 23 245-267 24-46 (195)
285 1f6b_A SAR1; gtpases, N-termin 93.9 0.04 1.4E-06 45.7 3.6 21 246-266 27-47 (198)
286 2fg5_A RAB-22B, RAS-related pr 93.8 0.032 1.1E-06 45.8 3.0 22 246-267 25-46 (192)
287 3dz8_A RAS-related protein RAB 93.8 0.033 1.1E-06 45.5 3.1 23 246-268 25-47 (191)
288 1ko7_A HPR kinase/phosphatase; 93.8 0.04 1.4E-06 50.2 3.8 27 244-271 144-170 (314)
289 1z06_A RAS-related protein RAB 93.8 0.036 1.2E-06 45.2 3.2 23 245-267 21-43 (189)
290 1zd9_A ADP-ribosylation factor 93.8 0.036 1.2E-06 45.3 3.1 22 246-267 24-45 (188)
291 2a5j_A RAS-related protein RAB 93.8 0.036 1.2E-06 45.3 3.1 22 246-267 23-44 (191)
292 2p5s_A RAS and EF-hand domain 93.8 0.038 1.3E-06 45.6 3.3 23 245-267 29-51 (199)
293 3reg_A RHO-like small GTPase; 93.7 0.037 1.3E-06 45.3 3.1 22 246-267 25-46 (194)
294 3cph_A RAS-related protein SEC 93.7 0.037 1.3E-06 45.8 3.1 23 245-267 21-43 (213)
295 2qag_B Septin-6, protein NEDD5 93.7 0.036 1.2E-06 52.6 3.3 21 247-267 45-65 (427)
296 3lxx_A GTPase IMAP family memb 93.6 0.035 1.2E-06 47.6 2.9 24 245-268 30-53 (239)
297 3oes_A GTPase rhebl1; small GT 93.6 0.036 1.2E-06 45.8 2.9 23 245-267 25-47 (201)
298 1ksh_A ARF-like protein 2; sma 93.6 0.03 1E-06 45.4 2.3 24 244-267 18-41 (186)
299 3euj_A Chromosome partition pr 93.5 0.052 1.8E-06 52.3 4.2 25 245-269 30-54 (483)
300 4ag6_A VIRB4 ATPase, type IV s 93.5 0.093 3.2E-06 48.5 5.8 35 244-278 35-72 (392)
301 1knx_A Probable HPR(Ser) kinas 93.5 0.047 1.6E-06 49.6 3.7 29 244-273 147-175 (312)
302 1gwn_A RHO-related GTP-binding 93.5 0.039 1.3E-06 46.2 2.9 22 246-267 30-51 (205)
303 2yv5_A YJEQ protein; hydrolase 93.4 0.039 1.3E-06 49.6 3.0 23 246-269 167-189 (302)
304 3qks_A DNA double-strand break 93.4 0.045 1.5E-06 46.2 3.2 24 247-270 26-49 (203)
305 1moz_A ARL1, ADP-ribosylation 93.4 0.047 1.6E-06 43.9 3.1 23 244-266 18-40 (183)
306 1t6n_A Probable ATP-dependent 93.4 0.069 2.3E-06 44.8 4.3 62 204-268 11-75 (220)
307 1hv8_A Putative ATP-dependent 93.4 0.25 8.6E-06 44.0 8.3 59 207-268 6-68 (367)
308 1yqt_A RNAse L inhibitor; ATP- 93.4 0.04 1.4E-06 53.7 3.1 24 246-269 49-72 (538)
309 2ew1_A RAS-related protein RAB 93.3 0.044 1.5E-06 45.8 2.9 23 245-267 27-49 (201)
310 1fzq_A ADP-ribosylation factor 93.3 0.04 1.4E-06 44.8 2.6 24 244-267 16-39 (181)
311 1zj6_A ADP-ribosylation factor 93.2 0.04 1.4E-06 44.8 2.6 23 244-266 16-38 (187)
312 2atx_A Small GTP binding prote 93.2 0.047 1.6E-06 44.6 3.0 23 245-267 19-41 (194)
313 3f8t_A Predicted ATPase involv 93.2 0.049 1.7E-06 52.5 3.4 27 246-273 241-268 (506)
314 2b6h_A ADP-ribosylation factor 93.1 0.053 1.8E-06 44.6 3.1 21 246-266 31-51 (192)
315 1sky_E F1-ATPase, F1-ATP synth 93.1 0.05 1.7E-06 52.2 3.3 23 246-268 153-175 (473)
316 2fv8_A H6, RHO-related GTP-bin 93.1 0.049 1.7E-06 45.2 3.0 23 245-267 26-48 (207)
317 2q3h_A RAS homolog gene family 93.1 0.044 1.5E-06 45.0 2.6 22 246-267 22-43 (201)
318 2qtf_A Protein HFLX, GTP-bindi 93.1 0.074 2.5E-06 49.2 4.4 22 247-268 182-203 (364)
319 1qde_A EIF4A, translation init 93.1 0.071 2.4E-06 44.7 4.0 60 207-268 14-76 (224)
320 2f7s_A C25KG, RAS-related prot 93.1 0.045 1.5E-06 45.6 2.7 22 246-267 27-48 (217)
321 2gxq_A Heat resistant RNA depe 93.1 0.038 1.3E-06 45.7 2.2 24 245-268 39-63 (207)
322 2o52_A RAS-related protein RAB 93.1 0.041 1.4E-06 45.5 2.4 23 245-267 26-48 (200)
323 2h17_A ADP-ribosylation factor 93.0 0.038 1.3E-06 44.7 2.1 22 246-267 23-44 (181)
324 3l0o_A Transcription terminati 93.0 0.11 3.7E-06 48.9 5.3 27 242-268 171-199 (427)
325 2gco_A H9, RHO-related GTP-bin 93.0 0.053 1.8E-06 44.8 2.9 22 246-267 27-48 (201)
326 2hup_A RAS-related protein RAB 92.9 0.054 1.8E-06 44.9 3.0 22 246-267 31-52 (201)
327 2qnr_A Septin-2, protein NEDD5 92.8 0.037 1.3E-06 49.7 1.9 22 246-267 20-41 (301)
328 3b5x_A Lipid A export ATP-bind 92.8 0.05 1.7E-06 53.3 3.0 23 247-269 372-394 (582)
329 4bas_A ADP-ribosylation factor 92.8 0.058 2E-06 44.0 2.9 24 244-267 17-40 (199)
330 2j1l_A RHO-related GTP-binding 92.8 0.048 1.6E-06 45.7 2.4 21 246-266 36-56 (214)
331 3cbq_A GTP-binding protein REM 92.8 0.046 1.6E-06 45.2 2.3 21 246-266 25-45 (195)
332 2qu8_A Putative nucleolar GTP- 92.8 0.046 1.6E-06 46.3 2.3 23 245-267 30-52 (228)
333 2il1_A RAB12; G-protein, GDP, 92.7 0.059 2E-06 44.2 2.8 22 246-267 28-49 (192)
334 4gzl_A RAS-related C3 botulinu 92.6 0.063 2.2E-06 44.6 2.9 23 245-267 31-53 (204)
335 3b6e_A Interferon-induced heli 92.5 0.061 2.1E-06 44.5 2.7 24 245-268 49-72 (216)
336 3q3j_B RHO-related GTP-binding 92.5 0.071 2.4E-06 44.7 3.1 22 246-267 29-50 (214)
337 1g5t_A COB(I)alamin adenosyltr 92.5 0.13 4.4E-06 43.6 4.7 34 245-278 28-65 (196)
338 3b60_A Lipid A export ATP-bind 92.5 0.05 1.7E-06 53.4 2.4 25 247-271 372-396 (582)
339 2h57_A ADP-ribosylation factor 92.4 0.051 1.8E-06 44.3 2.1 23 246-268 23-45 (190)
340 2qag_C Septin-7; cell cycle, c 92.4 0.052 1.8E-06 51.3 2.3 22 247-268 34-55 (418)
341 2e87_A Hypothetical protein PH 92.3 0.12 4.2E-06 47.3 4.8 23 245-267 168-190 (357)
342 3llu_A RAS-related GTP-binding 92.3 0.061 2.1E-06 44.3 2.4 23 245-267 21-43 (196)
343 3geh_A MNME, tRNA modification 92.3 0.16 5.4E-06 48.6 5.6 21 247-267 227-247 (462)
344 3szr_A Interferon-induced GTP- 92.3 0.11 3.8E-06 51.3 4.6 22 247-268 48-69 (608)
345 1vt4_I APAF-1 related killer D 92.2 0.21 7.2E-06 52.7 6.7 56 213-280 131-192 (1221)
346 3qf7_A RAD50; ABC-ATPase, ATPa 92.1 0.083 2.8E-06 48.8 3.4 22 247-268 26-47 (365)
347 2yc2_C IFT27, small RAB-relate 92.1 0.033 1.1E-06 45.8 0.5 23 245-267 21-43 (208)
348 3qf4_B Uncharacterized ABC tra 92.1 0.058 2E-06 53.1 2.4 27 245-271 382-408 (598)
349 3lxw_A GTPase IMAP family memb 92.1 0.074 2.5E-06 46.1 2.8 23 245-267 22-44 (247)
350 3ug7_A Arsenical pump-driving 92.1 0.25 8.5E-06 45.2 6.5 37 242-278 24-63 (349)
351 1yqt_A RNAse L inhibitor; ATP- 92.0 0.067 2.3E-06 52.1 2.7 23 247-269 315-337 (538)
352 2xtp_A GTPase IMAP family memb 92.0 0.073 2.5E-06 46.0 2.7 24 245-268 23-46 (260)
353 2yl4_A ATP-binding cassette SU 92.0 0.051 1.8E-06 53.4 1.9 25 247-271 373-397 (595)
354 3ozx_A RNAse L inhibitor; ATP 92.0 0.057 2E-06 52.6 2.2 23 247-269 297-319 (538)
355 3ozx_A RNAse L inhibitor; ATP 92.0 0.059 2E-06 52.6 2.2 23 247-269 28-50 (538)
356 1w1w_A Structural maintenance 91.9 0.092 3.1E-06 49.3 3.5 25 246-270 28-52 (430)
357 3llm_A ATP-dependent RNA helic 91.9 0.097 3.3E-06 44.7 3.3 21 245-265 77-97 (235)
358 2x77_A ADP-ribosylation factor 91.9 0.054 1.9E-06 44.0 1.6 21 245-265 23-43 (189)
359 1t9h_A YLOQ, probable GTPase E 91.8 0.02 7E-07 51.9 -1.2 25 246-270 175-199 (307)
360 3qkt_A DNA double-strand break 91.8 0.081 2.8E-06 48.1 2.9 22 247-268 26-47 (339)
361 3vr4_A V-type sodium ATPase ca 91.8 0.16 5.4E-06 49.9 5.0 34 242-275 228-263 (600)
362 2qe7_A ATP synthase subunit al 91.8 0.13 4.5E-06 49.6 4.4 33 242-274 158-193 (502)
363 1vec_A ATP-dependent RNA helic 91.8 0.27 9.3E-06 40.4 5.9 18 245-262 41-58 (206)
364 1h65_A Chloroplast outer envel 91.7 0.22 7.5E-06 43.5 5.5 23 245-267 40-62 (270)
365 2pl3_A Probable ATP-dependent 91.7 0.068 2.3E-06 45.4 2.1 54 206-262 24-80 (236)
366 3j16_B RLI1P; ribosome recycli 91.6 0.079 2.7E-06 52.5 2.7 23 247-269 106-128 (608)
367 3bk7_A ABC transporter ATP-bin 91.6 0.076 2.6E-06 52.6 2.5 23 247-269 385-407 (607)
368 1e9r_A Conjugal transfer prote 91.6 0.16 5.5E-06 47.5 4.7 34 244-277 53-89 (437)
369 2g3y_A GTP-binding protein GEM 91.5 0.1 3.6E-06 44.2 3.0 21 246-266 39-59 (211)
370 3bk7_A ABC transporter ATP-bin 91.5 0.082 2.8E-06 52.3 2.6 23 247-269 120-142 (607)
371 4a82_A Cystic fibrosis transme 91.3 0.048 1.7E-06 53.4 0.8 25 247-271 370-394 (578)
372 3vkw_A Replicase large subunit 91.3 0.092 3.2E-06 50.0 2.7 23 245-267 162-184 (446)
373 3j16_B RLI1P; ribosome recycli 91.3 0.1 3.4E-06 51.7 3.0 23 247-269 381-403 (608)
374 2o5v_A DNA replication and rep 91.2 0.11 3.7E-06 48.1 3.0 25 243-267 24-49 (359)
375 3bor_A Human initiation factor 91.2 0.058 2E-06 46.1 1.1 54 206-262 29-85 (237)
376 2aka_B Dynamin-1; fusion prote 91.2 0.17 5.7E-06 44.4 4.1 22 246-267 28-49 (299)
377 3lfu_A DNA helicase II; SF1 he 91.2 0.12 4.2E-06 50.6 3.6 35 244-278 22-63 (647)
378 2xau_A PRE-mRNA-splicing facto 91.2 0.24 8.4E-06 50.3 5.8 60 207-268 72-133 (773)
379 1mky_A Probable GTP-binding pr 91.1 0.1 3.5E-06 49.2 2.8 23 246-268 182-204 (439)
380 3gqb_A V-type ATP synthase alp 91.0 0.17 5.7E-06 49.5 4.2 34 242-275 217-252 (578)
381 1w4r_A Thymidine kinase; type 91.0 0.23 7.8E-06 42.0 4.6 32 246-277 22-56 (195)
382 3gee_A MNME, tRNA modification 91.0 0.12 4.2E-06 49.5 3.3 21 247-267 236-256 (476)
383 2r9v_A ATP synthase subunit al 91.0 0.12 4.1E-06 50.0 3.2 33 242-274 171-206 (515)
384 3pey_A ATP-dependent RNA helic 91.0 0.2 6.8E-06 45.1 4.6 58 207-264 5-64 (395)
385 1e69_A Chromosome segregation 91.0 0.11 3.7E-06 46.9 2.7 23 247-269 27-49 (322)
386 4aby_A DNA repair protein RECN 90.9 0.043 1.5E-06 50.9 -0.0 28 242-269 57-85 (415)
387 1puj_A YLQF, conserved hypothe 90.8 0.31 1E-05 43.3 5.5 23 246-268 122-144 (282)
388 3qf4_A ABC transporter, ATP-bi 90.7 0.069 2.4E-06 52.5 1.2 26 246-271 371-396 (587)
389 3mfy_A V-type ATP synthase alp 90.5 0.13 4.3E-06 50.5 2.8 34 242-275 223-258 (588)
390 3th5_A RAS-related C3 botulinu 89.9 0.049 1.7E-06 45.0 0.0 21 246-266 32-52 (204)
391 1fx0_A ATP synthase alpha chai 90.4 0.13 4.4E-06 49.8 2.8 32 242-273 159-193 (507)
392 1ni3_A YCHF GTPase, YCHF GTP-b 90.4 0.14 4.6E-06 48.0 2.9 20 247-266 23-42 (392)
393 1xti_A Probable ATP-dependent 90.3 0.22 7.5E-06 45.0 4.2 58 207-266 8-67 (391)
394 3bfv_A CAPA1, CAPB2, membrane 90.3 0.35 1.2E-05 42.6 5.3 35 244-278 82-120 (271)
395 3def_A T7I23.11 protein; chlor 90.2 0.38 1.3E-05 41.7 5.5 24 245-268 37-60 (262)
396 2va8_A SSO2462, SKI2-type heli 90.1 0.15 5.2E-06 50.8 3.2 56 206-262 7-64 (715)
397 1s2m_A Putative ATP-dependent 90.1 0.51 1.7E-05 42.8 6.5 59 205-265 19-79 (400)
398 4dhe_A Probable GTP-binding pr 90.0 0.058 2E-06 45.0 0.0 23 245-267 30-52 (223)
399 3cio_A ETK, tyrosine-protein k 90.0 0.52 1.8E-05 42.1 6.3 36 244-279 104-143 (299)
400 2iw3_A Elongation factor 3A; a 89.9 0.15 5.3E-06 53.1 3.1 20 247-266 464-483 (986)
401 3k9g_A PF-32 protein; ssgcid, 89.8 0.32 1.1E-05 42.1 4.7 34 245-278 28-64 (267)
402 2c61_A A-type ATP synthase non 89.8 0.23 7.7E-06 47.6 3.9 29 242-270 148-178 (469)
403 3cnl_A YLQF, putative uncharac 89.8 0.15 5.3E-06 44.8 2.6 23 246-268 101-123 (262)
404 3end_A Light-independent proto 89.7 0.35 1.2E-05 42.8 4.9 34 245-278 42-78 (307)
405 3h1t_A Type I site-specific re 89.7 0.42 1.4E-05 46.4 5.9 24 245-268 199-222 (590)
406 2z0m_A 337AA long hypothetical 89.5 0.34 1.2E-05 42.6 4.7 33 245-277 32-64 (337)
407 2qag_A Septin-2, protein NEDD5 89.5 0.13 4.5E-06 47.3 2.0 22 246-267 39-60 (361)
408 2wkq_A NPH1-1, RAS-related C3 89.4 0.5 1.7E-05 41.7 5.7 22 246-267 157-178 (332)
409 2oxc_A Probable ATP-dependent 89.2 0.22 7.4E-06 42.2 3.1 60 205-267 22-85 (230)
410 1q0u_A Bstdead; DEAD protein, 89.1 0.78 2.7E-05 38.2 6.5 18 245-262 42-59 (219)
411 1jwy_B Dynamin A GTPase domain 89.1 0.18 6.2E-06 44.7 2.6 23 246-268 26-48 (315)
412 3auy_A DNA double-strand break 89.0 0.18 6.3E-06 46.3 2.6 23 244-266 24-47 (371)
413 1udx_A The GTP-binding protein 88.9 0.11 3.8E-06 49.0 1.1 21 247-267 160-180 (416)
414 3oaa_A ATP synthase subunit al 88.9 0.23 7.9E-06 47.9 3.3 32 242-273 158-192 (513)
415 3ber_A Probable ATP-dependent 88.9 0.17 5.7E-06 43.7 2.1 54 207-262 43-98 (249)
416 3t34_A Dynamin-related protein 88.9 0.19 6.5E-06 45.9 2.6 22 246-267 36-57 (360)
417 2fwr_A DNA repair protein RAD2 88.8 0.45 1.5E-05 44.6 5.3 33 246-278 110-142 (472)
418 2ck3_A ATP synthase subunit al 88.8 0.22 7.5E-06 48.2 3.1 28 242-269 158-188 (510)
419 3iqw_A Tail-anchored protein t 88.7 0.49 1.7E-05 43.1 5.3 35 244-278 16-53 (334)
420 1wb9_A DNA mismatch repair pro 88.7 0.26 8.9E-06 50.3 3.7 23 245-267 608-630 (800)
421 1rif_A DAR protein, DNA helica 88.7 0.5 1.7E-05 41.2 5.1 31 246-276 130-164 (282)
422 1ewq_A DNA mismatch repair pro 88.6 0.22 7.7E-06 50.5 3.1 24 245-268 577-600 (765)
423 3la6_A Tyrosine-protein kinase 88.3 0.52 1.8E-05 41.9 5.1 36 244-279 92-131 (286)
424 3vr4_D V-type sodium ATPase su 88.1 0.35 1.2E-05 46.2 3.9 29 242-270 147-177 (465)
425 3l0i_B RAS-related protein RAB 88.0 0.063 2.2E-06 44.2 -1.1 21 246-266 35-55 (199)
426 2ohf_A Protein OLA1, GTP-bindi 87.9 0.44 1.5E-05 44.6 4.5 22 246-267 24-45 (396)
427 3fht_A ATP-dependent RNA helic 87.9 1 3.5E-05 40.8 6.9 56 206-261 24-81 (412)
428 2woo_A ATPase GET3; tail-ancho 87.9 0.63 2.1E-05 42.1 5.4 34 245-278 20-56 (329)
429 2zj8_A DNA helicase, putative 87.8 0.22 7.4E-06 49.8 2.4 68 208-276 2-75 (720)
430 1ytm_A Phosphoenolpyruvate car 87.6 0.25 8.6E-06 48.0 2.6 47 217-263 203-254 (532)
431 2olr_A Phosphoenolpyruvate car 87.4 0.25 8.5E-06 48.0 2.5 46 217-263 210-260 (540)
432 3gqb_B V-type ATP synthase bet 87.3 0.35 1.2E-05 46.2 3.4 29 242-270 143-173 (464)
433 1fx0_B ATP synthase beta chain 87.3 0.54 1.8E-05 45.3 4.7 27 242-268 161-189 (498)
434 4f4c_A Multidrug resistance pr 87.2 0.22 7.5E-06 53.6 2.2 27 245-271 445-471 (1321)
435 2j0s_A ATP-dependent RNA helic 87.1 0.5 1.7E-05 43.1 4.3 56 207-264 37-94 (410)
436 2ck3_D ATP synthase subunit be 87.0 0.51 1.8E-05 45.3 4.4 22 247-268 156-177 (482)
437 3ly5_A ATP-dependent RNA helic 86.9 0.69 2.4E-05 40.1 4.9 18 245-262 92-109 (262)
438 1wrb_A DJVLGB; RNA helicase, D 86.9 0.75 2.6E-05 39.2 5.1 18 245-262 61-78 (253)
439 2j9r_A Thymidine kinase; TK1, 86.9 0.79 2.7E-05 39.2 5.1 31 247-277 31-64 (214)
440 1j3b_A ATP-dependent phosphoen 86.8 0.23 7.8E-06 48.3 1.8 46 217-263 194-244 (529)
441 2iw3_A Elongation factor 3A; a 86.8 0.14 4.8E-06 53.4 0.4 24 247-270 702-725 (986)
442 3thx_B DNA mismatch repair pro 86.8 0.26 8.9E-06 51.1 2.4 22 245-266 674-695 (918)
443 2x2e_A Dynamin-1; nitration, h 86.8 0.25 8.5E-06 45.1 2.0 22 246-267 33-54 (353)
444 3dpu_A RAB family protein; roc 86.8 0.48 1.6E-05 45.7 4.1 22 246-267 43-64 (535)
445 3thx_A DNA mismatch repair pro 86.7 0.33 1.1E-05 50.4 3.1 21 245-265 663-683 (934)
446 2ius_A DNA translocase FTSK; n 86.6 0.56 1.9E-05 45.4 4.5 35 245-279 168-209 (512)
447 1ii2_A Phosphoenolpyruvate car 86.5 0.31 1E-05 47.3 2.5 45 217-262 182-231 (524)
448 3g5u_A MCG1178, multidrug resi 86.2 0.24 8.3E-06 53.1 1.8 26 246-271 418-443 (1284)
449 2oze_A ORF delta'; para, walke 86.1 0.74 2.5E-05 40.4 4.7 35 245-279 35-75 (298)
450 3fkq_A NTRC-like two-domain pr 86.1 0.84 2.9E-05 41.9 5.2 34 245-278 144-181 (373)
451 3fe2_A Probable ATP-dependent 86.0 1.5 5E-05 37.2 6.4 17 245-261 67-83 (242)
452 1zcb_A G alpha I/13; GTP-bindi 86.0 0.38 1.3E-05 44.4 2.8 23 245-267 34-56 (362)
453 3ec1_A YQEH GTPase; atnos1, at 85.9 0.89 3E-05 41.8 5.3 23 245-267 163-185 (369)
454 2ph1_A Nucleotide-binding prot 85.9 1.3 4.5E-05 38.2 6.1 35 245-279 19-57 (262)
455 3bs4_A Uncharacterized protein 85.7 0.78 2.7E-05 40.4 4.6 40 240-279 17-59 (260)
456 3eiq_A Eukaryotic initiation f 85.6 1.1 3.6E-05 40.8 5.6 57 207-267 40-101 (414)
457 3io3_A DEHA2D07832P; chaperone 85.3 0.9 3.1E-05 41.6 5.0 35 244-278 18-57 (348)
458 3fmo_B ATP-dependent RNA helic 85.1 1.3 4.4E-05 39.3 5.9 61 206-268 91-156 (300)
459 3o47_A ADP-ribosylation factor 85.1 0.35 1.2E-05 43.8 2.1 21 246-266 167-187 (329)
460 3fmp_B ATP-dependent RNA helic 85.0 1.9 6.4E-05 40.4 7.2 61 206-268 91-156 (479)
461 1ihu_A Arsenical pump-driving 84.9 1.2 3.9E-05 43.5 5.9 32 247-278 330-364 (589)
462 3ux8_A Excinuclease ABC, A sub 84.8 0.29 9.8E-06 48.7 1.5 19 247-265 351-369 (670)
463 1xzp_A Probable tRNA modificat 84.6 0.35 1.2E-05 46.4 1.9 22 246-267 245-266 (482)
464 2i4i_A ATP-dependent RNA helic 84.5 0.5 1.7E-05 43.1 2.9 50 207-260 15-68 (417)
465 4dcu_A GTP-binding protein ENG 84.3 0.48 1.6E-05 44.8 2.7 22 246-267 25-46 (456)
466 1wp9_A ATP-dependent RNA helic 84.1 0.97 3.3E-05 41.3 4.7 32 246-277 25-60 (494)
467 1fuu_A Yeast initiation factor 84.0 0.28 9.7E-06 44.2 1.0 53 206-261 20-75 (394)
468 3c5h_A Glucocorticoid receptor 83.9 0.5 1.7E-05 40.8 2.5 21 246-266 21-50 (255)
469 1of1_A Thymidine kinase; trans 83.8 0.45 1.6E-05 44.2 2.3 25 247-271 52-76 (376)
470 2o8b_B DNA mismatch repair pro 83.1 0.67 2.3E-05 48.6 3.4 21 245-265 790-810 (1022)
471 2hjg_A GTP-binding protein ENG 83.0 0.54 1.8E-05 44.1 2.5 24 245-268 176-199 (436)
472 4f4c_A Multidrug resistance pr 83.0 0.35 1.2E-05 52.1 1.3 36 245-280 1106-1143(1321)
473 3g5u_A MCG1178, multidrug resi 83.0 0.83 2.9E-05 49.0 4.2 25 247-271 1062-1086(1284)
474 3h2y_A GTPase family protein; 82.9 1.2 4.2E-05 40.9 4.8 24 245-268 161-184 (368)
475 2oca_A DAR protein, ATP-depend 82.9 0.78 2.7E-05 43.4 3.6 33 245-277 129-165 (510)
476 3ez2_A Plasmid partition prote 82.7 1.1 3.7E-05 41.4 4.4 32 247-278 111-152 (398)
477 1jr3_D DNA polymerase III, del 81.7 0.48 1.6E-05 42.6 1.5 26 243-268 17-42 (343)
478 3lvq_E ARF-GAP with SH3 domain 81.4 0.82 2.8E-05 43.4 3.1 22 246-267 324-345 (497)
479 3iuy_A Probable ATP-dependent 81.3 0.99 3.4E-05 37.7 3.3 18 245-262 58-75 (228)
480 3ux8_A Excinuclease ABC, A sub 80.8 0.66 2.3E-05 46.1 2.3 15 247-261 47-61 (670)
481 2j69_A Bacterial dynamin-like 80.3 2.3 7.8E-05 42.6 6.0 22 246-267 71-92 (695)
482 1lnz_A SPO0B-associated GTP-bi 79.3 0.78 2.7E-05 41.9 2.1 22 246-267 160-181 (342)
483 1c4o_A DNA nucleotide excision 79.2 4.5 0.00016 40.1 7.8 33 246-278 30-62 (664)
484 2woj_A ATPase GET3; tail-ancho 79.1 1.5 5.3E-05 40.0 4.0 35 245-279 19-58 (354)
485 3dkp_A Probable ATP-dependent 78.9 1.3 4.3E-05 37.5 3.2 17 245-261 67-83 (245)
486 2qpt_A EH domain-containing pr 78.8 0.89 3E-05 44.3 2.4 22 246-267 67-88 (550)
487 3tbk_A RIG-I helicase domain; 78.7 2.1 7.3E-05 40.2 5.0 24 245-268 20-43 (555)
488 1f5n_A Interferon-induced guan 78.6 0.75 2.6E-05 45.3 1.9 22 246-267 40-61 (592)
489 4ad8_A DNA repair protein RECN 78.5 0.39 1.3E-05 46.2 -0.2 30 241-270 56-86 (517)
490 3fwy_A Light-independent proto 78.0 2.5 8.5E-05 38.0 5.0 36 243-278 47-85 (314)
491 1gm5_A RECG; helicase, replica 78.0 2.4 8.2E-05 43.1 5.4 33 245-277 390-425 (780)
492 3ez9_A Para; DNA binding, wing 77.4 1.3 4.5E-05 40.9 3.1 32 247-278 114-155 (403)
493 1goj_A Kinesin, kinesin heavy 76.9 2.4 8.2E-05 39.0 4.6 49 208-261 50-98 (355)
494 4a2p_A RIG-I, retinoic acid in 76.8 2.5 8.6E-05 39.9 4.9 24 245-268 23-46 (556)
495 1bg2_A Kinesin; motor protein, 76.3 2 6.9E-05 38.9 3.9 49 208-261 47-95 (325)
496 2vl7_A XPD; helicase, unknown 75.8 6 0.00021 38.0 7.4 34 245-278 27-60 (540)
497 4gl2_A Interferon-induced heli 75.7 2.4 8.1E-05 41.7 4.6 23 245-267 23-45 (699)
498 1x88_A Kinesin-like protein KI 75.0 2.4 8E-05 39.1 4.1 49 208-261 58-106 (359)
499 3dc4_A Kinesin-like protein NO 75.0 2.8 9.5E-05 38.4 4.5 49 208-261 64-112 (344)
500 3oiy_A Reverse gyrase helicase 74.9 2.6 8.9E-05 38.5 4.4 22 245-266 37-58 (414)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.77 E-value=4.4e-19 Score=168.09 Aligned_cols=82 Identities=21% Similarity=0.321 Sum_probs=77.7
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVY 281 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~ 281 (288)
...+..+|+||+|.+++|++|.+.+..++.+++.|+++|+++++|+|||||||||||++|+|+|++++.+|+.++++++.
T Consensus 140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 219 (405)
T 4b4t_J 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELV 219 (405)
T ss_dssp ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGS
T ss_pred cCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhh
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred Cc
Q 045456 282 CN 283 (288)
Q Consensus 282 ~~ 283 (288)
++
T Consensus 220 sk 221 (405)
T 4b4t_J 220 QK 221 (405)
T ss_dssp CS
T ss_pred cc
Confidence 75
No 2
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.77 E-value=4e-19 Score=170.18 Aligned_cols=83 Identities=19% Similarity=0.302 Sum_probs=78.6
Q ss_pred cCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCC
Q 045456 201 TNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSV 280 (288)
Q Consensus 201 ~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~ 280 (288)
+...++.+|+||+|.+++|++|.+.+..|+.+++.|+++|+++++|+|||||||||||++|+|+|++++.+|+.++++++
T Consensus 172 ~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l 251 (434)
T 4b4t_M 172 VDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQL 251 (434)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred cCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhh
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCc
Q 045456 281 YCN 283 (288)
Q Consensus 281 ~~~ 283 (288)
.++
T Consensus 252 ~~~ 254 (434)
T 4b4t_M 252 VQM 254 (434)
T ss_dssp CSS
T ss_pred hhc
Confidence 775
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.77 E-value=5.7e-19 Score=168.11 Aligned_cols=83 Identities=20% Similarity=0.298 Sum_probs=78.5
Q ss_pred cCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCC
Q 045456 201 TNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSV 280 (288)
Q Consensus 201 ~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~ 280 (288)
+...+..+|+||+|.+++|++|.+.+..++.++++|+++|+++++|+|||||||||||++|+|+|++++.+|+.++++++
T Consensus 173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l 252 (437)
T 4b4t_I 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSEL 252 (437)
T ss_dssp EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGG
T ss_pred eccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHh
Confidence 34556689999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCc
Q 045456 281 YCN 283 (288)
Q Consensus 281 ~~~ 283 (288)
.++
T Consensus 253 ~sk 255 (437)
T 4b4t_I 253 IQK 255 (437)
T ss_dssp CCS
T ss_pred hhc
Confidence 775
No 4
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.77 E-value=8.4e-19 Score=167.75 Aligned_cols=82 Identities=27% Similarity=0.383 Sum_probs=77.5
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVY 281 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~ 281 (288)
...+..+|+||+|.+++|++|.+.+..++.++++|.++|+++++|+|||||||||||++|+|+|++++.+++.++++++.
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFV 243 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhh
Confidence 34455799999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred Cc
Q 045456 282 CN 283 (288)
Q Consensus 282 ~~ 283 (288)
++
T Consensus 244 ~~ 245 (428)
T 4b4t_K 244 HK 245 (428)
T ss_dssp CS
T ss_pred cc
Confidence 65
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.76 E-value=9e-19 Score=167.87 Aligned_cols=81 Identities=27% Similarity=0.343 Sum_probs=77.3
Q ss_pred CCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCC
Q 045456 203 LDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYC 282 (288)
Q Consensus 203 ~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~ 282 (288)
..+..+|+||+|.+++|++|.+.+..++.+++.|.++|+++++|+|||||||||||++|+|||++++.+|+.++++++.+
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred c
Q 045456 283 N 283 (288)
Q Consensus 283 ~ 283 (288)
+
T Consensus 254 k 254 (437)
T 4b4t_L 254 K 254 (437)
T ss_dssp S
T ss_pred c
Confidence 5
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.7e-18 Score=166.28 Aligned_cols=82 Identities=18% Similarity=0.216 Sum_probs=77.6
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVY 281 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~ 281 (288)
+..+..+|+||+|.+++|++|.+.+..++.+++.|.++|+.+++|+|||||||||||++|+|||++++.+|+.++++++.
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELV 280 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhh
Confidence 34455799999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred Cc
Q 045456 282 CN 283 (288)
Q Consensus 282 ~~ 283 (288)
++
T Consensus 281 sk 282 (467)
T 4b4t_H 281 QK 282 (467)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.55 E-value=2.2e-15 Score=153.80 Aligned_cols=79 Identities=22% Similarity=0.346 Sum_probs=74.8
Q ss_pred CCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCCc
Q 045456 205 HPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYCN 283 (288)
Q Consensus 205 ~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~ 283 (288)
+..+|+||+|.++++++|.+.+..++.+++.|.++|+.+++|+|||||||||||++|+++|+++|.+++.++++++.++
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc
Confidence 3469999999999999999999999999999999999999999999999999999999999999999999999877654
No 8
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.50 E-value=2.9e-14 Score=128.61 Aligned_cols=79 Identities=24% Similarity=0.319 Sum_probs=69.0
Q ss_pred CCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCCc
Q 045456 205 HPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYCN 283 (288)
Q Consensus 205 ~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~ 283 (288)
+..+|+||+|.+++|++|.+.+..++.+++.++.++...++|++|+||||||||+++++||++++.+++.++..++.+.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999999888654
No 9
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.48 E-value=4.4e-14 Score=128.74 Aligned_cols=78 Identities=23% Similarity=0.335 Sum_probs=73.0
Q ss_pred CCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCC
Q 045456 203 LDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSV 280 (288)
Q Consensus 203 ~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~ 280 (288)
..++.+|++|+|.+++++.|.+.+..++.+++.|..+|+..++|+||+||||||||++|+++|++++.+++.++++++
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l 85 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 85 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHH
Confidence 345679999999999999999999999999999999999999999999999999999999999999999999987655
No 10
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.46 E-value=1.4e-13 Score=123.29 Aligned_cols=81 Identities=22% Similarity=0.300 Sum_probs=75.1
Q ss_pred CCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCC
Q 045456 203 LDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYC 282 (288)
Q Consensus 203 ~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~ 282 (288)
..++.+|++|+|.+++++.|.+.+..++..++.+.++|...++++||+||||||||++|+++|++++.+++.++.+++.+
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred c
Q 045456 283 N 283 (288)
Q Consensus 283 ~ 283 (288)
.
T Consensus 90 ~ 90 (285)
T 3h4m_A 90 K 90 (285)
T ss_dssp C
T ss_pred h
Confidence 3
No 11
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.44 E-value=2e-13 Score=125.84 Aligned_cols=79 Identities=25% Similarity=0.344 Sum_probs=70.9
Q ss_pred CCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh-CCcEEEEecCCCCC
Q 045456 204 DHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL-KFNIYDMELTSVYC 282 (288)
Q Consensus 204 ~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-~~~i~~l~~~~~~~ 282 (288)
.++.+|+||+|.+++|+.|.+.+..++.+++.+.. +..+++|+|||||||||||++|+++|+++ +.+++.++.+++.+
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 34579999999999999999999999999998874 34567899999999999999999999999 99999999998765
Q ss_pred c
Q 045456 283 N 283 (288)
Q Consensus 283 ~ 283 (288)
.
T Consensus 85 ~ 85 (322)
T 1xwi_A 85 K 85 (322)
T ss_dssp S
T ss_pred h
Confidence 4
No 12
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.43 E-value=1.4e-14 Score=147.90 Aligned_cols=80 Identities=23% Similarity=0.327 Sum_probs=75.4
Q ss_pred CCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCCc
Q 045456 204 DHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYCN 283 (288)
Q Consensus 204 ~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~ 283 (288)
.++.+|++++|.+++|++|.+.+..++.+++.|.++|+.+++|+|||||||||||++|+|+|++++.+++.++++++.++
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~ 550 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTT
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcc
Confidence 35579999999999999999999999999999999999999999999999999999999999999999999998887654
No 13
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.42 E-value=2.9e-13 Score=119.41 Aligned_cols=76 Identities=25% Similarity=0.355 Sum_probs=63.9
Q ss_pred CCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCC
Q 045456 206 PATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYC 282 (288)
Q Consensus 206 p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~ 282 (288)
+.+|++++|.+++++.|.+.+. ++..++.|.++|...++++||+||||||||++|+++|++++.+++.++.+++.+
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~ 77 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVD-YLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVE 77 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHH-HHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSS
T ss_pred CCCHHHhCCHHHHHHHHHHHHH-HHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHh
Confidence 4689999999999999988766 478888899999999999999999999999999999999999999999988754
No 14
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.41 E-value=3.2e-13 Score=119.53 Aligned_cols=79 Identities=23% Similarity=0.399 Sum_probs=66.6
Q ss_pred CCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCC
Q 045456 203 LDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYC 282 (288)
Q Consensus 203 ~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~ 282 (288)
..++.+|++|+|.+++++.+.+.+. ++.+++.+.++|...++|++|+||||||||++|+++|++++.|++.++.+++.+
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHHH-HHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHHH-HHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 4567899999999999999988765 477888888899989999999999999999999999999999999999888754
No 15
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.40 E-value=1.5e-13 Score=126.29 Aligned_cols=81 Identities=23% Similarity=0.327 Sum_probs=72.0
Q ss_pred cCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCC
Q 045456 201 TNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSV 280 (288)
Q Consensus 201 ~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~ 280 (288)
+...++.+|++|+|.+++|+.|.+.+..++..++.+.. +..+++|+|||||||||||++|+++|++++.+++.++.+++
T Consensus 9 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l 87 (322)
T 3eie_A 9 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 87 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred eecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHH
Confidence 44667789999999999999999999999999988877 44567899999999999999999999999999999998765
Q ss_pred CC
Q 045456 281 YC 282 (288)
Q Consensus 281 ~~ 282 (288)
.+
T Consensus 88 ~~ 89 (322)
T 3eie_A 88 VS 89 (322)
T ss_dssp HT
T ss_pred hh
Confidence 43
No 16
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.38 E-value=4.4e-13 Score=119.14 Aligned_cols=78 Identities=29% Similarity=0.460 Sum_probs=70.4
Q ss_pred CCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCC
Q 045456 204 DHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYC 282 (288)
Q Consensus 204 ~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~ 282 (288)
.++.+|++|+|.+++++.+.+.+. ++..++.|.++|...++|+||+||||||||++|+++|++++.+++.++.+++.+
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHH-HHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHH-HHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 446689999999999999998766 578899999999999999999999999999999999999999999999877654
No 17
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.37 E-value=1e-12 Score=118.44 Aligned_cols=81 Identities=25% Similarity=0.308 Sum_probs=71.8
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVY 281 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~ 281 (288)
...++.+|++++|.+++++.+.+.+..+..+++.+...+ ..++++||+||||||||++|+++|++++.+++.++.+++.
T Consensus 13 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 91 (297)
T 3b9p_A 13 EGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLT 91 (297)
T ss_dssp CCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTS
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHh
Confidence 355778999999999999999999999988888887665 3468999999999999999999999999999999998876
Q ss_pred Cc
Q 045456 282 CN 283 (288)
Q Consensus 282 ~~ 283 (288)
+.
T Consensus 92 ~~ 93 (297)
T 3b9p_A 92 SK 93 (297)
T ss_dssp SS
T ss_pred hc
Confidence 53
No 18
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.37 E-value=3.1e-13 Score=126.06 Aligned_cols=79 Identities=24% Similarity=0.337 Sum_probs=69.1
Q ss_pred CCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCC
Q 045456 203 LDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYC 282 (288)
Q Consensus 203 ~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~ 282 (288)
..++.+|++|+|.+++++.|.+.+..++..++.+.. +..+++|+||+||||||||++|+++|++++.+++.++.+++.+
T Consensus 44 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~ 122 (355)
T 2qp9_X 44 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 122 (355)
T ss_dssp ---CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHS
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhh
Confidence 455679999999999999999999999999998876 5566789999999999999999999999999999999876543
No 19
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.32 E-value=3.4e-12 Score=123.61 Aligned_cols=77 Identities=25% Similarity=0.426 Sum_probs=70.3
Q ss_pred CCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCC
Q 045456 205 HPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYC 282 (288)
Q Consensus 205 ~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~ 282 (288)
.+.+|+||+|.+++++++.+.+. ++.+++.|.++|...++|+||+||||||||++|+++|++++.|++.++.+++..
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~-~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~ 87 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVE-FLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVE 87 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHH-HHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTT
T ss_pred CCCCHHHhCCcHHHHHHHHHHHH-HhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHH
Confidence 45699999999999999998776 577889999999999999999999999999999999999999999999887754
No 20
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.31 E-value=1.8e-12 Score=124.48 Aligned_cols=80 Identities=25% Similarity=0.328 Sum_probs=67.6
Q ss_pred CCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh-CCcEEEEecCCCC
Q 045456 203 LDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL-KFNIYDMELTSVY 281 (288)
Q Consensus 203 ~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-~~~i~~l~~~~~~ 281 (288)
..++.+|++|+|.+++++.|.+.+..++.+++.+.. +..+++|+||+||||||||++|+++|+++ +.+++.++.+++.
T Consensus 127 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 127 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp CCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 456789999999999999999999999998888764 34557899999999999999999999999 9999999998875
Q ss_pred Cc
Q 045456 282 CN 283 (288)
Q Consensus 282 ~~ 283 (288)
+.
T Consensus 206 ~~ 207 (444)
T 2zan_A 206 SK 207 (444)
T ss_dssp --
T ss_pred hh
Confidence 43
No 21
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.31 E-value=2.3e-12 Score=121.32 Aligned_cols=82 Identities=28% Similarity=0.372 Sum_probs=72.5
Q ss_pred cCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCC
Q 045456 201 TNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSV 280 (288)
Q Consensus 201 ~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~ 280 (288)
+...+|.+|++|+|.+++++.|.+.+..+..+++.+...+. ..+++||+||||||||++|++||++++.+++.++++++
T Consensus 106 ~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l 184 (389)
T 3vfd_A 106 VDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRA-PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASL 184 (389)
T ss_dssp BCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGC-CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC
T ss_pred hccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCC-CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHh
Confidence 56778899999999999999999999999998888887764 46899999999999999999999999999999999887
Q ss_pred CCc
Q 045456 281 YCN 283 (288)
Q Consensus 281 ~~~ 283 (288)
.+.
T Consensus 185 ~~~ 187 (389)
T 3vfd_A 185 TSK 187 (389)
T ss_dssp ---
T ss_pred hcc
Confidence 653
No 22
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.31 E-value=2.5e-12 Score=119.92 Aligned_cols=80 Identities=23% Similarity=0.319 Sum_probs=71.0
Q ss_pred CCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCC
Q 045456 203 LDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYC 282 (288)
Q Consensus 203 ~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~ 282 (288)
..+|.+|++|+|.+++++.|.+.+..++..++.+...+ ..++++||+||||||||++|+++|++++.+++.++++++.+
T Consensus 77 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 155 (357)
T 3d8b_A 77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 155 (357)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhc
Confidence 34578999999999999999999999998888887665 45789999999999999999999999999999999988755
Q ss_pred c
Q 045456 283 N 283 (288)
Q Consensus 283 ~ 283 (288)
.
T Consensus 156 ~ 156 (357)
T 3d8b_A 156 K 156 (357)
T ss_dssp S
T ss_pred c
Confidence 3
No 23
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.30 E-value=2.5e-12 Score=125.03 Aligned_cols=78 Identities=22% Similarity=0.347 Sum_probs=73.2
Q ss_pred CCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCC
Q 045456 205 HPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYC 282 (288)
Q Consensus 205 ~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~ 282 (288)
.+.+|++|+|.+++++.|.+.+..++.+++.+..+|...++|+||+||||||||++|+++|++++.+++.++++++.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~ 276 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHT
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhh
Confidence 456899999999999999999999999999999999999999999999999999999999999999999999876643
No 24
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.24 E-value=1.3e-11 Score=108.87 Aligned_cols=77 Identities=23% Similarity=0.346 Sum_probs=67.6
Q ss_pred CCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCC
Q 045456 203 LDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSV 280 (288)
Q Consensus 203 ~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~ 280 (288)
..++.+|++++|.++.++++.+.+.. +..+..+..++...++|++|+||||||||+++++||++++.+++.++..++
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~ 85 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 85 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 44567999999999999999886554 577888999999999999999999999999999999999999999987544
No 25
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.22 E-value=1.5e-11 Score=119.82 Aligned_cols=77 Identities=25% Similarity=0.386 Sum_probs=70.0
Q ss_pred CCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCC
Q 045456 205 HPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYC 282 (288)
Q Consensus 205 ~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~ 282 (288)
++.+|++|+|.+++++++.+.+. ++..++.+.++|...++|+||+||||||||+++++||++++.+++.++.+++.+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~-~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~ 102 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 102 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHH-HHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTS
T ss_pred CCCCHHHcCCcHHHHHHHHHHHH-HhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHH
Confidence 56799999999999999988665 577888899999999999999999999999999999999999999999987654
No 26
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.19 E-value=1.4e-11 Score=126.34 Aligned_cols=79 Identities=20% Similarity=0.322 Sum_probs=73.9
Q ss_pred CCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCC
Q 045456 204 DHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYC 282 (288)
Q Consensus 204 ~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~ 282 (288)
..+.+|++|+|.+++++.|.+.+..++.+++.+..+++..++++||+||||||||++|++||++++.+++.++++++.+
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 3457999999999999999999999999999999999999999999999999999999999999999999999876654
No 27
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.17 E-value=5.2e-11 Score=106.76 Aligned_cols=78 Identities=24% Similarity=0.388 Sum_probs=68.1
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSV 280 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~ 280 (288)
...++.+|++++|.+++++++.+.+. .+..+..+..++...++|++|+||||||||+++++||+.++.+++.++..++
T Consensus 32 ~~~~~~~~~~i~g~~~~~~~l~~l~~-~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~ 109 (278)
T 1iy2_A 32 TEAPKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 109 (278)
T ss_dssp CCCCCCCGGGSSSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHH-HHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHH
Confidence 34467899999999999999987655 4567788999999999999999999999999999999999999999987544
No 28
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.12 E-value=3.9e-11 Score=117.17 Aligned_cols=87 Identities=22% Similarity=0.395 Sum_probs=69.6
Q ss_pred CCCCCccCCCCCCCccccccChhhhHHHHHHHHHHhhc-HHHHHHhCC---cccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 195 GGAWGSTNLDHPATFDKIAMDPSMKQASIDDLDRFVKR-RNFYRRVGK---VWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 195 ~~~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~-~~~~~~~g~---~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
...| ++.++|.+|++|+|.++.++.+.+.+..+... +..+...|. +..+++||+||||||||++|+++|+++++
T Consensus 26 ~~lW--~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~ 103 (516)
T 1sxj_A 26 DKLW--TVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY 103 (516)
T ss_dssp CCCH--HHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCc--ccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3578 46899999999999999999998888765432 122333333 25678999999999999999999999999
Q ss_pred cEEEEecCCCCCc
Q 045456 271 NIYDMELTSVYCN 283 (288)
Q Consensus 271 ~i~~l~~~~~~~~ 283 (288)
+++.+++++..+.
T Consensus 104 ~~i~in~s~~~~~ 116 (516)
T 1sxj_A 104 DILEQNASDVRSK 116 (516)
T ss_dssp EEEEECTTSCCCH
T ss_pred CEEEEeCCCcchH
Confidence 9999999887654
No 29
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.10 E-value=1.2e-10 Score=112.02 Aligned_cols=70 Identities=27% Similarity=0.316 Sum_probs=59.6
Q ss_pred CCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhC--CcEEEEecCCCCCc
Q 045456 206 PATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK--FNIYDMELTSVYCN 283 (288)
Q Consensus 206 p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~--~~i~~l~~~~~~~~ 283 (288)
...|++++|++++++.+...+..+. .|..+++|+||+||||||||++|+++|++++ .+++.++.+++.+.
T Consensus 33 ~~~~~~iiG~~~~~~~l~~~~~~~~--------~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~ 104 (456)
T 2c9o_A 33 KQAASGLVGQENAREACGVIVELIK--------SKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYST 104 (456)
T ss_dssp CSEETTEESCHHHHHHHHHHHHHHH--------TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCS
T ss_pred hhchhhccCHHHHHHHHHHHHHHHH--------hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHH
Confidence 3478999999999998887665332 2666778999999999999999999999999 99999999887654
No 30
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.03 E-value=9.2e-11 Score=106.46 Aligned_cols=44 Identities=16% Similarity=0.021 Sum_probs=39.7
Q ss_pred hCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCC
Q 045456 239 VGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYC 282 (288)
Q Consensus 239 ~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~ 282 (288)
.+..+++|+|||||||||||++|++||++++.+++.++++++.+
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~ 74 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELES 74 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHC
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhh
Confidence 46677899999999999999999999999999999999877644
No 31
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.02 E-value=3.2e-10 Score=108.73 Aligned_cols=73 Identities=19% Similarity=0.237 Sum_probs=60.7
Q ss_pred cccccChhhhHHHHHHHHHHhhcHHHHHHhCCc-ccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCC
Q 045456 210 DKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKV-WKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYC 282 (288)
Q Consensus 210 ~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~-~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~ 282 (288)
++|+|+++.|+.+...+..+..+...+..++.. +++++||+||||||||++|+++|+.++.+++.++.+.+.+
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~ 88 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE 88 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcc
Confidence 368999999999999988777666555444432 5689999999999999999999999999999999887665
No 32
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.99 E-value=5.7e-11 Score=121.90 Aligned_cols=81 Identities=22% Similarity=0.311 Sum_probs=73.7
Q ss_pred CCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCC
Q 045456 203 LDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYC 282 (288)
Q Consensus 203 ~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~ 282 (288)
..+..+|+++++.+++|+.|.+.+..++.+++.+..+++.+++++||+||||||||++|++||++++.+++.++++++.+
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTT
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhh
Confidence 34456999999999999999999988888888888899999999999999999999999999999999999999988765
Q ss_pred c
Q 045456 283 N 283 (288)
Q Consensus 283 ~ 283 (288)
.
T Consensus 550 ~ 550 (806)
T 1ypw_A 550 M 550 (806)
T ss_dssp C
T ss_pred h
Confidence 4
No 33
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.98 E-value=9.5e-10 Score=100.70 Aligned_cols=79 Identities=20% Similarity=0.208 Sum_probs=61.1
Q ss_pred CCCCccCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEE
Q 045456 196 GAWGSTNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDM 275 (288)
Q Consensus 196 ~~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (288)
..|. ...+|.+|++++|.++.++.+...+...... .....++||+||||||||++|+++|+.++.+++.+
T Consensus 17 ~~~~--~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~ 86 (338)
T 3pfi_A 17 ETYE--TSLRPSNFDGYIGQESIKKNLNVFIAAAKKR--------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTT 86 (338)
T ss_dssp --------CCCCSGGGCCSCHHHHHHHHHHHHHHHHT--------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred hhhh--hccCCCCHHHhCChHHHHHHHHHHHHHHHhc--------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 4674 5788999999999999999988877754321 12356799999999999999999999999999999
Q ss_pred ecCCCCCcc
Q 045456 276 ELTSVYCNS 284 (288)
Q Consensus 276 ~~~~~~~~~ 284 (288)
+.+.+....
T Consensus 87 ~~~~~~~~~ 95 (338)
T 3pfi_A 87 AAPMIEKSG 95 (338)
T ss_dssp EGGGCCSHH
T ss_pred cchhccchh
Confidence 987765443
No 34
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.95 E-value=7.8e-10 Score=100.80 Aligned_cols=73 Identities=16% Similarity=0.153 Sum_probs=60.2
Q ss_pred CCCCCccCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEE
Q 045456 195 GGAWGSTNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYD 274 (288)
Q Consensus 195 ~~~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (288)
...| +..++|.+|++++|.++.++.+.+.+.. | ..+..+|++||||||||++++++|++++.+++.
T Consensus 13 ~~~~--~~k~rP~~~~~ivg~~~~~~~l~~~l~~-----------~-~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~ 78 (324)
T 3u61_B 13 EHIL--EQKYRPSTIDECILPAFDKETFKSITSK-----------G-KIPHIILHSPSPGTGKTTVAKALCHDVNADMMF 78 (324)
T ss_dssp CSSH--HHHSCCCSTTTSCCCHHHHHHHHHHHHT-----------T-CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEE
T ss_pred cchH--HHhhCCCCHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEE
Confidence 3467 4688999999999999988877776551 2 235678899999999999999999999999999
Q ss_pred EecCCCC
Q 045456 275 MELTSVY 281 (288)
Q Consensus 275 l~~~~~~ 281 (288)
+++++..
T Consensus 79 i~~~~~~ 85 (324)
T 3u61_B 79 VNGSDCK 85 (324)
T ss_dssp EETTTCC
T ss_pred EcccccC
Confidence 9987653
No 35
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.91 E-value=2e-09 Score=97.57 Aligned_cols=76 Identities=28% Similarity=0.298 Sum_probs=61.6
Q ss_pred CCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCC
Q 045456 203 LDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYC 282 (288)
Q Consensus 203 ~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~ 282 (288)
..+|.+|++++|.+..++.+.+.+...... + ...+++||+||||||||++|+++|+.++.+++.++.+.+..
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~-------~-~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 76 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAKAR-------K-EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK 76 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHHHH-------C-SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHHcc-------C-CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC
Confidence 567889999999999988888777654321 1 23468999999999999999999999999999999888765
Q ss_pred cccc
Q 045456 283 NSEL 286 (288)
Q Consensus 283 ~~~l 286 (288)
..++
T Consensus 77 ~~~l 80 (324)
T 1hqc_A 77 PGDL 80 (324)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 5443
No 36
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.89 E-value=3.5e-09 Score=95.48 Aligned_cols=73 Identities=16% Similarity=0.233 Sum_probs=59.3
Q ss_pred cc-ccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccc---eeEEEcCCCCChHHHHHHHHHHhC-------CcEEEEec
Q 045456 209 FD-KIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKR---GYLLFGPPGTGKSSLIAAMANYLK-------FNIYDMEL 277 (288)
Q Consensus 209 ~~-~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~r---g~LL~GPpGtGKTsla~aiA~~l~-------~~i~~l~~ 277 (288)
++ +|+|.+++++.|.+.+..+.. +..+.+.|+...+ ++||+||||||||++|+++|+.++ .+++.++.
T Consensus 29 l~~~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 29 LDRELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred HHHHccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 44 799999999999998886553 5667777766543 599999999999999999999984 38999988
Q ss_pred CCCCC
Q 045456 278 TSVYC 282 (288)
Q Consensus 278 ~~~~~ 282 (288)
+++.+
T Consensus 108 ~~l~~ 112 (309)
T 3syl_A 108 DDLVG 112 (309)
T ss_dssp GGTCC
T ss_pred HHhhh
Confidence 77654
No 37
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.82 E-value=3.2e-09 Score=95.28 Aligned_cols=73 Identities=21% Similarity=0.262 Sum_probs=55.0
Q ss_pred cccccChhhhHHHHHHHHHHhhcHHHHHHh-CCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCC
Q 045456 210 DKIAMDPSMKQASIDDLDRFVKRRNFYRRV-GKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYC 282 (288)
Q Consensus 210 ~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~-g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~ 282 (288)
++++|.+++++.+...+...+......... +...+.++||+||||||||++|+++|+.++.+++.++.+++.+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~ 88 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE 88 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSS
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhccc
Confidence 358899999999988877644322111111 0123568999999999999999999999999999999887654
No 38
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.82 E-value=7.5e-09 Score=95.55 Aligned_cols=71 Identities=23% Similarity=0.288 Sum_probs=54.5
Q ss_pred CCCCCC-ccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC--cEEEEecCC
Q 045456 203 LDHPAT-FDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF--NIYDMELTS 279 (288)
Q Consensus 203 ~~~p~~-~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~--~i~~l~~~~ 279 (288)
..+|.. |++++|.++.++.+...+.... .|...++++||+||||||||++|+++|+.++. +++.++...
T Consensus 36 ~~~p~~~~~~ivG~~~~~~~l~~l~~~~~--------~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 107 (368)
T 3uk6_A 36 ALEPRQASQGMVGQLAARRAAGVVLEMIR--------EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE 107 (368)
T ss_dssp TSCBCSEETTEESCHHHHHHHHHHHHHHH--------TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG
T ss_pred ccCcCcchhhccChHHHHHHHHHHHHHHH--------cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh
Confidence 345555 9999999999887655443322 14445689999999999999999999999985 788888765
Q ss_pred CC
Q 045456 280 VY 281 (288)
Q Consensus 280 ~~ 281 (288)
+.
T Consensus 108 ~~ 109 (368)
T 3uk6_A 108 IF 109 (368)
T ss_dssp GS
T ss_pred hh
Confidence 43
No 39
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.81 E-value=3.3e-09 Score=98.55 Aligned_cols=71 Identities=23% Similarity=0.229 Sum_probs=53.8
Q ss_pred cccChhhhHHHHHHHHHHhhcHHHHHH-hCC-cccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCC
Q 045456 212 IAMDPSMKQASIDDLDRFVKRRNFYRR-VGK-VWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYC 282 (288)
Q Consensus 212 l~~~~~~k~~i~~~l~~~~~~~~~~~~-~g~-~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~ 282 (288)
|+|++++++.|...+............ .+. ..++++||+||||||||++|++||+.++.|++.++.+++..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~ 89 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTE 89 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcc
Confidence 589999999998888654433211100 111 24678999999999999999999999999999999876653
No 40
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.78 E-value=1.4e-08 Score=94.62 Aligned_cols=70 Identities=24% Similarity=0.284 Sum_probs=53.6
Q ss_pred ccccChhhhHHHHHHHHHHhhcHHH------------------HHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcE
Q 045456 211 KIAMDPSMKQASIDDLDRFVKRRNF------------------YRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNI 272 (288)
Q Consensus 211 ~l~~~~~~k~~i~~~l~~~~~~~~~------------------~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i 272 (288)
.|+|++++|+.|...+.....+... ... ....+.++||+||||||||++|+++|+.++.++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~-~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEE-VELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHH-TTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccc-cccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4789999999998887544433221 011 112356799999999999999999999999999
Q ss_pred EEEecCCCC
Q 045456 273 YDMELTSVY 281 (288)
Q Consensus 273 ~~l~~~~~~ 281 (288)
+.++.+.+.
T Consensus 101 ~~~~~~~~~ 109 (376)
T 1um8_A 101 AISDATSLT 109 (376)
T ss_dssp EEEEGGGCC
T ss_pred EEecchhhh
Confidence 999987764
No 41
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.73 E-value=1.9e-08 Score=96.68 Aligned_cols=66 Identities=20% Similarity=0.415 Sum_probs=53.8
Q ss_pred CCCCCCCccccccChhhh---HHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecC
Q 045456 202 NLDHPATFDKIAMDPSMK---QASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELT 278 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k---~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~ 278 (288)
...+|.+|++++|+++.. +.+...+.. |. ..++||+||||||||++|++||+.++.+++.++..
T Consensus 18 ~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~-----------~~--~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~ 84 (447)
T 3pvs_A 18 ARMRPENLAQYIGQQHLLAAGKPLPRAIEA-----------GH--LHSMILWGPPGTGKTTLAEVIARYANADVERISAV 84 (447)
T ss_dssp HHTCCCSTTTCCSCHHHHSTTSHHHHHHHH-----------TC--CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETT
T ss_pred HHhCCCCHHHhCCcHHHHhchHHHHHHHHc-----------CC--CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEec
Confidence 457899999999999887 555554442 22 25799999999999999999999999999999976
Q ss_pred CC
Q 045456 279 SV 280 (288)
Q Consensus 279 ~~ 280 (288)
..
T Consensus 85 ~~ 86 (447)
T 3pvs_A 85 TS 86 (447)
T ss_dssp TC
T ss_pred cC
Confidence 53
No 42
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.73 E-value=8.5e-09 Score=92.74 Aligned_cols=73 Identities=26% Similarity=0.378 Sum_probs=56.5
Q ss_pred CCCccCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh-----CCc
Q 045456 197 AWGSTNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL-----KFN 271 (288)
Q Consensus 197 ~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~~ 271 (288)
.| +..++|.+|++++|.++.++.+.+.+.. |. ..++||+||||||||++|+++|+.+ +.+
T Consensus 6 ~~--~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~ 70 (319)
T 2chq_A 6 IW--VEKYRPRTLDEVVGQDEVIQRLKGYVER-----------KN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDN 70 (319)
T ss_dssp CT--TTTTSCSSGGGSCSCHHHHHHHHTTTTT-----------TC--CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHH
T ss_pred cH--HHhcCCCCHHHHhCCHHHHHHHHHHHhC-----------CC--CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCC
Confidence 56 4688999999999999888877664431 21 2249999999999999999999997 457
Q ss_pred EEEEecCCCCCcc
Q 045456 272 IYDMELTSVYCNS 284 (288)
Q Consensus 272 i~~l~~~~~~~~~ 284 (288)
++.++.++.....
T Consensus 71 ~~~~~~~~~~~~~ 83 (319)
T 2chq_A 71 FIEMNASDERGID 83 (319)
T ss_dssp CEEEETTSTTCTT
T ss_pred eEEEeCccccChH
Confidence 8888887654433
No 43
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.72 E-value=1.2e-08 Score=85.22 Aligned_cols=70 Identities=19% Similarity=0.262 Sum_probs=50.7
Q ss_pred CCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh----CCcEEEEecCC
Q 045456 204 DHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL----KFNIYDMELTS 279 (288)
Q Consensus 204 ~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~~~~ 279 (288)
..+.+|++++..+...+.+.+.+..+... +.++..++++|+||||||||+++++||+.+ |..++.++..+
T Consensus 4 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~ 77 (180)
T 3ec2_A 4 YWNANLDTYHPKNVSQNRALLTIRVFVHN------FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKD 77 (180)
T ss_dssp CTTCCSSSCCCCSHHHHHHHHHHHHHHHS------CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHH
T ss_pred hhhCccccccCCCHHHHHHHHHHHHHHHh------ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 45679999988655555555655555543 334446789999999999999999999988 66666665543
No 44
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.68 E-value=2.3e-08 Score=82.26 Aligned_cols=64 Identities=19% Similarity=0.374 Sum_probs=50.5
Q ss_pred CCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh----------CCcEE
Q 045456 204 DHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL----------KFNIY 273 (288)
Q Consensus 204 ~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~ 273 (288)
..|.+|++++|.++..+.+.+.+.. ..+++++|+||||||||++++++|+.+ +.+++
T Consensus 16 ~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (195)
T 1jbk_A 16 AEQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL 82 (195)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEE
T ss_pred HhhccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEE
Confidence 4567899999988877766654321 235679999999999999999999997 78888
Q ss_pred EEecCCC
Q 045456 274 DMELTSV 280 (288)
Q Consensus 274 ~l~~~~~ 280 (288)
.++++++
T Consensus 83 ~~~~~~~ 89 (195)
T 1jbk_A 83 ALDMGAL 89 (195)
T ss_dssp EECHHHH
T ss_pred EeeHHHH
Confidence 8886554
No 45
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.68 E-value=4e-08 Score=87.35 Aligned_cols=67 Identities=22% Similarity=0.231 Sum_probs=48.3
Q ss_pred cccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCC
Q 045456 210 DKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTS 279 (288)
Q Consensus 210 ~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~ 279 (288)
+.+++.+...+.+......+. +.+...+...++++||+||||||||++|+++|++++.+++.++.++
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~---~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~ 99 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLV---QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD 99 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHH---HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGG
T ss_pred cCCCCccHHHHHHHHHHHHHH---HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHH
Confidence 345666666555555432222 2233334566789999999999999999999999999999998754
No 46
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.67 E-value=1.4e-08 Score=92.76 Aligned_cols=72 Identities=24% Similarity=0.400 Sum_probs=55.0
Q ss_pred CCCCccCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhC------
Q 045456 196 GAWGSTNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK------ 269 (288)
Q Consensus 196 ~~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~------ 269 (288)
..|. ..++|.+|++++|.+++++.+...+.. |. ..++||+||||||||++++++|+.++
T Consensus 25 ~~~~--~k~~p~~~~~i~g~~~~~~~l~~~l~~-----------~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~ 89 (353)
T 1sxj_D 25 QPWV--EKYRPKNLDEVTAQDHAVTVLKKTLKS-----------AN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMK 89 (353)
T ss_dssp -CHH--HHTCCSSTTTCCSCCTTHHHHHHHTTC-----------TT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHT
T ss_pred ccHH--HhcCCCCHHHhhCCHHHHHHHHHHHhc-----------CC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccc
Confidence 3574 578999999999999988877664431 21 23499999999999999999999975
Q ss_pred CcEEEEecCCCCC
Q 045456 270 FNIYDMELTSVYC 282 (288)
Q Consensus 270 ~~i~~l~~~~~~~ 282 (288)
..+..++.++...
T Consensus 90 ~~~~~~~~~~~~~ 102 (353)
T 1sxj_D 90 SRILELNASDERG 102 (353)
T ss_dssp TSEEEECSSSCCC
T ss_pred cceEEEccccccc
Confidence 3588888776543
No 47
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.67 E-value=2.7e-08 Score=80.49 Aligned_cols=61 Identities=11% Similarity=0.111 Sum_probs=46.9
Q ss_pred ccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCCCCc
Q 045456 211 KIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSVYCN 283 (288)
Q Consensus 211 ~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~ 283 (288)
+++|.+...+.+.+.+..... ....+||+||||||||++|++|++.. +.|++ ++.+.+.+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~-----------~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~ 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE-----------TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT-----------CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS
T ss_pred CceeCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc
Confidence 467777777777776665432 24569999999999999999999987 78999 999877654
No 48
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.67 E-value=3.3e-08 Score=83.31 Aligned_cols=68 Identities=26% Similarity=0.329 Sum_probs=53.3
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh-----CCcEEEEe
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL-----KFNIYDME 276 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~ 276 (288)
...+|.+|++++|.++.++.+.+.+.. + ...+++|+||||||||++++++++.+ ..+++.++
T Consensus 9 ~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 75 (226)
T 2chg_A 9 EKYRPRTLDEVVGQDEVIQRLKGYVER-----------K--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN 75 (226)
T ss_dssp HHTSCSSGGGCCSCHHHHHHHHHHHHT-----------T--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE
T ss_pred HhcCCCCHHHHcCcHHHHHHHHHHHhC-----------C--CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec
Confidence 467889999999998888877665542 1 12359999999999999999999986 46688888
Q ss_pred cCCCCC
Q 045456 277 LTSVYC 282 (288)
Q Consensus 277 ~~~~~~ 282 (288)
.++..+
T Consensus 76 ~~~~~~ 81 (226)
T 2chg_A 76 ASDERG 81 (226)
T ss_dssp TTCTTC
T ss_pred cccccC
Confidence 766544
No 49
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.66 E-value=4.7e-08 Score=89.95 Aligned_cols=76 Identities=24% Similarity=0.266 Sum_probs=55.4
Q ss_pred cCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCC
Q 045456 201 TNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSV 280 (288)
Q Consensus 201 ~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~ 280 (288)
+...+|.+|+++++.+.+++.+...+..-.. .|. ....++|+||||||||+++++||++++.++...+++..
T Consensus 16 ~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~-------~~~-~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~ 87 (334)
T 1in4_A 16 VQFLRPKSLDEFIGQENVKKKLSLALEAAKM-------RGE-VLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 87 (334)
T ss_dssp -CTTSCSSGGGCCSCHHHHHHHHHHHHHHHH-------HTC-CCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTC
T ss_pred HHHcCCccHHHccCcHHHHHHHHHHHHHHHh-------cCC-CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHh
Confidence 3567788999999987766665554432211 122 23579999999999999999999999999888877655
Q ss_pred CCcc
Q 045456 281 YCNS 284 (288)
Q Consensus 281 ~~~~ 284 (288)
....
T Consensus 88 ~~~~ 91 (334)
T 1in4_A 88 VKQG 91 (334)
T ss_dssp CSHH
T ss_pred cCHH
Confidence 4433
No 50
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.64 E-value=2.5e-08 Score=82.11 Aligned_cols=65 Identities=23% Similarity=0.404 Sum_probs=50.6
Q ss_pred CCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh----------CCcE
Q 045456 203 LDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL----------KFNI 272 (288)
Q Consensus 203 ~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i 272 (288)
...|.+|++++|.++..+.+.+.+.. ...++++|+||||||||++++++|+++ +.++
T Consensus 15 ~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~ 81 (187)
T 2p65_A 15 LARAGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKL 81 (187)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEE
T ss_pred HHhccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeE
Confidence 34577899999988776666554321 235689999999999999999999998 7888
Q ss_pred EEEecCCC
Q 045456 273 YDMELTSV 280 (288)
Q Consensus 273 ~~l~~~~~ 280 (288)
+.+++..+
T Consensus 82 ~~~~~~~~ 89 (187)
T 2p65_A 82 VSLDLSSL 89 (187)
T ss_dssp EEECHHHH
T ss_pred EEEeHHHh
Confidence 88876543
No 51
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.64 E-value=3.6e-08 Score=87.23 Aligned_cols=64 Identities=11% Similarity=0.188 Sum_probs=47.0
Q ss_pred CCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhC---CcEEEEecCCCC
Q 045456 207 ATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK---FNIYDMELTSVY 281 (288)
Q Consensus 207 ~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~---~~i~~l~~~~~~ 281 (288)
.+|++++|.+...+.+.+.+..... ...++||+||||||||++|+++++.+. .+++.++++++.
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~-----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~ 69 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP-----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN 69 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT-----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSC
T ss_pred cccccceeCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCC
Confidence 3789999999888888777765432 246799999999999999999999885 789999988763
No 52
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.63 E-value=3.4e-08 Score=90.23 Aligned_cols=58 Identities=16% Similarity=0.177 Sum_probs=47.7
Q ss_pred CCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecC
Q 045456 206 PATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELT 278 (288)
Q Consensus 206 p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~ 278 (288)
|..+++++|.++.++.+...+.. .+++||+||||||||++|+++|+.++.+++.++.+
T Consensus 23 ~~~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~ 80 (331)
T 2r44_A 23 DEVGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFT 80 (331)
T ss_dssp HHHTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHhccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecC
Confidence 44567888888887776654432 25899999999999999999999999999999875
No 53
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.61 E-value=1.1e-08 Score=82.75 Aligned_cols=58 Identities=9% Similarity=-0.018 Sum_probs=45.2
Q ss_pred ccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCC
Q 045456 211 KIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSV 280 (288)
Q Consensus 211 ~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~ 280 (288)
+++|.++..+.+.+.+..+.. ...++||+||||||||++|++|++..+ +++.++++++
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~-----------~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~ 62 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK-----------RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEY 62 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT-----------CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTH
T ss_pred CceeCCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhC
Confidence 467777787888777765432 245799999999999999999999988 9999888765
No 54
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.60 E-value=3.8e-08 Score=88.77 Aligned_cols=70 Identities=23% Similarity=0.381 Sum_probs=54.5
Q ss_pred CCCCccCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhC-----C
Q 045456 196 GAWGSTNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK-----F 270 (288)
Q Consensus 196 ~~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~-----~ 270 (288)
..|. ..++|.+|++++|.++.++.+...+.. |. ..++||+||||||||++|+++|+.+. .
T Consensus 13 ~~~~--~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~ 77 (327)
T 1iqp_A 13 KPWV--EKYRPQRLDDIVGQEHIVKRLKHYVKT-----------GS--MPHLLFAGPPGVGKTTAALALARELFGENWRH 77 (327)
T ss_dssp SCHH--HHTCCCSTTTCCSCHHHHHHHHHHHHH-----------TC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHH
T ss_pred Cchh--hccCCCCHHHhhCCHHHHHHHHHHHHc-----------CC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccC
Confidence 3564 578899999999999888887765542 22 22499999999999999999999973 3
Q ss_pred cEEEEecCCC
Q 045456 271 NIYDMELTSV 280 (288)
Q Consensus 271 ~i~~l~~~~~ 280 (288)
+++.++.++.
T Consensus 78 ~~~~~~~~~~ 87 (327)
T 1iqp_A 78 NFLELNASDE 87 (327)
T ss_dssp HEEEEETTCH
T ss_pred ceEEeecccc
Confidence 5788887654
No 55
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.59 E-value=6.9e-08 Score=88.72 Aligned_cols=71 Identities=27% Similarity=0.425 Sum_probs=53.1
Q ss_pred CCCCccCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhC-----C
Q 045456 196 GAWGSTNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK-----F 270 (288)
Q Consensus 196 ~~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~-----~ 270 (288)
..|. ..++|.+|++++|++++.+.|...+.. |. .+ .++|+||||||||++++++|+.+. .
T Consensus 13 ~~~~--~k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g~-~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~ 77 (340)
T 1sxj_C 13 LPWV--EKYRPETLDEVYGQNEVITTVRKFVDE-----------GK-LP-HLLFYGPPGTGKTSTIVALAREIYGKNYSN 77 (340)
T ss_dssp CCHH--HHTCCSSGGGCCSCHHHHHHHHHHHHT-----------TC-CC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHH
T ss_pred CchH--HHhCCCcHHHhcCcHHHHHHHHHHHhc-----------CC-Cc-eEEEECCCCCCHHHHHHHHHHHHcCCCccc
Confidence 3574 578999999999988777766554431 32 22 399999999999999999999974 3
Q ss_pred cEEEEecCCCC
Q 045456 271 NIYDMELTSVY 281 (288)
Q Consensus 271 ~i~~l~~~~~~ 281 (288)
.+..++.++..
T Consensus 78 ~~~~~~~~~~~ 88 (340)
T 1sxj_C 78 MVLELNASDDR 88 (340)
T ss_dssp HEEEECTTSCC
T ss_pred eEEEEcCcccc
Confidence 47777776543
No 56
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.59 E-value=6.5e-08 Score=81.89 Aligned_cols=69 Identities=25% Similarity=0.317 Sum_probs=49.1
Q ss_pred CCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCc-ccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCC
Q 045456 205 HPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKV-WKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTS 279 (288)
Q Consensus 205 ~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~-~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~ 279 (288)
.+.+|+++.+.+...+.+.+.+..++... ... .+++++|+||||||||++++++++++ +.+++.++.++
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 92 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEY------EPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPE 92 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHC------CSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHh------hhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHH
Confidence 35689999887654454555555554421 111 12789999999999999999999988 67887777654
No 57
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.57 E-value=6.3e-08 Score=87.14 Aligned_cols=72 Identities=15% Similarity=0.238 Sum_probs=55.4
Q ss_pred CCCCccCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh-----CC
Q 045456 196 GAWGSTNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL-----KF 270 (288)
Q Consensus 196 ~~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~ 270 (288)
..|. ..++|.+|++++|.++.++.+.+.+.. +. .+ .+||+||||||||++|+++|+.+ +.
T Consensus 9 ~~~~--~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~-~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~ 73 (323)
T 1sxj_B 9 LPWV--EKYRPQVLSDIVGNKETIDRLQQIAKD-----------GN-MP-HMIISGMPGIGKTTSVHCLAHELLGRSYAD 73 (323)
T ss_dssp CCHH--HHTCCSSGGGCCSCTHHHHHHHHHHHS-----------CC-CC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHH
T ss_pred CcHH--HhcCCCCHHHHHCCHHHHHHHHHHHHc-----------CC-CC-eEEEECcCCCCHHHHHHHHHHHhcCCcccC
Confidence 3564 468899999999999888877765431 22 22 39999999999999999999996 45
Q ss_pred cEEEEecCCCCC
Q 045456 271 NIYDMELTSVYC 282 (288)
Q Consensus 271 ~i~~l~~~~~~~ 282 (288)
+++.++.++..+
T Consensus 74 ~~~~~~~~~~~~ 85 (323)
T 1sxj_B 74 GVLELNASDDRG 85 (323)
T ss_dssp HEEEECTTSCCS
T ss_pred CEEEecCccccC
Confidence 688888776443
No 58
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.54 E-value=1.2e-07 Score=81.37 Aligned_cols=69 Identities=19% Similarity=0.173 Sum_probs=47.8
Q ss_pred CCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhC---CcEEEEecCC
Q 045456 203 LDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK---FNIYDMELTS 279 (288)
Q Consensus 203 ~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~---~~i~~l~~~~ 279 (288)
..++.+|+++++.+ ..+.+.+.+..+... +..++++|+||||||||++++++|++++ .+++.++.++
T Consensus 21 ~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~---------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 21 LPDDETFTSYYPAA-GNDELIGALKSAASG---------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp CCTTCSTTTSCC---CCHHHHHHHHHHHHT---------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCCCChhhccCCC-CCHHHHHHHHHHHhC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 33447999998832 223344444443321 1356899999999999999999999885 7888888776
Q ss_pred CC
Q 045456 280 VY 281 (288)
Q Consensus 280 ~~ 281 (288)
+.
T Consensus 91 ~~ 92 (242)
T 3bos_A 91 HA 92 (242)
T ss_dssp GG
T ss_pred HH
Confidence 54
No 59
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.54 E-value=1.3e-07 Score=86.98 Aligned_cols=57 Identities=26% Similarity=0.363 Sum_probs=46.9
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
..++|.+|++++|.++..+.+...+.. | ..+..+||+||||||||++++++|+.++.
T Consensus 8 ~k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 8 RKWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp HHTCCCSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred HhhCCCchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467899999999999888877776542 2 12457999999999999999999999865
No 60
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.51 E-value=6.2e-08 Score=88.89 Aligned_cols=58 Identities=21% Similarity=0.411 Sum_probs=44.3
Q ss_pred CCCccCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh
Q 045456 197 AWGSTNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 197 ~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
.| +.+++|.+|++++|.++..+.+...+. . .|. .+. ++|+||||||||++++++|+++
T Consensus 3 ~w--~~kyrP~~~~~~vg~~~~~~~l~~~~~---~-------~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 3 LW--VDKYRPKSLNALSHNEELTNFLKSLSD---Q-------PRD-LPH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp -C--TTTTCCCSGGGCCSCHHHHHHHHTTTT---C-------TTC-CCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred cc--hhccCCCCHHHhcCCHHHHHHHHHHHh---h-------CCC-CCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 47 468999999999999887776655431 1 122 233 9999999999999999999965
No 61
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.49 E-value=1.1e-07 Score=91.68 Aligned_cols=63 Identities=21% Similarity=0.376 Sum_probs=49.7
Q ss_pred CCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh----------CCcE
Q 045456 203 LDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL----------KFNI 272 (288)
Q Consensus 203 ~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i 272 (288)
..+|..+++++|.++..+.+.+.+.. ..+.++||+||||||||++|+++|+.+ +.++
T Consensus 173 ~~r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~ 239 (468)
T 3pxg_A 173 IAKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV 239 (468)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCE
T ss_pred HHhcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeE
Confidence 45778999999999888877665431 235689999999999999999999997 8889
Q ss_pred EEEecC
Q 045456 273 YDMELT 278 (288)
Q Consensus 273 ~~l~~~ 278 (288)
+.++++
T Consensus 240 ~~l~~~ 245 (468)
T 3pxg_A 240 MTLDMG 245 (468)
T ss_dssp ECC---
T ss_pred EEeeCC
Confidence 888876
No 62
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.47 E-value=2e-07 Score=79.14 Aligned_cols=57 Identities=26% Similarity=0.390 Sum_probs=46.2
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
....|.+|++++|.++..+.+.+.+.. +. .++.++|+||||||||++++++++.++.
T Consensus 15 ~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 15 RKWRPQTFADVVGQEHVLTALANGLSL-----------GR-IHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp HHTCCCSGGGCCSCHHHHHHHHHHHHH-----------TC-CCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred hccCCccHHHHhCcHHHHHHHHHHHHc-----------CC-CCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 467889999999999888877776542 21 2357999999999999999999998864
No 63
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.46 E-value=1.7e-07 Score=92.01 Aligned_cols=71 Identities=24% Similarity=0.195 Sum_probs=50.2
Q ss_pred CccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCCccc
Q 045456 208 TFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYCNSE 285 (288)
Q Consensus 208 ~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~ 285 (288)
..++++|.+++++.+.+.+....... .. ....++|+||||||||+++++||+.++.++..++++.+.+.++
T Consensus 79 l~~di~G~~~vk~~i~~~~~l~~~~~------~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~ 149 (543)
T 3m6a_A 79 LDEEHHGLEKVKERILEYLAVQKLTK------SL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESE 149 (543)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHHHHSS------SC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhcc------cC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhh
Confidence 35668899998888866544322111 11 2446999999999999999999999999999999988765443
No 64
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.44 E-value=2.7e-07 Score=84.03 Aligned_cols=70 Identities=17% Similarity=0.292 Sum_probs=47.4
Q ss_pred CCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCC
Q 045456 203 LDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTS 279 (288)
Q Consensus 203 ~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~ 279 (288)
+.++.+|++++..+..... ...+......+ + ....+++|+||||||||++++++|+++ +.+++.++.++
T Consensus 4 l~~~~~f~~fv~g~~~~~a-~~~~~~~~~~~------~-~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 4 LNPKYTLENFIVGEGNRLA-YEVVKEALENL------G-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD 75 (324)
T ss_dssp CCTTCCSSSCCCCTTTHHH-HHHHHHHHHTT------T-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCCCCcccCCCCCcHHHH-HHHHHHHHhCc------C-CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH
Confidence 3455689999732222222 22233333221 1 134679999999999999999999999 89999998765
Q ss_pred C
Q 045456 280 V 280 (288)
Q Consensus 280 ~ 280 (288)
+
T Consensus 76 ~ 76 (324)
T 1l8q_A 76 F 76 (324)
T ss_dssp H
T ss_pred H
Confidence 4
No 65
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.40 E-value=1.7e-07 Score=86.12 Aligned_cols=66 Identities=15% Similarity=0.105 Sum_probs=51.3
Q ss_pred CccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh---------CCcEEEEecC
Q 045456 208 TFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL---------KFNIYDMELT 278 (288)
Q Consensus 208 ~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---------~~~i~~l~~~ 278 (288)
..++++|.++..+.+.+.+...+. ...+++++|+||||||||++++++++.+ +.+++.+++.
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 347889988888877765543221 1235679999999999999999999999 8899999987
Q ss_pred CCCC
Q 045456 279 SVYC 282 (288)
Q Consensus 279 ~~~~ 282 (288)
...+
T Consensus 88 ~~~~ 91 (387)
T 2v1u_A 88 HRET 91 (387)
T ss_dssp TSCS
T ss_pred cCCC
Confidence 6554
No 66
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.40 E-value=3.6e-07 Score=82.14 Aligned_cols=70 Identities=19% Similarity=0.277 Sum_probs=50.1
Q ss_pred cccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCCCCc
Q 045456 210 DKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSVYCN 283 (288)
Q Consensus 210 ~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~~ 283 (288)
++++|.+..++.+...+......-. . ...+...+||+||||||||++|+++|+.+ +.+++.++.+.+...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~---~-~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~ 89 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLK---D-PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEK 89 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCS---C-TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCST
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCC---C-CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccccc
Confidence 3567888888888877765432100 0 01122469999999999999999999998 667999998876543
No 67
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.39 E-value=1.9e-07 Score=85.28 Aligned_cols=55 Identities=31% Similarity=0.290 Sum_probs=40.4
Q ss_pred CCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 203 LDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 203 ~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
..+|.+|++++|.++.++.+...+. . +...++||+||||||||++|+++|+.++.
T Consensus 17 ~~~~~~f~~i~G~~~~~~~l~~~~~----~---------~~~~~vLl~G~~GtGKT~la~~la~~~~~ 71 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMKLALLLTAV----D---------PGIGGVLVFGDRGTGKSTAVRALAALLPE 71 (350)
T ss_dssp -CCCCCGGGSCSCHHHHHHHHHHHH----C---------GGGCCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CCCCCCchhccChHHHHHHHHHHhh----C---------CCCceEEEECCCCccHHHHHHHHHHhCcc
Confidence 3456799999999886664322111 1 12346999999999999999999999873
No 68
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.38 E-value=3.3e-07 Score=83.64 Aligned_cols=68 Identities=25% Similarity=0.385 Sum_probs=48.2
Q ss_pred CCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhC----CcEEEEecCC
Q 045456 206 PATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK----FNIYDMELTS 279 (288)
Q Consensus 206 p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~----~~i~~l~~~~ 279 (288)
+.+|+++......+..+.+.+..|+.. .+....++++|+||||||||++|.+||+++. .++..++.++
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~------~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~ 191 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQ------YPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPS 191 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHH------CSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHh------ccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHH
Confidence 468999987664444455555555542 1212357899999999999999999998765 7787777553
No 69
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.38 E-value=2.8e-07 Score=85.14 Aligned_cols=63 Identities=21% Similarity=0.217 Sum_probs=51.9
Q ss_pred cccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh-----------CCcEEEEecC
Q 045456 210 DKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL-----------KFNIYDMELT 278 (288)
Q Consensus 210 ~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----------~~~i~~l~~~ 278 (288)
++++|.++..+.+.+.+...+.. ..+++++|+||||||||++++++++++ +.+++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 78999999988888877665432 234689999999999999999999998 9999999876
Q ss_pred CCC
Q 045456 279 SVY 281 (288)
Q Consensus 279 ~~~ 281 (288)
+..
T Consensus 91 ~~~ 93 (384)
T 2qby_B 91 EVG 93 (384)
T ss_dssp HHC
T ss_pred cCC
Confidence 543
No 70
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.35 E-value=1.2e-06 Score=80.79 Aligned_cols=67 Identities=13% Similarity=0.057 Sum_probs=52.3
Q ss_pred ccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh----CCcEEEEecCCCCC
Q 045456 209 FDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL----KFNIYDMELTSVYC 282 (288)
Q Consensus 209 ~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~~~~~~~ 282 (288)
.+++++.++..+.+.+.+...+.. +.+..+.++|+||||||||++++++++.+ +.+++.+++....+
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~-------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~ 86 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRN-------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN 86 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHS-------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHcC-------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence 378999999988888877765432 11112379999999999999999999999 68899999766543
No 71
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.35 E-value=3.5e-07 Score=79.01 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=30.1
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEE
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYD 274 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (288)
++|.++++|+|||||||||++|.++|+.++-.++.
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 46667789999999999999999999999765543
No 72
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.34 E-value=4.9e-07 Score=91.92 Aligned_cols=62 Identities=21% Similarity=0.388 Sum_probs=50.0
Q ss_pred CCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh----------CCcE
Q 045456 203 LDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL----------KFNI 272 (288)
Q Consensus 203 ~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i 272 (288)
...|..+++++|.++..+.+.+.+.. ..+.++||+||||||||++|+++|+.+ +.++
T Consensus 173 ~~~~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~ 239 (758)
T 3pxi_A 173 IAKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV 239 (758)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCE
T ss_pred HHhhCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeE
Confidence 45677899999999888887765431 235679999999999999999999997 8888
Q ss_pred EEEec
Q 045456 273 YDMEL 277 (288)
Q Consensus 273 ~~l~~ 277 (288)
+.+++
T Consensus 240 ~~~~~ 244 (758)
T 3pxi_A 240 MTLDM 244 (758)
T ss_dssp ECC--
T ss_pred EEecc
Confidence 88776
No 73
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.32 E-value=3.9e-07 Score=83.76 Aligned_cols=41 Identities=10% Similarity=0.152 Sum_probs=34.0
Q ss_pred ccceeEEEcCCCCChHHHHHHHHHHh----------CCcEEEEecCCCCCc
Q 045456 243 WKRGYLLFGPPGTGKSSLIAAMANYL----------KFNIYDMELTSVYCN 283 (288)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~~l~~~~~~~~ 283 (288)
.+.+++|+||||||||++++++++++ ++.++.|++..+.+.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~ 94 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGM 94 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCH
Confidence 46789999999999999999999999 467888888776654
No 74
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.28 E-value=1.4e-06 Score=88.47 Aligned_cols=65 Identities=15% Similarity=0.265 Sum_probs=48.7
Q ss_pred ccccChhhhHHHHHHHHHHhhcHHHHHHhCCc----ccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCCc
Q 045456 211 KIAMDPSMKQASIDDLDRFVKRRNFYRRVGKV----WKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYCN 283 (288)
Q Consensus 211 ~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~----~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~ 283 (288)
+++|+++.++.|...+... +.|.. +...+||+||||||||++|+++|+.++.+++.++.++....
T Consensus 459 ~v~g~~~~~~~l~~~i~~~--------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~ 527 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMER 527 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSS
T ss_pred hccCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcch
Confidence 3566666666666655432 22332 22359999999999999999999999999999999887654
No 75
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.27 E-value=1.3e-06 Score=88.90 Aligned_cols=67 Identities=16% Similarity=0.289 Sum_probs=51.6
Q ss_pred cccccChhhhHHHHHHHHHHhhcHHHHHHhCCcc---cc-eeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCCCC
Q 045456 210 DKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVW---KR-GYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSVYC 282 (288)
Q Consensus 210 ~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~---~r-g~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~ 282 (288)
++++|.++.++.+.+.+..... |... +. ++||+||||||||++|+++|+.+ +.+++.++++++..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~--------~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARA--------GLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTT--------TCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred CcCcChHHHHHHHHHHHHHHHc--------ccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence 4577888888887777664332 2221 22 59999999999999999999998 78999999998876
Q ss_pred cc
Q 045456 283 NS 284 (288)
Q Consensus 283 ~~ 284 (288)
..
T Consensus 563 ~~ 564 (758)
T 3pxi_A 563 KH 564 (758)
T ss_dssp SC
T ss_pred cc
Confidence 53
No 76
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.27 E-value=8.2e-07 Score=91.51 Aligned_cols=66 Identities=21% Similarity=0.319 Sum_probs=50.3
Q ss_pred CCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh----------CCcEE
Q 045456 204 DHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL----------KFNIY 273 (288)
Q Consensus 204 ~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i~ 273 (288)
.+|.+|++++|.++..+.+.+.+. . ..+++++|+||||||||++++++|+.+ +.+++
T Consensus 164 ~r~~~ld~viGr~~~i~~l~~~l~----~---------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 230 (854)
T 1qvr_A 164 AAEGKLDPVIGRDEEIRRVIQILL----R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIV 230 (854)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHH----C---------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEE
T ss_pred HhcCCCcccCCcHHHHHHHHHHHh----c---------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEE
Confidence 457899999999877776665442 1 235679999999999999999999998 89999
Q ss_pred EEecCCCCC
Q 045456 274 DMELTSVYC 282 (288)
Q Consensus 274 ~l~~~~~~~ 282 (288)
.++++++..
T Consensus 231 ~l~~~~l~~ 239 (854)
T 1qvr_A 231 SLQMGSLLA 239 (854)
T ss_dssp EECC-----
T ss_pred EeehHHhhc
Confidence 999888753
No 77
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.26 E-value=1.1e-06 Score=80.04 Aligned_cols=60 Identities=13% Similarity=0.187 Sum_probs=47.7
Q ss_pred ccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCCC
Q 045456 211 KIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSVY 281 (288)
Q Consensus 211 ~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~ 281 (288)
+++|.+...+.+.+.+.... ....++||+||||||||++|++|++.. +.|++.++++.+.
T Consensus 3 ~iig~s~~~~~~~~~~~~~a-----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~ 65 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA-----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALN 65 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC-----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCC
T ss_pred CcEECCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCC
Confidence 56777777777777666532 224579999999999999999999976 6799999988764
No 78
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.20 E-value=6.4e-07 Score=82.16 Aligned_cols=63 Identities=16% Similarity=0.229 Sum_probs=48.6
Q ss_pred CccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh------CCcEEEEecCC
Q 045456 208 TFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL------KFNIYDMELTS 279 (288)
Q Consensus 208 ~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l------~~~i~~l~~~~ 279 (288)
..++++|.++..+.+.+.+...+. + ..++.++|+||||||||++++++++.+ +.+++.+++..
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~--------~-~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYR--------E-EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGG--------T-CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 457889988887777665443221 1 234579999999999999999999999 89999998653
No 79
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.18 E-value=1.7e-06 Score=77.59 Aligned_cols=29 Identities=34% Similarity=0.571 Sum_probs=25.4
Q ss_pred cccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 242 VWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 242 ~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
+.+++++||||||||||++|.|||+.++.
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 45678999999999999999999997644
No 80
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.18 E-value=3.2e-06 Score=80.78 Aligned_cols=68 Identities=18% Similarity=0.336 Sum_probs=46.8
Q ss_pred CCCCCCccccc-cChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh-----CCcEEEEe
Q 045456 203 LDHPATFDKIA-MDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL-----KFNIYDME 276 (288)
Q Consensus 203 ~~~p~~~~~l~-~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~ 276 (288)
+.+..+|++++ |..... ....+..+...+ +. ..+++|+||||||||+++++||+++ +.+++.++
T Consensus 98 l~~~~tfd~fv~g~~n~~--a~~~~~~~a~~~------~~--~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSF--AYHAALEVAKHP------GR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp CCTTCSGGGCCCCTTTHH--HHHHHHHHHHST------TS--SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCCCChhhcCCCCchHH--HHHHHHHHHhCC------CC--CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 33445899988 543322 223333333221 21 5679999999999999999999999 88899888
Q ss_pred cCCC
Q 045456 277 LTSV 280 (288)
Q Consensus 277 ~~~~ 280 (288)
..++
T Consensus 168 ~~~~ 171 (440)
T 2z4s_A 168 SEKF 171 (440)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 81
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.14 E-value=3e-06 Score=86.01 Aligned_cols=67 Identities=22% Similarity=0.342 Sum_probs=51.3
Q ss_pred CCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh----------CCcE
Q 045456 203 LDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL----------KFNI 272 (288)
Q Consensus 203 ~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~i 272 (288)
...|..|++++|.++..+.+.+.+. ...+.++||+||||||||++|+++|+.+ +.++
T Consensus 179 ~~~~~~~d~~iGr~~~i~~l~~~l~-------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~ 245 (758)
T 1r6b_X 179 LARVGGIDPLIGREKELERAIQVLC-------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTI 245 (758)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEE
T ss_pred HHhcCCCCCccCCHHHHHHHHHHHh-------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEE
Confidence 3456799999999887777665432 1246789999999999999999999987 7788
Q ss_pred EEEecCCCCC
Q 045456 273 YDMELTSVYC 282 (288)
Q Consensus 273 ~~l~~~~~~~ 282 (288)
+.++.+.+..
T Consensus 246 ~~~~~~~l~~ 255 (758)
T 1r6b_X 246 YSLDIGSLLA 255 (758)
T ss_dssp EECCCC---C
T ss_pred EEEcHHHHhc
Confidence 8888776653
No 82
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.13 E-value=2.3e-06 Score=93.37 Aligned_cols=73 Identities=12% Similarity=0.145 Sum_probs=51.1
Q ss_pred CCccccccChhhhHHHHHHHHHHhhc----------HHHHHH------hCCc----------ccce--eEEEcCCCCChH
Q 045456 207 ATFDKIAMDPSMKQASIDDLDRFVKR----------RNFYRR------VGKV----------WKRG--YLLFGPPGTGKS 258 (288)
Q Consensus 207 ~~~~~l~~~~~~k~~i~~~l~~~~~~----------~~~~~~------~g~~----------~~rg--~LL~GPpGtGKT 258 (288)
.+|+|+.+.++.|+.+++.+++++.+ ++.++. .|+. +++| +|+|||||||||
T Consensus 1017 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT 1096 (1706)
T 3cmw_A 1017 SSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 1096 (1706)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHH
T ss_pred ceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCChH
Confidence 68999999999999999999999854 445555 3333 4566 999999999999
Q ss_pred HHHHHHHHHh---CCcEEEEecCC
Q 045456 259 SLIAAMANYL---KFNIYDMELTS 279 (288)
Q Consensus 259 sla~aiA~~l---~~~i~~l~~~~ 279 (288)
++|.++|.+. |-|...|+..+
T Consensus 1097 ~la~~~~~~~~~~g~~~~fi~~~~ 1120 (1706)
T 3cmw_A 1097 TLTLQVIAAAQREGKTCAFIDAEH 1120 (1706)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTS
T ss_pred HHHHHHHHHhhhcCCceeEEEccc
Confidence 9999999876 45555665554
No 83
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.05 E-value=4.9e-06 Score=85.70 Aligned_cols=66 Identities=21% Similarity=0.336 Sum_probs=50.2
Q ss_pred cccccChhhhHHHHHHHHHHhhcHHHHHHhCCc----ccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCCCC
Q 045456 210 DKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKV----WKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSVYC 282 (288)
Q Consensus 210 ~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~----~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~ 282 (288)
++++|.++.++.+...+..... |.. +...+||+||||||||++|++||+.+ +.+++.++.+++..
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~--------g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~ 629 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARA--------GLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME 629 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGG--------GCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCS
T ss_pred cccCCcHHHHHHHHHHHHHHhc--------ccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccc
Confidence 4567777777777766654321 211 12369999999999999999999999 88999999988765
Q ss_pred c
Q 045456 283 N 283 (288)
Q Consensus 283 ~ 283 (288)
.
T Consensus 630 ~ 630 (854)
T 1qvr_A 630 K 630 (854)
T ss_dssp S
T ss_pred h
Confidence 4
No 84
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.98 E-value=6.6e-06 Score=79.99 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=27.3
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCC--cEEEEec
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKF--NIYDMEL 277 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~--~i~~l~~ 277 (288)
..++||+||||||||++|++||+.++. ++..+..
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~ 76 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMT 76 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECC
T ss_pred CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 357999999999999999999999854 4444443
No 85
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.97 E-value=4e-06 Score=70.96 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=29.5
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCCcEEEEe
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKFNIYDME 276 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (288)
.+.++|.|||||||||+++++|+.+|+++++.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 446889999999999999999999999998754
No 86
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.92 E-value=6.2e-06 Score=81.82 Aligned_cols=54 Identities=31% Similarity=0.313 Sum_probs=43.6
Q ss_pred CCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 202 NLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 202 ~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
...+|.+|++++|.+.+++.+...+.. ...++|+||||||||++|++||+.+..
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~---------------g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAANQ---------------KRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHHT---------------TCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred ccccccccceEECchhhHhhccccccC---------------CCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 456788999999998877665554331 247999999999999999999999864
No 87
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.91 E-value=1.1e-05 Score=65.56 Aligned_cols=39 Identities=23% Similarity=0.231 Sum_probs=33.5
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCCCC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSVYC 282 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~ 282 (288)
...++|+||+|+|||++++++++.+ |..++.++..++..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~ 77 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPL 77 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhH
Confidence 4568999999999999999999998 77788888876653
No 88
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.84 E-value=1.4e-05 Score=72.83 Aligned_cols=36 Identities=8% Similarity=0.170 Sum_probs=30.6
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHh------CCcEEEEecCC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYL------KFNIYDMELTS 279 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l------~~~i~~l~~~~ 279 (288)
...||||||||||||++|+++|+.+ ..+++.++.++
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~ 59 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG 59 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc
Confidence 3479999999999999999999975 45888888763
No 89
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.84 E-value=2.3e-05 Score=73.48 Aligned_cols=39 Identities=28% Similarity=0.343 Sum_probs=33.7
Q ss_pred hCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEec
Q 045456 239 VGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMEL 277 (288)
Q Consensus 239 ~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~ 277 (288)
.+++.++.++|+||||+||||+++++|+.++..++.++.
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~ 202 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNL 202 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSS
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEec
Confidence 477778889999999999999999999999888776543
No 90
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.73 E-value=3.2e-05 Score=71.70 Aligned_cols=64 Identities=13% Similarity=0.155 Sum_probs=46.7
Q ss_pred CccccccChhhhHHHHHHH-HHHhhcHHHHHHhCC-cccceeEE--EcCCCCChHHHHHHHHHHh---------CCcEEE
Q 045456 208 TFDKIAMDPSMKQASIDDL-DRFVKRRNFYRRVGK-VWKRGYLL--FGPPGTGKSSLIAAMANYL---------KFNIYD 274 (288)
Q Consensus 208 ~~~~l~~~~~~k~~i~~~l-~~~~~~~~~~~~~g~-~~~rg~LL--~GPpGtGKTsla~aiA~~l---------~~~i~~ 274 (288)
..++++|-++..+.|.+.+ ..... |. ..++.+++ +||||||||++++++++.+ +.+++.
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~--------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~ 91 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLS--------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAY 91 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHT--------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhc--------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEE
Confidence 3467888888888777766 54332 21 12456889 9999999999999999887 567778
Q ss_pred EecCC
Q 045456 275 MELTS 279 (288)
Q Consensus 275 l~~~~ 279 (288)
+++..
T Consensus 92 ~~~~~ 96 (412)
T 1w5s_A 92 VNAFN 96 (412)
T ss_dssp EEGGG
T ss_pred EECCC
Confidence 87643
No 91
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.69 E-value=1.9e-05 Score=66.54 Aligned_cols=30 Identities=33% Similarity=0.558 Sum_probs=27.7
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhCCcEEEE
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLKFNIYDM 275 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (288)
-++|.||||+||||+++.+|..++++++++
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 488999999999999999999999998875
No 92
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.66 E-value=4.8e-05 Score=69.73 Aligned_cols=28 Identities=32% Similarity=0.521 Sum_probs=25.0
Q ss_pred ccceeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 243 WKRGYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
.+.++||+||||||||++|+++|+.+..
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 4567999999999999999999999863
No 93
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.63 E-value=6.2e-05 Score=85.41 Aligned_cols=43 Identities=28% Similarity=0.635 Sum_probs=36.0
Q ss_pred cceeEEEcCCCCChHHHH-HHHHHHhCCcEEEEecCCCCCcccc
Q 045456 244 KRGYLLFGPPGTGKSSLI-AAMANYLKFNIYDMELTSVYCNSEL 286 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla-~aiA~~l~~~i~~l~~~~~~~~~~l 286 (288)
.+++||+||||||||++| +++++..+++++.++.++..+..++
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~ 1310 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHI 1310 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHH
Confidence 578999999999999999 6666666899999999887765443
No 94
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.62 E-value=7.7e-05 Score=67.15 Aligned_cols=34 Identities=32% Similarity=0.464 Sum_probs=27.5
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCCcEEEEec
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMEL 277 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~ 277 (288)
+.-++|.||||+||||++++++..++...+.|+.
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 3458899999999999999999998545556654
No 95
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.62 E-value=3.1e-05 Score=65.34 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=28.7
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCCcEEEEe
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKFNIYDME 276 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (288)
+.-++|.||||+||||+++.+++.+|+++++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCC
Confidence 346889999999999999999999998877643
No 96
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.58 E-value=4.8e-05 Score=66.90 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=31.0
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSV 280 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~ 280 (288)
+.-++|.||||+||||+++.++..++.+.+.++...+
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 3458899999999999999999999877777776554
No 97
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.56 E-value=9e-06 Score=75.68 Aligned_cols=33 Identities=21% Similarity=0.381 Sum_probs=28.8
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhCCcEEEEec
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLKFNIYDMEL 277 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~ 277 (288)
..++|.||||+|||+++++||+.++++++.++.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a 57 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHTFLS 57 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeeeecc
Confidence 358999999999999999999999999866443
No 98
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.51 E-value=6.6e-05 Score=64.97 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=29.9
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCCcEEEEe
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKFNIYDME 276 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (288)
...++|.||||+||||+++.||+.+++++++.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d 48 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATG 48 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecHH
Confidence 346999999999999999999999999998863
No 99
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.50 E-value=8.5e-05 Score=62.70 Aligned_cols=30 Identities=20% Similarity=0.453 Sum_probs=26.1
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhCCcEEE
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLKFNIYD 274 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (288)
.-+.|.||||+||||++++|++.+|..+++
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 347899999999999999999999876654
No 100
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.48 E-value=0.00013 Score=69.68 Aligned_cols=68 Identities=22% Similarity=0.207 Sum_probs=39.3
Q ss_pred CCCCCccCCCCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh---CC-
Q 045456 195 GGAWGSTNLDHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL---KF- 270 (288)
Q Consensus 195 ~~~w~~~~~~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~- 270 (288)
.+.| ++.++|.+|++| .+++++.+...+. ++.. + .+.+++.||||||||+++.+++..+ +.
T Consensus 11 ~~~~--~~~~~p~~~~~L--n~~Q~~av~~~~~-~i~~-------~---~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~ 75 (459)
T 3upu_A 11 SSGL--VPRGSHMTFDDL--TEGQKNAFNIVMK-AIKE-------K---KHHVTINGPAGTGATTLTKFIIEALISTGET 75 (459)
T ss_dssp ------------CCSSCC--CHHHHHHHHHHHH-HHHS-------S---SCEEEEECCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred cCCC--ccccCCCccccC--CHHHHHHHHHHHH-HHhc-------C---CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCc
Confidence 3467 468899999986 4566665544333 2322 1 2368899999999999999999887 33
Q ss_pred cEEEEec
Q 045456 271 NIYDMEL 277 (288)
Q Consensus 271 ~i~~l~~ 277 (288)
.++.+..
T Consensus 76 ~il~~a~ 82 (459)
T 3upu_A 76 GIILAAP 82 (459)
T ss_dssp CEEEEES
T ss_pred eEEEecC
Confidence 4555543
No 101
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.46 E-value=1.9e-05 Score=78.25 Aligned_cols=29 Identities=28% Similarity=0.528 Sum_probs=26.7
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhCCcEEE
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLKFNIYD 274 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (288)
++||+||||||||++|+++|+.++..++.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~ 357 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYT 357 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECC
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceec
Confidence 69999999999999999999999877765
No 102
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.44 E-value=8.2e-05 Score=64.54 Aligned_cols=31 Identities=23% Similarity=0.502 Sum_probs=27.2
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCCcEEE
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKFNIYD 274 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (288)
++-++|.||||+||+|.|+.||+.+|++.+.
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~hIs 59 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFNHLS 59 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence 4568899999999999999999999987653
No 103
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.43 E-value=0.00015 Score=65.45 Aligned_cols=58 Identities=21% Similarity=0.127 Sum_probs=42.5
Q ss_pred CCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCC
Q 045456 206 PATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSV 280 (288)
Q Consensus 206 p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~ 280 (288)
+..-+.++|-++..+.|.+ +. . +.++++||+|+|||++++.+++.++.+++.+++...
T Consensus 9 ~~~~~~~~gR~~el~~L~~-l~----~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~ 66 (357)
T 2fna_A 9 KDNRKDFFDREKEIEKLKG-LR----A------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKF 66 (357)
T ss_dssp CCSGGGSCCCHHHHHHHHH-TC----S------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred CCCHHHhcChHHHHHHHHH-hc----C------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhh
Confidence 3455667776655444433 22 1 478999999999999999999999888888887653
No 104
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.40 E-value=8.8e-05 Score=64.91 Aligned_cols=32 Identities=19% Similarity=0.419 Sum_probs=28.4
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCCcEEEE
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKFNIYDM 275 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (288)
+.-++|.||||+||||+++.+++.+|.++++.
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 34588999999999999999999999888765
No 105
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.40 E-value=0.00039 Score=62.59 Aligned_cols=57 Identities=21% Similarity=0.108 Sum_probs=42.0
Q ss_pred CCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecC
Q 045456 205 HPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELT 278 (288)
Q Consensus 205 ~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~ 278 (288)
++..-+.++|-++..+.|.+.+.. | +.++++||+|+|||++++.+++..+ .+.+++.
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~ 63 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCR 63 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHH
T ss_pred CCCChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEee
Confidence 444556778877766666654431 2 5799999999999999999999986 5556553
No 106
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.39 E-value=4.1e-05 Score=70.40 Aligned_cols=37 Identities=16% Similarity=0.103 Sum_probs=28.5
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEe
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDME 276 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (288)
|++..+.++|+||||||||++|.++|...|.++..++
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs 155 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYAT 155 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEE
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEE
Confidence 5555566899999999999999999987665533333
No 107
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.38 E-value=0.00012 Score=64.69 Aligned_cols=32 Identities=31% Similarity=0.563 Sum_probs=29.1
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhCCcEEEEe
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLKFNIYDME 276 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (288)
.-+.|.||||+||||+++++|+.+|+++++.+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 45889999999999999999999999998754
No 108
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.33 E-value=0.00015 Score=63.25 Aligned_cols=30 Identities=23% Similarity=0.543 Sum_probs=26.2
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhCCcEEE
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLKFNIYD 274 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (288)
.-+.|.||||+||||++++||+.+|...++
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 458899999999999999999999876554
No 109
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.28 E-value=0.00029 Score=59.41 Aligned_cols=40 Identities=15% Similarity=0.124 Sum_probs=33.0
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~ 279 (288)
|++...-++++||||+|||+++..+|...+.+++.++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4554455889999999999999999987788888888765
No 110
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.25 E-value=0.00027 Score=59.51 Aligned_cols=35 Identities=26% Similarity=0.283 Sum_probs=27.5
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTS 279 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~ 279 (288)
.-+.|.||+||||||+++++|+.+ |...+.++..+
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~ 63 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDN 63 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence 347799999999999999999999 65544555433
No 111
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.20 E-value=0.00025 Score=62.29 Aligned_cols=29 Identities=34% Similarity=0.584 Sum_probs=26.4
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhCCcEEE
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLKFNIYD 274 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (288)
-+.|.||+|+||||+++.+|+.||+++++
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 47799999999999999999999988775
No 112
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.16 E-value=0.00083 Score=66.93 Aligned_cols=56 Identities=27% Similarity=0.409 Sum_probs=36.2
Q ss_pred CccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecC
Q 045456 208 TFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELT 278 (288)
Q Consensus 208 ~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 278 (288)
.|-+=.+++.+++.|...+.. +.-.|++||||||||+++..+..++ +..+..+..+
T Consensus 184 ~~~~~~LN~~Q~~AV~~al~~---------------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 184 TFFNTCLDTSQKEAVLFALSQ---------------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp CCSSTTCCHHHHHHHHHHHHC---------------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cccCCCCCHHHHHHHHHHhcC---------------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 333335677888877665431 1236889999999998766655443 5566665544
No 113
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.12 E-value=0.00036 Score=59.79 Aligned_cols=40 Identities=20% Similarity=0.148 Sum_probs=31.5
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHH--h-------CCcEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANY--L-------KFNIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~--l-------~~~i~~l~~~~ 279 (288)
|++...-++|+||||+|||+++..+|.. + +..++.++..+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 4554555889999999999999999985 3 45677887765
No 114
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.10 E-value=0.00042 Score=59.94 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=28.6
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCCcEEEE
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKFNIYDM 275 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (288)
..-+.|.||+|+|||++++.+|+.+|+++++.
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 34578999999999999999999999998875
No 115
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.09 E-value=0.00053 Score=58.06 Aligned_cols=39 Identities=21% Similarity=0.036 Sum_probs=29.7
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELT 278 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 278 (288)
|++...-++|.||||+|||++++.+|..+ +.+++.++..
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 44444458899999999999999999664 5677766654
No 116
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.04 E-value=0.00042 Score=60.61 Aligned_cols=37 Identities=27% Similarity=0.249 Sum_probs=29.8
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhCCc--------EEEEecCCCC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLKFN--------IYDMELTSVY 281 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~--------i~~l~~~~~~ 281 (288)
.-+.|.||||+||||+++.+|..+|++ +..++..++.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 347799999999999999999999987 3356655553
No 117
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.03 E-value=0.00038 Score=79.18 Aligned_cols=43 Identities=28% Similarity=0.402 Sum_probs=38.4
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCCcccc
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYCNSEL 286 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~~~l 286 (288)
..|.++.||||||||++++++|+.+|.+++.+++++-.+-.++
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~l 687 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVL 687 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHH
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHh
Confidence 4689999999999999999999999999999999987765543
No 118
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.99 E-value=0.00029 Score=65.03 Aligned_cols=33 Identities=27% Similarity=0.427 Sum_probs=28.9
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhCCcEEEEecC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLKFNIYDMELT 278 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~ 278 (288)
-++|.||+|+|||+++..||+.++.+|++.+.-
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 578999999999999999999999888776543
No 119
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.96 E-value=0.00032 Score=59.16 Aligned_cols=30 Identities=17% Similarity=0.309 Sum_probs=25.3
Q ss_pred eEEEcCCCCChHHHHHHHHHHh-CCcEEEEe
Q 045456 247 YLLFGPPGTGKSSLIAAMANYL-KFNIYDME 276 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l-~~~i~~l~ 276 (288)
+.+.||||+||||+++.+++.+ +++++..+
T Consensus 24 i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp EEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 6789999999999999999988 66665543
No 120
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.94 E-value=0.00078 Score=57.11 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=29.2
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHhCC---------cEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYLKF---------NIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~---------~i~~l~~~~ 279 (288)
|++...-+.|.||||+|||++++.|+..+-. ..+.++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 4444444889999999999999999986533 266666544
No 121
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.93 E-value=0.00068 Score=61.77 Aligned_cols=41 Identities=17% Similarity=0.193 Sum_probs=33.1
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh---------CCcEEEEecCCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL---------KFNIYDMELTSV 280 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---------~~~i~~l~~~~~ 280 (288)
|++...-++++||||+|||+++..+|... +.+++.++...-
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 55555558899999999999999999875 567888887654
No 122
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.90 E-value=0.0009 Score=57.33 Aligned_cols=40 Identities=25% Similarity=0.136 Sum_probs=30.4
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~ 279 (288)
|++...-+++.||||+|||+++..+|..+ +.+++.++...
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 55555558899999999999988887643 66787777654
No 123
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.88 E-value=0.00045 Score=61.76 Aligned_cols=29 Identities=34% Similarity=0.321 Sum_probs=25.9
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhCCcEEEE
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLKFNIYDM 275 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (288)
-+.|.||||+||||+++.++ .+|+++++.
T Consensus 77 iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 47899999999999999999 689988765
No 124
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.84 E-value=0.0022 Score=54.05 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=27.4
Q ss_pred eeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELT 278 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 278 (288)
-+.+.||+|+||||+++.++..+ +.+++.++..
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 36789999999999999999986 6777776544
No 125
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.83 E-value=0.0011 Score=61.70 Aligned_cols=41 Identities=17% Similarity=0.084 Sum_probs=32.1
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSV 280 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~ 280 (288)
|++..+-++++||||+|||+|+..+|..+ +.+++.++....
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s 100 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA 100 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 45544458899999999999999999875 567777877654
No 126
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.78 E-value=0.0013 Score=60.45 Aligned_cols=41 Identities=20% Similarity=0.061 Sum_probs=32.2
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh---------CCcEEEEecCCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL---------KFNIYDMELTSV 280 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---------~~~i~~l~~~~~ 280 (288)
|++...-++++||||+|||+++..+|... +..++.++....
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 45444447899999999999999999872 567888887653
No 127
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.77 E-value=0.00045 Score=65.31 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=26.0
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhCCcEEE
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLKFNIYD 274 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~ 274 (288)
.-++|.||||+||||+++.++..+++.+++
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 447899999999999999999999876654
No 128
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.77 E-value=0.001 Score=56.46 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=27.0
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhC----CcEEEEec
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLK----FNIYDMEL 277 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~----~~i~~l~~ 277 (288)
.-++|.||||+||||+++.+++.++ .+++.++.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 3477899999999999999999875 55666654
No 129
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.73 E-value=0.0016 Score=55.75 Aligned_cols=40 Identities=25% Similarity=0.142 Sum_probs=30.1
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHH----hCCcEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANY----LKFNIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~----l~~~i~~l~~~~ 279 (288)
|++...-++++|+||+|||++|..+|.. .+.+++.++...
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~ 69 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC
Confidence 5555555889999999999998876533 377888877653
No 130
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.73 E-value=0.0016 Score=60.47 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=32.8
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~ 279 (288)
|++..+-++++||||+|||++|..+|..+ |.+++.++...
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 56666668999999999999999988764 67888888754
No 131
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.72 E-value=0.00086 Score=57.60 Aligned_cols=39 Identities=26% Similarity=0.158 Sum_probs=27.9
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHH--HH--hCCcEEEEecC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMA--NY--LKFNIYDMELT 278 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA--~~--l~~~i~~l~~~ 278 (288)
|++...-+.|.||+|+||||++++|+ .. -+.....+...
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~ 68 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 44444458899999999999999998 33 34555555543
No 132
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.71 E-value=0.0012 Score=59.77 Aligned_cols=53 Identities=17% Similarity=0.328 Sum_probs=33.2
Q ss_pred hhhhHHHHHHHHHHhhcHHHHHHhCCcccc--eeEEEcCCCCChHHHHHHHHHHh
Q 045456 216 PSMKQASIDDLDRFVKRRNFYRRVGKVWKR--GYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 216 ~~~k~~i~~~l~~~~~~~~~~~~~g~~~~r--g~LL~GPpGtGKTsla~aiA~~l 268 (288)
+.+++.+.+.+...+........+.....+ -+.|.||+|+||||+++.||+.+
T Consensus 70 ~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 70 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp HHHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 345566666666655432200112222233 37799999999999999999987
No 133
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.70 E-value=0.00082 Score=57.59 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=26.5
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCCcEEEEe
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKFNIYDME 276 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (288)
.+++++.||||+|||++|..+|.... +++..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 46799999999999999999998876 555443
No 134
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.70 E-value=0.0017 Score=54.98 Aligned_cols=23 Identities=43% Similarity=0.638 Sum_probs=21.4
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+.+.||+|+||||++++|++.+.
T Consensus 25 v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 25 VALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEECCTTSCTHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 66899999999999999999986
No 135
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.69 E-value=0.0015 Score=60.50 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=31.6
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~ 279 (288)
|++..+-++++||||+|||+++..+|..+ +.+++.++...
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 45555558999999999999999998664 56778787764
No 136
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.67 E-value=0.0017 Score=53.24 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=21.4
Q ss_pred eeEEEcCCCCChHHHHHHHHHHh
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l 268 (288)
-+.|.||.|+||||++++|++.+
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 37799999999999999999988
No 137
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.67 E-value=0.0016 Score=60.49 Aligned_cols=52 Identities=17% Similarity=0.311 Sum_probs=32.5
Q ss_pred hhhHHHHHHHHHHhhcHHHHHHhCCccc--ceeEEEcCCCCChHHHHHHHHHHh
Q 045456 217 SMKQASIDDLDRFVKRRNFYRRVGKVWK--RGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 217 ~~k~~i~~~l~~~~~~~~~~~~~g~~~~--rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
.+++.+.+.+...+........+....+ .-+.|.||+|+||||+++.||+.+
T Consensus 128 ~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 128 EIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp HHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4555566666555543221111222223 347799999999999999999987
No 138
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.66 E-value=0.00098 Score=57.17 Aligned_cols=23 Identities=35% Similarity=0.681 Sum_probs=21.2
Q ss_pred eeEEEcCCCCChHHHHHHHHHHh
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l 268 (288)
-+.|.||+|+||||++++|++.+
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 37799999999999999999987
No 139
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.62 E-value=0.0015 Score=72.36 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=33.3
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSV 280 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~ 280 (288)
|++..++++|+||||||||+||.++|.+. |..+..++..+.
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 1466 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc
Confidence 37778889999999999999999998775 566777776644
No 140
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.60 E-value=0.0023 Score=57.04 Aligned_cols=39 Identities=18% Similarity=0.084 Sum_probs=30.2
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh----CCcEEEEecC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL----KFNIYDMELT 278 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~~~ 278 (288)
|++...-++|.||||+|||++++.||..+ |.+++.++..
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 55444458899999999999999999876 4567766654
No 141
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.58 E-value=0.002 Score=59.82 Aligned_cols=23 Identities=52% Similarity=0.907 Sum_probs=21.1
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+++.||+|+||||+.++|++.+.
T Consensus 126 i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 126 VLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhccc
Confidence 77899999999999999998874
No 142
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.55 E-value=0.002 Score=59.42 Aligned_cols=41 Identities=20% Similarity=0.231 Sum_probs=31.0
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHhC---------CcEEEEecCCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYLK---------FNIYDMELTSV 280 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l~---------~~i~~l~~~~~ 280 (288)
|++...-+.|+||||+|||+|+..+|..+. -.++.++..+.
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence 444444488999999999999999999872 35567776543
No 143
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.54 E-value=0.0021 Score=59.90 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=32.4
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~ 279 (288)
|++..+-++++||||+|||++|..+|..+ +.+++.++...
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 55555568899999999999999988764 67888888764
No 144
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=96.53 E-value=0.0054 Score=57.27 Aligned_cols=61 Identities=10% Similarity=0.220 Sum_probs=43.6
Q ss_pred cccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhC---CcEEEEecCCCC
Q 045456 210 DKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLK---FNIYDMELTSVY 281 (288)
Q Consensus 210 ~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~---~~i~~l~~~~~~ 281 (288)
+.+++.....+.+.+.+.... .....+|++|++||||+.+|++|....+ .|++.++++++.
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a-----------~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~ 200 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKIS-----------CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIP 200 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHT-----------TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSC
T ss_pred hhhhhccHHhhHHHHHHHHhc-----------CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCC
Confidence 345555555555555444321 1234589999999999999999998864 699999988764
No 145
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.48 E-value=0.0031 Score=56.77 Aligned_cols=25 Identities=32% Similarity=0.309 Sum_probs=22.2
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
-+.+.||+|+||||+++.|+..++.
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3668999999999999999999863
No 146
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.47 E-value=0.002 Score=62.41 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=20.7
Q ss_pred eEEEcCCCCChHHHHHHHHHHh
Q 045456 247 YLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l 268 (288)
+.|.||+|+||||+++.||+.+
T Consensus 296 I~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 296 ILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCcccHHHHHHHHHHHh
Confidence 7799999999999999999987
No 147
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.47 E-value=0.0026 Score=55.07 Aligned_cols=29 Identities=24% Similarity=0.500 Sum_probs=24.9
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC--CcEEEE
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK--FNIYDM 275 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~--~~i~~l 275 (288)
+.|.||||+||||+++.+++.++ .+++..
T Consensus 29 i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 29 ITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 66899999999999999999996 566544
No 148
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.46 E-value=0.0018 Score=54.81 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=21.4
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+.|.||+|+||||++++|++.+.
T Consensus 23 ~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 23 VVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 67999999999999999999884
No 149
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.46 E-value=0.0014 Score=58.00 Aligned_cols=29 Identities=31% Similarity=0.290 Sum_probs=23.2
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
|++...-++|+||||+|||+++..+|..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44444458899999999999999999754
No 150
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.46 E-value=0.0037 Score=71.99 Aligned_cols=43 Identities=26% Similarity=0.589 Sum_probs=33.5
Q ss_pred cceeEEEcCCCCChHHHHHH-HHHHhCCcEEEEecCCCCCcccc
Q 045456 244 KRGYLLFGPPGTGKSSLIAA-MANYLKFNIYDMELTSVYCNSEL 286 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~a-iA~~l~~~i~~l~~~~~~~~~~l 286 (288)
.+.+||+||||||||+++.. +++..+.+++.++.++-.+..+|
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l 1347 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELL 1347 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHH
Confidence 46799999999999987654 55555788999999887765443
No 151
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.44 E-value=0.002 Score=58.57 Aligned_cols=30 Identities=37% Similarity=0.586 Sum_probs=25.0
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
.++...-+.|.||+|+|||||+++|++.+.
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 444445588999999999999999999873
No 152
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.43 E-value=0.002 Score=64.17 Aligned_cols=32 Identities=28% Similarity=0.497 Sum_probs=29.4
Q ss_pred eeEEEcCCCCChHHHHHHHHHHh---CCcEEEEec
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYL---KFNIYDMEL 277 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~ 277 (288)
-++|.|+||+||||+++++|..| |.+++.++.
T Consensus 54 lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDg 88 (630)
T 1x6v_B 54 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 88 (630)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEech
Confidence 47899999999999999999999 999999864
No 153
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.43 E-value=0.002 Score=58.27 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=31.4
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh---------------C----CcEEEEecCCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL---------------K----FNIYDMELTSV 280 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---------------~----~~i~~l~~~~~ 280 (288)
|++...-++++||||+|||++|..+|... | .+++.++...-
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~ 153 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT 153 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC
Confidence 55544558899999999999999999753 2 57777877653
No 154
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.39 E-value=0.0019 Score=56.08 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=22.7
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
+-|.||+|+||||+++.|++.+|..
T Consensus 28 igI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 28 IGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhchh
Confidence 5689999999999999999998865
No 155
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.39 E-value=0.0029 Score=60.21 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=27.9
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELT 278 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 278 (288)
++-+++.||||+||||++..+|..+ |..+..+++.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 3457889999999999999999776 6667666644
No 156
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.35 E-value=0.0045 Score=60.96 Aligned_cols=33 Identities=33% Similarity=0.373 Sum_probs=26.3
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEec
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMEL 277 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~ 277 (288)
+-+++.||||||||+++.+++..+ +.++..+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 458899999999999999998754 666665543
No 157
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.34 E-value=0.0023 Score=58.16 Aligned_cols=59 Identities=12% Similarity=0.035 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEec
Q 045456 218 MKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMEL 277 (288)
Q Consensus 218 ~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~ 277 (288)
.++.+.+.+...+.....+ .+....++-+++.||+|+||||++..+|..+ +..+..++.
T Consensus 79 ~~~~~~~~l~~~l~~~~~~-~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 79 ALESLKEIILEILNFDTKL-NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp HHHHHHHHHHHHTCSCCCC-CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCC-cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 4555555555555432100 1111223447899999999999999999876 455665554
No 158
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.32 E-value=0.0027 Score=54.03 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=22.0
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+-+.|.||+|+||||++++|++.+.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3477899999999999999998865
No 159
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.28 E-value=0.0032 Score=59.30 Aligned_cols=41 Identities=24% Similarity=0.127 Sum_probs=29.3
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh---------CCcEEEEecCCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL---------KFNIYDMELTSV 280 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---------~~~i~~l~~~~~ 280 (288)
|++...-++|+||||||||+|+..+|-.. +..++.++..+.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~ 223 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT 223 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc
Confidence 44444448899999999999999776433 234777877653
No 160
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.27 E-value=0.0029 Score=57.90 Aligned_cols=33 Identities=18% Similarity=0.172 Sum_probs=25.9
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCC-----cEEEEecCC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKF-----NIYDMELTS 279 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~-----~i~~l~~~~ 279 (288)
+.+.||+||||||++++|+..++. .+..+....
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 568999999999999999999863 355555443
No 161
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.26 E-value=0.0043 Score=59.21 Aligned_cols=63 Identities=17% Similarity=0.294 Sum_probs=39.7
Q ss_pred hhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCC
Q 045456 216 PSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTS 279 (288)
Q Consensus 216 ~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~ 279 (288)
+.+++.+.+.+...+......... ...+.-+++.||||+||||++..+|..+ |..+..+++..
T Consensus 73 ~~v~~~l~~eL~~~L~~~~~~~~~-~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 73 EHIIKIVYEELTKFLGTEAKPIEI-KEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138 (443)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCCCC-CSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred HHHHHHHHHHHHHHhcCccccccc-CCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 345555666666655431110000 0124558899999999999999999876 66777776543
No 162
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.22 E-value=0.0054 Score=56.20 Aligned_cols=24 Identities=38% Similarity=0.607 Sum_probs=21.6
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
.-+.|.||+|+||||+++.||+.+
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 347799999999999999999887
No 163
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.21 E-value=0.0063 Score=57.62 Aligned_cols=56 Identities=25% Similarity=0.316 Sum_probs=37.6
Q ss_pred CCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccce-eEEEcCCCCChHHHHHHHHHHhCC---cEEEEe
Q 045456 206 PATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRG-YLLFGPPGTGKSSLIAAMANYLKF---NIYDME 276 (288)
Q Consensus 206 p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg-~LL~GPpGtGKTsla~aiA~~l~~---~i~~l~ 276 (288)
+.+++++......+..+.+. + ..+.| +++.||+|+||||+.++|++.+.. .++.+.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l----~-----------~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~e 202 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL----I-----------KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVE 202 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH----H-----------TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE
T ss_pred CCCHHHcCCCHHHHHHHHHH----H-----------HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEec
Confidence 34788887766544333221 1 11344 679999999999999999999853 455554
No 164
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.20 E-value=0.0055 Score=55.90 Aligned_cols=35 Identities=31% Similarity=0.522 Sum_probs=27.9
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELT 278 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 278 (288)
++-+++.||+|+||||++..||..+ +..+..++..
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3447899999999999999999876 5667666653
No 165
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.18 E-value=0.0041 Score=61.69 Aligned_cols=32 Identities=31% Similarity=0.352 Sum_probs=23.6
Q ss_pred eeEEEcCCCCChHHHHHHHHHHh----CCcEEEEec
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYL----KFNIYDMEL 277 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~~ 277 (288)
-.++.||||||||+++..++..+ +..+..+..
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~ 232 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAP 232 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEES
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 47899999999999888777654 345555443
No 166
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.17 E-value=0.005 Score=56.45 Aligned_cols=40 Identities=18% Similarity=0.006 Sum_probs=28.7
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh-----CCcEEEEecCCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL-----KFNIYDMELTSV 280 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~~i~~l~~~~~ 280 (288)
|++.. -++++||||+|||+|+..++..+ +-.+..++..+-
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s 69 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFG 69 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCC
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccch
Confidence 44443 36789999999999977666544 567777877543
No 167
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.16 E-value=0.0037 Score=55.33 Aligned_cols=24 Identities=46% Similarity=0.801 Sum_probs=21.5
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+++.||+|+||||++++|++.+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHhCC
Confidence 377999999999999999999864
No 168
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.14 E-value=0.0024 Score=62.11 Aligned_cols=34 Identities=18% Similarity=0.330 Sum_probs=27.0
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELT 278 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 278 (288)
.-++|.|+||+|||++++.+|..+ +.+...++..
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D 72 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVG 72 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEeccc
Confidence 358899999999999999999998 4455455543
No 169
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.12 E-value=0.0065 Score=55.04 Aligned_cols=39 Identities=18% Similarity=0.167 Sum_probs=31.0
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELT 278 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 278 (288)
|++...-+++.|+||+|||+++..+|... +.++..+++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 56555558999999999999999998664 4678877765
No 170
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.02 E-value=0.0043 Score=53.48 Aligned_cols=26 Identities=38% Similarity=0.543 Sum_probs=23.1
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
.+-+.|.||+|+|||||+++|++.+.
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 44577999999999999999999886
No 171
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=96.01 E-value=0.018 Score=53.32 Aligned_cols=61 Identities=18% Similarity=0.178 Sum_probs=44.0
Q ss_pred ccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHhCCc--EEEEecCCCCC
Q 045456 211 KIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYLKFN--IYDMELTSVYC 282 (288)
Q Consensus 211 ~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~--i~~l~~~~~~~ 282 (288)
.+++......++.+.+..... ....+|++|++||||+.+|++|....+.. ++.++++.+..
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~-----------~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~ 192 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAK-----------SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQ 192 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHT-----------SCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCT
T ss_pred cccccchHHHHHHhhhhhhhc-----------cchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCCh
Confidence 456666665555554443221 23459999999999999999999887654 99999987643
No 172
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.99 E-value=0.0023 Score=54.87 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=14.2
Q ss_pred eEEEcCCCCChHHHHHHHH-HHh
Q 045456 247 YLLFGPPGTGKSSLIAAMA-NYL 268 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA-~~l 268 (288)
+.|.||+|+||||++++|+ +.+
T Consensus 30 i~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 30 LVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEECSCC----CHHHHHHC---
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 6789999999999999999 876
No 173
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.95 E-value=0.0053 Score=57.13 Aligned_cols=26 Identities=42% Similarity=0.709 Sum_probs=22.5
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
..-+++.||+|+||||++++|++.+.
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 33478999999999999999999864
No 174
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.91 E-value=0.0051 Score=59.77 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=28.1
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCC--cEEEEecC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKF--NIYDMELT 278 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~--~i~~l~~~ 278 (288)
..++++.||+|+||||+++++++.+.- .++.++..
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~ 296 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDT 296 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCc
Confidence 346899999999999999999998853 46666544
No 175
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.88 E-value=0.0047 Score=50.63 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.7
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
.+++||.|+|||+++.||+..++
T Consensus 29 ~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 29 TAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEECTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 56899999999999999998775
No 176
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.86 E-value=0.0039 Score=56.33 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=21.3
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+-|.||+|+||||++++|++.++
T Consensus 83 igI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 83 ISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 66899999999999999999887
No 177
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.85 E-value=0.0091 Score=56.84 Aligned_cols=36 Identities=36% Similarity=0.537 Sum_probs=28.5
Q ss_pred cccce--eEEEcCCCCChHHHHHHHHHHhCCcEEEEec
Q 045456 242 VWKRG--YLLFGPPGTGKSSLIAAMANYLKFNIYDMEL 277 (288)
Q Consensus 242 ~~~rg--~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~ 277 (288)
+..+| +.|.||+|||||+|++.||+....+.-.+.+
T Consensus 153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~ 190 (438)
T 2dpy_A 153 TVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGL 190 (438)
T ss_dssp CCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEE
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEE
Confidence 44455 7799999999999999999999776544433
No 178
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.84 E-value=0.0098 Score=56.59 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=30.5
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh----CCcEEEEecC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL----KFNIYDMELT 278 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~~~ 278 (288)
|++...-+++.||||+|||+++..+|..+ |.+++.+++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 45444448899999999999999988754 5688888765
No 179
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.83 E-value=0.0053 Score=60.48 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=29.1
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC----CcEEEEecCC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK----FNIYDMELTS 279 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~----~~i~~l~~~~ 279 (288)
-++|.|+||+||||++++++..|+ .+++.++...
T Consensus 398 ~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 398 TIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred EEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 377899999999999999999987 7888887543
No 180
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.82 E-value=0.0074 Score=61.74 Aligned_cols=23 Identities=43% Similarity=0.609 Sum_probs=19.3
Q ss_pred eeEEEcCCCCChHHHHHHHHHHh
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l 268 (288)
-.++.||||||||+++..++..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999888777654
No 181
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.80 E-value=0.0096 Score=56.63 Aligned_cols=36 Identities=19% Similarity=0.351 Sum_probs=30.1
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHh----CCcEEEEecCC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYL----KFNIYDMELTS 279 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~~~~ 279 (288)
++.+++.|++|+||||++..+|..+ |..+..+++.-
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 4568889999999999999999776 77888887764
No 182
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.80 E-value=0.0091 Score=55.08 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=28.1
Q ss_pred cccce--eEEEcCCCCChHHHHHHHHHHhCCcEEEEe
Q 045456 242 VWKRG--YLLFGPPGTGKSSLIAAMANYLKFNIYDME 276 (288)
Q Consensus 242 ~~~rg--~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (288)
+..+| +.|.||+|+|||+|++.|++.+..+...+.
T Consensus 67 ~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~ 103 (347)
T 2obl_A 67 TCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLA 103 (347)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEE
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 34445 779999999999999999999987655443
No 183
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.79 E-value=0.0064 Score=55.09 Aligned_cols=25 Identities=36% Similarity=0.628 Sum_probs=21.9
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
.-+.|.||+|+||||+++.||..+.
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3477899999999999999998873
No 184
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.78 E-value=0.0063 Score=49.86 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=21.6
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHh
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
..-+++.|++|+|||+++.++++.-
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998753
No 185
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.75 E-value=0.0085 Score=52.03 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=23.4
Q ss_pred eEEEcCCCCChHHHHHHHHHHh-------CCcEEEEecC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYL-------KFNIYDMELT 278 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l-------~~~i~~l~~~ 278 (288)
+.|.||+|+||||+++.+++.+ |.+++...-+
T Consensus 28 I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep 66 (227)
T 3v9p_A 28 ITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREP 66 (227)
T ss_dssp EEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCC
Confidence 6688999999999999999988 6777655433
No 186
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.74 E-value=0.011 Score=56.04 Aligned_cols=39 Identities=13% Similarity=0.057 Sum_probs=30.5
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh----CCcEEEEecC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL----KFNIYDMELT 278 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~~~ 278 (288)
|++...-+++.||||+|||+++..+|... |.++..+++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 55544448899999999999998888653 5688888775
No 187
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.73 E-value=0.0085 Score=58.13 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=27.9
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEec
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMEL 277 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~ 277 (288)
++-+++.|+||+||||++..+|..+ |..+..++.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 3458899999999999999999776 677777765
No 188
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.71 E-value=0.0027 Score=55.68 Aligned_cols=28 Identities=14% Similarity=0.303 Sum_probs=23.6
Q ss_pred eeEEEcCCCCChHHHHHHHHHHh-CCcEE
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYL-KFNIY 273 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l-~~~i~ 273 (288)
-+.|.|++|+||||+++.+|+.+ +..++
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 36789999999999999999999 54443
No 189
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=95.70 E-value=0.016 Score=56.46 Aligned_cols=63 Identities=19% Similarity=0.112 Sum_probs=40.1
Q ss_pred CCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh-----CC--cEEEEecC
Q 045456 206 PATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL-----KF--NIYDMELT 278 (288)
Q Consensus 206 p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~--~i~~l~~~ 278 (288)
|.....++|-++..+.|.+.+.. . ..-.+-++++||+|+|||++|..+++.. .+ .++.++++
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~----~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~ 188 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSK----L-------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVG 188 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTT----S-------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEE
T ss_pred CCCCCeecccHHHHHHHHHHHhc----c-------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECC
Confidence 33445677877776666654431 0 1123458899999999999999987532 22 36666655
Q ss_pred C
Q 045456 279 S 279 (288)
Q Consensus 279 ~ 279 (288)
.
T Consensus 189 ~ 189 (591)
T 1z6t_A 189 K 189 (591)
T ss_dssp S
T ss_pred C
Confidence 4
No 190
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.69 E-value=0.007 Score=58.81 Aligned_cols=25 Identities=12% Similarity=0.041 Sum_probs=23.1
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
.+.|.|++||||||+++++|+.|+.
T Consensus 397 ~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 397 SIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred EEEecccCCCCHHHHHHHHHHHHHH
Confidence 4778999999999999999999985
No 191
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.63 E-value=0.01 Score=68.39 Aligned_cols=40 Identities=25% Similarity=0.305 Sum_probs=35.3
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecCCCCCc
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELTSVYCN 283 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~~~~~~ 283 (288)
..|..+.||+|||||.+++.+|+.+|.+++.+++++-.+-
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~ 643 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL 643 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH
Confidence 4467899999999999999999999999999999876543
No 192
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.61 E-value=0.0033 Score=60.19 Aligned_cols=27 Identities=26% Similarity=0.515 Sum_probs=23.5
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
.-++|.|+||+|||++++.+|..++.+
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~~~ 66 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLNFI 66 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 358899999999999999999987643
No 193
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.61 E-value=0.008 Score=54.62 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=21.0
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+.|.||+|+||||++++|++.+.
T Consensus 93 vgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 93 IGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHHhhcc
Confidence 56899999999999999999874
No 194
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.61 E-value=0.0068 Score=57.62 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=27.5
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELT 278 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 278 (288)
+-+++.||||+||||++..+|..+ |..+..+++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 458899999999999999999876 4566666553
No 195
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.61 E-value=0.0059 Score=52.18 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=20.1
Q ss_pred eeEEEcCCCCChHHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (288)
-+.|.||+|+|||||+++|++.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3778999999999999999986
No 196
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.58 E-value=0.012 Score=53.06 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=27.8
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELT 278 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 278 (288)
+-+++.||+|+||||++..+|..+ |..+..++..
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 347789999999999999999877 6677777654
No 197
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.58 E-value=0.0058 Score=56.38 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=23.8
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
.-+.+.||+|+|||||+++|++.+..+
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 347899999999999999999998754
No 198
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.58 E-value=0.0041 Score=53.67 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=22.0
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
+.|.||+|+|||||+++|++.+...
T Consensus 33 ~~iiG~nGsGKSTLl~~l~Gl~~p~ 57 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLYILGLLDAPT 57 (224)
T ss_dssp EEEEECTTSCHHHHHHHHTTSSCCS
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC
Confidence 6799999999999999999887543
No 199
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.57 E-value=0.0053 Score=53.68 Aligned_cols=27 Identities=33% Similarity=0.582 Sum_probs=23.1
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
.-+.|.||+|+|||||.++|++.+...
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~ 51 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKPD 51 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 456799999999999999999987543
No 200
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.55 E-value=0.0065 Score=50.88 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=21.7
Q ss_pred cceeEEEcCCCCChHHHHHHHHHH
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~ 267 (288)
.+|+||.||+|+|||++|.++...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 469999999999999999998865
No 201
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.52 E-value=0.011 Score=58.62 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=20.2
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
+-+++.||||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 458899999999999988877654
No 202
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.51 E-value=0.022 Score=52.11 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=20.3
Q ss_pred eEEEcCCCCChHHHHHHHHHHh
Q 045456 247 YLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l 268 (288)
+.|.||||+||||++++|++.+
T Consensus 58 v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 58 VGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6689999999999999999876
No 203
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.51 E-value=0.005 Score=53.52 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=22.2
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
+.|.||+|+|||||.++|++.+...
T Consensus 34 ~~iiG~nGsGKSTLl~~l~Gl~~p~ 58 (235)
T 3tif_A 34 VSIMGPSGSGKSTMLNIIGCLDKPT 58 (235)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCC
Confidence 7799999999999999999887543
No 204
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.49 E-value=0.0054 Score=57.00 Aligned_cols=25 Identities=24% Similarity=0.620 Sum_probs=22.1
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
+.|.||+|||||||.++||+.+.-.
T Consensus 33 ~~llGpsGsGKSTLLr~iaGl~~p~ 57 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAGFEQPD 57 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHTSSCCS
T ss_pred EEEECCCCchHHHHHHHHhcCCCCC
Confidence 6789999999999999999987543
No 205
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.48 E-value=0.0051 Score=53.55 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=21.2
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++|++.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 377999999999999999998763
No 206
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.46 E-value=0.017 Score=53.19 Aligned_cols=39 Identities=21% Similarity=0.146 Sum_probs=31.0
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELT 278 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 278 (288)
|+....-+++.|+||+|||+++..+|..+ |.++..+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 55444448899999999999999998764 7888888775
No 207
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.42 E-value=0.014 Score=55.50 Aligned_cols=40 Identities=18% Similarity=0.151 Sum_probs=31.0
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~ 279 (288)
|++...-+++.|+||+|||+++..+|... |.++..+++..
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm 235 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 235 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 44433348899999999999998888665 67888887763
No 208
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.40 E-value=0.0057 Score=54.12 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=22.1
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
+.|.||+|+|||||+++|++.+...
T Consensus 35 ~~liG~nGsGKSTLlk~l~Gl~~p~ 59 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFLRCINFLEKPS 59 (262)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC
Confidence 6799999999999999999987643
No 209
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.38 E-value=0.0067 Score=56.80 Aligned_cols=25 Identities=32% Similarity=0.622 Sum_probs=22.2
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
+.|.||+|||||||.++||+.+...
T Consensus 32 ~~llGpsGsGKSTLLr~iaGl~~p~ 56 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIAGLETIT 56 (381)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred EEEEcCCCchHHHHHHHHHcCCCCC
Confidence 6699999999999999999987643
No 210
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.38 E-value=0.011 Score=60.50 Aligned_cols=33 Identities=36% Similarity=0.409 Sum_probs=23.5
Q ss_pred eeEEEcCCCCChHHHHHHHHHHh----CCcEEEEecC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYL----KFNIYDMELT 278 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~~~ 278 (288)
-.++.||||||||+++..++..+ +..+..+..+
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~t 413 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPS 413 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCc
Confidence 47899999999999877666543 4556555443
No 211
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.33 E-value=0.0072 Score=56.20 Aligned_cols=25 Identities=40% Similarity=0.673 Sum_probs=22.1
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
+.|.||+|||||||.++||+.+...
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~~p~ 56 (362)
T 2it1_A 32 MALLGPSGSGKSTLLYTIAGIYKPT 56 (362)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred EEEECCCCchHHHHHHHHhcCCCCC
Confidence 6689999999999999999987543
No 212
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.33 E-value=0.0086 Score=49.54 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=20.6
Q ss_pred eeEEEcCCCCChHHHHHHHHHHh
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l 268 (288)
-+.|.||+|+|||||++++++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 213
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.32 E-value=0.0093 Score=53.72 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=28.2
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHh----CCcEEEEecCC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYL----KFNIYDMELTS 279 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~~~~ 279 (288)
++-++|.||+|+||||++..+|..+ |..+..++...
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 3457899999999999999999765 55677766543
No 214
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.32 E-value=0.012 Score=56.68 Aligned_cols=40 Identities=13% Similarity=-0.037 Sum_probs=30.6
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh----CCcEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL----KFNIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~~~~ 279 (288)
|++...-+++.||||+|||+++..+|..+ |.++..+++..
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~ 281 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE 281 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 44434448899999999999999988765 56788887754
No 215
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.32 E-value=0.0058 Score=53.81 Aligned_cols=25 Identities=44% Similarity=0.857 Sum_probs=22.1
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
+.|.||+|+|||||.++|++.+...
T Consensus 36 ~~liG~nGsGKSTLlk~l~Gl~~p~ 60 (257)
T 1g6h_A 36 TLIIGPNGSGKSTLINVITGFLKAD 60 (257)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC
Confidence 6799999999999999999887543
No 216
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.31 E-value=0.011 Score=50.79 Aligned_cols=25 Identities=36% Similarity=0.656 Sum_probs=22.1
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
+.|.||+|+|||||.++|++.+...
T Consensus 38 ~~iiG~NGsGKSTLlk~l~Gl~~p~ 62 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLLKTISTYLKPL 62 (214)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC
Confidence 7799999999999999999887543
No 217
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.29 E-value=0.0067 Score=52.49 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.0
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
-+.|.||.|+|||||.++|++.+..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~p 60 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELEP 60 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcC
Confidence 3779999999999999999988753
No 218
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.29 E-value=0.027 Score=53.46 Aligned_cols=58 Identities=17% Similarity=0.150 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEec
Q 045456 218 MKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMEL 277 (288)
Q Consensus 218 ~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~ 277 (288)
+.+.+.+.+...+.... ..+....++.+++.||+|+||||++..+|..+ |..+..+++
T Consensus 74 ~~~~v~~~L~~~~~~~~--~~i~l~~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 74 ILATVYEALKEALGGEA--RLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp HHHHHHHHHHHHTTSSC--CCCCCCSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred HHHHHHHHHHHHhCCCc--ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 44445555554443221 11122223457788999999999999999887 566776665
No 219
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.28 E-value=0.0075 Score=56.01 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=22.0
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
+.|.||+|||||||.++||+.+...
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~~p~ 56 (359)
T 2yyz_A 32 VALLGPSGCGKTTTLLMLAGIYKPT 56 (359)
T ss_dssp EEEECSTTSSHHHHHHHHHTSSCCS
T ss_pred EEEEcCCCchHHHHHHHHHCCCCCC
Confidence 6689999999999999999987543
No 220
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.27 E-value=0.01 Score=52.15 Aligned_cols=29 Identities=38% Similarity=0.539 Sum_probs=24.0
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCCcEEEEe
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKFNIYDME 276 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l~ 276 (288)
+.|.||+|+|||||.++|++.+... =.+.
T Consensus 29 ~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~ 57 (249)
T 2qi9_C 29 LHLVGPNGAGKSTLLARMAGMTSGK-GSIQ 57 (249)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCE-EEEE
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCC-eEEE
Confidence 6799999999999999999987654 4443
No 221
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.26 E-value=0.012 Score=54.43 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=22.1
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
+.|.||+|||||||.++||+.+...
T Consensus 44 ~~llGpnGsGKSTLLr~iaGl~~p~ 68 (355)
T 1z47_A 44 VGLLGPSGSGKTTILRLIAGLERPT 68 (355)
T ss_dssp EEEECSTTSSHHHHHHHHHTSSCCS
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCC
Confidence 6799999999999999999887543
No 222
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.26 E-value=0.0077 Score=56.19 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=22.1
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
+.|.||+|||||||.++||+.+...
T Consensus 40 ~~llGpnGsGKSTLLr~iaGl~~p~ 64 (372)
T 1v43_A 40 LVLLGPSGCGKTTTLRMIAGLEEPT 64 (372)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred EEEECCCCChHHHHHHHHHcCCCCC
Confidence 6699999999999999999987543
No 223
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.26 E-value=0.0067 Score=54.19 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=22.1
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
+.|.||+|+|||||+++|++.+...
T Consensus 37 ~~iiGpnGsGKSTLl~~l~Gl~~p~ 61 (275)
T 3gfo_A 37 TAILGGNGVGKSTLFQNFNGILKPS 61 (275)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCC
Confidence 7799999999999999999987543
No 224
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.25 E-value=0.007 Score=52.80 Aligned_cols=23 Identities=26% Similarity=0.650 Sum_probs=21.2
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+.|.||+|+|||||+++|++.+.
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 31 IAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCCCHHHHHHHHhcCCC
Confidence 77999999999999999998774
No 225
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.22 E-value=0.0066 Score=52.91 Aligned_cols=25 Identities=28% Similarity=0.558 Sum_probs=22.0
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
+.|.||+|+|||||.++|++.+...
T Consensus 35 ~~l~G~nGsGKSTLl~~l~Gl~~p~ 59 (240)
T 1ji0_A 35 VTLIGANGAGKTTTLSAIAGLVRAQ 59 (240)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC
Confidence 6799999999999999999887543
No 226
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.21 E-value=0.007 Score=53.05 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=22.2
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
+.|.||+|+|||||+++|++.+...
T Consensus 38 ~~i~G~nGsGKSTLl~~l~Gl~~p~ 62 (247)
T 2ff7_A 38 IGIVGRSGSGKSTLTKLIQRFYIPE 62 (247)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC
Confidence 7799999999999999999987543
No 227
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.20 E-value=0.017 Score=53.08 Aligned_cols=32 Identities=28% Similarity=0.380 Sum_probs=26.0
Q ss_pred eeEEEcCCCCChHHHHHHHHHHh---CCcEEEEec
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYL---KFNIYDMEL 277 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~ 277 (288)
-+.+.|+||+||||++.+++..+ |..+..++.
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 47899999999999999999886 566555544
No 228
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.19 E-value=0.0091 Score=52.32 Aligned_cols=21 Identities=43% Similarity=0.593 Sum_probs=19.8
Q ss_pred eEEEcCCCCChHHHHHHHHHH
Q 045456 247 YLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~ 267 (288)
+.|.||+|+|||||+++|++.
T Consensus 32 ~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 32 HALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEECSTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 779999999999999999986
No 229
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.17 E-value=0.008 Score=53.31 Aligned_cols=25 Identities=28% Similarity=0.677 Sum_probs=22.1
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
+.|.||+|+|||||+++|++.+...
T Consensus 53 ~~liG~NGsGKSTLlk~l~Gl~~p~ 77 (263)
T 2olj_A 53 VVVIGPSGSGKSTFLRCLNLLEDFD 77 (263)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEcCCCCcHHHHHHHHHcCCCCC
Confidence 7799999999999999999987543
No 230
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.17 E-value=0.0068 Score=59.43 Aligned_cols=33 Identities=27% Similarity=0.287 Sum_probs=26.6
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC----CcEEEEecCC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK----FNIYDMELTS 279 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~----~~i~~l~~~~ 279 (288)
+.|.||+|+||||++++||+.++ ..+..++...
T Consensus 372 I~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 372 VFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDI 408 (552)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred EEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence 77999999999999999999986 3455555433
No 231
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.17 E-value=0.014 Score=54.46 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=22.0
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
+.|.||+|||||||.++||+.+...
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~~p~ 56 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIAGLEEPS 56 (372)
T ss_dssp EEEECSTTSSHHHHHHHHHTSSCCS
T ss_pred EEEECCCCcHHHHHHHHHHcCCCCC
Confidence 6799999999999999999887543
No 232
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.16 E-value=0.017 Score=63.39 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=33.6
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSVY 281 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~ 281 (288)
|++....++|+||||+|||++|..+|..+ +.++..+++.+..
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~ 772 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 772 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 46666679999999999999999998775 4578888876543
No 233
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.14 E-value=0.016 Score=64.34 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=35.0
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCCCCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTSVYC 282 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~~~~ 282 (288)
|++..+.++++||||||||+++.+++.+. |.+.+.+++.+..+
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~ 1122 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 1122 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCC
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHH
Confidence 46667779999999999999999988653 78888888876543
No 234
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.13 E-value=0.0073 Score=54.00 Aligned_cols=25 Identities=28% Similarity=0.666 Sum_probs=22.2
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
+.|.||+|+|||||.++|++.+...
T Consensus 50 ~~liG~NGsGKSTLlk~l~Gl~~p~ 74 (279)
T 2ihy_A 50 WILYGLNGAGKTTLLNILNAYEPAT 74 (279)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCC
Confidence 7799999999999999999987543
No 235
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.13 E-value=0.011 Score=52.49 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=20.3
Q ss_pred eEEEcCCCCChHHHHHHHHHHh
Q 045456 247 YLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l 268 (288)
+.|.||+|+|||||+++|++.+
T Consensus 49 ~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 49 HAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp EEEECCTTSSHHHHHHHHHTCT
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7799999999999999999864
No 236
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.12 E-value=0.0082 Score=53.36 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=22.2
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
+.|.||+|+|||||+++|++.+...
T Consensus 48 ~~i~G~nGsGKSTLlk~l~Gl~~p~ 72 (271)
T 2ixe_A 48 TALVGPNGSGKSTVAALLQNLYQPT 72 (271)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC
Confidence 7799999999999999999987543
No 237
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.11 E-value=0.0079 Score=53.10 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=21.7
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++|++.+.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 377999999999999999998775
No 238
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.10 E-value=0.0077 Score=53.43 Aligned_cols=24 Identities=38% Similarity=0.728 Sum_probs=21.4
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
+.|.||+|+|||||+++|++.+..
T Consensus 40 ~~liG~nGsGKSTLl~~l~Gl~~p 63 (266)
T 4g1u_C 40 VAIIGPNGAGKSTLLRLLTGYLSP 63 (266)
T ss_dssp EEEECCTTSCHHHHHHHHTSSSCC
T ss_pred EEEECCCCCcHHHHHHHHhcCCCC
Confidence 679999999999999999987743
No 239
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.04 E-value=0.02 Score=55.44 Aligned_cols=39 Identities=18% Similarity=0.132 Sum_probs=28.4
Q ss_pred CcccceeEEEcCCCCChHHHHHH--HHHHh--CCcEEEEecCC
Q 045456 241 KVWKRGYLLFGPPGTGKSSLIAA--MANYL--KFNIYDMELTS 279 (288)
Q Consensus 241 ~~~~rg~LL~GPpGtGKTsla~a--iA~~l--~~~i~~l~~~~ 279 (288)
++...-++|.||||||||+|+++ +++.+ +-..+.++..+
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 34444588999999999999999 55554 44566666654
No 240
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.03 E-value=0.0082 Score=55.53 Aligned_cols=33 Identities=27% Similarity=0.572 Sum_probs=26.4
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCC--cEEEEe
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKF--NIYDME 276 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~--~i~~l~ 276 (288)
..-+++.||+|+||||++++|++.+.. -.+.++
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence 345889999999999999999998753 355555
No 241
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.00 E-value=0.0065 Score=56.15 Aligned_cols=25 Identities=24% Similarity=0.683 Sum_probs=22.1
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
+.|.||+|||||||.++||+.+...
T Consensus 29 ~~llGpnGsGKSTLLr~iaGl~~p~ 53 (348)
T 3d31_A 29 FVILGPTGAGKTLFLELIAGFHVPD 53 (348)
T ss_dssp EEEECCCTHHHHHHHHHHHTSSCCS
T ss_pred EEEECCCCccHHHHHHHHHcCCCCC
Confidence 6789999999999999999887543
No 242
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.98 E-value=0.0088 Score=52.61 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.5
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
+.|.||+|+|||||.++|++.+..
T Consensus 34 ~~l~G~nGsGKSTLl~~l~Gl~~p 57 (253)
T 2nq2_C 34 LAVLGQNGCGKSTLLDLLLGIHRP 57 (253)
T ss_dssp EEEECCSSSSHHHHHHHHTTSSCC
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 779999999999999999987653
No 243
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.98 E-value=0.0098 Score=52.49 Aligned_cols=25 Identities=28% Similarity=0.618 Sum_probs=22.1
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
+.|.||+|+|||||.++|++.+...
T Consensus 44 ~~l~G~NGsGKSTLlk~l~Gl~~p~ 68 (256)
T 1vpl_A 44 FGLIGPNGAGKTTTLRIISTLIKPS 68 (256)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC
Confidence 7799999999999999999887543
No 244
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.93 E-value=0.0096 Score=52.72 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=21.6
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
+.|.||+|+|||||+++|++.+..
T Consensus 36 ~~liG~nGsGKSTLl~~i~Gl~~p 59 (266)
T 2yz2_A 36 LLVAGNTGSGKSTLLQIVAGLIEP 59 (266)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCCC
Confidence 679999999999999999987754
No 245
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.91 E-value=0.0094 Score=55.95 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=21.0
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+.|.||+||||||+.++||+.+.
T Consensus 50 ~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 50 VGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp EEEEESTTSSHHHHHHHHHTCSE
T ss_pred EEEECCCCChHHHHHHHHhCCCC
Confidence 77999999999999999998764
No 246
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.86 E-value=0.0096 Score=52.76 Aligned_cols=22 Identities=36% Similarity=0.868 Sum_probs=20.7
Q ss_pred eEEEcCCCCChHHHHHHHHHHh
Q 045456 247 YLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l 268 (288)
+.|.||+|+|||||.++|++.+
T Consensus 33 ~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 33 VIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7799999999999999999987
No 247
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.85 E-value=0.0076 Score=55.12 Aligned_cols=35 Identities=23% Similarity=0.485 Sum_probs=27.5
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCC--cEEEEecC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKF--NIYDMELT 278 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~--~i~~l~~~ 278 (288)
...+++.||+|+||||++++|++.+.. -.+.++..
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~ 207 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDT 207 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCe
Confidence 345889999999999999999998753 35555543
No 248
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.85 E-value=0.054 Score=49.73 Aligned_cols=22 Identities=45% Similarity=0.738 Sum_probs=20.2
Q ss_pred eEEEcCCCCChHHHHHHHHHHh
Q 045456 247 YLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l 268 (288)
+.|.||||+|||||..++++.+
T Consensus 77 v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 77 VGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999865
No 249
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=94.85 E-value=0.027 Score=48.63 Aligned_cols=33 Identities=24% Similarity=0.181 Sum_probs=28.4
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhCCcEEEEecC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLKFNIYDMELT 278 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~ 278 (288)
.+++.||+|+|||.++.+++..++.+++.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 488999999999999999999988887777544
No 250
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.83 E-value=0.028 Score=52.87 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.9
Q ss_pred eeEEEcCCCCChHHHHHHHHHHh
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l 268 (288)
-++++||||||||++++.||+..
T Consensus 176 r~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 176 RGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEecCCCCChhHHHHHHHHHH
Confidence 38999999999999999999865
No 251
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.82 E-value=0.049 Score=48.87 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=26.4
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEec
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMEL 277 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~ 277 (288)
+-+.+.||+|+||||++..+|..+ +..+..++.
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 346788999999999999999876 556666654
No 252
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.79 E-value=0.015 Score=50.67 Aligned_cols=30 Identities=27% Similarity=0.397 Sum_probs=24.1
Q ss_pred eEEEcCCCCChHHHHHHHHHHh---CCc-EEEEe
Q 045456 247 YLLFGPPGTGKSSLIAAMANYL---KFN-IYDME 276 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l---~~~-i~~l~ 276 (288)
+.+.||+|+||||+++.++..+ +.+ +....
T Consensus 30 i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~r 63 (236)
T 3lv8_A 30 IVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTR 63 (236)
T ss_dssp EEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeec
Confidence 6789999999999999999887 455 44443
No 253
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.78 E-value=0.015 Score=56.39 Aligned_cols=39 Identities=23% Similarity=0.208 Sum_probs=28.0
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELT 278 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 278 (288)
|++...-+++.||||+|||+|++.+|..+ |.+++.+...
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e 318 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYE 318 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 44444448899999999999999999765 3445445443
No 254
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.72 E-value=0.0066 Score=56.21 Aligned_cols=24 Identities=25% Similarity=0.542 Sum_probs=21.6
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
+.|.||+|||||||.++||+.+..
T Consensus 34 ~~llGpnGsGKSTLLr~iaGl~~p 57 (353)
T 1oxx_K 34 FGILGPSGAGKTTFMRIIAGLDVP 57 (353)
T ss_dssp EEEECSCHHHHHHHHHHHHTSSCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCCC
Confidence 669999999999999999988754
No 255
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.57 E-value=0.012 Score=52.87 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=21.0
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+.|.||.|+|||||.++|++.+.
T Consensus 67 ~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 67 LAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp EEEEESTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 77999999999999999998764
No 256
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.52 E-value=0.019 Score=46.16 Aligned_cols=22 Identities=45% Similarity=0.640 Sum_probs=19.6
Q ss_pred eEEEcCCCCChHHHHHHHHHHh
Q 045456 247 YLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l 268 (288)
.+++||.|+|||++..||.-.+
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999998655
No 257
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.51 E-value=0.016 Score=55.45 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.8
Q ss_pred eEEEcCCCCChHHHHHHHHHHh
Q 045456 247 YLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l 268 (288)
+.|.||+|+|||||+++|++.+
T Consensus 141 v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 141 VVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp EEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhCcc
Confidence 8899999999999999999986
No 258
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.45 E-value=0.023 Score=47.72 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=22.1
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
.-+.+.|+||+||||++.+++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4688999999999999999998863
No 259
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.44 E-value=0.023 Score=49.21 Aligned_cols=28 Identities=29% Similarity=0.311 Sum_probs=23.7
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCC----cEEE
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKF----NIYD 274 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~----~i~~ 274 (288)
+.+.|++|+||||+++.+++.++. +++.
T Consensus 24 i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 24 ITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 668899999999999999998755 6555
No 260
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.40 E-value=0.039 Score=52.07 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=19.8
Q ss_pred eEEEcCCCCChHHHHHHHHHHh
Q 045456 247 YLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l 268 (288)
+.|.||+|+||||++++|++..
T Consensus 72 valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 72 VAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 6689999999999999999854
No 261
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.34 E-value=0.024 Score=46.36 Aligned_cols=23 Identities=26% Similarity=0.509 Sum_probs=20.4
Q ss_pred ceeEEEcCCCCChHHHHHHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (288)
-.+++.|++|+|||+|+.++.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 262
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.29 E-value=0.025 Score=46.03 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.1
Q ss_pred eeEEEcCCCCChHHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (288)
.+++.|++|+|||+++.++++.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5889999999999999999865
No 263
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=94.27 E-value=0.055 Score=56.59 Aligned_cols=64 Identities=16% Similarity=0.043 Sum_probs=43.3
Q ss_pred CCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh-------CCcEEEEec
Q 045456 205 HPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL-------KFNIYDMEL 277 (288)
Q Consensus 205 ~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-------~~~i~~l~~ 277 (288)
.|.....++|-++..++|.+.+.. . -...+-+.++|++|.|||+||+.+++.. ...++.+++
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~----~-------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~ 187 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWK----L-------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSI 187 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHT----T-------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEEC
T ss_pred CCCCCceeccHHHHHHHHHHHHhh----c-------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEE
Confidence 455566788888777777665431 0 1123457899999999999999988752 223556776
Q ss_pred CC
Q 045456 278 TS 279 (288)
Q Consensus 278 ~~ 279 (288)
+.
T Consensus 188 ~~ 189 (1249)
T 3sfz_A 188 GK 189 (1249)
T ss_dssp CS
T ss_pred CC
Confidence 55
No 264
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.26 E-value=0.026 Score=45.41 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.5
Q ss_pred ceeEEEcCCCCChHHHHHHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (288)
..+++.|++|+|||+|+.++.+.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 45899999999999999999864
No 265
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.23 E-value=0.02 Score=53.23 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.0
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
+-|.||+|+|||||+++|++.+.-.
T Consensus 57 ~~IiGpnGaGKSTLlr~i~GL~~p~ 81 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNLLERPT 81 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred EEEEcCCCchHHHHHHHHhcCCCCC
Confidence 6799999999999999999877543
No 266
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.19 E-value=0.022 Score=55.65 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=26.2
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC---CcEEEEec
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK---FNIYDMEL 277 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~---~~i~~l~~ 277 (288)
-++|.|+||+||||+++++++.++ .+++.++.
T Consensus 374 ~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~ 408 (546)
T 2gks_A 374 CVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDG 408 (546)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECH
T ss_pred EEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECc
Confidence 377899999999999999999875 45666654
No 267
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.17 E-value=0.0088 Score=49.73 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=19.5
Q ss_pred eeEEEcCCCCChHHHHHHHHHHh
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l 268 (288)
-+.|.||+|+|||||++++++..
T Consensus 28 ~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 28 EVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999988644
No 268
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.16 E-value=0.024 Score=48.63 Aligned_cols=28 Identities=29% Similarity=0.504 Sum_probs=23.1
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCCcEEEE
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKFNIYDM 275 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (288)
+.|.||.|+||||+++.|++. +-.+...
T Consensus 23 i~i~G~~GsGKSTl~~~L~~~-~g~v~~~ 50 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNHFEKY-KNDICLL 50 (230)
T ss_dssp EEEECSTTSCHHHHHHTTGGG-TTTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHhc-cCCeEEE
Confidence 568999999999999999988 5555544
No 269
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.14 E-value=0.041 Score=46.28 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=21.4
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
.-+++.|++|+|||+++..++..+
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 457888999999999999999876
No 270
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.10 E-value=0.019 Score=51.53 Aligned_cols=26 Identities=38% Similarity=0.437 Sum_probs=22.3
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
-+.|.||+|+|||||+++|++.....
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~~~ 196 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLKLR 196 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCCCC
T ss_pred eEEEECCCCCcHHHHHHHhccccccc
Confidence 36789999999999999999877543
No 271
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.10 E-value=0.032 Score=45.83 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.5
Q ss_pred ceeEEEcCCCCChHHHHHHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (288)
-.+++.|++|+|||+|+.++.+.
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999864
No 272
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.08 E-value=0.022 Score=46.50 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.3
Q ss_pred ceeEEEcCCCCChHHHHHHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (288)
.-+++.|++|+|||+++.++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999854
No 273
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.07 E-value=0.029 Score=45.72 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=20.7
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
-.+++.|++|+|||+|+.++.+.-
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999998643
No 274
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.03 E-value=0.03 Score=45.13 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=20.9
Q ss_pred cceeEEEcCCCCChHHHHHHHHHH
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~ 267 (288)
.--+++.|++|+|||+|+.++.+.
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999999864
No 275
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=94.01 E-value=0.0099 Score=51.61 Aligned_cols=22 Identities=41% Similarity=0.495 Sum_probs=19.8
Q ss_pred EEEcCCCCChHHHHHHHHHHhC
Q 045456 248 LLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 248 LL~GPpGtGKTsla~aiA~~l~ 269 (288)
.+.||+||||||+..+|+..+.
T Consensus 31 ~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 31 TLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhcccc
Confidence 4679999999999999999875
No 276
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.99 E-value=0.047 Score=49.87 Aligned_cols=30 Identities=27% Similarity=0.473 Sum_probs=23.5
Q ss_pred eeEEEcCCCCChHHHHHHHHHHh---CCcEEEE
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYL---KFNIYDM 275 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l---~~~i~~l 275 (288)
-+.+.||||+||||++.+++..+ +..+..+
T Consensus 58 ~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~ 90 (341)
T 2p67_A 58 RLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVI 90 (341)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 36789999999999999999875 4444433
No 277
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.99 E-value=0.028 Score=46.21 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=19.6
Q ss_pred eeEEEcCCCCChHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMAN 266 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~ 266 (288)
-+++.|+||+|||+++.++++
T Consensus 25 ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999987
No 278
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.99 E-value=0.031 Score=45.53 Aligned_cols=25 Identities=36% Similarity=0.464 Sum_probs=21.8
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHh
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
.--+++.|++|+|||+|+.++.+.-
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4469999999999999999998754
No 279
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.98 E-value=0.014 Score=53.00 Aligned_cols=26 Identities=27% Similarity=0.631 Sum_probs=22.7
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
-+.|.||+|+|||||+++|++.+...
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~~p~ 107 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFYDIS 107 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCchHHHHHHHHHcCCCCC
Confidence 37799999999999999999987543
No 280
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=93.94 E-value=0.079 Score=51.39 Aligned_cols=43 Identities=21% Similarity=0.246 Sum_probs=31.6
Q ss_pred cChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHH
Q 045456 214 MDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMAN 266 (288)
Q Consensus 214 ~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~ 266 (288)
|-++.+++|.+.+..- +....+.+.++|++|.|||+||+.+++
T Consensus 132 GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 132 IREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 7777777777765321 111235688999999999999999997
No 281
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.90 E-value=0.023 Score=52.69 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.5
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||||+|||||+.+|+..+.
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 477999999999999999998765
No 282
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.88 E-value=0.034 Score=45.53 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.6
Q ss_pred eeEEEcCCCCChHHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (288)
-+++.|++|+|||+|+.++.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4899999999999999998764
No 283
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.88 E-value=0.035 Score=45.47 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=19.3
Q ss_pred eeEEEcCCCCChHHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (288)
-+++.|++|+|||+|+..+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999887764
No 284
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.87 E-value=0.025 Score=45.85 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.4
Q ss_pred ceeEEEcCCCCChHHHHHHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (288)
.-+++.|++|+|||+++.++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999865
No 285
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.87 E-value=0.04 Score=45.67 Aligned_cols=21 Identities=19% Similarity=0.509 Sum_probs=19.0
Q ss_pred eeEEEcCCCCChHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMAN 266 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~ 266 (288)
-+++.|+||+|||+++.++.+
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999874
No 286
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.85 E-value=0.032 Score=45.76 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=19.9
Q ss_pred eeEEEcCCCCChHHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (288)
.+++.|++|+|||+|+.++.+.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 287
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.85 E-value=0.033 Score=45.54 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.8
Q ss_pred eeEEEcCCCCChHHHHHHHHHHh
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l 268 (288)
.+++.|++|+|||+|+.++.+.-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 48999999999999999998765
No 288
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.84 E-value=0.04 Score=50.16 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=22.9
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
.+|++|.||+|+|||++|.++... |..
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~ 170 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHR 170 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCc
Confidence 468999999999999999999874 443
No 289
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.82 E-value=0.036 Score=45.19 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=20.1
Q ss_pred ceeEEEcCCCCChHHHHHHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (288)
..+++.|++|+|||+|+.++.+.
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999753
No 290
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.79 E-value=0.036 Score=45.30 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.8
Q ss_pred eeEEEcCCCCChHHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (288)
.+++.|++|+|||+|+.++.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999854
No 291
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.77 E-value=0.036 Score=45.32 Aligned_cols=22 Identities=32% Similarity=0.693 Sum_probs=19.9
Q ss_pred eeEEEcCCCCChHHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (288)
-+++.|++|+|||+|+.++.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 292
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.77 E-value=0.038 Score=45.55 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=20.3
Q ss_pred ceeEEEcCCCCChHHHHHHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (288)
-.+++.|++|+|||+|+.++.+.
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45899999999999999999854
No 293
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.70 E-value=0.037 Score=45.26 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=20.1
Q ss_pred eeEEEcCCCCChHHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (288)
.+++.|++|+|||+|+.++.+.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
No 294
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.69 E-value=0.037 Score=45.75 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.2
Q ss_pred ceeEEEcCCCCChHHHHHHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (288)
--+++.|+||+|||+|+.++.+.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999854
No 295
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.67 E-value=0.036 Score=52.59 Aligned_cols=21 Identities=38% Similarity=0.574 Sum_probs=19.5
Q ss_pred eEEEcCCCCChHHHHHHHHHH
Q 045456 247 YLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~ 267 (288)
+.|.||+|+|||||+++|++.
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 678999999999999999976
No 296
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.61 E-value=0.035 Score=47.56 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=20.8
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
.-++|.|++|+||||++.++.+..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 358999999999999999998643
No 297
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.60 E-value=0.036 Score=45.76 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.4
Q ss_pred ceeEEEcCCCCChHHHHHHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (288)
..+++.|++|+|||+|+.++.+.
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 34899999999999999999864
No 298
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.57 E-value=0.03 Score=45.37 Aligned_cols=24 Identities=17% Similarity=0.390 Sum_probs=20.7
Q ss_pred cceeEEEcCCCCChHHHHHHHHHH
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~ 267 (288)
.-.+++.|+||+|||+++.++.+.
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999998753
No 299
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.55 E-value=0.052 Score=52.32 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=22.1
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
.-+.|.||+|+||||++++|++.+.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 4567999999999999999999874
No 300
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.51 E-value=0.093 Score=48.52 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=28.2
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELT 278 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 278 (288)
...+++.||+|+|||++++.++..+ |..++.++..
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3468999999999999999998764 6677777653
No 301
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=93.51 E-value=0.047 Score=49.64 Aligned_cols=29 Identities=31% Similarity=0.346 Sum_probs=23.3
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHhCCcEE
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYLKFNIY 273 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l~~~i~ 273 (288)
.+|+||.||+|+|||++|.++.. -|..++
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~lv 175 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLFV 175 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEEE
Confidence 56899999999999999988864 455443
No 302
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.46 E-value=0.039 Score=46.16 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=20.1
Q ss_pred eeEEEcCCCCChHHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (288)
-+++.|++|+|||+|+.++++.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 303
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.43 E-value=0.039 Score=49.62 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=20.1
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++|+ .+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hhh
Confidence 36789999999999999999 654
No 304
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=93.42 E-value=0.045 Score=46.20 Aligned_cols=24 Identities=42% Similarity=0.607 Sum_probs=20.9
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
.+++||.|+|||++..||.-.++-
T Consensus 26 ~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 578999999999999999876654
No 305
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.36 E-value=0.047 Score=43.90 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.1
Q ss_pred cceeEEEcCCCCChHHHHHHHHH
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMAN 266 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~ 266 (288)
...+++.|++|+|||+++.++.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34589999999999999999973
No 306
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=93.36 E-value=0.069 Score=44.78 Aligned_cols=62 Identities=15% Similarity=0.128 Sum_probs=33.5
Q ss_pred CCCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCc---ccceeEEEcCCCCChHHHHHHHHHHh
Q 045456 204 DHPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKV---WKRGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 204 ~~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~---~~rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
.+..+|+++...+++.+.+.+. -+..+..++...++ -.+.+++.+|+|+|||..+...+-..
T Consensus 11 ~~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~ 75 (220)
T 1t6n_A 11 IHSSGFRDFLLKPELLRAIVDC---GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 75 (220)
T ss_dssp ---CCSTTSCCCHHHHHHHHHT---TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCHhhcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHh
Confidence 3445788888777776666441 01111111110000 12469999999999998765555443
No 307
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=93.36 E-value=0.25 Score=43.96 Aligned_cols=59 Identities=12% Similarity=0.058 Sum_probs=32.5
Q ss_pred CCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCc----ccceeEEEcCCCCChHHHHHHHHHHh
Q 045456 207 ATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKV----WKRGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 207 ~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~----~~rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
.+|+++...+...+.+.+. -+..+.-+++..++ -.+.+++.+|+|+|||..+...+-.+
T Consensus 6 ~~f~~~~l~~~~~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNK---GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHH---TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CchhhcCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHH
Confidence 4678887777666655431 00011111111111 12578999999999999866554443
No 308
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.36 E-value=0.04 Score=53.72 Aligned_cols=24 Identities=38% Similarity=0.508 Sum_probs=21.3
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
-+.|.||+|+|||||+++|++.+.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 377999999999999999998763
No 309
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.30 E-value=0.044 Score=45.79 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=20.2
Q ss_pred ceeEEEcCCCCChHHHHHHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (288)
-.+++.|++|+|||+|+.++.+.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999998864
No 310
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.26 E-value=0.04 Score=44.83 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.1
Q ss_pred cceeEEEcCCCCChHHHHHHHHHH
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~ 267 (288)
..-+++.|+||+|||+++.++++.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999865
No 311
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.25 E-value=0.04 Score=44.77 Aligned_cols=23 Identities=13% Similarity=0.384 Sum_probs=20.7
Q ss_pred cceeEEEcCCCCChHHHHHHHHH
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMAN 266 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~ 266 (288)
.-.+++.|++|+|||+++.++.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999984
No 312
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.22 E-value=0.047 Score=44.56 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.6
Q ss_pred ceeEEEcCCCCChHHHHHHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (288)
-.+++.|++|+|||+++.++.+.
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999865
No 313
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=93.19 E-value=0.049 Score=52.45 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=22.6
Q ss_pred eeEEEcCCCCChHHHHHHH-HHHhCCcEE
Q 045456 246 GYLLFGPPGTGKSSLIAAM-ANYLKFNIY 273 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~ai-A~~l~~~i~ 273 (288)
.+||.|+||| ||.+++++ ++.+..-+|
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR~~f 268 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPRGVY 268 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSSEEE
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCCeEE
Confidence 4999999999 99999999 776655444
No 314
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.14 E-value=0.053 Score=44.62 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=19.0
Q ss_pred eeEEEcCCCCChHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMAN 266 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~ 266 (288)
-+++.|+||+|||+|+.++.+
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999864
No 315
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.12 E-value=0.05 Score=52.21 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=20.3
Q ss_pred eeEEEcCCCCChHHHHHHHHHHh
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l 268 (288)
-++|+||||+|||+|+..++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 38899999999999999888764
No 316
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.11 E-value=0.049 Score=45.24 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=20.5
Q ss_pred ceeEEEcCCCCChHHHHHHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (288)
..+++.|++|+|||+|+.++.+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 317
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.11 E-value=0.044 Score=45.04 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.2
Q ss_pred eeEEEcCCCCChHHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (288)
.+++.|++|+|||+|+.++.+.
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998743
No 318
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=93.10 E-value=0.074 Score=49.21 Aligned_cols=22 Identities=23% Similarity=0.381 Sum_probs=19.2
Q ss_pred eEEEcCCCCChHHHHHHHHHHh
Q 045456 247 YLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l 268 (288)
+.|.|+||+|||||..++++..
T Consensus 182 V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 7799999999999999998643
No 319
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=93.10 E-value=0.071 Score=44.74 Aligned_cols=60 Identities=15% Similarity=0.180 Sum_probs=32.9
Q ss_pred CCccccccChhhhHHHHHHH-HHHhh-cHHHHHHhCCcccceeEEEcCCCCChHHH-HHHHHHHh
Q 045456 207 ATFDKIAMDPSMKQASIDDL-DRFVK-RRNFYRRVGKVWKRGYLLFGPPGTGKSSL-IAAMANYL 268 (288)
Q Consensus 207 ~~~~~l~~~~~~k~~i~~~l-~~~~~-~~~~~~~~g~~~~rg~LL~GPpGtGKTsl-a~aiA~~l 268 (288)
.+|+++...+...+.+.+.= ..+.. +.+.+..+ --.+.+++.+|+|+|||.. +.++...+
T Consensus 14 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~--~~~~~~lv~~pTGsGKT~~~~~~~l~~l 76 (224)
T 1qde_A 14 YKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPI--IEGHDVLAQAQSGTGKTGTFSIAALQRI 76 (224)
T ss_dssp CCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHH--HTTCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHH--hcCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 57999988777666554310 00000 11111111 1135699999999999987 34444443
No 320
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.07 E-value=0.045 Score=45.61 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=19.7
Q ss_pred eeEEEcCCCCChHHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (288)
.+++.|++|+|||+|+.++.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999853
No 321
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=93.07 E-value=0.038 Score=45.72 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=17.9
Q ss_pred ceeEEEcCCCCChHHH-HHHHHHHh
Q 045456 245 RGYLLFGPPGTGKSSL-IAAMANYL 268 (288)
Q Consensus 245 rg~LL~GPpGtGKTsl-a~aiA~~l 268 (288)
+.+++.+|+|+|||.. +.++...+
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~l 63 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAERL 63 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCEEEECCCCChHHHHHHHHHHHHH
Confidence 5699999999999986 34444443
No 322
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.05 E-value=0.041 Score=45.51 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=19.6
Q ss_pred ceeEEEcCCCCChHHHHHHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (288)
-.+++.|++|+|||+|+.++.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999998743
No 323
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.05 E-value=0.038 Score=44.75 Aligned_cols=22 Identities=14% Similarity=0.353 Sum_probs=19.7
Q ss_pred eeEEEcCCCCChHHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (288)
.+++.|++|+|||+|+.++.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999853
No 324
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.99 E-value=0.11 Score=48.92 Aligned_cols=27 Identities=26% Similarity=0.581 Sum_probs=22.3
Q ss_pred cccce--eEEEcCCCCChHHHHHHHHHHh
Q 045456 242 VWKRG--YLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 242 ~~~rg--~LL~GPpGtGKTsla~aiA~~l 268 (288)
+..+| .+++||||||||+++..||+..
T Consensus 171 PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 171 PIGKGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp CCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred cccCCceEEEecCCCCChhHHHHHHHHHH
Confidence 33444 8999999999999999999864
No 325
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.96 E-value=0.053 Score=44.83 Aligned_cols=22 Identities=18% Similarity=0.397 Sum_probs=20.0
Q ss_pred eeEEEcCCCCChHHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (288)
.+++.|++|+|||+|+.++.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 326
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.95 E-value=0.054 Score=44.90 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=19.6
Q ss_pred eeEEEcCCCCChHHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (288)
-+++.|++|+|||+|+.++.+.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4899999999999999999753
No 327
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=92.84 E-value=0.037 Score=49.71 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=19.1
Q ss_pred eeEEEcCCCCChHHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (288)
.+.|.||+|+|||||+++|++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999998865
No 328
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.83 E-value=0.05 Score=53.34 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=21.3
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+.+.||+|+||||++++|++.+.
T Consensus 372 ~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 372 VALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC
Confidence 77999999999999999998874
No 329
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.80 E-value=0.058 Score=43.98 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=20.9
Q ss_pred cceeEEEcCCCCChHHHHHHHHHH
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~ 267 (288)
..-+++.|++|+|||+|+.++.+.
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999998753
No 330
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.78 E-value=0.048 Score=45.68 Aligned_cols=21 Identities=38% Similarity=0.635 Sum_probs=19.2
Q ss_pred eeEEEcCCCCChHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMAN 266 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~ 266 (288)
.+++.|++|+|||+|+.++.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 588999999999999999975
No 331
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.77 E-value=0.046 Score=45.22 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=18.9
Q ss_pred eeEEEcCCCCChHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMAN 266 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~ 266 (288)
-+++.|+||+|||+|+.++++
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999999863
No 332
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.77 E-value=0.046 Score=46.31 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.0
Q ss_pred ceeEEEcCCCCChHHHHHHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (288)
.-+++.|++|+|||+|+.++.+.
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999998753
No 333
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=92.69 E-value=0.059 Score=44.19 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=19.1
Q ss_pred eeEEEcCCCCChHHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (288)
.+++.|++|+|||+|+.++.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999998743
No 334
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.59 E-value=0.063 Score=44.58 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=20.0
Q ss_pred ceeEEEcCCCCChHHHHHHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (288)
-.+++.|++|+|||+++.++.+.
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999998853
No 335
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=92.50 E-value=0.061 Score=44.55 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=20.5
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
+.+++.+|+|+|||.++...+..+
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999988877654
No 336
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.49 E-value=0.071 Score=44.74 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=19.8
Q ss_pred eeEEEcCCCCChHHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (288)
-+++.|++|+|||+|+.++.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 337
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.48 E-value=0.13 Score=43.63 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=27.7
Q ss_pred ce-eEEEcCCCCChHHHHHHHHHHh---CCcEEEEecC
Q 045456 245 RG-YLLFGPPGTGKSSLIAAMANYL---KFNIYDMELT 278 (288)
Q Consensus 245 rg-~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 278 (288)
+| +++|+++|.|||+.|-++|-.. |..++.+..-
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~ 65 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFI 65 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEee
Confidence 45 6789999999999999888654 8888888653
No 338
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=92.46 E-value=0.05 Score=53.38 Aligned_cols=25 Identities=24% Similarity=0.582 Sum_probs=22.4
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
+.+.||+|+||||++++|++.+...
T Consensus 372 ~~ivG~sGsGKSTLl~~l~g~~~p~ 396 (582)
T 3b60_A 372 VALVGRSGSGKSTIASLITRFYDID 396 (582)
T ss_dssp EEEEECTTSSHHHHHHHHTTTTCCS
T ss_pred EEEECCCCCCHHHHHHHHhhccCCC
Confidence 7899999999999999999987643
No 339
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=92.44 E-value=0.051 Score=44.26 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.5
Q ss_pred eeEEEcCCCCChHHHHHHHHHHh
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l 268 (288)
.+++.|++|+|||+|+.++.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998654
No 340
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.41 E-value=0.052 Score=51.32 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.9
Q ss_pred eEEEcCCCCChHHHHHHHHHHh
Q 045456 247 YLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l 268 (288)
+.|.||+|+|||||+.++++..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 5899999999999999999754
No 341
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=92.35 E-value=0.12 Score=47.25 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.2
Q ss_pred ceeEEEcCCCCChHHHHHHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (288)
.-+.+.|+||+||||++.++++.
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 34889999999999999999864
No 342
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.33 E-value=0.061 Score=44.26 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.1
Q ss_pred ceeEEEcCCCCChHHHHHHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (288)
-.+++.|++|+|||+|+..+.+.
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35999999999999999988764
No 343
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=92.29 E-value=0.16 Score=48.56 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=19.7
Q ss_pred eEEEcCCCCChHHHHHHHHHH
Q 045456 247 YLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~ 267 (288)
+.+.|+||+|||||..++++.
T Consensus 227 V~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 227 VAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp EEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHhCC
Confidence 889999999999999999875
No 344
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=92.28 E-value=0.11 Score=51.31 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.2
Q ss_pred eEEEcCCCCChHHHHHHHHHHh
Q 045456 247 YLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l 268 (288)
+.+.||+|+||||+.++|++.+
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC
T ss_pred EEEECCCCChHHHHHHHHhCCC
Confidence 7899999999999999999864
No 345
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=92.16 E-value=0.21 Score=52.65 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=37.4
Q ss_pred ccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHH------hCCcEEEEecCCC
Q 045456 213 AMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANY------LKFNIYDMELTSV 280 (288)
Q Consensus 213 ~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~------l~~~i~~l~~~~~ 280 (288)
+|-++..++|.+.+.. . ...+-+.++||+|.|||+||+.+++. ....++.++++..
T Consensus 131 VGRe~eLeeL~elL~~----~--------d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~ 192 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLE----L--------RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192 (1221)
T ss_dssp CCCHHHHHHHHHHHHH----C--------CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCS
T ss_pred CCcHHHHHHHHHHHhc----c--------CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCC
Confidence 5556666666554431 0 11356889999999999999999853 3445777777654
No 346
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=92.14 E-value=0.083 Score=48.76 Aligned_cols=22 Identities=45% Similarity=0.640 Sum_probs=19.0
Q ss_pred eEEEcCCCCChHHHHHHHHHHh
Q 045456 247 YLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l 268 (288)
.+++||.|+||||+..||+-.+
T Consensus 26 ~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999998543
No 347
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=92.12 E-value=0.033 Score=45.78 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=4.6
Q ss_pred ceeEEEcCCCCChHHHHHHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (288)
-.+++.|++|+|||+|+.++.+.
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999998765
No 348
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.11 E-value=0.058 Score=53.13 Aligned_cols=27 Identities=22% Similarity=0.644 Sum_probs=23.3
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
.-+.+.||+|+||||++++|++.+...
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~~p~ 408 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFYDVD 408 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCcCCC
Confidence 347899999999999999999987644
No 349
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=92.10 E-value=0.074 Score=46.11 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.2
Q ss_pred ceeEEEcCCCCChHHHHHHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (288)
-.++|.|+||+||||++.+|.+.
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 35899999999999999998754
No 350
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=92.07 E-value=0.25 Score=45.19 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=29.0
Q ss_pred cccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecC
Q 045456 242 VWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELT 278 (288)
Q Consensus 242 ~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 278 (288)
+.++-++..|.+|+||||++.++|..+ |..+..+++.
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D 63 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTD 63 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECC
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 334445667999999999999998775 8888888865
No 351
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.04 E-value=0.067 Score=52.12 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=20.9
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+-|.||.|+|||||+++|++.+.
T Consensus 315 ~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 315 IGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 67999999999999999998764
No 352
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=92.03 E-value=0.073 Score=46.03 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=20.7
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
..++|.|+||+||||++.++.+.-
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 458999999999999999998643
No 353
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=92.02 E-value=0.051 Score=53.44 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=22.3
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
+.+.||+|+||||++++|++.+...
T Consensus 373 ~~ivG~sGsGKSTLl~~l~g~~~p~ 397 (595)
T 2yl4_A 373 TALVGPSGSGKSTVLSLLLRLYDPA 397 (595)
T ss_dssp EEEECCTTSSSTHHHHHHTTSSCCS
T ss_pred EEEECCCCCCHHHHHHHHhcCcCCC
Confidence 7799999999999999999987543
No 354
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.00 E-value=0.057 Score=52.64 Aligned_cols=23 Identities=22% Similarity=0.509 Sum_probs=20.8
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+-|.||.|||||||+++|++.+.
T Consensus 297 ~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 297 IGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 66899999999999999998764
No 355
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.95 E-value=0.059 Score=52.56 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.6
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+-|.||.|+||||++++|++.+.
T Consensus 28 ~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 28 LGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 56999999999999999998763
No 356
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=91.94 E-value=0.092 Score=49.31 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=22.2
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
-..+.||.|+|||++..||+..++.
T Consensus 28 ~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 28 FTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHhhhcc
Confidence 4779999999999999999987764
No 357
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.91 E-value=0.097 Score=44.72 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=16.9
Q ss_pred ceeEEEcCCCCChHHHHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIAAMA 265 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA 265 (288)
+.+++.||+|||||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 458899999999998665554
No 358
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=91.88 E-value=0.054 Score=43.99 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=18.9
Q ss_pred ceeEEEcCCCCChHHHHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIAAMA 265 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA 265 (288)
-.+++.|++|+|||+++.++.
T Consensus 23 ~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 359999999999999999985
No 359
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=91.83 E-value=0.02 Score=51.90 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=19.4
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhCC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
-+.|.||||+|||||+.+|+..+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~~~ 199 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPELGL 199 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC----
T ss_pred EEEEECCCCCCHHHHHHHhcccccc
Confidence 3779999999999999999977643
No 360
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=91.82 E-value=0.081 Score=48.15 Aligned_cols=22 Identities=45% Similarity=0.640 Sum_probs=19.0
Q ss_pred eEEEcCCCCChHHHHHHHHHHh
Q 045456 247 YLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l 268 (288)
.+++||.|+|||++..||.--+
T Consensus 26 ~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999986544
No 361
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=91.81 E-value=0.16 Score=49.90 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=27.5
Q ss_pred cccce--eEEEcCCCCChHHHHHHHHHHhCCcEEEE
Q 045456 242 VWKRG--YLLFGPPGTGKSSLIAAMANYLKFNIYDM 275 (288)
Q Consensus 242 ~~~rg--~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (288)
+..|| ++++||+|||||.++..||+..+.+++.+
T Consensus 228 PigrGqr~~Ifgg~g~GKT~L~~~ia~~~~~~v~V~ 263 (600)
T 3vr4_A 228 PVTKGGAAAVPGPFGAGKTVVQHQIAKWSDVDLVVY 263 (600)
T ss_dssp CCBTTCEEEEECCTTSCHHHHHHHHHHHSSCSEEEE
T ss_pred CccCCCEEeeecCCCccHHHHHHHHHhccCCCEEEE
Confidence 33444 88999999999999999999887765543
No 362
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.79 E-value=0.13 Score=49.63 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=27.0
Q ss_pred cccce--eEEEcCCCCChHHH-HHHHHHHhCCcEEE
Q 045456 242 VWKRG--YLLFGPPGTGKSSL-IAAMANYLKFNIYD 274 (288)
Q Consensus 242 ~~~rg--~LL~GPpGtGKTsl-a~aiA~~l~~~i~~ 274 (288)
|..|| .+++|++|||||++ ...|++..+.+++.
T Consensus 158 PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~ 193 (502)
T 2qe7_A 158 PIGRGQRELIIGDRQTGKTTIAIDTIINQKGQDVIC 193 (502)
T ss_dssp CCBTTCBCEEEECSSSCHHHHHHHHHHGGGSCSEEE
T ss_pred ccccCCEEEEECCCCCCchHHHHHHHHHhhcCCcEE
Confidence 44455 89999999999999 57999999888543
No 363
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=91.76 E-value=0.27 Score=40.42 Aligned_cols=18 Identities=39% Similarity=0.392 Sum_probs=15.2
Q ss_pred ceeEEEcCCCCChHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIA 262 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~ 262 (288)
+.+++.+|+|+|||..+.
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 579999999999997544
No 364
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=91.73 E-value=0.22 Score=43.48 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=20.3
Q ss_pred ceeEEEcCCCCChHHHHHHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (288)
-.+++.|++|+||||++.++.+.
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999999864
No 365
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=91.69 E-value=0.068 Score=45.41 Aligned_cols=54 Identities=9% Similarity=0.068 Sum_probs=29.9
Q ss_pred CCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCC---cccceeEEEcCCCCChHHHHH
Q 045456 206 PATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGK---VWKRGYLLFGPPGTGKSSLIA 262 (288)
Q Consensus 206 p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~---~~~rg~LL~GPpGtGKTsla~ 262 (288)
..+|+++...+...+.+.+. -...+.-++...+ --.+.+++.+|+|+|||..+.
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEA---QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHT---TCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 34788888777666655431 0011111111000 013569999999999998643
No 366
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.62 E-value=0.079 Score=52.48 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.8
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+-|.||+|+||||+.++|++.+.
T Consensus 106 ~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 106 LGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCChHHHHHHHHhcCCC
Confidence 66999999999999999998764
No 367
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.58 E-value=0.076 Score=52.55 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=20.9
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+.|.||.|+|||||+++|++.+.
T Consensus 385 ~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 385 IGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCCHHHHHHHHhcCCC
Confidence 67999999999999999998764
No 368
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=91.56 E-value=0.16 Score=47.48 Aligned_cols=34 Identities=29% Similarity=0.301 Sum_probs=26.7
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEec
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMEL 277 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~ 277 (288)
..++++.||+|+|||+++..+...+ |..++.++.
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dp 89 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP 89 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 4579999999999999987666543 677777765
No 369
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=91.51 E-value=0.1 Score=44.17 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=19.0
Q ss_pred eeEEEcCCCCChHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMAN 266 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~ 266 (288)
-++|.|+||+|||+|+..+.+
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999999874
No 370
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.45 E-value=0.082 Score=52.33 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.9
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+.|.||+|+|||||+++|++.+.
T Consensus 120 ~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 120 VGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCChHHHHHHHHhCCCC
Confidence 77999999999999999998763
No 371
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=91.29 E-value=0.048 Score=53.45 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=22.3
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
+.+.||+|+||||++++|++.+...
T Consensus 370 ~~ivG~sGsGKSTll~~l~g~~~p~ 394 (578)
T 4a82_A 370 VAFVGMSGGGKSTLINLIPRFYDVT 394 (578)
T ss_dssp EEEECSTTSSHHHHHTTTTTSSCCS
T ss_pred EEEECCCCChHHHHHHHHhcCCCCC
Confidence 7799999999999999999987643
No 372
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.28 E-value=0.092 Score=50.02 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=19.2
Q ss_pred ceeEEEcCCCCChHHHHHHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (288)
+-.++.||||||||+++..+++.
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCCT
T ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Confidence 34678999999999999887753
No 373
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.27 E-value=0.1 Score=51.74 Aligned_cols=23 Identities=43% Similarity=0.729 Sum_probs=21.0
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
+.|.||.|+|||||+++|++.+.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 67999999999999999998763
No 374
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=91.24 E-value=0.11 Score=48.13 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=20.5
Q ss_pred ccce-eEEEcCCCCChHHHHHHHHHH
Q 045456 243 WKRG-YLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 243 ~~rg-~LL~GPpGtGKTsla~aiA~~ 267 (288)
...| ..|+||.|+|||++..||+..
T Consensus 24 ~~~g~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 24 FPEGVTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred EcCCeEEEECCCCCChhHHHHHHHHh
Confidence 3445 568999999999999999863
No 375
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=91.19 E-value=0.058 Score=46.10 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=30.4
Q ss_pred CCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCC---cccceeEEEcCCCCChHHHHH
Q 045456 206 PATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGK---VWKRGYLLFGPPGTGKSSLIA 262 (288)
Q Consensus 206 p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~---~~~rg~LL~GPpGtGKTsla~ 262 (288)
..+|+++...+.+.+.+.+. . +..+..++...+ --.+.+++.+|+|+|||..+.
T Consensus 29 ~~~f~~l~l~~~l~~~l~~~-g--~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 29 VDNFDDMNLKESLLRGIYAY-G--FEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp CCSGGGSCCCHHHHHHHHHH-T--CCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHC-C--CCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHH
Confidence 35799998777666655331 0 111111111000 013468999999999997643
No 376
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=91.17 E-value=0.17 Score=44.43 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.9
Q ss_pred eeEEEcCCCCChHHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (288)
-+.+.|+||+||||++.++.+.
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTS
T ss_pred eEEEEeCCCCCHHHHHHHHHCC
Confidence 4889999999999999999865
No 377
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=91.17 E-value=0.12 Score=50.61 Aligned_cols=35 Identities=20% Similarity=0.509 Sum_probs=23.0
Q ss_pred cceeEEEcCCCCChHHHHHH-HHHHh---C---CcEEEEecC
Q 045456 244 KRGYLLFGPPGTGKSSLIAA-MANYL---K---FNIYDMELT 278 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~a-iA~~l---~---~~i~~l~~~ 278 (288)
...+++.||||||||+++.. ++..+ + ..++.+..+
T Consensus 22 ~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft 63 (647)
T 3lfu_A 22 RSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFT 63 (647)
T ss_dssp SSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESS
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEecc
Confidence 34588999999999997544 44433 2 246666544
No 378
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=91.16 E-value=0.24 Score=50.26 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=34.2
Q ss_pred CCccccccChhhhHHHHHHHHHHh--hcHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHHHh
Q 045456 207 ATFDKIAMDPSMKQASIDDLDRFV--KRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 207 ~~~~~l~~~~~~k~~i~~~l~~~~--~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
.+|+++...+...+.+.+.-..+. ....+...+ .-.+.+++.||+|+|||+++..++...
T Consensus 72 ~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l--~~~~~vii~gpTGSGKTtllp~ll~~~ 133 (773)
T 2xau_A 72 NPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLY--QNNQIMVFVGETGSGKTTQIPQFVLFD 133 (773)
T ss_dssp CTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHH--HHCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccccCCCHHHHHHHHHhhcCChHHHHHHHHHHH--hCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 368888777766555443222121 111222111 112358899999999999777775543
No 379
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=91.12 E-value=0.1 Score=49.24 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.5
Q ss_pred eeEEEcCCCCChHHHHHHHHHHh
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l 268 (288)
-+.|.|+||+|||||+.++++..
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 47899999999999999998764
No 380
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=91.04 E-value=0.17 Score=49.52 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=27.5
Q ss_pred cccce--eEEEcCCCCChHHHHHHHHHHhCCcEEEE
Q 045456 242 VWKRG--YLLFGPPGTGKSSLIAAMANYLKFNIYDM 275 (288)
Q Consensus 242 ~~~rg--~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (288)
+..|| ++++||+|||||.++..||+..+.+++.+
T Consensus 217 PigrGqr~~Ifg~~g~GKT~l~~~ia~~~~~~v~V~ 252 (578)
T 3gqb_A 217 PVAMGGTAAIPGPFGSGKSVTQQSLAKWSNADVVVY 252 (578)
T ss_dssp CEETTCEEEECCCTTSCHHHHHHHHHHHSSCSEEEE
T ss_pred cccCCCEEeeeCCCCccHHHHHHHHHhccCCCEEEE
Confidence 34444 88999999999999999999887765543
No 381
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=91.04 E-value=0.23 Score=42.01 Aligned_cols=32 Identities=19% Similarity=0.396 Sum_probs=25.5
Q ss_pred eeEEEcCCCCChH-HHHHHHHHHh--CCcEEEEec
Q 045456 246 GYLLFGPPGTGKS-SLIAAMANYL--KFNIYDMEL 277 (288)
Q Consensus 246 g~LL~GPpGtGKT-sla~aiA~~l--~~~i~~l~~ 277 (288)
=+++|||.|+||| .|.+++.++. +..++.+..
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 3678999999999 8889888764 667777763
No 382
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=91.03 E-value=0.12 Score=49.52 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=18.0
Q ss_pred eEEEcCCCCChHHHHHHHHHH
Q 045456 247 YLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~ 267 (288)
+.+.|+||+|||||..++++.
T Consensus 236 V~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 236 TVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp EEEECCTTSSHHHHHHHCC--
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 889999999999999998765
No 383
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.01 E-value=0.12 Score=49.97 Aligned_cols=33 Identities=30% Similarity=0.443 Sum_probs=26.7
Q ss_pred cccce--eEEEcCCCCChHHH-HHHHHHHhCCcEEE
Q 045456 242 VWKRG--YLLFGPPGTGKSSL-IAAMANYLKFNIYD 274 (288)
Q Consensus 242 ~~~rg--~LL~GPpGtGKTsl-a~aiA~~l~~~i~~ 274 (288)
|..|| .+++|++|||||++ ...|++..+.+++.
T Consensus 171 PigrGQR~~I~g~~g~GKT~Lal~~I~~~~~~dv~~ 206 (515)
T 2r9v_A 171 PIGRGQRELIIGDRQTGKTAIAIDTIINQKGQGVYC 206 (515)
T ss_dssp CEETTCBEEEEEETTSSHHHHHHHHHHTTTTTTEEE
T ss_pred ccccCCEEEEEcCCCCCccHHHHHHHHHhhcCCcEE
Confidence 34445 89999999999999 57999998888543
No 384
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=91.01 E-value=0.2 Score=45.14 Aligned_cols=58 Identities=14% Similarity=0.181 Sum_probs=31.3
Q ss_pred CCccccccChhhhHHHHHHH-HHHh-hcHHHHHHhCCcccceeEEEcCCCCChHHHHHHH
Q 045456 207 ATFDKIAMDPSMKQASIDDL-DRFV-KRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAM 264 (288)
Q Consensus 207 ~~~~~l~~~~~~k~~i~~~l-~~~~-~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~ai 264 (288)
.+|+++...++..+.+.+.= ..+. -+.+.+..+-...++.+++.+|+|+|||..+...
T Consensus 5 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHH
Confidence 47788877776666554310 0000 0111112111112367999999999999865433
No 385
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.95 E-value=0.11 Score=46.90 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=20.1
Q ss_pred eEEEcCCCCChHHHHHHHHHHhC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
..|+||.|+|||+++.||.-.+|
T Consensus 27 ~~i~G~NGsGKS~ll~ai~~llg 49 (322)
T 1e69_A 27 TAIVGPNGSGKSNIIDAIKWVFG 49 (322)
T ss_dssp EEEECCTTTCSTHHHHHHHHTSC
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 56899999999999999996653
No 386
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=90.87 E-value=0.043 Score=50.93 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=23.1
Q ss_pred cccce-eEEEcCCCCChHHHHHHHHHHhC
Q 045456 242 VWKRG-YLLFGPPGTGKSSLIAAMANYLK 269 (288)
Q Consensus 242 ~~~rg-~LL~GPpGtGKTsla~aiA~~l~ 269 (288)
....| ..|+||.|+|||++.++|+..++
T Consensus 57 ~~~~G~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 57 ELGGGFCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp ECCSSEEEEEESHHHHHHHHTHHHHHHTT
T ss_pred ecCCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence 34444 56899999999999999988876
No 387
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=90.77 E-value=0.31 Score=43.30 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=20.0
Q ss_pred eeEEEcCCCCChHHHHHHHHHHh
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l 268 (288)
-+++.|.||+||||++.++.+.-
T Consensus 122 ~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 122 RALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred eEEEEecCCCchHHHHHHHhcCc
Confidence 48899999999999999998643
No 388
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.70 E-value=0.069 Score=52.49 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=22.8
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
-+.+.||+|+||||++++|++.+...
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~~~ 396 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLIDPE 396 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCccCC
Confidence 37799999999999999999987643
No 389
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=90.53 E-value=0.13 Score=50.46 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=27.4
Q ss_pred cccce--eEEEcCCCCChHHHHHHHHHHhCCcEEEE
Q 045456 242 VWKRG--YLLFGPPGTGKSSLIAAMANYLKFNIYDM 275 (288)
Q Consensus 242 ~~~rg--~LL~GPpGtGKTsla~aiA~~l~~~i~~l 275 (288)
+..+| .++.||+|||||.++..||+..+.+++.+
T Consensus 223 PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~~~~V~ 258 (588)
T 3mfy_A 223 PQAKGGTAAIPGPAGSGKTVTQHQLAKWSDAQVVIY 258 (588)
T ss_dssp CEETTCEEEECSCCSHHHHHHHHHHHHHSSCSEEEE
T ss_pred CcccCCeEEeecCCCCCHHHHHHHHHhccCCCEEEE
Confidence 33444 89999999999999999999877765543
No 390
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=89.94 E-value=0.049 Score=44.98 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=18.4
Q ss_pred eeEEEcCCCCChHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMAN 266 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~ 266 (288)
.+++.|+||+|||+|+.++.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 488999999999999988764
No 391
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=90.42 E-value=0.13 Score=49.77 Aligned_cols=32 Identities=28% Similarity=0.372 Sum_probs=25.9
Q ss_pred cccce--eEEEcCCCCChHHH-HHHHHHHhCCcEE
Q 045456 242 VWKRG--YLLFGPPGTGKSSL-IAAMANYLKFNIY 273 (288)
Q Consensus 242 ~~~rg--~LL~GPpGtGKTsl-a~aiA~~l~~~i~ 273 (288)
|..|| .+++|++|||||++ ...|++..+.+++
T Consensus 159 PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~ 193 (507)
T 1fx0_A 159 PVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVI 193 (507)
T ss_dssp CCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCE
T ss_pred ccccCCEEEEecCCCCCccHHHHHHHHHhhcCCcE
Confidence 34445 89999999999999 5799998887744
No 392
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=90.38 E-value=0.14 Score=48.04 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=19.0
Q ss_pred eEEEcCCCCChHHHHHHHHH
Q 045456 247 YLLFGPPGTGKSSLIAAMAN 266 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~ 266 (288)
+.|.||||+|||||..+|++
T Consensus 23 vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 23 TGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp EEEEECSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
Confidence 77899999999999999998
No 393
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=90.27 E-value=0.22 Score=45.03 Aligned_cols=58 Identities=14% Similarity=0.181 Sum_probs=31.7
Q ss_pred CCccccccChhhhHHHHHHH-HHHhh-cHHHHHHhCCcccceeEEEcCCCCChHHHHHHHHH
Q 045456 207 ATFDKIAMDPSMKQASIDDL-DRFVK-RRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMAN 266 (288)
Q Consensus 207 ~~~~~l~~~~~~k~~i~~~l-~~~~~-~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA~ 266 (288)
.+|+++...+...+.+.+.= ..+.. +.+.+..+- ..+.+++.+|+|+|||..+...+-
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~--~~~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAI--LGMDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHT--TTCCEEEECSSCSSHHHHHHHHHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh--cCCcEEEECCCCCcHHHHHHHHHH
Confidence 46888887777666554410 00000 111111111 135699999999999987644443
No 394
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=90.25 E-value=0.35 Score=42.58 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=28.3
Q ss_pred cceeEEEcC-CCCChHHHHHHHHHHh---CCcEEEEecC
Q 045456 244 KRGYLLFGP-PGTGKSSLIAAMANYL---KFNIYDMELT 278 (288)
Q Consensus 244 ~rg~LL~GP-pGtGKTsla~aiA~~l---~~~i~~l~~~ 278 (288)
.+-+++.|+ ||+|||+++..+|..+ |..+..|++.
T Consensus 82 ~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D 120 (271)
T 3bfv_A 82 VQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGD 120 (271)
T ss_dssp CCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 456778877 8999999988888765 7888888875
No 395
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=90.19 E-value=0.38 Score=41.73 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=20.9
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
-.+++.|++|+||||++.++.+.-
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 458999999999999999998643
No 396
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=90.09 E-value=0.15 Score=50.85 Aligned_cols=56 Identities=13% Similarity=0.263 Sum_probs=32.2
Q ss_pred CCCccccccChhhhHHHHHH-HHHHhh-cHHHHHHhCCcccceeEEEcCCCCChHHHHH
Q 045456 206 PATFDKIAMDPSMKQASIDD-LDRFVK-RRNFYRRVGKVWKRGYLLFGPPGTGKSSLIA 262 (288)
Q Consensus 206 p~~~~~l~~~~~~k~~i~~~-l~~~~~-~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~ 262 (288)
+.+|+++..++..++.+.+. +..+.. +.+.+.. ++.-.+.+++.||+|+|||+.+.
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~-~~~~~~~~lv~apTGsGKT~~~~ 64 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKK-GLLEGNRLLLTSPTGSGKTLIAE 64 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHT-TTTTTCCEEEECCTTSCHHHHHH
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHH-HhcCCCcEEEEcCCCCcHHHHHH
Confidence 35788888777666554331 000000 1222222 12235679999999999999873
No 397
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=90.07 E-value=0.51 Score=42.81 Aligned_cols=59 Identities=14% Similarity=0.192 Sum_probs=31.1
Q ss_pred CCCCccccccChhhhHHHHHH-HHHHhh-cHHHHHHhCCcccceeEEEcCCCCChHHHHHHHH
Q 045456 205 HPATFDKIAMDPSMKQASIDD-LDRFVK-RRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAMA 265 (288)
Q Consensus 205 ~p~~~~~l~~~~~~k~~i~~~-l~~~~~-~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~aiA 265 (288)
...+|+++...+++.+.+.+. +..+.. +.+.+..+ --.+.+++.+|+|+|||..+...+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i--~~~~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVA--ITGRDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHH--HHTCCEEEECCTTSCHHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH--hcCCCEEEECCCCcHHHHHHHHHH
Confidence 345789988877666665431 000000 01111111 013568999999999998654433
No 398
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=89.99 E-value=0.058 Score=45.04 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.4
Q ss_pred ceeEEEcCCCCChHHHHHHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (288)
.-+++.|++|+|||+|+.++.+.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 35889999999999999999865
No 399
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=89.99 E-value=0.52 Score=42.06 Aligned_cols=36 Identities=14% Similarity=0.299 Sum_probs=28.5
Q ss_pred cceeEEEcC-CCCChHHHHHHHHHHh---CCcEEEEecCC
Q 045456 244 KRGYLLFGP-PGTGKSSLIAAMANYL---KFNIYDMELTS 279 (288)
Q Consensus 244 ~rg~LL~GP-pGtGKTsla~aiA~~l---~~~i~~l~~~~ 279 (288)
.+-+++.|+ ||+|||+++..+|..+ |..+..|++.-
T Consensus 104 ~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~ 143 (299)
T 3cio_A 104 NNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 143 (299)
T ss_dssp CCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 456888887 8999999988888665 78888887653
No 400
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=89.93 E-value=0.15 Score=53.07 Aligned_cols=20 Identities=55% Similarity=0.921 Sum_probs=18.9
Q ss_pred eEEEcCCCCChHHHHHHHHH
Q 045456 247 YLLFGPPGTGKSSLIAAMAN 266 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~ 266 (288)
+.|.||.|+|||||+++|++
T Consensus 464 v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 464 YGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999995
No 401
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=89.81 E-value=0.32 Score=42.07 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=26.2
Q ss_pred ceeEEE-cCCCCChHHHHHHHHHHh--CCcEEEEecC
Q 045456 245 RGYLLF-GPPGTGKSSLIAAMANYL--KFNIYDMELT 278 (288)
Q Consensus 245 rg~LL~-GPpGtGKTsla~aiA~~l--~~~i~~l~~~ 278 (288)
+-+.++ +-.|+|||+++..+|..+ |..+..+++.
T Consensus 28 ~vI~v~s~kGGvGKTT~a~~LA~~la~g~~VlliD~D 64 (267)
T 3k9g_A 28 KIITIASIKGGVGKSTSAIILATLLSKNNKVLLIDMD 64 (267)
T ss_dssp EEEEECCSSSSSCHHHHHHHHHHHHTTTSCEEEEEEC
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHCCCCEEEEECC
Confidence 345554 569999999999888877 6778777765
No 402
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=89.76 E-value=0.23 Score=47.63 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=24.2
Q ss_pred cccce--eEEEcCCCCChHHHHHHHHHHhCC
Q 045456 242 VWKRG--YLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 242 ~~~rg--~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
+..|| ++++|++|+|||+|+..||+....
T Consensus 148 pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~ 178 (469)
T 2c61_A 148 TLVRGQKLPIFSASGLPHNEIALQIARQASV 178 (469)
T ss_dssp CCBTTCBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 33444 778899999999999999998865
No 403
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=89.75 E-value=0.15 Score=44.77 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.4
Q ss_pred eeEEEcCCCCChHHHHHHHHHHh
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l 268 (288)
-+++.|+||+||||++.++++..
T Consensus 101 ~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 101 RVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTC
T ss_pred heEEeCCCCCCHHHHHHHHhccc
Confidence 58899999999999999998654
No 404
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=89.68 E-value=0.35 Score=42.84 Aligned_cols=34 Identities=15% Similarity=0.347 Sum_probs=27.8
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELT 278 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 278 (288)
+-+.++|-.|+|||+++..+|..+ |..+..|++.
T Consensus 42 ~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 78 (307)
T 3end_A 42 KVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCD 78 (307)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 456677999999999998888766 7888888775
No 405
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=89.67 E-value=0.42 Score=46.41 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=20.5
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
+.+|+.+|+|+|||..+.+++..+
T Consensus 199 ~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 199 KRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEecCCCChHHHHHHHHHHH
Confidence 568999999999999988887664
No 406
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=89.54 E-value=0.34 Score=42.62 Aligned_cols=33 Identities=15% Similarity=0.138 Sum_probs=25.6
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhCCcEEEEec
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLKFNIYDMEL 277 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~ 277 (288)
+.+++.+|+|+|||..+...+-+.+..++.+..
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P 64 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMKSLVVTP 64 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEECS
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeC
Confidence 469999999999999877777666766665543
No 407
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.50 E-value=0.13 Score=47.30 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=19.1
Q ss_pred eeEEEcCCCCChHHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (288)
.+++.|++|+|||||+.+|.+.
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTC
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 4789999999999999998643
No 408
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=89.40 E-value=0.5 Score=41.71 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=19.4
Q ss_pred eeEEEcCCCCChHHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (288)
.+++.|+||+|||+++..+.+.
T Consensus 157 ~i~i~G~~~~GKssli~~~~~~ 178 (332)
T 2wkq_A 157 KCVVVGDGAVGKTCLLISYTTN 178 (332)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCChHHHHHHHHhC
Confidence 4899999999999999888753
No 409
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=89.22 E-value=0.22 Score=42.19 Aligned_cols=60 Identities=13% Similarity=0.202 Sum_probs=32.0
Q ss_pred CCCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCC---cccceeEEEcCCCCChHHHH-HHHHHH
Q 045456 205 HPATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGK---VWKRGYLLFGPPGTGKSSLI-AAMANY 267 (288)
Q Consensus 205 ~p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~---~~~rg~LL~GPpGtGKTsla-~aiA~~ 267 (288)
...+|+++...+...+.+.+. . +..+.-++...+ --.+.+++.+|+|+|||..+ ..+...
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~~-g--~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~ 85 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRAA-G--FERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDS 85 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHHT-T--CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCHhhcCCCHHHHHHHHHC-C--CCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHH
Confidence 345799988777666655431 0 111111111111 01356999999999999863 333343
No 410
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=89.13 E-value=0.78 Score=38.18 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=15.2
Q ss_pred ceeEEEcCCCCChHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIA 262 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~ 262 (288)
+.+++.+|+|+|||..+.
T Consensus 42 ~~~lv~a~TGsGKT~~~~ 59 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYL 59 (219)
T ss_dssp CCEEEECCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 568999999999998643
No 411
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=89.12 E-value=0.18 Score=44.68 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.2
Q ss_pred eeEEEcCCCCChHHHHHHHHHHh
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l 268 (288)
-+.+.|+||+||||++.++.+.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 48899999999999999998653
No 412
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=88.98 E-value=0.18 Score=46.32 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=19.8
Q ss_pred cce-eEEEcCCCCChHHHHHHHHH
Q 045456 244 KRG-YLLFGPPGTGKSSLIAAMAN 266 (288)
Q Consensus 244 ~rg-~LL~GPpGtGKTsla~aiA~ 266 (288)
..| .+|+||.|.|||++..||.-
T Consensus 24 ~~gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 24 EKGIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 345 56899999999999999986
No 413
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=88.93 E-value=0.11 Score=48.99 Aligned_cols=21 Identities=52% Similarity=0.627 Sum_probs=19.6
Q ss_pred eEEEcCCCCChHHHHHHHHHH
Q 045456 247 YLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~ 267 (288)
+.|.||||+|||||+++|++.
T Consensus 160 VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 160 VGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCcHHHHHHHHHcC
Confidence 789999999999999999876
No 414
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=88.93 E-value=0.23 Score=47.95 Aligned_cols=32 Identities=38% Similarity=0.442 Sum_probs=25.5
Q ss_pred cccce--eEEEcCCCCChHHH-HHHHHHHhCCcEE
Q 045456 242 VWKRG--YLLFGPPGTGKSSL-IAAMANYLKFNIY 273 (288)
Q Consensus 242 ~~~rg--~LL~GPpGtGKTsl-a~aiA~~l~~~i~ 273 (288)
+..|| .+++|++|||||++ ...|++.-+.+++
T Consensus 158 PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~~~dv~ 192 (513)
T 3oaa_A 158 PIGRGQRELIIGDRQTGKTALAIDAIINQRDSGIK 192 (513)
T ss_dssp CCBTTCBCEEEESSSSSHHHHHHHHHHTTSSSSCE
T ss_pred ccccCCEEEeecCCCCCcchHHHHHHHhhccCCce
Confidence 34445 89999999999999 5789988777754
No 415
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=88.90 E-value=0.17 Score=43.73 Aligned_cols=54 Identities=15% Similarity=0.135 Sum_probs=29.4
Q ss_pred CCccccccChhhhHHHHHHH-HHHh-hcHHHHHHhCCcccceeEEEcCCCCChHHHHH
Q 045456 207 ATFDKIAMDPSMKQASIDDL-DRFV-KRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIA 262 (288)
Q Consensus 207 ~~~~~l~~~~~~k~~i~~~l-~~~~-~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~ 262 (288)
.+|+++...+...+.+.+.= ..+. -+.+.+..+ --.+.+++.+|+|+|||..+.
T Consensus 43 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i--~~~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 43 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLA--LQGRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHH
T ss_pred CCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHH--hCCCCEEEEcCCCCCchhHhH
Confidence 47888887776665553310 0000 001111111 013579999999999998643
No 416
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=88.85 E-value=0.19 Score=45.90 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=20.0
Q ss_pred eeEEEcCCCCChHHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (288)
-+.+.|++|+||||++.++.+.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5889999999999999999973
No 417
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=88.84 E-value=0.45 Score=44.62 Aligned_cols=33 Identities=24% Similarity=0.181 Sum_probs=28.5
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhCCcEEEEecC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLKFNIYDMELT 278 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~ 278 (288)
..++.+|+|+|||..+.+++..++.+++.+-..
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 489999999999999998888888888877654
No 418
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=88.81 E-value=0.22 Score=48.17 Aligned_cols=28 Identities=36% Similarity=0.515 Sum_probs=22.3
Q ss_pred cccce--eEEEcCCCCChHHH-HHHHHHHhC
Q 045456 242 VWKRG--YLLFGPPGTGKSSL-IAAMANYLK 269 (288)
Q Consensus 242 ~~~rg--~LL~GPpGtGKTsl-a~aiA~~l~ 269 (288)
|..|| .+++|++|||||++ +..|++..+
T Consensus 158 PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~ 188 (510)
T 2ck3_A 158 PIGRGQRELIIGDRQTGKTSIAIDTIINQKR 188 (510)
T ss_dssp CCBTTCBCEEEESTTSSHHHHHHHHHHHTHH
T ss_pred ccccCCEEEEecCCCCCchHHHHHHHHHHHh
Confidence 34455 89999999999999 567887765
No 419
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=88.70 E-value=0.49 Score=43.10 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=29.1
Q ss_pred cceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELT 278 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 278 (288)
++-+++.|.+|+|||+++.++|..+ |..+..++..
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D 53 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD 53 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 4557788999999999999999776 6778888775
No 420
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=88.68 E-value=0.26 Score=50.31 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.3
Q ss_pred ceeEEEcCCCCChHHHHHHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (288)
+-+.|.||.|+||||+.++||..
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 34789999999999999999975
No 421
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=88.66 E-value=0.5 Score=41.23 Aligned_cols=31 Identities=26% Similarity=0.263 Sum_probs=22.2
Q ss_pred eeEEEcCCCCChHHHHHHHHHHh---C-CcEEEEe
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYL---K-FNIYDME 276 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l---~-~~i~~l~ 276 (288)
..++.+|+|+|||..+.+++..+ + .+++.+-
T Consensus 130 ~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~ 164 (282)
T 1rif_A 130 RRILNLPTSAGRSLIQALLARYYLENYEGKILIIV 164 (282)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEEC
T ss_pred CeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEE
Confidence 35779999999999987777653 2 2555553
No 422
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=88.60 E-value=0.22 Score=50.54 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=20.8
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
+-+.|.||+|+||||+.+.||...
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhhh
Confidence 347899999999999999999753
No 423
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=88.31 E-value=0.52 Score=41.85 Aligned_cols=36 Identities=14% Similarity=0.241 Sum_probs=28.2
Q ss_pred cceeEEEcC-CCCChHHHHHHHHHHh---CCcEEEEecCC
Q 045456 244 KRGYLLFGP-PGTGKSSLIAAMANYL---KFNIYDMELTS 279 (288)
Q Consensus 244 ~rg~LL~GP-pGtGKTsla~aiA~~l---~~~i~~l~~~~ 279 (288)
.+-+++.|+ ||+|||+++..+|..+ |..+..|++.-
T Consensus 92 ~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~ 131 (286)
T 3la6_A 92 NNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDM 131 (286)
T ss_dssp CCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCT
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccC
Confidence 456777766 9999999998888776 77888887653
No 424
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=88.12 E-value=0.35 Score=46.20 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=24.0
Q ss_pred cccce--eEEEcCCCCChHHHHHHHHHHhCC
Q 045456 242 VWKRG--YLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 242 ~~~rg--~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
+..|| ++++|++|+|||+|+..||+....
T Consensus 147 pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 147 TLVRGQKLPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp CCBTTCBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred ccccCCEEEEeCCCCcChHHHHHHHHHHHHh
Confidence 33444 888999999999999999998754
No 425
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=88.04 E-value=0.063 Score=44.18 Aligned_cols=21 Identities=43% Similarity=0.700 Sum_probs=18.4
Q ss_pred eeEEEcCCCCChHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMAN 266 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~ 266 (288)
.+++.|++|+|||+|+.++.+
T Consensus 35 ki~vvG~~~~GKSsli~~l~~ 55 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFAD 55 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999988763
No 426
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=87.95 E-value=0.44 Score=44.64 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.3
Q ss_pred eeEEEcCCCCChHHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (288)
-+.|.|+||+|||||..++++.
T Consensus 24 kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 24 KIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CEEEECCSSSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3789999999999999999865
No 427
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=87.94 E-value=1 Score=40.75 Aligned_cols=56 Identities=18% Similarity=0.252 Sum_probs=31.2
Q ss_pred CCCccccccChhhhHHHHHH-HHHHhh-cHHHHHHhCCcccceeEEEcCCCCChHHHH
Q 045456 206 PATFDKIAMDPSMKQASIDD-LDRFVK-RRNFYRRVGKVWKRGYLLFGPPGTGKSSLI 261 (288)
Q Consensus 206 p~~~~~l~~~~~~k~~i~~~-l~~~~~-~~~~~~~~g~~~~rg~LL~GPpGtGKTsla 261 (288)
..+|+++...+...+.+.+. +..+.. +.+.+..+-....+.+++.+|+|+|||..+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 24 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp SSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 35788988887766665431 000000 111111111112367999999999999874
No 428
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=87.85 E-value=0.63 Score=42.07 Aligned_cols=34 Identities=15% Similarity=0.234 Sum_probs=27.1
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELT 278 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 278 (288)
+-++..|.+|+|||+++.++|..+ |..+..+++.
T Consensus 20 ~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D 56 (329)
T 2woo_A 20 KWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTD 56 (329)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 345567999999999999998766 7788877764
No 429
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=87.82 E-value=0.22 Score=49.83 Aligned_cols=68 Identities=16% Similarity=0.255 Sum_probs=35.6
Q ss_pred CccccccChhhhHHHHHH-HHHHhh-cHHHHHHhCCcccceeEEEcCCCCChHHHH-HHHHHHh---CCcEEEEe
Q 045456 208 TFDKIAMDPSMKQASIDD-LDRFVK-RRNFYRRVGKVWKRGYLLFGPPGTGKSSLI-AAMANYL---KFNIYDME 276 (288)
Q Consensus 208 ~~~~l~~~~~~k~~i~~~-l~~~~~-~~~~~~~~g~~~~rg~LL~GPpGtGKTsla-~aiA~~l---~~~i~~l~ 276 (288)
+|+++..++..++.+.+. +..+.. +.+.+.. ++.-.+.+++.||+|+|||..+ .++...+ +..++.+.
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~-~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~ 75 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKS-GILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIV 75 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTT-TGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEEC
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 477777776665544331 000000 1122221 1222467999999999999876 3443222 44555544
No 430
>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A
Probab=87.61 E-value=0.25 Score=47.98 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=29.3
Q ss_pred hhhHHHHHHHHHHhhcHHHHH-----HhCCcccceeEEEcCCCCChHHHHHH
Q 045456 217 SMKQASIDDLDRFVKRRNFYR-----RVGKVWKRGYLLFGPPGTGKSSLIAA 263 (288)
Q Consensus 217 ~~k~~i~~~l~~~~~~~~~~~-----~~g~~~~rg~LL~GPpGtGKTsla~a 263 (288)
+.|+-+...+...+....++. ++|..-+...+++|++|||||+|+..
T Consensus 203 emKK~~ftl~n~~~~~~G~L~~H~sanv~~~g~~~~~ffGlSGtGKTTLs~d 254 (532)
T 1ytm_A 203 EMKKGMFSMMNFYLPLQGIAAMHCSANTDLEGKNTAIFFGLSGTGKTTLSTD 254 (532)
T ss_dssp HHHHHHHHHHHHHTGGGTCEEEEEEEEEETTSCSEEEEECCTTSSHHHHHCC
T ss_pred hhhHhHHHHHHHHHHHCCcEeecCeeeeCCCCCeEEEEEecCCCCHHHHhhC
Confidence 677777776654443333221 12221125689999999999998854
No 431
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*
Probab=87.45 E-value=0.25 Score=48.01 Aligned_cols=46 Identities=24% Similarity=0.390 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHHhhcHHHHH-----HhCCcccceeEEEcCCCCChHHHHHH
Q 045456 217 SMKQASIDDLDRFVKRRNFYR-----RVGKVWKRGYLLFGPPGTGKSSLIAA 263 (288)
Q Consensus 217 ~~k~~i~~~l~~~~~~~~~~~-----~~g~~~~rg~LL~GPpGtGKTsla~a 263 (288)
+.|+-+.......+....++. ..|. -....+|+|++|||||+|+..
T Consensus 210 emKK~~ftl~n~~l~~~G~L~mH~sanvg~-~g~~~lffGlSGtGKTTLs~d 260 (540)
T 2olr_A 210 EMKKGMFSMMNYLLPLKGIASMHCSANVGE-KGDVAVFFGLSGTGKTTLSTD 260 (540)
T ss_dssp HHHHHHHHHHHHHTGGGTCEEECEEEEECT-TSCEEEEECSTTSSHHHHHCC
T ss_pred HhhhhHHHHhHHHHHHCCcEeecceeeeCC-CCCEEEEEccCCCCHHHHhcC
Confidence 677777665554443322221 1221 124599999999999998854
No 432
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=87.32 E-value=0.35 Score=46.19 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=24.2
Q ss_pred cccce--eEEEcCCCCChHHHHHHHHHHhCC
Q 045456 242 VWKRG--YLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 242 ~~~rg--~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
+..|| ++++|++|+|||+++..||+....
T Consensus 143 pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a 173 (464)
T 3gqb_B 143 TLVRGQKLPIFSGSGLPANEIAAQIARQATV 173 (464)
T ss_dssp CCBTTCBCCEEEETTSCHHHHHHHHHHHCBC
T ss_pred ccccCCEEEEecCCCCCchHHHHHHHHHHHh
Confidence 34445 888999999999999999998765
No 433
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=87.31 E-value=0.54 Score=45.31 Aligned_cols=27 Identities=41% Similarity=0.727 Sum_probs=22.1
Q ss_pred cccce--eEEEcCCCCChHHHHHHHHHHh
Q 045456 242 VWKRG--YLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 242 ~~~rg--~LL~GPpGtGKTsla~aiA~~l 268 (288)
+..|| ++++|++|+|||.|+.-|++..
T Consensus 161 pigkGqr~gIfgg~GvGKT~L~~~l~~~~ 189 (498)
T 1fx0_B 161 PYRRGGKIGLFGGAGVGKTVLIMELINNI 189 (498)
T ss_dssp CCCTTCCEEEEECSSSSHHHHHHHHHHHT
T ss_pred ccccCCeEEeecCCCCCchHHHHHHHHHH
Confidence 33445 8999999999999998888764
No 434
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=87.19 E-value=0.22 Score=53.59 Aligned_cols=27 Identities=30% Similarity=0.534 Sum_probs=23.4
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
.-+.+.||+|+||||++++|.+++...
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~~~~~ 471 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRYYDVL 471 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTSSCCS
T ss_pred cEEEEEecCCCcHHHHHHHhccccccc
Confidence 337899999999999999999988654
No 435
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=87.10 E-value=0.5 Score=43.11 Aligned_cols=56 Identities=14% Similarity=0.245 Sum_probs=31.4
Q ss_pred CCccccccChhhhHHHHHHH-HHHh-hcHHHHHHhCCcccceeEEEcCCCCChHHHHHHH
Q 045456 207 ATFDKIAMDPSMKQASIDDL-DRFV-KRRNFYRRVGKVWKRGYLLFGPPGTGKSSLIAAM 264 (288)
Q Consensus 207 ~~~~~l~~~~~~k~~i~~~l-~~~~-~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~ai 264 (288)
.+|+++...+.+.+.+.+.= ..+. -+.+.+..+ --.+.+++.+|+|+|||..+...
T Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i--~~~~~~lv~a~TGsGKT~~~~~~ 94 (410)
T 2j0s_A 37 PTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQI--IKGRDVIAQSQSGTGKTATFSIS 94 (410)
T ss_dssp CSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHH--HTTCCEEEECCTTSSHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHH--hCCCCEEEECCCCCCchHHHHHH
Confidence 47999988777666654310 0000 011111111 01356999999999999765433
No 436
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=87.03 E-value=0.51 Score=45.27 Aligned_cols=22 Identities=41% Similarity=0.631 Sum_probs=20.0
Q ss_pred eEEEcCCCCChHHHHHHHHHHh
Q 045456 247 YLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l 268 (288)
++++|++|+|||+|+.-||+..
T Consensus 156 ~~Ifgg~G~GKT~L~~~i~~~~ 177 (482)
T 2ck3_D 156 IGLFGGAGVGKTVLIMELINNV 177 (482)
T ss_dssp EEEEECTTSSHHHHHHHHHHHT
T ss_pred eeeecCCCCChHHHHHHHHHhh
Confidence 8999999999999998888764
No 437
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=86.89 E-value=0.69 Score=40.05 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=15.2
Q ss_pred ceeEEEcCCCCChHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIA 262 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~ 262 (288)
+.+++.+|+|+|||..+.
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 568999999999998643
No 438
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=86.87 E-value=0.75 Score=39.24 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=15.0
Q ss_pred ceeEEEcCCCCChHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIA 262 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~ 262 (288)
+.+++.+|+|+|||..+.
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 569999999999998543
No 439
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=86.86 E-value=0.79 Score=39.25 Aligned_cols=31 Identities=16% Similarity=0.070 Sum_probs=24.5
Q ss_pred eEEEcCCCCChHHHHHHHHHHh---CCcEEEEec
Q 045456 247 YLLFGPPGTGKSSLIAAMANYL---KFNIYDMEL 277 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~ 277 (288)
++++||.|+|||+.+..+|..+ |..++.+..
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~ 64 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKP 64 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 4479999999999888777654 778887763
No 440
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*
Probab=86.84 E-value=0.23 Score=48.25 Aligned_cols=46 Identities=26% Similarity=0.460 Sum_probs=28.3
Q ss_pred hhhHHHHHHHHHHhhcHHHHHH-----hCCcccceeEEEcCCCCChHHHHHH
Q 045456 217 SMKQASIDDLDRFVKRRNFYRR-----VGKVWKRGYLLFGPPGTGKSSLIAA 263 (288)
Q Consensus 217 ~~k~~i~~~l~~~~~~~~~~~~-----~g~~~~rg~LL~GPpGtGKTsla~a 263 (288)
+.|+-+.......+....++.. .|. -.+..++.||+|||||+|+..
T Consensus 194 e~KK~~l~i~~~~~~~~G~L~~H~sa~~~~-~g~~~~ffGlSGtGKTtLs~~ 244 (529)
T 1j3b_A 194 EIKKSIFTVMNYLMPKRGVFPMHASANVGK-EGDVAVFFGLSGTGKTTLSTD 244 (529)
T ss_dssp HHHHHHHHHHHHHGGGGTCEEEECEEEECT-TCCEEEEEECTTSCHHHHTCB
T ss_pred chHHHHHHHHHHHHHHCCeEeccceeeeCC-CCcEEEEEccccCChhhHhhc
Confidence 4677776655544443333321 111 124588999999999998865
No 441
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=86.83 E-value=0.14 Score=53.40 Aligned_cols=24 Identities=38% Similarity=0.582 Sum_probs=21.5
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
+.|.||.|+|||||+++|++.+..
T Consensus 702 vaIiGpNGSGKSTLLklLaGll~P 725 (986)
T 2iw3_A 702 IAVIGPNGAGKSTLINVLTGELLP 725 (986)
T ss_dssp EEECSCCCHHHHHHHHHHTTSSCC
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 678999999999999999988753
No 442
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=86.79 E-value=0.26 Score=51.06 Aligned_cols=22 Identities=41% Similarity=0.484 Sum_probs=19.2
Q ss_pred ceeEEEcCCCCChHHHHHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIAAMAN 266 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~ 266 (288)
+-+.|.||.|+||||+.+.+|.
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCchHHHHHHHHH
Confidence 3478999999999999999874
No 443
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=86.77 E-value=0.25 Score=45.09 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.5
Q ss_pred eeEEEcCCCCChHHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (288)
-+.+.|.||+||||++.++.+.
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~ 54 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGR 54 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTS
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999753
No 444
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=86.76 E-value=0.48 Score=45.70 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.2
Q ss_pred eeEEEcCCCCChHHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (288)
-++|.|+||+|||||+.++.+.
T Consensus 43 kV~lvG~~~vGKSSLl~~l~~~ 64 (535)
T 3dpu_A 43 KVHLIGDGMAGKTSLLKQLIGE 64 (535)
T ss_dssp EEEEESSSCSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3889999999999999999864
No 445
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=86.70 E-value=0.33 Score=50.36 Aligned_cols=21 Identities=29% Similarity=0.312 Sum_probs=18.6
Q ss_pred ceeEEEcCCCCChHHHHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIAAMA 265 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA 265 (288)
+-++|.||.|+||||+.+.+|
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 348899999999999999985
No 446
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=86.63 E-value=0.56 Score=45.42 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=26.6
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh-------CCcEEEEecCC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL-------KFNIYDMELTS 279 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l-------~~~i~~l~~~~ 279 (288)
..+|+.|++|+|||+++++|...+ ...++.++...
T Consensus 168 pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp CSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 359999999999999999987643 23577776543
No 447
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Probab=86.50 E-value=0.31 Score=47.31 Aligned_cols=45 Identities=31% Similarity=0.423 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHHHhhcHHHHH-----HhCCcccceeEEEcCCCCChHHHHH
Q 045456 217 SMKQASIDDLDRFVKRRNFYR-----RVGKVWKRGYLLFGPPGTGKSSLIA 262 (288)
Q Consensus 217 ~~k~~i~~~l~~~~~~~~~~~-----~~g~~~~rg~LL~GPpGtGKTsla~ 262 (288)
+.|+-+...+...+....++. ..|. -....+++|++|||||+|+.
T Consensus 182 emKK~~ftl~n~~~~~~g~L~~H~san~g~-~g~~~~ffGlSGtGKTTLs~ 231 (524)
T 1ii2_A 182 EMKKGILTVMFELMPQMNHLCMHASANVGK-QGDVTVFFGLSGTGKTTLSA 231 (524)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEESEEEEECT-TCCEEEEECCTTSSHHHHHC
T ss_pred HHHHHHHHHHHHHHHHCCcEeecceeeeCC-CCCEEEEEccCCcchhhhhh
Confidence 677777665554443222221 1121 12458999999999999875
No 448
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=86.22 E-value=0.24 Score=53.13 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.8
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
-+-|.||+|+||||++++|++.+...
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~~~~~ 443 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRLYDPL 443 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 37899999999999999999887643
No 449
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=86.10 E-value=0.74 Score=40.35 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=26.7
Q ss_pred ceeEEEc---CCCCChHHHHHHHHHHh---CCcEEEEecCC
Q 045456 245 RGYLLFG---PPGTGKSSLIAAMANYL---KFNIYDMELTS 279 (288)
Q Consensus 245 rg~LL~G---PpGtGKTsla~aiA~~l---~~~i~~l~~~~ 279 (288)
+-+.+.+ -.|+|||+++..+|..+ |..+..|++.-
T Consensus 35 ~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~ 75 (298)
T 2oze_A 35 EAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDL 75 (298)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred cEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 4466664 89999999999888766 77877777653
No 450
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=86.06 E-value=0.84 Score=41.88 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=27.6
Q ss_pred ceeEEEc-CCCCChHHHHHHHHHHh---CCcEEEEecC
Q 045456 245 RGYLLFG-PPGTGKSSLIAAMANYL---KFNIYDMELT 278 (288)
Q Consensus 245 rg~LL~G-PpGtGKTsla~aiA~~l---~~~i~~l~~~ 278 (288)
+-+.++| -.|+|||+++..+|..+ |..+..+++.
T Consensus 144 kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 144 SVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 3466664 79999999998888765 8899999977
No 451
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=86.02 E-value=1.5 Score=37.21 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=14.8
Q ss_pred ceeEEEcCCCCChHHHH
Q 045456 245 RGYLLFGPPGTGKSSLI 261 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla 261 (288)
+.+++.+|+|+|||...
T Consensus 67 ~~~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSY 83 (242)
T ss_dssp CCEEEEECTTSCHHHHH
T ss_pred CCEEEECCCcCHHHHHH
Confidence 56999999999999864
No 452
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=85.96 E-value=0.38 Score=44.40 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=19.7
Q ss_pred ceeEEEcCCCCChHHHHHHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (288)
.-+||.|++|+||||+++.|.-.
T Consensus 34 ~killlG~~~SGKST~~kq~~i~ 56 (362)
T 1zcb_A 34 VKILLLGAGESGKSTFLKQMRII 56 (362)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999998533
No 453
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=85.93 E-value=0.89 Score=41.85 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=21.1
Q ss_pred ceeEEEcCCCCChHHHHHHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (288)
+.+.+.|+||+||||++.+|.+.
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhh
Confidence 46889999999999999999987
No 454
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=85.88 E-value=1.3 Score=38.16 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=26.8
Q ss_pred ceeEEE-cCCCCChHHHHHHHHHHh---CCcEEEEecCC
Q 045456 245 RGYLLF-GPPGTGKSSLIAAMANYL---KFNIYDMELTS 279 (288)
Q Consensus 245 rg~LL~-GPpGtGKTsla~aiA~~l---~~~i~~l~~~~ 279 (288)
+-+.+. +-.|+|||+++..+|..+ |..+..+++.-
T Consensus 19 ~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~ 57 (262)
T 2ph1_A 19 SRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADF 57 (262)
T ss_dssp CEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 345554 668999999998888776 78888887653
No 455
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=85.71 E-value=0.78 Score=40.41 Aligned_cols=40 Identities=3% Similarity=-0.164 Sum_probs=28.6
Q ss_pred CCcccceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEecCC
Q 045456 240 GKVWKRGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMELTS 279 (288)
Q Consensus 240 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~~ 279 (288)
|++..+.+|+.|.||+|||+++...+.+- |-+.+.+...+
T Consensus 17 Gl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e 59 (260)
T 3bs4_A 17 IKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISY 59 (260)
T ss_dssp BCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred CCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeC
Confidence 55555568889999999999876664432 66777777654
No 456
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=85.62 E-value=1.1 Score=40.75 Aligned_cols=57 Identities=16% Similarity=0.232 Sum_probs=31.7
Q ss_pred CCccccccChhhhHHHHHHHHHHhh----cHHHHHHhCCcccceeEEEcCCCCChHHHH-HHHHHH
Q 045456 207 ATFDKIAMDPSMKQASIDDLDRFVK----RRNFYRRVGKVWKRGYLLFGPPGTGKSSLI-AAMANY 267 (288)
Q Consensus 207 ~~~~~l~~~~~~k~~i~~~l~~~~~----~~~~~~~~g~~~~rg~LL~GPpGtGKTsla-~aiA~~ 267 (288)
.+|+++...+...+.+.+. .+.. +.+.+..+ ...+.+++.+|+|+|||..+ .++...
T Consensus 40 ~~f~~~~l~~~~~~~l~~~--~~~~~~~~Q~~~i~~~--~~~~~~lv~a~TGsGKT~~~~~~~~~~ 101 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAY--GFEKPSAIQQRAILPC--IKGYDVIAQAQSGTGKTATFAISILQQ 101 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHH--HTTCCEEECCCSCSSSHHHHHHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHc--CCCCCCHHHHHHhHHH--hCCCCEEEECCCCCcccHHHHHHHHHH
Confidence 4788888877766655431 0000 01111111 01345899999999999874 333333
No 457
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=85.33 E-value=0.9 Score=41.59 Aligned_cols=35 Identities=14% Similarity=0.109 Sum_probs=28.0
Q ss_pred cceeEEEcCCCCChHHHHHHHHH-----HhCCcEEEEecC
Q 045456 244 KRGYLLFGPPGTGKSSLIAAMAN-----YLKFNIYDMELT 278 (288)
Q Consensus 244 ~rg~LL~GPpGtGKTsla~aiA~-----~l~~~i~~l~~~ 278 (288)
.+-+++.|.+|+|||+++.++|. ..|..+..++..
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D 57 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD 57 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 45577789999999999988885 456788888875
No 458
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=85.13 E-value=1.3 Score=39.28 Aligned_cols=61 Identities=18% Similarity=0.263 Sum_probs=34.1
Q ss_pred CCCccccccChhhhHHHHHHHHHHhh----cHHHHHHhCCcccceeEEEcCCCCChHHHHH-HHHHHh
Q 045456 206 PATFDKIAMDPSMKQASIDDLDRFVK----RRNFYRRVGKVWKRGYLLFGPPGTGKSSLIA-AMANYL 268 (288)
Q Consensus 206 p~~~~~l~~~~~~k~~i~~~l~~~~~----~~~~~~~~g~~~~rg~LL~GPpGtGKTsla~-aiA~~l 268 (288)
-.+|+++...+.+.+.+.+. .|.. +.+.+..+-...++.+++.+|+|+|||.... .+...+
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~--g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l 156 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhh
Confidence 35899998887766655431 0000 1111222211124679999999999997632 444443
No 459
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=85.07 E-value=0.35 Score=43.76 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=18.7
Q ss_pred eeEEEcCCCCChHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMAN 266 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~ 266 (288)
-+++.|+||+|||+|+.++.+
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~ 187 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKL 187 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCS
T ss_pred eEEEECCCCccHHHHHHHHhC
Confidence 388999999999999998864
No 460
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=85.05 E-value=1.9 Score=40.43 Aligned_cols=61 Identities=18% Similarity=0.268 Sum_probs=33.8
Q ss_pred CCCccccccChhhhHHHHHHHHHHhh----cHHHHHHhCCcccceeEEEcCCCCChHHH-HHHHHHHh
Q 045456 206 PATFDKIAMDPSMKQASIDDLDRFVK----RRNFYRRVGKVWKRGYLLFGPPGTGKSSL-IAAMANYL 268 (288)
Q Consensus 206 p~~~~~l~~~~~~k~~i~~~l~~~~~----~~~~~~~~g~~~~rg~LL~GPpGtGKTsl-a~aiA~~l 268 (288)
..+|+++...+...+.+.+. .|-. +.+.+..+-...++.+++.+|+|+|||.. +.++...+
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~--g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l 156 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTC
T ss_pred cCCHHHcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHH
Confidence 35788888887766555330 0000 11112221111246799999999999986 34444433
No 461
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=84.93 E-value=1.2 Score=43.50 Aligned_cols=32 Identities=31% Similarity=0.474 Sum_probs=26.2
Q ss_pred eEEEcCCCCChHHHHHHHHHHh---CCcEEEEecC
Q 045456 247 YLLFGPPGTGKSSLIAAMANYL---KFNIYDMELT 278 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~~ 278 (288)
+++.|.+|+|||+++.++|..+ |..+..++..
T Consensus 330 ~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~D 364 (589)
T 1ihu_A 330 IMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD 364 (589)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred EEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCC
Confidence 5567999999999999988776 7788777665
No 462
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=84.79 E-value=0.29 Score=48.75 Aligned_cols=19 Identities=32% Similarity=0.550 Sum_probs=16.4
Q ss_pred eEEEcCCCCChHHHHHHHH
Q 045456 247 YLLFGPPGTGKSSLIAAMA 265 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA 265 (288)
+.|.||+|+||||++++|.
T Consensus 351 vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 351 VAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEECSTTSSHHHHHTTTH
T ss_pred EEEEeeCCCCHHHHHHHHH
Confidence 6799999999999997653
No 463
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=84.59 E-value=0.35 Score=46.43 Aligned_cols=22 Identities=32% Similarity=0.600 Sum_probs=20.1
Q ss_pred eeEEEcCCCCChHHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (288)
-+.|.|+||+|||||..++++.
T Consensus 245 kV~ivG~pnvGKSSLln~L~~~ 266 (482)
T 1xzp_A 245 RMVIVGKPNVGKSTLLNRLLNE 266 (482)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECcCCCcHHHHHHHHHCC
Confidence 3789999999999999999986
No 464
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=84.46 E-value=0.5 Score=43.07 Aligned_cols=50 Identities=16% Similarity=0.290 Sum_probs=28.4
Q ss_pred CCccccccChhhhHHHHHHHHHHhh----cHHHHHHhCCcccceeEEEcCCCCChHHH
Q 045456 207 ATFDKIAMDPSMKQASIDDLDRFVK----RRNFYRRVGKVWKRGYLLFGPPGTGKSSL 260 (288)
Q Consensus 207 ~~~~~l~~~~~~k~~i~~~l~~~~~----~~~~~~~~g~~~~rg~LL~GPpGtGKTsl 260 (288)
.+|+++...+...+.+... .|.. +.+.+..+ ...+.+++.+|+|+|||..
T Consensus 15 ~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~i--~~~~~~lv~a~TGsGKT~~ 68 (417)
T 2i4i_A 15 ESFSDVEMGEIIMGNIELT--RYTRPTPVQKHAIPII--KEKRDLMACAQTGSGKTAA 68 (417)
T ss_dssp SSGGGSCCCHHHHHHHHHH--TCCSCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHH
T ss_pred CCHhhCCCCHHHHHHHHHC--CCCCCCHHHHHHHHHH--ccCCCEEEEcCCCCHHHHH
Confidence 4699988777666555331 0000 11111111 1135689999999999974
No 465
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=84.30 E-value=0.48 Score=44.75 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=19.6
Q ss_pred eeEEEcCCCCChHHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (288)
-++|.|+||+|||||..++.+.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999998753
No 466
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=84.08 E-value=0.97 Score=41.33 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=25.2
Q ss_pred eeEEEcCCCCChHHHHHHHHHHh----CCcEEEEec
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYL----KFNIYDMEL 277 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l----~~~i~~l~~ 277 (288)
++++..|+|+|||..+.+++..+ +..++.+-.
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P 60 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 78999999999999888877665 556666544
No 467
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=83.96 E-value=0.28 Score=44.23 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=29.6
Q ss_pred CCCccccccChhhhHHHHHHHHHHhhcHHHHHHhCCc---ccceeEEEcCCCCChHHHH
Q 045456 206 PATFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKV---WKRGYLLFGPPGTGKSSLI 261 (288)
Q Consensus 206 p~~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~---~~rg~LL~GPpGtGKTsla 261 (288)
..+|+++..++.+.+.+... . ...+..++...++ -.+.+++.+|+|+|||..+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~-g--~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVFGY-G--FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF 75 (394)
T ss_dssp CCSSGGGCCCHHHHHHHHHH-T--CCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHc-C--CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHH
Confidence 35788888777766655431 0 0011111110000 1346899999999999863
No 468
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=83.89 E-value=0.5 Score=40.84 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=19.4
Q ss_pred eeEEEcCC---------CCChHHHHHHHHH
Q 045456 246 GYLLFGPP---------GTGKSSLIAAMAN 266 (288)
Q Consensus 246 g~LL~GPp---------GtGKTsla~aiA~ 266 (288)
-+++.|.| |+|||+|+.++.+
T Consensus 21 ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 21 NISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp EEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred EEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 48899999 9999999999986
No 469
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=83.81 E-value=0.45 Score=44.23 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=18.9
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
|.|-|+=|+||||+++.+++.++..
T Consensus 52 It~EG~dGsGKTT~~~~Lae~L~~~ 76 (376)
T 1of1_A 52 VYIDGPHGMGKTTTTQLLVALGSRD 76 (376)
T ss_dssp EEECSSTTSSHHHHHHHHHC----C
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhC
Confidence 5578999999999999999988643
No 470
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=83.08 E-value=0.67 Score=48.58 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=18.6
Q ss_pred ceeEEEcCCCCChHHHHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIAAMA 265 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA 265 (288)
+-++|.||.|+||||+.+.|+
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 458899999999999999983
No 471
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=83.05 E-value=0.54 Score=44.13 Aligned_cols=24 Identities=42% Similarity=0.560 Sum_probs=20.7
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
.-+.+.|.||+|||||+.++.+.-
T Consensus 176 ~ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 176 IQFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred cEEEEEcCCCCCHHHHHHHHhCCC
Confidence 458899999999999999998653
No 472
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=82.98 E-value=0.35 Score=52.06 Aligned_cols=36 Identities=22% Similarity=0.416 Sum_probs=26.7
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhCCc--EEEEecCCC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLKFN--IYDMELTSV 280 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~--i~~l~~~~~ 280 (288)
.-+-++||+|+||||++.++.+.+... -+.+++-++
T Consensus 1106 e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di 1143 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEI 1143 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEET
T ss_pred CEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEh
Confidence 337899999999999999999877532 344444444
No 473
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=82.98 E-value=0.83 Score=48.98 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=22.1
Q ss_pred eEEEcCCCCChHHHHHHHHHHhCCc
Q 045456 247 YLLFGPPGTGKSSLIAAMANYLKFN 271 (288)
Q Consensus 247 ~LL~GPpGtGKTsla~aiA~~l~~~ 271 (288)
+-+.||+|+||||++++|++.+...
T Consensus 1062 v~ivG~sGsGKSTl~~~l~g~~~p~ 1086 (1284)
T 3g5u_A 1062 LALVGSSGCGKSTVVQLLERFYDPM 1086 (1284)
T ss_dssp EEEECSSSTTHHHHHHHHTTSSCCS
T ss_pred EEEECCCCCCHHHHHHHHhcCcCCC
Confidence 6799999999999999999887654
No 474
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=82.88 E-value=1.2 Score=40.88 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.5
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
+.+.+.|.||+||||++.+|.+..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhh
Confidence 468899999999999999999874
No 475
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=82.87 E-value=0.78 Score=43.39 Aligned_cols=33 Identities=27% Similarity=0.284 Sum_probs=23.8
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh---CC-cEEEEec
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL---KF-NIYDMEL 277 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l---~~-~i~~l~~ 277 (288)
+..++.||+|+|||..+..++..+ +. .++.+-.
T Consensus 129 ~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P 165 (510)
T 2oca_A 129 RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVP 165 (510)
T ss_dssp SEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEES
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 468999999999999987766552 32 5555543
No 476
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=82.66 E-value=1.1 Score=41.35 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=25.7
Q ss_pred eEEE-cCCCCChHHHHHHHHHHh---------CCcEEEEecC
Q 045456 247 YLLF-GPPGTGKSSLIAAMANYL---------KFNIYDMELT 278 (288)
Q Consensus 247 ~LL~-GPpGtGKTsla~aiA~~l---------~~~i~~l~~~ 278 (288)
+.++ |-.|+||||++..+|..+ |..+..|++.
T Consensus 111 Iav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D 152 (398)
T 3ez2_A 111 IFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLD 152 (398)
T ss_dssp EEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEEC
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCC
Confidence 4444 779999999998888765 7888888875
No 477
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=81.70 E-value=0.48 Score=42.62 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=23.0
Q ss_pred ccceeEEEcCCCCChHHHHHHHHHHh
Q 045456 243 WKRGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
....||||||+|+||++.+.++++.+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~ 42 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVA 42 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHH
Confidence 35589999999999999999999876
No 478
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=81.41 E-value=0.82 Score=43.40 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=19.8
Q ss_pred eeEEEcCCCCChHHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (288)
.++|.|.||+|||+|..++.+.
T Consensus 324 ki~lvG~~nvGKSsLl~~l~~~ 345 (497)
T 3lvq_E 324 RILMLGLDAAGKTTILYKLKLG 345 (497)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEcCCCCCHHHHHHHHhcC
Confidence 4889999999999999999864
No 479
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=81.28 E-value=0.99 Score=37.75 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=15.1
Q ss_pred ceeEEEcCCCCChHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIA 262 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~ 262 (288)
+.+++.+|+|+|||..+.
T Consensus 58 ~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 58 IDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 568999999999997543
No 480
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=80.78 E-value=0.66 Score=46.10 Aligned_cols=15 Identities=53% Similarity=0.727 Sum_probs=13.9
Q ss_pred eEEEcCCCCChHHHH
Q 045456 247 YLLFGPPGTGKSSLI 261 (288)
Q Consensus 247 ~LL~GPpGtGKTsla 261 (288)
+-|.||+|+|||||+
T Consensus 47 ~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 47 VVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHh
Confidence 679999999999996
No 481
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=80.34 E-value=2.3 Score=42.57 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=20.0
Q ss_pred eeEEEcCCCCChHHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (288)
.+.+.|+||+||||++.++.+.
T Consensus 71 ~V~VvG~~naGKSSLlNaLlg~ 92 (695)
T 2j69_A 71 RLLVLGDMKRGKSTFLNALIGE 92 (695)
T ss_dssp EEEEECCTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999864
No 482
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=79.29 E-value=0.78 Score=41.89 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.2
Q ss_pred eeEEEcCCCCChHHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (288)
-+.|.|.||+|||||+.++.+.
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred eeeeeCCCCCCHHHHHHHHHcC
Confidence 3779999999999999998754
No 483
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=79.22 E-value=4.5 Score=40.09 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=28.1
Q ss_pred eeEEEcCCCCChHHHHHHHHHHhCCcEEEEecC
Q 045456 246 GYLLFGPPGTGKSSLIAAMANYLKFNIYDMELT 278 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~ 278 (288)
..+|.|.+|+|||.++..++..++.|++.|..+
T Consensus 30 ~~~l~g~tgs~kt~~~a~~~~~~~~~~lvv~~~ 62 (664)
T 1c4o_A 30 FVTLLGATGTGKTVTMAKVIEALGRPALVLAPN 62 (664)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCCEEEEESS
T ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecC
Confidence 357889999999999999998889998877543
No 484
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=79.08 E-value=1.5 Score=39.99 Aligned_cols=35 Identities=14% Similarity=0.128 Sum_probs=26.2
Q ss_pred ceeEEEcCCCCChHHHHHHHHHH-----hCCcEEEEecCC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANY-----LKFNIYDMELTS 279 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~-----l~~~i~~l~~~~ 279 (288)
+-++..|-+|+|||+++.++|.. .|..+..++..-
T Consensus 19 ~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~ 58 (354)
T 2woj_A 19 KWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDP 58 (354)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 34556799999999998888744 457788877653
No 485
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=78.89 E-value=1.3 Score=37.52 Aligned_cols=17 Identities=35% Similarity=0.573 Sum_probs=14.7
Q ss_pred ceeEEEcCCCCChHHHH
Q 045456 245 RGYLLFGPPGTGKSSLI 261 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla 261 (288)
+.+++.+|+|+|||..+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 56899999999999863
No 486
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=78.80 E-value=0.89 Score=44.27 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=19.9
Q ss_pred eeEEEcCCCCChHHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (288)
-+++.|.||+|||||+.++.+.
T Consensus 67 ~V~vvG~~n~GKSTLIN~Llg~ 88 (550)
T 2qpt_A 67 MVLVAGQYSTGKTSFIQYLLEQ 88 (550)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999865
No 487
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=78.66 E-value=2.1 Score=40.23 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=19.2
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
+.+++.+|+|+|||..+...+-+.
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~ 43 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHH 43 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHH
Confidence 468999999999998866666444
No 488
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=78.64 E-value=0.75 Score=45.32 Aligned_cols=22 Identities=32% Similarity=0.295 Sum_probs=19.5
Q ss_pred eeEEEcCCCCChHHHHHHHHHH
Q 045456 246 GYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 246 g~LL~GPpGtGKTsla~aiA~~ 267 (288)
-+.+.|+||+|||+|+.++++.
T Consensus 40 ~VaivG~pnvGKStLiN~L~g~ 61 (592)
T 1f5n_A 40 VVAIVGLYRTGKSYLMNKLAGK 61 (592)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHhHcCC
Confidence 3779999999999999999864
No 489
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=78.50 E-value=0.39 Score=46.17 Aligned_cols=30 Identities=27% Similarity=0.307 Sum_probs=23.3
Q ss_pred Ccccce-eEEEcCCCCChHHHHHHHHHHhCC
Q 045456 241 KVWKRG-YLLFGPPGTGKSSLIAAMANYLKF 270 (288)
Q Consensus 241 ~~~~rg-~LL~GPpGtGKTsla~aiA~~l~~ 270 (288)
+.+..| .+|+|+.|+|||++..||.-.++.
T Consensus 56 l~f~~g~n~i~G~NGaGKS~lleAl~~llg~ 86 (517)
T 4ad8_A 56 LELGGGFCAFTGETGAGKSIIVDALGLLLGG 86 (517)
T ss_dssp EECCCSEEEEEESHHHHHHHHTHHHHHHTCS
T ss_pred EecCCCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 344445 568999999999999999877653
No 490
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=77.97 E-value=2.5 Score=37.99 Aligned_cols=36 Identities=17% Similarity=0.306 Sum_probs=28.4
Q ss_pred ccceeEEEcCCCCChHHHHHHHHHH---hCCcEEEEecC
Q 045456 243 WKRGYLLFGPPGTGKSSLIAAMANY---LKFNIYDMELT 278 (288)
Q Consensus 243 ~~rg~LL~GPpGtGKTsla~aiA~~---l~~~i~~l~~~ 278 (288)
-.|-+-++|--|+||||++.-+|.. .|..+..|++.
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~D 85 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCD 85 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 3456778999999999987766654 58888888876
No 491
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=77.96 E-value=2.4 Score=43.05 Aligned_cols=33 Identities=24% Similarity=0.138 Sum_probs=22.5
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh---CCcEEEEec
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL---KFNIYDMEL 277 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l---~~~i~~l~~ 277 (288)
...|+.||+|+|||..+...+-.. |..++.+..
T Consensus 390 ~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaP 425 (780)
T 1gm5_A 390 MNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVP 425 (780)
T ss_dssp CCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECS
T ss_pred CcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 468999999999998765544332 555555443
No 492
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=77.41 E-value=1.3 Score=40.86 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=17.6
Q ss_pred eEE-EcCCCCChHHHHHHHHHHh---------CCcEEEEecC
Q 045456 247 YLL-FGPPGTGKSSLIAAMANYL---------KFNIYDMELT 278 (288)
Q Consensus 247 ~LL-~GPpGtGKTsla~aiA~~l---------~~~i~~l~~~ 278 (288)
+.+ .|-.|+|||+++..+|..+ |..+..|++.
T Consensus 114 Iav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D 155 (403)
T 3ez9_A 114 IFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLD 155 (403)
T ss_dssp EEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEES
T ss_pred EEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCC
Confidence 444 4779999999988888765 6888888875
No 493
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=76.89 E-value=2.4 Score=38.95 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=27.7
Q ss_pred CccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHH
Q 045456 208 TFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLI 261 (288)
Q Consensus 208 ~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla 261 (288)
+||.+..++...+++-+.+..++-.. .+. | +.-.++-||.+|+|||.+.
T Consensus 50 ~FD~Vf~~~~~Q~~Vy~~~~~plv~~-~l~--G--~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 50 TFDRVFDMSCKQSDIFDFSIKPTVDD-ILN--G--YNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp ECSEEECTTCCHHHHHHHHTHHHHHH-HTT--T--CCEEEEEECSTTSSHHHHH
T ss_pred eeCeEECCCCccHHHHHHHHHHHHHH-HhC--C--CcceEEEECCCCCCcceEe
Confidence 57777666555555544322222110 110 2 2335777999999999976
No 494
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=76.78 E-value=2.5 Score=39.86 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=18.9
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHh
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYL 268 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l 268 (288)
+.+++.+|+|+|||..+...+-..
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~ 46 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHH 46 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHHHH
Confidence 468999999999998866655444
No 495
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=76.32 E-value=2 Score=38.94 Aligned_cols=49 Identities=14% Similarity=0.417 Sum_probs=28.2
Q ss_pred CccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHH
Q 045456 208 TFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLI 261 (288)
Q Consensus 208 ~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla 261 (288)
+||.+.+++...+++-+.+..++-.. .+. | +.-.++-||.+|+|||.+.
T Consensus 47 ~FD~Vf~~~~sQ~~Vy~~~~~plv~~-~l~--G--~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 47 AFDRVFQSSTSQEQVYNDCAKKIVKD-VLE--G--YNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp ECSEEECTTCCHHHHHHHHTHHHHHH-HHT--T--CCEEEEEECSTTSSHHHHH
T ss_pred ECCeEeCCCCCHHHHHHHHhhhhHHH-HhC--C--CeEEEEEECCCCCCCceEe
Confidence 67777666555555544432222111 111 2 2335777999999999976
No 496
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=75.84 E-value=6 Score=38.03 Aligned_cols=34 Identities=26% Similarity=0.393 Sum_probs=25.3
Q ss_pred ceeEEEcCCCCChHHHHHHHHHHhCCcEEEEecC
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANYLKFNIYDMELT 278 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~l~~~i~~l~~~ 278 (288)
+.+++..|+|||||...-..|-..+.+++.+..+
T Consensus 27 ~~~~~~a~TGtGKT~~~l~~~~~~~~~~~~~~~t 60 (540)
T 2vl7_A 27 KTLLLNAKPGLGKTVFVEVLGMQLKKKVLIFTRT 60 (540)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEEESC
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhCCCcEEEEcCC
Confidence 5688999999999976665565566677766543
No 497
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=75.68 E-value=2.4 Score=41.71 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=19.6
Q ss_pred ceeEEEcCCCCChHHHHHHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIAAMANY 267 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~~ 267 (288)
+.+++.+|+|+|||..+...+.+
T Consensus 23 ~~~ll~~~TGsGKTl~~~~~i~~ 45 (699)
T 4gl2_A 23 KNIIICLPTGCGKTRVAVYIAKD 45 (699)
T ss_dssp CCEEECCCTTSCHHHHHHHHHHH
T ss_pred CCEEEEcCCCCcHHHHHHHHHHH
Confidence 46999999999999988777755
No 498
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=75.05 E-value=2.4 Score=39.06 Aligned_cols=49 Identities=18% Similarity=0.263 Sum_probs=28.5
Q ss_pred CccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHH
Q 045456 208 TFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLI 261 (288)
Q Consensus 208 ~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla 261 (288)
+||.+.+++...+++-+.+..++-.. .+. | +.-.++-||.+|+|||.+.
T Consensus 58 ~FD~Vf~~~~~Q~~Vy~~~~~plv~~-~l~--G--~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 58 TFDMVFGASTKQIDVYRSVVCPILDE-VIM--G--YNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp ECSEEECTTCCHHHHHHHHHHHHHHH-HHT--T--CEEEEEEEECTTSSHHHHH
T ss_pred eceEEEeccCchhHHHHHHHHHhHHH-HhC--C--CceEEEEeCCCCCCCceEE
Confidence 57777666555555555443332211 111 3 2334777999999999876
No 499
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=75.02 E-value=2.8 Score=38.36 Aligned_cols=49 Identities=22% Similarity=0.296 Sum_probs=29.1
Q ss_pred CccccccChhhhHHHHHHHHHHhhcHHHHHHhCCcccceeEEEcCCCCChHHHH
Q 045456 208 TFDKIAMDPSMKQASIDDLDRFVKRRNFYRRVGKVWKRGYLLFGPPGTGKSSLI 261 (288)
Q Consensus 208 ~~~~l~~~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rg~LL~GPpGtGKTsla 261 (288)
+||.+.+++...+++-+.+..++-.. .+. | +.-.++-||..|+|||.+.
T Consensus 64 ~FD~Vf~~~~sQ~~Vy~~~~~plv~~-~l~--G--~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 64 HFDHAFPATISQDEMYQALILPLVDK-LLE--G--FQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp ECSEEECTTCCHHHHHHHHTHHHHHH-HHH--T--CCEEEEEESSTTSSHHHHH
T ss_pred EcceEECCCCCHHHHHHhhccchhhH-hhC--C--CceEEEEecCCCCCCCeEE
Confidence 67777766655555555433222211 111 3 2335778999999999976
No 500
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=74.95 E-value=2.6 Score=38.50 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=16.9
Q ss_pred ceeEEEcCCCCChHHHHHHHHH
Q 045456 245 RGYLLFGPPGTGKSSLIAAMAN 266 (288)
Q Consensus 245 rg~LL~GPpGtGKTsla~aiA~ 266 (288)
+.+++.+|+|+|||..+...+-
T Consensus 37 ~~~lv~apTGsGKT~~~l~~~~ 58 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMTAL 58 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHH
Confidence 4689999999999995444433
Done!