Query 045458
Match_columns 1170
No_of_seqs 774 out of 5690
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 13:28:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045458.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045458hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 5E-101 1E-105 1003.0 79.6 821 2-993 157-1003(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 2.6E-57 5.6E-62 558.9 34.3 452 31-546 161-649 (889)
3 PLN00113 leucine-rich repeat r 100.0 9.4E-38 2E-42 409.9 34.3 510 349-865 43-592 (968)
4 PLN00113 leucine-rich repeat r 100.0 1.7E-35 3.7E-40 388.5 29.3 447 394-841 109-589 (968)
5 PF00931 NB-ARC: NB-ARC domain 100.0 7.5E-36 1.6E-40 335.5 17.9 270 33-308 1-284 (287)
6 KOG0444 Cytoskeletal regulator 99.9 1.5E-29 3.3E-34 279.2 -4.9 366 427-843 10-381 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 3.6E-30 7.9E-35 272.1 -15.8 258 404-668 46-308 (565)
8 KOG4194 Membrane glycoprotein 99.9 2.2E-26 4.8E-31 253.7 5.1 364 445-832 77-448 (873)
9 KOG0472 Leucine-rich repeat pr 99.9 2E-28 4.4E-33 258.9 -13.4 438 425-874 46-535 (565)
10 KOG0444 Cytoskeletal regulator 99.9 3.9E-27 8.5E-32 260.3 -4.2 372 466-866 4-384 (1255)
11 KOG4194 Membrane glycoprotein 99.9 4.9E-26 1.1E-30 251.0 3.7 390 405-821 54-466 (873)
12 PLN03210 Resistant to P. syrin 99.9 3.8E-23 8.2E-28 271.3 26.4 324 462-861 581-910 (1153)
13 KOG0618 Serine/threonine phosp 99.9 3.5E-25 7.6E-30 257.7 -5.5 410 404-856 46-488 (1081)
14 KOG0618 Serine/threonine phosp 99.9 9.2E-25 2E-29 254.2 -7.5 422 394-837 59-490 (1081)
15 PRK15387 E3 ubiquitin-protein 99.6 4.9E-15 1.1E-19 180.5 19.2 259 493-838 202-460 (788)
16 PRK15387 E3 ubiquitin-protein 99.6 3E-15 6.6E-20 182.3 15.3 136 565-719 324-459 (788)
17 KOG4237 Extracellular matrix p 99.6 9.1E-17 2E-21 171.3 -2.0 278 415-693 58-358 (498)
18 PRK15370 E3 ubiquitin-protein 99.6 9.6E-15 2.1E-19 179.3 13.9 245 516-834 178-426 (754)
19 PRK15370 E3 ubiquitin-protein 99.6 6.1E-15 1.3E-19 181.0 11.3 243 405-693 180-427 (754)
20 PRK04841 transcriptional regul 99.5 2.5E-12 5.5E-17 168.7 25.7 299 22-345 8-335 (903)
21 KOG4237 Extracellular matrix p 99.4 6.2E-15 1.3E-19 157.5 -4.0 146 428-597 50-199 (498)
22 cd00116 LRR_RI Leucine-rich re 99.4 3.1E-14 6.8E-19 162.9 -1.9 210 606-833 77-317 (319)
23 KOG0617 Ras suppressor protein 99.4 1.4E-14 3E-19 137.2 -5.1 160 529-691 23-183 (264)
24 KOG0617 Ras suppressor protein 99.3 6.1E-14 1.3E-18 132.9 -5.3 82 767-854 119-200 (264)
25 cd00116 LRR_RI Leucine-rich re 99.3 7.5E-13 1.6E-17 151.4 1.7 254 444-716 21-318 (319)
26 KOG4658 Apoptotic ATPase [Sign 99.3 4.3E-12 9.3E-17 158.6 7.5 160 483-644 514-678 (889)
27 PRK00411 cdc6 cell division co 99.2 9.3E-10 2E-14 129.6 21.2 254 22-287 24-308 (394)
28 COG3899 Predicted ATPase [Gene 99.2 5E-10 1.1E-14 140.9 18.2 312 29-345 1-389 (849)
29 TIGR00635 ruvB Holliday juncti 99.2 5.3E-10 1.1E-14 126.6 16.6 275 28-327 4-293 (305)
30 COG2909 MalT ATP-dependent tra 99.1 2.4E-09 5.3E-14 126.7 21.5 301 22-347 13-343 (894)
31 PRK00080 ruvB Holliday junctio 99.1 6.1E-10 1.3E-14 126.9 15.9 282 23-327 20-314 (328)
32 TIGR02928 orc1/cdc6 family rep 99.1 1.4E-08 3E-13 118.4 27.1 290 22-323 9-350 (365)
33 PF01637 Arch_ATPase: Archaeal 99.1 3.1E-10 6.8E-15 123.3 9.9 199 30-234 1-233 (234)
34 PF05729 NACHT: NACHT domain 99.0 3E-09 6.6E-14 108.7 11.9 146 52-204 1-163 (166)
35 TIGR03015 pepcterm_ATPase puta 99.0 4.4E-08 9.6E-13 108.9 20.8 180 51-239 43-242 (269)
36 KOG3207 Beta-tubulin folding c 98.8 6.9E-10 1.5E-14 121.1 -0.6 85 655-739 195-282 (505)
37 KOG0532 Leucine-rich repeat (L 98.7 8.6E-10 1.9E-14 123.9 -2.3 180 624-833 88-270 (722)
38 COG3903 Predicted ATPase [Gene 98.7 1.2E-08 2.6E-13 112.3 5.6 280 50-345 13-317 (414)
39 PTZ00112 origin recognition co 98.7 5.9E-07 1.3E-11 107.5 19.8 249 22-284 749-1029(1164)
40 KOG3207 Beta-tubulin folding c 98.7 3.1E-09 6.8E-14 116.1 0.6 184 629-834 141-337 (505)
41 COG2256 MGS1 ATPase related to 98.7 1.5E-07 3.2E-12 103.0 13.2 245 23-300 19-289 (436)
42 COG4886 Leucine-rich repeat (L 98.7 2.5E-08 5.5E-13 117.5 7.9 180 632-840 114-294 (394)
43 KOG1259 Nischarin, modulator o 98.7 5.5E-09 1.2E-13 108.2 1.3 37 634-670 284-320 (490)
44 KOG1259 Nischarin, modulator o 98.7 5.3E-09 1.1E-13 108.3 0.4 126 680-834 283-410 (490)
45 PRK06893 DNA replication initi 98.6 8.6E-07 1.9E-11 95.2 17.1 178 23-237 11-205 (229)
46 KOG0532 Leucine-rich repeat (L 98.6 1E-09 2.3E-14 123.2 -5.8 189 636-855 77-271 (722)
47 COG4886 Leucine-rich repeat (L 98.6 4.1E-08 8.9E-13 115.7 7.0 193 407-603 97-294 (394)
48 PRK12402 replication factor C 98.6 7E-07 1.5E-11 102.9 15.9 204 23-234 10-225 (337)
49 PRK13342 recombination factor 98.6 1.9E-06 4.1E-11 101.3 19.6 183 23-237 7-198 (413)
50 KOG1909 Ran GTPase-activating 98.5 2.9E-09 6.2E-14 113.5 -5.0 140 677-835 153-310 (382)
51 PRK14961 DNA polymerase III su 98.5 4.1E-06 8.8E-11 96.6 19.7 201 23-233 11-218 (363)
52 PRK14963 DNA polymerase III su 98.5 5.4E-06 1.2E-10 98.6 20.9 194 23-232 9-214 (504)
53 TIGR03420 DnaA_homol_Hda DnaA 98.5 2.3E-06 5E-11 92.3 16.1 177 27-238 14-204 (226)
54 PRK07471 DNA polymerase III su 98.5 8.9E-06 1.9E-10 92.8 21.3 201 23-236 14-239 (365)
55 PLN03025 replication factor C 98.5 4.3E-06 9.3E-11 94.9 18.0 186 23-232 8-197 (319)
56 PRK00440 rfc replication facto 98.5 4.2E-06 9.1E-11 95.6 17.3 187 24-234 13-202 (319)
57 PRK14960 DNA polymerase III su 98.4 1.1E-05 2.5E-10 95.7 20.7 202 23-233 10-217 (702)
58 PRK07003 DNA polymerase III su 98.4 7E-06 1.5E-10 98.5 19.0 199 23-234 11-220 (830)
59 PRK14949 DNA polymerase III su 98.4 1.3E-05 2.8E-10 98.2 21.7 190 23-233 11-218 (944)
60 TIGR01242 26Sp45 26S proteasom 98.4 2E-06 4.4E-11 99.5 13.9 177 25-229 119-328 (364)
61 KOG4341 F-box protein containi 98.4 6.6E-09 1.4E-13 113.1 -6.2 86 469-554 138-231 (483)
62 PF14580 LRR_9: Leucine-rich r 98.4 1.8E-07 3.9E-12 94.3 4.5 84 771-861 60-146 (175)
63 PRK14956 DNA polymerase III su 98.4 6.7E-06 1.4E-10 95.2 17.8 200 23-231 13-218 (484)
64 PRK04195 replication factor C 98.4 6.3E-06 1.4E-10 98.9 18.0 185 23-235 9-202 (482)
65 PTZ00202 tuzin; Provisional 98.4 4.9E-05 1.1E-09 85.2 23.2 182 9-204 236-434 (550)
66 PF05496 RuvB_N: Holliday junc 98.4 3.8E-06 8.2E-11 86.4 13.5 180 22-235 18-221 (233)
67 PF14580 LRR_9: Leucine-rich r 98.4 3.3E-07 7.1E-12 92.5 5.5 87 436-525 9-97 (175)
68 PRK14962 DNA polymerase III su 98.4 2.6E-05 5.6E-10 92.1 21.7 188 23-237 9-221 (472)
69 PRK15386 type III secretion pr 98.3 2.1E-06 4.5E-11 96.9 11.1 61 633-698 51-111 (426)
70 PRK05564 DNA polymerase III su 98.3 1.4E-05 3.1E-10 90.4 18.0 179 28-235 4-190 (313)
71 PRK13341 recombination factor 98.3 2E-05 4.4E-10 97.3 20.5 174 23-230 23-212 (725)
72 PRK14957 DNA polymerase III su 98.3 1.1E-05 2.4E-10 96.0 16.9 185 23-235 11-221 (546)
73 PF13191 AAA_16: AAA ATPase do 98.3 2.2E-06 4.9E-11 89.2 9.9 50 29-78 1-51 (185)
74 PRK12323 DNA polymerase III su 98.3 7.1E-06 1.5E-10 97.2 14.8 203 23-233 11-223 (700)
75 PF13173 AAA_14: AAA domain 98.3 1.7E-06 3.6E-11 83.9 8.0 121 52-196 3-127 (128)
76 PRK09112 DNA polymerase III su 98.3 7.4E-06 1.6E-10 93.0 14.5 200 22-236 17-241 (351)
77 PRK08691 DNA polymerase III su 98.3 7.6E-06 1.7E-10 98.2 15.0 203 23-234 11-219 (709)
78 TIGR02397 dnaX_nterm DNA polym 98.3 1E-05 2.2E-10 93.9 16.0 187 23-236 9-219 (355)
79 KOG1909 Ran GTPase-activating 98.3 1.7E-07 3.7E-12 100.2 1.0 225 397-647 24-283 (382)
80 PRK15386 type III secretion pr 98.3 2.2E-06 4.7E-11 96.7 9.4 157 678-882 49-213 (426)
81 COG1474 CDC6 Cdc6-related prot 98.3 2.7E-05 5.9E-10 88.7 17.8 251 22-287 11-291 (366)
82 PRK07994 DNA polymerase III su 98.3 1.7E-05 3.7E-10 95.8 16.7 199 23-234 11-219 (647)
83 PF14516 AAA_35: AAA-like doma 98.3 0.00031 6.7E-09 79.9 26.2 211 22-242 5-246 (331)
84 cd00009 AAA The AAA+ (ATPases 98.2 7.5E-06 1.6E-10 81.4 11.6 123 31-173 1-131 (151)
85 PRK14955 DNA polymerase III su 98.2 1.2E-05 2.7E-10 93.8 15.0 203 23-234 11-227 (397)
86 PRK03992 proteasome-activating 98.2 1.9E-05 4E-10 91.8 16.3 174 26-228 129-336 (389)
87 PRK06645 DNA polymerase III su 98.2 3.1E-05 6.8E-10 91.7 18.0 195 23-232 16-226 (507)
88 PRK07940 DNA polymerase III su 98.2 3E-05 6.5E-10 89.3 17.4 179 28-235 5-213 (394)
89 PRK08727 hypothetical protein; 98.2 3.1E-05 6.8E-10 83.4 15.9 172 26-232 17-201 (233)
90 PF13401 AAA_22: AAA domain; P 98.2 5.1E-06 1.1E-10 81.0 9.0 113 51-171 4-125 (131)
91 PRK14964 DNA polymerase III su 98.2 3.3E-05 7.2E-10 90.6 17.1 182 24-232 9-214 (491)
92 TIGR00678 holB DNA polymerase 98.2 3.9E-05 8.4E-10 80.0 15.9 90 133-231 95-187 (188)
93 PRK08903 DnaA regulatory inact 98.2 2E-05 4.3E-10 85.0 13.9 179 23-239 13-203 (227)
94 PRK14954 DNA polymerase III su 98.2 2.5E-05 5.4E-10 94.7 15.8 199 23-230 11-223 (620)
95 KOG2028 ATPase related to the 98.2 7.4E-06 1.6E-10 87.8 9.7 154 22-203 132-293 (554)
96 PRK05896 DNA polymerase III su 98.2 1.8E-05 3.9E-10 94.2 14.0 193 23-230 11-215 (605)
97 PRK14970 DNA polymerase III su 98.1 4.2E-05 9.2E-10 88.9 16.4 185 23-233 12-207 (367)
98 PRK08084 DNA replication initi 98.1 4.7E-05 1E-09 82.1 15.5 174 28-236 22-210 (235)
99 PRK14951 DNA polymerase III su 98.1 5E-05 1.1E-09 91.7 17.2 198 24-233 12-223 (618)
100 PRK14958 DNA polymerase III su 98.1 7.6E-05 1.6E-09 89.2 18.5 185 23-233 11-218 (509)
101 PRK09087 hypothetical protein; 98.1 5.9E-05 1.3E-09 80.5 15.4 140 51-236 44-196 (226)
102 KOG2120 SCF ubiquitin ligase, 98.1 3.9E-08 8.5E-13 102.2 -8.5 105 635-739 186-297 (419)
103 PRK14952 DNA polymerase III su 98.1 0.00013 2.8E-09 87.9 19.8 198 24-235 9-220 (584)
104 PHA02544 44 clamp loader, smal 98.1 3.4E-05 7.3E-10 87.9 13.9 152 24-202 17-171 (316)
105 KOG2120 SCF ubiquitin ligase, 98.1 1.2E-07 2.7E-12 98.6 -5.6 174 448-621 187-374 (419)
106 PRK14969 DNA polymerase III su 98.1 3.9E-05 8.4E-10 92.3 14.5 181 23-230 11-215 (527)
107 PLN03150 hypothetical protein; 98.1 8.4E-06 1.8E-10 100.8 9.1 111 707-841 420-533 (623)
108 PRK14959 DNA polymerase III su 98.0 7.9E-05 1.7E-09 89.3 16.1 198 23-239 11-225 (624)
109 PRK07764 DNA polymerase III su 98.0 0.00016 3.4E-09 90.7 19.3 195 23-232 10-218 (824)
110 PRK09111 DNA polymerase III su 98.0 0.00012 2.6E-09 88.7 17.7 203 23-235 19-233 (598)
111 PRK07133 DNA polymerase III su 98.0 7.6E-05 1.6E-09 90.8 15.8 196 23-235 13-220 (725)
112 PRK06305 DNA polymerase III su 98.0 0.00011 2.3E-09 86.9 16.5 193 23-230 12-217 (451)
113 PRK14950 DNA polymerase III su 98.0 7.6E-05 1.6E-09 91.5 15.3 200 23-236 11-222 (585)
114 PF00308 Bac_DnaA: Bacterial d 98.0 0.00013 2.9E-09 77.6 15.2 183 28-234 8-207 (219)
115 TIGR02639 ClpA ATP-dependent C 98.0 0.00011 2.4E-09 92.7 17.1 158 23-204 177-358 (731)
116 PRK08451 DNA polymerase III su 98.0 8E-05 1.7E-09 88.3 14.6 199 23-235 9-218 (535)
117 TIGR02903 spore_lon_C ATP-depe 98.0 5.7E-05 1.2E-09 92.7 13.9 208 24-238 150-398 (615)
118 PRK05642 DNA replication initi 98.0 0.00024 5.1E-09 76.6 17.0 153 52-237 46-210 (234)
119 PTZ00361 26 proteosome regulat 98.0 5.5E-05 1.2E-09 87.9 12.8 158 25-206 180-369 (438)
120 TIGR02881 spore_V_K stage V sp 98.0 6.8E-05 1.5E-09 82.5 13.0 156 28-205 6-192 (261)
121 PRK14087 dnaA chromosomal repl 98.0 0.00015 3.4E-09 85.5 16.7 169 51-239 141-323 (450)
122 PRK14953 DNA polymerase III su 98.0 0.00022 4.8E-09 84.7 18.0 195 23-235 11-220 (486)
123 KOG4341 F-box protein containi 97.9 3.9E-07 8.5E-12 99.6 -5.4 229 465-693 160-413 (483)
124 KOG2982 Uncharacterized conser 97.9 3.8E-06 8.2E-11 87.8 1.9 229 610-861 45-285 (418)
125 KOG2543 Origin recognition com 97.9 0.00013 2.8E-09 79.6 13.5 170 26-203 4-192 (438)
126 TIGR03689 pup_AAA proteasome A 97.9 0.00024 5.2E-09 83.8 16.9 160 26-204 180-378 (512)
127 PRK14948 DNA polymerase III su 97.9 0.00017 3.7E-09 88.1 16.0 201 23-235 11-222 (620)
128 TIGR03345 VI_ClpV1 type VI sec 97.9 0.00018 4E-09 91.3 16.8 158 23-203 182-362 (852)
129 PTZ00454 26S protease regulato 97.9 0.00021 4.5E-09 82.7 15.8 178 24-229 141-351 (398)
130 PLN03150 hypothetical protein; 97.9 2.5E-05 5.3E-10 96.7 8.8 105 612-716 420-526 (623)
131 PRK14971 DNA polymerase III su 97.9 0.00066 1.4E-08 83.1 20.3 201 23-232 12-219 (614)
132 PF13855 LRR_8: Leucine rich r 97.9 1.1E-05 2.5E-10 66.5 3.3 59 775-834 1-60 (61)
133 KOG0989 Replication factor C, 97.8 4.5E-05 9.8E-10 80.9 8.2 194 23-234 31-230 (346)
134 PRK06647 DNA polymerase III su 97.8 0.00054 1.2E-08 82.8 18.5 197 23-234 11-219 (563)
135 KOG2227 Pre-initiation complex 97.8 0.00071 1.5E-08 76.0 17.4 173 26-204 148-338 (529)
136 PRK14088 dnaA chromosomal repl 97.8 0.00043 9.2E-09 81.7 16.9 161 51-234 130-304 (440)
137 PRK05563 DNA polymerase III su 97.8 0.00067 1.5E-08 82.3 18.7 195 23-232 11-217 (559)
138 TIGR02880 cbbX_cfxQ probable R 97.8 0.00065 1.4E-08 75.4 16.6 169 5-205 9-209 (284)
139 KOG0531 Protein phosphatase 1, 97.8 3.6E-06 7.7E-11 99.5 -1.8 33 636-668 234-266 (414)
140 CHL00095 clpC Clp protease ATP 97.8 0.00023 4.9E-09 91.0 14.3 153 27-202 178-352 (821)
141 PRK00149 dnaA chromosomal repl 97.7 0.0005 1.1E-08 82.1 16.3 181 30-234 125-321 (450)
142 PRK07399 DNA polymerase III su 97.7 0.0012 2.7E-08 74.0 17.9 195 28-236 4-222 (314)
143 PRK06620 hypothetical protein; 97.7 0.00031 6.8E-09 74.3 12.4 135 52-232 45-186 (214)
144 PF05673 DUF815: Protein of un 97.7 0.0014 3E-08 68.8 16.8 54 24-78 23-79 (249)
145 PRK10865 protein disaggregatio 97.7 0.0006 1.3E-08 87.0 16.7 159 23-204 173-354 (857)
146 PRK05707 DNA polymerase III su 97.7 0.0011 2.3E-08 74.9 16.7 95 134-235 107-203 (328)
147 TIGR03346 chaperone_ClpB ATP-d 97.7 0.00056 1.2E-08 87.8 16.1 158 23-204 168-349 (852)
148 TIGR00362 DnaA chromosomal rep 97.7 0.00078 1.7E-08 79.4 16.1 159 51-233 136-308 (405)
149 KOG0991 Replication factor C, 97.7 0.00034 7.4E-09 70.9 10.8 52 23-76 22-73 (333)
150 cd01128 rho_factor Transcripti 97.7 4.2E-05 9.1E-10 82.3 4.7 93 51-146 16-115 (249)
151 COG2255 RuvB Holliday junction 97.7 0.00048 1E-08 72.5 12.2 267 23-328 21-316 (332)
152 KOG0531 Protein phosphatase 1, 97.7 9.3E-06 2E-10 95.9 -0.4 167 425-597 96-266 (414)
153 PRK14965 DNA polymerase III su 97.6 0.00061 1.3E-08 83.1 15.1 198 23-235 11-221 (576)
154 CHL00181 cbbX CbbX; Provisiona 97.6 0.0012 2.6E-08 73.2 16.2 156 29-206 24-211 (287)
155 PRK12422 chromosomal replicati 97.6 0.00091 2E-08 78.7 15.5 153 52-228 142-306 (445)
156 CHL00176 ftsH cell division pr 97.6 0.00078 1.7E-08 82.4 15.3 175 26-227 181-386 (638)
157 KOG1859 Leucine-rich repeat pr 97.6 1.2E-06 2.6E-11 101.4 -8.6 175 398-575 104-291 (1096)
158 PF00004 AAA: ATPase family as 97.5 0.00057 1.2E-08 66.5 10.7 23 54-76 1-23 (132)
159 TIGR01241 FtsH_fam ATP-depende 97.5 0.00095 2.1E-08 80.7 14.7 173 27-228 54-259 (495)
160 PRK14086 dnaA chromosomal repl 97.5 0.0024 5.1E-08 76.5 17.4 155 52-230 315-483 (617)
161 CHL00195 ycf46 Ycf46; Provisio 97.5 0.0018 4E-08 76.7 16.2 175 27-229 227-429 (489)
162 PF13855 LRR_8: Leucine rich r 97.5 9.2E-05 2E-09 61.1 3.7 57 635-691 2-59 (61)
163 PRK09376 rho transcription ter 97.5 8.3E-05 1.8E-09 83.2 4.5 94 51-147 169-269 (416)
164 PRK08116 hypothetical protein; 97.5 0.00053 1.2E-08 75.2 10.7 102 52-172 115-221 (268)
165 COG1222 RPT1 ATP-dependent 26S 97.4 0.0014 3.1E-08 71.3 12.6 170 28-229 151-357 (406)
166 PRK08769 DNA polymerase III su 97.4 0.0042 9.1E-08 69.4 16.7 96 133-236 112-209 (319)
167 KOG1859 Leucine-rich repeat pr 97.4 1.5E-06 3.3E-11 100.6 -10.7 101 635-739 165-265 (1096)
168 COG3267 ExeA Type II secretory 97.4 0.0074 1.6E-07 63.2 16.6 199 29-237 29-247 (269)
169 PRK08058 DNA polymerase III su 97.4 0.0036 7.9E-08 71.1 16.0 163 28-203 5-181 (329)
170 TIGR00767 rho transcription te 97.4 0.00022 4.7E-09 80.5 5.6 93 51-146 168-267 (415)
171 PF12799 LRR_4: Leucine Rich r 97.4 0.00015 3.3E-09 54.8 3.0 39 801-840 2-40 (44)
172 KOG2982 Uncharacterized conser 97.4 3.6E-05 7.9E-10 80.6 -0.5 41 773-813 222-262 (418)
173 PRK11034 clpA ATP-dependent Cl 97.4 0.0004 8.6E-09 86.5 8.4 154 28-204 186-362 (758)
174 PRK12377 putative replication 97.3 0.0022 4.7E-08 69.1 12.7 36 51-86 101-136 (248)
175 TIGR01243 CDC48 AAA family ATP 97.3 0.0038 8.3E-08 79.3 16.6 173 28-229 453-657 (733)
176 TIGR00602 rad24 checkpoint pro 97.3 0.0015 3.2E-08 79.4 11.8 54 23-76 79-135 (637)
177 TIGR01243 CDC48 AAA family ATP 97.3 0.0034 7.4E-08 79.7 15.5 177 27-231 177-383 (733)
178 PRK06871 DNA polymerase III su 97.3 0.0066 1.4E-07 68.0 15.8 179 36-232 10-200 (325)
179 PF10443 RNA12: RNA12 protein; 97.3 0.088 1.9E-06 60.0 24.5 104 134-241 148-284 (431)
180 COG1373 Predicted ATPase (AAA+ 97.2 0.0033 7.2E-08 73.2 13.7 150 53-235 39-192 (398)
181 PLN00020 ribulose bisphosphate 97.2 0.0078 1.7E-07 66.9 15.3 154 49-230 146-333 (413)
182 PRK07952 DNA replication prote 97.2 0.002 4.4E-08 69.2 10.5 49 37-85 85-133 (244)
183 COG0593 DnaA ATPase involved i 97.2 0.006 1.3E-07 69.6 14.7 136 50-206 112-259 (408)
184 TIGR00763 lon ATP-dependent pr 97.2 0.0031 6.7E-08 80.3 13.8 51 29-79 321-375 (775)
185 COG0466 Lon ATP-dependent Lon 97.2 0.0022 4.8E-08 76.0 11.3 161 28-205 323-509 (782)
186 PRK08181 transposase; Validate 97.1 0.0022 4.7E-08 70.0 10.1 35 52-86 107-141 (269)
187 smart00382 AAA ATPases associa 97.1 0.0015 3.3E-08 64.1 8.1 28 52-79 3-30 (148)
188 PF12799 LRR_4: Leucine Rich r 97.1 0.00046 1E-08 52.2 3.3 40 775-816 1-40 (44)
189 PRK10536 hypothetical protein; 97.1 0.0029 6.3E-08 67.3 10.0 137 28-173 55-214 (262)
190 PRK06090 DNA polymerase III su 97.1 0.037 8.1E-07 61.9 19.2 179 36-235 11-201 (319)
191 PRK07993 DNA polymerase III su 97.0 0.019 4.2E-07 65.0 17.0 180 35-233 9-202 (334)
192 PF07693 KAP_NTPase: KAP famil 97.0 0.029 6.2E-07 64.2 18.5 77 34-110 2-81 (325)
193 KOG3665 ZYG-1-like serine/thre 97.0 0.00023 5.1E-09 87.7 0.7 126 538-664 147-282 (699)
194 KOG3665 ZYG-1-like serine/thre 96.9 0.00046 1E-08 85.2 2.9 132 586-718 122-263 (699)
195 PRK09183 transposase/IS protei 96.9 0.0028 6.1E-08 69.2 8.5 27 52-78 103-129 (259)
196 TIGR02902 spore_lonB ATP-depen 96.9 0.011 2.4E-07 71.6 14.3 50 23-74 60-109 (531)
197 PRK06964 DNA polymerase III su 96.9 0.053 1.1E-06 61.3 18.7 92 133-235 131-225 (342)
198 COG2812 DnaX DNA polymerase II 96.9 0.0047 1E-07 72.6 10.4 191 24-228 12-213 (515)
199 PF01695 IstB_IS21: IstB-like 96.9 0.002 4.3E-08 66.1 6.5 36 51-86 47-82 (178)
200 PF05621 TniB: Bacterial TniB 96.9 0.023 5E-07 61.9 14.7 208 27-235 33-261 (302)
201 KOG1644 U2-associated snRNP A' 96.8 0.0024 5.2E-08 64.0 6.5 57 445-502 41-98 (233)
202 KOG0730 AAA+-type ATPase [Post 96.8 0.019 4.1E-07 67.7 14.8 153 28-206 434-617 (693)
203 PRK11331 5-methylcytosine-spec 96.8 0.0048 1.1E-07 71.0 9.9 46 28-77 175-220 (459)
204 PRK06835 DNA replication prote 96.8 0.0025 5.4E-08 71.8 7.3 35 52-86 184-218 (329)
205 KOG0744 AAA+-type ATPase [Post 96.8 0.0068 1.5E-07 64.9 9.9 36 51-86 177-216 (423)
206 TIGR02640 gas_vesic_GvpN gas v 96.7 0.017 3.7E-07 63.5 13.1 37 36-76 10-46 (262)
207 COG1223 Predicted ATPase (AAA+ 96.7 0.029 6.3E-07 58.4 13.4 171 27-228 120-318 (368)
208 PRK10787 DNA-binding ATP-depen 96.7 0.0092 2E-07 75.2 11.9 183 4-204 286-506 (784)
209 KOG0733 Nuclear AAA ATPase (VC 96.7 0.02 4.3E-07 66.6 13.3 154 27-204 189-374 (802)
210 KOG0735 AAA+-type ATPase [Post 96.7 0.017 3.6E-07 68.3 12.7 162 51-234 431-615 (952)
211 PRK06526 transposase; Provisio 96.7 0.0035 7.6E-08 68.0 7.0 28 51-78 98-125 (254)
212 PRK08939 primosomal protein Dn 96.7 0.0081 1.8E-07 67.1 10.1 54 33-86 136-191 (306)
213 KOG0741 AAA+-type ATPase [Post 96.7 0.017 3.7E-07 65.8 12.4 132 49-203 536-685 (744)
214 PRK06921 hypothetical protein; 96.6 0.0027 5.9E-08 69.5 5.7 36 51-86 117-153 (266)
215 PF13177 DNA_pol3_delta2: DNA 96.6 0.0087 1.9E-07 60.4 8.7 134 32-191 1-161 (162)
216 KOG2004 Mitochondrial ATP-depe 96.5 0.014 3E-07 69.1 10.9 161 28-205 411-597 (906)
217 COG1484 DnaC DNA replication p 96.5 0.011 2.3E-07 64.4 9.5 37 50-86 104-140 (254)
218 PRK09361 radB DNA repair and r 96.5 0.0093 2E-07 64.1 8.9 49 38-86 10-58 (225)
219 COG0470 HolB ATPase involved i 96.5 0.028 6.2E-07 64.2 13.5 149 29-194 2-171 (325)
220 cd01133 F1-ATPase_beta F1 ATP 96.5 0.01 2.2E-07 64.3 8.9 41 51-91 69-109 (274)
221 PRK04132 replication factor C 96.5 0.026 5.5E-07 70.8 13.6 157 56-234 569-730 (846)
222 KOG2035 Replication factor C, 96.5 0.075 1.6E-06 56.1 14.7 214 24-255 9-259 (351)
223 PRK10733 hflB ATP-dependent me 96.5 0.035 7.5E-07 69.1 14.8 155 28-206 152-337 (644)
224 PRK08699 DNA polymerase III su 96.5 0.083 1.8E-06 59.7 16.5 86 136-231 115-202 (325)
225 PF04665 Pox_A32: Poxvirus A32 96.5 0.088 1.9E-06 56.0 15.5 34 53-86 15-48 (241)
226 COG2607 Predicted ATPase (AAA+ 96.5 0.019 4.1E-07 59.3 10.0 53 28-81 60-115 (287)
227 PHA00729 NTP-binding motif con 96.4 0.018 4E-07 60.4 10.3 27 50-76 16-42 (226)
228 PF02562 PhoH: PhoH-like prote 96.4 0.019 4.1E-07 59.6 10.1 130 32-173 4-157 (205)
229 PF07728 AAA_5: AAA domain (dy 96.4 0.002 4.3E-08 63.5 2.6 22 54-75 2-23 (139)
230 KOG0731 AAA+-type ATPase conta 96.4 0.089 1.9E-06 64.2 16.8 182 27-234 310-523 (774)
231 KOG1514 Origin recognition com 96.3 0.085 1.8E-06 62.8 15.8 201 25-238 393-624 (767)
232 TIGR02639 ClpA ATP-dependent C 96.3 0.11 2.4E-06 66.0 18.2 50 27-76 453-509 (731)
233 PRK00771 signal recognition pa 96.3 0.044 9.5E-07 64.1 13.4 29 50-78 94-122 (437)
234 cd00561 CobA_CobO_BtuR ATP:cor 96.3 0.013 2.7E-07 58.3 7.6 116 52-173 3-139 (159)
235 PRK11889 flhF flagellar biosyn 96.3 0.034 7.3E-07 62.9 11.7 29 50-78 240-268 (436)
236 PRK14974 cell division protein 96.3 0.055 1.2E-06 61.0 13.5 29 50-78 139-167 (336)
237 cd01120 RecA-like_NTPases RecA 96.3 0.0096 2.1E-07 60.2 7.0 34 53-86 1-34 (165)
238 PF13207 AAA_17: AAA domain; P 96.2 0.0037 8.1E-08 59.7 3.6 23 53-75 1-23 (121)
239 PRK10865 protein disaggregatio 96.2 0.027 5.8E-07 72.3 12.2 50 27-76 567-623 (857)
240 COG1618 Predicted nucleotide k 96.2 0.0043 9.4E-08 60.0 3.8 39 52-90 6-46 (179)
241 cd01129 PulE-GspE PulE/GspE Th 96.2 0.019 4.1E-07 63.0 9.2 101 36-153 68-168 (264)
242 PRK05541 adenylylsulfate kinas 96.2 0.01 2.2E-07 61.1 6.7 37 50-86 6-42 (176)
243 PRK11034 clpA ATP-dependent Cl 96.2 0.065 1.4E-06 67.2 14.9 49 28-76 458-513 (758)
244 TIGR03345 VI_ClpV1 type VI sec 96.2 0.037 8.1E-07 70.7 13.1 50 27-76 565-621 (852)
245 KOG1644 U2-associated snRNP A' 96.2 0.01 2.2E-07 59.7 6.2 81 468-550 41-124 (233)
246 KOG1947 Leucine rich repeat pr 96.2 0.00082 1.8E-08 81.6 -1.8 81 771-860 358-443 (482)
247 COG5238 RNA1 Ran GTPase-activa 96.2 0.0012 2.6E-08 68.7 -0.3 17 797-813 211-227 (388)
248 smart00763 AAA_PrkA PrkA AAA d 96.1 0.0045 9.7E-08 69.4 4.0 48 29-76 52-103 (361)
249 cd01393 recA_like RecA is a b 96.1 0.026 5.7E-07 60.7 9.9 49 38-86 6-60 (226)
250 cd01394 radB RadB. The archaea 96.1 0.022 4.7E-07 60.9 9.2 50 37-86 5-54 (218)
251 PF00158 Sigma54_activat: Sigm 96.1 0.018 3.9E-07 58.3 8.0 46 30-75 1-46 (168)
252 TIGR02237 recomb_radB DNA repa 96.1 0.0077 1.7E-07 64.0 5.5 45 42-86 3-47 (209)
253 KOG1947 Leucine rich repeat pr 96.1 0.00059 1.3E-08 82.9 -3.5 34 468-501 187-223 (482)
254 PRK12608 transcription termina 96.0 0.021 4.6E-07 64.4 8.7 92 52-146 134-232 (380)
255 TIGR03346 chaperone_ClpB ATP-d 96.0 0.046 1E-06 70.4 13.1 52 27-78 564-622 (852)
256 PRK07667 uridine kinase; Provi 96.0 0.012 2.5E-07 61.5 6.4 42 37-78 3-44 (193)
257 TIGR02012 tigrfam_recA protein 96.0 0.033 7.2E-07 62.1 10.1 79 8-86 5-90 (321)
258 cd00983 recA RecA is a bacter 96.0 0.033 7.3E-07 62.1 10.0 79 8-86 5-90 (325)
259 PRK08118 topology modulation p 96.0 0.0064 1.4E-07 61.7 4.1 25 52-76 2-26 (167)
260 PRK06696 uridine kinase; Valid 96.0 0.011 2.4E-07 63.4 6.1 46 33-78 3-49 (223)
261 KOG2228 Origin recognition com 96.0 0.1 2.2E-06 56.9 12.8 177 26-204 22-219 (408)
262 cd01131 PilT Pilus retraction 95.9 0.046 1E-06 57.3 10.3 109 52-174 2-111 (198)
263 PRK12723 flagellar biosynthesi 95.9 0.092 2E-06 60.4 13.5 27 50-76 173-199 (388)
264 TIGR00064 ftsY signal recognit 95.9 0.064 1.4E-06 59.0 11.8 30 49-78 70-99 (272)
265 COG0464 SpoVK ATPases of the A 95.9 0.078 1.7E-06 64.4 13.7 154 28-206 242-425 (494)
266 PF14532 Sigma54_activ_2: Sigm 95.9 0.0064 1.4E-07 59.7 3.5 46 31-76 1-46 (138)
267 PRK12724 flagellar biosynthesi 95.9 0.12 2.7E-06 59.3 14.1 25 51-75 223-247 (432)
268 CHL00095 clpC Clp protease ATP 95.9 0.081 1.8E-06 68.0 14.2 50 27-76 508-564 (821)
269 KOG2739 Leucine-rich acidic nu 95.9 0.0057 1.2E-07 64.2 3.0 87 771-858 61-157 (260)
270 KOG0733 Nuclear AAA ATPase (VC 95.8 0.076 1.6E-06 62.0 12.1 128 51-205 545-693 (802)
271 KOG0734 AAA+-type ATPase conta 95.8 0.1 2.2E-06 60.0 12.7 150 28-205 304-485 (752)
272 PRK04296 thymidine kinase; Pro 95.8 0.014 3E-07 60.7 5.8 112 52-173 3-117 (190)
273 cd00544 CobU Adenosylcobinamid 95.8 0.018 3.9E-07 58.3 6.4 80 53-143 1-82 (169)
274 COG0542 clpA ATP-binding subun 95.8 0.035 7.6E-07 68.2 9.8 155 27-203 169-345 (786)
275 KOG4579 Leucine-rich repeat (L 95.8 0.00068 1.5E-08 63.4 -3.6 103 612-739 29-134 (177)
276 PF03215 Rad17: Rad17 cell cyc 95.8 0.047 1E-06 65.3 10.8 52 24-75 15-69 (519)
277 PF00448 SRP54: SRP54-type pro 95.8 0.019 4.2E-07 59.7 6.7 28 51-78 1-28 (196)
278 PRK09354 recA recombinase A; P 95.8 0.053 1.1E-06 61.1 10.4 79 8-86 10-95 (349)
279 COG5238 RNA1 Ran GTPase-activa 95.8 0.0075 1.6E-07 63.0 3.4 150 459-622 82-254 (388)
280 PRK06067 flagellar accessory p 95.8 0.037 8.1E-07 59.8 9.0 50 37-86 11-60 (234)
281 PRK06762 hypothetical protein; 95.7 0.039 8.5E-07 56.1 8.7 24 52-75 3-26 (166)
282 COG0542 clpA ATP-binding subun 95.7 0.049 1.1E-06 66.9 10.6 118 28-157 491-618 (786)
283 cd01121 Sms Sms (bacterial rad 95.7 0.042 9.2E-07 63.1 9.4 50 37-86 68-117 (372)
284 KOG0728 26S proteasome regulat 95.7 0.22 4.7E-06 51.6 13.2 154 23-204 141-331 (404)
285 PRK07261 topology modulation p 95.6 0.031 6.8E-07 57.0 7.4 23 53-75 2-24 (171)
286 TIGR03877 thermo_KaiC_1 KaiC d 95.6 0.056 1.2E-06 58.5 9.7 50 37-86 7-56 (237)
287 KOG0651 26S proteasome regulat 95.6 0.065 1.4E-06 57.5 9.5 29 51-79 166-194 (388)
288 KOG0727 26S proteasome regulat 95.6 0.31 6.6E-06 50.6 13.8 146 29-204 156-339 (408)
289 PF00154 RecA: recA bacterial 95.5 0.092 2E-06 58.5 11.1 133 9-147 3-144 (322)
290 TIGR01359 UMP_CMP_kin_fam UMP- 95.5 0.078 1.7E-06 54.9 10.1 23 53-75 1-23 (183)
291 KOG1969 DNA replication checkp 95.5 0.039 8.5E-07 65.7 8.3 28 49-76 324-351 (877)
292 PRK15429 formate hydrogenlyase 95.5 0.049 1.1E-06 68.8 10.0 50 26-75 374-423 (686)
293 cd01123 Rad51_DMC1_radA Rad51_ 95.5 0.043 9.3E-07 59.5 8.3 49 38-86 6-60 (235)
294 COG4088 Predicted nucleotide k 95.5 0.034 7.5E-07 56.0 6.7 29 52-80 2-30 (261)
295 TIGR01817 nifA Nif-specific re 95.5 0.12 2.6E-06 63.4 13.1 50 26-75 194-243 (534)
296 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.5 0.047 1E-06 53.9 7.8 99 51-175 26-130 (144)
297 PF00437 T2SE: Type II/IV secr 95.4 0.032 7E-07 61.8 7.3 127 28-172 104-232 (270)
298 PRK13531 regulatory ATPase Rav 95.4 0.028 6E-07 65.5 6.8 47 27-77 19-65 (498)
299 PF13671 AAA_33: AAA domain; P 95.4 0.053 1.1E-06 53.5 8.1 24 53-76 1-24 (143)
300 TIGR00959 ffh signal recogniti 95.4 0.17 3.7E-06 59.1 13.1 26 51-76 99-124 (428)
301 PF01583 APS_kinase: Adenylyls 95.3 0.023 4.9E-07 56.2 4.9 35 52-86 3-37 (156)
302 PF13604 AAA_30: AAA domain; P 95.3 0.095 2.1E-06 54.8 10.0 38 38-78 8-45 (196)
303 COG0465 HflB ATP-dependent Zn 95.3 0.095 2.1E-06 62.7 10.9 178 27-231 149-357 (596)
304 PRK08233 hypothetical protein; 95.3 0.05 1.1E-06 56.2 7.9 26 51-76 3-28 (182)
305 COG2884 FtsE Predicted ATPase 95.3 0.12 2.5E-06 51.8 9.7 58 121-178 142-203 (223)
306 KOG0739 AAA+-type ATPase [Post 95.3 0.33 7.2E-06 51.8 13.5 172 28-228 133-334 (439)
307 PRK10867 signal recognition pa 95.3 0.23 5E-06 58.1 13.9 41 38-78 80-127 (433)
308 cd02027 APSK Adenosine 5'-phos 95.3 0.072 1.6E-06 53.0 8.4 24 53-76 1-24 (149)
309 COG1121 ZnuC ABC-type Mn/Zn tr 95.3 0.032 7E-07 59.5 6.1 52 124-177 147-204 (254)
310 PF13238 AAA_18: AAA domain; P 95.2 0.015 3.2E-07 56.1 3.4 22 54-75 1-22 (129)
311 TIGR02858 spore_III_AA stage I 95.2 0.077 1.7E-06 58.1 9.0 116 49-175 109-232 (270)
312 cd03223 ABCD_peroxisomal_ALDP 95.2 0.066 1.4E-06 54.4 8.0 115 51-175 27-151 (166)
313 CHL00206 ycf2 Ycf2; Provisiona 95.2 0.1 2.2E-06 69.3 11.1 27 50-76 1629-1655(2281)
314 PRK04328 hypothetical protein; 95.2 0.064 1.4E-06 58.4 8.3 49 38-86 10-58 (249)
315 TIGR01425 SRP54_euk signal rec 95.1 0.27 5.8E-06 57.1 13.6 29 50-78 99-127 (429)
316 TIGR03574 selen_PSTK L-seryl-t 95.1 0.038 8.3E-07 60.3 6.6 26 53-78 1-26 (249)
317 PF08433 KTI12: Chromatin asso 95.1 0.044 9.4E-07 60.0 6.8 26 52-77 2-27 (270)
318 PRK05703 flhF flagellar biosyn 95.1 0.21 4.6E-06 58.6 12.9 26 51-76 221-246 (424)
319 PRK07132 DNA polymerase III su 95.1 2 4.4E-05 47.8 19.9 168 37-235 5-185 (299)
320 PTZ00494 tuzin-like protein; P 95.1 1.7 3.6E-05 49.6 18.7 180 9-204 345-544 (664)
321 PF00406 ADK: Adenylate kinase 95.1 0.078 1.7E-06 52.9 8.0 88 56-154 1-94 (151)
322 cd03222 ABC_RNaseL_inhibitor T 95.1 0.061 1.3E-06 55.0 7.3 103 52-176 26-136 (177)
323 KOG1970 Checkpoint RAD17-RFC c 95.1 0.075 1.6E-06 61.4 8.5 48 28-75 82-134 (634)
324 COG1066 Sms Predicted ATP-depe 95.0 0.1 2.2E-06 58.6 9.3 51 35-86 77-127 (456)
325 TIGR02238 recomb_DMC1 meiotic 95.0 0.1 2.2E-06 58.7 9.5 37 37-73 82-118 (313)
326 PRK05800 cobU adenosylcobinami 95.0 0.037 8E-07 56.2 5.5 23 53-75 3-25 (170)
327 cd03228 ABCC_MRP_Like The MRP 95.0 0.12 2.6E-06 52.8 9.3 118 51-176 28-159 (171)
328 KOG4579 Leucine-rich repeat (L 95.0 0.0025 5.5E-08 59.7 -2.7 78 425-502 54-133 (177)
329 KOG0743 AAA+-type ATPase [Post 95.0 0.47 1E-05 54.2 14.4 150 51-239 235-413 (457)
330 KOG0652 26S proteasome regulat 95.0 0.54 1.2E-05 49.1 13.6 164 26-219 169-371 (424)
331 PF07726 AAA_3: ATPase family 95.0 0.015 3.2E-07 54.8 2.3 28 54-81 2-29 (131)
332 cd03238 ABC_UvrA The excision 95.0 0.063 1.4E-06 54.9 7.0 23 51-73 21-43 (176)
333 PRK08356 hypothetical protein; 94.9 0.22 4.7E-06 52.1 11.3 21 52-72 6-26 (195)
334 PF03308 ArgK: ArgK protein; 94.9 0.06 1.3E-06 57.1 6.9 43 36-78 14-56 (266)
335 PRK08533 flagellar accessory p 94.9 0.12 2.7E-06 55.4 9.5 48 39-86 12-59 (230)
336 COG0468 RecA RecA/RadA recombi 94.9 0.14 3E-06 56.0 9.8 48 39-86 48-95 (279)
337 PF10236 DAP3: Mitochondrial r 94.9 0.42 9E-06 53.8 14.1 48 185-232 258-306 (309)
338 cd01130 VirB11-like_ATPase Typ 94.9 0.024 5.2E-07 58.8 3.8 94 52-153 26-119 (186)
339 COG4608 AppF ABC-type oligopep 94.9 0.052 1.1E-06 58.0 6.2 125 50-177 38-175 (268)
340 PF00485 PRK: Phosphoribulokin 94.8 0.024 5.2E-07 59.3 3.8 26 53-78 1-26 (194)
341 COG0563 Adk Adenylate kinase a 94.8 0.088 1.9E-06 53.8 7.6 22 53-74 2-23 (178)
342 PRK11823 DNA repair protein Ra 94.8 0.11 2.3E-06 61.6 9.4 52 35-86 64-115 (446)
343 COG1875 NYN ribonuclease and A 94.8 0.15 3.3E-06 56.1 9.6 39 32-72 228-266 (436)
344 PRK12726 flagellar biosynthesi 94.8 0.5 1.1E-05 53.6 13.9 37 50-86 205-241 (407)
345 PRK15455 PrkA family serine pr 94.8 0.033 7.1E-07 65.7 4.9 50 28-77 76-129 (644)
346 PTZ00088 adenylate kinase 1; P 94.8 0.083 1.8E-06 56.4 7.6 22 54-75 9-30 (229)
347 TIGR00708 cobA cob(I)alamin ad 94.7 0.14 3.1E-06 51.5 8.6 118 51-173 5-141 (173)
348 PRK14722 flhF flagellar biosyn 94.7 0.41 8.9E-06 54.7 13.2 29 51-79 137-165 (374)
349 cd03247 ABCC_cytochrome_bd The 94.7 0.11 2.4E-06 53.4 8.1 25 52-76 29-53 (178)
350 cd03115 SRP The signal recogni 94.6 0.16 3.6E-06 51.9 9.4 26 53-78 2-27 (173)
351 TIGR01420 pilT_fam pilus retra 94.6 0.17 3.7E-06 58.0 10.4 109 51-173 122-231 (343)
352 KOG0736 Peroxisome assembly fa 94.6 0.67 1.5E-05 56.0 15.0 130 23-176 666-825 (953)
353 KOG2739 Leucine-rich acidic nu 94.6 0.032 6.8E-07 58.8 3.8 68 771-838 87-158 (260)
354 TIGR00416 sms DNA repair prote 94.6 0.13 2.7E-06 61.1 9.3 53 34-86 77-129 (454)
355 TIGR03600 phage_DnaB phage rep 94.6 0.25 5.4E-06 58.6 11.9 56 30-86 174-230 (421)
356 COG1703 ArgK Putative periplas 94.5 0.066 1.4E-06 57.6 6.1 58 37-95 37-94 (323)
357 KOG0729 26S proteasome regulat 94.5 0.41 9E-06 50.1 11.4 53 30-87 179-242 (435)
358 cd02019 NK Nucleoside/nucleoti 94.5 0.03 6.5E-07 47.3 2.8 23 53-75 1-23 (69)
359 PRK03839 putative kinase; Prov 94.5 0.029 6.3E-07 57.9 3.3 24 53-76 2-25 (180)
360 PRK10416 signal recognition pa 94.5 0.39 8.5E-06 54.1 12.5 29 50-78 113-141 (318)
361 TIGR03499 FlhF flagellar biosy 94.5 0.15 3.3E-06 56.6 9.2 28 50-77 193-220 (282)
362 cd01124 KaiC KaiC is a circadi 94.5 0.072 1.6E-06 55.3 6.3 33 54-86 2-34 (187)
363 TIGR02782 TrbB_P P-type conjug 94.5 0.16 3.5E-06 56.7 9.4 89 52-153 133-223 (299)
364 cd03214 ABC_Iron-Siderophores_ 94.4 0.17 3.7E-06 52.2 8.9 122 51-175 25-161 (180)
365 TIGR00150 HI0065_YjeE ATPase, 94.4 0.054 1.2E-06 52.1 4.7 40 36-75 7-46 (133)
366 PF00910 RNA_helicase: RNA hel 94.4 0.025 5.3E-07 52.7 2.2 26 54-79 1-26 (107)
367 PRK05986 cob(I)alamin adenolsy 94.3 0.16 3.5E-06 51.9 8.2 121 51-173 22-159 (191)
368 PRK04040 adenylate kinase; Pro 94.3 0.04 8.8E-07 57.0 3.9 25 52-76 3-27 (188)
369 cd03216 ABC_Carb_Monos_I This 94.3 0.095 2.1E-06 53.0 6.5 113 52-175 27-145 (163)
370 PRK00889 adenylylsulfate kinas 94.3 0.079 1.7E-06 54.4 6.0 27 51-77 4-30 (175)
371 PRK05480 uridine/cytidine kina 94.3 0.04 8.7E-07 58.4 3.9 27 49-75 4-30 (209)
372 TIGR02974 phageshock_pspF psp 94.3 0.064 1.4E-06 60.9 5.8 46 30-75 1-46 (329)
373 PRK00625 shikimate kinase; Pro 94.3 0.034 7.5E-07 56.6 3.2 24 53-76 2-25 (173)
374 cd03246 ABCC_Protease_Secretio 94.3 0.11 2.4E-06 53.1 7.0 25 52-76 29-53 (173)
375 PRK04301 radA DNA repair and r 94.2 0.22 4.7E-06 56.5 10.0 38 38-75 89-126 (317)
376 cd03232 ABC_PDR_domain2 The pl 94.2 0.23 5E-06 51.8 9.5 24 51-74 33-56 (192)
377 PTZ00301 uridine kinase; Provi 94.2 0.041 8.9E-07 57.9 3.7 29 51-79 3-31 (210)
378 COG0572 Udk Uridine kinase [Nu 94.2 0.052 1.1E-06 56.3 4.3 30 49-78 6-35 (218)
379 KOG0730 AAA+-type ATPase [Post 94.2 0.35 7.6E-06 57.5 11.4 172 29-228 185-385 (693)
380 PRK14527 adenylate kinase; Pro 94.1 0.14 3.1E-06 53.3 7.6 26 50-75 5-30 (191)
381 PRK00279 adk adenylate kinase; 94.1 0.17 3.6E-06 53.9 8.3 23 53-75 2-24 (215)
382 TIGR02788 VirB11 P-type DNA tr 94.1 0.11 2.4E-06 58.5 7.3 110 51-173 144-254 (308)
383 TIGR02655 circ_KaiC circadian 94.1 0.12 2.7E-06 62.1 8.0 52 35-86 247-298 (484)
384 PRK00131 aroK shikimate kinase 94.0 0.043 9.3E-07 56.2 3.5 26 51-76 4-29 (175)
385 COG2274 SunT ABC-type bacterio 94.0 0.13 2.9E-06 63.9 8.0 22 52-73 500-521 (709)
386 TIGR03575 selen_PSTK_euk L-ser 93.9 0.11 2.4E-06 58.5 6.7 23 54-76 2-24 (340)
387 TIGR00235 udk uridine kinase. 93.9 0.052 1.1E-06 57.4 3.9 28 49-76 4-31 (207)
388 PRK14528 adenylate kinase; Pro 93.9 0.19 4E-06 52.1 7.9 24 52-75 2-25 (186)
389 TIGR00390 hslU ATP-dependent p 93.9 0.1 2.2E-06 59.8 6.2 51 28-78 12-74 (441)
390 COG4618 ArpD ABC-type protease 93.9 0.13 2.9E-06 59.0 7.1 22 52-73 363-384 (580)
391 TIGR01069 mutS2 MutS2 family p 93.9 0.079 1.7E-06 66.9 6.0 181 51-255 322-521 (771)
392 COG2842 Uncharacterized ATPase 93.8 0.98 2.1E-05 48.9 13.2 122 22-156 66-189 (297)
393 cd03230 ABC_DR_subfamily_A Thi 93.8 0.21 4.5E-06 51.1 8.1 25 51-75 26-50 (173)
394 PF08423 Rad51: Rad51; InterP 93.8 0.1 2.2E-06 57.0 6.0 37 38-74 25-61 (256)
395 cd04121 Rab40 Rab40 subfamily. 93.8 0.29 6.3E-06 50.8 9.2 22 52-73 7-28 (189)
396 PRK14529 adenylate kinase; Pro 93.8 0.25 5.4E-06 52.4 8.7 91 54-152 3-95 (223)
397 cd01122 GP4d_helicase GP4d_hel 93.8 0.44 9.5E-06 52.8 11.2 37 50-86 29-66 (271)
398 PRK05022 anaerobic nitric oxid 93.8 0.11 2.3E-06 63.1 6.8 51 26-76 185-235 (509)
399 PF03969 AFG1_ATPase: AFG1-lik 93.8 0.15 3.2E-06 58.4 7.4 102 50-171 61-167 (362)
400 PRK06547 hypothetical protein; 93.8 0.058 1.3E-06 54.9 3.8 27 49-75 13-39 (172)
401 COG1428 Deoxynucleoside kinase 93.8 0.05 1.1E-06 55.7 3.1 26 51-76 4-29 (216)
402 TIGR01351 adk adenylate kinase 93.8 0.18 3.9E-06 53.5 7.7 22 54-75 2-23 (210)
403 PRK09270 nucleoside triphospha 93.8 0.082 1.8E-06 56.9 5.1 30 49-78 31-60 (229)
404 PRK09519 recA DNA recombinatio 93.7 0.27 5.9E-06 61.1 10.1 79 8-86 10-95 (790)
405 PRK12727 flagellar biosynthesi 93.7 0.27 5.8E-06 58.1 9.5 28 51-78 350-377 (559)
406 TIGR01360 aden_kin_iso1 adenyl 93.7 0.055 1.2E-06 56.2 3.6 26 50-75 2-27 (188)
407 PRK15115 response regulator Gl 93.7 0.89 1.9E-05 54.5 14.3 48 28-75 134-181 (444)
408 PF06068 TIP49: TIP49 C-termin 93.6 0.2 4.3E-06 56.0 7.7 60 25-84 21-83 (398)
409 PRK14526 adenylate kinase; Pro 93.6 0.26 5.5E-06 52.1 8.3 22 54-75 3-24 (211)
410 PRK14723 flhF flagellar biosyn 93.6 0.52 1.1E-05 58.6 12.0 26 51-76 185-210 (767)
411 PRK07276 DNA polymerase III su 93.6 2.9 6.4E-05 46.2 16.8 67 133-201 103-172 (290)
412 smart00534 MUTSac ATPase domai 93.6 0.032 7E-07 57.8 1.5 21 53-73 1-21 (185)
413 cd01428 ADK Adenylate kinase ( 93.6 0.37 7.9E-06 50.3 9.6 22 54-75 2-23 (194)
414 PRK13947 shikimate kinase; Pro 93.6 0.054 1.2E-06 55.3 3.2 25 53-77 3-27 (171)
415 PRK10820 DNA-binding transcrip 93.5 0.51 1.1E-05 57.4 12.0 51 24-74 200-250 (520)
416 cd01125 repA Hexameric Replica 93.5 0.42 9.2E-06 51.8 10.2 23 53-75 3-25 (239)
417 TIGR02533 type_II_gspE general 93.5 0.26 5.6E-06 59.0 9.2 99 37-152 231-329 (486)
418 PF03266 NTPase_1: NTPase; In 93.5 0.074 1.6E-06 53.9 3.9 24 54-77 2-25 (168)
419 COG5635 Predicted NTPase (NACH 93.5 0.56 1.2E-05 60.5 12.8 227 52-287 223-482 (824)
420 PLN02200 adenylate kinase fami 93.5 0.27 5.8E-06 52.9 8.4 26 50-75 42-67 (234)
421 TIGR01447 recD exodeoxyribonuc 93.5 0.46 9.9E-06 58.2 11.3 26 52-77 161-186 (586)
422 PRK11388 DNA-binding transcrip 93.5 1.1 2.4E-05 56.3 15.2 50 26-75 323-372 (638)
423 cd03217 ABC_FeS_Assembly ABC-t 93.4 0.24 5.2E-06 52.1 7.8 24 51-74 26-49 (200)
424 PF07724 AAA_2: AAA domain (Cd 93.4 0.094 2E-06 53.3 4.5 41 51-92 3-44 (171)
425 TIGR02239 recomb_RAD51 DNA rep 93.4 0.31 6.8E-06 54.9 9.1 42 33-74 78-119 (316)
426 cd00227 CPT Chloramphenicol (C 93.4 0.066 1.4E-06 54.9 3.4 25 52-76 3-27 (175)
427 PTZ00035 Rad51 protein; Provis 93.3 0.3 6.4E-06 55.6 8.9 40 36-75 103-142 (337)
428 PRK14531 adenylate kinase; Pro 93.3 0.32 7E-06 50.3 8.5 24 52-75 3-26 (183)
429 PRK09302 circadian clock prote 93.3 0.22 4.7E-06 60.7 8.4 55 32-86 12-67 (509)
430 KOG0737 AAA+-type ATPase [Post 93.3 0.49 1.1E-05 52.5 10.0 53 28-80 92-156 (386)
431 TIGR03878 thermo_KaiC_2 KaiC d 93.3 0.12 2.5E-06 56.8 5.4 38 49-86 34-71 (259)
432 COG1224 TIP49 DNA helicase TIP 93.3 0.23 5.1E-06 54.4 7.4 58 23-80 34-94 (450)
433 PRK13833 conjugal transfer pro 93.3 0.46 9.9E-06 53.4 10.0 89 52-154 145-235 (323)
434 PF12775 AAA_7: P-loop contain 93.2 0.1 2.2E-06 57.5 4.8 25 52-76 34-58 (272)
435 cd02028 UMPK_like Uridine mono 93.2 0.088 1.9E-06 54.1 4.1 26 53-78 1-26 (179)
436 KOG0735 AAA+-type ATPase [Post 93.2 1.7 3.6E-05 52.3 14.5 150 28-204 667-848 (952)
437 PLN03186 DNA repair protein RA 93.1 0.56 1.2E-05 53.2 10.7 42 33-74 105-146 (342)
438 COG0488 Uup ATPase components 93.1 0.21 4.5E-06 60.0 7.5 128 53-190 350-511 (530)
439 KOG0927 Predicted transporter 93.1 0.12 2.5E-06 59.9 4.9 24 51-74 101-124 (614)
440 PRK08506 replicative DNA helic 93.0 0.69 1.5E-05 55.4 11.8 72 30-109 172-243 (472)
441 COG3854 SpoIIIAA ncharacterize 93.0 0.41 8.8E-06 49.4 8.2 112 52-173 138-254 (308)
442 PRK03846 adenylylsulfate kinas 93.0 0.12 2.7E-06 54.1 4.9 37 49-85 22-58 (198)
443 PRK13543 cytochrome c biogenes 93.0 0.41 8.8E-06 50.9 8.9 24 51-74 37-60 (214)
444 PLN03187 meiotic recombination 93.0 0.17 3.8E-06 57.2 6.3 37 37-73 112-148 (344)
445 PRK09165 replicative DNA helic 93.0 0.54 1.2E-05 56.6 10.8 46 31-77 198-243 (497)
446 PLN02674 adenylate kinase 92.9 0.48 1E-05 50.9 9.2 25 51-75 31-55 (244)
447 TIGR00455 apsK adenylylsulfate 92.9 0.42 9E-06 49.5 8.7 27 50-76 17-43 (184)
448 COG1136 SalX ABC-type antimicr 92.9 0.18 3.9E-06 53.0 5.8 56 121-177 147-208 (226)
449 cd03281 ABC_MSH5_euk MutS5 hom 92.9 0.092 2E-06 55.7 3.8 23 51-73 29-51 (213)
450 COG0396 sufC Cysteine desulfur 92.9 0.5 1.1E-05 49.1 8.7 59 124-182 152-214 (251)
451 PRK10463 hydrogenase nickel in 92.9 0.18 3.9E-06 55.3 5.9 35 49-83 102-136 (290)
452 PRK05439 pantothenate kinase; 92.9 0.14 3E-06 57.0 5.2 29 49-77 84-112 (311)
453 cd03213 ABCG_EPDR ABCG transpo 92.8 0.63 1.4E-05 48.6 9.9 25 51-75 35-59 (194)
454 cd00267 ABC_ATPase ABC (ATP-bi 92.8 0.19 4.1E-06 50.5 5.8 114 52-177 26-145 (157)
455 KOG0736 Peroxisome assembly fa 92.8 2.3 5.1E-05 51.6 15.2 48 31-78 404-458 (953)
456 PRK05917 DNA polymerase III su 92.8 2.8 6E-05 46.3 15.0 39 36-75 5-43 (290)
457 COG1936 Predicted nucleotide k 92.8 0.078 1.7E-06 52.4 2.7 20 53-72 2-21 (180)
458 cd02024 NRK1 Nicotinamide ribo 92.8 0.076 1.6E-06 54.7 2.7 23 53-75 1-23 (187)
459 PF00006 ATP-synt_ab: ATP synt 92.7 0.2 4.3E-06 52.8 5.9 26 52-77 16-41 (215)
460 COG0529 CysC Adenylylsulfate k 92.7 0.15 3.3E-06 50.4 4.6 31 49-79 21-51 (197)
461 PRK08006 replicative DNA helic 92.7 0.82 1.8E-05 54.5 11.8 46 30-76 204-249 (471)
462 KOG2123 Uncharacterized conser 92.7 0.0072 1.6E-07 63.4 -4.7 96 402-498 18-123 (388)
463 cd03283 ABC_MutS-like MutS-lik 92.7 0.57 1.2E-05 49.0 9.4 23 52-74 26-48 (199)
464 PRK13948 shikimate kinase; Pro 92.7 0.097 2.1E-06 53.7 3.4 27 50-76 9-35 (182)
465 PF00560 LRR_1: Leucine Rich R 92.7 0.043 9.3E-07 34.5 0.5 20 801-820 1-20 (22)
466 cd00071 GMPK Guanosine monopho 92.7 0.081 1.8E-06 51.7 2.7 26 53-78 1-26 (137)
467 PRK09280 F0F1 ATP synthase sub 92.7 0.22 4.8E-06 58.1 6.7 93 51-146 144-250 (463)
468 TIGR02524 dot_icm_DotB Dot/Icm 92.7 0.21 4.6E-06 57.2 6.5 94 51-152 134-230 (358)
469 COG1102 Cmk Cytidylate kinase 92.7 0.092 2E-06 51.1 2.9 26 53-78 2-27 (179)
470 PRK13949 shikimate kinase; Pro 92.6 0.092 2E-06 53.4 3.2 24 53-76 3-26 (169)
471 COG0703 AroK Shikimate kinase 92.6 0.096 2.1E-06 52.3 3.2 28 52-79 3-30 (172)
472 cd02021 GntK Gluconate kinase 92.6 0.082 1.8E-06 52.7 2.7 23 53-75 1-23 (150)
473 PRK06217 hypothetical protein; 92.6 0.088 1.9E-06 54.4 3.1 24 53-76 3-26 (183)
474 COG0467 RAD55 RecA-superfamily 92.6 0.18 3.9E-06 55.4 5.7 47 40-86 12-58 (260)
475 COG1120 FepC ABC-type cobalami 92.6 0.27 5.9E-06 52.8 6.7 23 51-73 28-50 (258)
476 PRK13765 ATP-dependent proteas 92.5 0.2 4.4E-06 61.4 6.5 62 22-87 25-87 (637)
477 KOG0740 AAA+-type ATPase [Post 92.5 1.6 3.4E-05 50.4 13.1 29 49-77 184-212 (428)
478 cd03237 ABC_RNaseL_inhibitor_d 92.5 0.28 6E-06 53.4 6.9 25 51-75 25-49 (246)
479 TIGR02322 phosphon_PhnN phosph 92.5 0.099 2.1E-06 53.9 3.3 25 52-76 2-26 (179)
480 COG4240 Predicted kinase [Gene 92.5 0.44 9.6E-06 49.0 7.6 82 49-135 48-134 (300)
481 COG3640 CooC CO dehydrogenase 92.5 0.17 3.6E-06 52.6 4.7 35 53-87 2-36 (255)
482 COG4133 CcmA ABC-type transpor 92.5 0.11 2.4E-06 52.0 3.2 45 127-173 141-191 (209)
483 PHA02244 ATPase-like protein 92.5 0.15 3.3E-06 57.4 4.9 45 28-76 96-144 (383)
484 PRK02496 adk adenylate kinase; 92.4 0.34 7.5E-06 50.1 7.3 23 53-75 3-25 (184)
485 PLN02459 probable adenylate ki 92.4 0.43 9.4E-06 51.5 8.0 94 53-154 31-129 (261)
486 PF03205 MobB: Molybdopterin g 92.4 0.18 3.9E-06 49.4 4.7 35 52-86 1-36 (140)
487 PRK10436 hypothetical protein; 92.4 0.49 1.1E-05 56.0 9.2 100 36-152 206-305 (462)
488 TIGR01650 PD_CobS cobaltochela 92.4 0.2 4.3E-06 55.9 5.6 52 24-79 41-92 (327)
489 PRK13946 shikimate kinase; Pro 92.4 0.1 2.2E-06 54.1 3.2 25 52-76 11-35 (184)
490 cd00464 SK Shikimate kinase (S 92.4 0.1 2.2E-06 52.1 3.2 22 54-75 2-23 (154)
491 cd02020 CMPK Cytidine monophos 92.4 0.096 2.1E-06 51.8 2.9 23 53-75 1-23 (147)
492 PF00625 Guanylate_kin: Guanyl 92.3 0.13 2.8E-06 53.2 4.0 35 51-85 2-36 (183)
493 COG3910 Predicted ATPase [Gene 92.3 0.67 1.4E-05 46.5 8.4 63 124-190 137-203 (233)
494 PRK05201 hslU ATP-dependent pr 92.3 0.16 3.5E-06 58.1 4.9 50 28-77 15-76 (443)
495 cd03243 ABC_MutS_homologs The 92.3 0.09 2E-06 55.4 2.8 22 52-73 30-51 (202)
496 PRK13975 thymidylate kinase; P 92.3 0.11 2.5E-06 54.3 3.5 26 52-77 3-28 (196)
497 TIGR02236 recomb_radA DNA repa 92.3 0.38 8.2E-06 54.5 8.0 39 38-76 82-120 (310)
498 cd03240 ABC_Rad50 The catalyti 92.3 0.49 1.1E-05 49.8 8.3 21 52-72 23-43 (204)
499 PRK00409 recombination and DNA 92.3 0.41 9E-06 60.7 9.0 113 133-255 406-526 (782)
500 cd02023 UMPK Uridine monophosp 92.3 0.09 2E-06 55.2 2.7 23 53-75 1-23 (198)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.7e-101 Score=1002.98 Aligned_cols=821 Identities=35% Similarity=0.597 Sum_probs=641.3
Q ss_pred CchHHHHHHHHHHHHHhhcc-cCCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccC
Q 045458 2 CRNESEFIEEIVNVISSKIH-TEPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFD 80 (1170)
Q Consensus 2 ~~~e~~~i~~i~~~i~~~l~-~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~ 80 (1170)
+++|+++|++||++|++++. +++.+.+++|||+++++++.+++..+.+++++|+||||||+||||||+++|+++..+|+
T Consensus 157 ~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~ 236 (1153)
T PLN03210 157 WPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQ 236 (1153)
T ss_pred CCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCC
Confidence 57899999999999999998 77778899999999999999999887788999999999999999999999999999999
Q ss_pred ceeEEEecc--hhh---c-----cCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHHHHH
Q 045458 81 GSSFLADVR--EKS---E-----KEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVEQLQ 150 (1170)
Q Consensus 81 ~~~~~~~~~--~~~---~-----~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~~l~ 150 (1170)
+.+|+.... ... . .......++++++.++....+.... ....++++++++|+||||||||+.++|+
T Consensus 237 g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~----~~~~~~~~L~~krvLLVLDdv~~~~~l~ 312 (1153)
T PLN03210 237 SSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIY----HLGAMEERLKHRKVLIFIDDLDDQDVLD 312 (1153)
T ss_pred eEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccC----CHHHHHHHHhCCeEEEEEeCCCCHHHHH
Confidence 999986421 111 0 1112245677777777644333221 1256788999999999999999999999
Q ss_pred HhhcCcCCCCCCcEEEEEeCCchhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCch
Q 045458 151 SLAGKRDWFGPGSRILITTRDKQLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPL 230 (1170)
Q Consensus 151 ~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 230 (1170)
.+.+...|+++||+||||||+++++..++++. +|+|+.++.+||++||+++||+...+.+++.+++.+|+++|+|+||
T Consensus 313 ~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~--~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPL 390 (1153)
T PLN03210 313 ALAGQTQWFGSGSRIIVITKDKHFLRAHGIDH--IYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPL 390 (1153)
T ss_pred HHHhhCccCCCCcEEEEEeCcHHHHHhcCCCe--EEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcH
Confidence 99998889999999999999999987766665 9999999999999999999999887888899999999999999999
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHhhcCCCchHHHHHHhhccCCCh-hhhhHhhhhcccccccCHHHHHHHHhhCCCCccc
Q 045458 231 ALKVLGSFLIGRTADLWRSALERLKRDPSYKIMSILQISFDGLQG-SEKKIFLDVACFFKRWDRDYVAEILEGCGFSPVI 309 (1170)
Q Consensus 231 al~~l~~~L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~-~~k~~fl~~a~f~~~~~~~~l~~~~~~~g~~~~~ 309 (1170)
|++++|++|++++..+|+.+++++++.++..|..+|++||++|++ .+|.||+++||||++.+.+.+..++..+++.+..
T Consensus 391 Al~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~ 470 (1153)
T PLN03210 391 GLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNI 470 (1153)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchh
Confidence 999999999999999999999999998888999999999999987 5899999999999999999999999999998899
Q ss_pred hhhhhhcccceeeeCCCceechHHHHHHHHHHHhccCCCCCCCccccccchhhhHHhcccCCceeEEEEEecCCCCCccc
Q 045458 310 GLEVLIERSLLTVDEDNTLGMHDLLQELGQLIVARQSPEEPGKRSRIWRGEEVRHVLTKNTGSEVVEGIIIDQRYFPEND 389 (1170)
Q Consensus 310 ~l~~L~~~sLi~~~~~~~~~mH~li~~~~~~i~~~~~~~~~~~~~~l~~~~~i~~~l~~~~~~~~~~~i~l~~~~~~~~~ 389 (1170)
+++.|+++|||++. .+++.|||++|+||++++++++ .+|++++++|.++++.+++..++|++.+++|.++..... +
T Consensus 471 ~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~--~ 546 (1153)
T PLN03210 471 GLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEID--E 546 (1153)
T ss_pred ChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccc--e
Confidence 99999999999987 6789999999999999999987 789999999999999999999999999999999987332 2
Q ss_pred chhhcchhhhccCCCccEEeecCc----------ccCCchhcccCCceEEEcCCCCCCCCCCCCCCCceeEEEccCCChH
Q 045458 390 VYLWASAKAFSKMTNLRLLGICNL----------KLPEGLECLSNKLRLLDWPGYPLKSLPPNLQLDKTIEFKMLCSRIE 459 (1170)
Q Consensus 390 ~~~~~~~~~f~~~~~Lr~L~l~~~----------~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~s~i~ 459 (1170)
..+...+|.+|++|++|.+.+. ++|+++..+|.+||+|+|.+|+++++|..|.+.+|++|++++++++
T Consensus 547 --~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~ 624 (1153)
T PLN03210 547 --LHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE 624 (1153)
T ss_pred --eeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc
Confidence 6678899999999999999643 3788899999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCCcEEEcCCCCCCCcCCCCCCCCCccEEEeeccCCcccccccccCCCCccEEEeeCCCCCCccCccccCC
Q 045458 460 ELWKGIKSLNMLKVMKVSYSQSLIKIPDFTGVPNLEKLYLEGCTRLREIHPSLLLHSKLVILNLTGCTSLATLPGKIFMK 539 (1170)
Q Consensus 460 ~L~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~ 539 (1170)
.+|.++..+++|+.|+|+++..+..+|+++.+++|++|+|++|..+..+|.++..+++|+.|++++|..+..+|..+.++
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~ 704 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLK 704 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred cccEEEecCCCCCCccccccCCCCCCcEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeC
Q 045458 540 SVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSG 619 (1170)
Q Consensus 540 ~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~ 619 (1170)
+|+.|++++|..+..+|.. ..+|++|+++++.+..+|..+ .+++|+.|.+.++.... ++..+..+
T Consensus 705 sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~-l~~~~~~l---------- 769 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEK-LWERVQPL---------- 769 (1153)
T ss_pred CCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhh-cccccccc----------
Confidence 9999999999988888764 357888999999988888655 46667766666543211 10000000
Q ss_pred CCCCCCcchhhcCCcccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCcc
Q 045458 620 CSKLKKFPEIVESMEDLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPE 699 (1170)
Q Consensus 620 ~~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~ 699 (1170)
.+.....+++|+.|++++|..+..+|.+++++++|+.|++++|..++.+|.
T Consensus 770 -----------------------------~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~ 820 (1153)
T PLN03210 770 -----------------------------TPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT 820 (1153)
T ss_pred -----------------------------chhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC
Confidence 000111234556666666666666666666666666666666655444443
Q ss_pred ccCCCCCCcEEEccCccCCCCCccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCE
Q 045458 700 TLGQVESLEELHISGTAIRQPPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTK 779 (1170)
Q Consensus 700 ~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~ 779 (1170)
.. .+ ++|+.|++++|.... .+|. ..++|+.
T Consensus 821 ~~-~L-----------------------~sL~~L~Ls~c~~L~-----------------------~~p~---~~~nL~~ 850 (1153)
T PLN03210 821 GI-NL-----------------------ESLESLDLSGCSRLR-----------------------TFPD---ISTNISD 850 (1153)
T ss_pred CC-Cc-----------------------cccCEEECCCCCccc-----------------------cccc---cccccCE
Confidence 22 12 223333333332111 0000 0123444
Q ss_pred EeccCCCCCCCCCcCccCCCCCCCEEECcCC-CCcccchhhhcCCCCCEeeccCccCCCcCCC--CCcccceeeccCCcC
Q 045458 780 LDLSDCDLGEGFIPNDIGNLRSLKVLCLSNN-SFVSLPASISRLSKLECLNLNGCKKLQSLPP--LPARMRIASVNGCAS 856 (1170)
Q Consensus 780 L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n-~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~--lp~sL~~L~i~~C~~ 856 (1170)
|+|++|.+.+ +|..+..+++|+.|+|++| ++..+|..+..+++|+.|++++|+.|+.++- .|.++ ..+.++.
T Consensus 851 L~Ls~n~i~~--iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~--~~~~~n~- 925 (1153)
T PLN03210 851 LNLSRTGIEE--VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEV--AMATDNI- 925 (1153)
T ss_pred eECCCCCCcc--ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhh--hhhcccc-
Confidence 4555544432 4444555555555555553 4455555555666666666666666654432 22111 1111110
Q ss_pred CcccCCcccccccccceeeccCcccccCChhhHHHHHHHHhhhhHhhhhhhcccccchhhhHHhhhhccchhhhhhcccC
Q 045458 857 LETLSDPLELNKLKDFEIQCMDCVKLQGNNDLALSLLKEHMEQYEVSLSLSLTCANIMPKLKIMQWYGFLYYLFIFSGLQ 936 (1170)
Q Consensus 857 L~~l~~~~~~~~L~~l~i~~~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 936 (1170)
...+ + ....+.+.||.+|.....+ + +
T Consensus 926 ~~~~------p--~~~~l~f~nC~~L~~~a~l--------------------------------~--------------~ 951 (1153)
T PLN03210 926 HSKL------P--STVCINFINCFNLDQEALL--------------------------------Q--------------Q 951 (1153)
T ss_pred cccC------C--chhccccccccCCCchhhh--------------------------------c--------------c
Confidence 0011 1 1123456788887332210 0 0
Q ss_pred CCCCccceeEEEecCCCCCCCccCCCCCCceEE-EEeCCCCCCCCceeEEEEEEEEee
Q 045458 937 DMSDYHKYCSIVVPGSKIPEWFEHRNNEGSSIR-ISRSSKTYKNSKLVGYAMCCVFQV 993 (1170)
Q Consensus 937 ~~~~~~~~~~~~~pg~~iP~wf~~~~~~g~~i~-~~lp~~~~~~~~~~g~~~c~v~~~ 993 (1170)
. .....+++||.+||+||.||+ .|++++ |.+|+.|+ ...|.||++|+|+.+
T Consensus 952 ~----~~~~~~~l~g~evp~~f~hr~-~g~sl~~i~l~~~~~-~~~~~~f~~c~v~~~ 1003 (1153)
T PLN03210 952 Q----SIFKQLILSGEEVPSYFTHRT-TGASLTNIPLLHISP-CQPFFRFRACAVVDS 1003 (1153)
T ss_pred c----ccceEEECCCccCchhccCCc-ccceeeeeccCCccc-CCCccceEEEEEEec
Confidence 0 011247889999999999999 899998 99999998 778999999999974
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-57 Score=558.94 Aligned_cols=452 Identities=29% Similarity=0.403 Sum_probs=336.1
Q ss_pred ccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhh---hccccCceeEEEecchhhccCCcHHHHHHHHHH
Q 045458 31 VGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDS---MSYEFDGSSFLADVREKSEKEGSVISLQKQLLS 107 (1170)
Q Consensus 31 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 107 (1170)
||.+..++++...|..+. .++|+|+||||+||||||++++++ +..+|+..+|+.. +. ......+|++++.
T Consensus 161 VG~e~~~~kl~~~L~~d~--~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~V----Sk-~f~~~~iq~~Il~ 233 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDD--VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVV----SK-EFTTRKIQQTILE 233 (889)
T ss_pred ccHHHHHHHHHHHhccCC--CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEE----cc-cccHHhHHHHHHH
Confidence 999999999999987643 399999999999999999999984 6789999999983 33 3334899999999
Q ss_pred HHhhcCC-CccccchhhHHHHHHhhCCCeEEEEEeCCCCHHHHHHhhcCcCCCCCCcEEEEEeCCchhhhh-hCCCCccE
Q 045458 108 NLLKLGD-ISIWHVEDGINIIGSRLRQKKVLLIIDDVADVEQLQSLAGKRDWFGPGSRILITTRDKQLLVA-HEVDEEHI 185 (1170)
Q Consensus 108 ~l~~~~~-~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~-~~~~~~~~ 185 (1170)
.+..... ......++....|.+.|+.||+||||||||+..+|+.+..+++....||+|++|||++.|+.. ++++. .
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~--~ 311 (889)
T KOG4658|consen 234 RLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDY--P 311 (889)
T ss_pred HhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCc--c
Confidence 8864222 122223677888999999999999999999999999999999888889999999999999877 55544 8
Q ss_pred EECCCCChHHHHHHHHHhhcCCC-CCChhhHHHHHHHHHHhCCCchHHHHHHHhhcCC-CHHHHHHHHHHhhcC-----C
Q 045458 186 LNLDVLNNDEALQLFSMKAFKTH-QPVGEYVELSERVLEYAGGLPLALKVLGSFLIGR-TADLWRSALERLKRD-----P 258 (1170)
Q Consensus 186 ~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L~~~-~~~~w~~~l~~l~~~-----~ 258 (1170)
++++.|+.+|||+||++.||... ...+..+++|++++++|+|+|||+.++|+.|+.+ +..+|+.+.+.+... +
T Consensus 312 ~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~ 391 (889)
T KOG4658|consen 312 IEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFS 391 (889)
T ss_pred ccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCC
Confidence 99999999999999999998764 3335589999999999999999999999999986 778999999988654 1
Q ss_pred --CchHHHHHHhhccCCChhhhhHhhhhccccccc--CHHHHHHHHhhCCCCcc------------chhhhhhcccceee
Q 045458 259 --SYKIMSILQISFDGLQGSEKKIFLDVACFFKRW--DRDYVAEILEGCGFSPV------------IGLEVLIERSLLTV 322 (1170)
Q Consensus 259 --~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~l~~~~~~~g~~~~------------~~l~~L~~~sLi~~ 322 (1170)
...+..+++.|||.|+++.|.||+|||.||+++ +.+.++..|+++||+.. ..+++|++++|+..
T Consensus 392 ~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~ 471 (889)
T KOG4658|consen 392 GMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIE 471 (889)
T ss_pred chhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhh
Confidence 356889999999999988999999999999996 78999999999997643 22899999999998
Q ss_pred eCC----CceechHHHHHHHHHHHhccCCCCCCCccccccchhhhHHhcccCCceeEEEEEecCCCCCcccchhhcchhh
Q 045458 323 DED----NTLGMHDLLQELGQLIVARQSPEEPGKRSRIWRGEEVRHVLTKNTGSEVVEGIIIDQRYFPENDVYLWASAKA 398 (1170)
Q Consensus 323 ~~~----~~~~mH~li~~~~~~i~~~~~~~~~~~~~~l~~~~~i~~~l~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~ 398 (1170)
... ..+.|||++|+||.+++.+.+..... .++-+.. ... +
T Consensus 472 ~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~-------------------------~iv~~~~-~~~-~--------- 515 (889)
T KOG4658|consen 472 ERDEGRKETVKMHDVVREMALWIASDFGKQEEN-------------------------QIVSDGV-GLS-E--------- 515 (889)
T ss_pred cccccceeEEEeeHHHHHHHHHHhccccccccc-------------------------eEEECCc-Ccc-c---------
Confidence 742 57999999999999999865422111 0000000 000 0
Q ss_pred hccCCCccEEeecCcccCCchhcccCCceEEEcCCCCCCCCCCCCCCCceeEEEccCCC--hHHHhh-cCCCCCCCcEEE
Q 045458 399 FSKMTNLRLLGICNLKLPEGLECLSNKLRLLDWPGYPLKSLPPNLQLDKTIEFKMLCSR--IEELWK-GIKSLNMLKVMK 475 (1170)
Q Consensus 399 f~~~~~Lr~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~s~--i~~L~~-~l~~l~~L~~L~ 475 (1170)
.|.. . -+...|.+.+.++.+..++......+|.+|-+..+. +..++. .+..++.|++||
T Consensus 516 ----------------~~~~-~-~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLD 577 (889)
T KOG4658|consen 516 ----------------IPQV-K-SWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLD 577 (889)
T ss_pred ----------------cccc-c-chhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEE
Confidence 0000 0 012466677777777777777655567777766664 444432 255566666666
Q ss_pred cCCCCCCCcCCC-CCCCCCccEEEeeccCCcccccccccCCCCccEEEeeCCCCCCccCcccc-CCcccEEEe
Q 045458 476 VSYSQSLIKIPD-FTGVPNLEKLYLEGCTRLREIHPSLLLHSKLVILNLTGCTSLATLPGKIF-MKSVKKLVL 546 (1170)
Q Consensus 476 Ls~~~~l~~~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L 546 (1170)
|++|..+..+|. ++.+-+||+|++++ +.+..+|.++.++.+|.+|++..+..+...|.... +.+|++|.+
T Consensus 578 Ls~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l 649 (889)
T KOG4658|consen 578 LSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRL 649 (889)
T ss_pred CCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEe
Confidence 666666666664 55566666666665 34555666666666666666655444444433333 444444443
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9.4e-38 Score=409.88 Aligned_cols=510 Identities=22% Similarity=0.249 Sum_probs=378.5
Q ss_pred CCCCccccccchhhhHHhcccC--CceeEEEEEecCCCCCcccchhhcchhhhccCCCccEEeecCcccC----Cchhcc
Q 045458 349 EPGKRSRIWRGEEVRHVLTKNT--GSEVVEGIIIDQRYFPENDVYLWASAKAFSKMTNLRLLGICNLKLP----EGLECL 422 (1170)
Q Consensus 349 ~~~~~~~l~~~~~i~~~l~~~~--~~~~~~~i~l~~~~~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~l~----~~~~~l 422 (1170)
+++++.+.|...+......... ....+..+.+... .. ......+|..+++|++|+++++++. ..+...
T Consensus 43 ~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~-~i-----~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~ 116 (968)
T PLN00113 43 DPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGK-NI-----SGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTT 116 (968)
T ss_pred CCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCC-Cc-----cccCChHHhCCCCCCEEECCCCccCCcCChHHhcc
Confidence 3445556675433221111111 1235666666543 11 1123567899999999999998754 344434
Q ss_pred cCCceEEEcCCCCCCCCCCCCCCCceeEEEccCCChH-HHhhcCCCCCCCcEEEcCCCCCCCcCCC-CCCCCCccEEEee
Q 045458 423 SNKLRLLDWPGYPLKSLPPNLQLDKTIEFKMLCSRIE-ELWKGIKSLNMLKVMKVSYSQSLIKIPD-FTGVPNLEKLYLE 500 (1170)
Q Consensus 423 ~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~s~i~-~L~~~l~~l~~L~~L~Ls~~~~l~~~~~-~~~l~~L~~L~L~ 500 (1170)
..+||+|++++|.+....+...+.+|++|++++|.+. .+|..+..+++|++|++++|.....+|. ++++++|++|+++
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 196 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA 196 (968)
T ss_pred CCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeecc
Confidence 4689999999998875444456889999999999987 6788899999999999999987666665 8899999999999
Q ss_pred ccCCcccccccccCCCCccEEEeeCCCCCCccCcccc-CCcccEEEecCCCCCCccccccCCCCCCcEEEecCccC-Ccc
Q 045458 501 GCTRLREIHPSLLLHSKLVILNLTGCTSLATLPGKIF-MKSVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTAI-GEL 578 (1170)
Q Consensus 501 ~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~i-~~l 578 (1170)
+|.....+|..+..+++|+.|++++|.....+|..+. +++|++|++++|.....+|..++++++|++|++++|.+ ..+
T Consensus 197 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 276 (968)
T PLN00113 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI 276 (968)
T ss_pred CCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccC
Confidence 9887778888999999999999999887777887776 89999999999988888888899999999999998887 467
Q ss_pred CcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCC-ccCccccCCC
Q 045458 579 PLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSIT-EVPSSIELLT 657 (1170)
Q Consensus 579 ~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~ 657 (1170)
|.++..+++|+.|++++|.....+|..+.++++|+.|++++|......|..+..+++|+.|++++|.+. .+|..++.++
T Consensus 277 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~ 356 (968)
T PLN00113 277 PPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN 356 (968)
T ss_pred chhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCC
Confidence 888888999999999988877788888888888888888888888888888888888888888888877 6777788888
Q ss_pred CCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCC-CCCccccCC---------
Q 045458 658 GLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIR-QPPSGIFHM--------- 727 (1170)
Q Consensus 658 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~-~lp~~l~~l--------- 727 (1170)
+|+.|++++|.....+|..++.+++|+.|++++|.....+|..++.+++|+.|++++|.++ .+|..+..+
T Consensus 357 ~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 436 (968)
T PLN00113 357 NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDIS 436 (968)
T ss_pred CCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECc
Confidence 8888888887776666666666666666666666555555555555566666666555554 334444444
Q ss_pred ---------------CCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCC
Q 045458 728 ---------------KNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFI 792 (1170)
Q Consensus 728 ---------------~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~ 792 (1170)
++|+.|++++|..............+..++++.|.+....|..+..+++|+.|+|++|.+. +.+
T Consensus 437 ~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~ 515 (968)
T PLN00113 437 NNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS-GEI 515 (968)
T ss_pred CCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcce-eeC
Confidence 4455555555443322222222234555667777777777888888888888888888874 567
Q ss_pred cCccCCCCCCCEEECcCCCCc-ccchhhhcCCCCCEeeccCccCCCcCCCC---CcccceeeccCCcCCcccCCccc
Q 045458 793 PNDIGNLRSLKVLCLSNNSFV-SLPASISRLSKLECLNLNGCKKLQSLPPL---PARMRIASVNGCASLETLSDPLE 865 (1170)
Q Consensus 793 ~~~l~~l~sL~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l---p~sL~~L~i~~C~~L~~l~~~~~ 865 (1170)
|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|+....+|.. .++|+.|++++|+-...+|....
T Consensus 516 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~ 592 (968)
T PLN00113 516 PDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGA 592 (968)
T ss_pred ChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcch
Confidence 888888888999999998887 57778888889999999988887777752 35688888888887766765433
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.7e-35 Score=388.53 Aligned_cols=447 Identities=21% Similarity=0.236 Sum_probs=294.4
Q ss_pred cchhhhccCCCccEEeecCcccCCchh-cccCCceEEEcCCCCCC-CCCCCC-CCCceeEEEccCCChH-HHhhcCCCCC
Q 045458 394 ASAKAFSKMTNLRLLGICNLKLPEGLE-CLSNKLRLLDWPGYPLK-SLPPNL-QLDKTIEFKMLCSRIE-ELWKGIKSLN 469 (1170)
Q Consensus 394 ~~~~~f~~~~~Lr~L~l~~~~l~~~~~-~l~~~Lr~L~l~~~~l~-~lp~~~-~l~~L~~L~L~~s~i~-~L~~~l~~l~ 469 (1170)
++...|..+++||+|+++++.+.+.+. ....+|++|++++|.+. .+|..+ .+.+|++|++++|.+. .+|..+.+++
T Consensus 109 ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 188 (968)
T PLN00113 109 IPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT 188 (968)
T ss_pred CChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCc
Confidence 444556677777777777666543221 11235666666666654 455555 5666666666666654 4555566666
Q ss_pred CCcEEEcCCCCCCCcCCC-CCCCCCccEEEeeccCCcccccccccCCCCccEEEeeCCCCCCccCcccc-CCcccEEEec
Q 045458 470 MLKVMKVSYSQSLIKIPD-FTGVPNLEKLYLEGCTRLREIHPSLLLHSKLVILNLTGCTSLATLPGKIF-MKSVKKLVLS 547 (1170)
Q Consensus 470 ~L~~L~Ls~~~~l~~~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~ 547 (1170)
+|++|++++|.....+|. +.++++|++|++++|.....+|..+..+++|++|++++|.....+|..+. +++|++|+++
T Consensus 189 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 268 (968)
T PLN00113 189 SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY 268 (968)
T ss_pred CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECc
Confidence 666666666655444443 55566666666666555445555566666666666665554444554444 5555555555
Q ss_pred CCCCCCccccccCCCCCCcEEEecCccCC-ccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCc
Q 045458 548 GCSKLKKFPKIVGNMECLSKLLLDGTAIG-ELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKF 626 (1170)
Q Consensus 548 ~~~~~~~l~~~l~~l~~L~~L~L~~~~i~-~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~ 626 (1170)
+|.....+|..+.++++|++|++++|.+. .+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|.....+
T Consensus 269 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 348 (968)
T PLN00113 269 QNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348 (968)
T ss_pred CCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcC
Confidence 55554455555555555555555555542 34444555555555555555544444444555555555555555444444
Q ss_pred chhhcCCcc------------------------cCeEeccCcCCC-ccCccccCCCCCCEEeccCCcCCccccccCCCCC
Q 045458 627 PEIVESMED------------------------LSELFLDGTSIT-EVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLK 681 (1170)
Q Consensus 627 p~~~~~l~~------------------------L~~L~l~~~~l~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~ 681 (1170)
|..+..+++ |+.|++.+|.+. .+|..+..+++|+.|++++|.....+|..+..++
T Consensus 349 p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~ 428 (968)
T PLN00113 349 PKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLP 428 (968)
T ss_pred ChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCC
Confidence 444444444 445555444444 4455566667777777777776666777777777
Q ss_pred CCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCCCccccCCCCCcEEEecCCCCCCC-CCCcccCcccccccccC
Q 045458 682 SLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQPPSGIFHMKNLKALYFRGCKGSPS-STSWSRHFPFNLIKRSL 760 (1170)
Q Consensus 682 ~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~~~~-~~~~~~~~~l~~~~~~~ 760 (1170)
+|+.|++++|.....++..+..+++|+.|++++|.+..........++|+.|++++|..... +..+.....+..+.++.
T Consensus 429 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 508 (968)
T PLN00113 429 LVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE 508 (968)
T ss_pred CCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcC
Confidence 77777777777666677666777888888888887764433344568999999999986543 23344555677788888
Q ss_pred CCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCc-ccchhhhcCCCCCEeeccCccCCCcC
Q 045458 761 DPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFV-SLPASISRLSKLECLNLNGCKKLQSL 839 (1170)
Q Consensus 761 ~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~l 839 (1170)
|.+...+|..+..+++|+.|+|++|.+. +.+|..+..+++|+.|+|++|++. .+|..+..+++|+.|++++|+....+
T Consensus 509 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~ 587 (968)
T PLN00113 509 NKLSGEIPDELSSCKKLVSLDLSHNQLS-GQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSL 587 (968)
T ss_pred CcceeeCChHHcCccCCCEEECCCCccc-ccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeC
Confidence 9998899999999999999999999984 678999999999999999999998 78999999999999999999998888
Q ss_pred CC
Q 045458 840 PP 841 (1170)
Q Consensus 840 p~ 841 (1170)
|.
T Consensus 588 p~ 589 (968)
T PLN00113 588 PS 589 (968)
T ss_pred CC
Confidence 86
No 5
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=7.5e-36 Score=335.48 Aligned_cols=270 Identities=32% Similarity=0.510 Sum_probs=213.5
Q ss_pred chhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhh--hccccCceeEEEecchhhccCCcHHHHHHHHHHHHh
Q 045458 33 IESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDS--MSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLL 110 (1170)
Q Consensus 33 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 110 (1170)
||+++++|.+.|....++.++|+|+||||+||||||++++++ ++..|+.++|+.... .... ..++++++.++.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~----~~~~-~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSK----NPSL-EQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-----SCC-HHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccc----cccc-cccccccccccc
Confidence 789999999999886678999999999999999999999998 889999888887322 2222 778888888886
Q ss_pred hcCC-C-ccccchhhHHHHHHhhCCCeEEEEEeCCCCHHHHHHhhcCcCCCCCCcEEEEEeCCchhhhhhCCCCccEEEC
Q 045458 111 KLGD-I-SIWHVEDGINIIGSRLRQKKVLLIIDDVADVEQLQSLAGKRDWFGPGSRILITTRDKQLLVAHEVDEEHILNL 188 (1170)
Q Consensus 111 ~~~~-~-~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~~~l 188 (1170)
.... . ...+..+....+++.|+++++||||||||+..+|+.+...++.+..|++||||||+..++...... ...|++
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~-~~~~~l 154 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGT-DKVIEL 154 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSC-EEEEEC
T ss_pred ccccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 4322 1 345667788999999999999999999999999999887777777899999999999877655432 348999
Q ss_pred CCCChHHHHHHHHHhhcCCC-CCChhhHHHHHHHHHHhCCCchHHHHHHHhhcCC-CHHHHHHHHHHhhcCC------Cc
Q 045458 189 DVLNNDEALQLFSMKAFKTH-QPVGEYVELSERVLEYAGGLPLALKVLGSFLIGR-TADLWRSALERLKRDP------SY 260 (1170)
Q Consensus 189 ~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L~~~-~~~~w~~~l~~l~~~~------~~ 260 (1170)
++|+.+||++||...++... ...+...+.+++|+++|+|+||||+++|++|+.+ +..+|+.+++++.... ..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~ 234 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDR 234 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999998655 3344556789999999999999999999999543 6788999998776432 46
Q ss_pred hHHHHHHhhccCCChhhhhHhhhhccccccc--CHHHHHHHHhhCCCCcc
Q 045458 261 KIMSILQISFDGLQGSEKKIFLDVACFFKRW--DRDYVAEILEGCGFSPV 308 (1170)
Q Consensus 261 ~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~l~~~~~~~g~~~~ 308 (1170)
.+..++..||+.|+++.|+||++||+||.++ +.+.++.+|.++|++..
T Consensus 235 ~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 235 SVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 7999999999999999999999999999985 69999999999988754
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=1.5e-29 Score=279.22 Aligned_cols=366 Identities=23% Similarity=0.322 Sum_probs=254.0
Q ss_pred eEEEcCCCCCC--CCCCCC-CCCceeEEEccCCChHHHhhcCCCCCCCcEEEcCCCCCCCcCCCCCCCCCccEEEeeccC
Q 045458 427 RLLDWPGYPLK--SLPPNL-QLDKTIEFKMLCSRIEELWKGIKSLNMLKVMKVSYSQSLIKIPDFTGVPNLEKLYLEGCT 503 (1170)
Q Consensus 427 r~L~l~~~~l~--~lp~~~-~l~~L~~L~L~~s~i~~L~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~ 503 (1170)
|-.++++|.++ .+|.+. .+..++.|.|..+.+.++|+.+..|.+|++|.+++|+.......++.+|.|+.+++..|.
T Consensus 10 rGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~ 89 (1255)
T KOG0444|consen 10 RGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNN 89 (1255)
T ss_pred ecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccc
Confidence 34444555443 556665 667777777777777777777777777777777777755555557777777777777654
Q ss_pred C-cccccccccCCCCccEEEeeCCCCCCccCcccc-CCcccEEEecCCCCCCccccccCCCCCCcEEEecCccCCccCcc
Q 045458 504 R-LREIHPSLLLHSKLVILNLTGCTSLATLPGKIF-MKSVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTAIGELPLS 581 (1170)
Q Consensus 504 ~-l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~ 581 (1170)
. -..+|+.|.++..|..|+|+. +.++..|..+. .+++-.|+|++|++...-...+-++..|-.|+|++|+++.+|..
T Consensus 90 LKnsGiP~diF~l~dLt~lDLSh-NqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ 168 (1255)
T KOG0444|consen 90 LKNSGIPTDIFRLKDLTILDLSH-NQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQ 168 (1255)
T ss_pred cccCCCCchhcccccceeeecch-hhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHH
Confidence 2 235677777777777777777 45666666555 66666666666643332223456677777777777777777777
Q ss_pred hhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCC-CCcchhhcCCcccCeEeccCcCCCccCccccCCCCCC
Q 045458 582 IELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKL-KKFPEIVESMEDLSELFLDGTSITEVPSSIELLTGLN 660 (1170)
Q Consensus 582 i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~-~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~ 660 (1170)
+..+.+|++|+|++|.....--..+..+++|+.|.+++...+ ..+|..+..+.+|..++++.|++..+|..+-.+++|+
T Consensus 169 ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~Lr 248 (1255)
T KOG0444|consen 169 IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLR 248 (1255)
T ss_pred HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhh
Confidence 777777788877777643221123335566666666665432 3456666666666666666666666655555555555
Q ss_pred EEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCCCccccCCCCCcEEEecCCCC
Q 045458 661 VLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQPPSGIFHMKNLKALYFRGCKG 740 (1170)
Q Consensus 661 ~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~ 740 (1170)
.|+|++|+ . ..+....+.-.+|+.|+++.|.++.+|..+..++.|+.|.+.+|+.
T Consensus 249 rLNLS~N~------------------------i-teL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL 303 (1255)
T KOG0444|consen 249 RLNLSGNK------------------------I-TELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKL 303 (1255)
T ss_pred eeccCcCc------------------------e-eeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcc
Confidence 55555443 2 2222223334678888888888888888888888888888888774
Q ss_pred CCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCcccchhhh
Q 045458 741 SPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVSLPASIS 820 (1170)
Q Consensus 741 ~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~lp~~i~ 820 (1170)
.- ..+|+.++.+..|+.+..++|.+ +..|+.++.|..|+.|.|++|.+.++|+.|.
T Consensus 304 ~F----------------------eGiPSGIGKL~~Levf~aanN~L--ElVPEglcRC~kL~kL~L~~NrLiTLPeaIH 359 (1255)
T KOG0444|consen 304 TF----------------------EGIPSGIGKLIQLEVFHAANNKL--ELVPEGLCRCVKLQKLKLDHNRLITLPEAIH 359 (1255)
T ss_pred cc----------------------cCCccchhhhhhhHHHHhhcccc--ccCchhhhhhHHHHHhcccccceeechhhhh
Confidence 31 25788888899999999999988 4699999999999999999999999999999
Q ss_pred cCCCCCEeeccCccCCCcCCCCC
Q 045458 821 RLSKLECLNLNGCKKLQSLPPLP 843 (1170)
Q Consensus 821 ~l~~L~~L~L~~c~~L~~lp~lp 843 (1170)
-|+.|+.|++.++++|. +|+-|
T Consensus 360 lL~~l~vLDlreNpnLV-MPPKP 381 (1255)
T KOG0444|consen 360 LLPDLKVLDLRENPNLV-MPPKP 381 (1255)
T ss_pred hcCCcceeeccCCcCcc-CCCCc
Confidence 99999999999999987 44444
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=3.6e-30 Score=272.07 Aligned_cols=258 Identities=26% Similarity=0.297 Sum_probs=222.0
Q ss_pred CccEEeecCccc---CCchhcccCCceEEEcCCCCCCCCCCCC-CCCceeEEEccCCChHHHhhcCCCCCCCcEEEcCCC
Q 045458 404 NLRLLGICNLKL---PEGLECLSNKLRLLDWPGYPLKSLPPNL-QLDKTIEFKMLCSRIEELWKGIKSLNMLKVMKVSYS 479 (1170)
Q Consensus 404 ~Lr~L~l~~~~l---~~~~~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~s~i~~L~~~l~~l~~L~~L~Ls~~ 479 (1170)
.|..|+++++.+ ...+..++ .|.+|+.+.+.+..+|+.+ .+..++.++.+++++.++|+.+..+..|+.++.+++
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~-~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLA-CLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred chhhhhhccCchhhccHhhhccc-ceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc
Confidence 355566777653 44566665 5899999999999999998 899999999999999999999999999999999999
Q ss_pred CCCCcCCCCCCCCCccEEEeeccCCcccccccccCCCCccEEEeeCCCCCCccCccccCCcccEEEecCCCCCCcccccc
Q 045458 480 QSLIKIPDFTGVPNLEKLYLEGCTRLREIHPSLLLHSKLVILNLTGCTSLATLPGKIFMKSVKKLVLSGCSKLKKFPKIV 559 (1170)
Q Consensus 480 ~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~~~~l~~~l 559 (1170)
....-.++++.+..|+.|+..+| .+..+|.+++.+.+|..|++.++......|..+.++.|++|+...| .++.+|..+
T Consensus 125 ~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~l 202 (565)
T KOG0472|consen 125 ELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPEL 202 (565)
T ss_pred ceeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChhh
Confidence 97777778999999999998875 6788999999999999999999554444444455999999998775 578899999
Q ss_pred CCCCCCcEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCcccc-CCCCcccEEEeeCCCCCCCcchhhcCCcccCe
Q 045458 560 GNMECLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTI-SSLKCLRSLVLSGCSKLKKFPEIVESMEDLSE 638 (1170)
Q Consensus 560 ~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l-~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~ 638 (1170)
+.|..|..|++..|++..+| .|..+..|+.|++..|. ++.+|... .++++|..|++..| .++..|+.++-+.+|+.
T Consensus 203 g~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~r 279 (565)
T KOG0472|consen 203 GGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLER 279 (565)
T ss_pred cchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhhh
Confidence 99999999999999999999 88999999999998875 45566554 48999999999986 46788999999999999
Q ss_pred EeccCcCCCccCccccCCCCCCEEeccCCc
Q 045458 639 LFLDGTSITEVPSSIELLTGLNVLNLNDCK 668 (1170)
Q Consensus 639 L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~ 668 (1170)
|++++|.++.+|.+++++ +|+.|.+.+|+
T Consensus 280 LDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 280 LDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred hcccCCccccCCcccccc-eeeehhhcCCc
Confidence 999999999999999999 99999999985
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=2.2e-26 Score=253.67 Aligned_cols=364 Identities=24% Similarity=0.240 Sum_probs=237.5
Q ss_pred CCceeEEEccCCChHHH-hhcCCCCCCCcEEEcCCCCCCCcCCCCCC-CCCccEEEeeccCCcccccccccCCCCccEEE
Q 045458 445 LDKTIEFKMLCSRIEEL-WKGIKSLNMLKVMKVSYSQSLIKIPDFTG-VPNLEKLYLEGCTRLREIHPSLLLHSKLVILN 522 (1170)
Q Consensus 445 l~~L~~L~L~~s~i~~L-~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~-l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~ 522 (1170)
+..-+.|++++|++..+ +.++.++++|+.+++.+|. +..+|.|+. ..+|+.|+|.+|..-.--..++..++.|+.|+
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~-Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE-LTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccch-hhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 33444455555555543 3445555555555555554 445555444 23366666655433333334455566666666
Q ss_pred eeCCCCCCccCcccc--CCcccEEEecCCCCCCccccccCCCCCCcEEEecCccCCccCcc-hhcCCCCCEEeccCCCCC
Q 045458 523 LTGCTSLATLPGKIF--MKSVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTAIGELPLS-IELLSKLVSLDLNNCKNF 599 (1170)
Q Consensus 523 L~~c~~l~~lp~~~~--l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~-i~~l~~L~~L~L~~~~~l 599 (1170)
|+. +.+..+|...+ -.++++|+|++|.+...-...|.++.+|..|.|+.|.+..+|.. +.+|++|+.|+|..|..-
T Consensus 156 LSr-N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 156 LSR-NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred hhh-chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence 665 33444444333 45778888888877666666777888888888888888888764 455888888888887643
Q ss_pred CcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCCccC-ccccCCCCCCEEeccCCcCCccccccCC
Q 045458 600 KNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSITEVP-SSIELLTGLNVLNLNDCKNLVRIPDSIN 678 (1170)
Q Consensus 600 ~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~l~ 678 (1170)
..--..+..+++|+.|.|..|..-+--...+-.+.++++|+|..|.+..+. .++-.++.|+.|++++|.....-+++..
T Consensus 235 ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws 314 (873)
T KOG4194|consen 235 IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS 314 (873)
T ss_pred eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh
Confidence 332346777888888888877665555556677778888888888877664 3567778888888888777666666666
Q ss_pred CCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCCCcc-ccCCCCCcEEEecCCCCCCCCCCcccCccccccc
Q 045458 679 GLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQPPSG-IFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIK 757 (1170)
Q Consensus 679 ~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~ 757 (1170)
-.++|+.|+|+.|....--+..+..+..|++|+|++|.+..+..+ +..+++|+.|+|+.|...-...
T Consensus 315 ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IE------------ 382 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIE------------ 382 (873)
T ss_pred hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEe------------
Confidence 777888888887766655566677777788888888887766554 3457778888887776331000
Q ss_pred ccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCccc-chhhhcCCCCCEeeccC
Q 045458 758 RSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVSL-PASISRLSKLECLNLNG 832 (1170)
Q Consensus 758 ~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~ 832 (1170)
.-...+.++++|+.|.+.+|++.. ..-.++.++++|++|+|.+|.+.++ |..+..+ .|++|.+..
T Consensus 383 --------Daa~~f~gl~~LrkL~l~gNqlk~-I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 383 --------DAAVAFNGLPSLRKLRLTGNQLKS-IPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred --------cchhhhccchhhhheeecCceeee-cchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 011225667788888888887732 2334677788888888888877765 3455666 777776653
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=2e-28 Score=258.92 Aligned_cols=438 Identities=23% Similarity=0.276 Sum_probs=335.9
Q ss_pred CceEEEcCCCCCCCCCCCC-CCCceeEEEccCCChHHHhhcCCCCCCCcEEEcCCCCCCCcCCCCCCCCCccEEEeeccC
Q 045458 425 KLRLLDWPGYPLKSLPPNL-QLDKTIEFKMLCSRIEELWKGIKSLNMLKVMKVSYSQSLIKIPDFTGVPNLEKLYLEGCT 503 (1170)
Q Consensus 425 ~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~s~i~~L~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~ 503 (1170)
.|..|.+++|.++.+..+. .+..|.+|++.++++.++|..+..+..++.+++++++....++.+..+++|.+|+.+.+
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n- 124 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN- 124 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc-
Confidence 4788899999999888888 99999999999999999999999999999999999986666667999999999999985
Q ss_pred CcccccccccCCCCccEEEeeCCCCCCccCcccc-CCcccEEEecCCCCCCccccccCCCCCCcEEEecCccCCccCcch
Q 045458 504 RLREIHPSLLLHSKLVILNLTGCTSLATLPGKIF-MKSVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTAIGELPLSI 582 (1170)
Q Consensus 504 ~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i 582 (1170)
.+.+++++++.+..|..|+..+ +.+.++|..+. +.+|..|++.+|......|..+ +|+.|++|+...|-++.+|..+
T Consensus 125 ~~~el~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~tlP~~l 202 (565)
T KOG0472|consen 125 ELKELPDSIGRLLDLEDLDATN-NQISSLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLETLPPEL 202 (565)
T ss_pred ceeecCchHHHHhhhhhhhccc-cccccCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhhcCChhh
Confidence 6788999999999999999888 55677777766 9999999999986554444444 4999999999999999999999
Q ss_pred hcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchh-hcCCcccCeEeccCcCCCccCccccCCCCCCE
Q 045458 583 ELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEI-VESMEDLSELFLDGTSITEVPSSIELLTGLNV 661 (1170)
Q Consensus 583 ~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~-~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~ 661 (1170)
+.+.+|..|++..|+ +..+| .|..+..|++|+++.|. ++.+|.. ...+++|..|++.+|+++++|..+..+.+|+.
T Consensus 203 g~l~~L~~LyL~~Nk-i~~lP-ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~r 279 (565)
T KOG0472|consen 203 GGLESLELLYLRRNK-IRFLP-EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLER 279 (565)
T ss_pred cchhhhHHHHhhhcc-cccCC-CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhh
Confidence 999999999999987 55677 78899999999998865 4455555 45899999999999999999999999999999
Q ss_pred EeccCCcCCccccccCCCCCCCCEEEeeCcCCCC-------------------------------------CCc----cc
Q 045458 662 LNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLE-------------------------------------NVP----ET 700 (1170)
Q Consensus 662 L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~-------------------------------------~l~----~~ 700 (1170)
|++++|. +..+|.+++++ +|+.|-+.||+.-. ..+ ..
T Consensus 280 LDlSNN~-is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~ 357 (565)
T KOG0472|consen 280 LDLSNND-ISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPD 357 (565)
T ss_pred hcccCCc-cccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccc
Confidence 9999865 66788889999 99999999986310 000 01
Q ss_pred cCCCCCCcEEEccCccCCCCCccccCCCC---CcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCc
Q 045458 701 LGQVESLEELHISGTAIRQPPSGIFHMKN---LKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSL 777 (1170)
Q Consensus 701 l~~l~~L~~L~L~~~~i~~lp~~l~~l~~---L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L 777 (1170)
...+.+.+.|++++-.++.+|...+.-.. ....++++|+..+.+........+...-...+....-.|..++.+++|
T Consensus 358 ~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kL 437 (565)
T KOG0472|consen 358 IYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKL 437 (565)
T ss_pred hhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcc
Confidence 12345677788888888888876654333 566777777755433322222211111112222333456668889999
Q ss_pred CEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCcccchhhhcCCCCCEeeccCccCCCcCCC----CCcccceeeccC
Q 045458 778 TKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVSLPASISRLSKLECLNLNGCKKLQSLPP----LPARMRIASVNG 853 (1170)
Q Consensus 778 ~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~----lp~sL~~L~i~~ 853 (1170)
..|+|++|-+.+ +|..++.+..|+.|+++.|.|..+|.++..+..|+.+-.++ ..++++++ ...+|..|++.+
T Consensus 438 t~L~L~NN~Ln~--LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~n 514 (565)
T KOG0472|consen 438 TFLDLSNNLLND--LPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQN 514 (565)
T ss_pred eeeecccchhhh--cchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCC
Confidence 999999998854 89999999999999999999999988776666555555544 45666654 234667777765
Q ss_pred CcCCcccCC-ccccccccccee
Q 045458 854 CASLETLSD-PLELNKLKDFEI 874 (1170)
Q Consensus 854 C~~L~~l~~-~~~~~~L~~l~i 874 (1170)
..|+++|. ..+..+++.+.+
T Consensus 515 -Ndlq~IPp~LgnmtnL~hLeL 535 (565)
T KOG0472|consen 515 -NDLQQIPPILGNMTNLRHLEL 535 (565)
T ss_pred -CchhhCChhhccccceeEEEe
Confidence 45666653 233445554443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=3.9e-27 Score=260.27 Aligned_cols=372 Identities=22% Similarity=0.314 Sum_probs=245.7
Q ss_pred CCCCCCcEEEcCCCCCC-CcCC-CCCCCCCccEEEeeccCCcccccccccCCCCccEEEeeCCCCCCccCcccc-CCccc
Q 045458 466 KSLNMLKVMKVSYSQSL-IKIP-DFTGVPNLEKLYLEGCTRLREIHPSLLLHSKLVILNLTGCTSLATLPGKIF-MKSVK 542 (1170)
Q Consensus 466 ~~l~~L~~L~Ls~~~~l-~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~ 542 (1170)
.-|+-.|-+|+++|... ...| +...++.++.|.|.. +.+..+|..++.+.+|.+|.+..|+ +.++...+. ++.|+
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnr-t~L~~vPeEL~~lqkLEHLs~~HN~-L~~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNR-TKLEQVPEELSRLQKLEHLSMAHNQ-LISVHGELSDLPRLR 81 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEech-hhhhhChHHHHHHhhhhhhhhhhhh-hHhhhhhhccchhhH
Confidence 44666777888888765 3344 466788888888877 5778888888888888888888854 344444343 77777
Q ss_pred EEEecCCCC-CCccccccCCCCCCcEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCcc-ccCCCCcccEEEeeCC
Q 045458 543 KLVLSGCSK-LKKFPKIVGNMECLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPV-TISSLKCLRSLVLSGC 620 (1170)
Q Consensus 543 ~L~L~~~~~-~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~L~~~ 620 (1170)
.+.++.|+. ...+|..+-.+..|..|+|++|.+++.|..+.+-+++-.|+|++|. ++.+|. .+.++..|-.|+|+
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS-- 158 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLS-- 158 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccc--
Confidence 777776653 3356777777777777777777777777777777777777777764 333443 23344444455554
Q ss_pred CCCCCcchhhcCCcccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCC-CCCCcc
Q 045458 621 SKLKKFPEIVESMEDLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFK-LENVPE 699 (1170)
Q Consensus 621 ~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~-l~~l~~ 699 (1170)
+|.+..+|..+..+.+|+.|.|++|+....--..+..+++|++|.+++... +..+|.
T Consensus 159 ----------------------~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt 216 (1255)
T KOG0444|consen 159 ----------------------NNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT 216 (1255)
T ss_pred ----------------------cchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC
Confidence 455555555555555555555555543222111122245555555554432 234555
Q ss_pred ccCCCCCCcEEEccCccCCCCCccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCE
Q 045458 700 TLGQVESLEELHISGTAIRQPPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTK 779 (1170)
Q Consensus 700 ~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~ 779 (1170)
++..+.+|..++++.|++..+|..+..+++|+.|+|++|+.+........-..+..++++.|.+ ..+|..++.++.|+.
T Consensus 217 sld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQL-t~LP~avcKL~kL~k 295 (1255)
T KOG0444|consen 217 SLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQL-TVLPDAVCKLTKLTK 295 (1255)
T ss_pred chhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchh-ccchHHHhhhHHHHH
Confidence 5555555555555555555555555555555555555555433211111111122222232222 368888999999999
Q ss_pred EeccCCCCCCCCCcCccCCCCCCCEEECcCCCCcccchhhhcCCCCCEeeccCccCCCcCCC---CCcccceeeccCCcC
Q 045458 780 LDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVSLPASISRLSKLECLNLNGCKKLQSLPP---LPARMRIASVNGCAS 856 (1170)
Q Consensus 780 L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~---lp~sL~~L~i~~C~~ 856 (1170)
|.+.+|++.-+.+|..++.+..|+.+...+|++.-+|+++..+++|+.|.|++ +.|-.+|+ +.+-|+.|++++.|+
T Consensus 296 Ly~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 296 LYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred HHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcC
Confidence 99999999888999999999999999999999999999999999999999986 55677886 667899999999999
Q ss_pred CcccCCcccc
Q 045458 857 LETLSDPLEL 866 (1170)
Q Consensus 857 L~~l~~~~~~ 866 (1170)
|..-|.+..-
T Consensus 375 LVMPPKP~da 384 (1255)
T KOG0444|consen 375 LVMPPKPNDA 384 (1255)
T ss_pred ccCCCCcchh
Confidence 9987766543
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=4.9e-26 Score=250.99 Aligned_cols=390 Identities=20% Similarity=0.175 Sum_probs=286.1
Q ss_pred ccEEeecCcccCCc-----hhcccCCceEEEcCCCCCCCCCCCC--CCCceeEEEccCCChHHHhhcCCCCCCCcEEEcC
Q 045458 405 LRLLGICNLKLPEG-----LECLSNKLRLLDWPGYPLKSLPPNL--QLDKTIEFKMLCSRIEELWKGIKSLNMLKVMKVS 477 (1170)
Q Consensus 405 Lr~L~l~~~~l~~~-----~~~l~~~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~s~i~~L~~~l~~l~~L~~L~Ls 477 (1170)
-+.|+.++..++.- ...+|..-+.|++++|.+..+...+ ++.+|++++|.+|.+..+|.......+|+.|+|.
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLR 133 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeee
Confidence 34555555555432 3456666777888888887776664 7888888888888888888877777888888888
Q ss_pred CCCCCCcCC-CCCCCCCccEEEeeccCCccccc-ccccCCCCccEEEeeCCCCCCccCcc-cc-CCcccEEEecCCCCCC
Q 045458 478 YSQSLIKIP-DFTGVPNLEKLYLEGCTRLREIH-PSLLLHSKLVILNLTGCTSLATLPGK-IF-MKSVKKLVLSGCSKLK 553 (1170)
Q Consensus 478 ~~~~l~~~~-~~~~l~~L~~L~L~~~~~l~~~~-~~i~~l~~L~~L~L~~c~~l~~lp~~-~~-l~~L~~L~L~~~~~~~ 553 (1170)
+|.+..... .++.++.||.|||+.|. +..++ +++-.-.++++|+|++|. ++.+... +. +.+|..|.|+.|....
T Consensus 134 ~N~I~sv~se~L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNritt 211 (873)
T KOG4194|consen 134 HNLISSVTSEELSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRITT 211 (873)
T ss_pred ccccccccHHHHHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCcccc
Confidence 876433322 36677888888888753 44443 344444678888888754 3333322 22 7788888888887666
Q ss_pred ccccccCCCCCCcEEEecCccCCcc-CcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcC
Q 045458 554 KFPKIVGNMECLSKLLLDGTAIGEL-PLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVES 632 (1170)
Q Consensus 554 ~l~~~l~~l~~L~~L~L~~~~i~~l-~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~ 632 (1170)
.-+..|.++++|+.|+|..|.|+.. -..+..|++|+.|.+..|...+.-...+..+.++++|+|..|+....-..++-+
T Consensus 212 Lp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg 291 (873)
T KOG4194|consen 212 LPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG 291 (873)
T ss_pred cCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc
Confidence 6666778888888888888888776 456788888888888888876666667778888899999888877777778888
Q ss_pred CcccCeEeccCcCCCcc-CccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEE
Q 045458 633 MEDLSELFLDGTSITEV-PSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELH 711 (1170)
Q Consensus 633 l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~ 711 (1170)
+..|+.|+++.|.|..+ +++.+..++|+.|+|+.|.....-+.++..+..|++|+|+.|+.-.--...+..+.+|++|+
T Consensus 292 Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~Ld 371 (873)
T KOG4194|consen 292 LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLD 371 (873)
T ss_pred cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhc
Confidence 88999999999988865 45667788899999998887766667788888999999988865444445566788999999
Q ss_pred ccCccCC----CCCccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCC
Q 045458 712 ISGTAIR----QPPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDL 787 (1170)
Q Consensus 712 L~~~~i~----~lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l 787 (1170)
|+.|.+. .-...+..+++|+.|.+.||+.... -...+.++++|++|+|.+|.+
T Consensus 372 Lr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I-----------------------~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 372 LRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSI-----------------------PKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred CcCCeEEEEEecchhhhccchhhhheeecCceeeec-----------------------chhhhccCcccceecCCCCcc
Confidence 9988765 2233455689999999999885431 112477889999999999988
Q ss_pred CCCCCcCccCCCCCCCEEECcC------CCCcccchhhhc
Q 045458 788 GEGFIPNDIGNLRSLKVLCLSN------NSFVSLPASISR 821 (1170)
Q Consensus 788 ~~~~~~~~l~~l~sL~~L~Ls~------n~l~~lp~~i~~ 821 (1170)
. ..-|+++..+ .|++|.+.. |.+.-++.|+..
T Consensus 429 a-SIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~ 466 (873)
T KOG4194|consen 429 A-SIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYR 466 (873)
T ss_pred e-eecccccccc-hhhhhhhcccceEEeccHHHHHHHHHh
Confidence 4 4567888888 899988765 445556666543
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=3.8e-23 Score=271.35 Aligned_cols=324 Identities=31% Similarity=0.464 Sum_probs=210.7
Q ss_pred hhcCCCCC-CCcEEEcCCCCCCCcCCCCCCCCCccEEEeeccCCcccccccccCCCCccEEEeeCCCCCCccCccccCCc
Q 045458 462 WKGIKSLN-MLKVMKVSYSQSLIKIPDFTGVPNLEKLYLEGCTRLREIHPSLLLHSKLVILNLTGCTSLATLPGKIFMKS 540 (1170)
Q Consensus 462 ~~~l~~l~-~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~ 540 (1170)
|.++..++ +|+.|++.++. +..+|.-....+|++|++.++ .+..++.++..+++|+.|++++|..++.+|.
T Consensus 581 p~~~~~lp~~Lr~L~~~~~~-l~~lP~~f~~~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~------ 652 (1153)
T PLN03210 581 PEGFDYLPPKLRLLRWDKYP-LRCMPSNFRPENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD------ 652 (1153)
T ss_pred CcchhhcCcccEEEEecCCC-CCCCCCcCCccCCcEEECcCc-cccccccccccCCCCCEEECCCCCCcCcCCc------
Confidence 33444332 35555555443 233333223445555555543 2344444444455555555555444444443
Q ss_pred ccEEEecCCCCCCccccccCCCCCCcEEEecCc-cCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeC
Q 045458 541 VKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGT-AIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSG 619 (1170)
Q Consensus 541 L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~-~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~ 619 (1170)
++.+++|++|++.+| .+..+|.++..+++|+.|++++|..++.+|..+ ++++|+.|++++
T Consensus 653 ------------------ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsg 713 (1153)
T PLN03210 653 ------------------LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSG 713 (1153)
T ss_pred ------------------cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCC
Confidence 344445555555443 245566667777777788888887777777655 678888888888
Q ss_pred CCCCCCcchhhcCCcccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCcc
Q 045458 620 CSKLKKFPEIVESMEDLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPE 699 (1170)
Q Consensus 620 ~~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~ 699 (1170)
|..+..+|.. ..+|+.|++++|.+..+|..+ .+++|+.|.+.++.... ++..+..++ +.
T Consensus 714 c~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~-l~~~~~~l~----------------~~ 772 (1153)
T PLN03210 714 CSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEK-LWERVQPLT----------------PL 772 (1153)
T ss_pred CCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhh-ccccccccc----------------hh
Confidence 8877777654 457888888888888888765 56777777776654221 111111110 00
Q ss_pred ccCCCCCCcEEEccCcc-CCCCCccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcC
Q 045458 700 TLGQVESLEELHISGTA-IRQPPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLT 778 (1170)
Q Consensus 700 ~l~~l~~L~~L~L~~~~-i~~lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~ 778 (1170)
....+++|+.|++++|. +..+|.+++++++|+.|++.+|.... .+|..+ .+++|+
T Consensus 773 ~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~-----------------------~LP~~~-~L~sL~ 828 (1153)
T PLN03210 773 MTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE-----------------------TLPTGI-NLESLE 828 (1153)
T ss_pred hhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC-----------------------eeCCCC-CccccC
Confidence 11123567777777764 44677778888888888888876432 234433 678999
Q ss_pred EEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCcccchhhhcCCCCCEeeccCccCCCcCCCCC---cccceeeccCCc
Q 045458 779 KLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVSLPASISRLSKLECLNLNGCKKLQSLPPLP---ARMRIASVNGCA 855 (1170)
Q Consensus 779 ~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp---~sL~~L~i~~C~ 855 (1170)
.|++++|.... .+|. ..++|+.|+|++|.++.+|.++..+++|+.|+|++|++++.+|..+ ++|+.+++.+|+
T Consensus 829 ~L~Ls~c~~L~-~~p~---~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 829 SLDLSGCSRLR-TFPD---ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred EEECCCCCccc-cccc---cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 99999997542 2343 3478999999999999999999999999999999999999998754 467788999999
Q ss_pred CCcccC
Q 045458 856 SLETLS 861 (1170)
Q Consensus 856 ~L~~l~ 861 (1170)
+|+.++
T Consensus 905 ~L~~~~ 910 (1153)
T PLN03210 905 ALTEAS 910 (1153)
T ss_pred cccccc
Confidence 998765
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=3.5e-25 Score=257.67 Aligned_cols=410 Identities=22% Similarity=0.252 Sum_probs=177.4
Q ss_pred CccEEeecCccc---CCchhcccCCceEEEcCCCCCCCCCCCC-CCCceeEEEccCCChHHHhhcCCCCCCCcEEEcCCC
Q 045458 404 NLRLLGICNLKL---PEGLECLSNKLRLLDWPGYPLKSLPPNL-QLDKTIEFKMLCSRIEELWKGIKSLNMLKVMKVSYS 479 (1170)
Q Consensus 404 ~Lr~L~l~~~~l---~~~~~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~s~i~~L~~~l~~l~~L~~L~Ls~~ 479 (1170)
+|+.|+++++++ |..+..++ +|+.|+++.|.+.+.|... ++.+|++|+|.+|..+.+|.++..+++|+.|++++|
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~-~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N 124 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLS-HLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFN 124 (1081)
T ss_pred eeEEeeccccccccCCchhhhHH-HHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchh
Confidence 355555555542 23333332 4555555555555555444 555555555555555555555555555555555555
Q ss_pred CCCCcCCCCCCCCCccEEEeeccCCcccccccccCCCCccEEEeeCCCCCCccCccccCCcccEEEecCCCCCCcccccc
Q 045458 480 QSLIKIPDFTGVPNLEKLYLEGCTRLREIHPSLLLHSKLVILNLTGCTSLATLPGKIFMKSVKKLVLSGCSKLKKFPKIV 559 (1170)
Q Consensus 480 ~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~~~~l~~~l 559 (1170)
.....++.+..+..++.+..++|..+..++.. .++.+++..+.....++..+
T Consensus 125 ~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~----------------------------~ik~~~l~~n~l~~~~~~~i 176 (1081)
T KOG0618|consen 125 HFGPIPLVIEVLTAEEELAASNNEKIQRLGQT----------------------------SIKKLDLRLNVLGGSFLIDI 176 (1081)
T ss_pred ccCCCchhHHhhhHHHHHhhhcchhhhhhccc----------------------------cchhhhhhhhhcccchhcch
Confidence 54333334455555555555554222111111 13444444444444444444
Q ss_pred CCCCCCcEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeE
Q 045458 560 GNMECLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSEL 639 (1170)
Q Consensus 560 ~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L 639 (1170)
.++.+ .|++..|++. ...+..+.+|+.|....+.... ..-.-++|+.|....|......+ .....+|+.+
T Consensus 177 ~~l~~--~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls~----l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~ 246 (1081)
T KOG0618|consen 177 YNLTH--QLDLRYNEME--VLDLSNLANLEVLHCERNQLSE----LEISGPSLTALYADHNPLTTLDV--HPVPLNLQYL 246 (1081)
T ss_pred hhhhe--eeecccchhh--hhhhhhccchhhhhhhhcccce----EEecCcchheeeeccCcceeecc--ccccccceee
Confidence 44443 4455555444 2223334444444443332211 11122344444444444332111 1112344445
Q ss_pred eccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCC
Q 045458 640 FLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQ 719 (1170)
Q Consensus 640 ~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~ 719 (1170)
+++.+.+..+|+|++.+.+|+.+...+|.. ..+|..+....+|+.|.+..| .++.+|...+.+.+|+.|++..|.+..
T Consensus 247 dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~L~~ 324 (1081)
T KOG0618|consen 247 DISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNNLPS 324 (1081)
T ss_pred ecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhccccc
Confidence 555555555555555555555555444433 444444444444444444444 334444444444455555555555444
Q ss_pred CCccccCCC--CCcEEEecCCCCCCCCCC-cccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCcc
Q 045458 720 PPSGIFHMK--NLKALYFRGCKGSPSSTS-WSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPNDI 796 (1170)
Q Consensus 720 lp~~l~~l~--~L~~L~L~~c~~~~~~~~-~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l 796 (1170)
+|..+..-. .|..|+.+.++....... -.....+..+.+..|.+....-+.+.++.+|+.|+|++|.+.. +....+
T Consensus 325 lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~-fpas~~ 403 (1081)
T KOG0618|consen 325 LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS-FPASKL 403 (1081)
T ss_pred cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc-CCHHHH
Confidence 444222111 122333332222111100 0001112222233333333333334455555555555554421 111234
Q ss_pred CCCCCCCEEECcCCCCcccchh----------------------hhcCCCCCEeeccCccCCCc--CCC-CC-cccceee
Q 045458 797 GNLRSLKVLCLSNNSFVSLPAS----------------------ISRLSKLECLNLNGCKKLQS--LPP-LP-ARMRIAS 850 (1170)
Q Consensus 797 ~~l~sL~~L~Ls~n~l~~lp~~----------------------i~~l~~L~~L~L~~c~~L~~--lp~-lp-~sL~~L~ 850 (1170)
.++..|++|+||||.++.+|.+ +.+++.|+.+|++. +.|+. +|. +| +.|++|+
T Consensus 404 ~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLd 482 (1081)
T KOG0618|consen 404 RKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLD 482 (1081)
T ss_pred hchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEeccc-chhhhhhhhhhCCCcccceee
Confidence 4455555555555555555544 44555555555553 22322 222 44 5666666
Q ss_pred ccCCcC
Q 045458 851 VNGCAS 856 (1170)
Q Consensus 851 i~~C~~ 856 (1170)
+.|.+.
T Consensus 483 lSGN~~ 488 (1081)
T KOG0618|consen 483 LSGNTR 488 (1081)
T ss_pred ccCCcc
Confidence 666553
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=9.2e-25 Score=254.20 Aligned_cols=422 Identities=20% Similarity=0.232 Sum_probs=298.2
Q ss_pred cchhhhccCCCccEEeecCcccCCchhccc--CCceEEEcCCCCCCCCCCCC-CCCceeEEEccCCChHHHhhcCCCCCC
Q 045458 394 ASAKAFSKMTNLRLLGICNLKLPEGLECLS--NKLRLLDWPGYPLKSLPPNL-QLDKTIEFKMLCSRIEELWKGIKSLNM 470 (1170)
Q Consensus 394 ~~~~~f~~~~~Lr~L~l~~~~l~~~~~~l~--~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~s~i~~L~~~l~~l~~ 470 (1170)
-.+..+..+..|+.|.++.+.+........ ++|++|.+.++.+..+|..+ .+++|++|+++.|.....|..+..+..
T Consensus 59 ~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~ 138 (1081)
T KOG0618|consen 59 SFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTA 138 (1081)
T ss_pred cCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhH
Confidence 344566778889999998886433222222 47999999999999999999 999999999999999999999999999
Q ss_pred CcEEEcCCCCCCCcCCCCCCCCCccEEEeeccCCcccccccccCCCCccEEEeeCCCCCCccCccccCCcccEEEecCCC
Q 045458 471 LKVMKVSYSQSLIKIPDFTGVPNLEKLYLEGCTRLREIHPSLLLHSKLVILNLTGCTSLATLPGKIFMKSVKKLVLSGCS 550 (1170)
Q Consensus 471 L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~ 550 (1170)
+..+..++|..+..++..+ ++.+++..+.....++..+..+.. .|+|+++... ......+.+|+.|....|.
T Consensus 139 ~~~~~~s~N~~~~~lg~~~----ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ 210 (1081)
T KOG0618|consen 139 EEELAASNNEKIQRLGQTS----IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME--VLDLSNLANLEVLHCERNQ 210 (1081)
T ss_pred HHHHhhhcchhhhhhcccc----chhhhhhhhhcccchhcchhhhhe--eeecccchhh--hhhhhhccchhhhhhhhcc
Confidence 9999999984333333332 888888888777778878877777 7889886544 2222235666666555443
Q ss_pred CCCccccccCCCCCCcEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhh
Q 045458 551 KLKKFPKIVGNMECLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIV 630 (1170)
Q Consensus 551 ~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~ 630 (1170)
... ..-.-++|+.|+.+.|.+..+. .-....+|++++++.+. +..+|..+..+.+|+.|....|.. ..+|..+
T Consensus 211 ls~----l~~~g~~l~~L~a~~n~l~~~~-~~p~p~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri 283 (1081)
T KOG0618|consen 211 LSE----LEISGPSLTALYADHNPLTTLD-VHPVPLNLQYLDISHNN-LSNLPEWIGACANLEALNANHNRL-VALPLRI 283 (1081)
T ss_pred cce----EEecCcchheeeeccCcceeec-cccccccceeeecchhh-hhcchHHHHhcccceEecccchhH-HhhHHHH
Confidence 211 1122346777777777665322 12345678888888875 556778888888888888888765 6777778
Q ss_pred cCCcccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccC-CCCC-CCCEEEeeCcCCCCCCcc-ccCCCCCC
Q 045458 631 ESMEDLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSI-NGLK-SLQSLNLSGCFKLENVPE-TLGQVESL 707 (1170)
Q Consensus 631 ~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l-~~l~-~L~~L~L~~c~~l~~l~~-~l~~l~~L 707 (1170)
....+|+.|.+..|.++.+|...+.+++|++|+|..|. +..+|+.+ ..+. +|..|+.+.+ ++...|. .-..++.|
T Consensus 284 ~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n-~l~~lp~~~e~~~~~L 361 (1081)
T KOG0618|consen 284 SRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSN-KLSTLPSYEENNHAAL 361 (1081)
T ss_pred hhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhc-cccccccccchhhHHH
Confidence 88888888888888888888888888888888888765 44444432 2222 2555555544 3333331 11235678
Q ss_pred cEEEccCccCCC-CCccccCCCCCcEEEecCCCCCC-CCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCC
Q 045458 708 EELHISGTAIRQ-PPSGIFHMKNLKALYFRGCKGSP-SSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDC 785 (1170)
Q Consensus 708 ~~L~L~~~~i~~-lp~~l~~l~~L~~L~L~~c~~~~-~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c 785 (1170)
+.|.+.+|.++. ...-+.++++|+.|+|++|.... +.........+..+.++.|.+. .+|..+..++.|+.|...+|
T Consensus 362 q~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN 440 (1081)
T KOG0618|consen 362 QELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSN 440 (1081)
T ss_pred HHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCC
Confidence 889999998884 34567788999999999998653 2223333344455566666553 56677777778888888777
Q ss_pred CCCCCCCcCccCCCCCCCEEECcCCCCcc--cchhhhcCCCCCEeeccCccCCC
Q 045458 786 DLGEGFIPNDIGNLRSLKVLCLSNNSFVS--LPASISRLSKLECLNLNGCKKLQ 837 (1170)
Q Consensus 786 ~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~--lp~~i~~l~~L~~L~L~~c~~L~ 837 (1170)
++. .+| .+..++.|+.+|++.|+++. +|..... ++|++|+++++..+.
T Consensus 441 ~l~--~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 441 QLL--SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLV 490 (1081)
T ss_pred cee--ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccc
Confidence 774 367 67889999999999999884 4443322 899999999998653
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=4.9e-15 Score=180.49 Aligned_cols=259 Identities=22% Similarity=0.263 Sum_probs=146.3
Q ss_pred CccEEEeeccCCcccccccccCCCCccEEEeeCCCCCCccCccccCCcccEEEecCCCCCCccccccCCCCCCcEEEecC
Q 045458 493 NLEKLYLEGCTRLREIHPSLLLHSKLVILNLTGCTSLATLPGKIFMKSVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDG 572 (1170)
Q Consensus 493 ~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~ 572 (1170)
+-..|+++++ .+..+|+.+. ++|+.|++.+| .++.+|.. +++|++|++++|. +..+|.. .++|+.|++.+
T Consensus 202 ~~~~LdLs~~-~LtsLP~~l~--~~L~~L~L~~N-~Lt~LP~l--p~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 202 GNAVLNVGES-GLTTLPDCLP--AHITTLVIPDN-NLTSLPAL--PPELRTLEVSGNQ-LTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCcEEEcCCC-CCCcCCcchh--cCCCEEEccCC-cCCCCCCC--CCCCcEEEecCCc-cCcccCc---ccccceeeccC
Confidence 3456677665 4556666554 35666666663 34445532 4555555555542 2233321 23445555555
Q ss_pred ccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCCccCcc
Q 045458 573 TAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSITEVPSS 652 (1170)
Q Consensus 573 ~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~ 652 (1170)
|.+..+|.. +++|+ .|++++|.. ..+|. .+++|+.|++++|.+..+|..
T Consensus 272 N~L~~Lp~l---p~~L~------------------------~L~Ls~N~L-t~LP~---~p~~L~~LdLS~N~L~~Lp~l 320 (788)
T PRK15387 272 NPLTHLPAL---PSGLC------------------------KLWIFGNQL-TSLPV---LPPGLQELSVSDNQLASLPAL 320 (788)
T ss_pred Cchhhhhhc---hhhcC------------------------EEECcCCcc-ccccc---cccccceeECCCCccccCCCC
Confidence 555444431 23344 444444432 22332 124555555555655555542
Q ss_pred ccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCCCccccCCCCCcE
Q 045458 653 IELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQPPSGIFHMKNLKA 732 (1170)
Q Consensus 653 i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~ 732 (1170)
..+|+.|++++|.. ..+|.. ..+|+.|++++|. +..+|.. ..+|+.|++++|.+..+|.. +.+|+.
T Consensus 321 ---p~~L~~L~Ls~N~L-~~LP~l---p~~Lq~LdLS~N~-Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~ 386 (788)
T PRK15387 321 ---PSELCKLWAYNNQL-TSLPTL---PSGLQELSVSDNQ-LASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKE 386 (788)
T ss_pred ---cccccccccccCcc-cccccc---ccccceEecCCCc-cCCCCCC---CcccceehhhccccccCccc---ccccce
Confidence 23455555655543 234421 2356677776653 3345542 24667777777777776653 346777
Q ss_pred EEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCC
Q 045458 733 LYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSF 812 (1170)
Q Consensus 733 L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l 812 (1170)
|++++|.... +|.. .++|+.|++++|.+.. +|.. +.+|+.|++++|++
T Consensus 387 LdLs~N~Lt~------------------------LP~l---~s~L~~LdLS~N~Lss--IP~l---~~~L~~L~Ls~NqL 434 (788)
T PRK15387 387 LIVSGNRLTS------------------------LPVL---PSELKELMVSGNRLTS--LPML---PSGLLSLSVYRNQL 434 (788)
T ss_pred EEecCCcccC------------------------CCCc---ccCCCEEEccCCcCCC--CCcc---hhhhhhhhhccCcc
Confidence 7777766332 2211 2468888888888753 5543 35678888888888
Q ss_pred cccchhhhcCCCCCEeeccCccCCCc
Q 045458 813 VSLPASISRLSKLECLNLNGCKKLQS 838 (1170)
Q Consensus 813 ~~lp~~i~~l~~L~~L~L~~c~~L~~ 838 (1170)
+.+|..+..+++|+.|+|++|+.-..
T Consensus 435 t~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 435 TRLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred cccChHHhhccCCCeEECCCCCCCch
Confidence 88888888888888888888875443
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.62 E-value=3e-15 Score=182.26 Aligned_cols=136 Identities=23% Similarity=0.295 Sum_probs=73.8
Q ss_pred CcEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCc
Q 045458 565 LSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGT 644 (1170)
Q Consensus 565 L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~ 644 (1170)
|+.|.+++|.+..+|.. ..+|+.|++++|.. ..+|.. ..+|+.|++++|... .+|.. ..+|+.|++++|
T Consensus 324 L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~L-s~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N 392 (788)
T PRK15387 324 LCKLWAYNNQLTSLPTL---PSGLQELSVSDNQL-ASLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGN 392 (788)
T ss_pred ccccccccCcccccccc---ccccceEecCCCcc-CCCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCC
Confidence 44455555555555431 23455555555432 233321 234555555554332 34432 235666666666
Q ss_pred CCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCC
Q 045458 645 SITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQ 719 (1170)
Q Consensus 645 ~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~ 719 (1170)
.+..+|.. .++|+.|++++|.. ..+|.. ..+|+.|++++|. +..+|..+..+++|+.|++++|.++.
T Consensus 393 ~Lt~LP~l---~s~L~~LdLS~N~L-ssIP~l---~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 393 RLTSLPVL---PSELKELMVSGNRL-TSLPML---PSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred cccCCCCc---ccCCCEEEccCCcC-CCCCcc---hhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCCCCc
Confidence 66666643 24566677776653 345542 2356667776664 34667777777777777777777663
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.59 E-value=9.1e-17 Score=171.27 Aligned_cols=278 Identities=22% Similarity=0.207 Sum_probs=198.9
Q ss_pred cCCchhcccCCceEEEcCCCCCCCCCCCC--CCCceeEEEccCCChHHH-hhcCCCCCCCcEEEcCCCCCCCcCCC--CC
Q 045458 415 LPEGLECLSNKLRLLDWPGYPLKSLPPNL--QLDKTIEFKMLCSRIEEL-WKGIKSLNMLKVMKVSYSQSLIKIPD--FT 489 (1170)
Q Consensus 415 l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~s~i~~L-~~~l~~l~~L~~L~Ls~~~~l~~~~~--~~ 489 (1170)
+.+-+..+|..-..+.|+.|.+++||+.. .+++|++|+|++|.|..+ |..++.++.|-.|-+.++..++.+|. |.
T Consensus 58 L~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 58 LTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred cccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 44556677888888999999999999876 899999999999999887 67788888888887777666777774 88
Q ss_pred CCCCccEEEeeccCCcccccccccCCCCccEEEeeCCCCCCccCcccc--CCcccEEEecCCCC------------CCcc
Q 045458 490 GVPNLEKLYLEGCTRLREIHPSLLLHSKLVILNLTGCTSLATLPGKIF--MKSVKKLVLSGCSK------------LKKF 555 (1170)
Q Consensus 490 ~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~--l~~L~~L~L~~~~~------------~~~l 555 (1170)
++..|+.|.+.-|...-.....+..+++|..|.+.+ +.+..++.... +.+++.+.+..|.. ....
T Consensus 138 gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~ 216 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN 216 (498)
T ss_pred hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhc
Confidence 888888888877654444456677888888888887 44555555333 77888888776652 1222
Q ss_pred ccccCCCCCCcEEEecCccCCccCcch--hcCCCCCEEeccCCCCCCcCc-cccCCCCcccEEEeeCCCCCCCcchhhcC
Q 045458 556 PKIVGNMECLSKLLLDGTAIGELPLSI--ELLSKLVSLDLNNCKNFKNLP-VTISSLKCLRSLVLSGCSKLKKFPEIVES 632 (1170)
Q Consensus 556 ~~~l~~l~~L~~L~L~~~~i~~l~~~i--~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~~~~~~p~~~~~ 632 (1170)
|..++......-..+.+.++..++..- ..+..+..--.+.|......| ..+..+++|+.|+|++|.....-+.+++.
T Consensus 217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~ 296 (498)
T KOG4237|consen 217 PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG 296 (498)
T ss_pred hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcc
Confidence 333344333333344444444333211 111122111122232333333 25788999999999999988888899999
Q ss_pred CcccCeEeccCcCCCccCcc-ccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCC
Q 045458 633 MEDLSELFLDGTSITEVPSS-IELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFK 693 (1170)
Q Consensus 633 l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~ 693 (1170)
...+++|.|..|++..+.+. +..+.+|+.|+|.+|+.....|..|..+.+|.+|.+-+|+.
T Consensus 297 ~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 297 AAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 99999999999999877543 67889999999999999888898899999999999987654
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.57 E-value=9.6e-15 Score=179.34 Aligned_cols=245 Identities=22% Similarity=0.345 Sum_probs=122.4
Q ss_pred CCccEEEeeCCCCCCccCccccCCcccEEEecCCCCCCccccccCCCCCCcEEEecCccCCccCcchhcCCCCCEEeccC
Q 045458 516 SKLVILNLTGCTSLATLPGKIFMKSVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTAIGELPLSIELLSKLVSLDLNN 595 (1170)
Q Consensus 516 ~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~ 595 (1170)
.+...|+++++ .++.+|..+ .++|+.|++++|. +..+|..+. .+|++|++++|.+..+|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~-~LtsLP~~I-p~~L~~L~Ls~N~-LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKIL-GLTTIPACI-PEQITTLILDNNE-LKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCC-CcCcCCccc-ccCCcEEEecCCC-CCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcC
Confidence 34566777763 455666543 3566667776663 334554332 356666666666666665432 3455555555
Q ss_pred CCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccc
Q 045458 596 CKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPD 675 (1170)
Q Consensus 596 ~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~ 675 (1170)
|... .+|..+. .+|+.|+++ +|.+..+|..+. ++|+.|++++|. +..+|.
T Consensus 251 N~L~-~LP~~l~--s~L~~L~Ls------------------------~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~ 300 (754)
T PRK15370 251 NRIT-ELPERLP--SALQSLDLF------------------------HNKISCLPENLP--EELRYLSVYDNS-IRTLPA 300 (754)
T ss_pred CccC-cCChhHh--CCCCEEECc------------------------CCccCccccccC--CCCcEEECCCCc-cccCcc
Confidence 5422 3443322 244444444 444444443322 244445544442 223332
Q ss_pred cCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCCCccccCCCCCcEEEecCCCCCCCCCCcccCccccc
Q 045458 676 SINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQPPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNL 755 (1170)
Q Consensus 676 ~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~ 755 (1170)
.+. ++|+.|++++|.. ..+|..+. ++|+.|++++|.++.+|..+. ++|+.|++++|....
T Consensus 301 ~lp--~sL~~L~Ls~N~L-t~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~------------- 360 (754)
T PRK15370 301 HLP--SGITHLNVQSNSL-TALPETLP--PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITV------------- 360 (754)
T ss_pred cch--hhHHHHHhcCCcc-ccCCcccc--ccceeccccCCccccCChhhc--CcccEEECCCCCCCc-------------
Confidence 221 2455555555432 23333221 455666666666655554442 456666666654321
Q ss_pred ccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCcccchhhh----cCCCCCEeecc
Q 045458 756 IKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVSLPASIS----RLSKLECLNLN 831 (1170)
Q Consensus 756 ~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~lp~~i~----~l~~L~~L~L~ 831 (1170)
+|..+ .++|+.|+|++|++.. +|..+. .+|+.|++++|++..+|.++. .++++..|+|.
T Consensus 361 -----------LP~~l--p~~L~~LdLs~N~Lt~--LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~ 423 (754)
T PRK15370 361 -----------LPETL--PPTITTLDVSRNALTN--LPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVE 423 (754)
T ss_pred -----------CChhh--cCCcCEEECCCCcCCC--CCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEee
Confidence 11111 1356666666666642 444332 356666666666666554432 33566666666
Q ss_pred Ccc
Q 045458 832 GCK 834 (1170)
Q Consensus 832 ~c~ 834 (1170)
+++
T Consensus 424 ~Np 426 (754)
T PRK15370 424 YNP 426 (754)
T ss_pred CCC
Confidence 655
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.57 E-value=6.1e-15 Score=181.05 Aligned_cols=243 Identities=19% Similarity=0.261 Sum_probs=123.9
Q ss_pred ccEEeecCcccCCchhcccCCceEEEcCCCCCCCCCCCCCCCceeEEEccCCChHHHhhcCCCCCCCcEEEcCCCCCCCc
Q 045458 405 LRLLGICNLKLPEGLECLSNKLRLLDWPGYPLKSLPPNLQLDKTIEFKMLCSRIEELWKGIKSLNMLKVMKVSYSQSLIK 484 (1170)
Q Consensus 405 Lr~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~s~i~~L~~~l~~l~~L~~L~Ls~~~~l~~ 484 (1170)
...|.+.++.+..-+..+|..|+.|++++|.++++|..+. .+|++|++++|+++.+|..+. .+|+.|+|++|... .
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~-~ 255 (754)
T PRK15370 180 KTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRIT-E 255 (754)
T ss_pred ceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--ccccEEECcCCccC-c
Confidence 4556666665554444556677777777777777776553 467777777777776665443 35667777666532 3
Q ss_pred CCC-CCCCCCccEEEeeccCCcccccccccCCCCccEEEeeCCCCCCccCccccCCcccEEEecCCCCCCccccccCCCC
Q 045458 485 IPD-FTGVPNLEKLYLEGCTRLREIHPSLLLHSKLVILNLTGCTSLATLPGKIFMKSVKKLVLSGCSKLKKFPKIVGNME 563 (1170)
Q Consensus 485 ~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~ 563 (1170)
+|. + ..+|+.|++++| .+..+|..+. ++|+.|++++| .++.+|..+ .++|+.|++++|... .+|..+. +
T Consensus 256 LP~~l--~s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~l-p~sL~~L~Ls~N~Lt-~LP~~l~--~ 325 (754)
T PRK15370 256 LPERL--PSALQSLDLFHN-KISCLPENLP--EELRYLSVYDN-SIRTLPAHL-PSGITHLNVQSNSLT-ALPETLP--P 325 (754)
T ss_pred CChhH--hCCCCEEECcCC-ccCccccccC--CCCcEEECCCC-ccccCcccc-hhhHHHHHhcCCccc-cCCcccc--c
Confidence 443 2 135666666654 3444554432 35566666554 333444322 234555555554322 2332221 3
Q ss_pred CCcEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccC
Q 045458 564 CLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDG 643 (1170)
Q Consensus 564 ~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~ 643 (1170)
+|+.|.+++|.+..+|..+. ++ |+.|++++|.. ..+|..+ .++|+.|++++
T Consensus 326 sL~~L~Ls~N~Lt~LP~~l~--~s------------------------L~~L~Ls~N~L-~~LP~~l--p~~L~~LdLs~ 376 (754)
T PRK15370 326 GLKTLEAGENALTSLPASLP--PE------------------------LQVLDVSKNQI-TVLPETL--PPTITTLDVSR 376 (754)
T ss_pred cceeccccCCccccCChhhc--Cc------------------------ccEEECCCCCC-CcCChhh--cCCcCEEECCC
Confidence 44555555555444444332 34 44455544432 2233322 13455555555
Q ss_pred cCCCccCccccCCCCCCEEeccCCcCCcccccc----CCCCCCCCEEEeeCcCC
Q 045458 644 TSITEVPSSIELLTGLNVLNLNDCKNLVRIPDS----INGLKSLQSLNLSGCFK 693 (1170)
Q Consensus 644 ~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~----l~~l~~L~~L~L~~c~~ 693 (1170)
|.+..+|..+. ..|+.|++++|+.. .+|.. ...++++..|++.+|+.
T Consensus 377 N~Lt~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 377 NALTNLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred CcCCCCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCc
Confidence 55555554432 24555555554432 33332 23345666677766654
No 20
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.48 E-value=2.5e-12 Score=168.69 Aligned_cols=299 Identities=14% Similarity=0.168 Sum_probs=188.0
Q ss_pred cCCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHH
Q 045458 22 TEPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISL 101 (1170)
Q Consensus 22 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 101 (1170)
.+|..+..+|-|+.-++.|... ...+++.|+|++|.||||++..+..+. +.++|+. +.... ......
T Consensus 8 ~~p~~~~~~~~R~rl~~~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~-l~~~d---~~~~~f 74 (903)
T PRK04841 8 SRPVRLHNTVVRERLLAKLSGA-----NNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYS-LDESD---NQPERF 74 (903)
T ss_pred CCCCCccccCcchHHHHHHhcc-----cCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEe-cCccc---CCHHHH
Confidence 4677788999998776666432 456899999999999999999988532 3577885 33222 222344
Q ss_pred HHHHHHHHhhcCCC------------ccccchhhHHHHHHhhC--CCeEEEEEeCCCCHH------HHHHhhcCcCCCCC
Q 045458 102 QKQLLSNLLKLGDI------------SIWHVEDGINIIGSRLR--QKKVLLIIDDVADVE------QLQSLAGKRDWFGP 161 (1170)
Q Consensus 102 ~~~ll~~l~~~~~~------------~~~~~~~~~~~i~~~L~--~k~~LlVLDdv~~~~------~l~~l~~~~~~~~~ 161 (1170)
...++..+...... ...+.......+...+. +++++|||||+...+ .+..+.. ...+
T Consensus 75 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~---~~~~ 151 (903)
T PRK04841 75 ASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLR---HQPE 151 (903)
T ss_pred HHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHH---hCCC
Confidence 45555554311110 00111122222333333 689999999996542 2333333 3357
Q ss_pred CcEEEEEeCCchhhhhhCC-CCccEEECC----CCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHHH
Q 045458 162 GSRILITTRDKQLLVAHEV-DEEHILNLD----VLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVLG 236 (1170)
Q Consensus 162 gsrIIiTTR~~~v~~~~~~-~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~ 236 (1170)
+.++|||||...-...... ......++. +|+.+|+.+||....... -..+.+.++++.++|+|+++..++
T Consensus 152 ~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-----~~~~~~~~l~~~t~Gwp~~l~l~~ 226 (903)
T PRK04841 152 NLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP-----IEAAESSRLCDDVEGWATALQLIA 226 (903)
T ss_pred CeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC-----CCHHHHHHHHHHhCChHHHHHHHH
Confidence 7889999998532111110 011245566 999999999998654221 223557889999999999999998
Q ss_pred HhhcCCCHHHHHHHHHHhhcCCCchHHHHH-HhhccCCChhhhhHhhhhcccccccCHHHHHHHHhhCCCCccchhhhhh
Q 045458 237 SFLIGRTADLWRSALERLKRDPSYKIMSIL-QISFDGLQGSEKKIFLDVACFFKRWDRDYVAEILEGCGFSPVIGLEVLI 315 (1170)
Q Consensus 237 ~~L~~~~~~~w~~~l~~l~~~~~~~i~~~l-~~sy~~L~~~~k~~fl~~a~f~~~~~~~~l~~~~~~~g~~~~~~l~~L~ 315 (1170)
..+..... ........+...+...+...+ ...++.||++.++.++..|+++ .++.+.+..+.... .....++.|.
T Consensus 227 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~~--~~~~~L~~l~ 302 (903)
T PRK04841 227 LSARQNNS-SLHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGEE--NGQMRLEELE 302 (903)
T ss_pred HHHhhCCC-chhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCCC--cHHHHHHHHH
Confidence 77754321 011112223222233455544 3348999999999999999986 67766666555321 2345689999
Q ss_pred cccceee-eC--CCceechHHHHHHHHHHHhcc
Q 045458 316 ERSLLTV-DE--DNTLGMHDLLQELGQLIVARQ 345 (1170)
Q Consensus 316 ~~sLi~~-~~--~~~~~mH~li~~~~~~i~~~~ 345 (1170)
+.+++.. .. ..+|.+|++++++.+.....+
T Consensus 303 ~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 303 RQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred HCCCeeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 9999654 22 236899999999999887544
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.42 E-value=6.2e-15 Score=157.47 Aligned_cols=146 Identities=23% Similarity=0.298 Sum_probs=99.2
Q ss_pred EEEcCCCCCCCCCCCCCCCceeEEEccCCChHHHhh-cCCCCCCCcEEEcCCCCCCCcCCC-CCCCCCccEEEeeccCCc
Q 045458 428 LLDWPGYPLKSLPPNLQLDKTIEFKMLCSRIEELWK-GIKSLNMLKVMKVSYSQSLIKIPD-FTGVPNLEKLYLEGCTRL 505 (1170)
Q Consensus 428 ~L~l~~~~l~~lp~~~~l~~L~~L~L~~s~i~~L~~-~l~~l~~L~~L~Ls~~~~l~~~~~-~~~l~~L~~L~L~~~~~l 505 (1170)
..+.++-.++.+|.++ +..-+++.|..|.|+.+|. .++.+++||.||||+|.+...-|+ |.+++.|-.|-+.++..+
T Consensus 50 ~VdCr~~GL~eVP~~L-P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANL-PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred eEEccCCCcccCcccC-CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 4567777888898886 5677899999999999984 578899999999999886555554 777777777776665555
Q ss_pred cccccc-ccCCCCccEEEeeCCCCCCccCccccCCcccEEEecCCCCCCccccccCCCCCCcEEEecCccCCccCc-chh
Q 045458 506 REIHPS-LLLHSKLVILNLTGCTSLATLPGKIFMKSVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTAIGELPL-SIE 583 (1170)
Q Consensus 506 ~~~~~~-i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~-~i~ 583 (1170)
..+|.. ++.|..|+ .|.+.-|...-...+.+..+++|..|.+..|.+..++. ++.
T Consensus 129 ~~l~k~~F~gL~slq-----------------------rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~ 185 (498)
T KOG4237|consen 129 TDLPKGAFGGLSSLQ-----------------------RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQ 185 (498)
T ss_pred hhhhhhHhhhHHHHH-----------------------HHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhcccccc
Confidence 555543 33444444 44444444334444556666667777777777766665 566
Q ss_pred cCCCCCEEeccCCC
Q 045458 584 LLSKLVSLDLNNCK 597 (1170)
Q Consensus 584 ~l~~L~~L~L~~~~ 597 (1170)
.+..++.+.+..|.
T Consensus 186 ~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 186 GLAAIKTLHLAQNP 199 (498)
T ss_pred chhccchHhhhcCc
Confidence 66666666666554
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.38 E-value=3.1e-14 Score=162.86 Aligned_cols=210 Identities=21% Similarity=0.189 Sum_probs=95.2
Q ss_pred cCCCCcccEEEeeCCCCCCCcchhhcCCcc---cCeEeccCcCCCc-----cCccccCC-CCCCEEeccCCcCCc----c
Q 045458 606 ISSLKCLRSLVLSGCSKLKKFPEIVESMED---LSELFLDGTSITE-----VPSSIELL-TGLNVLNLNDCKNLV----R 672 (1170)
Q Consensus 606 l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~---L~~L~l~~~~l~~-----lp~~i~~l-~~L~~L~L~~~~~l~----~ 672 (1170)
+..+++|+.|++++|......+..+..+.+ |+.|++++|.+.. +...+..+ ++|+.|++++|.... .
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 334444555555444443333333322222 5555555444431 12223334 555555555554331 1
Q ss_pred ccccCCCCCCCCEEEeeCcCCCC----CCccccCCCCCCcEEEccCccCCC-----CCccccCCCCCcEEEecCCCCCCC
Q 045458 673 IPDSINGLKSLQSLNLSGCFKLE----NVPETLGQVESLEELHISGTAIRQ-----PPSGIFHMKNLKALYFRGCKGSPS 743 (1170)
Q Consensus 673 lp~~l~~l~~L~~L~L~~c~~l~----~l~~~l~~l~~L~~L~L~~~~i~~-----lp~~l~~l~~L~~L~L~~c~~~~~ 743 (1170)
++..+..+++|++|++++|.... .++..+..+++|+.|++++|.+.. +...+..+++|++|++++|.....
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~ 236 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA 236 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence 22333444556666665554331 122233344566666666655542 223344456666666666542210
Q ss_pred CCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCC---CCcCccCCCCCCCEEECcCCCCccc-----
Q 045458 744 STSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEG---FIPNDIGNLRSLKVLCLSNNSFVSL----- 815 (1170)
Q Consensus 744 ~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~---~~~~~l~~l~sL~~L~Ls~n~l~~l----- 815 (1170)
. .. .+...++ ...+.|+.|++++|.+++. .+...+..+++|+.|++++|.+..-
T Consensus 237 ~--~~-------------~l~~~~~---~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~ 298 (319)
T cd00116 237 G--AA-------------ALASALL---SPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLL 298 (319)
T ss_pred H--HH-------------HHHHHHh---ccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHH
Confidence 0 00 0000000 1234577777777766421 1223344556677777777766632
Q ss_pred chhhhcC-CCCCEeeccCc
Q 045458 816 PASISRL-SKLECLNLNGC 833 (1170)
Q Consensus 816 p~~i~~l-~~L~~L~L~~c 833 (1170)
...+... +.|+.|++.++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 299 AESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHHhhcCCchhhcccCCC
Confidence 2233344 56666666654
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.37 E-value=1.4e-14 Score=137.20 Aligned_cols=160 Identities=30% Similarity=0.436 Sum_probs=127.3
Q ss_pred CCccCccccCCcccEEEecCCCCCCccccccCCCCCCcEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCC
Q 045458 529 LATLPGKIFMKSVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISS 608 (1170)
Q Consensus 529 l~~lp~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~ 608 (1170)
...+|..+.+.+.+.|.|++| .+..+|..+.++.+|+.|++.+|.++++|.++..+++|+.|++.-|. +..+|..++.
T Consensus 23 f~~~~gLf~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs 100 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGS 100 (264)
T ss_pred HhhcccccchhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCC
Confidence 344555666788888888886 46677888999999999999999999999999999999999998654 6678999999
Q ss_pred CCcccEEEeeCCCCCC-CcchhhcCCcccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEE
Q 045458 609 LKCLRSLVLSGCSKLK-KFPEIVESMEDLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLN 687 (1170)
Q Consensus 609 l~~L~~L~L~~~~~~~-~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ 687 (1170)
++.|+.|+|..|+..+ .+|..+-.+..|+.|++++|.++-+|..++.+++|+.|.+++|..+ .+|..++.+..|+.|+
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELH 179 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHh
Confidence 9999999999876654 6788888889999999999999999988888888888888876533 3455555555555555
Q ss_pred eeCc
Q 045458 688 LSGC 691 (1170)
Q Consensus 688 L~~c 691 (1170)
+.||
T Consensus 180 iqgn 183 (264)
T KOG0617|consen 180 IQGN 183 (264)
T ss_pred cccc
Confidence 5544
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.29 E-value=6.1e-14 Score=132.88 Aligned_cols=82 Identities=32% Similarity=0.583 Sum_probs=63.7
Q ss_pred CCCCCCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCcccchhhhcCCCCCEeeccCccCCCcCCCCCccc
Q 045458 767 FPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVSLPASISRLSKLECLNLNGCKKLQSLPPLPARM 846 (1170)
Q Consensus 767 lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~sL 846 (1170)
+|..|..+..|+.|.|++|.+ +.+|..++.+++|+.|.+.+|.+.++|..++.+++|++|.+.+++ |+- +||.|
T Consensus 119 lpgnff~m~tlralyl~dndf--e~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr-l~v---lppel 192 (264)
T KOG0617|consen 119 LPGNFFYMTTLRALYLGDNDF--EILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR-LTV---LPPEL 192 (264)
T ss_pred CCcchhHHHHHHHHHhcCCCc--ccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce-eee---cChhh
Confidence 444455666777788888877 458888999999999999999999999999999999999999854 444 45556
Q ss_pred ceeeccCC
Q 045458 847 RIASVNGC 854 (1170)
Q Consensus 847 ~~L~i~~C 854 (1170)
-.|++.+-
T Consensus 193 ~~l~l~~~ 200 (264)
T KOG0617|consen 193 ANLDLVGN 200 (264)
T ss_pred hhhhhhhh
Confidence 55555543
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.28 E-value=7.5e-13 Score=151.44 Aligned_cols=254 Identities=19% Similarity=0.164 Sum_probs=121.2
Q ss_pred CCCceeEEEccCCCh-----HHHhhcCCCCCCCcEEEcCCCCCCC--c----C-CCCCCCCCccEEEeeccCCccccccc
Q 045458 444 QLDKTIEFKMLCSRI-----EELWKGIKSLNMLKVMKVSYSQSLI--K----I-PDFTGVPNLEKLYLEGCTRLREIHPS 511 (1170)
Q Consensus 444 ~l~~L~~L~L~~s~i-----~~L~~~l~~l~~L~~L~Ls~~~~l~--~----~-~~~~~l~~L~~L~L~~~~~l~~~~~~ 511 (1170)
.+.+|++|+++++.+ ..++..+...+.|+.++++++.... . + ..+..+++|++|++++|......+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 344466666666665 3456667777778888877765331 0 0 12445666777777666543333333
Q ss_pred ccCCCC---ccEEEeeCCCCCCc----cCcccc-C-CcccEEEecCCCCCC----ccccccCCCCCCcEEEecCccCCcc
Q 045458 512 LLLHSK---LVILNLTGCTSLAT----LPGKIF-M-KSVKKLVLSGCSKLK----KFPKIVGNMECLSKLLLDGTAIGEL 578 (1170)
Q Consensus 512 i~~l~~---L~~L~L~~c~~l~~----lp~~~~-l-~~L~~L~L~~~~~~~----~l~~~l~~l~~L~~L~L~~~~i~~l 578 (1170)
+..+.+ |+.|++++|..... +...+. + ++|+.|++++|.... .++..+..+.+|++|+++++.+..-
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 180 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA 180 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence 333333 66666666543211 111111 2 455555555554331 1222333444455555554444310
Q ss_pred CcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCC----CcchhhcCCcccCeEeccCcCCCcc-Cccc
Q 045458 579 PLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLK----KFPEIVESMEDLSELFLDGTSITEV-PSSI 653 (1170)
Q Consensus 579 ~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~----~~p~~~~~l~~L~~L~l~~~~l~~l-p~~i 653 (1170)
. ...++..+..+++|+.|++++|.... .++..+..+++|+.|++++|.+... ...+
T Consensus 181 ~-------------------~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 181 G-------------------IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred H-------------------HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 0 00112222333444444444443321 1223334445555555555554421 0111
Q ss_pred -c----CCCCCCEEeccCCcCC----ccccccCCCCCCCCEEEeeCcCCCCC----CccccCCC-CCCcEEEccCcc
Q 045458 654 -E----LLTGLNVLNLNDCKNL----VRIPDSINGLKSLQSLNLSGCFKLEN----VPETLGQV-ESLEELHISGTA 716 (1170)
Q Consensus 654 -~----~l~~L~~L~L~~~~~l----~~lp~~l~~l~~L~~L~L~~c~~l~~----l~~~l~~l-~~L~~L~L~~~~ 716 (1170)
. ..+.|+.|++.+|... ..+...+..+++|+.+++++|..... +...+... +.|++|++.+++
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 1 1356666666666543 12233344456777777777655432 33333333 567777776654
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.27 E-value=4.3e-12 Score=158.55 Aligned_cols=160 Identities=28% Similarity=0.384 Sum_probs=118.6
Q ss_pred CcCCCCCCCCCccEEEeeccCCcccccccccCCCCccEEEeeCCCC-CCccCcccc--CCcccEEEecCCCCCCcccccc
Q 045458 483 IKIPDFTGVPNLEKLYLEGCTRLREIHPSLLLHSKLVILNLTGCTS-LATLPGKIF--MKSVKKLVLSGCSKLKKFPKIV 559 (1170)
Q Consensus 483 ~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~-l~~lp~~~~--l~~L~~L~L~~~~~~~~l~~~l 559 (1170)
...|........+...+.++. ...++.+. ..++|++|-+.++.. +..++..++ ++.|+.|+|++|.....+|+.+
T Consensus 514 ~~~~~~~~~~~~rr~s~~~~~-~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I 591 (889)
T KOG4658|consen 514 SEIPQVKSWNSVRRMSLMNNK-IEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI 591 (889)
T ss_pred cccccccchhheeEEEEeccc-hhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH
Confidence 345555555667777766643 22333222 234788888887663 666666433 9999999999999999999999
Q ss_pred CCCCCCcEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCC--CCCCcchhhcCCcccC
Q 045458 560 GNMECLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCS--KLKKFPEIVESMEDLS 637 (1170)
Q Consensus 560 ~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~--~~~~~p~~~~~l~~L~ 637 (1170)
+++-+|++|+++++.+.++|..+.+|.+|.+|++..+..+..+|.....+++|++|.+.... ........+..+++|+
T Consensus 592 ~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~ 671 (889)
T KOG4658|consen 592 GELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE 671 (889)
T ss_pred hhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchh
Confidence 99999999999999999999999999999999999998888888777779999999998754 1122333345555555
Q ss_pred eEeccCc
Q 045458 638 ELFLDGT 644 (1170)
Q Consensus 638 ~L~l~~~ 644 (1170)
.+.....
T Consensus 672 ~ls~~~~ 678 (889)
T KOG4658|consen 672 NLSITIS 678 (889)
T ss_pred hheeecc
Confidence 5555433
No 27
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.19 E-value=9.3e-10 Score=129.56 Aligned_cols=254 Identities=15% Similarity=0.156 Sum_probs=151.6
Q ss_pred cCCCccCccccchhhHHHHHHHHcCC--CCCeEEEEEEeCCCccHHHHHHHHHhhhccccCc--eeEEEecchhhccCCc
Q 045458 22 TEPETIKELVGIESRLEKIRFLMGTG--SSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDG--SSFLADVREKSEKEGS 97 (1170)
Q Consensus 22 ~~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~ 97 (1170)
.+...++.++||+.++++|...+... ....+.+.|+|++|+|||++++.+++++...... .+++. .... ..
T Consensus 24 ~~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in-~~~~----~~ 98 (394)
T PRK00411 24 EPDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN-CQID----RT 98 (394)
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE-CCcC----CC
Confidence 44556788999999999999888442 2344668899999999999999999987655421 22332 2222 12
Q ss_pred HHHHHHHHHHHHhhcCCC-ccccchhhHHHHHHhhC--CCeEEEEEeCCCCHH------HHHHhhcCcCCCC-CCcEEEE
Q 045458 98 VISLQKQLLSNLLKLGDI-SIWHVEDGINIIGSRLR--QKKVLLIIDDVADVE------QLQSLAGKRDWFG-PGSRILI 167 (1170)
Q Consensus 98 ~~~l~~~ll~~l~~~~~~-~~~~~~~~~~~i~~~L~--~k~~LlVLDdv~~~~------~l~~l~~~~~~~~-~gsrIIi 167 (1170)
...+...++.++...... ...+..+....+.+.+. +++++||||+++... .+..+........ ....+|.
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~ 178 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIG 178 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEE
Confidence 256677777777532111 11234455566666665 457899999998753 3445443222111 1233677
Q ss_pred EeCCchhhhhhC-----CCCccEEECCCCChHHHHHHHHHhhcCC---CC-CChhhHHHHHHHHHHhCCCchHHHHHHHh
Q 045458 168 TTRDKQLLVAHE-----VDEEHILNLDVLNNDEALQLFSMKAFKT---HQ-PVGEYVELSERVLEYAGGLPLALKVLGSF 238 (1170)
Q Consensus 168 TTR~~~v~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~---~~-~~~~~~~~~~~i~~~~~GlPLal~~l~~~ 238 (1170)
++++..+..... .-....+.+++++.++..+++..++-.. .. +.+..+.+++......|..+.|+.++-.+
T Consensus 179 i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a 258 (394)
T PRK00411 179 ISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRA 258 (394)
T ss_pred EECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 776654322210 1112368999999999999998876321 11 12222222333323345567777765432
Q ss_pred h--c---CC---CHHHHHHHHHHhhcCCCchHHHHHHhhccCCChhhhhHhhhhccc
Q 045458 239 L--I---GR---TADLWRSALERLKRDPSYKIMSILQISFDGLQGSEKKIFLDVACF 287 (1170)
Q Consensus 239 L--~---~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f 287 (1170)
. . +. +.+.+..++++.. .....-.+..|+..+|..+..++..
T Consensus 259 ~~~a~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~ 308 (394)
T PRK00411 259 GLIAEREGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRL 308 (394)
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 2 1 11 4566666666552 2334556789999998888776643
No 28
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.16 E-value=5e-10 Score=140.94 Aligned_cols=312 Identities=17% Similarity=0.218 Sum_probs=184.6
Q ss_pred ccccchhhHHHHHHHHcCCC-CCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCC---cHHHHHHH
Q 045458 29 ELVGIESRLEKIRFLMGTGS-SDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEG---SVISLQKQ 104 (1170)
Q Consensus 29 ~~vGr~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~---~~~~l~~~ 104 (1170)
.++||+.+++.|...+.... +...|+.+.|.+|||||+|+++|...+.+++ ..|+..--....... .+....+.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~--~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQR--GYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccc--eeeeHhhcccccCCCchHHHHHHHHH
Confidence 37999999999998887543 4568999999999999999999998776551 111111000000000 01112222
Q ss_pred HHHHH-------------------hhcCCCcc----------c---------cc--hhh-----HHHHHHhh-CCCeEEE
Q 045458 105 LLSNL-------------------LKLGDISI----------W---------HV--EDG-----INIIGSRL-RQKKVLL 138 (1170)
Q Consensus 105 ll~~l-------------------~~~~~~~~----------~---------~~--~~~-----~~~i~~~L-~~k~~Ll 138 (1170)
+..++ +....... + .. +.. ...+.... +.+++++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 22222 11000000 0 00 000 11122222 3469999
Q ss_pred EEeCCCCHH-----HHHHhhcCcC--CC-CCCcEEEEEeCCchhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCC
Q 045458 139 IIDDVADVE-----QLQSLAGKRD--WF-GPGSRILITTRDKQLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQP 210 (1170)
Q Consensus 139 VLDdv~~~~-----~l~~l~~~~~--~~-~~gsrIIiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 210 (1170)
|+||+.-.+ -++.+..... .+ ....-.+.|.+...-...........+.+.+|+..+..++..........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~- 237 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL- 237 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc-
Confidence 999994222 2333333221 00 01222333334332111222233348999999999999999877643222
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHHHhhcCC-------CHHHHHHHHHHhhcCCC-chHHHHHHhhccCCChhhhhHhh
Q 045458 211 VGEYVELSERVLEYAGGLPLALKVLGSFLIGR-------TADLWRSALERLKRDPS-YKIMSILQISFDGLQGSEKKIFL 282 (1170)
Q Consensus 211 ~~~~~~~~~~i~~~~~GlPLal~~l~~~L~~~-------~~~~w~~~l~~l~~~~~-~~i~~~l~~sy~~L~~~~k~~fl 282 (1170)
...+..+.|++++.|+|+.+..+-..++.+ ....|..-...+...+. ..+...+....+.||+..|+++.
T Consensus 238 --~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~ 315 (849)
T COG3899 238 --LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLK 315 (849)
T ss_pred --ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 334678899999999999999999998764 23445555444443221 22455688899999999999999
Q ss_pred hhcccccccCHHHHHHHHhhCCCCccchhhhhhcccceeeeC--------CC---ceechHHHHHHHHHHHhcc
Q 045458 283 DVACFFKRWDRDYVAEILEGCGFSPVIGLEVLIERSLLTVDE--------DN---TLGMHDLLQELGQLIVARQ 345 (1170)
Q Consensus 283 ~~a~f~~~~~~~~l~~~~~~~g~~~~~~l~~L~~~sLi~~~~--------~~---~~~mH~li~~~~~~i~~~~ 345 (1170)
..||+.+.|+.+.+..++.........++......++|.+.. .. +-..|+.+|+.+.....+.
T Consensus 316 ~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~~ 389 (849)
T COG3899 316 AAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPES 389 (849)
T ss_pred HHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCchh
Confidence 999999999999999988754443333444444445555421 11 2267999998887665543
No 29
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.16 E-value=5.3e-10 Score=126.64 Aligned_cols=275 Identities=18% Similarity=0.136 Sum_probs=153.1
Q ss_pred CccccchhhHHHHHHHHcCC---CCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHH
Q 045458 28 KELVGIESRLEKIRFLMGTG---SSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQ 104 (1170)
Q Consensus 28 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (1170)
.+|||++..+++|..++... ....+.+.++|++|+|||+||+.+++.+...+. ....... ... .. ...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~----~~~~~~~-~~~---~~-l~~ 74 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK----ITSGPAL-EKP---GD-LAA 74 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE----Eeccchh-cCc---hh-HHH
Confidence 57999999999998888531 133456889999999999999999987754321 1110000 000 11 111
Q ss_pred HHHHHhhcCCCcccc----chhhHHHHHHhhCCCeEEEEEeCCCCHHHHHHhhcCcCCCCCCcEEEEEeCCchhhhhhCC
Q 045458 105 LLSNLLKLGDISIWH----VEDGINIIGSRLRQKKVLLIIDDVADVEQLQSLAGKRDWFGPGSRILITTRDKQLLVAHEV 180 (1170)
Q Consensus 105 ll~~l~~~~~~~~~~----~~~~~~~i~~~L~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~ 180 (1170)
.+..+....-.-+++ ..+..+.+...+.+.+..+|+|+..+..++... ..+.+-|..||+...+......
T Consensus 75 ~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 75 ILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLD------LPPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeec------CCCeEEEEecCCccccCHHHHh
Confidence 111111000000000 011122233333444444555544333333211 1234556667776544332111
Q ss_pred CCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHHHHhhcCCCHHHHHHHHHHhhc--CC
Q 045458 181 DEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVLGSFLIGRTADLWRSALERLKR--DP 258 (1170)
Q Consensus 181 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L~~~~~~~w~~~l~~l~~--~~ 258 (1170)
.-...+++++++.+|..+++...+..... .-..+.+..|++.++|.|-.+..++..+ |..+.. ... ..
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~--~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~~-~~~~~it 218 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNV--EIEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQV-RGQKIIN 218 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHHH-cCCCCcC
Confidence 11237899999999999999988753322 2334667889999999997665554432 211100 000 00
Q ss_pred C---chHHHHHHhhccCCChhhhhHhh-hhccccc-ccCHHHHHHHHhhCCCCccchhh-hhhcccceeeeCCCc
Q 045458 259 S---YKIMSILQISFDGLQGSEKKIFL-DVACFFK-RWDRDYVAEILEGCGFSPVIGLE-VLIERSLLTVDEDNT 327 (1170)
Q Consensus 259 ~---~~i~~~l~~sy~~L~~~~k~~fl-~~a~f~~-~~~~~~l~~~~~~~g~~~~~~l~-~L~~~sLi~~~~~~~ 327 (1170)
. ......+...|.++++.++..+. .++.+.. ++..+.++..+..........++ .|++++||.....++
T Consensus 219 ~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~~~g~ 293 (305)
T TIGR00635 219 RDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRTPRGR 293 (305)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccCCchh
Confidence 0 11222356678889998887776 4455543 36777888877666555556678 699999998654444
No 30
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.14 E-value=2.4e-09 Score=126.73 Aligned_cols=301 Identities=18% Similarity=0.225 Sum_probs=188.6
Q ss_pred cCCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHH
Q 045458 22 TEPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISL 101 (1170)
Q Consensus 22 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 101 (1170)
.+|..+...|-|..-++.|.+. .+.|.+.|..++|.|||||+.++..... .-..+.|+. + .+........
T Consensus 13 ~~P~~~~~~v~R~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~~~~-~~~~v~Wls-l---de~dndp~rF 82 (894)
T COG2909 13 VRPVRPDNYVVRPRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRELAA-DGAAVAWLS-L---DESDNDPARF 82 (894)
T ss_pred CCCCCcccccccHHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHHhcC-cccceeEee-c---CCccCCHHHH
Confidence 5666788899998766665543 4679999999999999999999988433 335688887 2 3333334666
Q ss_pred HHHHHHHHhhcCCCc------------cccchhhHHHHHHhhC--CCeEEEEEeCCCCH---H---HHHHhhcCcCCCCC
Q 045458 102 QKQLLSNLLKLGDIS------------IWHVEDGINIIGSRLR--QKKVLLIIDDVADV---E---QLQSLAGKRDWFGP 161 (1170)
Q Consensus 102 ~~~ll~~l~~~~~~~------------~~~~~~~~~~i~~~L~--~k~~LlVLDdv~~~---~---~l~~l~~~~~~~~~ 161 (1170)
...++..+....... ..+.......+...+. .++..+||||..-. . .++.+... ..+
T Consensus 83 ~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~---~P~ 159 (894)
T COG2909 83 LSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH---APE 159 (894)
T ss_pred HHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh---CCC
Confidence 677777665321111 1112222333333333 47899999997432 2 24444443 358
Q ss_pred CcEEEEEeCCchhhhhhCC-CCccEEECC----CCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHHH
Q 045458 162 GSRILITTRDKQLLVAHEV-DEEHILNLD----VLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVLG 236 (1170)
Q Consensus 162 gsrIIiTTR~~~v~~~~~~-~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~ 236 (1170)
+-.+|+|||.+.-...... -....+++. .|+.+|+.++|..... .+-....++.+.++..|-+-|+..++
T Consensus 160 ~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~-----l~Ld~~~~~~L~~~teGW~~al~L~a 234 (894)
T COG2909 160 NLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS-----LPLDAADLKALYDRTEGWAAALQLIA 234 (894)
T ss_pred CeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC-----CCCChHHHHHHHhhcccHHHHHHHHH
Confidence 8999999999863221111 011234444 4899999999986651 22333557899999999999999998
Q ss_pred HhhcCC-CHHHHHHHHHHhhcCCCchHH-HHHHhhccCCChhhhhHhhhhcccccccCHHHHHHHHhhCCCCccchhhhh
Q 045458 237 SFLIGR-TADLWRSALERLKRDPSYKIM-SILQISFDGLQGSEKKIFLDVACFFKRWDRDYVAEILEGCGFSPVIGLEVL 314 (1170)
Q Consensus 237 ~~L~~~-~~~~w~~~l~~l~~~~~~~i~-~~l~~sy~~L~~~~k~~fl~~a~f~~~~~~~~l~~~~~~~g~~~~~~l~~L 314 (1170)
=.+++. +.+.--. .+... ...+. -...--++.||++.|..++-+|++.. +. +.+...+.+.+ ....-++.|
T Consensus 235 La~~~~~~~~q~~~---~LsG~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~-f~-~eL~~~Ltg~~-ng~amLe~L 307 (894)
T COG2909 235 LALRNNTSAEQSLR---GLSGA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR-FN-DELCNALTGEE-NGQAMLEEL 307 (894)
T ss_pred HHccCCCcHHHHhh---hccch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH-hh-HHHHHHHhcCC-cHHHHHHHH
Confidence 887732 3322111 11111 11122 23344578999999999999998843 22 23333332211 112238899
Q ss_pred hcccceee---eCCCceechHHHHHHHHHHHhccCC
Q 045458 315 IERSLLTV---DEDNTLGMHDLLQELGQLIVARQSP 347 (1170)
Q Consensus 315 ~~~sLi~~---~~~~~~~mH~li~~~~~~i~~~~~~ 347 (1170)
..++|+-+ +++++|+.|.++.+|-+.....+.+
T Consensus 308 ~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~ 343 (894)
T COG2909 308 ERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRELA 343 (894)
T ss_pred HhCCCceeeecCCCceeehhHHHHHHHHhhhccccC
Confidence 99998764 2356899999999999888776543
No 31
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.14 E-value=6.1e-10 Score=126.86 Aligned_cols=282 Identities=17% Similarity=0.119 Sum_probs=154.7
Q ss_pred CCCccCccccchhhHHHHHHHHcC---CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHH
Q 045458 23 EPETIKELVGIESRLEKIRFLMGT---GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVI 99 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 99 (1170)
.|...++|||++..++.+..++.. .....+.+.|+|++|+||||+|+.+++.+...+. +.. .. .... .
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~~-~~~~----~ 90 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-GP-ALEK----P 90 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-cc-cccC----h
Confidence 355678899999999999877753 1233567889999999999999999998754321 111 00 0000 1
Q ss_pred HHHHHHHHHHhhcCCCccccc----hhhHHHHHHhhCCCeEEEEEeCCCCHHHHHHhhcCcCCCCCCcEEEEEeCCchhh
Q 045458 100 SLQKQLLSNLLKLGDISIWHV----EDGINIIGSRLRQKKVLLIIDDVADVEQLQSLAGKRDWFGPGSRILITTRDKQLL 175 (1170)
Q Consensus 100 ~l~~~ll~~l~~~~~~~~~~~----~~~~~~i~~~L~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~ 175 (1170)
.....++..+....-.-+++. ....+.+...+.+.+..+|+|+..+..++.. ...+.+-|..|+|...+.
T Consensus 91 ~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~------~l~~~~li~at~~~~~l~ 164 (328)
T PRK00080 91 GDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRL------DLPPFTLIGATTRAGLLT 164 (328)
T ss_pred HHHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceee------cCCCceEEeecCCcccCC
Confidence 111122222110000000000 0011112222223333333333222221111 012334556666655443
Q ss_pred hhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHHHHhhcCCCHHHHHHHHHHhh
Q 045458 176 VAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVLGSFLIGRTADLWRSALERLK 255 (1170)
Q Consensus 176 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L~~~~~~~w~~~l~~l~ 255 (1170)
......-...++++.++.++..+++...+..... ....+.+..|++.|+|.|-.+..+...+ ..|..... -.
T Consensus 165 ~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~ia~~~~G~pR~a~~~l~~~-----~~~a~~~~-~~ 236 (328)
T PRK00080 165 SPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV--EIDEEGALEIARRSRGTPRIANRLLRRV-----RDFAQVKG-DG 236 (328)
T ss_pred HHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHcCCCchHHHHHHHHH-----HHHHHHcC-CC
Confidence 3211111237899999999999999988754332 2344678899999999996554444322 11111100 00
Q ss_pred cCCC---chHHHHHHhhccCCChhhhhHhh-hhcccccc-cCHHHHHHHHhhCCCCccchhh-hhhcccceeeeCCCc
Q 045458 256 RDPS---YKIMSILQISFDGLQGSEKKIFL-DVACFFKR-WDRDYVAEILEGCGFSPVIGLE-VLIERSLLTVDEDNT 327 (1170)
Q Consensus 256 ~~~~---~~i~~~l~~sy~~L~~~~k~~fl-~~a~f~~~-~~~~~l~~~~~~~g~~~~~~l~-~L~~~sLi~~~~~~~ 327 (1170)
.... ....+.+...+.+|++..+..+. .+..|..+ +..+.++..+.......+..++ .|++.+||+....++
T Consensus 237 ~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~~~gr 314 (328)
T PRK00080 237 VITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRTPRGR 314 (328)
T ss_pred CCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccCCchH
Confidence 0001 12334456677889998888886 55566554 6788888887665555555677 899999998665444
No 32
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.13 E-value=1.4e-08 Score=118.37 Aligned_cols=290 Identities=15% Similarity=0.134 Sum_probs=162.8
Q ss_pred cCCCccCccccchhhHHHHHHHHcCC--CCCeEEEEEEeCCCccHHHHHHHHHhhhccccC-----c-eeEEEecchhhc
Q 045458 22 TEPETIKELVGIESRLEKIRFLMGTG--SSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFD-----G-SSFLADVREKSE 93 (1170)
Q Consensus 22 ~~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~-----~-~~~~~~~~~~~~ 93 (1170)
.+...|+.++||+.++++|...+... ....+.+.|+|++|+|||++|+.+++++..... . .+++. ....
T Consensus 9 ~~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in-~~~~-- 85 (365)
T TIGR02928 9 EPDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN-CQIL-- 85 (365)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE-CCCC--
Confidence 34556778999999999999988641 233467899999999999999999987654322 1 23333 2222
Q ss_pred cCCcHHHHHHHHHHHHhh--cCCC-ccccchhhHHHHHHhhC--CCeEEEEEeCCCCHH-----HHHHhhcCc--CCC-C
Q 045458 94 KEGSVISLQKQLLSNLLK--LGDI-SIWHVEDGINIIGSRLR--QKKVLLIIDDVADVE-----QLQSLAGKR--DWF-G 160 (1170)
Q Consensus 94 ~~~~~~~l~~~ll~~l~~--~~~~-~~~~~~~~~~~i~~~L~--~k~~LlVLDdv~~~~-----~l~~l~~~~--~~~-~ 160 (1170)
.....+...++.++.. .... ...+..+....+.+.+. +++++||||+++... .+..+.... ... +
T Consensus 86 --~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~ 163 (365)
T TIGR02928 86 --DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDN 163 (365)
T ss_pred --CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCC
Confidence 1225667777777642 1111 11122334445555553 568999999998761 133333221 111 1
Q ss_pred CCcEEEEEeCCchhhhhhC-----CCCccEEECCCCChHHHHHHHHHhhc---CCCCCChhhHHHHHHHHHHhCCCchHH
Q 045458 161 PGSRILITTRDKQLLVAHE-----VDEEHILNLDVLNNDEALQLFSMKAF---KTHQPVGEYVELSERVLEYAGGLPLAL 232 (1170)
Q Consensus 161 ~gsrIIiTTR~~~v~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~GlPLal 232 (1170)
....+|.+|++........ .-....+.+++++.+|..+++..++- ......++..+.+.+++....|.|-.+
T Consensus 164 ~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~a 243 (365)
T TIGR02928 164 AKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKA 243 (365)
T ss_pred CeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHH
Confidence 3345566665543211110 00113689999999999999998863 222222333345566777778887443
Q ss_pred -HHHHHhh----c-C---CCHHHHHHHHHHhhcCCCchHHHHHHhhccCCChhhhhHhhhhccccc----ccCHHHHHH-
Q 045458 233 -KVLGSFL----I-G---RTADLWRSALERLKRDPSYKIMSILQISFDGLQGSEKKIFLDVACFFK----RWDRDYVAE- 298 (1170)
Q Consensus 233 -~~l~~~L----~-~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~----~~~~~~l~~- 298 (1170)
.++-... . + -+.+..+.+.+.+. .....-....||.+++.++..++...+ .+....+.+
T Consensus 244 l~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~ 316 (365)
T TIGR02928 244 IDLLRVAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEV 316 (365)
T ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 3322211 1 1 14555555555442 233445667899988877776653322 123333322
Q ss_pred ---HHhhCCCCcc------chhhhhhcccceeee
Q 045458 299 ---ILEGCGFSPV------IGLEVLIERSLLTVD 323 (1170)
Q Consensus 299 ---~~~~~g~~~~------~~l~~L~~~sLi~~~ 323 (1170)
+....|..+. ..+..|...|||+..
T Consensus 317 y~~~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 317 YKEVCEDIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 1122232221 237778888888875
No 33
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.08 E-value=3.1e-10 Score=123.30 Aligned_cols=199 Identities=22% Similarity=0.232 Sum_probs=102.7
Q ss_pred cccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHH------HH
Q 045458 30 LVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISL------QK 103 (1170)
Q Consensus 30 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l------~~ 103 (1170)
|+||++++++|.+++..+ ..+.+.|+|+.|+|||+|++.+.+.....-...+|+.......... .... .+
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~--~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESS--LRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHH--HHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhH--HHHHHHHHHHHH
Confidence 799999999999999763 3478999999999999999999998754332344444222211100 0111 11
Q ss_pred HHHHHHhhc-CCC--------ccccchhhHHHHHHhhC--CCeEEEEEeCCCCHH-----------HHHHhhcCcCCCCC
Q 045458 104 QLLSNLLKL-GDI--------SIWHVEDGINIIGSRLR--QKKVLLIIDDVADVE-----------QLQSLAGKRDWFGP 161 (1170)
Q Consensus 104 ~ll~~l~~~-~~~--------~~~~~~~~~~~i~~~L~--~k~~LlVLDdv~~~~-----------~l~~l~~~~~~~~~ 161 (1170)
.+...+... ... ...........+.+.+. +++++||+||++... .+..+..... ...
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~ 155 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL-SQQ 155 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----T
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc-ccC
Confidence 122222111 111 11122333344444443 345999999986555 1222222211 123
Q ss_pred CcEEEEEeCCchhhhh------hCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHH
Q 045458 162 GSRILITTRDKQLLVA------HEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKV 234 (1170)
Q Consensus 162 gsrIIiTTR~~~v~~~------~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 234 (1170)
...+|+++........ ........+.+++|+.+++++++...+-.. ...+...+..++|+..+||+|..|..
T Consensus 156 ~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 156 NVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp TEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred CceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 4445555554443332 011222369999999999999999865333 11112345678999999999998764
No 34
>PF05729 NACHT: NACHT domain
Probab=98.98 E-value=3e-09 Score=108.70 Aligned_cols=146 Identities=26% Similarity=0.362 Sum_probs=87.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccccC-----ceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHH
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYEFD-----GSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINI 126 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~f~-----~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~ 126 (1170)
|++.|+|.+|+||||+++.++.++..... ...++...+........ ..+.+.+....... ........
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~----~~~~~~~~-- 73 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNS-RSLADLLFDQLPES----IAPIEELL-- 73 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhcccc-chHHHHHHHhhccc----hhhhHHHH--
Confidence 58999999999999999999987765542 23334444444333221 23444444433211 11111111
Q ss_pred HHHhhCCCeEEEEEeCCCCHHH---------HHHhh-cCcC-CCCCCcEEEEEeCCchhhhhhC-CCCccEEECCCCChH
Q 045458 127 IGSRLRQKKVLLIIDDVADVEQ---------LQSLA-GKRD-WFGPGSRILITTRDKQLLVAHE-VDEEHILNLDVLNND 194 (1170)
Q Consensus 127 i~~~L~~k~~LlVLDdv~~~~~---------l~~l~-~~~~-~~~~gsrIIiTTR~~~v~~~~~-~~~~~~~~l~~L~~~ 194 (1170)
..-.-+.++++||||++|+... +..+. .... ...++.++|||+|......... ......+++.+|+++
T Consensus 74 ~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 74 QELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred HHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHH
Confidence 1112257899999999976532 11111 1111 1357899999999987622211 222248999999999
Q ss_pred HHHHHHHHhh
Q 045458 195 EALQLFSMKA 204 (1170)
Q Consensus 195 ea~~Lf~~~a 204 (1170)
+..+++.++.
T Consensus 154 ~~~~~~~~~f 163 (166)
T PF05729_consen 154 DIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHh
Confidence 9999997654
No 35
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.95 E-value=4.4e-08 Score=108.88 Aligned_cols=180 Identities=15% Similarity=0.101 Sum_probs=105.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSR 130 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~ 130 (1170)
.++++|+|++|+||||+++.+++.....--..+++.. . .....++...+...++... ...........+.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~-----~-~~~~~~~l~~i~~~lG~~~--~~~~~~~~~~~l~~~ 114 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVN-----T-RVDAEDLLRMVAADFGLET--EGRDKAALLRELEDF 114 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeC-----C-CCCHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHH
Confidence 3689999999999999999999876532001112211 1 1122556666666653211 111112222333322
Q ss_pred -----hCCCeEEEEEeCCCCHH--HHHHhhc---CcCCCCCCcEEEEEeCCchhhhhhC--------CCCccEEECCCCC
Q 045458 131 -----LRQKKVLLIIDDVADVE--QLQSLAG---KRDWFGPGSRILITTRDKQLLVAHE--------VDEEHILNLDVLN 192 (1170)
Q Consensus 131 -----L~~k~~LlVLDdv~~~~--~l~~l~~---~~~~~~~gsrIIiTTR~~~v~~~~~--------~~~~~~~~l~~L~ 192 (1170)
..+++.++|+||++... .++.+.. ..........|++|..... ..... ......+++++++
T Consensus 115 l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~-~~~l~~~~~~~l~~r~~~~~~l~~l~ 193 (269)
T TIGR03015 115 LIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEF-RETLQSPQLQQLRQRIIASCHLGPLD 193 (269)
T ss_pred HHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHH-HHHHcCchhHHHHhheeeeeeCCCCC
Confidence 25788999999998753 3444432 1111123335566655432 11111 1112368999999
Q ss_pred hHHHHHHHHHhhcCCC--CCChhhHHHHHHHHHHhCCCchHHHHHHHhh
Q 045458 193 NDEALQLFSMKAFKTH--QPVGEYVELSERVLEYAGGLPLALKVLGSFL 239 (1170)
Q Consensus 193 ~~ea~~Lf~~~a~~~~--~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L 239 (1170)
.+|..+++...+.... ....-..+..+.|++.++|.|..+..++..+
T Consensus 194 ~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 194 REETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999999987764222 1122345788999999999999999988765
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=6.9e-10 Score=121.14 Aligned_cols=85 Identities=20% Similarity=0.191 Sum_probs=44.9
Q ss_pred CCCCCCEEeccCCcCCcc-ccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCCC--ccccCCCCCc
Q 045458 655 LLTGLNVLNLNDCKNLVR-IPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQPP--SGIFHMKNLK 731 (1170)
Q Consensus 655 ~l~~L~~L~L~~~~~l~~-lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~lp--~~l~~l~~L~ 731 (1170)
.+++|+.|.++.|..... +-.....+|+|+.|.+.+|............+..|++|+|++|++...+ .-...++.|.
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence 345555555555543311 2222334666666666666432222222334566777777777776655 3344555565
Q ss_pred EEEecCCC
Q 045458 732 ALYFRGCK 739 (1170)
Q Consensus 732 ~L~L~~c~ 739 (1170)
.|+++.|.
T Consensus 275 ~Lnls~tg 282 (505)
T KOG3207|consen 275 QLNLSSTG 282 (505)
T ss_pred hhhccccC
Confidence 55555554
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.74 E-value=8.6e-10 Score=123.86 Aligned_cols=180 Identities=31% Similarity=0.488 Sum_probs=114.8
Q ss_pred CCcchhhcCCcccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCC
Q 045458 624 KKFPEIVESMEDLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQ 703 (1170)
Q Consensus 624 ~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~ 703 (1170)
..+|..++.+..|+.+.++.|.+..+|..+.++..|..|+|+.|+ +..+|..++.|+ |+.|.+++| ++..+|+.++.
T Consensus 88 ~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~ 164 (722)
T KOG0532|consen 88 SELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGL 164 (722)
T ss_pred ccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecC-ccccCCccccc
Confidence 445666666677777777778888888888888888888887765 456677777665 777777665 66677777777
Q ss_pred CCCCcEEEccCccCCCCCccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEecc
Q 045458 704 VESLEELHISGTAIRQPPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLS 783 (1170)
Q Consensus 704 l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls 783 (1170)
...|..|+.+.|.+..+|+.+..+.+|+.|.+..|... .+|+.+..| .|..||++
T Consensus 165 ~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~------------------------~lp~El~~L-pLi~lDfS 219 (722)
T KOG0532|consen 165 LPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE------------------------DLPEELCSL-PLIRLDFS 219 (722)
T ss_pred chhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh------------------------hCCHHHhCC-ceeeeecc
Confidence 77888888888888777777777777777766665532 233333322 25555555
Q ss_pred CCCCCCCCCcCccCCCCCCCEEECcCCCCcccchhh---hcCCCCCEeeccCc
Q 045458 784 DCDLGEGFIPNDIGNLRSLKVLCLSNNSFVSLPASI---SRLSKLECLNLNGC 833 (1170)
Q Consensus 784 ~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~lp~~i---~~l~~L~~L~L~~c 833 (1170)
+|++.. +|..+..|+.|++|.|.+|.+++-|..| +...--++|++.-|
T Consensus 220 cNkis~--iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 220 CNKISY--LPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred cCceee--cchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 555533 5555555555555555555555555433 12223344555544
No 38
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.71 E-value=1.2e-08 Score=112.30 Aligned_cols=280 Identities=20% Similarity=0.253 Sum_probs=186.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHH
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGS 129 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~ 129 (1170)
..|.+.++|.|||||||++-.+.. ++..|+..+++.+.+...+.... ...+...+. ....+-+.....+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v----~~~~ag~~g----l~~~~g~~~~~~~~~ 83 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALV----FPTLAGALG----LHVQPGDSAVDTLVR 83 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHh----HHHHHhhcc----cccccchHHHHHHHH
Confidence 458899999999999999999999 88899998888877665543222 112222222 111122334556777
Q ss_pred hhCCCeEEEEEeCCCCHHH-HHHhhcCcCCCCCCcEEEEEeCCchhhhhhCCCCccEEECCCCChH-HHHHHHHHhhcCC
Q 045458 130 RLRQKKVLLIIDDVADVEQ-LQSLAGKRDWFGPGSRILITTRDKQLLVAHEVDEEHILNLDVLNND-EALQLFSMKAFKT 207 (1170)
Q Consensus 130 ~L~~k~~LlVLDdv~~~~~-l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~~~l~~L~~~-ea~~Lf~~~a~~~ 207 (1170)
+..+++.++|+||-.+... -..+...+....+.-+|+.|+|+.. .+.....+.++.|+.. ++.++|...+...
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~-----l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~ 158 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAI-----LVAGEVHRRVPSLSLFDEAIELFVCRAVLV 158 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhh-----cccccccccCCccccCCchhHHHHHHHHHh
Confidence 7889999999999876533 3333333333356678999999754 2444448888888887 7999998776322
Q ss_pred CC---CChhhHHHHHHHHHHhCCCchHHHHHHHhhcCCCHHHHHHHH----HHhhcC------CCchHHHHHHhhccCCC
Q 045458 208 HQ---PVGEYVELSERVLEYAGGLPLALKVLGSFLIGRTADLWRSAL----ERLKRD------PSYKIMSILQISFDGLQ 274 (1170)
Q Consensus 208 ~~---~~~~~~~~~~~i~~~~~GlPLal~~l~~~L~~~~~~~w~~~l----~~l~~~------~~~~i~~~l~~sy~~L~ 274 (1170)
.. -.........+|.+..+|.|++|..+++..+.-..++-...+ ..++.. ........+..||.-|.
T Consensus 159 ~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLt 238 (414)
T COG3903 159 ALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLT 238 (414)
T ss_pred ccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhh
Confidence 21 122344567899999999999999999888765544333222 223322 12345677899999999
Q ss_pred hhhhhHhhhhcccccccCHHHHHHHHhhCCCC-------ccchhhhhhcccceeeeC---CCceechHHHHHHHHHHHhc
Q 045458 275 GSEKKIFLDVACFFKRWDRDYVAEILEGCGFS-------PVIGLEVLIERSLLTVDE---DNTLGMHDLLQELGQLIVAR 344 (1170)
Q Consensus 275 ~~~k~~fl~~a~f~~~~~~~~l~~~~~~~g~~-------~~~~l~~L~~~sLi~~~~---~~~~~mH~li~~~~~~i~~~ 344 (1170)
.-++-.|.-++.|..+|+.+ +.. +.+.|-. ....+..+++++++.... .-.++.-+-.+.|+.+...+
T Consensus 239 gwe~~~~~rLa~~~g~f~~~-l~~-~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r 316 (414)
T COG3903 239 GWERALFGRLAVFVGGFDLG-LAL-AVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHR 316 (414)
T ss_pred hHHHHHhcchhhhhhhhccc-HHH-HHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999888776 222 2222221 123366788999887653 22466667777777766665
Q ss_pred c
Q 045458 345 Q 345 (1170)
Q Consensus 345 ~ 345 (1170)
.
T Consensus 317 ~ 317 (414)
T COG3903 317 S 317 (414)
T ss_pred h
Confidence 3
No 39
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.71 E-value=5.9e-07 Score=107.53 Aligned_cols=249 Identities=14% Similarity=0.064 Sum_probs=132.1
Q ss_pred cCCCccCccccchhhHHHHHHHHcC---CCCCeEEEEEEeCCCccHHHHHHHHHhhhccc-----cC-c-eeEEEecchh
Q 045458 22 TEPETIKELVGIESRLEKIRFLMGT---GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE-----FD-G-SSFLADVREK 91 (1170)
Q Consensus 22 ~~~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~-----f~-~-~~~~~~~~~~ 91 (1170)
.+..+|+.++|||.++++|...|.. ++....++.|+|++|.|||+.++.|.+++... .+ . .+++. ....
T Consensus 749 ~~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN-Cm~L 827 (1164)
T PTZ00112 749 QLDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN-GMNV 827 (1164)
T ss_pred CcccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe-CCcc
Confidence 4556678999999999999887754 22333577899999999999999999876432 12 1 22332 2221
Q ss_pred hccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhC---CCeEEEEEeCCCCHH---H--HHHhhcCcCCCCCCc
Q 045458 92 SEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLR---QKKVLLIIDDVADVE---Q--LQSLAGKRDWFGPGS 163 (1170)
Q Consensus 92 ~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~---~k~~LlVLDdv~~~~---~--l~~l~~~~~~~~~gs 163 (1170)
. ....+...|..++............+..+.+.+.+. ....+||||+|+... | +-.+..... ..++
T Consensus 828 s----tp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~--~s~S 901 (1164)
T PTZ00112 828 V----HPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT--KINS 901 (1164)
T ss_pred C----CHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh--ccCC
Confidence 1 124555566666643222222222333344444432 234689999997543 1 222222111 2455
Q ss_pred EEEE--EeCCchhh----hhhCC-CCccEEECCCCChHHHHHHHHHhhcCCC--CCChhhHHHHHHHHHHhCCCchHHHH
Q 045458 164 RILI--TTRDKQLL----VAHEV-DEEHILNLDVLNNDEALQLFSMKAFKTH--QPVGEYVELSERVLEYAGGLPLALKV 234 (1170)
Q Consensus 164 rIIi--TTR~~~v~----~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~~i~~~~~GlPLal~~ 234 (1170)
+|+| +|.+.... ..... -....+..++++.+|-.+++..++-... ...+..+-+|..++...|-.-.||.+
T Consensus 902 KLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDI 981 (1164)
T PTZ00112 902 KLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQI 981 (1164)
T ss_pred eEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHH
Confidence 5544 34332211 11110 0112467799999999999998875321 12233333444444444455666666
Q ss_pred HHHhhcCC-----CHHHHHHHHHHhhcCCCchHHHHHHhhccCCChhhhhHhhhh
Q 045458 235 LGSFLIGR-----TADLWRSALERLKRDPSYKIMSILQISFDGLQGSEKKIFLDV 284 (1170)
Q Consensus 235 l~~~L~~~-----~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~ 284 (1170)
+-.+...+ ..+.-..+..++... .+.-....||.++|-++..+
T Consensus 982 LRrAgEikegskVT~eHVrkAleeiE~s-------rI~e~IktLPlHqKLVLlAL 1029 (1164)
T PTZ00112 982 CRKAFENKRGQKIVPRDITEATNQLFDS-------PLTNAINYLPWPFKMFLTCL 1029 (1164)
T ss_pred HHHHHhhcCCCccCHHHHHHHHHHHHhh-------hHHHHHHcCCHHHHHHHHHH
Confidence 55444211 233344444333211 12333457887776655533
No 40
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=3.1e-09 Score=116.12 Aligned_cols=184 Identities=20% Similarity=0.155 Sum_probs=114.2
Q ss_pred hhcCCcccCeEeccCcCCC---ccCccccCCCCCCEEeccCCcCCcccccc-CCCCCCCCEEEeeCcCCCC-CCccccCC
Q 045458 629 IVESMEDLSELFLDGTSIT---EVPSSIELLTGLNVLNLNDCKNLVRIPDS-INGLKSLQSLNLSGCFKLE-NVPETLGQ 703 (1170)
Q Consensus 629 ~~~~l~~L~~L~l~~~~l~---~lp~~i~~l~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~L~~c~~l~-~l~~~l~~ 703 (1170)
....+++++.|+++.|-+. .+......|++|+.|+++.|...-...+. -..+++|+.|.|++|.... .+...+..
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 4455666666666666554 33444566777777777776543322211 1247788888888886542 23333445
Q ss_pred CCCCcEEEccCcc-CCCCCccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEec
Q 045458 704 VESLEELHISGTA-IRQPPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDL 782 (1170)
Q Consensus 704 l~~L~~L~L~~~~-i~~lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~L 782 (1170)
+|+|+.|++..|. +.........+..|+.|+|++|..... ..-.....++.|+.|++
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~----------------------~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDF----------------------DQGYKVGTLPGLNQLNL 278 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccc----------------------ccccccccccchhhhhc
Confidence 6888888888874 332233344567788888887764321 11123567777888888
Q ss_pred cCCCCCCCCCcCc-----cCCCCCCCEEECcCCCCcccch--hhhcCCCCCEeeccCcc
Q 045458 783 SDCDLGEGFIPND-----IGNLRSLKVLCLSNNSFVSLPA--SISRLSKLECLNLNGCK 834 (1170)
Q Consensus 783 s~c~l~~~~~~~~-----l~~l~sL~~L~Ls~n~l~~lp~--~i~~l~~L~~L~L~~c~ 834 (1170)
+.|.+.+-..|+. ...+++|++|+++.|++..+++ .+..+++|+.|.+..++
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence 8888766555554 4667888888888888876652 45556666766655443
No 41
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.70 E-value=1.5e-07 Score=103.05 Aligned_cols=245 Identities=21% Similarity=0.323 Sum_probs=141.9
Q ss_pred CCCccCccccchhhH---HHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHH
Q 045458 23 EPETIKELVGIESRL---EKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVI 99 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~---~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 99 (1170)
.|...+++||-+--+ .-|.+++.. +.+.-..+||++|+||||||+.++......|... +.....+.
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~~--~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~---------sAv~~gvk 87 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVEA--GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEAL---------SAVTSGVK 87 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHhc--CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEe---------ccccccHH
Confidence 456667777776544 345556654 4566677999999999999999998776665321 11111112
Q ss_pred HHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCC--CHHHHHHhhcCcCCCCCCcEEEE--EeCCchhh
Q 045458 100 SLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVA--DVEQLQSLAGKRDWFGPGSRILI--TTRDKQLL 175 (1170)
Q Consensus 100 ~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~--~~~~l~~l~~~~~~~~~gsrIIi--TTR~~~v~ 175 (1170)
+ .++++.+. -+.+..+++.+|++|.|. +..|-+.+++.. ..|.-|+| ||-++...
T Consensus 88 d-lr~i~e~a-----------------~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ 146 (436)
T COG2256 88 D-LREIIEEA-----------------RKNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFE 146 (436)
T ss_pred H-HHHHHHHH-----------------HHHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCee
Confidence 2 22222221 123345899999999995 556777777664 36776666 55554322
Q ss_pred hhh-CCCCccEEECCCCChHHHHHHHHHhhcCCCCC-----ChhhHHHHHHHHHHhCCCchHHHH---HHHhhcC-C---
Q 045458 176 VAH-EVDEEHILNLDVLNNDEALQLFSMKAFKTHQP-----VGEYVELSERVLEYAGGLPLALKV---LGSFLIG-R--- 242 (1170)
Q Consensus 176 ~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-----~~~~~~~~~~i~~~~~GlPLal~~---l~~~L~~-~--- 242 (1170)
... -....+++++++|+.+|-.+++.+.+-..... ....++....+++.++|---+.-. ++..+.. .
T Consensus 147 ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~ 226 (436)
T COG2256 147 LNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVL 226 (436)
T ss_pred ecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCccc
Confidence 111 12334599999999999999998744222211 112345667788888886543322 2222222 2
Q ss_pred CHHHHHHHHHHhhc------CCCchHHHHHHhhccCCChhhhhHhhhhcccccccCHHHHHHHH
Q 045458 243 TADLWRSALERLKR------DPSYKIMSILQISFDGLQGSEKKIFLDVACFFKRWDRDYVAEIL 300 (1170)
Q Consensus 243 ~~~~w~~~l~~l~~------~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~~~~l~~~~ 300 (1170)
..+..+..+++-.. +..-++..+|..|..+=++++. ++.+.-++-.|.+..++.+.+
T Consensus 227 ~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAA-LyylARmi~~GeDp~yiARRl 289 (436)
T COG2256 227 ILELLEEILQRRSARFDKDGDAHYDLISALHKSVRGSDPDAA-LYYLARMIEAGEDPLYIARRL 289 (436)
T ss_pred CHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhhccCCcCHH-HHHHHHHHhcCCCHHHHHHHH
Confidence 24555555554221 1123577788888887766543 222222455566666666554
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.69 E-value=2.5e-08 Score=117.52 Aligned_cols=180 Identities=34% Similarity=0.526 Sum_probs=133.0
Q ss_pred CCcccCeEeccCcCCCccCccccCCC-CCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEE
Q 045458 632 SMEDLSELFLDGTSITEVPSSIELLT-GLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEEL 710 (1170)
Q Consensus 632 ~l~~L~~L~l~~~~l~~lp~~i~~l~-~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L 710 (1170)
.++.+..|.+.++.+.+++.....+. +|+.|+++++. +..+|..+..+++|+.|++++|. +..+|...+.+++|+.|
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNL 191 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhhe
Confidence 34667777888888888887777774 88888887765 34444556778888888888774 44455555567888888
Q ss_pred EccCccCCCCCccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCC
Q 045458 711 HISGTAIRQPPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEG 790 (1170)
Q Consensus 711 ~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~ 790 (1170)
++++|.+..+|..+..+..|++|.++++... ..+..+..+.++..|.+.++.+..
T Consensus 192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~------------------------~~~~~~~~~~~l~~l~l~~n~~~~- 246 (394)
T COG4886 192 DLSGNKISDLPPEIELLSALEELDLSNNSII------------------------ELLSSLSNLKNLSGLELSNNKLED- 246 (394)
T ss_pred eccCCccccCchhhhhhhhhhhhhhcCCcce------------------------ecchhhhhcccccccccCCceeee-
Confidence 9999988888887777777888888887521 233445667777777777777643
Q ss_pred CCcCccCCCCCCCEEECcCCCCcccchhhhcCCCCCEeeccCccCCCcCC
Q 045458 791 FIPNDIGNLRSLKVLCLSNNSFVSLPASISRLSKLECLNLNGCKKLQSLP 840 (1170)
Q Consensus 791 ~~~~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 840 (1170)
++..++.+++|+.|++++|.++.++. +..+.+|+.|+++++.....+|
T Consensus 247 -~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 247 -LPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred -ccchhccccccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence 46677888889999999998888886 8888889999998866555444
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.67 E-value=5.5e-09 Score=108.21 Aligned_cols=37 Identities=32% Similarity=0.423 Sum_probs=27.7
Q ss_pred cccCeEeccCcCCCccCccccCCCCCCEEeccCCcCC
Q 045458 634 EDLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNL 670 (1170)
Q Consensus 634 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l 670 (1170)
+.|+++++++|.|+.+..++.-.|.++.|+++.|...
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~ 320 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR 320 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEecccccee
Confidence 4577777778888888888777777777777776543
No 44
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.65 E-value=5.3e-09 Score=108.32 Aligned_cols=126 Identities=25% Similarity=0.296 Sum_probs=81.9
Q ss_pred CCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCCCccccCCCCCcEEEecCCCCCCCCCCcccCccccccccc
Q 045458 680 LKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQPPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRS 759 (1170)
Q Consensus 680 l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~ 759 (1170)
...|++|++++|. +..+.++..-.|.++.|+++.|.+..+.. +..+++|+.|+|++|.....
T Consensus 283 Wq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~---------------- 344 (490)
T KOG1259|consen 283 WQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAEC---------------- 344 (490)
T ss_pred Hhhhhhccccccc-hhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhh----------------
Confidence 4557777777763 33455555556777777777777776654 67777777777777764321
Q ss_pred CCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCcccc--hhhhcCCCCCEeeccCcc
Q 045458 760 LDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVSLP--ASISRLSKLECLNLNGCK 834 (1170)
Q Consensus 760 ~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~c~ 834 (1170)
-.+-..+-+.+.|.|++|.+. ....++.+-+|..|++++|+|..+. ..|+++|.|+.|.|.++|
T Consensus 345 --------~Gwh~KLGNIKtL~La~N~iE---~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 345 --------VGWHLKLGNIKTLKLAQNKIE---TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred --------hhhHhhhcCEeeeehhhhhHh---hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 111224456777777777663 2334666777788888888777554 357778888888877766
No 45
>PRK06893 DNA replication initiation factor; Validated
Probab=98.64 E-value=8.6e-07 Score=95.24 Aligned_cols=178 Identities=16% Similarity=0.178 Sum_probs=101.1
Q ss_pred CCCccCccccchhhH--HHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHH
Q 045458 23 EPETIKELVGIESRL--EKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVIS 100 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~--~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 100 (1170)
.+..-++|+|-+... ..+.+.... ...+.+.|||.+|+|||+||+++++.+..+...+.|+.. ... ..
T Consensus 11 ~~~~fd~f~~~~~~~~~~~~~~~~~~--~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~-~~~-------~~ 80 (229)
T PRK06893 11 DDETLDNFYADNNLLLLDSLRKNFID--LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL-SKS-------QY 80 (229)
T ss_pred CcccccccccCChHHHHHHHHHHhhc--cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH-HHh-------hh
Confidence 344457787544322 112222221 233678999999999999999999987655555566651 100 00
Q ss_pred HHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH---HHHHH-hhcCcCC-CCCCcEEEEEeCCc---
Q 045458 101 LQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV---EQLQS-LAGKRDW-FGPGSRILITTRDK--- 172 (1170)
Q Consensus 101 l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~---~~l~~-l~~~~~~-~~~gsrIIiTTR~~--- 172 (1170)
... .+.+.++ +.-+|||||++.. .+|+. +...+.. ...|.++||+|.+.
T Consensus 81 ~~~----------------------~~~~~~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 81 FSP----------------------AVLENLE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred hhH----------------------HHHhhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 000 1111222 2348999999763 33432 2211111 12456665554443
Q ss_pred -------hhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHHHH
Q 045458 173 -------QLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVLGS 237 (1170)
Q Consensus 173 -------~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~ 237 (1170)
.+....... ..+++++++.++.++++.+.+....- .-.++...-+++++.|..-++..+-.
T Consensus 138 ~l~~~~~~L~sRl~~g--~~~~l~~pd~e~~~~iL~~~a~~~~l--~l~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 138 ALSIKLPDLASRLTWG--EIYQLNDLTDEQKIIVLQRNAYQRGI--ELSDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HccccchhHHHHHhcC--CeeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 222222222 38999999999999999998864432 23346677788888777666554433
No 46
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.63 E-value=1e-09 Score=123.22 Aligned_cols=189 Identities=25% Similarity=0.342 Sum_probs=156.4
Q ss_pred cCeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCc
Q 045458 636 LSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGT 715 (1170)
Q Consensus 636 L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~ 715 (1170)
-...+++.|.+.++|..+..+..|+.+.+..|. +..+|..++++..|..|+|+.| .+..+|..+..++ |+.|-+++|
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEecC
Confidence 345678889999999999999999999888754 5667888999999999999988 4556676666553 899999999
Q ss_pred cCCCCCccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCc
Q 045458 716 AIRQPPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPND 795 (1170)
Q Consensus 716 ~i~~lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~ 795 (1170)
.++.+|..++.+..|..|+.+.|... .+|+.++++.+|+.|.+..|++.. +|..
T Consensus 154 kl~~lp~~ig~~~tl~~ld~s~nei~------------------------slpsql~~l~slr~l~vrRn~l~~--lp~E 207 (722)
T KOG0532|consen 154 KLTSLPEEIGLLPTLAHLDVSKNEIQ------------------------SLPSQLGYLTSLRDLNVRRNHLED--LPEE 207 (722)
T ss_pred ccccCCcccccchhHHHhhhhhhhhh------------------------hchHHhhhHHHHHHHHHhhhhhhh--CCHH
Confidence 99999999999999999999988743 467778899999999999999865 7887
Q ss_pred cCCCCCCCEEECcCCCCcccchhhhcCCCCCEeeccCccCCCcCCC------CCcccceeeccCCc
Q 045458 796 IGNLRSLKVLCLSNNSFVSLPASISRLSKLECLNLNGCKKLQSLPP------LPARMRIASVNGCA 855 (1170)
Q Consensus 796 l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~------lp~sL~~L~i~~C~ 855 (1170)
+.. -.|..||+++|++..||.++.+|..|++|.|.+|| |++=|. .-.-.++|++.-|.
T Consensus 208 l~~-LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 208 LCS-LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred HhC-CceeeeecccCceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhcc
Confidence 874 46899999999999999999999999999999877 454442 11234788888884
No 47
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.62 E-value=4.1e-08 Score=115.72 Aligned_cols=193 Identities=26% Similarity=0.392 Sum_probs=127.2
Q ss_pred EEeecCcccCCchhccc--CCceEEEcCCCCCCCCCCCCCCC--ceeEEEccCCChHHHhhcCCCCCCCcEEEcCCCCCC
Q 045458 407 LLGICNLKLPEGLECLS--NKLRLLDWPGYPLKSLPPNLQLD--KTIEFKMLCSRIEELWKGIKSLNMLKVMKVSYSQSL 482 (1170)
Q Consensus 407 ~L~l~~~~l~~~~~~l~--~~Lr~L~l~~~~l~~lp~~~~l~--~L~~L~L~~s~i~~L~~~l~~l~~L~~L~Ls~~~~l 482 (1170)
.+....+.+...+..+. ..+..|++.+++++++|...... +|.+|+++.+.+.++|..+..+++|+.|++++|+ +
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l 175 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-L 175 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-h
Confidence 35555555532222222 36889999999999999988554 8999999999999998888899999999999887 4
Q ss_pred CcCCC-CCCCCCccEEEeeccCCcccccccccCCCCccEEEeeCCCCCCccCccccCCcccEEEecCCCCCCccccccCC
Q 045458 483 IKIPD-FTGVPNLEKLYLEGCTRLREIHPSLLLHSKLVILNLTGCTSLATLPGKIFMKSVKKLVLSGCSKLKKFPKIVGN 561 (1170)
Q Consensus 483 ~~~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~~~~l~~~l~~ 561 (1170)
..+|. .+..++|+.|+++++ .+..+|..+..+..|+.|.+.++...........+.++..|.+.++. ...++..++.
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~~~~ 253 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPESIGN 253 (394)
T ss_pred hhhhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccchhcc
Confidence 44444 448888888888885 56677776666667777777775433333222225555555544432 2223455566
Q ss_pred CCCCcEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCc
Q 045458 562 MECLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLP 603 (1170)
Q Consensus 562 l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp 603 (1170)
+.+++.|+++++.+..++. +..+.+|+.|+++++.....+|
T Consensus 254 l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 254 LSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence 6666666666666666665 5666666666666655444443
No 48
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.59 E-value=7e-07 Score=102.89 Aligned_cols=204 Identities=15% Similarity=0.165 Sum_probs=110.8
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccc-cCce-eEEEecchhhccCCcHHH
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE-FDGS-SFLADVREKSEKEGSVIS 100 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~-f~~~-~~~~~~~~~~~~~~~~~~ 100 (1170)
-|...++++|++..++.+.+++..+ ..+.+.++|++|+||||+|+.+++.+... +... +++. +.+...... ..
T Consensus 10 ~P~~~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~-~~~~~~~~~--~~ 84 (337)
T PRK12402 10 RPALLEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN-VADFFDQGK--KY 84 (337)
T ss_pred CCCcHHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec-hhhhhhcch--hh
Confidence 3555678999999999999988753 34567899999999999999999876433 1222 2222 221110000 00
Q ss_pred HHH--HHHHHHhhcCCCccccchhhHHHHHHh---h--CCCeEEEEEeCCCCHH--HHHHhhcCcCCCCCCcEEEEEeCC
Q 045458 101 LQK--QLLSNLLKLGDISIWHVEDGINIIGSR---L--RQKKVLLIIDDVADVE--QLQSLAGKRDWFGPGSRILITTRD 171 (1170)
Q Consensus 101 l~~--~ll~~l~~~~~~~~~~~~~~~~~i~~~---L--~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~ 171 (1170)
+.. .....+...........+.....++.. . ...+-+||+||++... ..+.+........+.+++|+||..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~ 164 (337)
T PRK12402 85 LVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQ 164 (337)
T ss_pred hhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 000 000000000000000011111111111 1 1334589999997552 233343333333456788888754
Q ss_pred ch-hhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHH
Q 045458 172 KQ-LLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKV 234 (1170)
Q Consensus 172 ~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 234 (1170)
.. +.... ......+++.+++.++..+++...+-..... -..+.+..++++++|.+-.+..
T Consensus 165 ~~~~~~~L-~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 165 PSKLIPPI-RSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhhCchhh-cCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 32 21211 1223478999999999999998876433222 3346678888899887655543
No 49
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.59 E-value=1.9e-06 Score=101.33 Aligned_cols=183 Identities=21% Similarity=0.315 Sum_probs=109.7
Q ss_pred CCCccCccccchhhHHH---HHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHH
Q 045458 23 EPETIKELVGIESRLEK---IRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVI 99 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 99 (1170)
.|...+++||.+..+.. |.+++.. +..+.+.|+|++|+||||+|+.+++.....|. .+.. . ... .
T Consensus 7 RP~~l~d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~---~l~a---~---~~~-~ 74 (413)
T PRK13342 7 RPKTLDEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGATDAPFE---ALSA---V---TSG-V 74 (413)
T ss_pred CCCCHHHhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCEE---EEec---c---ccc-H
Confidence 35566789999988666 7887764 34567889999999999999999987654431 1110 0 011 1
Q ss_pred HHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEE--eCCchhh
Q 045458 100 SLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILIT--TRDKQLL 175 (1170)
Q Consensus 100 ~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiT--TR~~~v~ 175 (1170)
...++++.... .....+++.+|++|+++.. .+.+.+..... .|..++|. |.+....
T Consensus 75 ~~ir~ii~~~~-----------------~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~ 134 (413)
T PRK13342 75 KDLREVIEEAR-----------------QRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFE 134 (413)
T ss_pred HHHHHHHHHHH-----------------HhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhh
Confidence 11122222211 0111357889999999754 45555555433 34555543 3332211
Q ss_pred h-hhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCC-hhhHHHHHHHHHHhCCCchHHHHHHH
Q 045458 176 V-AHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPV-GEYVELSERVLEYAGGLPLALKVLGS 237 (1170)
Q Consensus 176 ~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~GlPLal~~l~~ 237 (1170)
. ..-......+++.+++.++..+++...+....... ....+....++++++|.+..+..+..
T Consensus 135 l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 135 VNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred ccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 1 11112224899999999999999987653211111 23346678899999999877655443
No 50
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.55 E-value=2.9e-09 Score=113.53 Aligned_cols=140 Identities=25% Similarity=0.278 Sum_probs=94.6
Q ss_pred CCCCCCCCEEEeeCcCCCCC----CccccCCCCCCcEEEccCccCC-----CCCccccCCCCCcEEEecCCCCCCCCCCc
Q 045458 677 INGLKSLQSLNLSGCFKLEN----VPETLGQVESLEELHISGTAIR-----QPPSGIFHMKNLKALYFRGCKGSPSSTSW 747 (1170)
Q Consensus 677 l~~l~~L~~L~L~~c~~l~~----l~~~l~~l~~L~~L~L~~~~i~-----~lp~~l~~l~~L~~L~L~~c~~~~~~~~~ 747 (1170)
+.+-+.|+++....|..-.. +...+...+.|+.+.+..|.|. -+...+.++++|+.|+|.+|..+...
T Consensus 153 ~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg--- 229 (382)
T KOG1909|consen 153 AASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG--- 229 (382)
T ss_pred cCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH---
Confidence 34456777777776643221 2344555678888888877765 22446678999999999887643211
Q ss_pred ccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCc---C-ccCCCCCCCEEECcCCCCc-----ccchh
Q 045458 748 SRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIP---N-DIGNLRSLKVLCLSNNSFV-----SLPAS 818 (1170)
Q Consensus 748 ~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~---~-~l~~l~sL~~L~Ls~n~l~-----~lp~~ 818 (1170)
...+...++.+++|+.|++++|.+.+.... . .-...++|+.|.+.+|.++ .+-.+
T Consensus 230 ----------------s~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~ 293 (382)
T KOG1909|consen 230 ----------------SVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAAC 293 (382)
T ss_pred ----------------HHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHH
Confidence 112333466778999999999988543211 1 1234789999999999887 34456
Q ss_pred hhcCCCCCEeeccCccC
Q 045458 819 ISRLSKLECLNLNGCKK 835 (1170)
Q Consensus 819 i~~l~~L~~L~L~~c~~ 835 (1170)
+...|.|+.|+|++|+.
T Consensus 294 ~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 294 MAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhcchhhHHhcCCcccc
Confidence 77789999999999863
No 51
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=4.1e-06 Score=96.62 Aligned_cols=201 Identities=15% Similarity=0.178 Sum_probs=112.6
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHH
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQ 102 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 102 (1170)
-|...+++||-+..++.+...+..+ .-.+.+.++|+.|+||||+|+.+++.+....... . ...........+.
T Consensus 11 rP~~~~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~---~---~pc~~c~~c~~~~ 83 (363)
T PRK14961 11 RPQYFRDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT---S---NPCRKCIICKEIE 83 (363)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC---C---CCCCCCHHHHHHh
Confidence 3455678999999999999988753 2346789999999999999999998764221100 0 0000000000000
Q ss_pred HHHHHHHhhcCCCccccchhhHHHHHHhh-----CCCeEEEEEeCCCCHH--HHHHhhcCcCCCCCCcEEEEEeCCchhh
Q 045458 103 KQLLSNLLKLGDISIWHVEDGINIIGSRL-----RQKKVLLIIDDVADVE--QLQSLAGKRDWFGPGSRILITTRDKQLL 175 (1170)
Q Consensus 103 ~~ll~~l~~~~~~~~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~~v~ 175 (1170)
....-.+...........++ +..+.+.+ .+++-++|+|+++... .++.+........+..++|++|.+..-.
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l 162 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKI 162 (363)
T ss_pred cCCCCceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhh
Confidence 00000000000000000111 11111111 2355689999998664 4566665555555677788777654322
Q ss_pred hhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHH
Q 045458 176 VAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALK 233 (1170)
Q Consensus 176 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 233 (1170)
...-......+++++++.++..+.+...+..... ....+.+..|++.++|.|-.+.
T Consensus 163 ~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~--~i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 163 PKTILSRCLQFKLKIISEEKIFNFLKYILIKESI--DTDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred hHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 1111222248999999999999998876643321 1233567788999999886443
No 52
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=5.4e-06 Score=98.55 Aligned_cols=194 Identities=17% Similarity=0.138 Sum_probs=113.3
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhcc--ccCceeEEEecchhhc--cCCcH
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSY--EFDGSSFLADVREKSE--KEGSV 98 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~~~~~~~~~~~--~~~~~ 98 (1170)
.|...+++||-+...+.|..++..+. -...+.++|++|+||||+|+.+++.+.. .++..++......... .+..+
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv 87 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDV 87 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCce
Confidence 35566789999999999998887642 3467799999999999999999987642 1222222211000000 00000
Q ss_pred HHHHHHHHHHHhhcCCCccccchhhHHHHHHh-----hCCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCC
Q 045458 99 ISLQKQLLSNLLKLGDISIWHVEDGINIIGSR-----LRQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRD 171 (1170)
Q Consensus 99 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~-----L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~ 171 (1170)
. .+...... ..++ +..+.+. ..+++-++|+|+++.. ..++.+...+....+.+.+|++|..
T Consensus 88 ~--------el~~~~~~---~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~ 155 (504)
T PRK14963 88 L--------EIDAASNN---SVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTE 155 (504)
T ss_pred E--------EecccccC---CHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Confidence 0 00000000 0111 1112221 1245668899999754 4566666655544556666666654
Q ss_pred ch-hhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHH
Q 045458 172 KQ-LLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLAL 232 (1170)
Q Consensus 172 ~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 232 (1170)
.. +.... ......+++.+++.++..+++...+-..... ...+.+..|++.++|.+--+
T Consensus 156 ~~kl~~~I-~SRc~~~~f~~ls~~el~~~L~~i~~~egi~--i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 156 PEKMPPTI-LSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE--AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred hhhCChHH-hcceEEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 32 22221 1223489999999999999998877443322 23456788999999988544
No 53
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.50 E-value=2.3e-06 Score=92.31 Aligned_cols=177 Identities=18% Similarity=0.230 Sum_probs=103.1
Q ss_pred cCcccc--chhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHH
Q 045458 27 IKELVG--IESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQ 104 (1170)
Q Consensus 27 ~~~~vG--r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (1170)
.++|++ .+..++++.+++.. ...+.|.|+|.+|+|||+||+.++++........+++. +.... ..
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~----------~~ 80 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELA----------QA 80 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHH----------Hh
Confidence 456763 44567778877643 34578899999999999999999987654433344443 21111 00
Q ss_pred HHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH---H-HHHhhcCcCC-CCCCcEEEEEeCCchhhhh--
Q 045458 105 LLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVE---Q-LQSLAGKRDW-FGPGSRILITTRDKQLLVA-- 177 (1170)
Q Consensus 105 ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~---~-l~~l~~~~~~-~~~gsrIIiTTR~~~v~~~-- 177 (1170)
. .. +.+.+.+ .-+|||||++... . .+.+...... ...+.++|+||+.......
T Consensus 81 ~-~~------------------~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~ 140 (226)
T TIGR03420 81 D-PE------------------VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLR 140 (226)
T ss_pred H-HH------------------HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcc
Confidence 0 00 1111222 2389999997543 1 2233222111 1234589998885431100
Q ss_pred ----h-CCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHHHHh
Q 045458 178 ----H-EVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVLGSF 238 (1170)
Q Consensus 178 ----~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~ 238 (1170)
. .......+++++++.++...++...+-... ..-..+....+++++.|+|..+..+...
T Consensus 141 ~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~--~~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 141 LPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRG--LQLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred cHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 0 111123799999999999999987653222 1223356677888889988877766443
No 54
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=8.9e-06 Score=92.85 Aligned_cols=201 Identities=13% Similarity=0.091 Sum_probs=114.2
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhcccc--CceeE-E--EecchhhccCCc
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEF--DGSSF-L--ADVREKSEKEGS 97 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~-~--~~~~~~~~~~~~ 97 (1170)
.|...++++|-+...+.|.+.+..+ .-...+.++|+.|+||+|+|..+++.+-.+- ..... . ..+. .....
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~-~~~~c-- 89 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA-IDPDH-- 89 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc-CCCCC--
Confidence 4555678999999999999988764 2346788999999999999999998652211 10000 0 0000 00000
Q ss_pred HHHHHHHHHHHH-------hh---cCCC---ccccchhhHHHHHHhhC-----CCeEEEEEeCCCCH--HHHHHhhcCcC
Q 045458 98 VISLQKQLLSNL-------LK---LGDI---SIWHVEDGINIIGSRLR-----QKKVLLIIDDVADV--EQLQSLAGKRD 157 (1170)
Q Consensus 98 ~~~l~~~ll~~l-------~~---~~~~---~~~~~~~~~~~i~~~L~-----~k~~LlVLDdv~~~--~~l~~l~~~~~ 157 (1170)
..-+.+...- .. .+.. ..-.+++ +..+.+.+. +++.++|+||++.. .....+...+.
T Consensus 90 --~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LE 166 (365)
T PRK07471 90 --PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLE 166 (365)
T ss_pred --hHHHHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHh
Confidence 0000010000 00 0000 0001122 222333332 46678999999754 44555554444
Q ss_pred CCCCCcEEEEEeCCchhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHHH
Q 045458 158 WFGPGSRILITTRDKQLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVLG 236 (1170)
Q Consensus 158 ~~~~gsrIIiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~ 236 (1170)
...+++.+|++|.+............+.+.+.+++.++..+++...... .. .+....+++.++|.|+....+.
T Consensus 167 epp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 167 EPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---LP---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred cCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 3346777788777764332222334458999999999999999876411 11 1223678999999998665553
No 55
>PLN03025 replication factor C subunit; Provisional
Probab=98.48 E-value=4.3e-06 Score=94.93 Aligned_cols=186 Identities=14% Similarity=0.197 Sum_probs=108.7
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhcc-ccCceeEEEecchhhccCCcHHHH
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSY-EFDGSSFLADVREKSEKEGSVISL 101 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l 101 (1170)
.|...++++|.+..++.|..++.. ++.+.+.++|++|+||||+|+.+++.+.. .|...+.-.+. +... . ...
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~---sd~~-~-~~~ 80 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIARD--GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA---SDDR-G-IDV 80 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc---cccc-c-HHH
Confidence 355667899999989999888765 33455779999999999999999987632 23221111110 1111 1 112
Q ss_pred HHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCCch-hhhhh
Q 045458 102 QKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRDKQ-LLVAH 178 (1170)
Q Consensus 102 ~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~ 178 (1170)
.++.......... . .-.++.-++|||+++.. ...+.+.......++.+++|+++.... +....
T Consensus 81 vr~~i~~~~~~~~-~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L 146 (319)
T PLN03025 81 VRNKIKMFAQKKV-T-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPI 146 (319)
T ss_pred HHHHHHHHHhccc-c-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhH
Confidence 2222222110000 0 00134568999999765 233444443344456788888775532 21111
Q ss_pred CCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHH
Q 045458 179 EVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLAL 232 (1170)
Q Consensus 179 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 232 (1170)
......+++++++.++..+.+...+-..... -..+....+++.++|..-.+
T Consensus 147 -~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~--i~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 147 -QSRCAIVRFSRLSDQEILGRLMKVVEAEKVP--YVPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred -HHhhhcccCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 1112379999999999999998877433322 22356778888888876433
No 56
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.45 E-value=4.2e-06 Score=95.64 Aligned_cols=187 Identities=14% Similarity=0.187 Sum_probs=108.7
Q ss_pred CCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHH
Q 045458 24 PETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQK 103 (1170)
Q Consensus 24 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 103 (1170)
|..-++++|++..++.+..++..+ ..+.+.|+|..|+||||+|+.+++..........++. +. .+... . .....
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~-~~-~~~~~-~-~~~~~ 86 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE-LN-ASDER-G-IDVIR 86 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE-ec-ccccc-c-hHHHH
Confidence 445577999999999999998753 3445799999999999999999987543211111221 10 01111 1 11111
Q ss_pred HHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCCch-hhhhhCC
Q 045458 104 QLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRDKQ-LLVAHEV 180 (1170)
Q Consensus 104 ~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~~~ 180 (1170)
+.+.++.... ......+-++|+|+++.. +..+.+........+.+++|+++.... +.... .
T Consensus 87 ~~i~~~~~~~---------------~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l-~ 150 (319)
T PRK00440 87 NKIKEFARTA---------------PVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPI-Q 150 (319)
T ss_pred HHHHHHHhcC---------------CCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhH-H
Confidence 1111111000 000123568999998754 234444444444456677887775432 11111 1
Q ss_pred CCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHH
Q 045458 181 DEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKV 234 (1170)
Q Consensus 181 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 234 (1170)
.....+++++++.++...++...+-.... .-..+.+..+++.++|.+--+..
T Consensus 151 sr~~~~~~~~l~~~ei~~~l~~~~~~~~~--~i~~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 151 SRCAVFRFSPLKKEAVAERLRYIAENEGI--EITDDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred HHhheeeeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 11237899999999999999887744332 12345678889999998765433
No 57
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=1.1e-05 Score=95.72 Aligned_cols=202 Identities=19% Similarity=0.186 Sum_probs=113.5
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHH
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQ 102 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 102 (1170)
.|...+++||.+...+.|..++..+. -...+.++|+.|+||||+|+.+++.+-.... .. .. ....+..-..+.
T Consensus 10 RPktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~----~~-~~-pCg~C~sC~~I~ 82 (702)
T PRK14960 10 RPRNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETG----VT-ST-PCEVCATCKAVN 82 (702)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcC----CC-CC-CCccCHHHHHHh
Confidence 35556789999999999999997542 2478899999999999999999986532110 00 00 000000000000
Q ss_pred HHHHHHHhhcCCCccccchhhHHHHHH----hhCCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCCchhhh
Q 045458 103 KQLLSNLLKLGDISIWHVEDGINIIGS----RLRQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRDKQLLV 176 (1170)
Q Consensus 103 ~~ll~~l~~~~~~~~~~~~~~~~~i~~----~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~ 176 (1170)
..-.-.+...........++..+.+.. -..+++-++|+|+++.. ...+.+...+....++.++|++|.+..-..
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp 162 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLP 162 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhh
Confidence 000000000000000011111111111 11345668999999765 345566555544456778888887654322
Q ss_pred hhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHH
Q 045458 177 AHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALK 233 (1170)
Q Consensus 177 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 233 (1170)
.........+++++++.++..+.+...+-+... ....+....|++.++|.+-.+.
T Consensus 163 ~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI--~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 163 ITVISRCLQFTLRPLAVDEITKHLGAILEKEQI--AADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 211233348999999999999999877643322 2334567788999999774443
No 58
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.44 E-value=7e-06 Score=98.46 Aligned_cols=199 Identities=16% Similarity=0.178 Sum_probs=114.6
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHH
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQ 102 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 102 (1170)
.|...+++||.+..++.|..++..+ .-.+.+.++|..|+||||+|+.+.+.+...-.. . ....+. -..-
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~~g-RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~----~-----~~PCG~-C~sC 79 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALDGG-RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGV----T-----SQPCGV-CRAC 79 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHhcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCC----C-----CCCCcc-cHHH
Confidence 3555678999999999999998754 224677899999999999999998865321000 0 000000 0000
Q ss_pred HHHHH----HHhhcCCCccccchhhHHHHHHh----hCCCeEEEEEeCCCCHH--HHHHhhcCcCCCCCCcEEEEEeCCc
Q 045458 103 KQLLS----NLLKLGDISIWHVEDGINIIGSR----LRQKKVLLIIDDVADVE--QLQSLAGKRDWFGPGSRILITTRDK 172 (1170)
Q Consensus 103 ~~ll~----~l~~~~~~~~~~~~~~~~~i~~~----L~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~ 172 (1170)
..+.. .+...........++..+.+... ..++.-++|||+++... .++.++..+....++.++|+||++.
T Consensus 80 r~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~ 159 (830)
T PRK07003 80 REIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDP 159 (830)
T ss_pred HHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 00000 00000000000111111111111 12345588899998664 3666666555446788988888876
Q ss_pred hhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCc-hHHHH
Q 045458 173 QLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLP-LALKV 234 (1170)
Q Consensus 173 ~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~ 234 (1170)
.-....-......+.++.++.++..+.+.+.+..... ....+....|++.++|.. -|+..
T Consensus 160 ~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI--~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 160 QKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI--AFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred hhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 5332222233358999999999999999887643221 223456778888988865 45544
No 59
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=1.3e-05 Score=98.19 Aligned_cols=190 Identities=19% Similarity=0.171 Sum_probs=114.8
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhcccc--Cc-eeEEEe------------
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEF--DG-SSFLAD------------ 87 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f--~~-~~~~~~------------ 87 (1170)
.|...+++||-+..++.|..++..+ .-...+.++|+.|+||||+|+.+++.+.... .. .|....
T Consensus 11 RP~tFddIIGQe~Iv~~LknaI~~~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~D 89 (944)
T PRK14949 11 RPATFEQMVGQSHVLHALTNALTQQ-RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVD 89 (944)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCce
Confidence 3555678999999999999988753 2245668999999999999999998764321 00 000000
Q ss_pred cchhhcc-CCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcE
Q 045458 88 VREKSEK-EGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSR 164 (1170)
Q Consensus 88 ~~~~~~~-~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsr 164 (1170)
+.+.... ... ....+++...+. ..-..+++-++|||+++.. +..+.|+..+.......+
T Consensus 90 viEidAas~~k-VDdIReLie~v~-----------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vr 151 (944)
T PRK14949 90 LIEVDAASRTK-VDDTRELLDNVQ-----------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVK 151 (944)
T ss_pred EEEeccccccC-HHHHHHHHHHHH-----------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeE
Confidence 0000000 000 111112211110 0112356779999999754 557777666655566778
Q ss_pred EEEEeCCchhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHH
Q 045458 165 ILITTRDKQLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALK 233 (1170)
Q Consensus 165 IIiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 233 (1170)
+|++|.+..-....-......|++++++.++..+++.+.+-... .....+.+..|++.++|.|--+.
T Consensus 152 FILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg--I~~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 152 FLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ--LPFEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred EEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 77777665422211122234899999999999999987663322 22334567889999999885433
No 60
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.43 E-value=2e-06 Score=99.54 Aligned_cols=177 Identities=16% Similarity=0.255 Sum_probs=101.7
Q ss_pred CccCccccchhhHHHHHHHHcCC-----------CCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhc
Q 045458 25 ETIKELVGIESRLEKIRFLMGTG-----------SSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSE 93 (1170)
Q Consensus 25 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 93 (1170)
...+++.|++..+++|.+.+... -...+-|.|+|++|+|||++|++++++....| +....
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~-----~~v~~---- 189 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF-----IRVVG---- 189 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCE-----Eecch----
Confidence 34467899999999998876421 12245689999999999999999999776443 21100
Q ss_pred cCCcHHHHHHHHHHHHhhcCCCccccchhhH-HHHHHhhCCCeEEEEEeCCCCHH----------------HHHHhhcCc
Q 045458 94 KEGSVISLQKQLLSNLLKLGDISIWHVEDGI-NIIGSRLRQKKVLLIIDDVADVE----------------QLQSLAGKR 156 (1170)
Q Consensus 94 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~-~~i~~~L~~k~~LlVLDdv~~~~----------------~l~~l~~~~ 156 (1170)
..+....... ..... ..++..-...+.+|+||+++... .+..+....
T Consensus 190 -----~~l~~~~~g~-----------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~l 253 (364)
T TIGR01242 190 -----SELVRKYIGE-----------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEL 253 (364)
T ss_pred -----HHHHHHhhhH-----------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHh
Confidence 1111111000 00111 11112223467899999987531 122333222
Q ss_pred CCC--CCCcEEEEEeCCchhhhhhCC---CCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCc
Q 045458 157 DWF--GPGSRILITTRDKQLLVAHEV---DEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLP 229 (1170)
Q Consensus 157 ~~~--~~gsrIIiTTR~~~v~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 229 (1170)
..+ ..+.+||.||.........-. .-...++++..+.++..++|..++.+.....+. ....+++.+.|..
T Consensus 254 d~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~---~~~~la~~t~g~s 328 (364)
T TIGR01242 254 DGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV---DLEAIAKMTEGAS 328 (364)
T ss_pred hCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC---CHHHHHHHcCCCC
Confidence 211 246788888875432222111 112379999999999999999887544322211 1355667777754
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.43 E-value=6.6e-09 Score=113.10 Aligned_cols=86 Identities=26% Similarity=0.400 Sum_probs=58.5
Q ss_pred CCCcEEEcCCCCCCCcCC--C-CCCCCCccEEEeeccCCcccc--cccccCCCCccEEEeeCCCCCCccCcc-cc--CCc
Q 045458 469 NMLKVMKVSYSQSLIKIP--D-FTGVPNLEKLYLEGCTRLREI--HPSLLLHSKLVILNLTGCTSLATLPGK-IF--MKS 540 (1170)
Q Consensus 469 ~~L~~L~Ls~~~~l~~~~--~-~~~l~~L~~L~L~~~~~l~~~--~~~i~~l~~L~~L~L~~c~~l~~lp~~-~~--l~~ 540 (1170)
..||.|.++++.....-+ . ...+||+++|.+.+|..++.. -.--..+++|++|++..|..++...-. +. +++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 466777777776444322 1 456899999999998865531 112236788999999998887765432 22 888
Q ss_pred ccEEEecCCCCCCc
Q 045458 541 VKKLVLSGCSKLKK 554 (1170)
Q Consensus 541 L~~L~L~~~~~~~~ 554 (1170)
|++|++++|.....
T Consensus 218 L~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 218 LKYLNLSWCPQISG 231 (483)
T ss_pred HHHhhhccCchhhc
Confidence 88999888875543
No 62
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.43 E-value=1.8e-07 Score=94.34 Aligned_cols=84 Identities=35% Similarity=0.472 Sum_probs=29.5
Q ss_pred CCCCCCcCEEeccCCCCCCCCCcCcc-CCCCCCCEEECcCCCCcccc--hhhhcCCCCCEeeccCccCCCcCCCCCcccc
Q 045458 771 LSGLYSLTKLDLSDCDLGEGFIPNDI-GNLRSLKVLCLSNNSFVSLP--ASISRLSKLECLNLNGCKKLQSLPPLPARMR 847 (1170)
Q Consensus 771 l~~l~~L~~L~Ls~c~l~~~~~~~~l-~~l~sL~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~ 847 (1170)
+..++.|+.|++++|.+.. +...+ ..+++|+.|++++|++..+. ..+..+++|+.|+|.+||-... + .-+
T Consensus 60 l~~L~~L~~L~L~~N~I~~--i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~----~YR 132 (175)
T PF14580_consen 60 LPGLPRLKTLDLSNNRISS--ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-K----NYR 132 (175)
T ss_dssp ----TT--EEE--SS---S---CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-T----THH
T ss_pred ccChhhhhhcccCCCCCCc--cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-h----hHH
Confidence 3345566666666666643 32223 24666777777777665433 2455677777777777664322 2 123
Q ss_pred eeeccCCcCCcccC
Q 045458 848 IASVNGCASLETLS 861 (1170)
Q Consensus 848 ~L~i~~C~~L~~l~ 861 (1170)
...+..||+|+.+.
T Consensus 133 ~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 133 LFVIYKLPSLKVLD 146 (175)
T ss_dssp HHHHHH-TT-SEET
T ss_pred HHHHHHcChhheeC
Confidence 33344455555543
No 63
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=6.7e-06 Score=95.16 Aligned_cols=200 Identities=13% Similarity=0.099 Sum_probs=112.6
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHH
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQ 102 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 102 (1170)
.|...+++||-+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+...-....-. .. .......+.
T Consensus 13 RP~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~p--Cg----~C~sC~~i~ 85 (484)
T PRK14956 13 RPQFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEP--CN----ECTSCLEIT 85 (484)
T ss_pred CCCCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccc--cC----CCcHHHHHH
Confidence 45566789999999999999887642 235688999999999999999998654321100000 00 000000000
Q ss_pred HHHHHHHhh---cCCCccccchhhHHHHHH-hhCCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCCchhhh
Q 045458 103 KQLLSNLLK---LGDISIWHVEDGINIIGS-RLRQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRDKQLLV 176 (1170)
Q Consensus 103 ~~ll~~l~~---~~~~~~~~~~~~~~~i~~-~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~ 176 (1170)
......+.. .......+..+..+.+.. ...++.-++|+|+++.. +.+++++..+........+|++|...+-..
T Consensus 86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP 165 (484)
T ss_pred ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhcc
Confidence 000000000 000001111111111111 12356678999999754 557777766654445666665665533222
Q ss_pred hhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchH
Q 045458 177 AHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLA 231 (1170)
Q Consensus 177 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 231 (1170)
..-....+.|.+.+++.++..+.+.+.+-... .....+....|++.++|.+--
T Consensus 166 ~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg--i~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 166 ETILSRCQDFIFKKVPLSVLQDYSEKLCKIEN--VQYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred HHHHhhhheeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCChHHH
Confidence 21222334799999999999999887764322 223346678899999998743
No 64
>PRK04195 replication factor C large subunit; Provisional
Probab=98.41 E-value=6.3e-06 Score=98.90 Aligned_cols=185 Identities=16% Similarity=0.219 Sum_probs=110.1
Q ss_pred CCCccCccccchhhHHHHHHHHcCC--CCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHH
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTG--SSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVIS 100 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 100 (1170)
.|...+++||.+..++++..|+..- +...+.+.|+|++|+||||+|+++++++. ++ .+.+. . +. ... ..
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~-~ieln-a---sd-~r~-~~ 79 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WE-VIELN-A---SD-QRT-AD 79 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CC-EEEEc-c---cc-ccc-HH
Confidence 3555678999999999999988642 12267899999999999999999999763 22 11111 1 11 111 12
Q ss_pred HHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH------HHHHhhcCcCCCCCCcEEEEEeCCchh
Q 045458 101 LQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVE------QLQSLAGKRDWFGPGSRILITTRDKQL 174 (1170)
Q Consensus 101 l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~------~l~~l~~~~~~~~~gsrIIiTTR~~~v 174 (1170)
...+++....... .....++-+||+|+++... .++.+..... ..+..||+|+.+..-
T Consensus 80 ~i~~~i~~~~~~~---------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~ 142 (482)
T PRK04195 80 VIERVAGEAATSG---------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYD 142 (482)
T ss_pred HHHHHHHHhhccC---------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccc
Confidence 2222222221000 0111367799999997642 2444433322 234557777755321
Q ss_pred hhh-hCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHH
Q 045458 175 LVA-HEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVL 235 (1170)
Q Consensus 175 ~~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 235 (1170)
... .-......+++++++.++....+...+...... ...+....|++.++|..-.+...
T Consensus 143 ~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~--i~~eaL~~Ia~~s~GDlR~ain~ 202 (482)
T PRK04195 143 PSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIE--CDDEALKEIAERSGGDLRSAIND 202 (482)
T ss_pred cchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 111 011222479999999999999988776433322 22466788899999876655443
No 65
>PTZ00202 tuzin; Provisional
Probab=98.41 E-value=4.9e-05 Score=85.16 Aligned_cols=182 Identities=14% Similarity=0.164 Sum_probs=111.9
Q ss_pred HHHHHHHHHhhcc-------cCCCccCccccchhhHHHHHHHHcCCC-CCeEEEEEEeCCCccHHHHHHHHHhhhccccC
Q 045458 9 IEEIVNVISSKIH-------TEPETIKELVGIESRLEKIRFLMGTGS-SDVRMIGIWGMGGLGKTTLARVVYDSMSYEFD 80 (1170)
Q Consensus 9 i~~i~~~i~~~l~-------~~~~~~~~~vGr~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~ 80 (1170)
++--|+.+.+.++ ..|+++..||||+.++++|...|...+ ...++++|.|++|+|||||++.+.....
T Consensus 236 l~~Av~tL~~~~~~~~~~~~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~---- 311 (550)
T PTZ00202 236 LKVAVSTLTQPLNPRPSTLQSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG---- 311 (550)
T ss_pred HHHHHHHhhcccCCCcccccCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----
Confidence 3445566666654 467788999999999999999997433 3457999999999999999999997654
Q ss_pred ceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhh------CCCeEEEEEeC--CCCHHHHHHh
Q 045458 81 GSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRL------RQKKVLLIIDD--VADVEQLQSL 152 (1170)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L------~~k~~LlVLDd--v~~~~~l~~l 152 (1170)
..+++.+.+. ..+++..++.+++.... ..-.+..+.|.+.+ ++++.+||+-= -.+..-...=
T Consensus 312 ~~qL~vNprg-------~eElLr~LL~ALGV~p~---~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne 381 (550)
T PTZ00202 312 MPAVFVDVRG-------TEDTLRSVVKALGVPNV---EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNE 381 (550)
T ss_pred ceEEEECCCC-------HHHHHHHHHHHcCCCCc---ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHH
Confidence 2356655541 27788888888763211 11233444444433 25677777742 2222211110
Q ss_pred hcCcCCCCCCcEEEEEeCCchhhhhh-CCCCccEEECCCCChHHHHHHHHHhh
Q 045458 153 AGKRDWFGPGSRILITTRDKQLLVAH-EVDEEHILNLDVLNNDEALQLFSMKA 204 (1170)
Q Consensus 153 ~~~~~~~~~gsrIIiTTR~~~v~~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a 204 (1170)
...+.....-|.|++----+.+.... .......|-++.++.++|.++-.+..
T Consensus 382 ~v~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 382 VVALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred HHHHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 01111113457777755444332211 12223479999999999998886543
No 66
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.40 E-value=3.8e-06 Score=86.41 Aligned_cols=180 Identities=22% Similarity=0.283 Sum_probs=98.1
Q ss_pred cCCCccCccccchhhHHHHHHHHcC---CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcH
Q 045458 22 TEPETIKELVGIESRLEKIRFLMGT---GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSV 98 (1170)
Q Consensus 22 ~~~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 98 (1170)
.-|...++|||-+.-++.+.-++.. ..+...-+.+||++|+||||||..++++....|. +.. . ...++.
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~s-g-~~i~k~--- 89 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITS-G-PAIEKA--- 89 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEE-C-CC--SC---
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---ecc-c-hhhhhH---
Confidence 4567788999999988887655542 2244677889999999999999999998876653 111 0 000111
Q ss_pred HHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH--HHHHHhhcCcCCC--------CCC------
Q 045458 99 ISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV--EQLQSLAGKRDWF--------GPG------ 162 (1170)
Q Consensus 99 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~--------~~g------ 162 (1170)
.+ .... ...++ ++-+|.+|.+... .+-+.+.+....+ +++
T Consensus 90 ~d----------------------l~~i-l~~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~ 145 (233)
T PF05496_consen 90 GD----------------------LAAI-LTNLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRI 145 (233)
T ss_dssp HH----------------------HHHH-HHT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEE
T ss_pred HH----------------------HHHH-HHhcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeec
Confidence 11 1111 11122 3447778999653 3333333332211 222
Q ss_pred -----cEEEEEeCCchhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHH
Q 045458 163 -----SRILITTRDKQLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVL 235 (1170)
Q Consensus 163 -----srIIiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 235 (1170)
+-|=.|||...+.....-.-....+++..+.+|-.+...+.+..-. .+...+.+.+|++++.|-|--..-+
T Consensus 146 ~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~--i~i~~~~~~~Ia~rsrGtPRiAnrl 221 (233)
T PF05496_consen 146 NLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN--IEIDEDAAEEIARRSRGTPRIANRL 221 (233)
T ss_dssp E----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHHH
T ss_pred cCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHhcCCChHHHHHH
Confidence 2345577775543332222222568999999999999988774333 3345578999999999999654433
No 67
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.40 E-value=3.3e-07 Score=92.47 Aligned_cols=87 Identities=22% Similarity=0.339 Sum_probs=20.0
Q ss_pred CCCCCCCCCCCceeEEEccCCChHHHhhcCC-CCCCCcEEEcCCCCCCCcCCCCCCCCCccEEEeeccCCcccccccc-c
Q 045458 436 LKSLPPNLQLDKTIEFKMLCSRIEELWKGIK-SLNMLKVMKVSYSQSLIKIPDFTGVPNLEKLYLEGCTRLREIHPSL-L 513 (1170)
Q Consensus 436 l~~lp~~~~l~~L~~L~L~~s~i~~L~~~l~-~l~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i-~ 513 (1170)
++..|...++.++++|+|.++.|..+ +.+. .+.+|+.|++++|. +..++++..+++|++|++++|. +..+...+ .
T Consensus 9 i~~~~~~~n~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l~~ 85 (175)
T PF14580_consen 9 IEQIAQYNNPVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNR-ISSISEGLDK 85 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHHH
T ss_pred cccccccccccccccccccccccccc-cchhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCC-CCccccchHH
Confidence 44444444566667777777777665 3444 46777777777776 4556667777777777777753 33333333 2
Q ss_pred CCCCccEEEeeC
Q 045458 514 LHSKLVILNLTG 525 (1170)
Q Consensus 514 ~l~~L~~L~L~~ 525 (1170)
.+++|+.|++++
T Consensus 86 ~lp~L~~L~L~~ 97 (175)
T PF14580_consen 86 NLPNLQELYLSN 97 (175)
T ss_dssp H-TT--EEE-TT
T ss_pred hCCcCCEEECcC
Confidence 355555555554
No 68
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=2.6e-05 Score=92.06 Aligned_cols=188 Identities=18% Similarity=0.174 Sum_probs=109.0
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccc----cC-----------------c
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE----FD-----------------G 81 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~----f~-----------------~ 81 (1170)
.|...+++||.+...+.|...+..+. -.+.+.++|++|+||||+|+.+++.+... +. .
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~d 87 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMD 87 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCc
Confidence 45667889999988888888876532 23568899999999999999998865321 00 0
Q ss_pred eeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH--HHHHHhhcCcCCC
Q 045458 82 SSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV--EQLQSLAGKRDWF 159 (1170)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~ 159 (1170)
...+. .+...+ +.. .+++..... ..-..+++-++|+|+++.. ++.+.+.......
T Consensus 88 v~el~----aa~~~g-id~-iR~i~~~~~-----------------~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p 144 (472)
T PRK14962 88 VIELD----AASNRG-IDE-IRKIRDAVG-----------------YRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEP 144 (472)
T ss_pred cEEEe----CcccCC-HHH-HHHHHHHHh-----------------hChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhC
Confidence 00000 000000 011 111111110 0012245679999999755 3455565554443
Q ss_pred CCCcEEEEEeCC-chhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCC-chHHHHHHH
Q 045458 160 GPGSRILITTRD-KQLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGL-PLALKVLGS 237 (1170)
Q Consensus 160 ~~gsrIIiTTR~-~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~l~~ 237 (1170)
++...+|++|.+ ..+.... ......+++.+++.++....+...+..... .-..+....|+++++|- +.|+..+..
T Consensus 145 ~~~vv~Ilattn~~kl~~~L-~SR~~vv~f~~l~~~el~~~L~~i~~~egi--~i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 145 PSHVVFVLATTNLEKVPPTI-ISRCQVIEFRNISDELIIKRLQEVAEAEGI--EIDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred CCcEEEEEEeCChHhhhHHH-hcCcEEEEECCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 445555555544 3332221 233358999999999999998887743322 22345677788877654 566666544
No 69
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.35 E-value=2.1e-06 Score=96.88 Aligned_cols=61 Identities=25% Similarity=0.573 Sum_probs=31.2
Q ss_pred CcccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCc
Q 045458 633 MEDLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVP 698 (1170)
Q Consensus 633 l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~ 698 (1170)
+.+++.|++++|.++.+|. ...+|+.|.+++|..+..+|..+ .++|+.|.+++|..+..+|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 3455555555555555551 22346666666666555555433 2355555555554444333
No 70
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.34 E-value=1.4e-05 Score=90.42 Aligned_cols=179 Identities=16% Similarity=0.189 Sum_probs=109.3
Q ss_pred CccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccc------cCceeEEEecchhhccCCcHHHH
Q 045458 28 KELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE------FDGSSFLADVREKSEKEGSVISL 101 (1170)
Q Consensus 28 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~~~~l 101 (1170)
++++|-+...+.+...+..+ .-.+...++|+.|+||||+|+.+++.+-.. .+...|.. . ......+..
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-~---~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-I---NKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-c---cCCCCCHHH-
Confidence 56889999999999998753 234677899999999999999999865322 12112211 0 001111111
Q ss_pred HHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCC--CHHHHHHhhcCcCCCCCCcEEEEEeCCchhhhhhC
Q 045458 102 QKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVA--DVEQLQSLAGKRDWFGPGSRILITTRDKQLLVAHE 179 (1170)
Q Consensus 102 ~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~--~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~ 179 (1170)
.+++...+.. .-..+++-++|+|+++ +...++.+...+....+++.+|++|.+.......-
T Consensus 78 ir~~~~~~~~-----------------~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI 140 (313)
T PRK05564 78 IRNIIEEVNK-----------------KPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTI 140 (313)
T ss_pred HHHHHHHHhc-----------------CcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH
Confidence 1122222110 0112344466667664 45567777777766678899999887654322111
Q ss_pred CCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHH
Q 045458 180 VDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVL 235 (1170)
Q Consensus 180 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 235 (1170)
....+.+++.+++.++..+++...+. . ...+.+..++.+++|.|..+...
T Consensus 141 ~SRc~~~~~~~~~~~~~~~~l~~~~~--~----~~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 141 KSRCQIYKLNRLSKEEIEKFISYKYN--D----IKEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred HhhceeeeCCCcCHHHHHHHHHHHhc--C----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 22234899999999999888876541 1 11234677899999998755433
No 71
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.34 E-value=2e-05 Score=97.30 Aligned_cols=174 Identities=25% Similarity=0.336 Sum_probs=102.2
Q ss_pred CCCccCccccchhhHH---HHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHH
Q 045458 23 EPETIKELVGIESRLE---KIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVI 99 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~---~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 99 (1170)
.|...+++||.+..+. .+.+++.. +....+.++|++|+||||+|+.+++.....|. .+. ... .+. .
T Consensus 23 RP~tldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~ln---a~~--~~i-~ 91 (725)
T PRK13341 23 RPRTLEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLN---AVL--AGV-K 91 (725)
T ss_pred CCCcHHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eeh---hhh--hhh-H
Confidence 3556678999998774 56666654 44567789999999999999999987655441 111 000 000 1
Q ss_pred HHHHHHHHHHhhcCCCccccchhhHHHHHHhh--CCCeEEEEEeCCCC--HHHHHHhhcCcCCCCCCcEEEEE--eCCch
Q 045458 100 SLQKQLLSNLLKLGDISIWHVEDGINIIGSRL--RQKKVLLIIDDVAD--VEQLQSLAGKRDWFGPGSRILIT--TRDKQ 173 (1170)
Q Consensus 100 ~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L--~~k~~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIIiT--TR~~~ 173 (1170)
.+ ++.+ ..+.+.+ .+++.+|||||++. ..+.+.+.... ..|..++|+ |.+..
T Consensus 92 di-r~~i------------------~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~ 149 (725)
T PRK13341 92 DL-RAEV------------------DRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPY 149 (725)
T ss_pred HH-HHHH------------------HHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChH
Confidence 11 1111 1111111 24677999999964 45566666543 245555553 33321
Q ss_pred --hhhhhCCCCccEEECCCCChHHHHHHHHHhhcCC-----CCCChhhHHHHHHHHHHhCCCch
Q 045458 174 --LLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKT-----HQPVGEYVELSERVLEYAGGLPL 230 (1170)
Q Consensus 174 --v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~-----~~~~~~~~~~~~~i~~~~~GlPL 230 (1170)
+.... ......+++++++.++..+++.+.+-.. .....-..+....+++++.|..-
T Consensus 150 ~~l~~aL-~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 150 FEVNKAL-VSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hhhhhHh-hccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 11111 1123479999999999999998765310 11122334566788888888644
No 72
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1.1e-05 Score=96.03 Aligned_cols=185 Identities=18% Similarity=0.216 Sum_probs=110.5
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccC---------------------c
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFD---------------------G 81 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~---------------------~ 81 (1170)
.|...+++||-+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+..... .
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~d 89 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFID 89 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCc
Confidence 3555678999999999999998753 23456789999999999999999986532110 1
Q ss_pred eeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHH-hhCCCeEEEEEeCCCCH--HHHHHhhcCcCC
Q 045458 82 SSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGS-RLRQKKVLLIIDDVADV--EQLQSLAGKRDW 158 (1170)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~-~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~ 158 (1170)
.+.+. .....+ .+-.++++. .+.. -..+++-++|+|+++.. ...+.+...+..
T Consensus 90 lieid----aas~~g--vd~ir~ii~------------------~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEe 145 (546)
T PRK14957 90 LIEID----AASRTG--VEETKEILD------------------NIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEE 145 (546)
T ss_pred eEEee----cccccC--HHHHHHHHH------------------HHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhc
Confidence 11110 000000 011111111 1111 12346669999999754 446666665554
Q ss_pred CCCCcEEEEEeCCch-hhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCch-HHHHH
Q 045458 159 FGPGSRILITTRDKQ-LLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPL-ALKVL 235 (1170)
Q Consensus 159 ~~~gsrIIiTTR~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~l 235 (1170)
....+.+|++|.+.. +... -......+++++++.++..+.+...+-... .....+....|++.++|.+- |+..+
T Consensus 146 pp~~v~fIL~Ttd~~kil~t-I~SRc~~~~f~~Ls~~eI~~~L~~il~~eg--i~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 146 PPEYVKFILATTDYHKIPVT-ILSRCIQLHLKHISQADIKDQLKIILAKEN--INSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred CCCCceEEEEECChhhhhhh-HHHheeeEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 456677776665443 3322 122234899999999999888877553322 22334556778888888653 44443
No 73
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.32 E-value=2.2e-06 Score=89.21 Aligned_cols=50 Identities=32% Similarity=0.497 Sum_probs=35.5
Q ss_pred ccccchhhHHHHHHHHcC-CCCCeEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 29 ELVGIESRLEKIRFLMGT-GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 29 ~~vGr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
.||||+++++++...+.. .....+.+.|+|.+|+|||+|+++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 489999999999999942 23457999999999999999999999988776
No 74
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=7.1e-06 Score=97.20 Aligned_cols=203 Identities=14% Similarity=0.147 Sum_probs=113.9
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHH
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQ 102 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 102 (1170)
.|...+++||-+.-++.|.+++..+ .-.+.+.++|..|+||||+|+.+.+.+-..-.... ..+ .....+. -..-
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~g-RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~--~g~--~~~PCG~-C~sC 84 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQQ-RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGE--GGI--TAQPCGQ-CRAC 84 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHhC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccc--ccC--CCCCCcc-cHHH
Confidence 3555678999999999999999754 23467789999999999999999986532100000 000 0000000 0000
Q ss_pred HHHHH----HHhhcCCCccccchhhHHHHHHh----hCCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCCc
Q 045458 103 KQLLS----NLLKLGDISIWHVEDGINIIGSR----LRQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRDK 172 (1170)
Q Consensus 103 ~~ll~----~l~~~~~~~~~~~~~~~~~i~~~----L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~ 172 (1170)
..+.. .+..........+++..+.+... ..++.-++|||+++.. ...+.|+..+..-..++++|++|.+.
T Consensus 85 ~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep 164 (700)
T PRK12323 85 TEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDP 164 (700)
T ss_pred HHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCCh
Confidence 00000 00000000001112222222111 1345668999999765 45677776665555677777776655
Q ss_pred hhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHH
Q 045458 173 QLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALK 233 (1170)
Q Consensus 173 ~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 233 (1170)
+-....-......+.++.++.++..+.+.+.+..... +...+....|++.++|.|.-..
T Consensus 165 ~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi--~~d~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 165 QKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI--AHEVNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred HhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 4222111222347999999999999998876633221 2223456788999999886443
No 75
>PF13173 AAA_14: AAA domain
Probab=98.31 E-value=1.7e-06 Score=83.92 Aligned_cols=121 Identities=18% Similarity=0.224 Sum_probs=76.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRL 131 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 131 (1170)
++++|.|+.|+|||||+++++++.. .-...+++. ...... . .. . .. +..+.+.+..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~~~~--------~-~~----~--------~~-~~~~~~~~~~ 58 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDDPRD--------R-RL----A--------DP-DLLEYFLELI 58 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCCHHH--------H-HH----h--------hh-hhHHHHHHhh
Confidence 6899999999999999999998765 222344443 211110 0 00 0 00 0122333333
Q ss_pred CCCeEEEEEeCCCCHHHHHHhhcCcCCCCCCcEEEEEeCCchhhhhhC----CCCccEEECCCCChHHH
Q 045458 132 RQKKVLLIIDDVADVEQLQSLAGKRDWFGPGSRILITTRDKQLLVAHE----VDEEHILNLDVLNNDEA 196 (1170)
Q Consensus 132 ~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~----~~~~~~~~l~~L~~~ea 196 (1170)
..++.+|+||++....+|......+...++..+|++|+.......... ......+++.+|+-.|-
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 447789999999888887776665554556789999999877653311 22334689999988763
No 76
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=7.4e-06 Score=92.96 Aligned_cols=200 Identities=17% Similarity=0.167 Sum_probs=115.1
Q ss_pred cCCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccc----cCceeEEEecchhhccCCc
Q 045458 22 TEPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE----FDGSSFLADVREKSEKEGS 97 (1170)
Q Consensus 22 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~----f~~~~~~~~~~~~~~~~~~ 97 (1170)
..|.....++|-+...+.+...+..+ .-...+.|+|+.|+||||+|+.+++.+-.. +...... ...+.
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~-------~~~~~ 88 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREG-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA-------DPDPA 88 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcC-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC-------CCCCC
Confidence 45666788999999999999998764 234678999999999999999999876431 1111000 00000
Q ss_pred HHHHHHHHHHH-------Hhh---cCC---CccccchhhHHHHHHhh-----CCCeEEEEEeCCCCH--HHHHHhhcCcC
Q 045458 98 VISLQKQLLSN-------LLK---LGD---ISIWHVEDGINIIGSRL-----RQKKVLLIIDDVADV--EQLQSLAGKRD 157 (1170)
Q Consensus 98 ~~~l~~~ll~~-------l~~---~~~---~~~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~ 157 (1170)
......+... +.. .+. ...-.+++ +..+.+.+ .+++-++|+|+++.. ...+.+...+.
T Consensus 89 -c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LE 166 (351)
T PRK09112 89 -SPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLE 166 (351)
T ss_pred -CHHHHHHHcCCCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHh
Confidence 0111111111 000 000 00011222 22333333 246678999999754 33455554444
Q ss_pred CCCCCcEEEEEeCCc-hhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHHH
Q 045458 158 WFGPGSRILITTRDK-QLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVLG 236 (1170)
Q Consensus 158 ~~~~gsrIIiTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~ 236 (1170)
...++..+|++|... .+.... ......+++.+++.++..+++...+.... ...+.+..+++.++|.|.....+.
T Consensus 167 Epp~~~~fiLit~~~~~llptI-rSRc~~i~l~pl~~~~~~~~L~~~~~~~~----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 167 EPPARALFILISHSSGRLLPTI-RSRCQPISLKPLDDDELKKALSHLGSSQG----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred cCCCCceEEEEECChhhccHHH-HhhccEEEecCCCHHHHHHHHHHhhcccC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 334555555555443 333222 22335899999999999999987442111 223457789999999998665543
No 77
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=7.6e-06 Score=98.19 Aligned_cols=203 Identities=15% Similarity=0.122 Sum_probs=110.6
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHH
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQ 102 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 102 (1170)
.|...+++||.+..++.|..++..+ .-.+.+.++|..|+||||+|+.+++.+-..-... ... .. .......+.
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~~-rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~-~~p-Cg----~C~sCr~i~ 83 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDEG-RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQH-GEP-CG----VCQSCTQID 83 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC-CCC-Cc----ccHHHHHHh
Confidence 3556678999999999999998863 2246789999999999999999988643221000 000 00 000000000
Q ss_pred HHHHHHHhhcCCCccccchhhHHHHHHh----hCCCeEEEEEeCCCCHH--HHHHhhcCcCCCCCCcEEEEEeCCchhhh
Q 045458 103 KQLLSNLLKLGDISIWHVEDGINIIGSR----LRQKKVLLIIDDVADVE--QLQSLAGKRDWFGPGSRILITTRDKQLLV 176 (1170)
Q Consensus 103 ~~ll~~l~~~~~~~~~~~~~~~~~i~~~----L~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~~v~~ 176 (1170)
..-...+...........++..+.+... ..+++-++|+|+++... ..+.++..+......+++|++|.+..-..
T Consensus 84 ~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~ 163 (709)
T PRK08691 84 AGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVP 163 (709)
T ss_pred ccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccc
Confidence 0000000000000000111111111110 12456689999997653 24445444433345677887776654211
Q ss_pred hhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHH
Q 045458 177 AHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKV 234 (1170)
Q Consensus 177 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 234 (1170)
.........++++.++.++..+.+.+.+-.... ....+.+..|++.++|.+.-+..
T Consensus 164 ~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi--~id~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 164 VTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI--AYEPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred hHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHhCCCHHHHHH
Confidence 111122236888999999999999877643322 22345678899999998754433
No 78
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.30 E-value=1e-05 Score=93.90 Aligned_cols=187 Identities=14% Similarity=0.151 Sum_probs=112.8
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccc----cCc-----------------
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE----FDG----------------- 81 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~----f~~----------------- 81 (1170)
.|...+++||.+..++.|.+++..+. -.+.+.++|++|+||||+|+.++..+... +..
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~ 87 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD 87 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 45566789999999999999887532 34678899999999999999999875422 110
Q ss_pred eeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH--HHHHHhhcCcCCC
Q 045458 82 SSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV--EQLQSLAGKRDWF 159 (1170)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~ 159 (1170)
..++.. . .... ....+++...+.. .-+.+++-++|+|+++.. .....+.......
T Consensus 88 ~~~~~~----~-~~~~-~~~~~~l~~~~~~-----------------~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~ 144 (355)
T TIGR02397 88 VIEIDA----A-SNNG-VDDIREILDNVKY-----------------APSSGKYKVYIIDEVHMLSKSAFNALLKTLEEP 144 (355)
T ss_pred EEEeec----c-ccCC-HHHHHHHHHHHhc-----------------CcccCCceEEEEeChhhcCHHHHHHHHHHHhCC
Confidence 011100 0 0000 1111122221110 001234558889998755 4455555555444
Q ss_pred CCCcEEEEEeCCch-hhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHHH
Q 045458 160 GPGSRILITTRDKQ-LLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVLG 236 (1170)
Q Consensus 160 ~~gsrIIiTTR~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~ 236 (1170)
.+.+.+|++|.+.. +.... ......+++++++.++..+++...+-..... ...+.+..+++.++|.|..+....
T Consensus 145 ~~~~~lIl~~~~~~~l~~~l-~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~--i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 145 PEHVVFILATTEPHKIPATI-LSRCQRFDFKRIPLEDIVERLKKILDKEGIK--IEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred ccceeEEEEeCCHHHHHHHH-HhheeEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCChHHHHHHH
Confidence 56677777775544 22221 1122378999999999999998877433221 223667888999999987665544
No 79
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.30 E-value=1.7e-07 Score=100.23 Aligned_cols=225 Identities=21% Similarity=0.198 Sum_probs=127.2
Q ss_pred hhhccCCCccEEeecCcccC--------CchhcccCCceEEEcCCCCC----CCCCCCCCCCceeEEEccCCChHHHhhc
Q 045458 397 KAFSKMTNLRLLGICNLKLP--------EGLECLSNKLRLLDWPGYPL----KSLPPNLQLDKTIEFKMLCSRIEELWKG 464 (1170)
Q Consensus 397 ~~f~~~~~Lr~L~l~~~~l~--------~~~~~l~~~Lr~L~l~~~~l----~~lp~~~~l~~L~~L~L~~s~i~~L~~~ 464 (1170)
.....|..+..++++++.+. ..+...+ +||..+|+..-. ..+|. .+..+.+.
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~-~L~~v~~sd~ftGR~~~Ei~e---------------~L~~l~~a 87 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKK-ELREVNLSDMFTGRLKDEIPE---------------ALKMLSKA 87 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcc-cceeeehHhhhcCCcHHHHHH---------------HHHHHHHH
Confidence 34556677777777777643 2233333 566666665321 12221 12334566
Q ss_pred CCCCCCCcEEEcCCCCCCCcCC-C----CCCCCCccEEEeeccCCcccccccccCCCCccEEEeeCCCCCCccCccccCC
Q 045458 465 IKSLNMLKVMKVSYSQSLIKIP-D----FTGVPNLEKLYLEGCTRLREIHPSLLLHSKLVILNLTGCTSLATLPGKIFMK 539 (1170)
Q Consensus 465 l~~l~~L~~L~Ls~~~~l~~~~-~----~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~ 539 (1170)
+..+++|+.|+||+|.....-+ . ++++..|++|.|.+|..-..--..++. -|..|. .++. .+ .-+
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~kk---~~---~~~ 157 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VNKK---AA---SKP 157 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HHhc---cC---CCc
Confidence 6778899999999998654432 2 567888999999888532211111110 000000 0000 00 134
Q ss_pred cccEEEecCCCCCC----ccccccCCCCCCcEEEecCccCC-----ccCcchhcCCCCCEEeccCCCCCCc----Ccccc
Q 045458 540 SVKKLVLSGCSKLK----KFPKIVGNMECLSKLLLDGTAIG-----ELPLSIELLSKLVSLDLNNCKNFKN----LPVTI 606 (1170)
Q Consensus 540 ~L~~L~L~~~~~~~----~l~~~l~~l~~L~~L~L~~~~i~-----~l~~~i~~l~~L~~L~L~~~~~l~~----lp~~l 606 (1170)
.|+.+..++|..-. .+...+...+.|+.+.+..|.|. -+...+..+++|+.|||++|..... +...+
T Consensus 158 ~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL 237 (382)
T KOG1909|consen 158 KLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL 237 (382)
T ss_pred ceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh
Confidence 55666655554322 23445566677888888888773 2345678888888888888875533 44566
Q ss_pred CCCCcccEEEeeCCCCCCCcc----hh-hcCCcccCeEeccCcCCC
Q 045458 607 SSLKCLRSLVLSGCSKLKKFP----EI-VESMEDLSELFLDGTSIT 647 (1170)
Q Consensus 607 ~~l~~L~~L~L~~~~~~~~~p----~~-~~~l~~L~~L~l~~~~l~ 647 (1170)
+.+++|+.|++++|..-..-. +. -...++|+.|.+.+|.++
T Consensus 238 ~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 238 SSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred cccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 777888888888876544321 11 123455666666666554
No 80
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.29 E-value=2.2e-06 Score=96.74 Aligned_cols=157 Identities=18% Similarity=0.333 Sum_probs=100.4
Q ss_pred CCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCc-cCCCCCccccCCCCCcEEEecCCCCCCCCCCcccCcccccc
Q 045458 678 NGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGT-AIRQPPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLI 756 (1170)
Q Consensus 678 ~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~-~i~~lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~ 756 (1170)
..+.+++.|++++| .+..+|. -.++|+.|.+++| .++.+|..+ .++|++|.+++|....
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-------------- 108 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-------------- 108 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc--------------
Confidence 34688999999998 6777773 2457999999874 456666544 4689999999885321
Q ss_pred cccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCccCC-CCCCCEEECcCCCCc---ccchhhhcC-CCCCEeecc
Q 045458 757 KRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGN-LRSLKVLCLSNNSFV---SLPASISRL-SKLECLNLN 831 (1170)
Q Consensus 757 ~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~-l~sL~~L~Ls~n~l~---~lp~~i~~l-~~L~~L~L~ 831 (1170)
.+|. +|+.|+++++.... +.. .++|+.|.+.+++.. .+|. .+ ++|++|+++
T Consensus 109 ---------sLP~------sLe~L~L~~n~~~~------L~~LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is 164 (426)
T PRK15386 109 ---------GLPE------SVRSLEIKGSATDS------IKNVPNGLTSLSINSYNPENQARIDN---LISPSLKTLSLT 164 (426)
T ss_pred ---------cccc------ccceEEeCCCCCcc------cccCcchHhheecccccccccccccc---ccCCcccEEEec
Confidence 2332 47777777654321 122 246788888654321 2221 22 579999999
Q ss_pred CccCCCcCCCCCcccceeeccCC--cCCcccCCcccccccccceeeccCcccc
Q 045458 832 GCKKLQSLPPLPARMRIASVNGC--ASLETLSDPLELNKLKDFEIQCMDCVKL 882 (1170)
Q Consensus 832 ~c~~L~~lp~lp~sL~~L~i~~C--~~L~~l~~~~~~~~L~~l~i~~~~c~~l 882 (1170)
+|..+..-+.+|.+|+.|.+..+ .+++.... .++ ..+.+.+.+|.++
T Consensus 165 ~c~~i~LP~~LP~SLk~L~ls~n~~~sLeI~~~--sLP--~nl~L~f~n~lkL 213 (426)
T PRK15386 165 GCSNIILPEKLPESLQSITLHIEQKTTWNISFE--GFP--DGLDIDLQNSVLL 213 (426)
T ss_pred CCCcccCcccccccCcEEEecccccccccCccc--ccc--cccEechhhhccc
Confidence 99977644459999999998764 34333221 122 2226677888776
No 81
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=2.7e-05 Score=88.73 Aligned_cols=251 Identities=17% Similarity=0.197 Sum_probs=148.3
Q ss_pred cCCCccCccccchhhHHHHHHHHcCC--CCCeEEEEEEeCCCccHHHHHHHHHhhhccccCce--eEEEecchhhccCCc
Q 045458 22 TEPETIKELVGIESRLEKIRFLMGTG--SSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGS--SFLADVREKSEKEGS 97 (1170)
Q Consensus 22 ~~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~--~~~~~~~~~~~~~~~ 97 (1170)
.+...|+.+.+||.+++++...|... +....-+.|+|.+|.|||+.++.+++++....... +++. .... ..
T Consensus 11 ~~~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN-c~~~----~t 85 (366)
T COG1474 11 LEDYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN-CLEL----RT 85 (366)
T ss_pred CCCCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe-eeeC----CC
Confidence 45666788999999999998776542 12233489999999999999999999887664443 4444 3332 23
Q ss_pred HHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhC--CCeEEEEEeCCCCHH-----HHHHhhcCcCCCCCCcE--EEEE
Q 045458 98 VISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLR--QKKVLLIIDDVADVE-----QLQSLAGKRDWFGPGSR--ILIT 168 (1170)
Q Consensus 98 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~--~k~~LlVLDdv~~~~-----~l~~l~~~~~~~~~gsr--IIiT 168 (1170)
..++..+++.++.. .....+...+..+.+.+.+. ++.+++|||+++... .+-.+....... .++ ||..
T Consensus 86 ~~~i~~~i~~~~~~-~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i 162 (366)
T COG1474 86 PYQVLSKILNKLGK-VPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAV 162 (366)
T ss_pred HHHHHHHHHHHcCC-CCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEE
Confidence 36777777777752 22223344555666666665 488999999997543 334444333322 444 3444
Q ss_pred eCCchhhhhhC-----CCCccEEECCCCChHHHHHHHHHhh---cCCCCCChhhHHHHHHHHHHhCC-CchHHHHHHHh-
Q 045458 169 TRDKQLLVAHE-----VDEEHILNLDVLNNDEALQLFSMKA---FKTHQPVGEYVELSERVLEYAGG-LPLALKVLGSF- 238 (1170)
Q Consensus 169 TR~~~v~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~~~~~i~~~~~G-lPLal~~l~~~- 238 (1170)
+-+........ .-....+..++.+.+|-.+.+..++ |......++..+++..++.+.+| .-.|+.++-.+
T Consensus 163 ~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~ 242 (366)
T COG1474 163 SNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAG 242 (366)
T ss_pred eccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence 44443221111 1112257899999999999998876 33444455555666666666665 34455443322
Q ss_pred -hcCC------CHHHHHHHHHHhhcCCCchHHHHHHhhccCCChhhhhHhhhhccc
Q 045458 239 -LIGR------TADLWRSALERLKRDPSYKIMSILQISFDGLQGSEKKIFLDVACF 287 (1170)
Q Consensus 239 -L~~~------~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f 287 (1170)
++.+ +.+.-..+.+.. -.....-....|+.++|-.+..++..
T Consensus 243 eiAe~~~~~~v~~~~v~~a~~~~-------~~~~~~~~~~~L~~~~ki~L~~i~~~ 291 (366)
T COG1474 243 EIAEREGSRKVSEDHVREAQEEI-------ERDVLEEVLKTLPLHQKIVLLAIVEL 291 (366)
T ss_pred HHHHhhCCCCcCHHHHHHHHHHh-------hHHHHHHHHHcCCHhHHHHHHHHHHh
Confidence 2211 222222221111 12233444678888888777665544
No 82
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=1.7e-05 Score=95.85 Aligned_cols=199 Identities=17% Similarity=0.137 Sum_probs=113.1
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHH
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQ 102 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 102 (1170)
.|...+++||-+..++.|...+..+. -...+.++|..|+||||+|+.+++.+-..... . ...++. -..-
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~----~-----~~pCg~-C~~C 79 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGI----T-----ATPCGE-CDNC 79 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCC----C-----CCCCCC-CHHH
Confidence 35566889999999999999987642 24567899999999999999998865332100 0 000000 0000
Q ss_pred HHHHHH-------HhhcCCCccccchhhHHHHHH-hhCCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCCc
Q 045458 103 KQLLSN-------LLKLGDISIWHVEDGINIIGS-RLRQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRDK 172 (1170)
Q Consensus 103 ~~ll~~-------l~~~~~~~~~~~~~~~~~i~~-~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~ 172 (1170)
.++... +.........+..+.++.+.. -..+++-++|||+++.. ...+.|+..+....+..++|++|.+.
T Consensus 80 ~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~ 159 (647)
T PRK07994 80 REIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 159 (647)
T ss_pred HHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCc
Confidence 000000 000000000111111111111 12356678999999754 45666665555445677777766665
Q ss_pred hhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHH
Q 045458 173 QLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKV 234 (1170)
Q Consensus 173 ~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 234 (1170)
.-....-......|.+++++.++..+.+.+.+-.... ....+....|++.++|.+--...
T Consensus 160 ~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i--~~e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 160 QKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI--PFEPRALQLLARAADGSMRDALS 219 (647)
T ss_pred cccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 4222111222358999999999999999876532221 22335567889999997764433
No 83
>PF14516 AAA_35: AAA-like domain
Probab=98.26 E-value=0.00031 Score=79.86 Aligned_cols=211 Identities=13% Similarity=0.148 Sum_probs=119.3
Q ss_pred cCCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhc-cCCcHHH
Q 045458 22 TEPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSE-KEGSVIS 100 (1170)
Q Consensus 22 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~ 100 (1170)
..|...+.+|.|...-+++.+.+... -..+.|.|+-.+|||+|...+.+..+.+--.++++ ++..... .......
T Consensus 5 ~~~~~~~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~i-d~~~~~~~~~~~~~~ 80 (331)
T PF14516_consen 5 PLPLDSPFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYI-DLQQLGSAIFSDLEQ 80 (331)
T ss_pred CCCCCCCcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEE-EeecCCCcccCCHHH
Confidence 35667788999995555566555432 25899999999999999999998876542223333 3444322 1222244
Q ss_pred HHHHHHHHHhhcCCCc----------cccchhhHHHHHHhh---CCCeEEEEEeCCCCHHH----HHHhhcCcC-CCC--
Q 045458 101 LQKQLLSNLLKLGDIS----------IWHVEDGINIIGSRL---RQKKVLLIIDDVADVEQ----LQSLAGKRD-WFG-- 160 (1170)
Q Consensus 101 l~~~ll~~l~~~~~~~----------~~~~~~~~~~i~~~L---~~k~~LlVLDdv~~~~~----l~~l~~~~~-~~~-- 160 (1170)
..+.+...+...-+.. ..........+.+.+ .+++++|+||+||..-. ...+.+.++ |..
T Consensus 81 f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~ 160 (331)
T PF14516_consen 81 FLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQR 160 (331)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhc
Confidence 4444444443221111 111122233344432 25899999999975421 111111110 110
Q ss_pred -----CCcEEEEEeCCch--hhhhh---CCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCch
Q 045458 161 -----PGSRILITTRDKQ--LLVAH---EVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPL 230 (1170)
Q Consensus 161 -----~gsrIIiTTR~~~--v~~~~---~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 230 (1170)
-..-.+|..+... ..... .......+++++++.+|+.+|...+... ......+++...++|+|-
T Consensus 161 ~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~------~~~~~~~~l~~~tgGhP~ 234 (331)
T PF14516_consen 161 KNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE------FSQEQLEQLMDWTGGHPY 234 (331)
T ss_pred ccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc------CCHHHHHHHHHHHCCCHH
Confidence 0111122222111 11000 0122247999999999999999876422 112238899999999999
Q ss_pred HHHHHHHhhcCC
Q 045458 231 ALKVLGSFLIGR 242 (1170)
Q Consensus 231 al~~l~~~L~~~ 242 (1170)
-+..++..+...
T Consensus 235 Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 235 LVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHc
Confidence 999999988654
No 84
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.25 E-value=7.5e-06 Score=81.44 Aligned_cols=123 Identities=19% Similarity=0.197 Sum_probs=70.3
Q ss_pred ccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHh
Q 045458 31 VGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLL 110 (1170)
Q Consensus 31 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 110 (1170)
+|++..+.++...+... ..+.+.|+|.+|+||||+|+.+++.+...-...+++. ........ ...... ...
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~~~~~----~~~~~~-~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASDLLEGL----VVAELF-GHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhhhhhhh----HHHHHh-hhh-
Confidence 47888999998888653 3467889999999999999999998753322233332 22211110 000000 000
Q ss_pred hcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH-----HHHHHhhcCcCCC---CCCcEEEEEeCCch
Q 045458 111 KLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV-----EQLQSLAGKRDWF---GPGSRILITTRDKQ 173 (1170)
Q Consensus 111 ~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~-----~~l~~l~~~~~~~---~~gsrIIiTTR~~~ 173 (1170)
............++.++|+||++.. ..+.......... ..+.+||+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223456789999999854 2233333322221 36788999888754
No 85
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=1.2e-05 Score=93.80 Aligned_cols=203 Identities=15% Similarity=0.170 Sum_probs=111.4
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccc--cCceeEEEecchhhccCCcHHH
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE--FDGSSFLADVREKSEKEGSVIS 100 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~ 100 (1170)
.|...++++|-+...+.|.+++..+ .-...+.++|+.|+||||+|+.+++.+... .+...|............
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~---- 85 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRMG-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECE---- 85 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHhC-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCH----
Confidence 4556788999999999999988753 223568899999999999999999876432 111111110000000000
Q ss_pred HHHHHHHH----HhhcCCCccccchhhHHHHHHhh-----CCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEe
Q 045458 101 LQKQLLSN----LLKLGDISIWHVEDGINIIGSRL-----RQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITT 169 (1170)
Q Consensus 101 l~~~ll~~----l~~~~~~~~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTT 169 (1170)
.-..+... +...........++.. .+.+.+ .+++-++|+|+++.. ..++.+...+....+.+.+|++|
T Consensus 86 ~c~~~~~~~~~n~~~~~~~~~~~id~Ir-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t 164 (397)
T PRK14955 86 SCRDFDAGTSLNISEFDAASNNSVDDIR-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFAT 164 (397)
T ss_pred HHHHHhcCCCCCeEeecccccCCHHHHH-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 00000000 0000000000111111 122222 235568899999754 35666655555445677766665
Q ss_pred CC-chhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHH
Q 045458 170 RD-KQLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKV 234 (1170)
Q Consensus 170 R~-~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 234 (1170)
.. ..+.... ......+++.+++.++..+.+...+-... ..-..+.+..+++.++|.+--+..
T Consensus 165 ~~~~kl~~tl-~sR~~~v~f~~l~~~ei~~~l~~~~~~~g--~~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 165 TELHKIPATI-ASRCQRFNFKRIPLEEIQQQLQGICEAEG--ISVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred CChHHhHHHH-HHHHHHhhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 43 3332221 11123789999999999988887663222 223346788899999997754433
No 86
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.25 E-value=1.9e-05 Score=91.83 Aligned_cols=174 Identities=18% Similarity=0.294 Sum_probs=97.8
Q ss_pred ccCccccchhhHHHHHHHHcC-----------CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhcc
Q 045458 26 TIKELVGIESRLEKIRFLMGT-----------GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEK 94 (1170)
Q Consensus 26 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 94 (1170)
..++++|++..++++.+.+.. +-...+-|.++|++|+|||++|++++++.... |+....
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~-----~i~v~~----- 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-----FIRVVG----- 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC-----EEEeeh-----
Confidence 346788999999999886632 11335678999999999999999999876533 222100
Q ss_pred CCcHHHHHHHHHHHHhhcCCCccccchhhH-HHHHHhhCCCeEEEEEeCCCCHH-------------H---HHHhhcCcC
Q 045458 95 EGSVISLQKQLLSNLLKLGDISIWHVEDGI-NIIGSRLRQKKVLLIIDDVADVE-------------Q---LQSLAGKRD 157 (1170)
Q Consensus 95 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~-~~i~~~L~~k~~LlVLDdv~~~~-------------~---l~~l~~~~~ 157 (1170)
..+ .....+ ...... ..+...-...+.+|+|||++... . +..+.....
T Consensus 199 ----~~l----~~~~~g-------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld 263 (389)
T PRK03992 199 ----SEL----VQKFIG-------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMD 263 (389)
T ss_pred ----HHH----hHhhcc-------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcc
Confidence 111 110000 000111 11122223467899999997541 1 222322222
Q ss_pred CC--CCCcEEEEEeCCchhhhhhCC---CCccEEECCCCChHHHHHHHHHhhcCCCCCC-hhhHHHHHHHHHHhCCC
Q 045458 158 WF--GPGSRILITTRDKQLLVAHEV---DEEHILNLDVLNNDEALQLFSMKAFKTHQPV-GEYVELSERVLEYAGGL 228 (1170)
Q Consensus 158 ~~--~~gsrIIiTTR~~~v~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~Gl 228 (1170)
.+ ..+.+||.||.........-. .-...++++..+.++..++|..++.+..... .. ...+++.+.|.
T Consensus 264 ~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 264 GFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGA 336 (389)
T ss_pred ccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCC
Confidence 11 235678888876443222111 1123799999999999999998874433221 12 34455566654
No 87
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=3.1e-05 Score=91.67 Aligned_cols=195 Identities=17% Similarity=0.172 Sum_probs=111.1
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccC--c-----eeEEE-ecchhhcc
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFD--G-----SSFLA-DVREKSEK 94 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~--~-----~~~~~-~~~~~~~~ 94 (1170)
.|....++||-+.-++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-..-. . .|... ..+.....
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~ 94 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNH 94 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcC
Confidence 3555678999999999998877653 23467889999999999999999987532210 0 00000 00000000
Q ss_pred -CCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHh----hCCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEE
Q 045458 95 -EGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSR----LRQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILI 167 (1170)
Q Consensus 95 -~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~----L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIi 167 (1170)
+..+. .+..... ...++..+.+... +.+++-++|+|+++.. ..++.+...+....+.+.+|+
T Consensus 95 ~h~Dv~--------eidaas~---~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~ 163 (507)
T PRK06645 95 NHPDII--------EIDAASK---TSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIF 163 (507)
T ss_pred CCCcEE--------EeeccCC---CCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEE
Confidence 00000 0000000 0111111111111 2346678999999864 456677655554456667665
Q ss_pred Ee-CCchhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHH
Q 045458 168 TT-RDKQLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLAL 232 (1170)
Q Consensus 168 TT-R~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 232 (1170)
+| +...+..... .....+++.+++.++..+.+...+-.... ....+....|++.++|.+--+
T Consensus 164 aTte~~kI~~tI~-SRc~~~ef~~ls~~el~~~L~~i~~~egi--~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 164 ATTEVQKIPATII-SRCQRYDLRRLSFEEIFKLLEYITKQENL--KTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred EeCChHHhhHHHH-hcceEEEccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 55 4334333221 22347999999999999999988754332 123355677888999976443
No 88
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=3e-05 Score=89.28 Aligned_cols=179 Identities=13% Similarity=0.092 Sum_probs=105.5
Q ss_pred CccccchhhHHHHHHHHcCCCC--------CeEEEEEEeCCCccHHHHHHHHHhhhccccC-------------------
Q 045458 28 KELVGIESRLEKIRFLMGTGSS--------DVRMIGIWGMGGLGKTTLARVVYDSMSYEFD------------------- 80 (1170)
Q Consensus 28 ~~~vGr~~~~~~l~~~L~~~~~--------~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~------------------- 80 (1170)
++++|-+..++.|.+++..+.+ -.+.+.++|+.|+|||++|+.+++.+-....
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 5689999999999999876431 3567899999999999999999886432211
Q ss_pred -ceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH--HHHHHhhcCcC
Q 045458 81 -GSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV--EQLQSLAGKRD 157 (1170)
Q Consensus 81 -~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~ 157 (1170)
...++. . ......+.. .+++...+.. .-..+++-++|+|+++.. .....+...+.
T Consensus 85 pD~~~i~-~---~~~~i~i~~-iR~l~~~~~~-----------------~p~~~~~kViiIDead~m~~~aanaLLk~LE 142 (394)
T PRK07940 85 PDVRVVA-P---EGLSIGVDE-VRELVTIAAR-----------------RPSTGRWRIVVIEDADRLTERAANALLKAVE 142 (394)
T ss_pred CCEEEec-c---ccccCCHHH-HHHHHHHHHh-----------------CcccCCcEEEEEechhhcCHHHHHHHHHHhh
Confidence 011110 0 000000000 1111111100 001234457888999765 33444554444
Q ss_pred CCCCCcEEEEEeCCchhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHH
Q 045458 158 WFGPGSRILITTRDKQLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVL 235 (1170)
Q Consensus 158 ~~~~gsrIIiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 235 (1170)
...++..+|++|.+..-....-......+.++.++.++..+++..... ...+.+..+++.++|.|.....+
T Consensus 143 ep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~-------~~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 143 EPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG-------VDPETARRAARASQGHIGRARRL 213 (394)
T ss_pred cCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 445677777777665322222223335899999999999998874321 11345778899999999755443
No 89
>PRK08727 hypothetical protein; Validated
Probab=98.21 E-value=3.1e-05 Score=83.36 Aligned_cols=172 Identities=15% Similarity=0.163 Sum_probs=96.7
Q ss_pred ccCccccchhh-HHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHH
Q 045458 26 TIKELVGIESR-LEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQ 104 (1170)
Q Consensus 26 ~~~~~vGr~~~-~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (1170)
..++||+.+.. +..+..+... .....+.|+|..|+|||+||+++++....+...+.|+. .. +....
T Consensus 17 ~f~~f~~~~~n~~~~~~~~~~~--~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~-~~----------~~~~~ 83 (233)
T PRK08727 17 RFDSYIAAPDGLLAQLQALAAG--QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP-LQ----------AAAGR 83 (233)
T ss_pred ChhhccCCcHHHHHHHHHHHhc--cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe-HH----------Hhhhh
Confidence 34667765543 3444443322 22356999999999999999999988766544455554 11 11111
Q ss_pred HHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH---HHH-HhhcCcCC-CCCCcEEEEEeCCchhhh---
Q 045458 105 LLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVE---QLQ-SLAGKRDW-FGPGSRILITTRDKQLLV--- 176 (1170)
Q Consensus 105 ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~---~l~-~l~~~~~~-~~~gsrIIiTTR~~~v~~--- 176 (1170)
+.. +.+.+ .+.-+|||||++... .++ .+...... ..+|..||+|++...-.-
T Consensus 84 ~~~-------------------~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~ 143 (233)
T PRK08727 84 LRD-------------------ALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALV 143 (233)
T ss_pred HHH-------------------HHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhh
Confidence 100 11111 133489999996431 222 22211111 135677999998643210
Q ss_pred --hh--CCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHH
Q 045458 177 --AH--EVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLAL 232 (1170)
Q Consensus 177 --~~--~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 232 (1170)
.. .......+++++++.++..+++..++.... ..-..+....+++++.|-.-.+
T Consensus 144 ~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~--l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 144 LPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRG--LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred hHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhCCCCHHHH
Confidence 00 011123899999999999999998775432 2233455667777777655444
No 90
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.20 E-value=5.1e-06 Score=81.04 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=71.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhccc-----cCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHH
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSYE-----FDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGIN 125 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~ 125 (1170)
.+++.|+|.+|+|||++++.+.+....+ -...+|+. +... .....+..+++..+...... ..+..+..+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~i~~~l~~~~~~-~~~~~~l~~ 77 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN-CPSS----RTPRDFAQEILEALGLPLKS-RQTSDELRS 77 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE-HHHH----SSHHHHHHHHHHHHT-SSSS-TS-HHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE-eCCC----CCHHHHHHHHHHHhCccccc-cCCHHHHHH
Confidence 4789999999999999999999876543 12234443 2221 23477888888887643332 234555666
Q ss_pred HHHHhhCCCe-EEEEEeCCCCH---HHHHHhhcCcCCCCCCcEEEEEeCC
Q 045458 126 IIGSRLRQKK-VLLIIDDVADV---EQLQSLAGKRDWFGPGSRILITTRD 171 (1170)
Q Consensus 126 ~i~~~L~~k~-~LlVLDdv~~~---~~l~~l~~~~~~~~~gsrIIiTTR~ 171 (1170)
.+.+.+...+ .+||+|+++.. +.++.+..... ..+.+||++.++
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 7777776544 59999999766 33555543333 677788888776
No 91
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=3.3e-05 Score=90.64 Aligned_cols=182 Identities=19% Similarity=0.209 Sum_probs=110.6
Q ss_pred CCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccC---------------------ce
Q 045458 24 PETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFD---------------------GS 82 (1170)
Q Consensus 24 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~---------------------~~ 82 (1170)
|...+++||-+...+.|..++..+. -.+.+.++|+.|+||||+|+.++..+-.... ..
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 5566789999999999988887542 2457899999999999999999875422111 11
Q ss_pred eEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH--HHHHHhhcCcCCCC
Q 045458 83 SFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV--EQLQSLAGKRDWFG 160 (1170)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~ 160 (1170)
+.+. .+... . .+-.++++..... .-..+++-++|+|+++.. ...+++...+....
T Consensus 88 ~eid----aas~~-~-vddIR~Iie~~~~-----------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp 144 (491)
T PRK14964 88 IEID----AASNT-S-VDDIKVILENSCY-----------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPA 144 (491)
T ss_pred EEEe----cccCC-C-HHHHHHHHHHHHh-----------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCC
Confidence 1111 00000 1 1111112111110 001245568999999754 44666665555556
Q ss_pred CCcEEEEEeCCc-hhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHH
Q 045458 161 PGSRILITTRDK-QLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLAL 232 (1170)
Q Consensus 161 ~gsrIIiTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 232 (1170)
+.+++|++|.+. .+.... ......++++.++.++..+.+...+..... ....+.+..|++.++|.+-.+
T Consensus 145 ~~v~fIlatte~~Kl~~tI-~SRc~~~~f~~l~~~el~~~L~~ia~~Egi--~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 145 PHVKFILATTEVKKIPVTI-ISRCQRFDLQKIPTDKLVEHLVDIAKKENI--EHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred CCeEEEEEeCChHHHHHHH-HHhheeeecccccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 777777777543 332221 222348999999999999999887744332 223456778899998877543
No 92
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.19 E-value=3.9e-05 Score=80.02 Aligned_cols=90 Identities=22% Similarity=0.276 Sum_probs=61.6
Q ss_pred CCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCCch-hhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCC
Q 045458 133 QKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRDKQ-LLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQ 209 (1170)
Q Consensus 133 ~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 209 (1170)
+.+-++|+|+++.. +..+.+...+....+.+.+|++|++.. +.... ......+++.+++.++..+++....
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i-~sr~~~~~~~~~~~~~~~~~l~~~g----- 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTI-RSRCQVLPFPPLSEEALLQWLIRQG----- 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHH-HhhcEEeeCCCCCHHHHHHHHHHcC-----
Confidence 45668999999764 345566655555556778888777542 22211 1223489999999999999998761
Q ss_pred CChhhHHHHHHHHHHhCCCchH
Q 045458 210 PVGEYVELSERVLEYAGGLPLA 231 (1170)
Q Consensus 210 ~~~~~~~~~~~i~~~~~GlPLa 231 (1170)
...+.+..+++.++|.|..
T Consensus 169 ---i~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 169 ---ISEEAAELLLALAGGSPGA 187 (188)
T ss_pred ---CCHHHHHHHHHHcCCCccc
Confidence 1235688999999998853
No 93
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.19 E-value=2e-05 Score=85.02 Aligned_cols=179 Identities=18% Similarity=0.223 Sum_probs=98.7
Q ss_pred CCCccCccc-cchhhH-HHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHH
Q 045458 23 EPETIKELV-GIESRL-EKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVIS 100 (1170)
Q Consensus 23 ~~~~~~~~v-Gr~~~~-~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 100 (1170)
.+...++|+ |..... ..+.++... ....+.+.|+|..|+|||+||+++++.....-....++. ...
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~~-~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~-~~~---------- 80 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAAG-PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD-AAS---------- 80 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHhc-cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe-hHH----------
Confidence 344456666 544333 445555442 233467889999999999999999987643322334443 111
Q ss_pred HHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH--HHHHHhhcCcCC-CCCCc-EEEEEeCCchhhh
Q 045458 101 LQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV--EQLQSLAGKRDW-FGPGS-RILITTRDKQLLV 176 (1170)
Q Consensus 101 l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~-~~~gs-rIIiTTR~~~v~~ 176 (1170)
.... + ... ...-+||+||++.. .+.+.+...... ...+. .||+|++......
T Consensus 81 ~~~~----~-------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~ 136 (227)
T PRK08903 81 PLLA----F-------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLAL 136 (227)
T ss_pred hHHH----H-------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhC
Confidence 0000 0 011 12337889999654 222223222211 12344 3666666433111
Q ss_pred hh------CCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHHHHhh
Q 045458 177 AH------EVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVLGSFL 239 (1170)
Q Consensus 177 ~~------~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L 239 (1170)
.. .......+++++++.++-.+++...+-... ..-.++....+++...|++..+..+...+
T Consensus 137 ~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~--v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 137 PLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERG--LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 10 111124899999999987777776542222 22334667788888999998887776554
No 94
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=2.5e-05 Score=94.66 Aligned_cols=199 Identities=16% Similarity=0.164 Sum_probs=108.1
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccc--cCceeEEEecchhhccCCcHHH
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE--FDGSSFLADVREKSEKEGSVIS 100 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~ 100 (1170)
.|...+++||-+..++.|.+++..+ .-...+.++|+.|+||||+|+.+++.+-.. .+...|.....+..... .
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C----~ 85 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGEC----E 85 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccC----H
Confidence 4556678999999999999988753 224668899999999999999999875331 11111111110100000 0
Q ss_pred HHHHHHHH----HhhcCCCccccchhhHHHHHHhh-----CCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEe
Q 045458 101 LQKQLLSN----LLKLGDISIWHVEDGINIIGSRL-----RQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITT 169 (1170)
Q Consensus 101 l~~~ll~~----l~~~~~~~~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTT 169 (1170)
.-..+... +...........++..+ +.+.+ .+++-++|+|+++.. ...+.|...+..-.+.+.+|++|
T Consensus 86 sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~-l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 86 SCRDFDAGTSLNISEFDAASNNSVDDIRQ-LRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred HHHHHhccCCCCeEEecccccCCHHHHHH-HHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 00000000 00000000001122221 22222 234457899999765 33555555544434566666555
Q ss_pred CC-chhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCch
Q 045458 170 RD-KQLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPL 230 (1170)
Q Consensus 170 R~-~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 230 (1170)
.. ..+.... ......+++..++.++....+...+-.... .-..+.+..+++.++|..-
T Consensus 165 ~~~~kLl~TI-~SRc~~vef~~l~~~ei~~~L~~i~~~egi--~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 165 TELHKIPATI-ASRCQRFNFKRIPLDEIQSQLQMICRAEGI--QIDADALQLIARKAQGSMR 223 (620)
T ss_pred CChhhhhHHH-HhhceEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHH
Confidence 43 3332221 222348999999999998888776532221 1234567889999999654
No 95
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.17 E-value=7.4e-06 Score=87.79 Aligned_cols=154 Identities=20% Similarity=0.350 Sum_probs=93.9
Q ss_pred cCCCccCccccchhhHH---HHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcH
Q 045458 22 TEPETIKELVGIESRLE---KIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSV 98 (1170)
Q Consensus 22 ~~~~~~~~~vGr~~~~~---~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 98 (1170)
..|...+++||.+..+. .|.+++.. +...-+.+||++|+||||||+.+...-+..- ..|+. +.........
T Consensus 132 mRPktL~dyvGQ~hlv~q~gllrs~ieq--~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfve-lSAt~a~t~d- 205 (554)
T KOG2028|consen 132 MRPKTLDDYVGQSHLVGQDGLLRSLIEQ--NRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVE-LSATNAKTND- 205 (554)
T ss_pred cCcchHHHhcchhhhcCcchHHHHHHHc--CCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEE-EeccccchHH-
Confidence 45556677888776553 34455543 6677888999999999999999998654431 33444 2222222211
Q ss_pred HHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCC--CHHHHHHhhcCcCCCCCCcEEEE--EeCCchh
Q 045458 99 ISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVA--DVEQLQSLAGKRDWFGPGSRILI--TTRDKQL 174 (1170)
Q Consensus 99 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~--~~~~l~~l~~~~~~~~~gsrIIi--TTR~~~v 174 (1170)
.+.+..+.. =...+..+|.+|.+|.|. +..|-+.+++.. ..|.-++| ||.++..
T Consensus 206 ---vR~ife~aq----------------~~~~l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSF 263 (554)
T KOG2028|consen 206 ---VRDIFEQAQ----------------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSF 263 (554)
T ss_pred ---HHHHHHHHH----------------HHHhhhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCcc
Confidence 222222211 012345789999999994 455666665543 46666555 6666543
Q ss_pred hhhh-CCCCccEEECCCCChHHHHHHHHHh
Q 045458 175 LVAH-EVDEEHILNLDVLNNDEALQLFSMK 203 (1170)
Q Consensus 175 ~~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~ 203 (1170)
.... -...-.++.++.|+.++...++.+.
T Consensus 264 qln~aLlSRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 264 QLNAALLSRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred chhHHHHhccceeEeccCCHHHHHHHHHHH
Confidence 2211 1233348999999999999988773
No 96
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=1.8e-05 Score=94.18 Aligned_cols=193 Identities=17% Similarity=0.112 Sum_probs=105.6
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHH
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQ 102 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 102 (1170)
.|...+++||.+..++.+..++..+ .-.+.+.++|+.|+||||+|+.+++.+...- |.. .. ..... ...
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~----~~~-~~-~Cg~C----~sC 79 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLN----PKD-GD-CCNSC----SVC 79 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCCC----CCC-CC-CCccc----HHH
Confidence 4566688999999999999988653 2346788999999999999999998753211 000 00 00000 000
Q ss_pred HHHHHHH----hhcCCCccccchhhHHHHHHh-----hCCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCC
Q 045458 103 KQLLSNL----LKLGDISIWHVEDGINIIGSR-----LRQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRD 171 (1170)
Q Consensus 103 ~~ll~~l----~~~~~~~~~~~~~~~~~i~~~-----L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~ 171 (1170)
+.+.... ...........++.. .+.+. ...++-++|+|+++.. .....+...+....+.+.+|++|..
T Consensus 80 r~i~~~~h~DiieIdaas~igVd~IR-eIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~ 158 (605)
T PRK05896 80 ESINTNQSVDIVELDAASNNGVDEIR-NIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTE 158 (605)
T ss_pred HHHHcCCCCceEEeccccccCHHHHH-HHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCC
Confidence 0000000 000000000111111 11111 1123336999999764 4455555544333456666665544
Q ss_pred c-hhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCch
Q 045458 172 K-QLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPL 230 (1170)
Q Consensus 172 ~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 230 (1170)
. .+.... ......+++.+++.++....+...+-.... ....+.+..+++.++|.+-
T Consensus 159 ~~KLl~TI-~SRcq~ieF~~Ls~~eL~~~L~~il~kegi--~Is~eal~~La~lS~GdlR 215 (605)
T PRK05896 159 FQKIPLTI-ISRCQRYNFKKLNNSELQELLKSIAKKEKI--KIEDNAIDKIADLADGSLR 215 (605)
T ss_pred hHhhhHHH-HhhhhhcccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHH
Confidence 3 332221 122247999999999999998876643221 1223557788899998654
No 97
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=4.2e-05 Score=88.90 Aligned_cols=185 Identities=15% Similarity=0.165 Sum_probs=108.3
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccc--------cCceeEEEecchhhcc
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE--------FDGSSFLADVREKSEK 94 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~--------f~~~~~~~~~~~~~~~ 94 (1170)
.|...++++|.+...+.+.+.+..+ .-.+.+.++|++|+||||+|+.+.+.+... |...++-. ... .
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l--~~~--~ 86 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL--DAA--S 86 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe--ccc--c
Confidence 4556678999999999999999753 234688899999999999999998875431 11111110 000 0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCCc
Q 045458 95 EGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRDK 172 (1170)
Q Consensus 95 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~ 172 (1170)
... .....++..++.. . -..+++-++|+|+++.. ..++.+........+.+.+|++|..+
T Consensus 87 ~~~-~~~i~~l~~~~~~----------------~-p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~ 148 (367)
T PRK14970 87 NNS-VDDIRNLIDQVRI----------------P-PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEK 148 (367)
T ss_pred CCC-HHHHHHHHHHHhh----------------c-cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCc
Confidence 000 1111122221110 0 01234557999998754 33555544333334456666666433
Q ss_pred -hhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHH
Q 045458 173 -QLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALK 233 (1170)
Q Consensus 173 -~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 233 (1170)
.+.... ......+++++++.++....+...+...... -..+.+..+++.++|.+-.+.
T Consensus 149 ~kl~~~l-~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~--i~~~al~~l~~~~~gdlr~~~ 207 (367)
T PRK14970 149 HKIIPTI-LSRCQIFDFKRITIKDIKEHLAGIAVKEGIK--FEDDALHIIAQKADGALRDAL 207 (367)
T ss_pred ccCCHHH-HhcceeEecCCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhCCCCHHHHH
Confidence 322221 1222379999999999999998877443321 224667888888988665433
No 98
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.14 E-value=4.7e-05 Score=82.11 Aligned_cols=174 Identities=17% Similarity=0.207 Sum_probs=95.6
Q ss_pred Cccc-cch-hhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHH
Q 045458 28 KELV-GIE-SRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQL 105 (1170)
Q Consensus 28 ~~~v-Gr~-~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 105 (1170)
++|+ |-. ..+..+.++... ...+.+.|+|+.|+|||+||+++++....+-..+.|+. +... .....
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~--~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~-~~~~-------~~~~~-- 89 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQ--EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP-LDKR-------AWFVP-- 89 (235)
T ss_pred cccccCccHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE-HHHH-------hhhhH--
Confidence 4455 633 234455555433 23467899999999999999999987665433344444 1110 00000
Q ss_pred HHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH---HHHHHhh-cCcCC-CCCC-cEEEEEeCCchhhh---
Q 045458 106 LSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV---EQLQSLA-GKRDW-FGPG-SRILITTRDKQLLV--- 176 (1170)
Q Consensus 106 l~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~---~~l~~l~-~~~~~-~~~g-srIIiTTR~~~v~~--- 176 (1170)
+ +.+.+.+ --+|++||++.. .+|+... ..+.. ...| .++|+||+.....-
T Consensus 90 ----------------~----~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~ 148 (235)
T PRK08084 90 ----------------E----VLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLG 148 (235)
T ss_pred ----------------H----HHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcc
Confidence 0 1111111 137899999653 2333211 11110 1133 47999998653210
Q ss_pred --hh--CCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHHH
Q 045458 177 --AH--EVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVLG 236 (1170)
Q Consensus 177 --~~--~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~ 236 (1170)
.. ......++++++++.++-.+.+.+++.... ..-.++...-+++++.|..-++..+-
T Consensus 149 ~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~--~~l~~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 149 LPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRG--FELPEDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred cHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhhcCCHHHHHHHH
Confidence 00 011123899999999999999987664322 22334667777777777665554443
No 99
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=5e-05 Score=91.73 Aligned_cols=198 Identities=16% Similarity=0.173 Sum_probs=110.4
Q ss_pred CCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccC---ceeEEEecchhhccCCcHHH
Q 045458 24 PETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFD---GSSFLADVREKSEKEGSVIS 100 (1170)
Q Consensus 24 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~~ 100 (1170)
|...+++||-+.-++.|..++..+ .-...+.++|..|+||||+|+.+++.+-..-. ...- ....+. -.
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~-------~~pCg~-C~ 82 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQ-RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT-------ATPCGV-CQ 82 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC-------CCCCCc-cH
Confidence 455678999988889999998764 23467789999999999999999876532100 0000 000000 00
Q ss_pred HHHHHHH----HHhhcCCCccccchhhHHHHHHh----hCCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeC
Q 045458 101 LQKQLLS----NLLKLGDISIWHVEDGINIIGSR----LRQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTR 170 (1170)
Q Consensus 101 l~~~ll~----~l~~~~~~~~~~~~~~~~~i~~~----L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR 170 (1170)
.-..+.. .+..........+++..+.+... ..++.-++|||+|+.. ...+.+...+..-....++|++|.
T Consensus 83 ~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Tt 162 (618)
T PRK14951 83 ACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATT 162 (618)
T ss_pred HHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEEC
Confidence 0000000 00000000000111111111110 1234558899999754 456666665554456677776665
Q ss_pred Cc-hhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHH
Q 045458 171 DK-QLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALK 233 (1170)
Q Consensus 171 ~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 233 (1170)
+. .+... -......++++.++.++..+.+...+...... ...+....|++.++|.+--+.
T Consensus 163 d~~kil~T-IlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~--ie~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 163 DPQKVPVT-VLSRCLQFNLRPMAPETVLEHLTQVLAAENVP--AEPQALRLLARAARGSMRDAL 223 (618)
T ss_pred CchhhhHH-HHHhceeeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 53 33222 12223489999999999999998776433222 223567788888888764443
No 100
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=7.6e-05 Score=89.16 Aligned_cols=185 Identities=14% Similarity=0.123 Sum_probs=109.3
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccc--c-------------------Cc
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE--F-------------------DG 81 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~--f-------------------~~ 81 (1170)
.|...+++||-+.-++.|..++..+ .-...+.++|+.|+||||+|+.+++.+-.. . ..
T Consensus 11 RP~~f~divGq~~v~~~L~~~~~~~-~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d 89 (509)
T PRK14958 11 RPRCFQEVIGQAPVVRALSNALDQQ-YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPD 89 (509)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhC-CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCce
Confidence 3556678999999999999999753 224567899999999999999999865321 0 00
Q ss_pred eeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH--HHHHHhhcCcCCC
Q 045458 82 SSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV--EQLQSLAGKRDWF 159 (1170)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~ 159 (1170)
...+. ... ...+.+ .++++..+.. .-..++.-++|+|+++.. ...+++...+...
T Consensus 90 ~~eid----aas-~~~v~~-iR~l~~~~~~-----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEep 146 (509)
T PRK14958 90 LFEVD----AAS-RTKVED-TRELLDNIPY-----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEP 146 (509)
T ss_pred EEEEc----ccc-cCCHHH-HHHHHHHHhh-----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhcc
Confidence 11110 000 001011 1112221110 011245568899999764 4556666555544
Q ss_pred CCCcEEEEEeCCchhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHH
Q 045458 160 GPGSRILITTRDKQLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALK 233 (1170)
Q Consensus 160 ~~gsrIIiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 233 (1170)
.+.+++|++|.+..-....-......+++++++.++..+.+...+-..... ...+....|++.++|.+.-+.
T Consensus 147 p~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~--~~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 147 PSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE--FENAALDLLARAANGSVRDAL 218 (509)
T ss_pred CCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHH
Confidence 567888877765432111111222378999999999888777665333222 223456778888888775443
No 101
>PRK09087 hypothetical protein; Validated
Probab=98.11 E-value=5.9e-05 Score=80.51 Aligned_cols=140 Identities=13% Similarity=0.089 Sum_probs=83.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSR 130 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~ 130 (1170)
.+.+.|||.+|+|||+|++.++.... ..++.. .....+....+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~-----------~~~~~~~~~~~--------------------- 86 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP-----------NEIGSDAANAA--------------------- 86 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH-----------HHcchHHHHhh---------------------
Confidence 36689999999999999999886532 224431 01111111111
Q ss_pred hCCCeEEEEEeCCCCH----HHHHHhhcCcCCCCCCcEEEEEeCCch---------hhhhhCCCCccEEECCCCChHHHH
Q 045458 131 LRQKKVLLIIDDVADV----EQLQSLAGKRDWFGPGSRILITTRDKQ---------LLVAHEVDEEHILNLDVLNNDEAL 197 (1170)
Q Consensus 131 L~~k~~LlVLDdv~~~----~~l~~l~~~~~~~~~gsrIIiTTR~~~---------v~~~~~~~~~~~~~l~~L~~~ea~ 197 (1170)
.+ -+|++||++.. +.+-.+..... ..|..||+|++... +.... ....++++++++.++-.
T Consensus 87 -~~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl--~~gl~~~l~~pd~e~~~ 159 (226)
T PRK09087 87 -AE--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRL--KAATVVEIGEPDDALLS 159 (226)
T ss_pred -hc--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHH--hCCceeecCCCCHHHHH
Confidence 11 27888999543 22222222111 35778999987532 11111 22248999999999999
Q ss_pred HHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHHH
Q 045458 198 QLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVLG 236 (1170)
Q Consensus 198 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~ 236 (1170)
+++.+.+-... ..-.++...-|++++.|..-++..+-
T Consensus 160 ~iL~~~~~~~~--~~l~~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 160 QVIFKLFADRQ--LYVDPHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HHHHHHHHHcC--CCCCHHHHHHHHHHhhhhHHHHHHHH
Confidence 99998874322 22334667777777777766665433
No 102
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=3.9e-08 Score=102.23 Aligned_cols=105 Identities=24% Similarity=0.263 Sum_probs=59.8
Q ss_pred ccCeEeccCcCCC--ccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCc--cccCCCCCCcEE
Q 045458 635 DLSELFLDGTSIT--EVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVP--ETLGQVESLEEL 710 (1170)
Q Consensus 635 ~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~--~~l~~l~~L~~L 710 (1170)
.|+.|+++...++ .+...++.+.+|+.|.+.+++.-..+...+..-.+|+.|+|++|+-+.... -.+.+++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 3555555555554 344445666677777777766655565666666777777777776554322 234456667777
Q ss_pred EccCccCCCCC--ccccC-CCCCcEEEecCCC
Q 045458 711 HISGTAIRQPP--SGIFH-MKNLKALYFRGCK 739 (1170)
Q Consensus 711 ~L~~~~i~~lp--~~l~~-l~~L~~L~L~~c~ 739 (1170)
+++.|.+..-. ..+.+ -++|+.|+|+||.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r 297 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYR 297 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhH
Confidence 77766554211 11111 2456666666665
No 103
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=0.00013 Score=87.89 Aligned_cols=198 Identities=18% Similarity=0.131 Sum_probs=110.1
Q ss_pred CCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHH
Q 045458 24 PETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQK 103 (1170)
Q Consensus 24 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 103 (1170)
|...+++||.+..++.|..++..+ .-...+.++|+.|+||||+|+.++..+....... . ...+. -..-.
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-~--------~pCg~-C~~C~ 77 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT-A--------TPCGV-CESCV 77 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-C--------Ccccc-cHHHH
Confidence 555678999999999999998753 2345678999999999999999998654211000 0 00000 00000
Q ss_pred HHHHH---------HhhcCCCccccchhhHHHHHHh-hCCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCC
Q 045458 104 QLLSN---------LLKLGDISIWHVEDGINIIGSR-LRQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRD 171 (1170)
Q Consensus 104 ~ll~~---------l~~~~~~~~~~~~~~~~~i~~~-L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~ 171 (1170)
.+... +.......+....+.++.+... ..+++-++|+|+++.. ...+.|+..+....+...+|++|.+
T Consensus 78 ~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte 157 (584)
T PRK14952 78 ALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTE 157 (584)
T ss_pred HhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 00000 0000000000111111111110 1245558899999754 4566666555555567777766654
Q ss_pred c-hhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCch-HHHHH
Q 045458 172 K-QLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPL-ALKVL 235 (1170)
Q Consensus 172 ~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~l 235 (1170)
. .+.... ......|++..++.++..+++...+-..... ...+.+..|++.++|.+- |+..+
T Consensus 158 ~~kll~TI-~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~--i~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 158 PEKVLPTI-RSRTHHYPFRLLPPRTMRALIARICEQEGVV--VDDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred hHhhHHHH-HHhceEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3 333221 1223489999999999998988766433321 223556778889999774 44443
No 104
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.08 E-value=3.4e-05 Score=87.94 Aligned_cols=152 Identities=17% Similarity=0.267 Sum_probs=89.0
Q ss_pred CCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHH
Q 045458 24 PETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQK 103 (1170)
Q Consensus 24 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 103 (1170)
|...++++|.+...+.+..++..+ .-..++.++|++|+||||+|+.+++.....+ ..+. ... +.+..+..
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~-~~~-----~~~~~i~~ 86 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVN-GSD-----CRIDFVRN 86 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEec-cCc-----ccHHHHHH
Confidence 556688999999999999998753 2346777899999999999999998763221 2222 111 11122211
Q ss_pred HHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH---HHHHHhhcCcCCCCCCcEEEEEeCCchhhhhhCC
Q 045458 104 QLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV---EQLQSLAGKRDWFGPGSRILITTRDKQLLVAHEV 180 (1170)
Q Consensus 104 ~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~---~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~ 180 (1170)
.+ ...... ..+...+-+||+||++.. +..+.+.........++++|+||.........-.
T Consensus 87 ~l-~~~~~~----------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~ 149 (316)
T PHA02544 87 RL-TRFAST----------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLR 149 (316)
T ss_pred HH-HHHHHh----------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHH
Confidence 11 111100 001134457889999755 2223333323334567899999976532211111
Q ss_pred CCccEEECCCCChHHHHHHHHH
Q 045458 181 DEEHILNLDVLNNDEALQLFSM 202 (1170)
Q Consensus 181 ~~~~~~~l~~L~~~ea~~Lf~~ 202 (1170)
.....+.++..+.++..+++..
T Consensus 150 sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 150 SRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred hhceEEEeCCCCHHHHHHHHHH
Confidence 2223678888888888777654
No 105
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.2e-07 Score=98.59 Aligned_cols=174 Identities=21% Similarity=0.182 Sum_probs=92.4
Q ss_pred eeEEEccCCChH--HHhhcCCCCCCCcEEEcCCCCCCCcCC-CCCCCCCccEEEeeccCCccccc--ccccCCCCccEEE
Q 045458 448 TIEFKMLCSRIE--ELWKGIKSLNMLKVMKVSYSQSLIKIP-DFTGVPNLEKLYLEGCTRLREIH--PSLLLHSKLVILN 522 (1170)
Q Consensus 448 L~~L~L~~s~i~--~L~~~l~~l~~L~~L~Ls~~~~l~~~~-~~~~l~~L~~L~L~~~~~l~~~~--~~i~~l~~L~~L~ 522 (1170)
|++|||+.+.|+ .+---++.+.+|+.|.+.+.+.-..+- .+.+-.+|+.|+|+.|..+.... --+.+++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 445555555554 344446677888888887766332222 26777888888888887766432 2345677777788
Q ss_pred eeCCCCCCccCccc-c--CCcccEEEecCCCCCC---ccccccCCCCCCcEEEecCccC-C-ccCcchhcCCCCCEEecc
Q 045458 523 LTGCTSLATLPGKI-F--MKSVKKLVLSGCSKLK---KFPKIVGNMECLSKLLLDGTAI-G-ELPLSIELLSKLVSLDLN 594 (1170)
Q Consensus 523 L~~c~~l~~lp~~~-~--l~~L~~L~L~~~~~~~---~l~~~l~~l~~L~~L~L~~~~i-~-~l~~~i~~l~~L~~L~L~ 594 (1170)
++.|...+..-..+ . -++|+.|+|+||...- .+..-...+++|..|+++.+.. + ..-..+.+++.|++|.++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 87776555432111 1 5677777777764321 1112223445555555554332 1 112233445555555555
Q ss_pred CCCCCCc-CccccCCCCcccEEEeeCCC
Q 045458 595 NCKNFKN-LPVTISSLKCLRSLVLSGCS 621 (1170)
Q Consensus 595 ~~~~l~~-lp~~l~~l~~L~~L~L~~~~ 621 (1170)
.|..+.. .--.+...++|.+|++.||-
T Consensus 347 RCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 347 RCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhcCCChHHeeeeccCcceEEEEecccc
Confidence 5543211 00123444555555555543
No 106
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=3.9e-05 Score=92.29 Aligned_cols=181 Identities=18% Similarity=0.170 Sum_probs=107.7
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccC---------------------c
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFD---------------------G 81 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~---------------------~ 81 (1170)
.|...+++||-+..++.|..++..+ .-.+.+.++|+.|+||||+|+.++..+-.... .
T Consensus 11 rP~~f~divGq~~v~~~L~~~i~~~-~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d 89 (527)
T PRK14969 11 RPKSFSELVGQEHVVRALTNALEQQ-RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVD 89 (527)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHcC-CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCc
Confidence 3455678999999999999998753 22466789999999999999999986532210 0
Q ss_pred eeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH--HHHHhhcCcCCC
Q 045458 82 SSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVE--QLQSLAGKRDWF 159 (1170)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~--~l~~l~~~~~~~ 159 (1170)
.+.+. .. .... .+..++++..+.. .-..+++-++|+|+++... ..+.+...+...
T Consensus 90 ~~ei~----~~-~~~~-vd~ir~l~~~~~~-----------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEep 146 (527)
T PRK14969 90 LIEVD----AA-SNTQ-VDAMRELLDNAQY-----------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEP 146 (527)
T ss_pred eeEee----cc-ccCC-HHHHHHHHHHHhh-----------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCC
Confidence 00000 00 0000 1111112111110 0012456689999998653 355555555444
Q ss_pred CCCcEEEEEeCCch-hhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCch
Q 045458 160 GPGSRILITTRDKQ-LLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPL 230 (1170)
Q Consensus 160 ~~gsrIIiTTR~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 230 (1170)
...+.+|++|.+.. +... -......++++.++.++..+.+...+-.... ....+.+..+++.++|.+-
T Consensus 147 p~~~~fIL~t~d~~kil~t-I~SRc~~~~f~~l~~~~i~~~L~~il~~egi--~~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 147 PEHVKFILATTDPQKIPVT-VLSRCLQFNLKQMPPPLIVSHLQHILEQENI--PFDATALQLLARAAAGSMR 215 (527)
T ss_pred CCCEEEEEEeCChhhCchh-HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 56677777665543 2211 1112237999999999999888776633221 2233556788899999775
No 107
>PLN03150 hypothetical protein; Provisional
Probab=98.07 E-value=8.4e-06 Score=100.79 Aligned_cols=111 Identities=29% Similarity=0.483 Sum_probs=79.9
Q ss_pred CcEEEccCccCC-CCCccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCC
Q 045458 707 LEELHISGTAIR-QPPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDC 785 (1170)
Q Consensus 707 L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c 785 (1170)
++.|+|+++.+. .+|..+..+++|+.|+|++|... ..+|..+..+++|+.|+|++|
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~-----------------------g~iP~~~~~l~~L~~LdLs~N 476 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIR-----------------------GNIPPSLGSITSLEVLDLSYN 476 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCccc-----------------------CcCChHHhCCCCCCEEECCCC
Confidence 455666666665 45666666777777777666532 245666777888888888888
Q ss_pred CCCCCCCcCccCCCCCCCEEECcCCCCc-ccchhhhcC-CCCCEeeccCccCCCcCCC
Q 045458 786 DLGEGFIPNDIGNLRSLKVLCLSNNSFV-SLPASISRL-SKLECLNLNGCKKLQSLPP 841 (1170)
Q Consensus 786 ~l~~~~~~~~l~~l~sL~~L~Ls~n~l~-~lp~~i~~l-~~L~~L~L~~c~~L~~lp~ 841 (1170)
++. +.+|..++.+++|+.|+|++|++. .+|..+..+ .++..+++.+|+.+...|.
T Consensus 477 ~ls-g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 477 SFN-GSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred CCC-CCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 874 567888888889999999988887 678777653 4677888888877766554
No 108
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=7.9e-05 Score=89.32 Aligned_cols=198 Identities=15% Similarity=0.164 Sum_probs=112.9
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHH
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQ 102 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 102 (1170)
.|...+++||-+...+.|.+++..+ .-...+.++|+.|+||||+|+.+++.+-....... ...+. -..-
T Consensus 11 RP~sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~---------~pCg~-C~sC 79 (624)
T PRK14959 11 RPQTFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG---------EPCNT-CEQC 79 (624)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC---------CCCcc-cHHH
Confidence 3555678999998888888888753 22477889999999999999999986532110000 00000 0000
Q ss_pred HHHHHHHhhcCCCcc--------ccchhhHHHHHHh-----hCCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEE
Q 045458 103 KQLLSNLLKLGDISI--------WHVEDGINIIGSR-----LRQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILI 167 (1170)
Q Consensus 103 ~~ll~~l~~~~~~~~--------~~~~~~~~~i~~~-----L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIi 167 (1170)
+.+.. ....+. ...++ ++.+.+. ..+++-++|+|+++.. +..+.|...+....+...+|+
T Consensus 80 ~~i~~----g~hpDv~eId~a~~~~Id~-iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifIL 154 (624)
T PRK14959 80 RKVTQ----GMHVDVVEIDGASNRGIDD-AKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVL 154 (624)
T ss_pred HHHhc----CCCCceEEEecccccCHHH-HHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEE
Confidence 00000 000000 00111 1111111 2345668999999765 445666555443345666777
Q ss_pred EeCCc-hhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCc-hHHHHHHHhh
Q 045458 168 TTRDK-QLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLP-LALKVLGSFL 239 (1170)
Q Consensus 168 TTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~l~~~L 239 (1170)
+|.+. .+.... ......++++.++.++..+.+...+..... ....+.+..|++.++|.+ .|+..+...+
T Consensus 155 aTt~~~kll~TI-~SRcq~i~F~pLs~~eL~~~L~~il~~egi--~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 155 ATTEPHKFPVTI-VSRCQHFTFTRLSEAGLEAHLTKVLGREGV--DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred ecCChhhhhHHH-HhhhhccccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 66554 333221 122237899999999999999876643322 123456778889999864 6776665443
No 109
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.03 E-value=0.00016 Score=90.68 Aligned_cols=195 Identities=16% Similarity=0.151 Sum_probs=109.0
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHH
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQ 102 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 102 (1170)
-|....++||.+..++.|..++..+. -.+.+.++|..|+||||+|+.+++.+-....... ..++. -..-
T Consensus 10 RP~~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~---------~pCg~-C~sC 78 (824)
T PRK07764 10 RPATFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTS---------TPCGE-CDSC 78 (824)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC---------CCCcc-cHHH
Confidence 34556789999999999999987632 2366889999999999999999987632110000 00000 0000
Q ss_pred HHHHHH------HhhcCCCccccchhhHHHHHHh-----hCCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEe
Q 045458 103 KQLLSN------LLKLGDISIWHVEDGINIIGSR-----LRQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITT 169 (1170)
Q Consensus 103 ~~ll~~------l~~~~~~~~~~~~~~~~~i~~~-----L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTT 169 (1170)
..+... +..........+++..+ +.+. ..+++-++|||+++.. +..+.|+..+......+.+|++|
T Consensus 79 ~~~~~g~~~~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred HHHHcCCCCCCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 000000 00000000001111111 1111 2345557889999765 44556655555455677777666
Q ss_pred CCch-hhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHH
Q 045458 170 RDKQ-LLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLAL 232 (1170)
Q Consensus 170 R~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 232 (1170)
.+.+ +.... ....+.|++..++.++..+++.+.+-.... ....+....|++.++|.+..+
T Consensus 158 t~~~kLl~TI-rSRc~~v~F~~l~~~~l~~~L~~il~~EGv--~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 158 TEPDKVIGTI-RSRTHHYPFRLVPPEVMRGYLERICAQEGV--PVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred CChhhhhHHH-HhheeEEEeeCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 5433 33221 222348999999999999888876533222 123345678899999987433
No 110
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.03 E-value=0.00012 Score=88.71 Aligned_cols=203 Identities=20% Similarity=0.187 Sum_probs=113.4
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHH
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQ 102 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 102 (1170)
-|...+++||.+..++.|..++..+ .-...+.++|+.|+||||+|+.+++.+-......- ........+. -..-
T Consensus 19 RP~~f~dliGq~~~v~~L~~~~~~g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~----~~~~~~~cg~-c~~C 92 (598)
T PRK09111 19 RPQTFDDLIGQEAMVRTLTNAFETG-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGD----GGPTIDLCGV-GEHC 92 (598)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCcccc----CCCccccCcc-cHHH
Confidence 3556678999999999999998754 23457889999999999999999987643321000 0000000000 0000
Q ss_pred HHHHHHH----hhcCCCccccchhhHHHHHHhh-----CCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeC-
Q 045458 103 KQLLSNL----LKLGDISIWHVEDGINIIGSRL-----RQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTR- 170 (1170)
Q Consensus 103 ~~ll~~l----~~~~~~~~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR- 170 (1170)
+.+.... ...........++..+ +.+.+ ..++-++|+|+++.. ...+.|...+....+++.+|++|.
T Consensus 93 ~~i~~g~h~Dv~e~~a~s~~gvd~IRe-Iie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte 171 (598)
T PRK09111 93 QAIMEGRHVDVLEMDAASHTGVDDIRE-IIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTE 171 (598)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHH-HHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 0010000 0000000011111111 11111 234457899999755 345566555544456777766663
Q ss_pred CchhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHH
Q 045458 171 DKQLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVL 235 (1170)
Q Consensus 171 ~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 235 (1170)
...+.... ......+++..++.++..+.+...+-.... ....+.+..|++.++|.+.-+...
T Consensus 172 ~~kll~tI-~SRcq~~~f~~l~~~el~~~L~~i~~kegi--~i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 172 IRKVPVTV-LSRCQRFDLRRIEADVLAAHLSRIAAKEGV--EVEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hhhhhHHH-HhheeEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 33333221 122348999999999999999887643322 223366788899999988655443
No 111
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.03 E-value=7.6e-05 Score=90.81 Aligned_cols=196 Identities=14% Similarity=0.204 Sum_probs=109.7
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhh---ccCCcHH
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKS---EKEGSVI 99 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~---~~~~~~~ 99 (1170)
.|....++||-+..++.|..++..+ .-.+.+.++|+.|+||||+|+.++..+-..-....+-. ...+. ..+..
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p-C~~C~~~~~~~~D-- 88 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP-CQECIENVNNSLD-- 88 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc-hhHHHHhhcCCCc--
Confidence 4556678999999999999999754 23467789999999999999999886532111000000 00000 00000
Q ss_pred HHHHHHHHHHhhcCCCccccchhhHHHHHHhh-----CCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCC-
Q 045458 100 SLQKQLLSNLLKLGDISIWHVEDGINIIGSRL-----RQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRD- 171 (1170)
Q Consensus 100 ~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~- 171 (1170)
+...........++ ++.+.+.+ .+++-++|+|+++.. ..+.++...+....+.+.+|++|..
T Consensus 89 ---------vieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~ 158 (725)
T PRK07133 89 ---------IIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEV 158 (725)
T ss_pred ---------EEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCCh
Confidence 00000000000111 11122222 245668899999754 4566666555444556666655543
Q ss_pred chhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCch-HHHHH
Q 045458 172 KQLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPL-ALKVL 235 (1170)
Q Consensus 172 ~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~l 235 (1170)
..+.... ......+++.+++.++..+.+...+-.... ....+.+..+++.++|.+- |+..+
T Consensus 159 ~KLl~TI-~SRcq~ieF~~L~~eeI~~~L~~il~kegI--~id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 159 HKIPLTI-LSRVQRFNFRRISEDEIVSRLEFILEKENI--SYEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred hhhhHHH-HhhceeEEccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3333221 222348999999999999998876533221 1223557788999988664 44433
No 112
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=0.00011 Score=86.90 Aligned_cols=193 Identities=17% Similarity=0.198 Sum_probs=106.5
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccC---c-eeEE-EecchhhccCCc
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFD---G-SSFL-ADVREKSEKEGS 97 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~---~-~~~~-~~~~~~~~~~~~ 97 (1170)
.|...++++|.+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+-..-. . .+-. .+.+........
T Consensus 12 RP~~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~ 90 (451)
T PRK06305 12 RPQTFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSL 90 (451)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCC
Confidence 45567889999999999999987532 2367889999999999999999986532200 0 0000 000000000000
Q ss_pred HHHHHHHHHHHHhhcCCCccccchhhHHHHHHh-----hCCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeC
Q 045458 98 VISLQKQLLSNLLKLGDISIWHVEDGINIIGSR-----LRQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTR 170 (1170)
Q Consensus 98 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~-----L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR 170 (1170)
. ...+ .+......++. ..+.+. ..+++-++|+|+++.. +..+.+........++..+|++|.
T Consensus 91 --d-----~~~i---~g~~~~gid~i-r~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~ 159 (451)
T PRK06305 91 --D-----VLEI---DGASHRGIEDI-RQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATT 159 (451)
T ss_pred --c-----eEEe---eccccCCHHHH-HHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeC
Confidence 0 0000 00000000111 111111 1245668899998754 334555544443345677777764
Q ss_pred Cc-hhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCch
Q 045458 171 DK-QLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPL 230 (1170)
Q Consensus 171 ~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 230 (1170)
.. .+.... ......++++.++.++..+.+...+-+.. .....+.+..++++++|.+-
T Consensus 160 ~~~kl~~tI-~sRc~~v~f~~l~~~el~~~L~~~~~~eg--~~i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 160 EIHKIPGTI-LSRCQKMHLKRIPEETIIDKLALIAKQEG--IETSREALLPIARAAQGSLR 217 (451)
T ss_pred ChHhcchHH-HHhceEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHH
Confidence 43 222211 12223799999999999998887663322 12234567889999999764
No 113
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=7.6e-05 Score=91.48 Aligned_cols=200 Identities=17% Similarity=0.146 Sum_probs=113.0
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHH
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQ 102 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 102 (1170)
.|...+++||-+..++.|..++..+ .-...+.++|..|+||||+|+.+++.+.......-. ...+. ....
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~~~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~--------~~c~~-c~~c 80 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIAEG-RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKG--------RPCGT-CEMC 80 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC--------CCCcc-CHHH
Confidence 3555678999999999999888754 234667899999999999999999876321100000 00000 0111
Q ss_pred HHHHHHHhh----cCCCccccchhhHHHHHHhh-----CCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCC
Q 045458 103 KQLLSNLLK----LGDISIWHVEDGINIIGSRL-----RQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRD 171 (1170)
Q Consensus 103 ~~ll~~l~~----~~~~~~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~ 171 (1170)
..+...... .........++. ..+.+.+ ..++-++|+|+++.. +..+.|...+....+.+.+|++|.+
T Consensus 81 ~~i~~~~~~d~~~i~~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~ 159 (585)
T PRK14950 81 RAIAEGSAVDVIEMDAASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTE 159 (585)
T ss_pred HHHhcCCCCeEEEEeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 111110000 000000111111 1111221 235668999999754 4466665554444466777776654
Q ss_pred ch-hhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHHH
Q 045458 172 KQ-LLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVLG 236 (1170)
Q Consensus 172 ~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~ 236 (1170)
.+ +.... ......+++..++.++..+.+.+.+...... ...+.+..+++.++|.+..+....
T Consensus 160 ~~kll~tI-~SR~~~i~f~~l~~~el~~~L~~~a~~egl~--i~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 160 VHKVPATI-LSRCQRFDFHRHSVADMAAHLRKIAAAEGIN--LEPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred hhhhhHHH-HhccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 32 22211 1222478999999999999888776443221 233567889999999886555443
No 114
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.99 E-value=0.00013 Score=77.57 Aligned_cols=183 Identities=17% Similarity=0.224 Sum_probs=97.3
Q ss_pred Ccc-ccchhh--HHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCc--eeEEEecchhhccCCcHHHHH
Q 045458 28 KEL-VGIESR--LEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDG--SSFLADVREKSEKEGSVISLQ 102 (1170)
Q Consensus 28 ~~~-vGr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~l~ 102 (1170)
++| +|-..+ .+...............+.|||..|+|||+|.+++++.+....+. ++++. . ....
T Consensus 8 dnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~-~----------~~f~ 76 (219)
T PF00308_consen 8 DNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS-A----------EEFI 76 (219)
T ss_dssp CCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE-H----------HHHH
T ss_pred ccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec-H----------HHHH
Confidence 445 465333 233334434333334567899999999999999999987654432 33443 1 3334
Q ss_pred HHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH---HHHH-HhhcCcC-CCCCCcEEEEEeCCchhh-h
Q 045458 103 KQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV---EQLQ-SLAGKRD-WFGPGSRILITTRDKQLL-V 176 (1170)
Q Consensus 103 ~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~---~~l~-~l~~~~~-~~~~gsrIIiTTR~~~v~-~ 176 (1170)
..+...+.. .....+++.+++-. +|++||++.. ..|+ .+..... ....|.+||+|++..... .
T Consensus 77 ~~~~~~~~~----------~~~~~~~~~~~~~D-lL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~ 145 (219)
T PF00308_consen 77 REFADALRD----------GEIEEFKDRLRSAD-LLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELS 145 (219)
T ss_dssp HHHHHHHHT----------TSHHHHHHHHCTSS-EEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTT
T ss_pred HHHHHHHHc----------ccchhhhhhhhcCC-EEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcccc
Confidence 444444331 22345666666444 7789999653 2122 2211111 113577999999654321 1
Q ss_pred hh------CCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHH
Q 045458 177 AH------EVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKV 234 (1170)
Q Consensus 177 ~~------~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 234 (1170)
.. ......++++++++.++..+++...|-...-. -.++++.-+++.+.+..-.+.-
T Consensus 146 ~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~--l~~~v~~~l~~~~~~~~r~L~~ 207 (219)
T PF00308_consen 146 GLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE--LPEEVIEYLARRFRRDVRELEG 207 (219)
T ss_dssp TS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHHH
T ss_pred ccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC--CcHHHHHHHHHhhcCCHHHHHH
Confidence 00 01112389999999999999999888533322 2335556666666555444433
No 115
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.99 E-value=0.00011 Score=92.71 Aligned_cols=158 Identities=15% Similarity=0.160 Sum_probs=90.0
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhcccc------CceeEEEecchhhccCC
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEF------DGSSFLADVREKSEKEG 96 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~ 96 (1170)
.|...+.++||+.+++++.+.|... ...-+.++|.+|+|||++|+.+++++...- ...+|..++.......
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~- 253 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGT- 253 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhc-
Confidence 3445567999999999999988754 234567999999999999999999864321 2233333221110000
Q ss_pred cHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhh-CCCeEEEEEeCCCCHH-----------HHHHhhcCcCCCCCC-c
Q 045458 97 SVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRL-RQKKVLLIIDDVADVE-----------QLQSLAGKRDWFGPG-S 163 (1170)
Q Consensus 97 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L-~~k~~LlVLDdv~~~~-----------~l~~l~~~~~~~~~g-s 163 (1170)
......++....+.+.+ +.++.+|++|+++... .-+.+.+.+ ..| -
T Consensus 254 ------------------~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l---~~g~i 312 (731)
T TIGR02639 254 ------------------KYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL---SSGKL 312 (731)
T ss_pred ------------------cccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH---hCCCe
Confidence 00012222222223222 2467899999986331 122233332 233 3
Q ss_pred EEEEEeCCchhhh----hhC-CCCccEEECCCCChHHHHHHHHHhh
Q 045458 164 RILITTRDKQLLV----AHE-VDEEHILNLDVLNNDEALQLFSMKA 204 (1170)
Q Consensus 164 rIIiTTR~~~v~~----~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a 204 (1170)
++|-+|....... ... ......++++.++.++..+++....
T Consensus 313 ~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 313 RCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred EEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 5565555422111 000 1112379999999999999998544
No 116
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=8e-05 Score=88.27 Aligned_cols=199 Identities=17% Similarity=0.160 Sum_probs=113.0
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccc-cCc--eeEEE-ecchhhc-cCCc
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE-FDG--SSFLA-DVREKSE-KEGS 97 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~-f~~--~~~~~-~~~~~~~-~~~~ 97 (1170)
.|...+++||-+...+.|...+..+ .-.++..++|..|+||||+|+.+++.+-.. ... .|... ..+.... .+..
T Consensus 9 RP~~fdeiiGqe~v~~~L~~~I~~g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d 87 (535)
T PRK08451 9 RPKHFDELIGQESVSKTLSLALDNN-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID 87 (535)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe
Confidence 3556678999999999999998754 234577899999999999999998865211 000 00000 0000000 0000
Q ss_pred HHHHHHHHHHHHhhcCCCccccchhhHHHHHH----hhCCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCC
Q 045458 98 VISLQKQLLSNLLKLGDISIWHVEDGINIIGS----RLRQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRD 171 (1170)
Q Consensus 98 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~----~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~ 171 (1170)
+...........++..+.+.. -..+++-++|+|+++.. +..++++..+....+.+++|++|.+
T Consensus 88 -----------v~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd 156 (535)
T PRK08451 88 -----------IIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTD 156 (535)
T ss_pred -----------EEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECC
Confidence 000000000001111111111 01145668899999754 4466666555555677888888876
Q ss_pred chhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHH
Q 045458 172 KQLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVL 235 (1170)
Q Consensus 172 ~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 235 (1170)
..-....-......+++.+++.++..+.+...+-..... ...+.+..|++.++|.+--+..+
T Consensus 157 ~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~--i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 157 PLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS--YEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred hhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHHH
Confidence 432111111223489999999999999988766433222 23456788999999988544443
No 117
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.98 E-value=5.7e-05 Score=92.65 Aligned_cols=208 Identities=18% Similarity=0.146 Sum_probs=105.9
Q ss_pred CCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhcc--cc---CceeEEE-ecchhhccCCc
Q 045458 24 PETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSY--EF---DGSSFLA-DVREKSEKEGS 97 (1170)
Q Consensus 24 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~--~f---~~~~~~~-~~~~~~~~~~~ 97 (1170)
|...+.++|++..++.+.+.+.. .....+.|+|++|+||||+|+.+++..+. .+ ...-|+. +..... . .
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~--~-d 224 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR--W-D 224 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc--C-C
Confidence 55567899999999988877753 33467999999999999999999875432 11 1122332 111110 0 0
Q ss_pred HHHHHHHHHH------------HHhh--cCC----------C------cccc-chhhHHHHHHhhCCCeEEEEEeCCCCH
Q 045458 98 VISLQKQLLS------------NLLK--LGD----------I------SIWH-VEDGINIIGSRLRQKKVLLIIDDVADV 146 (1170)
Q Consensus 98 ~~~l~~~ll~------------~l~~--~~~----------~------~~~~-~~~~~~~i~~~L~~k~~LlVLDdv~~~ 146 (1170)
...+...++. .+.. ... . .... ....+..+.+.+.++++.++-|+.|..
T Consensus 225 ~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~ 304 (615)
T TIGR02903 225 PREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPD 304 (615)
T ss_pred HHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccC
Confidence 0111111110 0000 000 0 0000 112345555666666666665554432
Q ss_pred --HHHHHhhcCcCCCCCCcEEEE--EeCCchhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHH
Q 045458 147 --EQLQSLAGKRDWFGPGSRILI--TTRDKQLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVL 222 (1170)
Q Consensus 147 --~~l~~l~~~~~~~~~gsrIIi--TTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~ 222 (1170)
..|+.+...+....+...|+| ||++.......-......+.+.+++.+|.++++...+-..... -..+....|.
T Consensus 305 ~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~--ls~eal~~L~ 382 (615)
T TIGR02903 305 DPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVH--LAAGVEELIA 382 (615)
T ss_pred CcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHH
Confidence 224444333332333344444 5665432221111222367899999999999999876432111 1234455555
Q ss_pred HHhCCCchHHHHHHHh
Q 045458 223 EYAGGLPLALKVLGSF 238 (1170)
Q Consensus 223 ~~~~GlPLal~~l~~~ 238 (1170)
+++..-+-|+..++..
T Consensus 383 ~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 383 RYTIEGRKAVNILADV 398 (615)
T ss_pred HCCCcHHHHHHHHHHH
Confidence 6655445555555443
No 118
>PRK05642 DNA replication initiation factor; Validated
Probab=97.98 E-value=0.00024 Score=76.60 Aligned_cols=153 Identities=16% Similarity=0.221 Sum_probs=88.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRL 131 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 131 (1170)
..+.|||..|+|||+||+++++.+..+-..++|+. .. ++... ...+.+.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~-~~----------~~~~~-------------------~~~~~~~~ 95 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP-LA----------ELLDR-------------------GPELLDNL 95 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee-HH----------HHHhh-------------------hHHHHHhh
Confidence 67899999999999999999987654433455554 11 11110 01123333
Q ss_pred CCCeEEEEEeCCCCH---HHHHH-hhcCcCC-CCCCcEEEEEeCCchhhhhhC-------CCCccEEECCCCChHHHHHH
Q 045458 132 RQKKVLLIIDDVADV---EQLQS-LAGKRDW-FGPGSRILITTRDKQLLVAHE-------VDEEHILNLDVLNNDEALQL 199 (1170)
Q Consensus 132 ~~k~~LlVLDdv~~~---~~l~~-l~~~~~~-~~~gsrIIiTTR~~~v~~~~~-------~~~~~~~~l~~L~~~ea~~L 199 (1170)
++-. +||+||++.. .+|+. +...... ...|.+||+|++...-.-... .....++++++++.++..+.
T Consensus 96 ~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~i 174 (234)
T PRK05642 96 EQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRA 174 (234)
T ss_pred hhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHH
Confidence 3333 6789999632 23322 2222211 135678999887643211100 01113789999999999999
Q ss_pred HHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHHHH
Q 045458 200 FSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVLGS 237 (1170)
Q Consensus 200 f~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~ 237 (1170)
+..++....- .-..+...-+++++.|..-++..+-.
T Consensus 175 l~~ka~~~~~--~l~~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 175 LQLRASRRGL--HLTDEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred HHHHHHHcCC--CCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 9866643321 12246667777777776655544433
No 119
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.97 E-value=5.5e-05 Score=87.93 Aligned_cols=158 Identities=16% Similarity=0.255 Sum_probs=91.9
Q ss_pred CccCccccchhhHHHHHHHHcC-----------CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhc
Q 045458 25 ETIKELVGIESRLEKIRFLMGT-----------GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSE 93 (1170)
Q Consensus 25 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 93 (1170)
..-.++.|.+..+++|.+.+.. +-...+-|.++|++|+|||++|+++++.....|- .+. ..
T Consensus 180 ~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~-~s---- 251 (438)
T PTZ00361 180 ESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFL---RVV-GS---- 251 (438)
T ss_pred CCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEe-cc----
Confidence 3446788999999999887642 1123466889999999999999999998765431 111 00
Q ss_pred cCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH----------------HHHHhhcCcC
Q 045458 94 KEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVE----------------QLQSLAGKRD 157 (1170)
Q Consensus 94 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~----------------~l~~l~~~~~ 157 (1170)
.+....... ........+.....+.+.+|+||+++... .+..+.....
T Consensus 252 ------eL~~k~~Ge----------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ld 315 (438)
T PTZ00361 252 ------ELIQKYLGD----------GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLD 315 (438)
T ss_pred ------hhhhhhcch----------HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHh
Confidence 010000000 00011112222234577888999875321 1122222222
Q ss_pred CC--CCCcEEEEEeCCchhhhhhCC---CCccEEECCCCChHHHHHHHHHhhcC
Q 045458 158 WF--GPGSRILITTRDKQLLVAHEV---DEEHILNLDVLNNDEALQLFSMKAFK 206 (1170)
Q Consensus 158 ~~--~~gsrIIiTTR~~~v~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~ 206 (1170)
.+ ..+.+||+||.........-. .-.+.++++..+.++..++|..++.+
T Consensus 316 g~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 316 GFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred hhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 11 245688888876554433221 11248999999999999999987643
No 120
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.97 E-value=6.8e-05 Score=82.55 Aligned_cols=156 Identities=14% Similarity=0.148 Sum_probs=83.2
Q ss_pred CccccchhhHHHHHHHHcC-------------CCCCeEEEEEEeCCCccHHHHHHHHHhhhccc--cCceeEEEecchhh
Q 045458 28 KELVGIESRLEKIRFLMGT-------------GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE--FDGSSFLADVREKS 92 (1170)
Q Consensus 28 ~~~vGr~~~~~~l~~~L~~-------------~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~ 92 (1170)
..+||.+...++|.+.... ..+...-+.++|++|+||||+|+.+++.+... .....++. +..
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~~~-- 82 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-VER-- 82 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-ecH--
Confidence 4588888777766543211 11345678899999999999999998865321 11112222 110
Q ss_pred ccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCC----------HHHHHHhhcCcCCCCCC
Q 045458 93 EKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVAD----------VEQLQSLAGKRDWFGPG 162 (1170)
Q Consensus 93 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~----------~~~l~~l~~~~~~~~~g 162 (1170)
.. +....... ......+.+.+. ..-+|++|+++. .+.++.+..........
T Consensus 83 ------~~----l~~~~~g~------~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~ 143 (261)
T TIGR02881 83 ------AD----LVGEYIGH------TAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNE 143 (261)
T ss_pred ------HH----hhhhhccc------hHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCC
Confidence 01 11111000 001111222221 124889999975 23456665554433344
Q ss_pred cEEEEEeCCchhhh------hhCCCCccEEECCCCChHHHHHHHHHhhc
Q 045458 163 SRILITTRDKQLLV------AHEVDEEHILNLDVLNNDEALQLFSMKAF 205 (1170)
Q Consensus 163 srIIiTTR~~~v~~------~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 205 (1170)
..+|+++....... .....-...++++.++.+|..+++.+.+.
T Consensus 144 ~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 144 FVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred EEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 45666655433211 11111123689999999999999987764
No 121
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.97 E-value=0.00015 Score=85.47 Aligned_cols=169 Identities=17% Similarity=0.174 Sum_probs=99.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhccccC-c-eeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHH
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSYEFD-G-SSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIG 128 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~-~-~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~ 128 (1170)
..-+.|+|..|+|||+|++++++.+..... . ++++. . ..+...+...+... ....+.++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-~----------~~f~~~~~~~l~~~--------~~~~~~~~ 201 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-G----------DEFARKAVDILQKT--------HKEIEQFK 201 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-H----------HHHHHHHHHHHHHh--------hhHHHHHH
Confidence 345889999999999999999997654322 2 23333 1 34444454444310 02233455
Q ss_pred HhhCCCeEEEEEeCCCCHH----HHHHhhcCcCC-CCCCcEEEEEeCCch-hhhhhC------CCCccEEECCCCChHHH
Q 045458 129 SRLRQKKVLLIIDDVADVE----QLQSLAGKRDW-FGPGSRILITTRDKQ-LLVAHE------VDEEHILNLDVLNNDEA 196 (1170)
Q Consensus 129 ~~L~~k~~LlVLDdv~~~~----~l~~l~~~~~~-~~~gsrIIiTTR~~~-v~~~~~------~~~~~~~~l~~L~~~ea 196 (1170)
+.++. .-+|||||+.... ..+.+...+.. ...|..||+|+.... ...... ....-.+++++++.++.
T Consensus 202 ~~~~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r 280 (450)
T PRK14087 202 NEICQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTA 280 (450)
T ss_pred HHhcc-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHH
Confidence 55553 4478899995432 12233222211 134557888876442 111110 11123788999999999
Q ss_pred HHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHHHHhh
Q 045458 197 LQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVLGSFL 239 (1170)
Q Consensus 197 ~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L 239 (1170)
.+++.+++-.......-.++...-|++.++|.|-.+.-+...+
T Consensus 281 ~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 281 TAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 9999988743221112345778889999999998877665433
No 122
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00022 Score=84.74 Aligned_cols=195 Identities=14% Similarity=0.119 Sum_probs=109.0
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccc-----cCceeEEEecchhhc--cC
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE-----FDGSSFLADVREKSE--KE 95 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~-----f~~~~~~~~~~~~~~--~~ 95 (1170)
.|....+++|-+..++.|..++..+. -.+.+.++|+.|+||||+|+.++..+... .++.. -.+...... ..
T Consensus 11 RP~~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~-c~nc~~i~~g~~~ 88 (486)
T PRK14953 11 RPKFFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGK-CENCVEIDKGSFP 88 (486)
T ss_pred CCCcHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCc-cHHHHHHhcCCCC
Confidence 34556789999999999999997642 34667889999999999999998865321 00000 000000000 00
Q ss_pred CcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhh-----CCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEE
Q 045458 96 GSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRL-----RQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILIT 168 (1170)
Q Consensus 96 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiT 168 (1170)
+. . .+ ........+ .++.+.+.. .+++-++|+|+++.. +..+.+...+....+...+|++
T Consensus 89 d~-~--------ei---daas~~gvd-~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~ 155 (486)
T PRK14953 89 DL-I--------EI---DAASNRGID-DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILC 155 (486)
T ss_pred cE-E--------EE---eCccCCCHH-HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 00 0 00 000000011 111222222 245669999999754 3455555544444456666666
Q ss_pred eCCc-hhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHH
Q 045458 169 TRDK-QLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVL 235 (1170)
Q Consensus 169 TR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 235 (1170)
|.+. .+.... ......+++.+++.++..+.+...+-.... ....+.+..+++.++|.+..+..+
T Consensus 156 tt~~~kl~~tI-~SRc~~i~f~~ls~~el~~~L~~i~k~egi--~id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 156 TTEYDKIPPTI-LSRCQRFIFSKPTKEQIKEYLKRICNEEKI--EYEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred ECCHHHHHHHH-HHhceEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 6433 322221 112237999999999999988877643222 223356777888999977654443
No 123
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.93 E-value=3.9e-07 Score=99.58 Aligned_cols=229 Identities=20% Similarity=0.231 Sum_probs=124.1
Q ss_pred CCCCCCCcEEEcCCCCCCCcCCC--C-CCCCCccEEEeeccCCccccc--ccccCCCCccEEEeeCCCCCCcc--Cccc-
Q 045458 465 IKSLNMLKVMKVSYSQSLIKIPD--F-TGVPNLEKLYLEGCTRLREIH--PSLLLHSKLVILNLTGCTSLATL--PGKI- 536 (1170)
Q Consensus 465 l~~l~~L~~L~Ls~~~~l~~~~~--~-~~l~~L~~L~L~~~~~l~~~~--~~i~~l~~L~~L~L~~c~~l~~l--p~~~- 536 (1170)
..+++++++|.+.++.++++..- + ..+++|++|++..|.+++... .-...+++|++|+++.|..++.- ....
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~r 239 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQR 239 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhc
Confidence 44677777777777775544321 2 347788888888877665422 12335778888888888766651 1111
Q ss_pred cCCcccEEEecCCCCCCc--cccccCCCCCCcEEEecCcc-CCccC--cchhcCCCCCEEeccCCCCCCcCc--cccCCC
Q 045458 537 FMKSVKKLVLSGCSKLKK--FPKIVGNMECLSKLLLDGTA-IGELP--LSIELLSKLVSLDLNNCKNFKNLP--VTISSL 609 (1170)
Q Consensus 537 ~l~~L~~L~L~~~~~~~~--l~~~l~~l~~L~~L~L~~~~-i~~l~--~~i~~l~~L~~L~L~~~~~l~~lp--~~l~~l 609 (1170)
+++.|+.+.+.||..... +-..-+.+.-+.++++..+. +++.. ..-..+..|+.|+.++|......+ ....+.
T Consensus 240 G~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~ 319 (483)
T KOG4341|consen 240 GCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHC 319 (483)
T ss_pred cchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCC
Confidence 156677777777754331 11122233334445544442 22221 112456778888888877655432 123456
Q ss_pred CcccEEEeeCCCCCCCc--chhhcCCcccCeEeccCcCCC---ccCccccCCCCCCEEeccCCcCCccc-----cccCCC
Q 045458 610 KCLRSLVLSGCSKLKKF--PEIVESMEDLSELFLDGTSIT---EVPSSIELLTGLNVLNLNDCKNLVRI-----PDSING 679 (1170)
Q Consensus 610 ~~L~~L~L~~~~~~~~~--p~~~~~l~~L~~L~l~~~~l~---~lp~~i~~l~~L~~L~L~~~~~l~~l-----p~~l~~ 679 (1170)
.+|+.|.+++|...... ...-.+.+.|+.+++.++... ++.+.-.+++.|+.|.+++|...+.. ...-..
T Consensus 320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~ 399 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS 399 (483)
T ss_pred CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence 78888888888765432 222334566666666655443 22233345556666666666544332 222233
Q ss_pred CCCCCEEEeeCcCC
Q 045458 680 LKSLQSLNLSGCFK 693 (1170)
Q Consensus 680 l~~L~~L~L~~c~~ 693 (1170)
+..|..+.+++|+.
T Consensus 400 ~~~l~~lEL~n~p~ 413 (483)
T KOG4341|consen 400 LEGLEVLELDNCPL 413 (483)
T ss_pred ccccceeeecCCCC
Confidence 44455555555543
No 124
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=3.8e-06 Score=87.77 Aligned_cols=229 Identities=21% Similarity=0.204 Sum_probs=131.1
Q ss_pred CcccEEEeeCCCCCC--CcchhhcCCcccCeEeccCcCCC---ccCccccCCCCCCEEeccCCcCCccccccCCCCCCCC
Q 045458 610 KCLRSLVLSGCSKLK--KFPEIVESMEDLSELFLDGTSIT---EVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQ 684 (1170)
Q Consensus 610 ~~L~~L~L~~~~~~~--~~p~~~~~l~~L~~L~l~~~~l~---~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~ 684 (1170)
..++.|.+.+|.+-. .....-..+..++++++.+|.+. ++...+.++|.|+.|+++.|+.-..+-..-..+.+|+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 344455555543322 22333345566777777777776 3444566777777777776654332211112345677
Q ss_pred EEEeeCcCCC-CCCccccCCCCCCcEEEccCccCCCCC---ccccC-CCCCcEEEecCCCCCCCCCCcccCccccccccc
Q 045458 685 SLNLSGCFKL-ENVPETLGQVESLEELHISGTAIRQPP---SGIFH-MKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRS 759 (1170)
Q Consensus 685 ~L~L~~c~~l-~~l~~~l~~l~~L~~L~L~~~~i~~lp---~~l~~-l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~ 759 (1170)
+|.|.|...- ......+..+|.+++|+++.|++..+- ..+.. -+.+++|.+.+|.... |..
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~----w~~---------- 190 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQL----WLN---------- 190 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHH----HHH----------
Confidence 7777665321 223334445566666666666444221 11111 1244445444443110 100
Q ss_pred CCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCcccc--hhhhcCCCCCEeeccCccCCC
Q 045458 760 LDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVSLP--ASISRLSKLECLNLNGCKKLQ 837 (1170)
Q Consensus 760 ~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~c~~L~ 837 (1170)
...--..+|++..+.+..|++.+..-......++.+-.|+|+.|++.++- +.+..+++|..|.+.++|...
T Consensus 191 -------~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 191 -------KNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred -------HHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 00112346788999999998865555556777888999999999998654 357889999999999999887
Q ss_pred cCCCCCcccceeeccCCcCCcccC
Q 045458 838 SLPPLPARMRIASVNGCASLETLS 861 (1170)
Q Consensus 838 ~lp~lp~sL~~L~i~~C~~L~~l~ 861 (1170)
.+.. .-=+.|-|...++++.+.
T Consensus 264 ~l~~--~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 264 PLRG--GERRFLLIARLTKVQVLN 285 (418)
T ss_pred cccC--CcceEEEEeeccceEEec
Confidence 7754 122345555555555443
No 125
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.92 E-value=0.00013 Score=79.64 Aligned_cols=170 Identities=18% Similarity=0.235 Sum_probs=102.0
Q ss_pred ccCccccchhhHHHHHHHHcCCCCCe-EEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHH
Q 045458 26 TIKELVGIESRLEKIRFLMGTGSSDV-RMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQ 104 (1170)
Q Consensus 26 ~~~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (1170)
..+.+-+|+.++..+..++...+..+ ..|.|+|-+|.|||.+.+++.+....+ .+|+.. .+.. ....+..+
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~---~vw~n~-~ecf----t~~~lle~ 75 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLE---NVWLNC-VECF----TYAILLEK 75 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCc---ceeeeh-HHhc----cHHHHHHH
Confidence 45678899999999999998765543 456999999999999999999877333 567763 3322 22556667
Q ss_pred HHHHHh-hcCCCcc-----ccchhhHHHHHH--hhC--CCeEEEEEeCCCCHHHHHHh-----hcCcCCCCCCcEEEEEe
Q 045458 105 LLSNLL-KLGDISI-----WHVEDGINIIGS--RLR--QKKVLLIIDDVADVEQLQSL-----AGKRDWFGPGSRILITT 169 (1170)
Q Consensus 105 ll~~l~-~~~~~~~-----~~~~~~~~~i~~--~L~--~k~~LlVLDdv~~~~~l~~l-----~~~~~~~~~gsrIIiTT 169 (1170)
|+.+.. ..+.... .+..+.+..+++ ... ++.++||||+++...+.++. .....-......+|+++
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils 155 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILS 155 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEe
Confidence 777663 1111111 112222333333 222 46899999999876553221 11100011223445554
Q ss_pred CCchhhhh---hCCCCccEEECCCCChHHHHHHHHHh
Q 045458 170 RDKQLLVA---HEVDEEHILNLDVLNNDEALQLFSMK 203 (1170)
Q Consensus 170 R~~~v~~~---~~~~~~~~~~l~~L~~~ea~~Lf~~~ 203 (1170)
-....... .+.....++..+..+.+|..+++.+.
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 43332222 23333346788999999999999753
No 126
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.92 E-value=0.00024 Score=83.83 Aligned_cols=160 Identities=16% Similarity=0.249 Sum_probs=90.9
Q ss_pred ccCccccchhhHHHHHHHHcC-----------CCCCeEEEEEEeCCCccHHHHHHHHHhhhcccc-----CceeEEEecc
Q 045458 26 TIKELVGIESRLEKIRFLMGT-----------GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEF-----DGSSFLADVR 89 (1170)
Q Consensus 26 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f-----~~~~~~~~~~ 89 (1170)
.-+++.|.+..++++.+.+.. +-...+-|.++|++|+|||++|+++++.+...+ ....|+. +.
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v~ 258 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-IK 258 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-cc
Confidence 346788999999999876532 112346689999999999999999999875542 2233432 22
Q ss_pred hhh--c-cCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHh-hCCCeEEEEEeCCCCHH---------H-----HHH
Q 045458 90 EKS--E-KEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSR-LRQKKVLLIIDDVADVE---------Q-----LQS 151 (1170)
Q Consensus 90 ~~~--~-~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~-L~~k~~LlVLDdv~~~~---------~-----l~~ 151 (1170)
... . ..+......+. ..+..++. -.+++++|+||+++..- + +..
T Consensus 259 ~~eLl~kyvGete~~ir~------------------iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~ 320 (512)
T TIGR03689 259 GPELLNKYVGETERQIRL------------------IFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQ 320 (512)
T ss_pred chhhcccccchHHHHHHH------------------HHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHH
Confidence 110 0 00000000111 11111111 13578999999997431 1 223
Q ss_pred hhcCcCCCC--CCcEEEEEeCCchhhhhhCC---CCccEEECCCCChHHHHHHHHHhh
Q 045458 152 LAGKRDWFG--PGSRILITTRDKQLLVAHEV---DEEHILNLDVLNNDEALQLFSMKA 204 (1170)
Q Consensus 152 l~~~~~~~~--~gsrIIiTTR~~~v~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a 204 (1170)
+...++... .+..||.||.........-. .-...++++..+.+++.++|..+.
T Consensus 321 LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 321 LLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred HHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 333332221 34556666655543322211 112379999999999999999876
No 127
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00017 Score=88.13 Aligned_cols=201 Identities=18% Similarity=0.155 Sum_probs=110.6
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHH
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQ 102 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 102 (1170)
.|.....++|.+...+.|..++..+. -.+.+.++|..|+||||+|+.+++.+-....... . ....+. -..-
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-~------~~~Cg~-C~~C 81 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-T------PEPCGK-CELC 81 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-C------CCCCcc-cHHH
Confidence 34556789999999999999988642 2357789999999999999999987543210000 0 000000 0111
Q ss_pred HHHHHHHh----hcCCCccccchhhHHHHHHh----hCCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCCc
Q 045458 103 KQLLSNLL----KLGDISIWHVEDGINIIGSR----LRQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRDK 172 (1170)
Q Consensus 103 ~~ll~~l~----~~~~~~~~~~~~~~~~i~~~----L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~ 172 (1170)
+.+..... ..........+...+.+... ..+++-++|+|+++.. +..+.|...+..-...+.+|++|.+.
T Consensus 82 ~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~ 161 (620)
T PRK14948 82 RAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDP 161 (620)
T ss_pred HHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCCh
Confidence 11110000 00000000111111111111 1245568899999854 44666665554434556666666544
Q ss_pred h-hhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHH
Q 045458 173 Q-LLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVL 235 (1170)
Q Consensus 173 ~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 235 (1170)
. +.... ......+++..++.++..+.+.+.+-..... ...+.+..++++++|.+..+..+
T Consensus 162 ~~llpTI-rSRc~~~~f~~l~~~ei~~~L~~ia~kegi~--is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 162 QRVLPTI-ISRCQRFDFRRIPLEAMVQHLSEIAEKESIE--IEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred hhhhHHH-HhheeEEEecCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 3 22221 2223478899999999888888766432211 22355788999999987655443
No 128
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.90 E-value=0.00018 Score=91.34 Aligned_cols=158 Identities=11% Similarity=0.100 Sum_probs=89.2
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhcccc------CceeEEEecchhhccCC
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEF------DGSSFLADVREKSEKEG 96 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~ 96 (1170)
.|...+.+|||+.++.++.+.|.... ..-+.++|.+|+||||+|+.+++++.... ...+|..++........
T Consensus 182 r~~~ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~ 259 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGAS 259 (852)
T ss_pred cCCCCCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccc
Confidence 45556789999999999998886532 34567999999999999999999874331 12233222221110000
Q ss_pred cHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhh--CCCeEEEEEeCCCCHH-------HHH---HhhcCcCCCCCCcE
Q 045458 97 SVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRL--RQKKVLLIIDDVADVE-------QLQ---SLAGKRDWFGPGSR 164 (1170)
Q Consensus 97 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L--~~k~~LlVLDdv~~~~-------~l~---~l~~~~~~~~~gsr 164 (1170)
. ....++....+.+.+ .+++++|++|+++... +.+ .+.+.+. ...-+
T Consensus 260 ~-------------------~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~ 318 (852)
T TIGR03345 260 V-------------------KGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELR 318 (852)
T ss_pred c-------------------chHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeE
Confidence 0 001111111111111 2478999999985431 111 2333322 12356
Q ss_pred EEEEeCCchhhhhhC-----CCCccEEECCCCChHHHHHHHHHh
Q 045458 165 ILITTRDKQLLVAHE-----VDEEHILNLDVLNNDEALQLFSMK 203 (1170)
Q Consensus 165 IIiTTR~~~v~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~ 203 (1170)
+|-||.......... ....+.++|+.++.+++.+++...
T Consensus 319 ~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 319 TIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred EEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 677776532211111 112248999999999999997543
No 129
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.90 E-value=0.00021 Score=82.65 Aligned_cols=178 Identities=16% Similarity=0.222 Sum_probs=99.9
Q ss_pred CCccCccccchhhHHHHHHHHcC-----------CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhh
Q 045458 24 PETIKELVGIESRLEKIRFLMGT-----------GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKS 92 (1170)
Q Consensus 24 ~~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~ 92 (1170)
...-.++.|.+...++|.+.+.. +-...+-|.++|++|.|||++|+++++.....| +....
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~f-----i~i~~--- 212 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATF-----IRVVG--- 212 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE-----EEEeh---
Confidence 33346799999999988876531 113357799999999999999999998765432 21100
Q ss_pred ccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH----------------HHHHhhcCc
Q 045458 93 EKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVE----------------QLQSLAGKR 156 (1170)
Q Consensus 93 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~----------------~l~~l~~~~ 156 (1170)
..+......+ ......+.+.......+.+|++|+++... .+..+....
T Consensus 213 ------s~l~~k~~ge----------~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~l 276 (398)
T PTZ00454 213 ------SEFVQKYLGE----------GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQM 276 (398)
T ss_pred ------HHHHHHhcch----------hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHh
Confidence 0111110000 00111122233334678999999986431 122232222
Q ss_pred CCC--CCCcEEEEEeCCchhhhhhCC---CCccEEECCCCChHHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHHhCCCc
Q 045458 157 DWF--GPGSRILITTRDKQLLVAHEV---DEEHILNLDVLNNDEALQLFSMKAFKTHQP-VGEYVELSERVLEYAGGLP 229 (1170)
Q Consensus 157 ~~~--~~gsrIIiTTR~~~v~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~GlP 229 (1170)
..+ ..+..||+||.........-. .-...++++..+.++..++|..+.-+.... .-+ ..++++.+.|.-
T Consensus 277 d~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 277 DGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred hccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 211 245678888876553332211 112378999999999999998766332211 112 345566666654
No 130
>PLN03150 hypothetical protein; Provisional
Probab=97.90 E-value=2.5e-05 Score=96.70 Aligned_cols=105 Identities=29% Similarity=0.379 Sum_probs=49.3
Q ss_pred ccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCC-ccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeC
Q 045458 612 LRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSIT-EVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSG 690 (1170)
Q Consensus 612 L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~ 690 (1170)
++.|+|++|.....+|..+..+++|+.|++++|.+. .+|..++.+++|+.|+|++|.....+|..++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 334444444444444444444444444444444443 3444444555555555555544444555555555555555555
Q ss_pred cCCCCCCccccCCC-CCCcEEEccCcc
Q 045458 691 CFKLENVPETLGQV-ESLEELHISGTA 716 (1170)
Q Consensus 691 c~~l~~l~~~l~~l-~~L~~L~L~~~~ 716 (1170)
|.....+|..++.+ .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 54444444444332 234445555443
No 131
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00066 Score=83.07 Aligned_cols=201 Identities=18% Similarity=0.175 Sum_probs=108.2
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHH
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQ 102 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 102 (1170)
.|...+++||-+...+.|..++..+ .-.+.+.++|+.|+||||+|+.++..+-......-. ........-..+.
T Consensus 12 RP~~f~~viGq~~~~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~-----~~Cg~C~sC~~~~ 85 (614)
T PRK14971 12 RPSTFESVVGQEALTTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADG-----EACNECESCVAFN 85 (614)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCC-----CCCCcchHHHHHh
Confidence 3455678999999999999998753 234668899999999999999998865321100000 0000000000000
Q ss_pred HHHHHHHhhcCCCccccchhhHHHHHHh----hCCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCC-chhh
Q 045458 103 KQLLSNLLKLGDISIWHVEDGINIIGSR----LRQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRD-KQLL 175 (1170)
Q Consensus 103 ~~ll~~l~~~~~~~~~~~~~~~~~i~~~----L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~-~~v~ 175 (1170)
..---.+...........++..+.+.+. ..+++-++|+|+++.. ...+.|...+....+++.+|++|.. ..+.
T Consensus 86 ~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl 165 (614)
T PRK14971 86 EQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKIL 165 (614)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhch
Confidence 0000000000000000011111111110 1234457899999765 3455665555444566776665543 3333
Q ss_pred hhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHH
Q 045458 176 VAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLAL 232 (1170)
Q Consensus 176 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 232 (1170)
... .....++++++++.++..+.+...+-.... ....+.+..|++.++|..--+
T Consensus 166 ~tI-~SRc~iv~f~~ls~~ei~~~L~~ia~~egi--~i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 166 PTI-LSRCQIFDFNRIQVADIVNHLQYVASKEGI--TAEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred HHH-HhhhheeecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 321 222348999999999999999876643322 223356788889999866533
No 132
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.85 E-value=1.1e-05 Score=66.51 Aligned_cols=59 Identities=37% Similarity=0.551 Sum_probs=51.4
Q ss_pred CCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCcccch-hhhcCCCCCEeeccCcc
Q 045458 775 YSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVSLPA-SISRLSKLECLNLNGCK 834 (1170)
Q Consensus 775 ~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~ 834 (1170)
|+|+.|++++|++. ...+..+.++++|+.|++++|+++.+|. .+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 57999999999885 3444688999999999999999998875 67999999999999986
No 133
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.84 E-value=4.5e-05 Score=80.85 Aligned_cols=194 Identities=14% Similarity=0.158 Sum_probs=117.0
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhc--cccCceeEEEecchhhccCCc-HH
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMS--YEFDGSSFLADVREKSEKEGS-VI 99 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~~~~~~~~~~~~~~~-~~ 99 (1170)
.|...++++|-+..+..|...+.. ...+....+|++|.|||+-|++++..+- +-|++++--.++.. ..|. +.
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSd---erGisvv 105 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASD---ERGISVV 105 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccc---cccccch
Confidence 355567899999999999888875 5668889999999999999999988653 33554443222211 1111 00
Q ss_pred HHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCCchhhhh
Q 045458 100 SLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRDKQLLVA 177 (1170)
Q Consensus 100 ~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~ 177 (1170)
..-..-.+++...... ....-...-=.+|||+++.. +.|.++......+...+|.|+.+..-.....
T Consensus 106 r~Kik~fakl~~~~~~-----------~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~ 174 (346)
T KOG0989|consen 106 REKIKNFAKLTVLLKR-----------SDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIR 174 (346)
T ss_pred hhhhcCHHHHhhcccc-----------ccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCCh
Confidence 0000000011000000 00000111147889999876 5588888888777888887766655432221
Q ss_pred hCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCC-chHHHH
Q 045458 178 HEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGL-PLALKV 234 (1170)
Q Consensus 178 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~ 234 (1170)
.-...-..|..++|..++..+-+...|-+...+ -..+..+.|+++++|- --|+.+
T Consensus 175 pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~--~d~~al~~I~~~S~GdLR~Ait~ 230 (346)
T KOG0989|consen 175 PLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVD--IDDDALKLIAKISDGDLRRAITT 230 (346)
T ss_pred HHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHHHHHH
Confidence 112222368999999999998888888544433 3346678888888884 334333
No 134
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.84 E-value=0.00054 Score=82.81 Aligned_cols=197 Identities=14% Similarity=0.119 Sum_probs=111.9
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccc-----cCceeEEEecchhhccCCc
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE-----FDGSSFLADVREKSEKEGS 97 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~ 97 (1170)
.|...+++||-+..++.|..++..+ .-.+.+.++|+.|+||||+|+.+++.+-.. .++. .-.+.+........
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~-~C~~C~~i~~~~~~ 88 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCG-ECSSCKSIDNDNSL 88 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCc-cchHHHHHHcCCCC
Confidence 4556678999999999999999764 234678899999999999999999865321 1100 00000000000000
Q ss_pred HHHHHHHHHHHHhhcCCCccccchhhHHHH---HH-hhCCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCC
Q 045458 98 VISLQKQLLSNLLKLGDISIWHVEDGINII---GS-RLRQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRD 171 (1170)
Q Consensus 98 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i---~~-~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~ 171 (1170)
+ +....+......++..+.+ .. -..+++-++|+|+++.. ..++.+...+....+.+.+|.+|.+
T Consensus 89 --d--------v~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte 158 (563)
T PRK06647 89 --D--------VIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTE 158 (563)
T ss_pred --C--------eEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCC
Confidence 0 0000000000111111111 10 11345668899999755 4466676665554566777766654
Q ss_pred c-hhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHH
Q 045458 172 K-QLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKV 234 (1170)
Q Consensus 172 ~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 234 (1170)
. .+.... ......+++..++.++..+.+...+...... ...+.+..|++.++|.+-.+..
T Consensus 159 ~~kL~~tI-~SRc~~~~f~~l~~~el~~~L~~i~~~egi~--id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 159 VHKLPATI-KSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK--YEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred hHHhHHHH-HHhceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 3 332221 1222379999999999999998776443322 2346677788999997754433
No 135
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.82 E-value=0.00071 Score=76.01 Aligned_cols=173 Identities=18% Similarity=0.212 Sum_probs=105.6
Q ss_pred ccCccccchhhHHHHHHHHcC--CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCc--eeEEEecchhhccCCcHHHH
Q 045458 26 TIKELVGIESRLEKIRFLMGT--GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDG--SSFLADVREKSEKEGSVISL 101 (1170)
Q Consensus 26 ~~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~l 101 (1170)
.+..++||+.++..+.+++.. +.+..+-+-|.|.+|.|||.+...++.+....... .+++.. . .-....++
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc---~--sl~~~~ai 222 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINC---T--SLTEASAI 222 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEee---c--cccchHHH
Confidence 356799999999999998764 33456788999999999999999999876654433 244431 1 11223667
Q ss_pred HHHHHHHHhhcCCCccccchhhHHHHHHhhCC--CeEEEEEeCCCCHHH--HHHhhcCcCCC-CCCcEEEEEeCCch---
Q 045458 102 QKQLLSNLLKLGDISIWHVEDGINIIGSRLRQ--KKVLLIIDDVADVEQ--LQSLAGKRDWF-GPGSRILITTRDKQ--- 173 (1170)
Q Consensus 102 ~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~--k~~LlVLDdv~~~~~--l~~l~~~~~~~-~~gsrIIiTTR~~~--- 173 (1170)
...+.+.+.......... .+....+.+...+ ..+|+|+|..|.... -+.+...+.|- -+++|+|+.---..
T Consensus 223 F~kI~~~~~q~~~s~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDl 301 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTG-MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDL 301 (529)
T ss_pred HHHHHHHHHHHhcCCchh-HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhH
Confidence 777777774333332222 3334455555544 368999999876532 11122222222 25666655432111
Q ss_pred ---hhhhhC---CCCccEEECCCCChHHHHHHHHHhh
Q 045458 174 ---LLVAHE---VDEEHILNLDVLNNDEALQLFSMKA 204 (1170)
Q Consensus 174 ---v~~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a 204 (1170)
.+.... .-....+..++.+.++-.+.+..+.
T Consensus 302 TdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl 338 (529)
T KOG2227|consen 302 TDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRL 338 (529)
T ss_pred HHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHH
Confidence 111111 1122478889999999999999887
No 136
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.82 E-value=0.00043 Score=81.74 Aligned_cols=161 Identities=18% Similarity=0.166 Sum_probs=92.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhccccC-c-eeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHH
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSYEFD-G-SSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIG 128 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~-~-~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~ 128 (1170)
..-+.|||.+|+|||+||+++++.+....+ . +.|+. . ..+..++...+... ....++
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-~----------~~f~~~~~~~~~~~----------~~~~f~ 188 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-S----------EKFLNDLVDSMKEG----------KLNEFR 188 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-H----------HHHHHHHHHHHhcc----------cHHHHH
Confidence 345899999999999999999998766543 2 33333 1 23344444443210 122344
Q ss_pred HhhCCCeEEEEEeCCCCH---HHH-HHhhcCcC-CCCCCcEEEEEeC-Cchhhhhh------CCCCccEEECCCCChHHH
Q 045458 129 SRLRQKKVLLIIDDVADV---EQL-QSLAGKRD-WFGPGSRILITTR-DKQLLVAH------EVDEEHILNLDVLNNDEA 196 (1170)
Q Consensus 129 ~~L~~k~~LlVLDdv~~~---~~l-~~l~~~~~-~~~~gsrIIiTTR-~~~v~~~~------~~~~~~~~~l~~L~~~ea 196 (1170)
+.++.+.-+|++||++.. ... +.+...+. ....|..||+||+ ++.-.... .......+++++.+.+..
T Consensus 189 ~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r 268 (440)
T PRK14088 189 EKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETR 268 (440)
T ss_pred HHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHH
Confidence 444445568999999643 111 12211111 0123557888885 33221111 011123789999999999
Q ss_pred HHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHH
Q 045458 197 LQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKV 234 (1170)
Q Consensus 197 ~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 234 (1170)
.+++.+.+-.... .-..+....|+++..|.--.+.-
T Consensus 269 ~~IL~~~~~~~~~--~l~~ev~~~Ia~~~~~~~R~L~g 304 (440)
T PRK14088 269 KKIARKMLEIEHG--ELPEEVLNFVAENVDDNLRRLRG 304 (440)
T ss_pred HHHHHHHHHhcCC--CCCHHHHHHHHhccccCHHHHHH
Confidence 9999888743222 22346677777777776544443
No 137
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=0.00067 Score=82.34 Aligned_cols=195 Identities=15% Similarity=0.136 Sum_probs=108.5
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHH
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQ 102 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 102 (1170)
.|...+++||.+...+.|..++..+. -.+.+.++|+.|+||||+|+.++..+-..-... ....+. -..-
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~---------~~pC~~-C~~C 79 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD---------GEPCNE-CEIC 79 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------CCCCCc-cHHH
Confidence 45567889999999999999987642 346778899999999999999987653211000 000000 0000
Q ss_pred HHHHHHH----hhcCCCccccchhhHHHHHHh-----hCCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCC
Q 045458 103 KQLLSNL----LKLGDISIWHVEDGINIIGSR-----LRQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRD 171 (1170)
Q Consensus 103 ~~ll~~l----~~~~~~~~~~~~~~~~~i~~~-----L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~ 171 (1170)
..+.... ...........++ +..+.+. ..+++-++|+|+++.. ..+..+...+....+...+|++|..
T Consensus 80 ~~i~~g~~~dv~eidaas~~~vd~-ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~ 158 (559)
T PRK05563 80 KAITNGSLMDVIEIDAASNNGVDE-IRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTE 158 (559)
T ss_pred HHHhcCCCCCeEEeeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 0000000 0000000001111 1112222 1345668899999855 4466666554443455666655544
Q ss_pred ch-hhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHH
Q 045458 172 KQ-LLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLAL 232 (1170)
Q Consensus 172 ~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 232 (1170)
.+ +... -......+++.+++.++..+.+...+-..... ...+.+..+++.++|.+..+
T Consensus 159 ~~ki~~t-I~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~--i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 159 PHKIPAT-ILSRCQRFDFKRISVEDIVERLKYILDKEGIE--YEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred hhhCcHH-HHhHheEEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 33 2222 11223478999999999999988776433222 22355777888888876543
No 138
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.78 E-value=0.00065 Score=75.39 Aligned_cols=169 Identities=17% Similarity=0.180 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHhhcccCCCccCccccchhhHHHHHHHHcC------------CCC-CeEEEEEEeCCCccHHHHHHHH
Q 045458 5 ESEFIEEIVNVISSKIHTEPETIKELVGIESRLEKIRFLMGT------------GSS-DVRMIGIWGMGGLGKTTLARVV 71 (1170)
Q Consensus 5 e~~~i~~i~~~i~~~l~~~~~~~~~~vGr~~~~~~l~~~L~~------------~~~-~~~vi~I~G~gGiGKTtLA~~~ 71 (1170)
|.--|+++.+++.. +++|.+...++|.++... ... ...-|.++|.+|+||||+|+.+
T Consensus 9 ~~~~~~~~~~~l~~----------~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~i 78 (284)
T TIGR02880 9 EASGITEVLDQLDR----------ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRM 78 (284)
T ss_pred hhccHHHHHHHHHH----------hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHH
Confidence 33346666665543 568888877776553211 111 1235789999999999999988
Q ss_pred Hhhhcccc--CceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH---
Q 045458 72 YDSMSYEF--DGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV--- 146 (1170)
Q Consensus 72 ~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~--- 146 (1170)
+..+...- ....|+..-. . .+...+.+. ........+++. ..-+|+||+++..
T Consensus 79 a~~l~~~g~~~~~~~v~v~~---------~----~l~~~~~g~------~~~~~~~~~~~a---~~gvL~iDEi~~L~~~ 136 (284)
T TIGR02880 79 AQILHRLGYVRKGHLVSVTR---------D----DLVGQYIGH------TAPKTKEILKRA---MGGVLFIDEAYYLYRP 136 (284)
T ss_pred HHHHHHcCCcccceEEEecH---------H----HHhHhhccc------chHHHHHHHHHc---cCcEEEEechhhhccC
Confidence 87654321 1112332100 1 122222110 001111222222 2358889999632
Q ss_pred --------HHHHHhhcCcCCCCCCcEEEEEeCCchhhhhhCCC------CccEEECCCCChHHHHHHHHHhhc
Q 045458 147 --------EQLQSLAGKRDWFGPGSRILITTRDKQLLVAHEVD------EEHILNLDVLNNDEALQLFSMKAF 205 (1170)
Q Consensus 147 --------~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~------~~~~~~l~~L~~~ea~~Lf~~~a~ 205 (1170)
+..+.+.........+.+||.++...........+ -...+++++++.+|..+++...+-
T Consensus 137 ~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 137 DNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLK 209 (284)
T ss_pred CCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHH
Confidence 22344444444334566777776543221111111 123799999999999999987763
No 139
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.75 E-value=3.6e-06 Score=99.45 Aligned_cols=33 Identities=39% Similarity=0.686 Sum_probs=20.3
Q ss_pred cCeEeccCcCCCccCccccCCCCCCEEeccCCc
Q 045458 636 LSELFLDGTSITEVPSSIELLTGLNVLNLNDCK 668 (1170)
Q Consensus 636 L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~ 668 (1170)
|+.+++.++.+...+..+..+.++..|++.++.
T Consensus 234 L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 234 LRELYLSGNRISRSPEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred HHHHhcccCccccccccccccccccccchhhcc
Confidence 666666666666665555566666666665543
No 140
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.75 E-value=0.00023 Score=91.04 Aligned_cols=153 Identities=13% Similarity=0.114 Sum_probs=86.0
Q ss_pred cCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccc-c-----CceeEEEecchhhccCCcHHH
Q 045458 27 IKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE-F-----DGSSFLADVREKSEKEGSVIS 100 (1170)
Q Consensus 27 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~-f-----~~~~~~~~~~~~~~~~~~~~~ 100 (1170)
.+.++||+.+++++.+.|.... ..-+.++|.+|+|||++|+.++.++... - ...+|..++.....
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~a------- 248 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLA------- 248 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhc-------
Confidence 3568999999999999997542 3355799999999999999999876432 1 12344332211110
Q ss_pred HHHHHHHHHhhcCCCccccchhhHHHHHH-hhCCCeEEEEEeCCCCHH---------HHHHh-hcCcCCCCCCcEEEEEe
Q 045458 101 LQKQLLSNLLKLGDISIWHVEDGINIIGS-RLRQKKVLLIIDDVADVE---------QLQSL-AGKRDWFGPGSRILITT 169 (1170)
Q Consensus 101 l~~~ll~~l~~~~~~~~~~~~~~~~~i~~-~L~~k~~LlVLDdv~~~~---------~l~~l-~~~~~~~~~gsrIIiTT 169 (1170)
+. ......++.+..+.+ .-..++++|++|+++... +...+ .+.+. ...-++|.+|
T Consensus 249 -----------g~-~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaT 314 (821)
T CHL00095 249 -----------GT-KYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGAT 314 (821)
T ss_pred -----------cC-CCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeC
Confidence 00 001112222222222 223578999999985321 12222 22211 1234666666
Q ss_pred CCchhhhh-----hCCCCccEEECCCCChHHHHHHHHH
Q 045458 170 RDKQLLVA-----HEVDEEHILNLDVLNNDEALQLFSM 202 (1170)
Q Consensus 170 R~~~v~~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~ 202 (1170)
........ .-......++++..+.++...++..
T Consensus 315 t~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 315 TLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred CHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 65543111 1112224788999999998888764
No 141
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.75 E-value=0.0005 Score=82.07 Aligned_cols=181 Identities=15% Similarity=0.168 Sum_probs=100.0
Q ss_pred cccchhh--HHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCc--eeEEEecchhhccCCcHHHHHHHH
Q 045458 30 LVGIESR--LEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDG--SSFLADVREKSEKEGSVISLQKQL 105 (1170)
Q Consensus 30 ~vGr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~l~~~l 105 (1170)
.+|...+ .....++.........-+.|+|.+|+|||+||+++++.+..+++. +.++. . ..+..++
T Consensus 125 v~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-~----------~~~~~~~ 193 (450)
T PRK00149 125 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-S----------EKFTNDF 193 (450)
T ss_pred ccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-H----------HHHHHHH
Confidence 4465443 233334433222233568899999999999999999988766532 22333 1 2233333
Q ss_pred HHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH---H-HHHHhhcCcC-CCCCCcEEEEEeCCchh-hh---
Q 045458 106 LSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV---E-QLQSLAGKRD-WFGPGSRILITTRDKQL-LV--- 176 (1170)
Q Consensus 106 l~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~---~-~l~~l~~~~~-~~~~gsrIIiTTR~~~v-~~--- 176 (1170)
...+.. .....+.+.++ +.-+|||||++.. + ..+.+...+. ....|..||+|+....- ..
T Consensus 194 ~~~~~~----------~~~~~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~ 262 (450)
T PRK00149 194 VNALRN----------NTMEEFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLE 262 (450)
T ss_pred HHHHHc----------CcHHHHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHH
Confidence 333321 11233444554 3448899999642 1 1122222111 01235568888865421 11
Q ss_pred -hh--CCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHH
Q 045458 177 -AH--EVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKV 234 (1170)
Q Consensus 177 -~~--~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 234 (1170)
.. .......+++++.+.++..+++...+-... ..-..+....|++.+.|..-.+.-
T Consensus 263 ~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~--~~l~~e~l~~ia~~~~~~~R~l~~ 321 (450)
T PRK00149 263 ERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEG--IDLPDEVLEFIAKNITSNVRELEG 321 (450)
T ss_pred HHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHcCcCCCHHHHHH
Confidence 00 112223799999999999999998875322 223346677788888877655443
No 142
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.72 E-value=0.0012 Score=73.99 Aligned_cols=195 Identities=13% Similarity=0.098 Sum_probs=107.8
Q ss_pred CccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccc---------------cCceeEEEecchhh
Q 045458 28 KELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE---------------FDGSSFLADVREKS 92 (1170)
Q Consensus 28 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~---------------f~~~~~~~~~~~~~ 92 (1170)
++++|-+...+.+.+.+..+ .-.+...++|..|+||+++|..+++.+-.. ++...|+......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~- 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH- 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc-
Confidence 46899999999999998763 224789999999999999999998864221 2222333211000
Q ss_pred ccCCcHHHHHHHHHHHHhhcCC-CccccchhhHHHHHHhh-----CCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcE
Q 045458 93 EKEGSVISLQKQLLSNLLKLGD-ISIWHVEDGINIIGSRL-----RQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSR 164 (1170)
Q Consensus 93 ~~~~~~~~l~~~ll~~l~~~~~-~~~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsr 164 (1170)
....+. ..-.......+. ...-.+++ ++.+.+.+ .+++-++|+|+++.. ....+++..+..-+ .+.
T Consensus 82 -~g~~~~---~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~ 155 (314)
T PRK07399 82 -QGKLIT---ASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGT 155 (314)
T ss_pred -cccccc---hhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCe
Confidence 000000 000000000000 00001111 22333333 245668899999765 33444544433333 455
Q ss_pred EEEEeCCc-hhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHHH
Q 045458 165 ILITTRDK-QLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVLG 236 (1170)
Q Consensus 165 IIiTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~ 236 (1170)
+|++|.+. .+... -......+++.+++.++..+.+...+... . .......++..++|.|.....+.
T Consensus 156 fILi~~~~~~Ll~T-I~SRcq~i~f~~l~~~~~~~~L~~~~~~~--~---~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 156 LILIAPSPESLLPT-IVSRCQIIPFYRLSDEQLEQVLKRLGDEE--I---LNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EEEEECChHhCcHH-HHhhceEEecCCCCHHHHHHHHHHhhccc--c---chhHHHHHHHHcCCCHHHHHHHH
Confidence 66555544 33332 22334589999999999999998765211 1 11113578999999997665443
No 143
>PRK06620 hypothetical protein; Validated
Probab=97.72 E-value=0.00031 Score=74.29 Aligned_cols=135 Identities=16% Similarity=0.086 Sum_probs=76.8
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRL 131 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 131 (1170)
+.+.|||++|+|||+||+++.+.... .++... ... + +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~~------~~~-----~-------------------------~~~ 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKDI------FFN-----E-------------------------EIL 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcchh------hhc-----h-------------------------hHH
Confidence 66899999999999999987765421 222100 000 0 011
Q ss_pred CCCeEEEEEeCCCCHHH--HHHhhcCcCCCCCCcEEEEEeCCchhh---hhh--CCCCccEEECCCCChHHHHHHHHHhh
Q 045458 132 RQKKVLLIIDDVADVEQ--LQSLAGKRDWFGPGSRILITTRDKQLL---VAH--EVDEEHILNLDVLNNDEALQLFSMKA 204 (1170)
Q Consensus 132 ~~k~~LlVLDdv~~~~~--l~~l~~~~~~~~~gsrIIiTTR~~~v~---~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~a 204 (1170)
+ +.-++++||++..++ +-.+..... ..|..||+|++..... ... ......++++++++.++..+++.+.+
T Consensus 84 ~-~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 84 E-KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred h-cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHH
Confidence 1 224788899975433 222211111 3567899999855421 000 01112379999999999888888776
Q ss_pred cCCCCCChhhHHHHHHHHHHhCCCchHH
Q 045458 205 FKTHQPVGEYVELSERVLEYAGGLPLAL 232 (1170)
Q Consensus 205 ~~~~~~~~~~~~~~~~i~~~~~GlPLal 232 (1170)
.... ..-.++...-|++++.|.--.+
T Consensus 161 ~~~~--l~l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 161 SISS--VTISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred HHcC--CCCCHHHHHHHHHHccCCHHHH
Confidence 4221 1223456666777666654443
No 144
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.72 E-value=0.0014 Score=68.83 Aligned_cols=54 Identities=24% Similarity=0.474 Sum_probs=41.1
Q ss_pred CCccCccccchhhHHHHHHH---HcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 24 PETIKELVGIESRLEKIRFL---MGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 24 ~~~~~~~vGr~~~~~~l~~~---L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
+...+.++|.|.+.+.|.+- +..+ ....-|.+||..|.|||++++++.+.+..+
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G-~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQG-LPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcC-CCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 44457899999999888642 2222 234567889999999999999999987665
No 145
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.69 E-value=0.0006 Score=87.03 Aligned_cols=159 Identities=10% Similarity=0.082 Sum_probs=88.2
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhcccc------CceeEEEecchhhccCC
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEF------DGSSFLADVREKSEKEG 96 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~ 96 (1170)
.+...+.+|||+.+++++.+.|.... ..-+.++|.+|+||||+|+.++.++.... ...+|..++........
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~ 250 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAK 250 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccc
Confidence 34455679999999999999887532 34567899999999999999999864321 22333332222110000
Q ss_pred cHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhh--CCCeEEEEEeCCCCHH---------HHHH-hhcCcCCCCCCcE
Q 045458 97 SVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRL--RQKKVLLIIDDVADVE---------QLQS-LAGKRDWFGPGSR 164 (1170)
Q Consensus 97 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L--~~k~~LlVLDdv~~~~---------~l~~-l~~~~~~~~~gsr 164 (1170)
.....++....+.+.+ .+++++|++|+++... +... +.+.+. ...-+
T Consensus 251 -------------------~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~--~g~l~ 309 (857)
T PRK10865 251 -------------------YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELH 309 (857)
T ss_pred -------------------hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh--cCCCe
Confidence 0001111122221211 2478999999986542 1222 223221 12345
Q ss_pred EEEEeCCchhhh----hhC-CCCccEEECCCCChHHHHHHHHHhh
Q 045458 165 ILITTRDKQLLV----AHE-VDEEHILNLDVLNNDEALQLFSMKA 204 (1170)
Q Consensus 165 IIiTTR~~~v~~----~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a 204 (1170)
+|-||....... ... ....+.+.+...+.++..++++...
T Consensus 310 ~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 310 CVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred EEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 666665544211 111 1112257778889999999886543
No 146
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=0.0011 Score=74.90 Aligned_cols=95 Identities=18% Similarity=0.199 Sum_probs=61.7
Q ss_pred CeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCCchhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCC
Q 045458 134 KKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRDKQLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPV 211 (1170)
Q Consensus 134 k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 211 (1170)
.|+ +|+|+++.. +....+...+..-.+++.+|+||.+.......-....+.+.+.+++.+++.+.+.... . .
T Consensus 107 ~kv-~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~-~--- 180 (328)
T PRK05707 107 RKV-VLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-P-E--- 180 (328)
T ss_pred CeE-EEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-c-c---
Confidence 444 467999754 4455555544444567888888877653332223333589999999999999997653 1 1
Q ss_pred hhhHHHHHHHHHHhCCCchHHHHH
Q 045458 212 GEYVELSERVLEYAGGLPLALKVL 235 (1170)
Q Consensus 212 ~~~~~~~~~i~~~~~GlPLal~~l 235 (1170)
...+.+..++..++|.|+....+
T Consensus 181 -~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 -SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -CChHHHHHHHHHcCCCHHHHHHH
Confidence 11234567789999999765444
No 147
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.68 E-value=0.00056 Score=87.78 Aligned_cols=158 Identities=10% Similarity=0.114 Sum_probs=88.9
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhcccc------CceeEEEecchhhccCC
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEF------DGSSFLADVREKSEKEG 96 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~ 96 (1170)
.+...+.+|||+.+++++.+.|.... ...+.++|.+|+|||++|+.++.++...+ ...+|..++....
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~---- 241 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALI---- 241 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHh----
Confidence 34445679999999999999887643 34556899999999999999998875431 2233333221110
Q ss_pred cHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhh-C-CCeEEEEEeCCCCHH----------HHHHhhcCcCCCCCC-c
Q 045458 97 SVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRL-R-QKKVLLIIDDVADVE----------QLQSLAGKRDWFGPG-S 163 (1170)
Q Consensus 97 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L-~-~k~~LlVLDdv~~~~----------~l~~l~~~~~~~~~g-s 163 (1170)
.. . ......+.....+.+.+ + +++.+|++|+++... ..+.+.+.. ..| -
T Consensus 242 ----------a~----~-~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l---~~g~i 303 (852)
T TIGR03346 242 ----------AG----A-KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL---ARGEL 303 (852)
T ss_pred ----------hc----c-hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh---hcCce
Confidence 00 0 00011122222222222 2 468999999986442 122232222 223 3
Q ss_pred EEEEEeCCchhhhhhC-----CCCccEEECCCCChHHHHHHHHHhh
Q 045458 164 RILITTRDKQLLVAHE-----VDEEHILNLDVLNNDEALQLFSMKA 204 (1170)
Q Consensus 164 rIIiTTR~~~v~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 204 (1170)
++|.+|.......... ......+.++..+.++..+++....
T Consensus 304 ~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 304 HCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred EEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 5555555443211000 1122368899999999999887553
No 148
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.67 E-value=0.00078 Score=79.38 Aligned_cols=159 Identities=16% Similarity=0.168 Sum_probs=90.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhccccC-c-eeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHH
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSYEFD-G-SSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIG 128 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~-~-~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~ 128 (1170)
...+.|+|..|+|||+||+++++.+..+.+ . ++++. . ..+..++...+... ....+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-~----------~~~~~~~~~~~~~~----------~~~~~~ 194 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-S----------EKFTNDFVNALRNN----------KMEEFK 194 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-H----------HHHHHHHHHHHHcC----------CHHHHH
Confidence 356889999999999999999998766542 2 23332 1 22333444443211 123344
Q ss_pred HhhCCCeEEEEEeCCCCHH---H-HHHhhcCcCC-CCCCcEEEEEeCCch-hhhhh------CCCCccEEECCCCChHHH
Q 045458 129 SRLRQKKVLLIIDDVADVE---Q-LQSLAGKRDW-FGPGSRILITTRDKQ-LLVAH------EVDEEHILNLDVLNNDEA 196 (1170)
Q Consensus 129 ~~L~~k~~LlVLDdv~~~~---~-l~~l~~~~~~-~~~gsrIIiTTR~~~-v~~~~------~~~~~~~~~l~~L~~~ea 196 (1170)
+.+++ .-+|||||++... . .+.+...+.. ...+..+|+|+.... ..... .......+++++.+.++.
T Consensus 195 ~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r 273 (405)
T TIGR00362 195 EKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETR 273 (405)
T ss_pred HHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHH
Confidence 44443 3378899996431 1 1222221111 124566888876432 11111 011123689999999999
Q ss_pred HHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHH
Q 045458 197 LQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALK 233 (1170)
Q Consensus 197 ~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 233 (1170)
.+++...+-.... .-.++....|++...|..-.+.
T Consensus 274 ~~il~~~~~~~~~--~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 274 LAILQKKAEEEGL--ELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHHHHcCC--CCCHHHHHHHHHhcCCCHHHHH
Confidence 9999988744322 2234667777777777665443
No 149
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.66 E-value=0.00034 Score=70.94 Aligned_cols=52 Identities=23% Similarity=0.378 Sum_probs=42.8
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
.|....+.||-+..++.+.-.... ++.+-+.|.||+|+||||-+..+++.+-
T Consensus 22 rP~~l~dIVGNe~tv~rl~via~~--gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 22 RPSVLQDIVGNEDTVERLSVIAKE--GNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred CchHHHHhhCCHHHHHHHHHHHHc--CCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 355567899999999988776654 5778889999999999999999887653
No 150
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.66 E-value=4.2e-05 Score=82.34 Aligned_cols=93 Identities=14% Similarity=0.083 Sum_probs=57.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhcc-ccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCcc-----ccchhhH
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSY-EFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISI-----WHVEDGI 124 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~-----~~~~~~~ 124 (1170)
...++|.|++|+|||||++.+++.+.. +|+..+|+..+.+. ...+.++++++...+.-...... .......
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er---~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER---PEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC---CccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 367899999999999999999997654 58888888755442 12346777777332221111000 0111222
Q ss_pred HHHHHh-hCCCeEEEEEeCCCCH
Q 045458 125 NIIGSR-LRQKKVLLIIDDVADV 146 (1170)
Q Consensus 125 ~~i~~~-L~~k~~LlVLDdv~~~ 146 (1170)
...+.. -+++++++++|++...
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHHh
Confidence 222222 2479999999999654
No 151
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.65 E-value=0.00048 Score=72.47 Aligned_cols=267 Identities=21% Similarity=0.252 Sum_probs=141.8
Q ss_pred CCCccCccccchhhHHHHHHHHcCC---CCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHH
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTG---SSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVI 99 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 99 (1170)
.|..-++|||-++-.++|.-.+... ....--|.++|++|.||||||.-+++++...+.. . ....-.+.+.
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~----t-sGp~leK~gD-- 93 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKI----T-SGPALEKPGD-- 93 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEe----c-ccccccChhh--
Confidence 3666688999998888886555331 2335678899999999999999999987644221 0 1111112221
Q ss_pred HHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHHH-HHH-hhcCcCCC--------CCCcE-----
Q 045458 100 SLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVEQ-LQS-LAGKRDWF--------GPGSR----- 164 (1170)
Q Consensus 100 ~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~~-l~~-l~~~~~~~--------~~gsr----- 164 (1170)
+..++.. |+..- ++.+|.+..... .++ +-+...+| |+++|
T Consensus 94 --laaiLt~----------------------Le~~D-VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ld 148 (332)
T COG2255 94 --LAAILTN----------------------LEEGD-VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLD 148 (332)
T ss_pred --HHHHHhc----------------------CCcCC-eEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEecc
Confidence 1112222 22222 445677654321 111 11222221 33443
Q ss_pred ------EEEEeCCchhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHHHHh
Q 045458 165 ------ILITTRDKQLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVLGSF 238 (1170)
Q Consensus 165 ------IIiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~ 238 (1170)
|=.|||...+.....-.-..+.+++-.+.+|-.+...+.|..- ..+..++.+.+|+++..|-|--..-+-+.
T Consensus 149 LppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l--~i~i~~~~a~eIA~rSRGTPRIAnRLLrR 226 (332)
T COG2255 149 LPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKIL--GIEIDEEAALEIARRSRGTPRIANRLLRR 226 (332)
T ss_pred CCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHh--CCCCChHHHHHHHHhccCCcHHHHHHHHH
Confidence 4468887654333221122378889999999999998887322 22344567889999999999543333222
Q ss_pred hcCCCHHHHHHHHHH--hhcCCCchHHHHHHhhccCCChhhhhHhhhhcccccc--cCHHHHHHHHhhCCCCccchh-hh
Q 045458 239 LIGRTADLWRSALER--LKRDPSYKIMSILQISFDGLQGSEKKIFLDVACFFKR--WDRDYVAEILEGCGFSPVIGL-EV 313 (1170)
Q Consensus 239 L~~~~~~~w~~~l~~--l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~--~~~~~l~~~~~~~g~~~~~~l-~~ 313 (1170)
.+ ++..+-.. +...........|.+--.+|+...++.+..+.-.+.| .-.+.++..+..+-...+..+ --
T Consensus 227 VR-----Dfa~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPy 301 (332)
T COG2255 227 VR-----DFAQVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPY 301 (332)
T ss_pred HH-----HHHHHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHH
Confidence 21 11111000 0000001233444444557777777777665544322 344555554432211111111 24
Q ss_pred hhcccceeeeCCCce
Q 045458 314 LIERSLLTVDEDNTL 328 (1170)
Q Consensus 314 L~~~sLi~~~~~~~~ 328 (1170)
|+..++|+....+++
T Consensus 302 Liq~gfi~RTpRGR~ 316 (332)
T COG2255 302 LIQQGFIQRTPRGRI 316 (332)
T ss_pred HHHhchhhhCCCcce
Confidence 788888888876664
No 152
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.65 E-value=9.3e-06 Score=95.94 Aligned_cols=167 Identities=23% Similarity=0.269 Sum_probs=96.2
Q ss_pred CceEEEcCCCCCCCCCC-CCCCCceeEEEccCCChHHHhhcCCCCCCCcEEEcCCCCCCCcCCCCCCCCCccEEEeeccC
Q 045458 425 KLRLLDWPGYPLKSLPP-NLQLDKTIEFKMLCSRIEELWKGIKSLNMLKVMKVSYSQSLIKIPDFTGVPNLEKLYLEGCT 503 (1170)
Q Consensus 425 ~Lr~L~l~~~~l~~lp~-~~~l~~L~~L~L~~s~i~~L~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~ 503 (1170)
+|.+|++.++.++.+.. .-.+.+|++|++++|.|.++ .++..+..|+.|++++|. +..++.+..+++|+.+++.+|.
T Consensus 96 ~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~-i~~~~~~~~l~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 96 SLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNL-ISDISGLESLKSLKLLDLSYNR 173 (414)
T ss_pred ceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccCc-chhccCCccchhhhcccCCcch
Confidence 56677777777776666 33677777777777777766 455666667777777766 4556666667777777777654
Q ss_pred Cccccccc-ccCCCCccEEEeeCCCCCCccCccccCCcccEEEecCCCCCCccccccCCCC--CCcEEEecCccCCccCc
Q 045458 504 RLREIHPS-LLLHSKLVILNLTGCTSLATLPGKIFMKSVKKLVLSGCSKLKKFPKIVGNME--CLSKLLLDGTAIGELPL 580 (1170)
Q Consensus 504 ~l~~~~~~-i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~--~L~~L~L~~~~i~~l~~ 580 (1170)
... +... +..+.+|+.+.+.++. +..+...-.+..+..+++..+.....-+ +..+. +|+.+++.++.+...+.
T Consensus 174 i~~-ie~~~~~~~~~l~~l~l~~n~-i~~i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~ 249 (414)
T KOG0531|consen 174 IVD-IENDELSELISLEELDLGGNS-IREIEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSPE 249 (414)
T ss_pred hhh-hhhhhhhhccchHHHhccCCc-hhcccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccccccc
Confidence 322 2221 4556666666666532 2222222223333333444443222111 11112 37777777777777766
Q ss_pred chhcCCCCCEEeccCCC
Q 045458 581 SIELLSKLVSLDLNNCK 597 (1170)
Q Consensus 581 ~i~~l~~L~~L~L~~~~ 597 (1170)
.+..+.++..|++..+.
T Consensus 250 ~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 250 GLENLKNLPVLDLSSNR 266 (414)
T ss_pred cccccccccccchhhcc
Confidence 66667777777776654
No 153
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.65 E-value=0.00061 Score=83.14 Aligned_cols=198 Identities=17% Similarity=0.216 Sum_probs=107.2
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccc--cCc-eeEEE-ecchhhccCCcH
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE--FDG-SSFLA-DVREKSEKEGSV 98 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~--f~~-~~~~~-~~~~~~~~~~~~ 98 (1170)
.|...+++||.+...+.|...+..+ .-.+.+.++|..|+||||+|+.+++.+-.. .+. .|-.. ..++.......
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~- 88 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSV- 88 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCC-
Confidence 3556678999999999999988753 224667899999999999999998865321 000 00000 00000000000
Q ss_pred HHHHHHHHHHHhhcCCCccccchhhHHHHHHhh-----CCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCC
Q 045458 99 ISLQKQLLSNLLKLGDISIWHVEDGINIIGSRL-----RQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRD 171 (1170)
Q Consensus 99 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~ 171 (1170)
++. .+...... ..++ +..+.+.+ ..++-++|+|+++.. ...+.|...+....+.+.+|++|.+
T Consensus 89 -d~~-----eid~~s~~---~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~ 158 (576)
T PRK14965 89 -DVF-----EIDGASNT---GVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTE 158 (576)
T ss_pred -Cee-----eeeccCcc---CHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCC
Confidence 000 00000000 0111 11111111 234457889999754 3455555544444567777766654
Q ss_pred c-hhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCc-hHHHHH
Q 045458 172 K-QLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLP-LALKVL 235 (1170)
Q Consensus 172 ~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~l 235 (1170)
. .+.... ......+++..++.++..+.+...+-.... ....+.+..+++.++|.. .|+..+
T Consensus 159 ~~kl~~tI-~SRc~~~~f~~l~~~~i~~~L~~i~~~egi--~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 159 PHKVPITI-LSRCQRFDFRRIPLQKIVDRLRYIADQEGI--SISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred hhhhhHHH-HHhhhhhhcCCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3 333221 122237899999999998888766533221 123356777888888865 444443
No 154
>CHL00181 cbbX CbbX; Provisional
Probab=97.65 E-value=0.0012 Score=73.17 Aligned_cols=156 Identities=17% Similarity=0.154 Sum_probs=83.5
Q ss_pred ccccchhhHHHHHHHHc------------CCC-CCeEEEEEEeCCCccHHHHHHHHHhhhccc-c-CceeEEEecchhhc
Q 045458 29 ELVGIESRLEKIRFLMG------------TGS-SDVRMIGIWGMGGLGKTTLARVVYDSMSYE-F-DGSSFLADVREKSE 93 (1170)
Q Consensus 29 ~~vGr~~~~~~l~~~L~------------~~~-~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~-f-~~~~~~~~~~~~~~ 93 (1170)
.++|.+...++|.++.. ... .....+.++|.+|+||||+|+.+++..... + ...-|+..-+
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~---- 99 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR---- 99 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----
Confidence 57888777766654421 111 123357899999999999999998864321 1 1111222100
Q ss_pred cCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH-----------HHHHHhhcCcCCCCCC
Q 045458 94 KEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV-----------EQLQSLAGKRDWFGPG 162 (1170)
Q Consensus 94 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~-----------~~l~~l~~~~~~~~~g 162 (1170)
.. +.....+.. .......+.+. ..-+|+||+++.. +..+.+.........+
T Consensus 100 -----~~----l~~~~~g~~------~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~ 161 (287)
T CHL00181 100 -----DD----LVGQYIGHT------APKTKEVLKKA---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDD 161 (287)
T ss_pred -----HH----HHHHHhccc------hHHHHHHHHHc---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCC
Confidence 11 222221100 01111222222 2248899999642 3344554444444455
Q ss_pred cEEEEEeCCchhhhhh------CCCCccEEECCCCChHHHHHHHHHhhcC
Q 045458 163 SRILITTRDKQLLVAH------EVDEEHILNLDVLNNDEALQLFSMKAFK 206 (1170)
Q Consensus 163 srIIiTTR~~~v~~~~------~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 206 (1170)
.+||+++......... ...-...+++++++.+|..+++...+-+
T Consensus 162 ~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 162 LVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred EEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 6777777543322111 0111237999999999999999877643
No 155
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.62 E-value=0.00091 Score=78.73 Aligned_cols=153 Identities=14% Similarity=0.106 Sum_probs=84.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRL 131 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 131 (1170)
.-+.|+|..|+|||+||+++++.+......++++. . ..+..++...+.. ...+.+++.+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-~----------~~f~~~~~~~l~~----------~~~~~f~~~~ 200 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-S----------ELFTEHLVSAIRS----------GEMQRFRQFY 200 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-H----------HHHHHHHHHHHhc----------chHHHHHHHc
Confidence 45789999999999999999998765433344443 1 2233334333321 0123344444
Q ss_pred CCCeEEEEEeCCCCHH----HHHHhhcCcCC-CCCCcEEEEEeCCch-hhh----hh--CCCCccEEECCCCChHHHHHH
Q 045458 132 RQKKVLLIIDDVADVE----QLQSLAGKRDW-FGPGSRILITTRDKQ-LLV----AH--EVDEEHILNLDVLNNDEALQL 199 (1170)
Q Consensus 132 ~~k~~LlVLDdv~~~~----~l~~l~~~~~~-~~~gsrIIiTTR~~~-v~~----~~--~~~~~~~~~l~~L~~~ea~~L 199 (1170)
+. .-+|++||++... ..+.+...+.. ...|..||+||.... ... .. .......+++.+++.++..++
T Consensus 201 ~~-~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~i 279 (445)
T PRK12422 201 RN-VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSF 279 (445)
T ss_pred cc-CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHH
Confidence 43 3478889985431 11222211110 124567888885431 111 11 112224889999999999999
Q ss_pred HHHhhcCCCCCChhhHHHHHHHHHHhCCC
Q 045458 200 FSMKAFKTHQPVGEYVELSERVLEYAGGL 228 (1170)
Q Consensus 200 f~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 228 (1170)
+.+++-... ..-..+...-+++...|.
T Consensus 280 L~~k~~~~~--~~l~~evl~~la~~~~~d 306 (445)
T PRK12422 280 LERKAEALS--IRIEETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHHcC--CCCCHHHHHHHHHhcCCC
Confidence 988774322 112234455555555543
No 156
>CHL00176 ftsH cell division protein; Validated
Probab=97.61 E-value=0.00078 Score=82.43 Aligned_cols=175 Identities=16% Similarity=0.219 Sum_probs=99.6
Q ss_pred ccCccccchhhHHHHHHHHcC---C-------CCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccC
Q 045458 26 TIKELVGIESRLEKIRFLMGT---G-------SSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKE 95 (1170)
Q Consensus 26 ~~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 95 (1170)
..++++|.+...+++.+.+.. . ..-.+-|.++|++|+|||++|++++...... |+. +..
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-----~i~-is~----- 249 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-----FFS-ISG----- 249 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eee-ccH-----
Confidence 346788998888777665421 1 1224568999999999999999998865322 222 100
Q ss_pred CcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH----------------HHHHhhcCcCCC
Q 045458 96 GSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVE----------------QLQSLAGKRDWF 159 (1170)
Q Consensus 96 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~----------------~l~~l~~~~~~~ 159 (1170)
..+.... . . .........+.+.....+.+|+|||++... .+..+....+.+
T Consensus 250 ---s~f~~~~----~-g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~ 316 (638)
T CHL00176 250 ---SEFVEMF----V-G-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGF 316 (638)
T ss_pred ---HHHHHHh----h-h-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccc
Confidence 0110000 0 0 001122233445556788999999996431 133444333222
Q ss_pred --CCCcEEEEEeCCchhhhhhCC---CCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCC
Q 045458 160 --GPGSRILITTRDKQLLVAHEV---DEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGG 227 (1170)
Q Consensus 160 --~~gsrIIiTTR~~~v~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G 227 (1170)
..+..||.||.........-. .-...+.++..+.++..++++.++-..... .......+++.+.|
T Consensus 317 ~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~---~d~~l~~lA~~t~G 386 (638)
T CHL00176 317 KGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS---PDVSLELIARRTPG 386 (638)
T ss_pred cCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc---hhHHHHHHHhcCCC
Confidence 245667777766543332111 112378999999999999999887432211 12234567777777
No 157
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.59 E-value=1.2e-06 Score=101.45 Aligned_cols=175 Identities=22% Similarity=0.247 Sum_probs=104.4
Q ss_pred hhccCCCccEEeecCcccC--CchhcccCCceEEEcCCCC----------CCCCCCCCCCCceeEEEccCCChHHHhhcC
Q 045458 398 AFSKMTNLRLLGICNLKLP--EGLECLSNKLRLLDWPGYP----------LKSLPPNLQLDKTIEFKMLCSRIEELWKGI 465 (1170)
Q Consensus 398 ~f~~~~~Lr~L~l~~~~l~--~~~~~l~~~Lr~L~l~~~~----------l~~lp~~~~l~~L~~L~L~~s~i~~L~~~l 465 (1170)
.+-.+..||+|.+.++.+. .++..+...|+.|-+++.- ...+.+.+....|...+.++|.+..+-.++
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SL 183 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESL 183 (1096)
T ss_pred eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHH
Confidence 3446778899998887764 3555555556666555421 223444445666777777777777777777
Q ss_pred CCCCCCcEEEcCCCCCCCcCCCCCCCCCccEEEeeccCCcccccccccCCCCccEEEeeCCCCCCccCccccCCcccEEE
Q 045458 466 KSLNMLKVMKVSYSQSLIKIPDFTGVPNLEKLYLEGCTRLREIHPSLLLHSKLVILNLTGCTSLATLPGKIFMKSVKKLV 545 (1170)
Q Consensus 466 ~~l~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ 545 (1170)
.-++.|+.|+|++|+ ......+..+++|++|||+.| .+..+|.--..-.+|+.|++++ +.++.+...-.+++|+.|+
T Consensus 184 qll~ale~LnLshNk-~~~v~~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~lrn-N~l~tL~gie~LksL~~LD 260 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNK-FTKVDNLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNLRN-NALTTLRGIENLKSLYGLD 260 (1096)
T ss_pred HHHHHhhhhccchhh-hhhhHHHHhcccccccccccc-hhccccccchhhhhheeeeecc-cHHHhhhhHHhhhhhhccc
Confidence 777777777777776 334446677777777777775 3444432211122377777776 4455555544466777777
Q ss_pred ecCCCCCCc-cccccCCCCCCcEEEecCccC
Q 045458 546 LSGCSKLKK-FPKIVGNMECLSKLLLDGTAI 575 (1170)
Q Consensus 546 L~~~~~~~~-l~~~l~~l~~L~~L~L~~~~i 575 (1170)
++.|-.... --..++.+..|+.|+|.||.+
T Consensus 261 lsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 766543321 112234445566666666655
No 158
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.55 E-value=0.00057 Score=66.51 Aligned_cols=23 Identities=43% Similarity=0.541 Sum_probs=21.2
Q ss_pred EEEEeCCCccHHHHHHHHHhhhc
Q 045458 54 IGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 54 i~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
|.|+|++|+||||+|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999875
No 159
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.54 E-value=0.00095 Score=80.66 Aligned_cols=173 Identities=17% Similarity=0.245 Sum_probs=95.1
Q ss_pred cCccccchhhHHHHHHHHc---C-------CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCC
Q 045458 27 IKELVGIESRLEKIRFLMG---T-------GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEG 96 (1170)
Q Consensus 27 ~~~~vGr~~~~~~l~~~L~---~-------~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 96 (1170)
.++++|.+...+++.+++. . +....+-+.++|++|+|||++|++++...... |+. +..
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~-----~~~-i~~------ 121 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP-----FFS-ISG------ 121 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC-----eee-ccH------
Confidence 3568899887777765443 1 11224568899999999999999998865322 221 100
Q ss_pred cHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH----------------HHHHhhcCcCCC-
Q 045458 97 SVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVE----------------QLQSLAGKRDWF- 159 (1170)
Q Consensus 97 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~----------------~l~~l~~~~~~~- 159 (1170)
..+.. ..... ........+.......+.+|+||+++... .+..+....+.+
T Consensus 122 --~~~~~----~~~g~------~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~ 189 (495)
T TIGR01241 122 --SDFVE----MFVGV------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG 189 (495)
T ss_pred --HHHHH----HHhcc------cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcccc
Confidence 01111 00000 01112233334445677899999996531 122333222222
Q ss_pred -CCCcEEEEEeCCchhhhhh-----CCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCC
Q 045458 160 -GPGSRILITTRDKQLLVAH-----EVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGL 228 (1170)
Q Consensus 160 -~~gsrIIiTTR~~~v~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 228 (1170)
..+..||.||......... ..+ ..++++..+.++..++|..++-...... ......+++.+.|.
T Consensus 190 ~~~~v~vI~aTn~~~~ld~al~r~gRfd--~~i~i~~Pd~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G~ 259 (495)
T TIGR01241 190 TNTGVIVIAATNRPDVLDPALLRPGRFD--RQVVVDLPDIKGREEILKVHAKNKKLAP---DVDLKAVARRTPGF 259 (495)
T ss_pred CCCCeEEEEecCChhhcCHHHhcCCcce--EEEEcCCCCHHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCCC
Confidence 2345566667554322211 223 3799999999999999988764322211 11234677777774
No 160
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.53 E-value=0.0024 Score=76.54 Aligned_cols=155 Identities=14% Similarity=0.177 Sum_probs=87.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccccC-c-eeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHH
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYEFD-G-SSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGS 129 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~f~-~-~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~ 129 (1170)
..+.|||..|.|||.|++++++.+...+. . +.|+. . ..+..++...+.. ...+.+++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-a----------eef~~el~~al~~----------~~~~~f~~ 373 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-S----------EEFTNEFINSIRD----------GKGDSFRR 373 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-H----------HHHHHHHHHHHHh----------ccHHHHHH
Confidence 34899999999999999999998765432 2 23433 1 3333344433321 11233445
Q ss_pred hhCCCeEEEEEeCCCCH---HHH-HHhhcCcC-CCCCCcEEEEEeCCch-----hhhhh--CCCCccEEECCCCChHHHH
Q 045458 130 RLRQKKVLLIIDDVADV---EQL-QSLAGKRD-WFGPGSRILITTRDKQ-----LLVAH--EVDEEHILNLDVLNNDEAL 197 (1170)
Q Consensus 130 ~L~~k~~LlVLDdv~~~---~~l-~~l~~~~~-~~~~gsrIIiTTR~~~-----v~~~~--~~~~~~~~~l~~L~~~ea~ 197 (1170)
++++- =+|||||++.. +.+ +.+...+. ....|..|||||+... +.... ......++++...+.+...
T Consensus 374 ~y~~~-DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~ 452 (617)
T PRK14086 374 RYREM-DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRI 452 (617)
T ss_pred HhhcC-CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHH
Confidence 55443 47888999543 222 12221111 1134667888887642 11100 1122238999999999999
Q ss_pred HHHHHhhcCCCCCChhhHHHHHHHHHHhCCCch
Q 045458 198 QLFSMKAFKTHQPVGEYVELSERVLEYAGGLPL 230 (1170)
Q Consensus 198 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 230 (1170)
+++..++-...- ....+++.-|++++.+..-
T Consensus 453 aIL~kka~~r~l--~l~~eVi~yLa~r~~rnvR 483 (617)
T PRK14086 453 AILRKKAVQEQL--NAPPEVLEFIASRISRNIR 483 (617)
T ss_pred HHHHHHHHhcCC--CCCHHHHHHHHHhccCCHH
Confidence 999988744322 2234556666666555433
No 161
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.52 E-value=0.0018 Score=76.66 Aligned_cols=175 Identities=17% Similarity=0.146 Sum_probs=92.4
Q ss_pred cCccccchhhHHHHHHHHc---C-----CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhc-cCCc
Q 045458 27 IKELVGIESRLEKIRFLMG---T-----GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSE-KEGS 97 (1170)
Q Consensus 27 ~~~~vGr~~~~~~l~~~L~---~-----~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~ 97 (1170)
.+++.|.+...+.+.+... . +-...+-|.++|++|.|||.+|++++..+...| +..+...... ..+.
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~l~~~~vGe 302 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGKLFGGIVGE 302 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHHhcccccCh
Confidence 3568888877666654321 1 113356789999999999999999998764332 2111111100 0010
Q ss_pred HHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH--------------HHHHhhcCcCCCCCCc
Q 045458 98 VISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVE--------------QLQSLAGKRDWFGPGS 163 (1170)
Q Consensus 98 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~--------------~l~~l~~~~~~~~~gs 163 (1170)
-.. ...+.++..-...+.+|++|++|..- .+..+.........+.
T Consensus 303 se~---------------------~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V 361 (489)
T CHL00195 303 SES---------------------RMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPV 361 (489)
T ss_pred HHH---------------------HHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCce
Confidence 011 11111222223578999999997431 0111221111123344
Q ss_pred EEEEEeCCchhhhh-----hCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCc
Q 045458 164 RILITTRDKQLLVA-----HEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLP 229 (1170)
Q Consensus 164 rIIiTTR~~~v~~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 229 (1170)
-||.||........ ...+. .+.++.-+.++..++|..+..+..... ........+++.+.|.-
T Consensus 362 ~vIaTTN~~~~Ld~allR~GRFD~--~i~v~lP~~~eR~~Il~~~l~~~~~~~-~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 362 FVVATANNIDLLPLEILRKGRFDE--IFFLDLPSLEEREKIFKIHLQKFRPKS-WKKYDIKKLSKLSNKFS 429 (489)
T ss_pred EEEEecCChhhCCHHHhCCCcCCe--EEEeCCcCHHHHHHHHHHHHhhcCCCc-ccccCHHHHHhhcCCCC
Confidence 56667765542221 12333 788999999999999998874422110 00112345556665543
No 162
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.51 E-value=9.2e-05 Score=61.08 Aligned_cols=57 Identities=32% Similarity=0.457 Sum_probs=30.0
Q ss_pred ccCeEeccCcCCCccCc-cccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCc
Q 045458 635 DLSELFLDGTSITEVPS-SIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGC 691 (1170)
Q Consensus 635 ~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c 691 (1170)
+|+.|++++|.+..+|. .+..+++|+.|++++|.....-+..|..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 45555555555555553 3455555555555555443333344555555555555554
No 163
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.51 E-value=8.3e-05 Score=83.23 Aligned_cols=94 Identities=15% Similarity=0.083 Sum_probs=59.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhcc-ccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCcc-----ccchhhH
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSY-EFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISI-----WHVEDGI 124 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~-----~~~~~~~ 124 (1170)
-+.++|+|++|+||||||+++|+.+.. +|+..+|+..+.+.. ..+.++++++...+........ .......
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~---~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~i 245 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERP---EEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVI 245 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCch---hHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHH
Confidence 366789999999999999999998755 689999998766532 2236677777543221110000 0011112
Q ss_pred HHHHHh-hCCCeEEEEEeCCCCHH
Q 045458 125 NIIGSR-LRQKKVLLIIDDVADVE 147 (1170)
Q Consensus 125 ~~i~~~-L~~k~~LlVLDdv~~~~ 147 (1170)
+..+.. -.+++++|++|++....
T Consensus 246 e~Ae~~~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 246 EKAKRLVEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHHHHHHHcCCCEEEEEEChHHHH
Confidence 222222 25799999999996543
No 164
>PRK08116 hypothetical protein; Validated
Probab=97.50 E-value=0.00053 Score=75.24 Aligned_cols=102 Identities=23% Similarity=0.241 Sum_probs=57.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRL 131 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 131 (1170)
..+.|+|.+|+|||+||.++++.+..+.-.++|+. + ..+...+....... .......+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-~----------~~ll~~i~~~~~~~-------~~~~~~~~~~~l 176 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-F----------PQLLNRIKSTYKSS-------GKEDENEIIRSL 176 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-H----------HHHHHHHHHHHhcc-------ccccHHHHHHHh
Confidence 45889999999999999999998766533344443 1 23333333332210 111222344555
Q ss_pred CCCeEEEEEeCCC--CHHHH--HHhhcCcC-CCCCCcEEEEEeCCc
Q 045458 132 RQKKVLLIIDDVA--DVEQL--QSLAGKRD-WFGPGSRILITTRDK 172 (1170)
Q Consensus 132 ~~k~~LlVLDdv~--~~~~l--~~l~~~~~-~~~~gsrIIiTTR~~ 172 (1170)
.+-. ||||||+. ...+| +.+...+. ....+..+||||...
T Consensus 177 ~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 177 VNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred cCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 5444 89999993 22222 22222111 123566799998754
No 165
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0014 Score=71.34 Aligned_cols=170 Identities=15% Similarity=0.317 Sum_probs=102.2
Q ss_pred CccccchhhHHHHHHHHcCC-----------CCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCC
Q 045458 28 KELVGIESRLEKIRFLMGTG-----------SSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEG 96 (1170)
Q Consensus 28 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 96 (1170)
...=|-+..+++|.+.+... =..++=|.+||++|.|||-||++|+++.... |+..+.
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-----FIrvvg------- 218 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-----FIRVVG------- 218 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-----EEEecc-------
Confidence 55678899999998876432 1345678899999999999999999976543 443221
Q ss_pred cHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhh----CCCeEEEEEeCCCCHH--------------H--HHHhhcCc
Q 045458 97 SVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRL----RQKKVLLIIDDVADVE--------------Q--LQSLAGKR 156 (1170)
Q Consensus 97 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L----~~k~~LlVLDdv~~~~--------------~--l~~l~~~~ 156 (1170)
.. +.+... .++...+++.+ .+.+..|.+|.+|... | +-+|+..+
T Consensus 219 --SE----lVqKYi----------GEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~ql 282 (406)
T COG1222 219 --SE----LVQKYI----------GEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQL 282 (406)
T ss_pred --HH----HHHHHh----------ccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhc
Confidence 11 111111 12233333332 2578899999885431 1 33344444
Q ss_pred CCCC--CCcEEEEEeCCchhhhhhCC---CCccEEECCCCChHHHHHHHHHhhcCCCCCC-hhhHHHHHHHHHHhCCCc
Q 045458 157 DWFG--PGSRILITTRDKQLLVAHEV---DEEHILNLDVLNNDEALQLFSMKAFKTHQPV-GEYVELSERVLEYAGGLP 229 (1170)
Q Consensus 157 ~~~~--~gsrIIiTTR~~~v~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~GlP 229 (1170)
+-|. ...+||.+|....++...-. .-++.++++.-+.+.-.+.|.-|+-+-.... -++ +.+++.+.|.-
T Consensus 283 DGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~s 357 (406)
T COG1222 283 DGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFS 357 (406)
T ss_pred cCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCc
Confidence 4443 45689998876665443321 1123899998888888889988874433222 233 34555555553
No 166
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.43 E-value=0.0042 Score=69.44 Aligned_cols=96 Identities=16% Similarity=0.132 Sum_probs=62.2
Q ss_pred CCeEEEEEeCCCCHH--HHHHhhcCcCCCCCCcEEEEEeCCchhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCC
Q 045458 133 QKKVLLIIDDVADVE--QLQSLAGKRDWFGPGSRILITTRDKQLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQP 210 (1170)
Q Consensus 133 ~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 210 (1170)
+++-++|+|+++... .-.+++..+..-.+++.+|++|....-....-......+.+..++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----V- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----C-
Confidence 355688999998653 344454444434578888888876543222222333479999999999999987531 1
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHHHH
Q 045458 211 VGEYVELSERVLEYAGGLPLALKVLG 236 (1170)
Q Consensus 211 ~~~~~~~~~~i~~~~~GlPLal~~l~ 236 (1170)
....+..++..++|.|+....+.
T Consensus 187 ---~~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 ---SERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred ---ChHHHHHHHHHcCCCHHHHHHHh
Confidence 12336678999999998765443
No 167
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.42 E-value=1.5e-06 Score=100.64 Aligned_cols=101 Identities=25% Similarity=0.236 Sum_probs=54.7
Q ss_pred ccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccC
Q 045458 635 DLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISG 714 (1170)
Q Consensus 635 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~ 714 (1170)
.|...+.+.|.+..+..++.-++.|+.|+|++|+..+.- .+..+++|++|+|+.|. +..+|..-..-..|..|.+++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccch-hccccccchhhhhheeeeecc
Confidence 355556666666666677777777777777776644332 34455666666666553 222222111112356666666
Q ss_pred ccCCCCCccccCCCCCcEEEecCCC
Q 045458 715 TAIRQPPSGIFHMKNLKALYFRGCK 739 (1170)
Q Consensus 715 ~~i~~lp~~l~~l~~L~~L~L~~c~ 739 (1170)
|.++.+ .++.++.+|+.|++++|-
T Consensus 242 N~l~tL-~gie~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 242 NALTTL-RGIENLKSLYGLDLSYNL 265 (1096)
T ss_pred cHHHhh-hhHHhhhhhhccchhHhh
Confidence 655544 344555555555555543
No 168
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.39 E-value=0.0074 Score=63.16 Aligned_cols=199 Identities=18% Similarity=0.180 Sum_probs=107.7
Q ss_pred ccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHH
Q 045458 29 ELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSN 108 (1170)
Q Consensus 29 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 108 (1170)
.+.+...+-+.+..+-..-+.+.+++.++|.-|.|||.+++++....-+.=-..+.+. ...-....+...+..+
T Consensus 29 ~~~~~a~h~e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~------~~~~s~~~~~~ai~~~ 102 (269)
T COG3267 29 LDYWAADHNEALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID------KPTLSDATLLEAIVAD 102 (269)
T ss_pred hhhhhhhhhHHHHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec------CcchhHHHHHHHHHHH
Confidence 3444444444333322222234579999999999999999966554332211111221 1111124455555555
Q ss_pred HhhcCCCccccchhhHHHHHHhh-----CCCe-EEEEEeCCCCH--HHHHHhhc---CcCCCCCCcEEEEEeCCchh---
Q 045458 109 LLKLGDISIWHVEDGINIIGSRL-----RQKK-VLLIIDDVADV--EQLQSLAG---KRDWFGPGSRILITTRDKQL--- 174 (1170)
Q Consensus 109 l~~~~~~~~~~~~~~~~~i~~~L-----~~k~-~LlVLDdv~~~--~~l~~l~~---~~~~~~~gsrIIiTTR~~~v--- 174 (1170)
+.. ...+........+.+.| ++++ +.+++||..+. ..++.+.- .-..+...-+|+..-..+-.
T Consensus 103 l~~---~p~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~l 179 (269)
T COG3267 103 LES---QPKVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRL 179 (269)
T ss_pred hcc---CccchhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhh
Confidence 543 22233333333333333 3566 99999998543 34444432 11112222334444332211
Q ss_pred ----hhhhCCCCccE-EECCCCChHHHHHHHHHhhcCCCCCChhhH-HHHHHHHHHhCCCchHHHHHHH
Q 045458 175 ----LVAHEVDEEHI-LNLDVLNNDEALQLFSMKAFKTHQPVGEYV-ELSERVLEYAGGLPLALKVLGS 237 (1170)
Q Consensus 175 ----~~~~~~~~~~~-~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~-~~~~~i~~~~~GlPLal~~l~~ 237 (1170)
..... ....+ |++.+++.++...++.++..+...+.+-+. +....|.....|.|.++..++.
T Consensus 180 r~~~l~e~~-~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 180 RLPVLRELE-QRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred chHHHHhhh-heEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 11111 11124 999999999999999988765544444333 4567788899999999988764
No 169
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.38 E-value=0.0036 Score=71.15 Aligned_cols=163 Identities=13% Similarity=0.075 Sum_probs=87.0
Q ss_pred Ccccc-chhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccc--cCceeEEEecchhhccCCcHHHHHHH
Q 045458 28 KELVG-IESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE--FDGSSFLADVREKSEKEGSVISLQKQ 104 (1170)
Q Consensus 28 ~~~vG-r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (1170)
..++| -+..++.|...+..+ .-.+...++|+.|+||||+|+.+++.+-.. ..... .+. -..-..
T Consensus 5 ~~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~-----------cg~-C~~c~~ 71 (329)
T PRK08058 5 EQLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEP-----------CGT-CTNCKR 71 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCC-----------CCc-CHHHHH
Confidence 34667 566677888887653 235677999999999999999998864221 00000 000 000000
Q ss_pred HHHHHhh-----cCCCccccchhhHHHHHHh----hCCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCCch
Q 045458 105 LLSNLLK-----LGDISIWHVEDGINIIGSR----LRQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRDKQ 173 (1170)
Q Consensus 105 ll~~l~~-----~~~~~~~~~~~~~~~i~~~----L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~ 173 (1170)
+...-.. ..+......++..+.+... ..+++=++|+|+++.. +..+.+...+..-.+++.+|++|.+..
T Consensus 72 ~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~ 151 (329)
T PRK08058 72 IDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKH 151 (329)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChH
Confidence 0000000 0000000111111111111 2234457889998754 335556555554467888888887654
Q ss_pred hhhhhCCCCccEEECCCCChHHHHHHHHHh
Q 045458 174 LLVAHEVDEEHILNLDVLNNDEALQLFSMK 203 (1170)
Q Consensus 174 v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 203 (1170)
-....-......+++.+++.++..+.+...
T Consensus 152 ~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 152 QILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred hCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 222212233358999999999998888653
No 170
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.37 E-value=0.00022 Score=80.49 Aligned_cols=93 Identities=14% Similarity=0.090 Sum_probs=59.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhccc-cCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCcccc-----chhhH
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSYE-FDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWH-----VEDGI 124 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~-----~~~~~ 124 (1170)
-..++|+|++|.|||||++.+++.+... |+..+|+..+.+. ...+.+++++++..+....-..... .+...
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER---~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDER---PEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCC---CccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 3678999999999999999999987666 8888888865442 2234777777754432111111000 01111
Q ss_pred HHHHHh-hCCCeEEEEEeCCCCH
Q 045458 125 NIIGSR-LRQKKVLLIIDDVADV 146 (1170)
Q Consensus 125 ~~i~~~-L~~k~~LlVLDdv~~~ 146 (1170)
+..+.. -++++++|++|++...
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhHH
Confidence 222222 2579999999999654
No 171
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.36 E-value=0.00015 Score=54.84 Aligned_cols=39 Identities=38% Similarity=0.578 Sum_probs=22.4
Q ss_pred CCCEEECcCCCCcccchhhhcCCCCCEeeccCccCCCcCC
Q 045458 801 SLKVLCLSNNSFVSLPASISRLSKLECLNLNGCKKLQSLP 840 (1170)
Q Consensus 801 sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 840 (1170)
+|++|++++|+++.+|..+.+|++|+.|++++|+ +++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 5666666666666666556666666666666653 44443
No 172
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=3.6e-05 Score=80.64 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=28.1
Q ss_pred CCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCc
Q 045458 773 GLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFV 813 (1170)
Q Consensus 773 ~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~ 813 (1170)
.+|++..|+|+.+++....-.+.+..+++|..|.++++.+.
T Consensus 222 ~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 222 PFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred CCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 44556677777777754444556777888888888887655
No 173
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.36 E-value=0.0004 Score=86.51 Aligned_cols=154 Identities=16% Similarity=0.188 Sum_probs=85.2
Q ss_pred CccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccc-----c-CceeEEEecchhhccCCcHHHH
Q 045458 28 KELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE-----F-DGSSFLADVREKSEKEGSVISL 101 (1170)
Q Consensus 28 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~-----f-~~~~~~~~~~~~~~~~~~~~~l 101 (1170)
+.++||+.+++++.+.|..... .-+.++|.+|+|||++|+.++.++... + +..+|..+.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~--~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~------------- 250 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRK--NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI------------- 250 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCC--CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH-------------
Confidence 4699999999999998876322 345689999999999999999875332 1 122221111
Q ss_pred HHHHHHHHhhcCCCccccchhhHHHHHHhh-CCCeEEEEEeCCCCH----------HHHHH-hhcCcCCCCCCcEEEEEe
Q 045458 102 QKQLLSNLLKLGDISIWHVEDGINIIGSRL-RQKKVLLIIDDVADV----------EQLQS-LAGKRDWFGPGSRILITT 169 (1170)
Q Consensus 102 ~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L-~~k~~LlVLDdv~~~----------~~l~~-l~~~~~~~~~gsrIIiTT 169 (1170)
..++. . .....+.+.....+.+.+ +.++.+|++|+++.. .+... +.+.+. ...-++|-+|
T Consensus 251 -~~lla----G-~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgAT 322 (758)
T PRK11034 251 -GSLLA----G-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGST 322 (758)
T ss_pred -HHHhc----c-cchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecC
Confidence 01110 0 000112222222232223 346789999999643 12221 222221 1234555555
Q ss_pred CCchhhhhhC-----CCCccEEECCCCChHHHHHHHHHhh
Q 045458 170 RDKQLLVAHE-----VDEEHILNLDVLNNDEALQLFSMKA 204 (1170)
Q Consensus 170 R~~~v~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 204 (1170)
.......... ......++++..+.+++.+++....
T Consensus 323 t~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred ChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 5433211101 1122479999999999999998543
No 174
>PRK12377 putative replication protein; Provisional
Probab=97.34 E-value=0.0022 Score=69.11 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=28.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
...+.|+|.+|+|||+||.++++.+..+.-.+.|+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 357899999999999999999998776544455554
No 175
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.30 E-value=0.0038 Score=79.27 Aligned_cols=173 Identities=17% Similarity=0.241 Sum_probs=94.7
Q ss_pred CccccchhhHHHHHHHHcC-----------CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCC
Q 045458 28 KELVGIESRLEKIRFLMGT-----------GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEG 96 (1170)
Q Consensus 28 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 96 (1170)
.++.|.+...++|.+.+.. +-...+-|.++|++|+|||++|+++++.....| +. +..
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f-----i~-v~~------ 520 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF-----IA-VRG------ 520 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE-----EE-Eeh------
Confidence 4578888888877776532 112345688999999999999999998765332 21 110
Q ss_pred cHHHHHHHHHHHHhhcCCCccccchhh-HHHHHHhhCCCeEEEEEeCCCCHH--------------HHHHhhcCcCCC--
Q 045458 97 SVISLQKQLLSNLLKLGDISIWHVEDG-INIIGSRLRQKKVLLIIDDVADVE--------------QLQSLAGKRDWF-- 159 (1170)
Q Consensus 97 ~~~~l~~~ll~~l~~~~~~~~~~~~~~-~~~i~~~L~~k~~LlVLDdv~~~~--------------~l~~l~~~~~~~-- 159 (1170)
.. ++.... ...+.. ...+...-+..+.+|++|+++... ....+....+..
T Consensus 521 --~~----l~~~~v-------Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~ 587 (733)
T TIGR01243 521 --PE----ILSKWV-------GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQE 587 (733)
T ss_pred --HH----Hhhccc-------CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccC
Confidence 00 111100 001111 122222334567899999986431 123333333211
Q ss_pred CCCcEEEEEeCCchhhhhhCC---CCccEEECCCCChHHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHHhCCCc
Q 045458 160 GPGSRILITTRDKQLLVAHEV---DEEHILNLDVLNNDEALQLFSMKAFKTHQP-VGEYVELSERVLEYAGGLP 229 (1170)
Q Consensus 160 ~~gsrIIiTTR~~~v~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~GlP 229 (1170)
..+..||.||........... .-...+.++..+.++..++|..+.-+.... ..+ ...+++.+.|.-
T Consensus 588 ~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 588 LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 234566777766544332221 112388999999999999998665322211 112 344566666643
No 176
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.28 E-value=0.0015 Score=79.39 Aligned_cols=54 Identities=24% Similarity=0.397 Sum_probs=44.4
Q ss_pred CCCccCccccchhhHHHHHHHHcCCC---CCeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGS---SDVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~---~~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
.|...++++|-+..++++..++.... ...++++|+|++|+||||+++.++..+.
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45666789999999999999987532 3346899999999999999999997653
No 177
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.26 E-value=0.0034 Score=79.70 Aligned_cols=177 Identities=20% Similarity=0.216 Sum_probs=93.8
Q ss_pred cCccccchhhHHHHHHHHcC-----------CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhcc-
Q 045458 27 IKELVGIESRLEKIRFLMGT-----------GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEK- 94 (1170)
Q Consensus 27 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~- 94 (1170)
.+++.|++..++++.+++.. +-...+-|.++|++|+|||+||+++++.....| +.+. ..+....
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~-~~~i~~~~ 252 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GPEIMSKY 252 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cHHHhccc
Confidence 35688999999998877632 112346788999999999999999998764332 1121 1111100
Q ss_pred CCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH-------------HHHHhhcCcCCC-C
Q 045458 95 EGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVE-------------QLQSLAGKRDWF-G 160 (1170)
Q Consensus 95 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~-------------~l~~l~~~~~~~-~ 160 (1170)
.+. ........+.......+.+|+||+++... ....+....... .
T Consensus 253 ~g~---------------------~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~ 311 (733)
T TIGR01243 253 YGE---------------------SEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKG 311 (733)
T ss_pred ccH---------------------HHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhcccc
Confidence 000 01111222333334567899999985421 122232222211 2
Q ss_pred CCcEEEE-EeCCchhh-hhhCC--CCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchH
Q 045458 161 PGSRILI-TTRDKQLL-VAHEV--DEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLA 231 (1170)
Q Consensus 161 ~gsrIIi-TTR~~~v~-~~~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 231 (1170)
.+..++| ||....-. ..... .-...+.++..+.++..+++..+.-...... ......+++.+.|.--|
T Consensus 312 ~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~---d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 312 RGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE---DVDLDKLAEVTHGFVGA 383 (733)
T ss_pred CCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc---ccCHHHHHHhCCCCCHH
Confidence 3334444 55443211 11110 1123688888899999888886542211111 11245677777776533
No 178
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.26 E-value=0.0066 Score=68.02 Aligned_cols=179 Identities=12% Similarity=0.058 Sum_probs=95.4
Q ss_pred hHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCc---eeEE-Eecchh-hccCCcHHHHHHHHHHHHh
Q 045458 36 RLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDG---SSFL-ADVREK-SEKEGSVISLQKQLLSNLL 110 (1170)
Q Consensus 36 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~---~~~~-~~~~~~-~~~~~~~~~l~~~ll~~l~ 110 (1170)
..+.|.+.+..+ .-.....++|+.|+||+++|+.++..+--+-+. .|=. ...+.. ...+..+..+ .
T Consensus 10 ~~~~l~~~~~~~-rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~ 80 (325)
T PRK06871 10 TYQQITQAFQQG-LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL--------E 80 (325)
T ss_pred HHHHHHHHHHcC-CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE--------c
Confidence 445666666643 224678899999999999999999864221100 0000 000000 0000000000 0
Q ss_pred hcCCCccccchhhHHHHHHhh-----CCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCCchhhhhhCCCCc
Q 045458 111 KLGDISIWHVEDGINIIGSRL-----RQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRDKQLLVAHEVDEE 183 (1170)
Q Consensus 111 ~~~~~~~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~ 183 (1170)
..+...-.+++.. .+.+.+ .+++=++|+|+++.. ....+++..+..-.+++.+|++|....-....-....
T Consensus 81 -p~~~~~I~id~iR-~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC 158 (325)
T PRK06871 81 -PIDNKDIGVDQVR-EINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRC 158 (325)
T ss_pred -cccCCCCCHHHHH-HHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhc
Confidence 0000000111111 122222 245557889999865 3455555555444677888888876542222222233
Q ss_pred cEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHH
Q 045458 184 HILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLAL 232 (1170)
Q Consensus 184 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 232 (1170)
+.+.+.+++.+++.+.+...+. . + ...+...++.++|.|+..
T Consensus 159 ~~~~~~~~~~~~~~~~L~~~~~--~---~--~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 159 QTWLIHPPEEQQALDWLQAQSS--A---E--ISEILTALRINYGRPLLA 200 (325)
T ss_pred eEEeCCCCCHHHHHHHHHHHhc--c---C--hHHHHHHHHHcCCCHHHH
Confidence 4899999999999999986641 1 1 123566788999999643
No 179
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.25 E-value=0.088 Score=60.01 Aligned_cols=104 Identities=13% Similarity=0.076 Sum_probs=68.7
Q ss_pred CeEEEEEeCCCCH-----------HHHHHhhcCcCCCCCCcEEEEEeCCchhhh----hhCCCCccEEECCCCChHHHHH
Q 045458 134 KKVLLIIDDVADV-----------EQLQSLAGKRDWFGPGSRILITTRDKQLLV----AHEVDEEHILNLDVLNNDEALQ 198 (1170)
Q Consensus 134 k~~LlVLDdv~~~-----------~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~----~~~~~~~~~~~l~~L~~~ea~~ 198 (1170)
++-+||+|++... .+|.+.+.. .+-.+||.+|-+..... +..-.....+.+...+++-|.+
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~ 223 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQ 223 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHH
Confidence 3679999998332 235444332 35568999998765433 3322333588999999999999
Q ss_pred HHHHhhcCCCCC-------------C-----hhhHHHHHHHHHHhCCCchHHHHHHHhhcC
Q 045458 199 LFSMKAFKTHQP-------------V-----GEYVELSERVLEYAGGLPLALKVLGSFLIG 241 (1170)
Q Consensus 199 Lf~~~a~~~~~~-------------~-----~~~~~~~~~i~~~~~GlPLal~~l~~~L~~ 241 (1170)
+...+.-..... . ..........++.+||--.=|..+++.++.
T Consensus 224 yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 224 YVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred HHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 999887433110 0 123344567788888888888888888864
No 180
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.23 E-value=0.0033 Score=73.17 Aligned_cols=150 Identities=23% Similarity=0.234 Sum_probs=89.3
Q ss_pred EEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhC
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLR 132 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~ 132 (1170)
++.|.|+-++||||+++.+....... .+++......... ..+ .+..... .+.-.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~----~~l-~d~~~~~------------------~~~~~ 92 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDR----IEL-LDLLRAY------------------IELKE 92 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcch----hhH-HHHHHHH------------------HHhhc
Confidence 99999999999999997777665544 4444421111111 000 1111111 11111
Q ss_pred CCeEEEEEeCCCCHHHHHHhhcCcCCCCCCcEEEEEeCCchhhhhhC----CCCccEEECCCCChHHHHHHHHHhhcCCC
Q 045458 133 QKKVLLIIDDVADVEQLQSLAGKRDWFGPGSRILITTRDKQLLVAHE----VDEEHILNLDVLNNDEALQLFSMKAFKTH 208 (1170)
Q Consensus 133 ~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 208 (1170)
.++..++||.|.....|+.....+...++. +|+||+-......... ......+++.+|+-.|-..+-...+
T Consensus 93 ~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~---- 167 (398)
T COG1373 93 REKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI---- 167 (398)
T ss_pred cCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc----
Confidence 178899999999999998887776666666 8999887765433221 2233489999999999876543111
Q ss_pred CCChhhHHHHHHHHHHhCCCchHHHHH
Q 045458 209 QPVGEYVELSERVLEYAGGLPLALKVL 235 (1170)
Q Consensus 209 ~~~~~~~~~~~~i~~~~~GlPLal~~l 235 (1170)
... .. ...-+-.-..||.|-++..-
T Consensus 168 ~~~-~~-~~~f~~Yl~~GGfP~~v~~~ 192 (398)
T COG1373 168 EPS-KL-ELLFEKYLETGGFPESVKAD 192 (398)
T ss_pred chh-HH-HHHHHHHHHhCCCcHHHhCc
Confidence 000 11 11222334578999887543
No 181
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.21 E-value=0.0078 Score=66.89 Aligned_cols=154 Identities=23% Similarity=0.292 Sum_probs=82.5
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhh-ccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHH
Q 045458 49 SDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKS-EKEGSVISLQKQLLSNLLKLGDISIWHVEDGINII 127 (1170)
Q Consensus 49 ~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i 127 (1170)
.-++.++|||++|.|||.+|++++.++...| +..+..+.. ...+..+...+++...... ..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~----i~vsa~eL~sk~vGEsEk~IR~~F~~A~~--------------~a 207 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP----IVMSAGELESENAGEPGKLIRQRYREAAD--------------II 207 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe----EEEEHHHhhcCcCCcHHHHHHHHHHHHHH--------------Hh
Confidence 4468999999999999999999999876442 222222221 2222223333333332210 00
Q ss_pred HHhhCCCeEEEEEeCCCCH------------HHH--HHhhcCcC----------C----CCCCcEEEEEeCCchhhhhhC
Q 045458 128 GSRLRQKKVLLIIDDVADV------------EQL--QSLAGKRD----------W----FGPGSRILITTRDKQLLVAHE 179 (1170)
Q Consensus 128 ~~~L~~k~~LlVLDdv~~~------------~~l--~~l~~~~~----------~----~~~gsrIIiTTR~~~v~~~~~ 179 (1170)
.-++++.+|++|++|.. .++ ..++...+ | ..++.-||+||.+...+...-
T Consensus 208 --~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpAL 285 (413)
T PLN00020 208 --KKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPL 285 (413)
T ss_pred --hccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhH
Confidence 01468999999998532 111 12221110 1 245677889997766433321
Q ss_pred -----CCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCch
Q 045458 180 -----VDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPL 230 (1170)
Q Consensus 180 -----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 230 (1170)
++. .| ..-+.++-.+++..+.-+. ... ..-..++++...|-|+
T Consensus 286 lRpGRfDk--~i--~lPd~e~R~eIL~~~~r~~-~l~---~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 286 IRDGRMEK--FY--WAPTREDRIGVVHGIFRDD-GVS---REDVVKLVDTFPGQPL 333 (413)
T ss_pred cCCCCCCc--ee--CCCCHHHHHHHHHHHhccC-CCC---HHHHHHHHHcCCCCCc
Confidence 222 33 3456677777776555332 221 1334456666666554
No 182
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.19 E-value=0.002 Score=69.18 Aligned_cols=49 Identities=18% Similarity=0.205 Sum_probs=32.9
Q ss_pred HHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEE
Q 045458 37 LEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFL 85 (1170)
Q Consensus 37 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 85 (1170)
+..+.+....-......+.++|.+|+|||+||.++++.+..+-..++++
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i 133 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII 133 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 3444444432222345788999999999999999999876554444444
No 183
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.19 E-value=0.006 Score=69.56 Aligned_cols=136 Identities=15% Similarity=0.218 Sum_probs=81.2
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHH
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGS 129 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~ 129 (1170)
....+.|||..|.|||.|++++.+......+...++... + ......+...+. +...+.+++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~---s------e~f~~~~v~a~~----------~~~~~~Fk~ 172 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT---S------EDFTNDFVKALR----------DNEMEKFKE 172 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc---H------HHHHHHHHHHHH----------hhhHHHHHH
Confidence 367899999999999999999999887776643333210 1 233333333332 133455666
Q ss_pred hhCCCeEEEEEeCCCCHH---H-HHHhhcCcC-CCCCCcEEEEEeCCchhhhhh-------CCCCccEEECCCCChHHHH
Q 045458 130 RLRQKKVLLIIDDVADVE---Q-LQSLAGKRD-WFGPGSRILITTRDKQLLVAH-------EVDEEHILNLDVLNNDEAL 197 (1170)
Q Consensus 130 ~L~~k~~LlVLDdv~~~~---~-l~~l~~~~~-~~~~gsrIIiTTR~~~v~~~~-------~~~~~~~~~l~~L~~~ea~ 197 (1170)
.. .-=++++||++-.. . -+++...+. ....|-+||+|++...-.-.. ...-.-++++.+.+.+...
T Consensus 173 ~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ 250 (408)
T COG0593 173 KY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRL 250 (408)
T ss_pred hh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHH
Confidence 66 33488899985321 1 122221111 113455899999654311110 0111238999999999999
Q ss_pred HHHHHhhcC
Q 045458 198 QLFSMKAFK 206 (1170)
Q Consensus 198 ~Lf~~~a~~ 206 (1170)
..+..++..
T Consensus 251 aiL~kka~~ 259 (408)
T COG0593 251 AILRKKAED 259 (408)
T ss_pred HHHHHHHHh
Confidence 999887643
No 184
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.18 E-value=0.0031 Score=80.30 Aligned_cols=51 Identities=22% Similarity=0.410 Sum_probs=38.5
Q ss_pred ccccchhhHHHHHHHHcC----CCCCeEEEEEEeCCCccHHHHHHHHHhhhcccc
Q 045458 29 ELVGIESRLEKIRFLMGT----GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEF 79 (1170)
Q Consensus 29 ~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f 79 (1170)
..+|.+...+.|.+++.. +....+++.++|++|+|||++|+.+++.+...|
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 477888888888775532 222345789999999999999999999875443
No 185
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0022 Score=75.99 Aligned_cols=161 Identities=20% Similarity=0.277 Sum_probs=93.9
Q ss_pred CccccchhhHHHHHHHHcCC----CCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHH
Q 045458 28 KELVGIESRLEKIRFLMGTG----SSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQK 103 (1170)
Q Consensus 28 ~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 103 (1170)
.+-.|.++-.++|.+.|... .-.-++++++|++|+|||.||+.+++.....|-. +-+--+|+.++-.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR-~sLGGvrDEAEIR-------- 393 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVR-ISLGGVRDEAEIR-------- 393 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEE-EecCccccHHHhc--------
Confidence 34788888888888777432 1234799999999999999999999988777632 1122233332221
Q ss_pred HHHHHHhhcCCCccccchhh-HHHHHHhhCCCeEEEEEeCCCCHH----------HHHHhhcCcC-CCC--------CCc
Q 045458 104 QLLSNLLKLGDISIWHVEDG-INIIGSRLRQKKVLLIIDDVADVE----------QLQSLAGKRD-WFG--------PGS 163 (1170)
Q Consensus 104 ~ll~~l~~~~~~~~~~~~~~-~~~i~~~L~~k~~LlVLDdv~~~~----------~l~~l~~~~~-~~~--------~gs 163 (1170)
+....-+...+.. ++.++ ..+.+.-|++||.+|... -+|.|.+... .|. .=|
T Consensus 394 -------GHRRTYIGamPGrIiQ~mk-ka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS 465 (782)
T COG0466 394 -------GHRRTYIGAMPGKIIQGMK-KAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLS 465 (782)
T ss_pred -------cccccccccCChHHHHHHH-HhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchh
Confidence 1222222222222 22222 234567799999997542 1333332211 011 012
Q ss_pred -EEEEEeCC-chhhhhhCCCCccEEECCCCChHHHHHHHHHhhc
Q 045458 164 -RILITTRD-KQLLVAHEVDEEHILNLDVLNNDEALQLFSMKAF 205 (1170)
Q Consensus 164 -rIIiTTR~-~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 205 (1170)
-+.|||-+ -.-....-.+...++++.+.+++|-.+.-..|..
T Consensus 466 ~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred heEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 23445543 2312223356667999999999999888887763
No 186
>PRK08181 transposase; Validated
Probab=97.13 E-value=0.0022 Score=70.00 Aligned_cols=35 Identities=20% Similarity=0.095 Sum_probs=27.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
.-+.++|.+|+|||.||.++.+....+.-.+.|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 45899999999999999999987765533345544
No 187
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.11 E-value=0.0015 Score=64.09 Aligned_cols=28 Identities=39% Similarity=0.358 Sum_probs=24.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhcccc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYEF 79 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~f 79 (1170)
+.+.|+|.+|+||||+|+.++..+....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~ 30 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG 30 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC
Confidence 5789999999999999999998776554
No 188
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.11 E-value=0.00046 Score=52.22 Aligned_cols=40 Identities=35% Similarity=0.609 Sum_probs=34.0
Q ss_pred CCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCcccc
Q 045458 775 YSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVSLP 816 (1170)
Q Consensus 775 ~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~lp 816 (1170)
++|+.|++++|++.+ +|..++.|++|+.|++++|+++.++
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCCCCc
Confidence 469999999999965 7777999999999999999999876
No 189
>PRK10536 hypothetical protein; Provisional
Probab=97.07 E-value=0.0029 Score=67.33 Aligned_cols=137 Identities=13% Similarity=0.165 Sum_probs=74.3
Q ss_pred CccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhh-h-ccccCceeEEEecchhhc----cCCcHHHH
Q 045458 28 KELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDS-M-SYEFDGSSFLADVREKSE----KEGSVISL 101 (1170)
Q Consensus 28 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~-~-~~~f~~~~~~~~~~~~~~----~~~~~~~l 101 (1170)
..+.++......+..++... .+|.+.|.+|.|||+||.+++.+ + ...|...+.....-...+ -+|...+-
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK 130 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEK 130 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHH
Confidence 45678888888888888642 48999999999999999998874 3 344543333221111111 12222221
Q ss_pred H----HHHHHHHhhcCCCccccchhhHH--------HHHHhhCCCeE---EEEEeCCCCH--HHHHHhhcCcCCCCCCcE
Q 045458 102 Q----KQLLSNLLKLGDISIWHVEDGIN--------IIGSRLRQKKV---LLIIDDVADV--EQLQSLAGKRDWFGPGSR 164 (1170)
Q Consensus 102 ~----~~ll~~l~~~~~~~~~~~~~~~~--------~i~~~L~~k~~---LlVLDdv~~~--~~l~~l~~~~~~~~~gsr 164 (1170)
. .-+...+...-+. ........ .-...++++.+ +||+|.+.+. .+...+.. ..+.+|+
T Consensus 131 ~~p~~~pi~D~L~~~~~~--~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~lt---R~g~~sk 205 (262)
T PRK10536 131 FAPYFRPVYDVLVRRLGA--SFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLT---RLGENVT 205 (262)
T ss_pred HHHHHHHHHHHHHHHhCh--HHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHh---hcCCCCE
Confidence 1 1122222110000 00000000 00124456544 9999999654 45555543 3479999
Q ss_pred EEEEeCCch
Q 045458 165 ILITTRDKQ 173 (1170)
Q Consensus 165 IIiTTR~~~ 173 (1170)
+|+|--..+
T Consensus 206 ~v~~GD~~Q 214 (262)
T PRK10536 206 VIVNGDITQ 214 (262)
T ss_pred EEEeCChhh
Confidence 999876544
No 190
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.06 E-value=0.037 Score=61.88 Aligned_cols=179 Identities=13% Similarity=0.080 Sum_probs=95.8
Q ss_pred hHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccC--ceeEE-Eecchh-hccCCcHHHHHHHHHHHHhh
Q 045458 36 RLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFD--GSSFL-ADVREK-SEKEGSVISLQKQLLSNLLK 111 (1170)
Q Consensus 36 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~-~~~~~~-~~~~~~~~~l~~~ll~~l~~ 111 (1170)
..+++.+.+..+ .-...+.++|+.|+||+++|+.++..+--.-. ..|=. ...+.. ...+..+.. +..
T Consensus 11 ~~~~l~~~~~~~-rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~--------i~p 81 (319)
T PRK06090 11 VWQNWKAGLDAG-RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHV--------IKP 81 (319)
T ss_pred HHHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEE--------Eec
Confidence 445666666543 23468899999999999999999875421100 00000 000000 000000000 000
Q ss_pred cCCCccccchhhHHHHHHhh-----CCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCCch-hhhhhCCCCc
Q 045458 112 LGDISIWHVEDGINIIGSRL-----RQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRDKQ-LLVAHEVDEE 183 (1170)
Q Consensus 112 ~~~~~~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~~~~~~ 183 (1170)
.+....-.+++. ..+.+.+ .+++=++|+|+++.. ....++...+..-.+++.+|++|.+.. ++.. -...-
T Consensus 82 ~~~~~~I~vdqi-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpT-I~SRC 159 (319)
T PRK06090 82 EKEGKSITVEQI-RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPT-IVSRC 159 (319)
T ss_pred CcCCCcCCHHHH-HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHH-HHhcc
Confidence 000000011111 1122222 234457889999765 345555555544467787777776654 3332 23334
Q ss_pred cEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHH
Q 045458 184 HILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVL 235 (1170)
Q Consensus 184 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 235 (1170)
+.+.+.+++.+++.+.+.... .. .+..+++.++|.|+....+
T Consensus 160 q~~~~~~~~~~~~~~~L~~~~-----~~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 160 QQWVVTPPSTAQAMQWLKGQG-----IT-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred eeEeCCCCCHHHHHHHHHHcC-----Cc-----hHHHHHHHcCCCHHHHHHH
Confidence 589999999999999987542 11 1356789999999876554
No 191
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.04 E-value=0.019 Score=65.00 Aligned_cols=180 Identities=13% Similarity=0.067 Sum_probs=96.1
Q ss_pred hhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccc--c---CceeEEEecchh-hccCCcHHHHHHHHHHH
Q 045458 35 SRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE--F---DGSSFLADVREK-SEKEGSVISLQKQLLSN 108 (1170)
Q Consensus 35 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~--f---~~~~~~~~~~~~-~~~~~~~~~l~~~ll~~ 108 (1170)
...+++.+.+..+ .-...+.++|+.|+||+++|..++..+--. - .++.= ...+.. ...+..+..
T Consensus 9 ~~~~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C-~sC~~~~~g~HPD~~~-------- 78 (334)
T PRK07993 9 PDYEQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHC-RGCQLMQAGTHPDYYT-------- 78 (334)
T ss_pred HHHHHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCC-HHHHHHHcCCCCCEEE--------
Confidence 3456666766643 235788899999999999999998764221 0 00000 000000 000000000
Q ss_pred HhhcCCCccccchhhHHHHHHhh-----CCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCCch-hhhhhCC
Q 045458 109 LLKLGDISIWHVEDGINIIGSRL-----RQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRDKQ-LLVAHEV 180 (1170)
Q Consensus 109 l~~~~~~~~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~~~ 180 (1170)
+....+...-.+++.. .+.+.+ .+++=++|+|+++.. +.-..++..+..-.+++.+|++|.+.. ++.. -.
T Consensus 79 i~p~~~~~~I~idqiR-~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpT-Ir 156 (334)
T PRK07993 79 LTPEKGKSSLGVDAVR-EVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLAT-LR 156 (334)
T ss_pred EecccccccCCHHHHH-HHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHH-HH
Confidence 0000000000111111 122222 245668899999765 334555554444467788877777654 3322 12
Q ss_pred CCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHH
Q 045458 181 DEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALK 233 (1170)
Q Consensus 181 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 233 (1170)
...+.+.+.+++.+++.+.+.... . ...+.+..+++.++|.|....
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~---~----~~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 157 SRCRLHYLAPPPEQYALTWLSREV---T----MSQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred hccccccCCCCCHHHHHHHHHHcc---C----CCHHHHHHHHHHcCCCHHHHH
Confidence 223478999999999999886532 1 112346788999999996443
No 192
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.00 E-value=0.029 Score=64.20 Aligned_cols=77 Identities=14% Similarity=0.208 Sum_probs=49.7
Q ss_pred hhhHHHHHHHHcCCC-CCeEEEEEEeCCCccHHHHHHHHHhhhccc--cCceeEEEecchhhccCCcHHHHHHHHHHHHh
Q 045458 34 ESRLEKIRFLMGTGS-SDVRMIGIWGMGGLGKTTLARVVYDSMSYE--FDGSSFLADVREKSEKEGSVISLQKQLLSNLL 110 (1170)
Q Consensus 34 ~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 110 (1170)
+.-.+.|.+.+.... ....+|+|.|.-|.||||+.+.+.+.+... -...+...+.+...........+..++..++.
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l~ 81 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQLE 81 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHHH
Confidence 344566777776543 567899999999999999999999887766 12223333344444433444555555555443
No 193
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.96 E-value=0.00023 Score=87.71 Aligned_cols=126 Identities=25% Similarity=0.257 Sum_probs=80.5
Q ss_pred CCcccEEEecCCCCC-CccccccCCCCCCcEEEecCccCCccCcchhcCCCCCEEeccCCCCCC-cCccccCCCCcccEE
Q 045458 538 MKSVKKLVLSGCSKL-KKFPKIVGNMECLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFK-NLPVTISSLKCLRSL 615 (1170)
Q Consensus 538 l~~L~~L~L~~~~~~-~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L 615 (1170)
+|+|+.|.+.|-... ..+.....++++|..|+++++++..+ ..++.|++|+.|.+.+-.... .--..+.+|++|+.|
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 677777777664332 23445566788899999999988888 678888888888887754332 111246678888888
Q ss_pred EeeCCCCCCCc------chhhcCCcccCeEeccCcCCCc--cCccccCCCCCCEEec
Q 045458 616 VLSGCSKLKKF------PEIVESMEDLSELFLDGTSITE--VPSSIELLTGLNVLNL 664 (1170)
Q Consensus 616 ~L~~~~~~~~~------p~~~~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~L 664 (1170)
++|........ -+....+|+|+.|+.+++.+.+ +-..+...++|+.+.+
T Consensus 226 DIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~ 282 (699)
T KOG3665|consen 226 DISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAA 282 (699)
T ss_pred eccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhh
Confidence 88876544332 2223457788888888777662 2222334444544443
No 194
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.92 E-value=0.00046 Score=85.16 Aligned_cols=132 Identities=30% Similarity=0.348 Sum_probs=85.3
Q ss_pred CCCCEEeccCCCCCC-cCccccC-CCCcccEEEeeCCCCCC-CcchhhcCCcccCeEeccCcCCCccCccccCCCCCCEE
Q 045458 586 SKLVSLDLNNCKNFK-NLPVTIS-SLKCLRSLVLSGCSKLK-KFPEIVESMEDLSELFLDGTSITEVPSSIELLTGLNVL 662 (1170)
Q Consensus 586 ~~L~~L~L~~~~~l~-~lp~~l~-~l~~L~~L~L~~~~~~~-~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 662 (1170)
.+|++|++++...+. ..|..++ .+|+|+.|.+.+-.... .+.....++++|..|++++++++.+ ..++++++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 466666666644332 2233333 47888888888754432 3555667888899999999988888 778889999988
Q ss_pred eccCCcCCcc-ccccCCCCCCCCEEEeeCcCCCCCC------ccccCCCCCCcEEEccCccCC
Q 045458 663 NLNDCKNLVR-IPDSINGLKSLQSLNLSGCFKLENV------PETLGQVESLEELHISGTAIR 718 (1170)
Q Consensus 663 ~L~~~~~l~~-lp~~l~~l~~L~~L~L~~c~~l~~l------~~~l~~l~~L~~L~L~~~~i~ 718 (1170)
.+.+-..... --..+.+|++|+.||+|.-...... -+....+|+|+.||.+++.+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 8877554431 1123566888888888876544321 112223667777777766654
No 195
>PRK09183 transposase/IS protein; Provisional
Probab=96.90 E-value=0.0028 Score=69.24 Aligned_cols=27 Identities=30% Similarity=0.271 Sum_probs=22.7
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
..+.|+|.+|+|||+||.++......+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~ 129 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRA 129 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 568899999999999999998765433
No 196
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.89 E-value=0.011 Score=71.59 Aligned_cols=50 Identities=26% Similarity=0.535 Sum_probs=39.7
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhh
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDS 74 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~ 74 (1170)
.|...++++|.+..++.+...+.. ....-|.|+|.+|+|||++|+.+++.
T Consensus 60 rp~~f~~iiGqs~~i~~l~~al~~--~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 60 RPKSFDEIIGQEEGIKALKAALCG--PNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred CcCCHHHeeCcHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 444556799999999999877643 23345679999999999999999874
No 197
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.89 E-value=0.053 Score=61.33 Aligned_cols=92 Identities=17% Similarity=0.237 Sum_probs=59.2
Q ss_pred CCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCCch-hhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCC
Q 045458 133 QKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRDKQ-LLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQ 209 (1170)
Q Consensus 133 ~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 209 (1170)
+++=++|+|+++.. +....++..+..-.+++.+|++|.+.. ++.. -....+.+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpT-I~SRcq~i~~~~~~~~~~~~~L~~~~----~ 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPT-ILSRCRQFPMTVPAPEAAAAWLAAQG----V 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHH-HHhcCEEEEecCCCHHHHHHHHHHcC----C
Confidence 34557889999765 445666555555567787777666644 3332 22333589999999999999997642 1
Q ss_pred CChhhHHHHHHHHHHhCCCchHHHHH
Q 045458 210 PVGEYVELSERVLEYAGGLPLALKVL 235 (1170)
Q Consensus 210 ~~~~~~~~~~~i~~~~~GlPLal~~l 235 (1170)
.+ ...++..++|.|+....+
T Consensus 206 -~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 -AD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred -Ch-----HHHHHHHcCCCHHHHHHH
Confidence 11 123577889999755444
No 198
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.87 E-value=0.0047 Score=72.59 Aligned_cols=191 Identities=18% Similarity=0.228 Sum_probs=109.7
Q ss_pred CCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccc----cCceeEEEecchhhccCCcHH
Q 045458 24 PETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE----FDGSSFLADVREKSEKEGSVI 99 (1170)
Q Consensus 24 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~----f~~~~~~~~~~~~~~~~~~~~ 99 (1170)
|..-+++||-+.-.+.|...+..+. -...-...|+-|+||||+|+-++..+-.. .+.+.--...++. ..+...
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I--~~g~~~ 88 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEI--NEGSLI 88 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhh--hcCCcc
Confidence 4445678999999999999987642 23556789999999999999998754221 1100000000000 000000
Q ss_pred HHHHHHHHHHhhcCCCccccchhhHHHHHHhh-----CCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCCc
Q 045458 100 SLQKQLLSNLLKLGDISIWHVEDGINIIGSRL-----RQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRDK 172 (1170)
Q Consensus 100 ~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~ 172 (1170)
++. ++....+. .+++. +.|.+.. ++|.=+.|+|.|.-. ..+.+++..+..-.++...|..|++.
T Consensus 89 Dvi-----EiDaASn~---gVddi-R~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~ 159 (515)
T COG2812 89 DVI-----EIDAASNT---GVDDI-REIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEP 159 (515)
T ss_pred cch-----hhhhhhcc---ChHHH-HHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCc
Confidence 000 00000011 12222 2222222 245558889999654 56888877766556778878888776
Q ss_pred hhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCC
Q 045458 173 QLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGL 228 (1170)
Q Consensus 173 ~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 228 (1170)
+-....-....+.|.++.++.++-...+...+-... .....+...-|++..+|-
T Consensus 160 ~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~--I~~e~~aL~~ia~~a~Gs 213 (515)
T COG2812 160 QKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEG--INIEEDALSLIARAAEGS 213 (515)
T ss_pred CcCchhhhhccccccccCCCHHHHHHHHHHHHHhcC--CccCHHHHHHHHHHcCCC
Confidence 643333344556899999999999888887764332 223334455555666553
No 199
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.86 E-value=0.002 Score=66.05 Aligned_cols=36 Identities=22% Similarity=0.228 Sum_probs=26.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
..-+.|+|..|+|||.||.++.+.+..+--.+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 467899999999999999999987655433355554
No 200
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.86 E-value=0.023 Score=61.89 Aligned_cols=208 Identities=17% Similarity=0.128 Sum_probs=108.4
Q ss_pred cCccccchhh---HHHHHHHHcCC-CCCeEEEEEEeCCCccHHHHHHHHHhhhccccCcee-EEEecchhhccCCcHHHH
Q 045458 27 IKELVGIESR---LEKIRFLMGTG-SSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSS-FLADVREKSEKEGSVISL 101 (1170)
Q Consensus 27 ~~~~vGr~~~---~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~-~~~~~~~~~~~~~~~~~l 101 (1170)
.+..||-... ++.|.+++... ....+-+.|+|.+|+|||++++++.+.....++... .+..+.-..........+
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~ 112 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRF 112 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHH
Confidence 3456776543 45566666543 234577999999999999999999986544443221 011111112233334788
Q ss_pred HHHHHHHHhhcCCCccccchhhHHHHHHhhCC-CeEEEEEeCCCCH-----HHHHHhhcCcCCCC---CCcEEEEEeCCc
Q 045458 102 QKQLLSNLLKLGDISIWHVEDGINIIGSRLRQ-KKVLLIIDDVADV-----EQLQSLAGKRDWFG---PGSRILITTRDK 172 (1170)
Q Consensus 102 ~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~-k~~LlVLDdv~~~-----~~l~~l~~~~~~~~---~gsrIIiTTR~~ 172 (1170)
...|+..+...- ............+.+.++. +--+||+|.+.+. .+-..+...+...+ .-+-|.+-|++-
T Consensus 113 Y~~IL~~lgaP~-~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A 191 (302)
T PF05621_consen 113 YSAILEALGAPY-RPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREA 191 (302)
T ss_pred HHHHHHHhCccc-CCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHH
Confidence 888998886322 2223344444445555553 3448899999653 12122222222122 234455555443
Q ss_pred hhhhhhC---CCCccEEECCCCChHH-HHHHHHHhh--cCCCCC-ChhhHHHHHHHHHHhCCCchHHHHH
Q 045458 173 QLLVAHE---VDEEHILNLDVLNNDE-ALQLFSMKA--FKTHQP-VGEYVELSERVLEYAGGLPLALKVL 235 (1170)
Q Consensus 173 ~v~~~~~---~~~~~~~~l~~L~~~e-a~~Lf~~~a--~~~~~~-~~~~~~~~~~i~~~~~GlPLal~~l 235 (1170)
.-+.... ......+.++....++ ...|+.... ..-..+ .-...+++..|...++|+.--+..+
T Consensus 192 ~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 192 YRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred HHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 2111100 0111245666555544 344443221 111111 1234678999999999987555443
No 201
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.84 E-value=0.0024 Score=64.04 Aligned_cols=57 Identities=21% Similarity=0.308 Sum_probs=31.8
Q ss_pred CCceeEEEccCCChHHHhhcCCCCCCCcEEEcCCCCCCCcCCCCCC-CCCccEEEeecc
Q 045458 445 LDKTIEFKMLCSRIEELWKGIKSLNMLKVMKVSYSQSLIKIPDFTG-VPNLEKLYLEGC 502 (1170)
Q Consensus 445 l~~L~~L~L~~s~i~~L~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~-l~~L~~L~L~~~ 502 (1170)
......++|++|.+..+ ..+..+++|.+|.|+.|.....-|++.. +++|..|.|.+|
T Consensus 41 ~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 44455556666655555 3455566666666666665444455433 455666666654
No 202
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.019 Score=67.73 Aligned_cols=153 Identities=16% Similarity=0.232 Sum_probs=85.3
Q ss_pred CccccchhhHHHHHHHHcC-----------CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecc-h-hhcc
Q 045458 28 KELVGIESRLEKIRFLMGT-----------GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVR-E-KSEK 94 (1170)
Q Consensus 28 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~-~-~~~~ 94 (1170)
+++-|.|+...+|.+.+.- +-...+-|..+|++|+|||++|+++++.....| +..-. + .+..
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nF-----lsvkgpEL~sk~ 508 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNF-----LSVKGPELFSKY 508 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCe-----eeccCHHHHHHh
Confidence 4455677777777654422 224567889999999999999999999766554 22100 0 0111
Q ss_pred CCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH-------------HHHHhhcCcCCCCC
Q 045458 95 EGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVE-------------QLQSLAGKRDWFGP 161 (1170)
Q Consensus 95 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~-------------~l~~l~~~~~~~~~ 161 (1170)
.|.-+....++.++ .=+--+.+|.||.+|... -+..++...+-...
T Consensus 509 vGeSEr~ir~iF~k---------------------AR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~ 567 (693)
T KOG0730|consen 509 VGESERAIREVFRK---------------------ARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEA 567 (693)
T ss_pred cCchHHHHHHHHHH---------------------HhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccc
Confidence 11112222222222 222356788888875432 24445444443333
Q ss_pred C--cEEEEEeCCchhhhhhCCC---CccEEECCCCChHHHHHHHHHhhcC
Q 045458 162 G--SRILITTRDKQLLVAHEVD---EEHILNLDVLNNDEALQLFSMKAFK 206 (1170)
Q Consensus 162 g--srIIiTTR~~~v~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~a~~ 206 (1170)
. .-||-.|..+......-+. -+..+-++.-+.+-..++|+.++-+
T Consensus 568 ~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 568 LKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK 617 (693)
T ss_pred cCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc
Confidence 3 3334444333322222222 2237888888888899999998843
No 203
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.83 E-value=0.0048 Score=71.04 Aligned_cols=46 Identities=26% Similarity=0.229 Sum_probs=37.8
Q ss_pred CccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 28 KELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 28 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
.++++.+..++.+...+..+ +.|.++|++|+|||++|+++++.+..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45778888888888888643 46788999999999999999987643
No 204
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.81 E-value=0.0025 Score=71.77 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=28.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
..+.++|..|+|||+||.++++.+..+--.++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 66899999999999999999998765544455554
No 205
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.0068 Score=64.94 Aligned_cols=36 Identities=22% Similarity=0.412 Sum_probs=28.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhh----ccccCceeEEE
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSM----SYEFDGSSFLA 86 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~----~~~f~~~~~~~ 86 (1170)
-|+|.++|++|.|||+|.+++++++ .+.|..+..+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE 216 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE 216 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE
Confidence 4899999999999999999999964 34555555554
No 206
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.74 E-value=0.017 Score=63.53 Aligned_cols=37 Identities=27% Similarity=0.265 Sum_probs=26.6
Q ss_pred hHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 36 RLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 36 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
-++++...+..+ +-|.|+|.+|+|||++|+.++....
T Consensus 10 l~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 10 VTSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred HHHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 344455555432 3567899999999999999997553
No 207
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.72 E-value=0.029 Score=58.41 Aligned_cols=171 Identities=20% Similarity=0.279 Sum_probs=99.6
Q ss_pred cCccccchhhHH---HHHHHHcCCC----CCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHH
Q 045458 27 IKELVGIESRLE---KIRFLMGTGS----SDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVI 99 (1170)
Q Consensus 27 ~~~~vGr~~~~~---~l~~~L~~~~----~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 99 (1170)
.++.||.+.... -|.+.|.... -.++.|..+|++|.|||.+|++++++...- ++. +.
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp-----~l~-vk---------- 183 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP-----LLL-VK---------- 183 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc-----eEE-ec----------
Confidence 357889876554 3445554321 236889999999999999999999876532 232 10
Q ss_pred HHHHHHHHHHhhcCCCccccchhhHHHHHH----hhCCCeEEEEEeCCCCH--------------HHHHHhhcCcCCC--
Q 045458 100 SLQKQLLSNLLKLGDISIWHVEDGINIIGS----RLRQKKVLLIIDDVADV--------------EQLQSLAGKRDWF-- 159 (1170)
Q Consensus 100 ~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~----~L~~k~~LlVLDdv~~~--------------~~l~~l~~~~~~~-- 159 (1170)
. .+++.+. +.++..+|++ .-+.-++.+.+|.+|.. +...+++..++..
T Consensus 184 -a-t~liGeh----------VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~e 251 (368)
T COG1223 184 -A-TELIGEH----------VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKE 251 (368)
T ss_pred -h-HHHHHHH----------hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCccc
Confidence 0 1122221 1223333332 23457899999988543 2345555555432
Q ss_pred CCCcEEEEEeCCchhhhhhC-CCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCC
Q 045458 160 GPGSRILITTRDKQLLVAHE-VDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGL 228 (1170)
Q Consensus 160 ~~gsrIIiTTR~~~v~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 228 (1170)
+.|...|-.|.....+...- ..-..-++..--+.+|..+++..++-+-.-+.+.. .+.++.+++|.
T Consensus 252 neGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~---~~~~~~~t~g~ 318 (368)
T COG1223 252 NEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD---LRYLAAKTKGM 318 (368)
T ss_pred CCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC---HHHHHHHhCCC
Confidence 35666666676665543321 11123678888899999999999884333332221 34556666654
No 208
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.70 E-value=0.0092 Score=75.24 Aligned_cols=183 Identities=14% Similarity=0.179 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHHHHhhcc-cCCC-----------ccCccccchhhHHHHHHHHcC----CCCCeEEEEEEeCCCccHHHH
Q 045458 4 NESEFIEEIVNVISSKIH-TEPE-----------TIKELVGIESRLEKIRFLMGT----GSSDVRMIGIWGMGGLGKTTL 67 (1170)
Q Consensus 4 ~e~~~i~~i~~~i~~~l~-~~~~-----------~~~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtL 67 (1170)
.|+.++..-++-+..--. .... ...+.+|.+...+.|.+++.. +.....+++++|++|+||||+
T Consensus 286 ~e~~~~~~yl~~~~~~pw~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl 365 (784)
T PRK10787 286 AEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSL 365 (784)
T ss_pred chHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHH
Confidence 456666666666555222 1111 123489999988888877653 112346899999999999999
Q ss_pred HHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCcccc-chhhHHHHHHhhCCCeEEEEEeCCCCH
Q 045458 68 ARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWH-VEDGINIIGSRLRQKKVLLIIDDVADV 146 (1170)
Q Consensus 68 A~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~-~~~~~~~i~~~L~~k~~LlVLDdv~~~ 146 (1170)
|+.++......|-... +..+++.. ++.. ....-... .....+.+++.-. ..-+++||.++..
T Consensus 366 ~~~ia~~l~~~~~~i~-~~~~~d~~-----------~i~g----~~~~~~g~~~G~~~~~l~~~~~-~~~villDEidk~ 428 (784)
T PRK10787 366 GQSIAKATGRKYVRMA-LGGVRDEA-----------EIRG----HRRTYIGSMPGKLIQKMAKVGV-KNPLFLLDEIDKM 428 (784)
T ss_pred HHHHHHHhCCCEEEEE-cCCCCCHH-----------Hhcc----chhccCCCCCcHHHHHHHhcCC-CCCEEEEEChhhc
Confidence 9999987654432111 11111110 1100 00000001 1112222332222 3346889999654
Q ss_pred HH------HHHhhcCcCC---------------CCCCcEEEEEeCCchhhhhhCCCCccEEECCCCChHHHHHHHHHhh
Q 045458 147 EQ------LQSLAGKRDW---------------FGPGSRILITTRDKQLLVAHEVDEEHILNLDVLNNDEALQLFSMKA 204 (1170)
Q Consensus 147 ~~------l~~l~~~~~~---------------~~~gsrIIiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 204 (1170)
.. ..++...++. .-....+|.|+....+..+ -.+...++++.+++.+|-.++...+.
T Consensus 429 ~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~a-Ll~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 429 SSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAP-LLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred ccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHH-HhcceeeeecCCCCHHHHHHHHHHhh
Confidence 21 2333332221 0134445556655433222 23444589999999999988887766
No 209
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.02 Score=66.56 Aligned_cols=154 Identities=18% Similarity=0.212 Sum_probs=87.4
Q ss_pred cCccccchhhHHHHHHHHcC----------CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCC
Q 045458 27 IKELVGIESRLEKIRFLMGT----------GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEG 96 (1170)
Q Consensus 27 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 96 (1170)
..++-|++..+++|.+++.. +-...|=|.++|++|+|||.||++++.+..-- |+.. ..
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP-----f~~i-sA------ 256 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP-----FLSI-SA------ 256 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc-----eEee-cc------
Confidence 36788999999999877643 11335778999999999999999999876532 3331 00
Q ss_pred cHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH------H-------HHHhhcCcC------
Q 045458 97 SVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVE------Q-------LQSLAGKRD------ 157 (1170)
Q Consensus 97 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~------~-------l~~l~~~~~------ 157 (1170)
.++.+.+. ........+.+.+.-+.-++++++|++|... | ...|....+
T Consensus 257 ------peivSGvS------GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~ 324 (802)
T KOG0733|consen 257 ------PEIVSGVS------GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEK 324 (802)
T ss_pred ------hhhhcccC------cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccc
Confidence 01112111 1122223334445556789999999996431 0 222222221
Q ss_pred CCCCCcEEEEEe-CCchhhhhhCC--CCccEEECCCCChHHHHHHHHHhh
Q 045458 158 WFGPGSRILITT-RDKQLLVAHEV--DEEHILNLDVLNNDEALQLFSMKA 204 (1170)
Q Consensus 158 ~~~~gsrIIiTT-R~~~v~~~~~~--~~~~~~~l~~L~~~ea~~Lf~~~a 204 (1170)
.+|.+.-||-+| |...+..+..- .-.+-|.+.--++.+..+.++..+
T Consensus 325 ~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~ 374 (802)
T KOG0733|consen 325 TKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIIC 374 (802)
T ss_pred cCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHH
Confidence 224444455444 44333222211 112367777777777777776655
No 210
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.017 Score=68.30 Aligned_cols=162 Identities=17% Similarity=0.175 Sum_probs=84.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSR 130 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~ 130 (1170)
...|.|.|..|+|||+||+++++.+... ..+++.-+.........+..+|+.+- ..+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~--~~~hv~~v~Cs~l~~~~~e~iQk~l~------------------~vfse~ 490 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKD--LIAHVEIVSCSTLDGSSLEKIQKFLN------------------NVFSEA 490 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccc--cceEEEEEechhccchhHHHHHHHHH------------------HHHHHH
Confidence 4678999999999999999999987643 33343322222112222344444432 234456
Q ss_pred hCCCeEEEEEeCCCCHH--------H-------HHHhh-cCcCCC-CCCcE--EEEEeCCchhhhhhCCCC---ccEEEC
Q 045458 131 LRQKKVLLIIDDVADVE--------Q-------LQSLA-GKRDWF-GPGSR--ILITTRDKQLLVAHEVDE---EHILNL 188 (1170)
Q Consensus 131 L~~k~~LlVLDdv~~~~--------~-------l~~l~-~~~~~~-~~gsr--IIiTTR~~~v~~~~~~~~---~~~~~l 188 (1170)
+...+-+|||||++-.. | +..+. .....+ ..+.+ +|.|.....-....-+.. .....+
T Consensus 491 ~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L 570 (952)
T KOG0735|consen 491 LWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIAL 570 (952)
T ss_pred HhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEec
Confidence 67789999999985431 1 11111 000111 22333 344444332222111111 136889
Q ss_pred CCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCC-chHHHH
Q 045458 189 DVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGL-PLALKV 234 (1170)
Q Consensus 189 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~ 234 (1170)
+.++..+..++++... ..... ....+...-+..+|+|. |.-+++
T Consensus 571 ~ap~~~~R~~IL~~~~-s~~~~-~~~~~dLd~ls~~TEGy~~~DL~i 615 (952)
T KOG0735|consen 571 PAPAVTRRKEILTTIF-SKNLS-DITMDDLDFLSVKTEGYLATDLVI 615 (952)
T ss_pred CCcchhHHHHHHHHHH-Hhhhh-hhhhHHHHHHHHhcCCccchhHHH
Confidence 9999998888887554 22221 11112222366677763 444444
No 211
>PRK06526 transposase; Provisional
Probab=96.68 E-value=0.0035 Score=68.04 Aligned_cols=28 Identities=25% Similarity=0.106 Sum_probs=23.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
.+-+.|+|.+|+|||+||.++......+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 3568999999999999999998876543
No 212
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.67 E-value=0.0081 Score=67.14 Aligned_cols=54 Identities=17% Similarity=0.155 Sum_probs=35.2
Q ss_pred chhhHHHHHHHHcCCC--CCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 33 IESRLEKIRFLMGTGS--SDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 33 r~~~~~~l~~~L~~~~--~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
+...++....++.... ...+-+.|+|..|+|||.||.++++.+..+--.+.|+.
T Consensus 136 ~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 136 RLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred HHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 3333344444444211 13467899999999999999999998765433355554
No 213
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.017 Score=65.83 Aligned_cols=132 Identities=18% Similarity=0.176 Sum_probs=77.2
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHH
Q 045458 49 SDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIG 128 (1170)
Q Consensus 49 ~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~ 128 (1170)
.....+.+.|++|.|||+||..++. ...|+.+-.++ . ...-+.-+.. -.......+.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~--~S~FPFvKiiS---p-e~miG~sEsa-----------------Kc~~i~k~F~ 592 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL--SSDFPFVKIIS---P-EDMIGLSESA-----------------KCAHIKKIFE 592 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh--hcCCCeEEEeC---h-HHccCccHHH-----------------HHHHHHHHHH
Confidence 3456788999999999999999986 45777544443 1 1111110000 0001112233
Q ss_pred HhhCCCeEEEEEeCCCCHHHH------------HHhhcCcCC---CCCCcEEEEEeCCchhhhhhCCCCc--cEEECCCC
Q 045458 129 SRLRQKKVLLIIDDVADVEQL------------QSLAGKRDW---FGPGSRILITTRDKQLLVAHEVDEE--HILNLDVL 191 (1170)
Q Consensus 129 ~~L~~k~~LlVLDdv~~~~~l------------~~l~~~~~~---~~~gsrIIiTTR~~~v~~~~~~~~~--~~~~l~~L 191 (1170)
+.-+..--.||+||++..-+| +++...+.. .|..--|+-||..+.++..+++... ..|.|+.+
T Consensus 593 DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl 672 (744)
T KOG0741|consen 593 DAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNL 672 (744)
T ss_pred HhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCcc
Confidence 444556678999999765443 333322222 2223345667777888887764321 27999999
Q ss_pred Ch-HHHHHHHHHh
Q 045458 192 NN-DEALQLFSMK 203 (1170)
Q Consensus 192 ~~-~ea~~Lf~~~ 203 (1170)
+. ++..+.++..
T Consensus 673 ~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 673 TTGEQLLEVLEEL 685 (744)
T ss_pred CchHHHHHHHHHc
Confidence 88 6777776643
No 214
>PRK06921 hypothetical protein; Provisional
Probab=96.61 E-value=0.0027 Score=69.54 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=28.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhccc-cCceeEEE
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSYE-FDGSSFLA 86 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 86 (1170)
...+.++|..|+|||+||.++++.+..+ ...++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4678999999999999999999987655 33355554
No 215
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.58 E-value=0.0087 Score=60.39 Aligned_cols=134 Identities=18% Similarity=0.211 Sum_probs=71.8
Q ss_pred cchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccc--------------------cCceeEEEecchh
Q 045458 32 GIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE--------------------FDGSSFLADVREK 91 (1170)
Q Consensus 32 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~--------------------f~~~~~~~~~~~~ 91 (1170)
|-+...+.|..++..+ .-...+.++|..|+||+++|..+++.+-.. .+...++..
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~---- 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP---- 75 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET----
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec----
Confidence 5566777888887653 234678999999999999999999864221 112222210
Q ss_pred hccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhh-----CCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcE
Q 045458 92 SEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRL-----RQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSR 164 (1170)
Q Consensus 92 ~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsr 164 (1170)
... ......++ +..+.+.+ .+++=++|+||++.. +...+++..+....++++
T Consensus 76 ~~~--------------------~~~i~i~~-ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~ 134 (162)
T PF13177_consen 76 DKK--------------------KKSIKIDQ-IREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTY 134 (162)
T ss_dssp TTS--------------------SSSBSHHH-HHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEE
T ss_pred ccc--------------------cchhhHHH-HHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEE
Confidence 000 00001111 11222222 234558899999864 445666655555568899
Q ss_pred EEEEeCCchhhhhhCCCCccEEECCCC
Q 045458 165 ILITTRDKQLLVAHEVDEEHILNLDVL 191 (1170)
Q Consensus 165 IIiTTR~~~v~~~~~~~~~~~~~l~~L 191 (1170)
+|++|++..-....-......+.+.++
T Consensus 135 fiL~t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 135 FILITNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp EEEEES-GGGS-HHHHTTSEEEEE---
T ss_pred EEEEECChHHChHHHHhhceEEecCCC
Confidence 999998876322222222235666554
No 216
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.014 Score=69.07 Aligned_cols=161 Identities=18% Similarity=0.273 Sum_probs=88.9
Q ss_pred CccccchhhHHHHHHHHcCC----CCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHH
Q 045458 28 KELVGIESRLEKIRFLMGTG----SSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQK 103 (1170)
Q Consensus 28 ~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 103 (1170)
++-.|+++-.++|.+.+..+ +-+-.+++.+|++|+|||.+|+.++..+-..|-. ..+......
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfR----fSvGG~tDv--------- 477 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFR----FSVGGMTDV--------- 477 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEE----EeccccccH---------
Confidence 34789998888888877542 3345899999999999999999999987666531 112221110
Q ss_pred HHHHHHhhcCCCccccchh-hHHHHHHhhCCCeEEEEEeCCCCHH---------H-HHHhhcCcC-CC--------CCCc
Q 045458 104 QLLSNLLKLGDISIWHVED-GINIIGSRLRQKKVLLIIDDVADVE---------Q-LQSLAGKRD-WF--------GPGS 163 (1170)
Q Consensus 104 ~ll~~l~~~~~~~~~~~~~-~~~~i~~~L~~k~~LlVLDdv~~~~---------~-l~~l~~~~~-~~--------~~gs 163 (1170)
.++.+....-+...+. .++.++. .+-..-|+.||.||... . +|-+.+.-. .| -.=|
T Consensus 478 ---AeIkGHRRTYVGAMPGkiIq~LK~-v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLS 553 (906)
T KOG2004|consen 478 ---AEIKGHRRTYVGAMPGKIIQCLKK-VKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLS 553 (906)
T ss_pred ---HhhcccceeeeccCChHHHHHHHh-hCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchh
Confidence 0111112222222222 2222222 23456688899997542 1 222222110 00 0124
Q ss_pred EEE-EEeCC-chhhhhhCCCCccEEECCCCChHHHHHHHHHhhc
Q 045458 164 RIL-ITTRD-KQLLVAHEVDEEHILNLDVLNNDEALQLFSMKAF 205 (1170)
Q Consensus 164 rII-iTTR~-~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 205 (1170)
+|+ |.|-+ -.-....-.+...+|++.|...+|-.+.-.++..
T Consensus 554 kVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 554 KVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred heEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhh
Confidence 543 33322 2211222245556999999999998887777653
No 217
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.52 E-value=0.011 Score=64.40 Aligned_cols=37 Identities=22% Similarity=0.201 Sum_probs=27.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
+..-+.++|.+|+|||.||.++.+++...--.+.|+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4456899999999999999999999873322334443
No 218
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.50 E-value=0.0093 Score=64.12 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=37.3
Q ss_pred HHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 38 EKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 38 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
..|.++|..+-..-.++.|+|.+|+|||++|.+++......-..++|+.
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4455666544445689999999999999999999887655556677776
No 219
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.50 E-value=0.028 Score=64.21 Aligned_cols=149 Identities=16% Similarity=0.143 Sum_probs=80.7
Q ss_pred ccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCcee---------------EEEecchh--
Q 045458 29 ELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSS---------------FLADVREK-- 91 (1170)
Q Consensus 29 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~---------------~~~~~~~~-- 91 (1170)
.++|-+....++..+......-...+.++|++|+||||+|.++++.+-....... +..++.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 4677788888888877644333456999999999999999999987643321000 00011111
Q ss_pred hccCC--cHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHHH--HHHhhcCcCCCCCCcEEEE
Q 045458 92 SEKEG--SVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVEQ--LQSLAGKRDWFGPGSRILI 167 (1170)
Q Consensus 92 ~~~~~--~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~~--l~~l~~~~~~~~~gsrIIi 167 (1170)
+.... ...+..+++....... ...++.-++++|+++.... -.++........+.+++|+
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~-----------------~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il 144 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSES-----------------PLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFIL 144 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccC-----------------CCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEE
Confidence 11111 1122222222222100 0024667899999987643 4555555554567888888
Q ss_pred EeCCchhhhhhCCCCccEEECCCCChH
Q 045458 168 TTRDKQLLVAHEVDEEHILNLDVLNND 194 (1170)
Q Consensus 168 TTR~~~v~~~~~~~~~~~~~l~~L~~~ 194 (1170)
+|.+..-....-......+++.+.+..
T Consensus 145 ~~n~~~~il~tI~SRc~~i~f~~~~~~ 171 (325)
T COG0470 145 ITNDPSKILPTIRSRCQRIRFKPPSRL 171 (325)
T ss_pred EcCChhhccchhhhcceeeecCCchHH
Confidence 888543211111122236677663333
No 220
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.49 E-value=0.01 Score=64.33 Aligned_cols=41 Identities=32% Similarity=0.498 Sum_probs=34.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREK 91 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~ 91 (1170)
-+.++|.|.+|+||||||+.+++.++.+|+..+++.-+.+.
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer 109 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGER 109 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC
Confidence 36789999999999999999999998888877777655443
No 221
>PRK04132 replication factor C small subunit; Provisional
Probab=96.48 E-value=0.026 Score=70.80 Aligned_cols=157 Identities=14% Similarity=0.128 Sum_probs=92.1
Q ss_pred EEe--CCCccHHHHHHHHHhhhc-cccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhC
Q 045458 56 IWG--MGGLGKTTLARVVYDSMS-YEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLR 132 (1170)
Q Consensus 56 I~G--~gGiGKTtLA~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~ 132 (1170)
+.| +.|+||||+|.++++++- ..++....--+. ++..+ .+..++++......... -.
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNA---Sd~rg--id~IR~iIk~~a~~~~~---------------~~ 628 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELNA---SDERG--INVIREKVKEFARTKPI---------------GG 628 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeC---CCccc--HHHHHHHHHHHHhcCCc---------------CC
Confidence 347 788999999999998762 222222222221 11111 22333333332211000 01
Q ss_pred CCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCCchhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCC
Q 045458 133 QKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRDKQLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQP 210 (1170)
Q Consensus 133 ~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 210 (1170)
.+.-++|||+++.. ++..++..........+++|++|.+..-....-......+++.+++.++..+.+.+.+-....
T Consensus 629 ~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi- 707 (846)
T PRK04132 629 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL- 707 (846)
T ss_pred CCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC-
Confidence 24569999999865 456666666655567788888877654322211233358999999999998888776633221
Q ss_pred ChhhHHHHHHHHHHhCCCchHHHH
Q 045458 211 VGEYVELSERVLEYAGGLPLALKV 234 (1170)
Q Consensus 211 ~~~~~~~~~~i~~~~~GlPLal~~ 234 (1170)
....+....|++.++|.+-....
T Consensus 708 -~i~~e~L~~Ia~~s~GDlR~AIn 730 (846)
T PRK04132 708 -ELTEEGLQAILYIAEGDMRRAIN 730 (846)
T ss_pred -CCCHHHHHHHHHHcCCCHHHHHH
Confidence 12245678899999998754433
No 222
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.48 E-value=0.075 Score=56.12 Aligned_cols=214 Identities=15% Similarity=0.242 Sum_probs=120.9
Q ss_pred CCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhcc------ccCceeEEEecch------h
Q 045458 24 PETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSY------EFDGSSFLADVRE------K 91 (1170)
Q Consensus 24 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~~~~~~~~------~ 91 (1170)
|...+.+.++++...++.++... ++.+-..++|+.|.||-|.+..+.+++-+ +.+...|...... .
T Consensus 9 pksl~~l~~~~e~~~~Lksl~~~--~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistv 86 (351)
T KOG2035|consen 9 PKSLDELIYHEELANLLKSLSST--GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTV 86 (351)
T ss_pred cchhhhcccHHHHHHHHHHhccc--CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEe
Confidence 33445678888888888887763 56677889999999999998888775321 1222333321111 0
Q ss_pred h---------ccCCc-HHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeE-EEEEeCCCCH--HHHHHhhcCcCC
Q 045458 92 S---------EKEGS-VISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKV-LLIIDDVADV--EQLQSLAGKRDW 158 (1170)
Q Consensus 92 ~---------~~~~~-~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~-LlVLDdv~~~--~~l~~l~~~~~~ 158 (1170)
+ +..|. -+.+.++++.++......+ .. ..+.+ ++|+-.+|.. +.-.++......
T Consensus 87 sS~yHlEitPSDaG~~DRvViQellKevAQt~qie------------~~-~qr~fKvvvi~ead~LT~dAQ~aLRRTMEk 153 (351)
T KOG2035|consen 87 SSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIE------------TQ-GQRPFKVVVINEADELTRDAQHALRRTMEK 153 (351)
T ss_pred cccceEEeChhhcCcccHHHHHHHHHHHHhhcchh------------hc-cccceEEEEEechHhhhHHHHHHHHHHHHH
Confidence 0 01111 1334444544443211110 00 12333 5666666543 334445555555
Q ss_pred CCCCcEEEEEeCCchhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCch-HHHHHHH
Q 045458 159 FGPGSRILITTRDKQLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPL-ALKVLGS 237 (1170)
Q Consensus 159 ~~~gsrIIiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~l~~ 237 (1170)
....+|+|+...+..-.-..--.....+++++.+++|....++.-+-+..-. ...+++.+|+++++|+-- |+-++ .
T Consensus 154 Ys~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~--lp~~~l~rIa~kS~~nLRrAllml-E 230 (351)
T KOG2035|consen 154 YSSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQ--LPKELLKRIAEKSNRNLRRALLML-E 230 (351)
T ss_pred HhcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhccc--CcHHHHHHHHHHhcccHHHHHHHH-H
Confidence 5678898886654321111001111268999999999999998877443322 336889999999999743 33222 2
Q ss_pred hhc--C---------CCHHHHHHHHHHhh
Q 045458 238 FLI--G---------RTADLWRSALERLK 255 (1170)
Q Consensus 238 ~L~--~---------~~~~~w~~~l~~l~ 255 (1170)
..+ + -...+|+-++++..
T Consensus 231 ~~~~~n~~~~a~~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 231 AVRVNNEPFTANSQVIPKPDWEIYIQEIA 259 (351)
T ss_pred HHHhccccccccCCCCCCccHHHHHHHHH
Confidence 221 1 13568998888754
No 223
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.48 E-value=0.035 Score=69.07 Aligned_cols=155 Identities=14% Similarity=0.169 Sum_probs=84.2
Q ss_pred CccccchhhHHHHHHHHcCC----------CCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCc
Q 045458 28 KELVGIESRLEKIRFLMGTG----------SSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGS 97 (1170)
Q Consensus 28 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 97 (1170)
.++.|.+...+++.+.+... ..-.+-|.|+|++|.|||++|+.++.+....| +.+. ...
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f---~~is-~~~------- 220 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSD------- 220 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCE---EEEe-hHH-------
Confidence 34667776666665544211 01134589999999999999999988765432 1111 100
Q ss_pred HHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH----------------HHHHhhcCcCCCC-
Q 045458 98 VISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVE----------------QLQSLAGKRDWFG- 160 (1170)
Q Consensus 98 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~----------------~l~~l~~~~~~~~- 160 (1170)
+... .. . .........+...-...+.+|++|++|... .+..+....+.+.
T Consensus 221 ---~~~~----~~-g-----~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~ 287 (644)
T PRK10733 221 ---FVEM----FV-G-----VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 287 (644)
T ss_pred ---hHHh----hh-c-----ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC
Confidence 0000 00 0 001111222333334577899999986541 1333333333222
Q ss_pred -CCcEEEEEeCCchhhhhhCC---CCccEEECCCCChHHHHHHHHHhhcC
Q 045458 161 -PGSRILITTRDKQLLVAHEV---DEEHILNLDVLNNDEALQLFSMKAFK 206 (1170)
Q Consensus 161 -~gsrIIiTTR~~~v~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~ 206 (1170)
.+.-||.||.........-. .-.+.+.++..+.++..+++..+.-+
T Consensus 288 ~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 288 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred CCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 34455667766554332211 11247889999999999999887643
No 224
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.47 E-value=0.083 Score=59.69 Aligned_cols=86 Identities=16% Similarity=0.212 Sum_probs=48.6
Q ss_pred EEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCCchhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChh
Q 045458 136 VLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRDKQLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGE 213 (1170)
Q Consensus 136 ~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~ 213 (1170)
-++|+|+++.. ..-..+...+....+++.+|++|.+..-...........+.+.+++.+++.+.+.... ..+.
T Consensus 115 kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~~~ 189 (325)
T PRK08699 115 RVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG-----VAEP 189 (325)
T ss_pred eEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC-----CCcH
Confidence 34456888654 2333333333222356778888877653222222233479999999999999886542 1111
Q ss_pred hHHHHHHHHHHhCCCchH
Q 045458 214 YVELSERVLEYAGGLPLA 231 (1170)
Q Consensus 214 ~~~~~~~i~~~~~GlPLa 231 (1170)
...+..++|-|+.
T Consensus 190 -----~~~l~~~~g~p~~ 202 (325)
T PRK08699 190 -----EERLAFHSGAPLF 202 (325)
T ss_pred -----HHHHHHhCCChhh
Confidence 1123568898954
No 225
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.45 E-value=0.088 Score=56.03 Aligned_cols=34 Identities=29% Similarity=0.386 Sum_probs=28.8
Q ss_pred EEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
.++|.|..|.||||++..+.......|+....+.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 5679999999999999999999999996555443
No 226
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.45 E-value=0.019 Score=59.34 Aligned_cols=53 Identities=23% Similarity=0.406 Sum_probs=39.8
Q ss_pred CccccchhhHHHHHHH---HcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCc
Q 045458 28 KELVGIESRLEKIRFL---MGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDG 81 (1170)
Q Consensus 28 ~~~vGr~~~~~~l~~~---L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~ 81 (1170)
..++|.|...+.|.+- +..+ -..--|.+||.-|.||+.|++++.+.+.++.-.
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEG-LPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcC-CcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 4589999888877542 2212 223457899999999999999999998877554
No 227
>PHA00729 NTP-binding motif containing protein
Probab=96.45 E-value=0.018 Score=60.41 Aligned_cols=27 Identities=33% Similarity=0.279 Sum_probs=23.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
+...|+|+|.+|+||||||.++.+++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 446789999999999999999998753
No 228
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.42 E-value=0.019 Score=59.59 Aligned_cols=130 Identities=22% Similarity=0.244 Sum_probs=59.6
Q ss_pred cchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhh--ccccCceeEEEecchhhccCCc-HHHH-------
Q 045458 32 GIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSM--SYEFDGSSFLADVREKSEKEGS-VISL------- 101 (1170)
Q Consensus 32 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~--~~~f~~~~~~~~~~~~~~~~~~-~~~l------- 101 (1170)
.+..+.+...++|. +..+|.+.|++|.|||.||.+.+-+. ..+|+..++....-+..+.-+. .-++
T Consensus 4 p~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~ 79 (205)
T PF02562_consen 4 PKNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPY 79 (205)
T ss_dssp --SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TT
T ss_pred CCCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHH
Confidence 34455555556555 33689999999999999999887542 3556666555433322111111 0111
Q ss_pred HHHHHHHHhhcCCCccccchhhHHHHH---------HhhCC---CeEEEEEeCCCC--HHHHHHhhcCcCCCCCCcEEEE
Q 045458 102 QKQLLSNLLKLGDISIWHVEDGINIIG---------SRLRQ---KKVLLIIDDVAD--VEQLQSLAGKRDWFGPGSRILI 167 (1170)
Q Consensus 102 ~~~ll~~l~~~~~~~~~~~~~~~~~i~---------~~L~~---k~~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIIi 167 (1170)
..-+...+... . ........+. ..+++ ....||+|++.+ ..++..+... .|.||+||+
T Consensus 80 ~~p~~d~l~~~--~---~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~ 151 (205)
T PF02562_consen 80 LRPIYDALEEL--F---GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIII 151 (205)
T ss_dssp THHHHHHHTTT--S----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEE
T ss_pred HHHHHHHHHHH--h---ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEE
Confidence 11111111100 0 0111111111 23344 356999999954 4677777554 479999999
Q ss_pred EeCCch
Q 045458 168 TTRDKQ 173 (1170)
Q Consensus 168 TTR~~~ 173 (1170)
+--..+
T Consensus 152 ~GD~~Q 157 (205)
T PF02562_consen 152 TGDPSQ 157 (205)
T ss_dssp EE----
T ss_pred ecCcee
Confidence 876554
No 229
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.39 E-value=0.002 Score=63.45 Aligned_cols=22 Identities=41% Similarity=0.468 Sum_probs=20.6
Q ss_pred EEEEeCCCccHHHHHHHHHhhh
Q 045458 54 IGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 54 i~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
|.|+|.+|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999877
No 230
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.089 Score=64.22 Aligned_cols=182 Identities=16% Similarity=0.243 Sum_probs=108.1
Q ss_pred cCccccchhhHHHHHHHH---cC-------CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCC
Q 045458 27 IKELVGIESRLEKIRFLM---GT-------GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEG 96 (1170)
Q Consensus 27 ~~~~vGr~~~~~~l~~~L---~~-------~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 96 (1170)
-.++.|.|+..++|.+.. .. +..-++=|.++|++|.|||-||++++-+.. +-|+.....
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~svSGS------ 378 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSVSGS------ 378 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-----CceeeechH------
Confidence 467899988777776654 22 223357789999999999999999987643 334431110
Q ss_pred cHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH-----------------HHHHHhhcCcCCC
Q 045458 97 SVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV-----------------EQLQSLAGKRDWF 159 (1170)
Q Consensus 97 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~-----------------~~l~~l~~~~~~~ 159 (1170)
+........ ......+.+...=.+.+..+.+|++|.. ..+.++....+.+
T Consensus 379 -------EFvE~~~g~------~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf 445 (774)
T KOG0731|consen 379 -------EFVEMFVGV------GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGF 445 (774)
T ss_pred -------HHHHHhccc------chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCC
Confidence 011111100 0011112222223456788888887432 1266777666655
Q ss_pred CCCc--EEEEEeCCchhhhhhCCC---CccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHH
Q 045458 160 GPGS--RILITTRDKQLLVAHEVD---EEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKV 234 (1170)
Q Consensus 160 ~~gs--rIIiTTR~~~v~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 234 (1170)
..+. -++-+|+..+++...-.. -++.+.++.-+..+..+.|.-|+-+.... .+..++++ ++..+-|.+=|-.+
T Consensus 446 ~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~gadl~ 523 (774)
T KOG0731|consen 446 ETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGADLA 523 (774)
T ss_pred cCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHHHHH
Confidence 5443 344455555544332211 12378899999999999999988544433 34456666 99999998866543
No 231
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.34 E-value=0.085 Score=62.85 Aligned_cols=201 Identities=14% Similarity=0.133 Sum_probs=118.0
Q ss_pred CccCccccchhhHHHHHHHHcCC---CCCeEEEEEEeCCCccHHHHHHHHHhhhc-----c---ccCceeEEEecchhhc
Q 045458 25 ETIKELVGIESRLEKIRFLMGTG---SSDVRMIGIWGMGGLGKTTLARVVYDSMS-----Y---EFDGSSFLADVREKSE 93 (1170)
Q Consensus 25 ~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~~~~~~~-----~---~f~~~~~~~~~~~~~~ 93 (1170)
.+++.+-+||.+..+|...+... .+....+-|.|.+|.|||+.+..|.+.+. . .|+ .+.+...+-.
T Consensus 393 ~vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~-- 469 (767)
T KOG1514|consen 393 AVPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLA-- 469 (767)
T ss_pred hccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeec--
Confidence 37788999999999998876532 12345889999999999999999998543 1 243 2333322211
Q ss_pred cCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhC-----CCeEEEEEeCCCCHHH-----HHHhhcCcCCC-CCC
Q 045458 94 KEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLR-----QKKVLLIIDDVADVEQ-----LQSLAGKRDWF-GPG 162 (1170)
Q Consensus 94 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~-----~k~~LlVLDdv~~~~~-----l~~l~~~~~~~-~~g 162 (1170)
...++...|...+.... ..+..+.+.+..++. .+..+|++|++|.... +..+ ++|- .++
T Consensus 470 ---~~~~~Y~~I~~~lsg~~----~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~---fdWpt~~~ 539 (767)
T KOG1514|consen 470 ---SPREIYEKIWEALSGER----VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNI---FDWPTLKN 539 (767)
T ss_pred ---CHHHHHHHHHHhcccCc----ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHH---hcCCcCCC
Confidence 13666677777665322 234555666666654 4678999999865432 3333 3333 477
Q ss_pred cEEEEEeCCch--hhhhhC------CCCccEEECCCCChHHHHHHHHHhhcCCCC-CChhhHHHHHHHHHHhCCCchHHH
Q 045458 163 SRILITTRDKQ--LLVAHE------VDEEHILNLDVLNNDEALQLFSMKAFKTHQ-PVGEYVELSERVLEYAGGLPLALK 233 (1170)
Q Consensus 163 srIIiTTR~~~--v~~~~~------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~GlPLal~ 233 (1170)
|+++|.+=... +....- --....+...+.++++-.+....+..+... .....+-+|+.|+.-.|-.-.|+.
T Consensus 540 sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRrald 619 (767)
T KOG1514|consen 540 SKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALD 619 (767)
T ss_pred CceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHH
Confidence 87766553211 111100 011136788889999888888776643321 122333345555555555555555
Q ss_pred HHHHh
Q 045458 234 VLGSF 238 (1170)
Q Consensus 234 ~l~~~ 238 (1170)
+.-++
T Consensus 620 ic~RA 624 (767)
T KOG1514|consen 620 ICRRA 624 (767)
T ss_pred HHHHH
Confidence 54443
No 232
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.31 E-value=0.11 Score=65.98 Aligned_cols=50 Identities=18% Similarity=0.304 Sum_probs=38.4
Q ss_pred cCccccchhhHHHHHHHHcCC------CC-CeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 27 IKELVGIESRLEKIRFLMGTG------SS-DVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 27 ~~~~vGr~~~~~~l~~~L~~~------~~-~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
...++|.+..++.+...+... .+ ...++.++|+.|+|||+||+.+++.+.
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 346889998888887776531 11 234688999999999999999998763
No 233
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.30 E-value=0.044 Score=64.11 Aligned_cols=29 Identities=28% Similarity=0.289 Sum_probs=25.2
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
...+|.++|.+|+||||.|..++..++.+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46899999999999999999999877654
No 234
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.29 E-value=0.013 Score=58.25 Aligned_cols=116 Identities=17% Similarity=0.168 Sum_probs=59.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHH--hhcCCCc---ccc-------
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNL--LKLGDIS---IWH------- 119 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l--~~~~~~~---~~~------- 119 (1170)
.+|-|++-.|.||||+|...+-+...+--.+.++.-+... ...+- ....+.+ ..+ ....... ..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~-~~~gE-~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG-WKYGE-LKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC-CccCH-HHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4788888889999999999887655443334443322221 11121 2222222 000 0000000 001
Q ss_pred chhhHHHHHHhhCC-CeEEEEEeCCCCH--------HHHHHhhcCcCCCCCCcEEEEEeCCch
Q 045458 120 VEDGINIIGSRLRQ-KKVLLIIDDVADV--------EQLQSLAGKRDWFGPGSRILITTRDKQ 173 (1170)
Q Consensus 120 ~~~~~~~i~~~L~~-k~~LlVLDdv~~~--------~~l~~l~~~~~~~~~gsrIIiTTR~~~ 173 (1170)
..++.+..++.++. +-=|||||++-.. +++-.+... ..++.-||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~---rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKA---KPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHc---CCCCCEEEEECCCCC
Confidence 11223334444444 4559999998432 333333333 346789999999965
No 235
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.28 E-value=0.034 Score=62.87 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=24.8
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
+.++|+|+|.+|+||||++..++..+..+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~ 268 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK 268 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 45899999999999999999998766543
No 236
>PRK14974 cell division protein FtsY; Provisional
Probab=96.26 E-value=0.055 Score=61.05 Aligned_cols=29 Identities=24% Similarity=0.212 Sum_probs=24.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
...+|+++|++|+||||++..++..+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 36899999999999999998888766543
No 237
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.25 E-value=0.0096 Score=60.15 Aligned_cols=34 Identities=26% Similarity=0.315 Sum_probs=26.4
Q ss_pred EEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
++.|+|.+|+||||+|..+......+-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999987765444455554
No 238
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.24 E-value=0.0037 Score=59.74 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=21.4
Q ss_pred EEEEEeCCCccHHHHHHHHHhhh
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
+|+|.|++|+||||+|+.+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999875
No 239
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.24 E-value=0.027 Score=72.30 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=38.4
Q ss_pred cCccccchhhHHHHHHHHcCCC------C-CeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 27 IKELVGIESRLEKIRFLMGTGS------S-DVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 27 ~~~~vGr~~~~~~l~~~L~~~~------~-~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
...++|.+..++.+...+.... + ...++.++|+.|+|||++|+.+++.+.
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~ 623 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF 623 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 3468899999988887765321 1 124788999999999999999998654
No 240
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.23 E-value=0.0043 Score=59.98 Aligned_cols=39 Identities=31% Similarity=0.360 Sum_probs=29.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccc-cCce-eEEEecch
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYE-FDGS-SFLADVRE 90 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~-f~~~-~~~~~~~~ 90 (1170)
--|+|+||+|+||||+++.+.+.++.. |..+ ++...+|+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~ 46 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVRE 46 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeec
Confidence 468999999999999999999987766 5443 33444443
No 241
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.20 E-value=0.019 Score=62.95 Aligned_cols=101 Identities=19% Similarity=0.139 Sum_probs=59.8
Q ss_pred hHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCC
Q 045458 36 RLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDI 115 (1170)
Q Consensus 36 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~ 115 (1170)
.++.+.+++... ..+|.|.|..|.||||+++++.+.+...-...+.+.+..+..-. +. .++. .
T Consensus 68 ~~~~l~~~~~~~---~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~-~~---------~q~~----v 130 (264)
T cd01129 68 NLEIFRKLLEKP---HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP-GI---------NQVQ----V 130 (264)
T ss_pred HHHHHHHHHhcC---CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC-Cc---------eEEE----e
Confidence 344555555432 35899999999999999999987764322223344333222111 10 0000 0
Q ss_pred ccccchhhHHHHHHhhCCCeEEEEEeCCCCHHHHHHhh
Q 045458 116 SIWHVEDGINIIGSRLRQKKVLLIIDDVADVEQLQSLA 153 (1170)
Q Consensus 116 ~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~~l~~l~ 153 (1170)
.........+.++..|+..+=.|+++++.+.+....+.
T Consensus 131 ~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~ 168 (264)
T cd01129 131 NEKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAV 168 (264)
T ss_pred CCcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHH
Confidence 00011234567788889899999999999988655443
No 242
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.18 E-value=0.01 Score=61.08 Aligned_cols=37 Identities=30% Similarity=0.583 Sum_probs=31.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
...+|++.|+.|.||||+|+.+++.+...+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3468999999999999999999999887777666663
No 243
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.18 E-value=0.065 Score=67.20 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=38.6
Q ss_pred CccccchhhHHHHHHHHcCC-------CCCeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 28 KELVGIESRLEKIRFLMGTG-------SSDVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 28 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
..++|-+..++.|...+... ......+.++|++|+|||++|+.++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999888877531 11245788999999999999999988763
No 244
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.18 E-value=0.037 Score=70.75 Aligned_cols=50 Identities=22% Similarity=0.302 Sum_probs=38.9
Q ss_pred cCccccchhhHHHHHHHHcCC-------CCCeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 27 IKELVGIESRLEKIRFLMGTG-------SSDVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 27 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
...++|.+..++.+.+.+... .....++.++|+.|+|||.+|+++++.+-
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~ 621 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY 621 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999888776321 12245789999999999999999988764
No 245
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.16 E-value=0.01 Score=59.65 Aligned_cols=81 Identities=25% Similarity=0.337 Sum_probs=54.8
Q ss_pred CCCCcEEEcCCCCCCCcCCCCCCCCCccEEEeeccCCcccccccccC-CCCccEEEeeCCCC--CCccCccccCCcccEE
Q 045458 468 LNMLKVMKVSYSQSLIKIPDFTGVPNLEKLYLEGCTRLREIHPSLLL-HSKLVILNLTGCTS--LATLPGKIFMKSVKKL 544 (1170)
Q Consensus 468 l~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~-l~~L~~L~L~~c~~--l~~lp~~~~l~~L~~L 544 (1170)
+.+...+||++|. +..+++|..+++|.+|.+.+| .+..+.+.+.. +++|+.|.+.+|+. +.++.....++.|++|
T Consensus 41 ~d~~d~iDLtdNd-l~~l~~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDND-LRKLDNLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccc-hhhcccCCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 4577889999987 677888999999999999886 45555555554 56788888877432 2223333335566666
Q ss_pred EecCCC
Q 045458 545 VLSGCS 550 (1170)
Q Consensus 545 ~L~~~~ 550 (1170)
.+-+|+
T Consensus 119 tll~Np 124 (233)
T KOG1644|consen 119 TLLGNP 124 (233)
T ss_pred eecCCc
Confidence 665554
No 246
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.16 E-value=0.00082 Score=81.64 Aligned_cols=81 Identities=23% Similarity=0.339 Sum_probs=38.3
Q ss_pred CCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCcccchhhhcCCCCCEeeccCccCCCcCCC--C---Ccc
Q 045458 771 LSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVSLPASISRLSKLECLNLNGCKKLQSLPP--L---PAR 845 (1170)
Q Consensus 771 l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~--l---p~s 845 (1170)
...++.|+.+.|..|...+......+.+++.|. . .+.........|+.|+++.|...+.--- . ...
T Consensus 358 ~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~--------~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~ 428 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-E--------SLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSN 428 (482)
T ss_pred HhcCCCcchhhhhhhhccCcchHHHhcCCcccc-h--------HHHHHhccCCccceEecccCccccccchHHHhhhhhc
Confidence 456667777777777643222122333444431 1 1111122223377777777765543211 1 233
Q ss_pred cceeeccCCcCCccc
Q 045458 846 MRIASVNGCASLETL 860 (1170)
Q Consensus 846 L~~L~i~~C~~L~~l 860 (1170)
++.+++.+|+.....
T Consensus 429 ~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 429 LKDLDLSGCRVITLK 443 (482)
T ss_pred cccCCccCcccccch
Confidence 455566666555443
No 247
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.16 E-value=0.0012 Score=68.66 Aligned_cols=17 Identities=41% Similarity=0.436 Sum_probs=8.9
Q ss_pred CCCCCCCEEECcCCCCc
Q 045458 797 GNLRSLKVLCLSNNSFV 813 (1170)
Q Consensus 797 ~~l~sL~~L~Ls~n~l~ 813 (1170)
..+.+|+.|+|.+|-|+
T Consensus 211 ~y~~~LevLDlqDNtft 227 (388)
T COG5238 211 FYSHSLEVLDLQDNTFT 227 (388)
T ss_pred HHhCcceeeeccccchh
Confidence 34455555555555544
No 248
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.14 E-value=0.0045 Score=69.40 Aligned_cols=48 Identities=17% Similarity=0.356 Sum_probs=40.4
Q ss_pred ccccchhhHHHHHHHHcCC----CCCeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 29 ELVGIESRLEKIRFLMGTG----SSDVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 29 ~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
+++|+++.++++.+++... +...++++|+|++|.||||||+++.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 7999999999998877542 23468899999999999999999998654
No 249
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.14 E-value=0.026 Score=60.71 Aligned_cols=49 Identities=22% Similarity=0.269 Sum_probs=35.7
Q ss_pred HHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhcccc------CceeEEE
Q 045458 38 EKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEF------DGSSFLA 86 (1170)
Q Consensus 38 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~ 86 (1170)
..|.++|..+-..-.++.|+|.+|.|||++|..++....... ..++|+.
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 455566654445568999999999999999999987654443 4456665
No 250
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.13 E-value=0.022 Score=60.93 Aligned_cols=50 Identities=18% Similarity=0.253 Sum_probs=37.5
Q ss_pred HHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 37 LEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 37 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
...|..+|..+-..-.++.|+|.+|+||||+|.+++.....+-..++|+.
T Consensus 5 i~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 5 CKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 44566777644455689999999999999999999987655544566664
No 251
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.12 E-value=0.018 Score=58.34 Aligned_cols=46 Identities=26% Similarity=0.325 Sum_probs=33.1
Q ss_pred cccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 30 LVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 30 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
+||.+..++++.+.+..-.....-|.|+|..|.||+.+|+.+++.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 4788888888877665433333556799999999999999999843
No 252
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.11 E-value=0.0077 Score=63.97 Aligned_cols=45 Identities=20% Similarity=0.310 Sum_probs=34.8
Q ss_pred HHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 42 FLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 42 ~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
++|..+-..-+++.|+|.+|+|||++|.+++.........++|+.
T Consensus 3 ~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 3 ELLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred hhhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 345444345689999999999999999999887655556677776
No 253
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.09 E-value=0.00059 Score=82.88 Aligned_cols=34 Identities=29% Similarity=0.311 Sum_probs=18.5
Q ss_pred CCCCcEEEcCCCCCCCcC---CCCCCCCCccEEEeec
Q 045458 468 LNMLKVMKVSYSQSLIKI---PDFTGVPNLEKLYLEG 501 (1170)
Q Consensus 468 l~~L~~L~Ls~~~~l~~~---~~~~~l~~L~~L~L~~ 501 (1170)
++.|+.+.+..+...... +....+++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 556666666655544431 2244566666666655
No 254
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.04 E-value=0.021 Score=64.38 Aligned_cols=92 Identities=14% Similarity=0.126 Sum_probs=52.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccccCce-eEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccc----cchhhHHH
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYEFDGS-SFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIW----HVEDGINI 126 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~----~~~~~~~~ 126 (1170)
+.++|+|.+|+|||||++.+++.+..+.+.+ +++.-+ .++...+.++.+.+...+......... ........
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lI---gER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~ 210 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLI---DERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLE 210 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEe---cCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHH
Confidence 5668999999999999999999876654322 233323 233334466666665544321100100 01111112
Q ss_pred HHHhh--CCCeEEEEEeCCCCH
Q 045458 127 IGSRL--RQKKVLLIIDDVADV 146 (1170)
Q Consensus 127 i~~~L--~~k~~LlVLDdv~~~ 146 (1170)
+.+.+ ++++++||+|++...
T Consensus 211 ~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 211 RAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHcCCCEEEEEeCcHHH
Confidence 22222 479999999999654
No 255
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.04 E-value=0.046 Score=70.44 Aligned_cols=52 Identities=19% Similarity=0.293 Sum_probs=40.5
Q ss_pred cCccccchhhHHHHHHHHcCCC------C-CeEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 27 IKELVGIESRLEKIRFLMGTGS------S-DVRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 27 ~~~~vGr~~~~~~l~~~L~~~~------~-~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
...++|.+..++.+...+.... + ...++.++|+.|+|||++|+.++......
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~ 622 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 4569999999999988775421 1 13578899999999999999999876443
No 256
>PRK07667 uridine kinase; Provisional
Probab=96.04 E-value=0.012 Score=61.53 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=33.8
Q ss_pred HHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 37 LEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 37 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
++.|...+....++..+|+|.|.+|.||||+|+.+.+.+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 455666666655667899999999999999999999877543
No 257
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.01 E-value=0.033 Score=62.11 Aligned_cols=79 Identities=20% Similarity=0.265 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhcc----cCCC--ccCccccchhhHHHHHHHHc-CCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccC
Q 045458 8 FIEEIVNVISSKIH----TEPE--TIKELVGIESRLEKIRFLMG-TGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFD 80 (1170)
Q Consensus 8 ~i~~i~~~i~~~l~----~~~~--~~~~~vGr~~~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~ 80 (1170)
-++..+.+|-++.. .... .....-....-...|..+|. .+-+.-+++.|+|.+|+||||||.+++......-.
T Consensus 5 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~ 84 (321)
T TIGR02012 5 ALEAALAQIEKQFGKGSIMRLGEKSVMDVETISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGG 84 (321)
T ss_pred HHHHHHHHHHHHcCcceeEECcccccccCceecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 35566666666654 1111 11122223344566777776 44456689999999999999999998876655545
Q ss_pred ceeEEE
Q 045458 81 GSSFLA 86 (1170)
Q Consensus 81 ~~~~~~ 86 (1170)
.++|+.
T Consensus 85 ~v~yId 90 (321)
T TIGR02012 85 TAAFID 90 (321)
T ss_pred cEEEEc
Confidence 566664
No 258
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.01 E-value=0.033 Score=62.13 Aligned_cols=79 Identities=22% Similarity=0.247 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhcc-----cCCC-ccCccccchhhHHHHHHHHc-CCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccC
Q 045458 8 FIEEIVNVISSKIH-----TEPE-TIKELVGIESRLEKIRFLMG-TGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFD 80 (1170)
Q Consensus 8 ~i~~i~~~i~~~l~-----~~~~-~~~~~vGr~~~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~ 80 (1170)
-++.-+.+|.++.. .... ......-...-...|..+|. .+-+.-+++-|+|++|+||||||.+++......-.
T Consensus 5 ~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~ 84 (325)
T cd00983 5 ALELALKQIEKKFGKGSIMKLGDDAVQDVEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGG 84 (325)
T ss_pred HHHHHHHHHHHHhCCcceEECccccccCCceecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 45666666666654 1111 11222233444556777777 44455689999999999999999998876655555
Q ss_pred ceeEEE
Q 045458 81 GSSFLA 86 (1170)
Q Consensus 81 ~~~~~~ 86 (1170)
.++|+.
T Consensus 85 ~~vyId 90 (325)
T cd00983 85 TVAFID 90 (325)
T ss_pred CEEEEC
Confidence 666765
No 259
>PRK08118 topology modulation protein; Reviewed
Probab=96.00 E-value=0.0064 Score=61.73 Aligned_cols=25 Identities=40% Similarity=0.611 Sum_probs=22.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
+.|.|.|++|+||||||+.+++...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999998754
No 260
>PRK06696 uridine kinase; Validated
Probab=95.99 E-value=0.011 Score=63.37 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=35.7
Q ss_pred chhhHHHHHHHHcC-CCCCeEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 33 IESRLEKIRFLMGT-GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 33 r~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
|.+.+++|.+.+.. ..+...+|+|.|.+|.||||+|+.+.+.+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 55666777666543 33567899999999999999999999877543
No 261
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.97 E-value=0.1 Score=56.86 Aligned_cols=177 Identities=19% Similarity=0.196 Sum_probs=97.8
Q ss_pred ccCccccchhhHHHHHHHHcCC--CCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccC-CcHHHHH
Q 045458 26 TIKELVGIESRLEKIRFLMGTG--SSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKE-GSVISLQ 102 (1170)
Q Consensus 26 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~~~~l~ 102 (1170)
+...++|-.++..++.+++... .++..-|.|.|+.|.|||+|......+ .+.+.....+.......... -.+..+.
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 4457999999999998887531 123345778999999999998877766 33444444443333322211 1123344
Q ss_pred HHHHHHHhhcCCCccccchhhHHHHHHhhCC------CeEEEEEeCCCCH----HH--HHHhhc-CcCCCCCCcEEEEEe
Q 045458 103 KQLLSNLLKLGDISIWHVEDGINIIGSRLRQ------KKVLLIIDDVADV----EQ--LQSLAG-KRDWFGPGSRILITT 169 (1170)
Q Consensus 103 ~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~------k~~LlVLDdv~~~----~~--l~~l~~-~~~~~~~gsrIIiTT 169 (1170)
.|+..++.. ......+..+....+...|+. -++.+|+|.+|-- .| +..+.. ......|-+-|-+||
T Consensus 101 rql~~e~~~-~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 101 RQLALELNR-IVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHhh-hheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 444444332 122233444555555555542 4799999988643 22 222221 111235677788899
Q ss_pred CCchhhh-----hhCCCCccEEECCCCChHHHHHHHHHhh
Q 045458 170 RDKQLLV-----AHEVDEEHILNLDVLNNDEALQLFSMKA 204 (1170)
Q Consensus 170 R~~~v~~-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 204 (1170)
|-.-... ........++-++.++-++-.++++.-.
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 8753211 1112222356666666666666665443
No 262
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.94 E-value=0.046 Score=57.29 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=63.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE-ecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA-DVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSR 130 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~ 130 (1170)
.+|.|.|..|.||||+++.+...+.......++.. +-.+.. .... . .+..+ .... .+.....+.++..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~-~~~~-~----~~i~q----~~vg-~~~~~~~~~i~~a 70 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFV-HESK-R----SLINQ----REVG-LDTLSFENALKAA 70 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccc-ccCc-c----ceeee----cccC-CCccCHHHHHHHH
Confidence 47899999999999999998887654444343332 211110 0000 0 00000 0000 1123345667888
Q ss_pred hCCCeEEEEEeCCCCHHHHHHhhcCcCCCCCCcEEEEEeCCchh
Q 045458 131 LRQKKVLLIIDDVADVEQLQSLAGKRDWFGPGSRILITTRDKQL 174 (1170)
Q Consensus 131 L~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v 174 (1170)
++..+=.+++|.+.+.+.++...... ..|-.++.|+.....
T Consensus 71 Lr~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 71 LRQDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSA 111 (198)
T ss_pred hcCCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcH
Confidence 88888899999998887765544332 245567777766553
No 263
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.93 E-value=0.092 Score=60.44 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=23.6
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
..++|+++|..|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999987654
No 264
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.93 E-value=0.064 Score=59.00 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=25.4
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 49 SDVRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 49 ~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
.+.++|+++|++|+||||.+..++..+...
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~ 99 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ 99 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 346899999999999999999998776544
No 265
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.078 Score=64.40 Aligned_cols=154 Identities=17% Similarity=0.209 Sum_probs=87.0
Q ss_pred CccccchhhHHHHHHHHcC-----------CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhc-cC
Q 045458 28 KELVGIESRLEKIRFLMGT-----------GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSE-KE 95 (1170)
Q Consensus 28 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~-~~ 95 (1170)
....|.+...+.+.+.+.. +-...+.+.++|++|.|||.||++++......|-... ..+... .-
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~----~~~l~sk~v 317 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVK----GSELLSKWV 317 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEee----CHHHhcccc
Confidence 4566677666666554322 1234568999999999999999999996554432111 001100 01
Q ss_pred CcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH-------------HHHHhhcCcCCCC--
Q 045458 96 GSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVE-------------QLQSLAGKRDWFG-- 160 (1170)
Q Consensus 96 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~-------------~l~~l~~~~~~~~-- 160 (1170)
+... ....+.+....+..+..|.+|.++... ....++...+...
T Consensus 318 Gese---------------------k~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~ 376 (494)
T COG0464 318 GESE---------------------KNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKA 376 (494)
T ss_pred chHH---------------------HHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCcc
Confidence 1101 111223333445788999999985432 2233333332222
Q ss_pred CCcEEEEEeCCchhhhhhC-C--CCccEEECCCCChHHHHHHHHHhhcC
Q 045458 161 PGSRILITTRDKQLLVAHE-V--DEEHILNLDVLNNDEALQLFSMKAFK 206 (1170)
Q Consensus 161 ~gsrIIiTTR~~~v~~~~~-~--~~~~~~~l~~L~~~ea~~Lf~~~a~~ 206 (1170)
.+..||-||.......... . .-...+.++.-+.++..+.|..+.-.
T Consensus 377 ~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 377 EGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred CceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcc
Confidence 3344566665544333211 1 11238999999999999999988853
No 266
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.91 E-value=0.0064 Score=59.71 Aligned_cols=46 Identities=24% Similarity=0.270 Sum_probs=32.5
Q ss_pred ccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 31 VGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 31 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
||....++++.+.+..-.....-|.|+|..|.||+++|+.++..-.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 5777777777766654333445678999999999999999987543
No 267
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.90 E-value=0.12 Score=59.26 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=22.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
..+++++|.+|+||||+|..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 268
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.88 E-value=0.081 Score=68.03 Aligned_cols=50 Identities=16% Similarity=0.256 Sum_probs=38.2
Q ss_pred cCccccchhhHHHHHHHHcCC------CC-CeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 27 IKELVGIESRLEKIRFLMGTG------SS-DVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 27 ~~~~vGr~~~~~~l~~~L~~~------~~-~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
...++|-+..++.+...+... .+ ....+.++|+.|+|||+||+.+++.+-
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~ 564 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF 564 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 356899999999888776421 11 234567899999999999999998753
No 269
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.87 E-value=0.0057 Score=64.18 Aligned_cols=87 Identities=26% Similarity=0.282 Sum_probs=56.4
Q ss_pred CCCCCCcCEEeccCC--CCCCCCCcCccCCCCCCCEEECcCCCCcccc--hhhhcCCCCCEeeccCccCCCcCC------
Q 045458 771 LSGLYSLTKLDLSDC--DLGEGFIPNDIGNLRSLKVLCLSNNSFVSLP--ASISRLSKLECLNLNGCKKLQSLP------ 840 (1170)
Q Consensus 771 l~~l~~L~~L~Ls~c--~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~c~~L~~lp------ 840 (1170)
+..+++|+.|.+++| ... ..++.....+++|++|++++|++..+. ..+..+.+|..|++.+|+-.+---
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~-~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf 139 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVS-GGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVF 139 (260)
T ss_pred CCCcchhhhhcccCCccccc-ccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHH
Confidence 445677888888888 443 223334455689999999999876422 145677888888998887655211
Q ss_pred CCCcccceeeccCCcCCc
Q 045458 841 PLPARMRIASVNGCASLE 858 (1170)
Q Consensus 841 ~lp~sL~~L~i~~C~~L~ 858 (1170)
.+.++|++|+-.++..=+
T Consensus 140 ~ll~~L~~LD~~dv~~~E 157 (260)
T KOG2739|consen 140 LLLPSLKYLDGCDVDGEE 157 (260)
T ss_pred HHhhhhccccccccCCcc
Confidence 145567777666655444
No 270
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.076 Score=61.98 Aligned_cols=128 Identities=17% Similarity=0.297 Sum_probs=78.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhH-HHHHH
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGI-NIIGS 129 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~-~~i~~ 129 (1170)
..=|.+||++|+|||-||++|+++....| ++ ++. -. ++....+ ..+..+ ..+++
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NF-----is-VKG--------PE----LlNkYVG-------ESErAVR~vFqR 599 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANF-----IS-VKG--------PE----LLNKYVG-------ESERAVRQVFQR 599 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCce-----Ee-ecC--------HH----HHHHHhh-------hHHHHHHHHHHH
Confidence 35578999999999999999999876553 33 211 11 2222211 112222 23333
Q ss_pred hhCCCeEEEEEeCCCCHH-------------HHHHhhcCcCCC--CCCcEEEEEeCCchhhhhh-----CCCCccEEECC
Q 045458 130 RLRQKKVLLIIDDVADVE-------------QLQSLAGKRDWF--GPGSRILITTRDKQLLVAH-----EVDEEHILNLD 189 (1170)
Q Consensus 130 ~L~~k~~LlVLDdv~~~~-------------~l~~l~~~~~~~--~~gsrIIiTTR~~~v~~~~-----~~~~~~~~~l~ 189 (1170)
.-...+++|.+|.+|... -...|+..++-. ..|.-||-.|..+++.... ..+. .+-|+
T Consensus 600 AR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk--~LyV~ 677 (802)
T KOG0733|consen 600 ARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDK--LLYVG 677 (802)
T ss_pred hhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCc--eeeec
Confidence 334689999999986531 244455444422 3566777777655543322 2344 77888
Q ss_pred CCChHHHHHHHHHhhc
Q 045458 190 VLNNDEALQLFSMKAF 205 (1170)
Q Consensus 190 ~L~~~ea~~Lf~~~a~ 205 (1170)
.-+.+|-.+.++..+-
T Consensus 678 lPn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 678 LPNAEERVAILKTITK 693 (802)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 8889999999987774
No 271
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.1 Score=59.96 Aligned_cols=150 Identities=16% Similarity=0.199 Sum_probs=83.6
Q ss_pred CccccchhhHHHH---HHHHcCC-------CCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCc
Q 045458 28 KELVGIESRLEKI---RFLMGTG-------SSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGS 97 (1170)
Q Consensus 28 ~~~vGr~~~~~~l---~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 97 (1170)
++.-|.|+..++| .+.|.+. +.=++=|.++|++|.|||-||++++-+..- -|+.... ++.
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V-----PFF~~sG--SEF--- 373 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV-----PFFYASG--SEF--- 373 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC-----CeEeccc--cch---
Confidence 4456777655544 4555442 122567899999999999999999875432 2332111 111
Q ss_pred HHHHHHHHHHHHhhcCCCccccchhhHHHHH----HhhCCCeEEEEEeCCCCH-------------HHHHHhhcCcCCCC
Q 045458 98 VISLQKQLLSNLLKLGDISIWHVEDGINIIG----SRLRQKKVLLIIDDVADV-------------EQLQSLAGKRDWFG 160 (1170)
Q Consensus 98 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~----~~L~~k~~LlVLDdv~~~-------------~~l~~l~~~~~~~~ 160 (1170)
++++ +..+..+++ ..-+.-++.|.+|.+|.. ..+.+++...+-|.
T Consensus 374 -----dEm~-------------VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~ 435 (752)
T KOG0734|consen 374 -----DEMF-------------VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFK 435 (752)
T ss_pred -----hhhh-------------hcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcC
Confidence 0111 112222333 333467899999998643 12666776666665
Q ss_pred CCc--EEEEEeCCchhhhhhCC---CCccEEECCCCChHHHHHHHHHhhc
Q 045458 161 PGS--RILITTRDKQLLVAHEV---DEEHILNLDVLNNDEALQLFSMKAF 205 (1170)
Q Consensus 161 ~gs--rIIiTTR~~~v~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~ 205 (1170)
+.. -||-.|.-++.+...-. .-+..+.|+.-+..-..+.|.++.-
T Consensus 436 qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ 485 (752)
T KOG0734|consen 436 QNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLS 485 (752)
T ss_pred cCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHh
Confidence 443 33334444333322211 1123677777777777777777763
No 272
>PRK04296 thymidine kinase; Provisional
Probab=95.83 E-value=0.014 Score=60.74 Aligned_cols=112 Identities=18% Similarity=0.102 Sum_probs=60.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCC-CccccchhhHHHHHHh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGD-ISIWHVEDGINIIGSR 130 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~-~~~~~~~~~~~~i~~~ 130 (1170)
.++.|+|..|.||||+|..++.+...+...+.++... .....+. . .+.+++..... .......+....+++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~--~d~~~~~-~----~i~~~lg~~~~~~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPA--IDDRYGE-G----KVVSRIGLSREAIPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecc--ccccccC-C----cEecCCCCcccceEeCChHHHHHHHHh-
Confidence 5788999999999999999998875554333433210 0001111 1 11222210000 011122333444444
Q ss_pred hCCCeEEEEEeCCCC--HHHHHHhhcCcCCCCCCcEEEEEeCCch
Q 045458 131 LRQKKVLLIIDDVAD--VEQLQSLAGKRDWFGPGSRILITTRDKQ 173 (1170)
Q Consensus 131 L~~k~~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIIiTTR~~~ 173 (1170)
..++.-+||+|.+.- .+++..+..... ..|..||+|.++..
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 233556899999854 344444433322 46889999999854
No 273
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.83 E-value=0.018 Score=58.31 Aligned_cols=80 Identities=14% Similarity=0.135 Sum_probs=45.6
Q ss_pred EEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhC
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLR 132 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~ 132 (1170)
++.|.|.+|.|||++|.++... ......++.... ... ...++.+..... .. +..+...+....+.+.+.
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~-----~~d-~em~~rI~~H~~-~R-~~~w~t~E~~~~l~~~l~ 69 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---LGGPVTYIATAE-----AFD-DEMAERIARHRK-RR-PAHWRTIETPRDLVSALK 69 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccC-----cCC-HHHHHHHHHHHH-hC-CCCceEeecHHHHHHHHH
Confidence 3679999999999999999765 223455664221 112 344555444322 22 333444444444555553
Q ss_pred C--CeEEEEEeCC
Q 045458 133 Q--KKVLLIIDDV 143 (1170)
Q Consensus 133 ~--k~~LlVLDdv 143 (1170)
. +.-.+++|.+
T Consensus 70 ~~~~~~~VLIDcl 82 (169)
T cd00544 70 ELDPGDVVLIDCL 82 (169)
T ss_pred hcCCCCEEEEEcH
Confidence 2 2337999986
No 274
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.035 Score=68.18 Aligned_cols=155 Identities=14% Similarity=0.175 Sum_probs=85.1
Q ss_pred cCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccc-cC-----ceeEEEecchhhccCCcHHH
Q 045458 27 IKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE-FD-----GSSFLADVREKSEKEGSVIS 100 (1170)
Q Consensus 27 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~-f~-----~~~~~~~~~~~~~~~~~~~~ 100 (1170)
.+..+||+.+++++.+.|.....+-+ .++|.+|+|||++|.-++.++... -+ ..++-.++..
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~---------- 236 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGS---------- 236 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHH----------
Confidence 45699999999999999976543333 358999999999999999876432 11 1222221111
Q ss_pred HHHHHHHHHhhcCCCccccchhhHHHHHHhhC-CCeEEEEEeCCCCH-----------HHHHHhhcCcCCCCCCcEEEEE
Q 045458 101 LQKQLLSNLLKLGDISIWHVEDGINIIGSRLR-QKKVLLIIDDVADV-----------EQLQSLAGKRDWFGPGSRILIT 168 (1170)
Q Consensus 101 l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~-~k~~LlVLDdv~~~-----------~~l~~l~~~~~~~~~gsrIIiT 168 (1170)
+..+.. --++.++....+.+.++ ..++.|++|.+... +.-.-+.+.+. .|.--.|=.|
T Consensus 237 --------LvAGak-yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA-RGeL~~IGAT 306 (786)
T COG0542 237 --------LVAGAK-YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA-RGELRCIGAT 306 (786)
T ss_pred --------Hhcccc-ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh-cCCeEEEEec
Confidence 110111 11233344433333333 45899999987432 11122222221 1222234445
Q ss_pred eCCch---hhhhhC-CCCccEEECCCCChHHHHHHHHHh
Q 045458 169 TRDKQ---LLVAHE-VDEEHILNLDVLNNDEALQLFSMK 203 (1170)
Q Consensus 169 TR~~~---v~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~ 203 (1170)
|-++- +.+... ....+.+.|...+.+++.+.++-.
T Consensus 307 T~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 307 TLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred cHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 53321 111111 122347999999999999998743
No 275
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.80 E-value=0.00068 Score=63.40 Aligned_cols=103 Identities=20% Similarity=0.294 Sum_probs=51.7
Q ss_pred ccEEEeeCCCCCC--CcchhhcCCcccCeEeccCcCCCccCcccc-CCCCCCEEeccCCcCCccccccCCCCCCCCEEEe
Q 045458 612 LRSLVLSGCSKLK--KFPEIVESMEDLSELFLDGTSITEVPSSIE-LLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNL 688 (1170)
Q Consensus 612 L~~L~L~~~~~~~--~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~-~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L 688 (1170)
+..++|+.|.... ..+..+.....|...++++|.+.++|..+. .++.++.|++.+|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-------------------- 88 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-------------------- 88 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh--------------------
Confidence 4455666664431 223334444556666677776666665543 23355555555433
Q ss_pred eCcCCCCCCccccCCCCCCcEEEccCccCCCCCccccCCCCCcEEEecCCC
Q 045458 689 SGCFKLENVPETLGQVESLEELHISGTAIRQPPSGIFHMKNLKALYFRGCK 739 (1170)
Q Consensus 689 ~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~ 739 (1170)
+..+|+.+..++.|+.|+++.|.+...|.-+..+.+|-+|+..++.
T Consensus 89 -----isdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 89 -----ISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred -----hhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCc
Confidence 3334444444555555555555555555444445555555544444
No 276
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.80 E-value=0.047 Score=65.33 Aligned_cols=52 Identities=31% Similarity=0.447 Sum_probs=41.7
Q ss_pred CCccCccccchhhHHHHHHHHcCC---CCCeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 24 PETIKELVGIESRLEKIRFLMGTG---SSDVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 24 ~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
|...++++.-.+.++++..||... ....+++.++|++|+||||.++.++++.
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 445566777778889999998652 2346799999999999999999999875
No 277
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.79 E-value=0.019 Score=59.74 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=24.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
+++|.++|+.|+||||.+.+++.+.+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~ 28 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK 28 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc
Confidence 3789999999999999999988876655
No 278
>PRK09354 recA recombinase A; Provisional
Probab=95.78 E-value=0.053 Score=61.07 Aligned_cols=79 Identities=19% Similarity=0.227 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhhcc----cCCCc--cCccccchhhHHHHHHHHc-CCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccC
Q 045458 8 FIEEIVNVISSKIH----TEPET--IKELVGIESRLEKIRFLMG-TGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFD 80 (1170)
Q Consensus 8 ~i~~i~~~i~~~l~----~~~~~--~~~~vGr~~~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~ 80 (1170)
-++..+.+|-++.. ..... ....--...-...|..+|. .+-+.-+++-|+|++|+||||||.+++......-.
T Consensus 10 ~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~ 89 (349)
T PRK09354 10 ALEAALKQIEKQFGKGSIMRLGDDAAMDVEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGG 89 (349)
T ss_pred HHHHHHHHHHHHhCCCCceEcccccccCCceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 46667777777664 11111 1112223444567777887 44455689999999999999999998877665556
Q ss_pred ceeEEE
Q 045458 81 GSSFLA 86 (1170)
Q Consensus 81 ~~~~~~ 86 (1170)
.++|+.
T Consensus 90 ~~~yId 95 (349)
T PRK09354 90 TAAFID 95 (349)
T ss_pred cEEEEC
Confidence 667775
No 279
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.78 E-value=0.0075 Score=63.00 Aligned_cols=150 Identities=17% Similarity=0.119 Sum_probs=86.9
Q ss_pred HHHhhcCCCCCCCcEEEcCCCCCCCcCCC-----CCCCCCccEEEeeccCCccc----ccccccCCCCccEEEeeCCCCC
Q 045458 459 EELWKGIKSLNMLKVMKVSYSQSLIKIPD-----FTGVPNLEKLYLEGCTRLRE----IHPSLLLHSKLVILNLTGCTSL 529 (1170)
Q Consensus 459 ~~L~~~l~~l~~L~~L~Ls~~~~l~~~~~-----~~~l~~L~~L~L~~~~~l~~----~~~~i~~l~~L~~L~L~~c~~l 529 (1170)
.-|.+.+-+|++|+.++||+|.+....|. +++..+|.+|.+++|..-.. +...+.++. .++..
T Consensus 82 ~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la--------~nKKa 153 (388)
T COG5238 82 VMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLA--------YNKKA 153 (388)
T ss_pred HHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHH--------HHhhh
Confidence 33455677899999999999987766653 68889999999998753211 111111111 11111
Q ss_pred CccCccccCCcccEEEecCCCCCCc----cccccCCCCCCcEEEecCccCCcc------CcchhcCCCCCEEeccCCCCC
Q 045458 530 ATLPGKIFMKSVKKLVLSGCSKLKK----FPKIVGNMECLSKLLLDGTAIGEL------PLSIELLSKLVSLDLNNCKNF 599 (1170)
Q Consensus 530 ~~lp~~~~l~~L~~L~L~~~~~~~~----l~~~l~~l~~L~~L~L~~~~i~~l------~~~i~~l~~L~~L~L~~~~~l 599 (1170)
.+ -+.|+......|..... ....+..-.+|+++.+..|.|..- -..+.++.+|+.|||..|...
T Consensus 154 a~------kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 154 AD------KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred cc------CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 11 33455555555432211 112233335788888888877421 123467788888888887654
Q ss_pred Cc----CccccCCCCcccEEEeeCCCC
Q 045458 600 KN----LPVTISSLKCLRSLVLSGCSK 622 (1170)
Q Consensus 600 ~~----lp~~l~~l~~L~~L~L~~~~~ 622 (1170)
.. +...+...+.|+.|.+..|-.
T Consensus 228 ~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 228 LEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred hhhHHHHHHHhcccchhhhccccchhh
Confidence 32 233445556677777776643
No 280
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.75 E-value=0.037 Score=59.84 Aligned_cols=50 Identities=20% Similarity=0.137 Sum_probs=36.1
Q ss_pred HHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 37 LEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 37 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
+..|.++|..+-+.-.++.|+|.+|+|||++|.++......+-..+.|+.
T Consensus 11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred CHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 34566677655556689999999999999999999665433334556665
No 281
>PRK06762 hypothetical protein; Provisional
Probab=95.74 E-value=0.039 Score=56.06 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=22.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
++|+|+|++|+||||+|+.+.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999876
No 282
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.049 Score=66.90 Aligned_cols=118 Identities=18% Similarity=0.253 Sum_probs=70.8
Q ss_pred CccccchhhHHHHHHHHcCCC-------CCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHH
Q 045458 28 KELVGIESRLEKIRFLMGTGS-------SDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVIS 100 (1170)
Q Consensus 28 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 100 (1170)
...+|-+..++.+.+.+.... .........|+.|||||-||++++..+-+.=+..+-+. ..+..+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D-MSEy~E------- 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRID-MSEYME------- 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeec-hHHHHH-------
Confidence 458999999988887764421 23467778999999999999999986543223233332 333222
Q ss_pred HHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeE-EEEEeCCCCH--HHHHHhhcCcC
Q 045458 101 LQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKV-LLIIDDVADV--EQLQSLAGKRD 157 (1170)
Q Consensus 101 l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~-LlVLDdv~~~--~~l~~l~~~~~ 157 (1170)
+.-.+++.+....-+ ..++ -..+-+..+.++| +|.||.|+.. +-++-+...++
T Consensus 563 --kHsVSrLIGaPPGYV-Gyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlD 618 (786)
T COG0542 563 --KHSVSRLIGAPPGYV-GYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLD 618 (786)
T ss_pred --HHHHHHHhCCCCCCc-eecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhc
Confidence 223344442222222 2222 2346667778877 7788999754 45555555544
No 283
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.66 E-value=0.042 Score=63.09 Aligned_cols=50 Identities=24% Similarity=0.291 Sum_probs=36.9
Q ss_pred HHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 37 LEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 37 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
+.++.++|..+-..-.++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 45666777544344579999999999999999999987665544455654
No 284
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.22 Score=51.57 Aligned_cols=154 Identities=17% Similarity=0.337 Sum_probs=86.6
Q ss_pred CCCccCcccc-chhhHHHHHHHHcCC-----------CCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecch
Q 045458 23 EPETIKELVG-IESRLEKIRFLMGTG-----------SSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVRE 90 (1170)
Q Consensus 23 ~~~~~~~~vG-r~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~ 90 (1170)
.|...-+.|| .+..+++|.+.+... -.++.-|.++|++|.|||-||+++++.- .||+..+..
T Consensus 141 vPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht------~c~firvsg 214 (404)
T KOG0728|consen 141 VPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT------DCTFIRVSG 214 (404)
T ss_pred CCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc------ceEEEEech
Confidence 3444444555 577788887766432 1456778899999999999999998643 233332322
Q ss_pred hhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhh----CCCeEEEEEeCCCCHH--------------H--HH
Q 045458 91 KSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRL----RQKKVLLIIDDVADVE--------------Q--LQ 150 (1170)
Q Consensus 91 ~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L----~~k~~LlVLDdv~~~~--------------~--l~ 150 (1170)
. +-+|+-+. ++..++++.+ ..-+-.|..|.+|+.. | .-
T Consensus 215 s-------elvqk~ig---------------egsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtml 272 (404)
T KOG0728|consen 215 S-------ELVQKYIG---------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTML 272 (404)
T ss_pred H-------HHHHHHhh---------------hhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHH
Confidence 1 11222221 1222222222 2467788888876431 1 11
Q ss_pred HhhcCcCCC--CCCcEEEEEeCCchhhhhhCCC---CccEEECCCCChHHHHHHHHHhh
Q 045458 151 SLAGKRDWF--GPGSRILITTRDKQLLVAHEVD---EEHILNLDVLNNDEALQLFSMKA 204 (1170)
Q Consensus 151 ~l~~~~~~~--~~gsrIIiTTR~~~v~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~a 204 (1170)
+++..++.| .+.-+||.+|..-+++...-.. -++.++.++-+++...+.+.-+.
T Consensus 273 ellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 273 ELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred HHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 222233323 3566888888665554432211 12378888888888878776554
No 285
>PRK07261 topology modulation protein; Provisional
Probab=95.63 E-value=0.031 Score=56.98 Aligned_cols=23 Identities=43% Similarity=0.583 Sum_probs=20.5
Q ss_pred EEEEEeCCCccHHHHHHHHHhhh
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
.|+|+|++|+||||||+++....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998754
No 286
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.62 E-value=0.056 Score=58.52 Aligned_cols=50 Identities=12% Similarity=0.132 Sum_probs=37.0
Q ss_pred HHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 37 LEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 37 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
+..|.++|..+-..-.++.|.|.+|.|||++|.++......+-+.++|+.
T Consensus 7 i~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 7 IPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred cHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 34566677655556689999999999999999987765434445677776
No 287
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.065 Score=57.51 Aligned_cols=29 Identities=38% Similarity=0.537 Sum_probs=25.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhcccc
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSYEF 79 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~f 79 (1170)
+..++|||.+|.|||-+|++|+..+-..|
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 57899999999999999999998775443
No 288
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.31 Score=50.60 Aligned_cols=146 Identities=21% Similarity=0.331 Sum_probs=82.7
Q ss_pred ccccchhhHHHHHHHHcC-----------CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCc
Q 045458 29 ELVGIESRLEKIRFLMGT-----------GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGS 97 (1170)
Q Consensus 29 ~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 97 (1170)
+.-|.|-..+++.+.... +-+..|-|.++|++|.|||.||+++++.-...| +-.+..
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f-----irvvgs------- 223 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF-----IRVVGS------- 223 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe-----eeeccH-------
Confidence 466788777888776543 124567889999999999999999998765443 332211
Q ss_pred HHHHHHHHHHHHhhcCCCccccchhhHHHHHHh----hCCCeEEEEEeCCCCHH--------------H--HHHhhcCcC
Q 045458 98 VISLQKQLLSNLLKLGDISIWHVEDGINIIGSR----LRQKKVLLIIDDVADVE--------------Q--LQSLAGKRD 157 (1170)
Q Consensus 98 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~----L~~k~~LlVLDdv~~~~--------------~--l~~l~~~~~ 157 (1170)
+-+|+-+ + ++..++++. -.+.+-.|.+|.++... | +-+++...+
T Consensus 224 -efvqkyl------g---------egprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmd 287 (408)
T KOG0727|consen 224 -EFVQKYL------G---------EGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMD 287 (408)
T ss_pred -HHHHHHh------c---------cCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhcc
Confidence 1222221 1 111222222 23567888899886432 1 223333333
Q ss_pred CC--CCCcEEEEEeCCchhhhh-----hCCCCccEEECCCCChHHHHHHHHHhh
Q 045458 158 WF--GPGSRILITTRDKQLLVA-----HEVDEEHILNLDVLNNDEALQLFSMKA 204 (1170)
Q Consensus 158 ~~--~~gsrIIiTTR~~~v~~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a 204 (1170)
.| ....+||.+|.....+.. -..+. .++.+--+..+-.-.|....
T Consensus 288 gfdq~~nvkvimatnradtldpallrpgrldr--kiefplpdrrqkrlvf~tit 339 (408)
T KOG0727|consen 288 GFDQTTNVKVIMATNRADTLDPALLRPGRLDR--KIEFPLPDRRQKRLVFSTIT 339 (408)
T ss_pred CcCcccceEEEEecCcccccCHhhcCCccccc--cccCCCCchhhhhhhHHhhh
Confidence 33 345688887755432222 12233 67777556666666676554
No 289
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.53 E-value=0.092 Score=58.47 Aligned_cols=133 Identities=20% Similarity=0.220 Sum_probs=68.8
Q ss_pred HHHHHHHHHhhcc----cCCCc---cCccccchhhHHHHHHHHcCCC-CCeEEEEEEeCCCccHHHHHHHHHhhhccccC
Q 045458 9 IEEIVNVISSKIH----TEPET---IKELVGIESRLEKIRFLMGTGS-SDVRMIGIWGMGGLGKTTLARVVYDSMSYEFD 80 (1170)
Q Consensus 9 i~~i~~~i~~~l~----~~~~~---~~~~vGr~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~ 80 (1170)
|++.+.+|-++.. ..... ....--...-...|..+|..+. +.-+++-|+|..|+||||||..+.......-.
T Consensus 3 l~~~~~~i~k~~g~~~i~~lg~~~~~~~~~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~ 82 (322)
T PF00154_consen 3 LEKALKQIEKKFGKGSIMRLGDNAESQNIEVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGG 82 (322)
T ss_dssp HHHHHHHHHHHHTTTSSEETTS-C-GCSS-EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhCCCceeecCCcccccccceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccc
Confidence 5566666666654 11111 1122233455667777886332 44589999999999999999999987766656
Q ss_pred ceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCC-CeEEEEEeCCCCHH
Q 045458 81 GSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQ-KKVLLIIDDVADVE 147 (1170)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~-k~~LlVLDdv~~~~ 147 (1170)
.++|++. +..-. ....+.+--.+...--..+...++....+...++. .--++|+|.|....
T Consensus 83 ~~a~ID~-----e~~ld-~~~a~~lGvdl~rllv~~P~~~E~al~~~e~lirsg~~~lVVvDSv~al~ 144 (322)
T PF00154_consen 83 ICAFIDA-----EHALD-PEYAESLGVDLDRLLVVQPDTGEQALWIAEQLIRSGAVDLVVVDSVAALV 144 (322)
T ss_dssp EEEEEES-----SS----HHHHHHTT--GGGEEEEE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT-B
T ss_pred eeEEecC-----cccch-hhHHHhcCccccceEEecCCcHHHHHHHHHHHhhcccccEEEEecCcccC
Confidence 6777762 11111 12222222221111111223344555555555554 44588999986543
No 290
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.52 E-value=0.078 Score=54.87 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=21.0
Q ss_pred EEEEEeCCCccHHHHHHHHHhhh
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
+|.|.|++|+||||+|+.+++++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998865
No 291
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.49 E-value=0.039 Score=65.66 Aligned_cols=28 Identities=36% Similarity=0.514 Sum_probs=24.4
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 49 SDVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 49 ~~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
+.-++..++|++|+||||||..++.+..
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG 351 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG 351 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC
Confidence 4568999999999999999999988643
No 292
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.49 E-value=0.049 Score=68.79 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=38.9
Q ss_pred ccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 26 TIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 26 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
....++|+...+.++.+.+..-...-.-|.|+|..|+|||++|+.++..-
T Consensus 374 ~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 374 EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 34579999998888876665433333568899999999999999998754
No 293
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.49 E-value=0.043 Score=59.45 Aligned_cols=49 Identities=20% Similarity=0.301 Sum_probs=34.3
Q ss_pred HHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccc------cCceeEEE
Q 045458 38 EKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE------FDGSSFLA 86 (1170)
Q Consensus 38 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~ 86 (1170)
..|.++|..+-..-.++.|+|.+|+|||++|.+++...... -..++|+.
T Consensus 6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 6 KALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 34556665444456899999999999999999997543222 24566665
No 294
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.49 E-value=0.034 Score=55.99 Aligned_cols=29 Identities=31% Similarity=0.353 Sum_probs=24.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccccC
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYEFD 80 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~f~ 80 (1170)
+.|.++|.+|+||||+|+.++..+++.-.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~ 30 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIW 30 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhh
Confidence 56889999999999999999987766543
No 295
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.48 E-value=0.12 Score=63.35 Aligned_cols=50 Identities=12% Similarity=0.147 Sum_probs=40.2
Q ss_pred ccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 26 TIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 26 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
..+.++|....++++.+.+..-.....-|.|+|..|+|||++|+.+++.-
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 45689999999998887776543344567899999999999999998754
No 296
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.46 E-value=0.047 Score=53.94 Aligned_cols=99 Identities=20% Similarity=0.261 Sum_probs=55.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSR 130 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~ 130 (1170)
-.+++|.|..|.|||||++.+...... ..+.+++.......-... ...-....-.+.+.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~~~~~i~~~~~--------------------lS~G~~~rv~lara 84 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEP-DEGIVTWGSTVKIGYFEQ--------------------LSGGEKMRLALAKL 84 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEECCeEEEEEEcc--------------------CCHHHHHHHHHHHH
Confidence 368999999999999999999875432 244444432111000000 00111122234555
Q ss_pred hCCCeEEEEEeCCC---CH---HHHHHhhcCcCCCCCCcEEEEEeCCchhh
Q 045458 131 LRQKKVLLIIDDVA---DV---EQLQSLAGKRDWFGPGSRILITTRDKQLL 175 (1170)
Q Consensus 131 L~~k~~LlVLDdv~---~~---~~l~~l~~~~~~~~~gsrIIiTTR~~~v~ 175 (1170)
+..++-++++|+-. +. ..+..+.... +..||++|.+....
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~-----~~til~~th~~~~~ 130 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY-----PGTVILVSHDRYFL 130 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc-----CCEEEEEECCHHHH
Confidence 66677789999863 22 2333333221 24788888876644
No 297
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.44 E-value=0.032 Score=61.83 Aligned_cols=127 Identities=22% Similarity=0.179 Sum_probs=72.6
Q ss_pred CccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHH
Q 045458 28 KELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLS 107 (1170)
Q Consensus 28 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 107 (1170)
+.++-.+...+++.++|...-...+.|.|.|..|.||||+++++...+...-...+-+.+..+.......
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~---------- 173 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPN---------- 173 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSS----------
T ss_pred hhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccc----------
Confidence 4454444445566666654322348899999999999999999998766551233444433332111100
Q ss_pred HHhhcCCCcc-ccchhhHHHHHHhhCCCeEEEEEeCCCCHHHHHHhhcCcCCCCCCcEE-EEEeCCc
Q 045458 108 NLLKLGDISI-WHVEDGINIIGSRLRQKKVLLIIDDVADVEQLQSLAGKRDWFGPGSRI-LITTRDK 172 (1170)
Q Consensus 108 ~l~~~~~~~~-~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrI-IiTTR~~ 172 (1170)
...... ....+..+.++..|+..+=.+|++.+.+.+..+.+... ..|..+ +-|....
T Consensus 174 ----~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~Ha~ 232 (270)
T PF00437_consen 174 ----QIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLHAN 232 (270)
T ss_dssp ----EEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE-S
T ss_pred ----eEEEEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeeecC
Confidence 000000 13345567788899999999999999988877774433 356667 5555443
No 298
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.43 E-value=0.028 Score=65.52 Aligned_cols=47 Identities=17% Similarity=0.143 Sum_probs=39.1
Q ss_pred cCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 27 IKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 27 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
...++||+..++.+...+..+ .-|.|.|++|+|||++|+.+......
T Consensus 19 ~~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHhcc
Confidence 347999999999998887654 34789999999999999999986543
No 299
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.43 E-value=0.053 Score=53.47 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.0
Q ss_pred EEEEEeCCCccHHHHHHHHHhhhc
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
+|.+.|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 588999999999999999986543
No 300
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.38 E-value=0.17 Score=59.10 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=23.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
+.++.++|.+|+||||.|..++..+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 67999999999999999999887754
No 301
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.34 E-value=0.023 Score=56.20 Aligned_cols=35 Identities=31% Similarity=0.264 Sum_probs=29.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
.+|.|+|.+|.||||||+++.+++...-..+.++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 68999999999999999999999887765555554
No 302
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.34 E-value=0.095 Score=54.78 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=28.4
Q ss_pred HHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 38 EKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 38 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
+.+...+.. +-++++|.|.+|.||||+++.+...+...
T Consensus 8 ~a~~~~l~~---~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 8 EAVRAILTS---GDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHHHC---TCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhc---CCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 344445443 23688899999999999999998876654
No 303
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.095 Score=62.73 Aligned_cols=178 Identities=18% Similarity=0.238 Sum_probs=99.7
Q ss_pred cCccccchhhHHHHHHHHcC---C-------CCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCC
Q 045458 27 IKELVGIESRLEKIRFLMGT---G-------SSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEG 96 (1170)
Q Consensus 27 ~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 96 (1170)
..+.-|.|...+++.+.++- . ..-++=|.++|++|.|||.||++++.+..-.| +.- +..
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPF-----f~i----SGS-- 217 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FSI----SGS-- 217 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCc-----eec----cch--
Confidence 45678988888777766532 1 12256789999999999999999997654332 110 000
Q ss_pred cHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH---------------H-HHHHhhcCcCCCC
Q 045458 97 SVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV---------------E-QLQSLAGKRDWFG 160 (1170)
Q Consensus 97 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~---------------~-~l~~l~~~~~~~~ 160 (1170)
+.. ++.-. .......+.+.+..++-+..+++|.+|.. + .+.++....+.|+
T Consensus 218 ---~FV-emfVG---------vGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~ 284 (596)
T COG0465 218 ---DFV-EMFVG---------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG 284 (596)
T ss_pred ---hhh-hhhcC---------CCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC
Confidence 000 00000 01122334455566677899999987532 2 3677777777776
Q ss_pred C--CcEEEEEeCCchhhhhhC---CCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchH
Q 045458 161 P--GSRILITTRDKQLLVAHE---VDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLA 231 (1170)
Q Consensus 161 ~--gsrIIiTTR~~~v~~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 231 (1170)
. |--|+..|..++|+...- ...++.+.++.-+-....+.+.-|+-...-. ...++. .|++.+-|.-.|
T Consensus 285 ~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~--~~Vdl~-~iAr~tpGfsGA 357 (596)
T COG0465 285 GNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA--EDVDLK-KIARGTPGFSGA 357 (596)
T ss_pred CCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC--CcCCHH-HHhhhCCCcccc
Confidence 3 333444444444432221 1122377788888788888888776333222 111212 266666665443
No 304
>PRK08233 hypothetical protein; Provisional
Probab=95.33 E-value=0.05 Score=56.20 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=23.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
..+|+|.|.+|.||||+|+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 37899999999999999999998654
No 305
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.33 E-value=0.12 Score=51.83 Aligned_cols=58 Identities=16% Similarity=0.178 Sum_probs=38.0
Q ss_pred hhhHHHHHHhhCCCeEEEEEeC----CCCHHHHHHhhcCcCCCCCCcEEEEEeCCchhhhhh
Q 045458 121 EDGINIIGSRLRQKKVLLIIDD----VADVEQLQSLAGKRDWFGPGSRILITTRDKQLLVAH 178 (1170)
Q Consensus 121 ~~~~~~i~~~L~~k~~LlVLDd----v~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~ 178 (1170)
++..-.|.+.+-+++-+++-|. +|-...|+-+.-.-.-...|..||++|.+.++-..+
T Consensus 142 EQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhc
Confidence 3445567788889999999995 444444433221111225799999999999876554
No 306
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.33 Score=51.76 Aligned_cols=172 Identities=16% Similarity=0.162 Sum_probs=89.9
Q ss_pred CccccchhhHHHHHHHHcC----------CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCc
Q 045458 28 KELVGIESRLEKIRFLMGT----------GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGS 97 (1170)
Q Consensus 28 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 97 (1170)
.+.-|.|...+.|.+..-. +...-+-|.++|++|.||+-||++|+-+.... |+.. +.
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST-----FFSv----SS---- 199 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST-----FFSV----SS---- 199 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCc-----eEEe----eh----
Confidence 5678888888888775422 12235789999999999999999999765432 3331 11
Q ss_pred HHHHHHHHHHHHhhcCCCccccchhhHHHHHHhh-CCCeEEEEEeCCCCH---------HHH-----HHhhc--CcCCCC
Q 045458 98 VISLQKQLLSNLLKLGDISIWHVEDGINIIGSRL-RQKKVLLIIDDVADV---------EQL-----QSLAG--KRDWFG 160 (1170)
Q Consensus 98 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L-~~k~~LlVLDdv~~~---------~~l-----~~l~~--~~~~~~ 160 (1170)
.++....+.+ .+.....+.+.- .+|+-.|.+|.||.. +.- +.+.. ......
T Consensus 200 -SDLvSKWmGE-----------SEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~ 267 (439)
T KOG0739|consen 200 -SDLVSKWMGE-----------SEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDN 267 (439)
T ss_pred -HHHHHHHhcc-----------HHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCC
Confidence 1111111111 111111122221 368889999998642 111 11111 112223
Q ss_pred CCcEEEEEeCCchhhhhhC---CCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCC
Q 045458 161 PGSRILITTRDKQLLVAHE---VDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGL 228 (1170)
Q Consensus 161 ~gsrIIiTTR~~~v~~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 228 (1170)
.|.-|+-.|..+-++.... .+. .|-++--+......+|.-+...... .--++-.+++.+++.|.
T Consensus 268 ~gvLVLgATNiPw~LDsAIRRRFek--RIYIPLPe~~AR~~MF~lhlG~tp~--~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 268 DGVLVLGATNIPWVLDSAIRRRFEK--RIYIPLPEAHARARMFKLHLGDTPH--VLTEQDFKELARKTEGY 334 (439)
T ss_pred CceEEEecCCCchhHHHHHHHHhhc--ceeccCCcHHHhhhhheeccCCCcc--ccchhhHHHHHhhcCCC
Confidence 5667777887776554322 222 2333333344445677777643322 11222344455555554
No 307
>PRK10867 signal recognition particle protein; Provisional
Probab=95.31 E-value=0.23 Score=58.06 Aligned_cols=41 Identities=22% Similarity=0.317 Sum_probs=29.7
Q ss_pred HHHHHHHcCC-------CCCeEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 38 EKIRFLMGTG-------SSDVRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 38 ~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
++|.+++... .+...+|.++|.+|+||||.|..++..+..+
T Consensus 80 ~el~~~l~~~~~~~~~~~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 80 DELVEILGGENSELNLAAKPPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred HHHHHHhCCCcceeeecCCCCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 3555666432 1336899999999999999988888766544
No 308
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.29 E-value=0.072 Score=52.98 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=21.5
Q ss_pred EEEEEeCCCccHHHHHHHHHhhhc
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
+|.|+|.+|.||||+|+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998764
No 309
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.25 E-value=0.032 Score=59.47 Aligned_cols=52 Identities=25% Similarity=0.382 Sum_probs=35.6
Q ss_pred HHHHHHhhCCCeEEEEEeC----CCCH--HHHHHhhcCcCCCCCCcEEEEEeCCchhhhh
Q 045458 124 INIIGSRLRQKKVLLIIDD----VADV--EQLQSLAGKRDWFGPGSRILITTRDKQLLVA 177 (1170)
Q Consensus 124 ~~~i~~~L~~k~~LlVLDd----v~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~ 177 (1170)
.-.+.+.|.+++=|+|||. ||.. ..+..+...+. ..|..|+++|.|-.....
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHHhHh
Confidence 3467788999999999996 3433 33555554443 348999999999764433
No 310
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.24 E-value=0.015 Score=56.11 Aligned_cols=22 Identities=45% Similarity=0.742 Sum_probs=20.5
Q ss_pred EEEEeCCCccHHHHHHHHHhhh
Q 045458 54 IGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 54 i~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
|+|.|++|+||||+|+++.++.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999874
No 311
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.19 E-value=0.077 Score=58.07 Aligned_cols=116 Identities=14% Similarity=0.086 Sum_probs=64.2
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhh------cCCCcc-ccch
Q 045458 49 SDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLK------LGDISI-WHVE 121 (1170)
Q Consensus 49 ~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~------~~~~~~-~~~~ 121 (1170)
++..-++|.|..|.|||||.+.+...+... .+.+++.. +.... .+...++...... ....+. .+..
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g-~~v~~-----~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~ 181 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRG-KKVGI-----VDERSEIAGCVNGVPQHDVGIRTDVLDGCP 181 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECC-EEeec-----chhHHHHHHHhcccccccccccccccccch
Confidence 345789999999999999999999876543 22333321 11100 0001122111110 000010 0111
Q ss_pred hhHHHHHHhh-CCCeEEEEEeCCCCHHHHHHhhcCcCCCCCCcEEEEEeCCchhh
Q 045458 122 DGINIIGSRL-RQKKVLLIIDDVADVEQLQSLAGKRDWFGPGSRILITTRDKQLL 175 (1170)
Q Consensus 122 ~~~~~i~~~L-~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~ 175 (1170)
.. .-+...+ ...+=++++|.+...+.+..+..... .|..||+||.+..+.
T Consensus 182 k~-~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 182 KA-EGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVE 232 (270)
T ss_pred HH-HHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHH
Confidence 11 1122222 25778999999988887777665542 578899999986653
No 312
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.18 E-value=0.066 Score=54.36 Aligned_cols=115 Identities=17% Similarity=0.163 Sum_probs=58.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEe---cchhhccCCcH-HHHHHHHHHHHhhcCCCccccchhhHHH
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLAD---VREKSEKEGSV-ISLQKQLLSNLLKLGDISIWHVEDGINI 126 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~---~~~~~~~~~~~-~~l~~~ll~~l~~~~~~~~~~~~~~~~~ 126 (1170)
-.+++|.|..|.|||||++.+....... .+.+++.. +....+..... ..+.+.+.. ........-+...-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~----~~~~~LS~G~~~rv~ 101 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWG-SGRIGMPEGEDLLFLPQRPYLPLGTLREQLIY----PWDDVLSGGEQQRLA 101 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCCceEEEECCCCccccccHHHHhhc----cCCCCCCHHHHHHHH
Confidence 3689999999999999999998754322 23333321 11111111110 112222211 011111122223334
Q ss_pred HHHhhCCCeEEEEEeCCCC------HHHHHHhhcCcCCCCCCcEEEEEeCCchhh
Q 045458 127 IGSRLRQKKVLLIIDDVAD------VEQLQSLAGKRDWFGPGSRILITTRDKQLL 175 (1170)
Q Consensus 127 i~~~L~~k~~LlVLDdv~~------~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~ 175 (1170)
+.+.+..++=++++|+-.. ...+..+... . +..||++|.+....
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~---~--~~tiiivsh~~~~~ 151 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKE---L--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHH---h--CCEEEEEeCChhHH
Confidence 5566667778889997532 2223333322 1 36788888887643
No 313
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.15 E-value=0.1 Score=69.27 Aligned_cols=27 Identities=22% Similarity=0.226 Sum_probs=23.2
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
-.+=|.++|++|.|||.||++++.+..
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcC
Confidence 356788999999999999999998643
No 314
>PRK04328 hypothetical protein; Provisional
Probab=95.15 E-value=0.064 Score=58.44 Aligned_cols=49 Identities=12% Similarity=0.104 Sum_probs=35.5
Q ss_pred HHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 38 EKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 38 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
..|.++|..+-..-.++.|.|.+|.|||+||.++......+-+.++|+.
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3555666654445689999999999999999998765434445566665
No 315
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.15 E-value=0.27 Score=57.15 Aligned_cols=29 Identities=24% Similarity=0.221 Sum_probs=24.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
...+|.++|.+|+||||.|..++..++.+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999988765543
No 316
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.14 E-value=0.038 Score=60.35 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=22.4
Q ss_pred EEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
+|.++|.+|+||||+|+++.+.....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999876543
No 317
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.12 E-value=0.044 Score=60.05 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=20.7
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
+.|.|+|.+|.||||+|+++...+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 57899999999999999999987665
No 318
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.11 E-value=0.21 Score=58.62 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=22.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
.++++++|++|+||||++..++....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999998887654
No 319
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.09 E-value=2 Score=47.83 Aligned_cols=168 Identities=13% Similarity=0.054 Sum_probs=89.4
Q ss_pred HHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccc---------cC-ceeEEEecchhhccCCcHHHHHHHHH
Q 045458 37 LEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE---------FD-GSSFLADVREKSEKEGSVISLQKQLL 106 (1170)
Q Consensus 37 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~---------f~-~~~~~~~~~~~~~~~~~~~~l~~~ll 106 (1170)
++.+...+..+ .-.++..++|..|+||+++|+.+.+.+-.. .+ ...++. .. ...-.+.++ .++.
T Consensus 5 ~~~l~~~i~~~-~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~~---g~~i~vd~I-r~l~ 78 (299)
T PRK07132 5 IKFLDNSATQN-KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-IF---DKDLSKSEF-LSAI 78 (299)
T ss_pred HHHHHHHHHhC-CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-cC---CCcCCHHHH-HHHH
Confidence 34555556442 234777899999999999999999876211 11 111111 00 000110111 1122
Q ss_pred HHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH--HHHHhhcCcCCCCCCcEEEEEeCCc-hhhhhhCCCCc
Q 045458 107 SNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVE--QLQSLAGKRDWFGPGSRILITTRDK-QLLVAHEVDEE 183 (1170)
Q Consensus 107 ~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTTR~~-~v~~~~~~~~~ 183 (1170)
..+... ..-.+++=++|+|+++... ...++...+..-++++.+|++|... .+...- ....
T Consensus 79 ~~~~~~----------------~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI-~SRc 141 (299)
T PRK07132 79 NKLYFS----------------SFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTI-VSRC 141 (299)
T ss_pred HHhccC----------------CcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHH-HhCe
Confidence 211100 0001466688899987653 3445555544446777777766543 333321 2233
Q ss_pred cEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHH
Q 045458 184 HILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVL 235 (1170)
Q Consensus 184 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 235 (1170)
+.+++.+++.++..+.+.... . ..+.+..++..++|.=-|+..+
T Consensus 142 ~~~~f~~l~~~~l~~~l~~~~-----~---~~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 142 QVFNVKEPDQQKILAKLLSKN-----K---EKEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred EEEECCCCCHHHHHHHHHHcC-----C---ChhHHHHHHHHcCCHHHHHHHH
Confidence 489999999999998886531 1 1133555666666633455443
No 320
>PTZ00494 tuzin-like protein; Provisional
Probab=95.07 E-value=1.7 Score=49.61 Aligned_cols=180 Identities=13% Similarity=0.141 Sum_probs=101.6
Q ss_pred HHHHHHHHHhhcc-------cCCCccCccccchhhHHHHHHHHcCC-CCCeEEEEEEeCCCccHHHHHHHHHhhhccccC
Q 045458 9 IEEIVNVISSKIH-------TEPETIKELVGIESRLEKIRFLMGTG-SSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFD 80 (1170)
Q Consensus 9 i~~i~~~i~~~l~-------~~~~~~~~~vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~ 80 (1170)
++--|+.+.+.++ ..+..+..+|.|+.+-..+.+.|..- ...+|++++.|.-|.||++|.+....+-. -
T Consensus 345 l~~Av~TLsk~~~~~~~~~~~a~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~---~ 421 (664)
T PTZ00494 345 LRTAIETLSKAARPRKEEGMLAAAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEG---V 421 (664)
T ss_pred HHHHHHHhhcccCCCcccccccccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcC---C
Confidence 3445666666654 23456778999999888888777542 34689999999999999999998876432 2
Q ss_pred ceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCcc-----ccchhhHHHHHHhhCCCeEEEEEe--CCCCHHH----H
Q 045458 81 GSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISI-----WHVEDGINIIGSRLRQKKVLLIID--DVADVEQ----L 149 (1170)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~-----~~~~~~~~~i~~~L~~k~~LlVLD--dv~~~~~----l 149 (1170)
..+|++ +|.. .+.+..+.+. +. ..+.+. .-+.+.....+....++.-+||+- +-.+..- .
T Consensus 422 paV~VD-VRg~---EDtLrsVVKA----Lg-V~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~ 492 (664)
T PTZ00494 422 ALVHVD-VGGT---EDTLRSVVRA----LG-VSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV 492 (664)
T ss_pred CeEEEE-ecCC---cchHHHHHHH----hC-CCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH
Confidence 356665 4432 2333444433 32 111111 111222223333345566666663 2222221 1
Q ss_pred HHhhcCcCCCCCCcEEEEEeCCchhhhhh-CCCCccEEECCCCChHHHHHHHHHhh
Q 045458 150 QSLAGKRDWFGPGSRILITTRDKQLLVAH-EVDEEHILNLDVLNNDEALQLFSMKA 204 (1170)
Q Consensus 150 ~~l~~~~~~~~~gsrIIiTTR~~~v~~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a 204 (1170)
-.|.. ...-|.|++----+.+.... .......|-++.++..+|.++-.+..
T Consensus 493 vaLac----DrRlCHvv~EVplESLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 493 VSLVS----DCQACHIVLAVPMKALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred HHHHc----cchhheeeeechHhhhchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 12221 13456777754443322111 12223479999999999999886543
No 321
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.06 E-value=0.078 Score=52.90 Aligned_cols=88 Identities=26% Similarity=0.264 Sum_probs=46.3
Q ss_pred EEeCCCccHHHHHHHHHhhhccccCceeEEE---ecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhC
Q 045458 56 IWGMGGLGKTTLARVVYDSMSYEFDGSSFLA---DVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLR 132 (1170)
Q Consensus 56 I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~---~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~ 132 (1170)
|.|++|.||||+|+.++.++. | ..+. -+++.... . ..+.+++...+..+. ..+.+-..+.+++++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~--~---~~is~~~llr~~~~~-~--s~~g~~i~~~l~~g~---~vp~~~v~~ll~~~l~ 69 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG--L---VHISVGDLLREEIKS-D--SELGKQIQEYLDNGE---LVPDELVIELLKERLE 69 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT--S---EEEEHHHHHHHHHHT-T--SHHHHHHHHHHHTTS---S--HHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcC--c---ceechHHHHHHHHhh-h--hHHHHHHHHHHHhhc---cchHHHHHHHHHHHHh
Confidence 689999999999999998752 2 2332 11221111 1 112222322232111 1123334455666554
Q ss_pred C--CeEEEEEeCC-CCHHHHHHhhc
Q 045458 133 Q--KKVLLIIDDV-ADVEQLQSLAG 154 (1170)
Q Consensus 133 ~--k~~LlVLDdv-~~~~~l~~l~~ 154 (1170)
. ..--+|||+. .+.+|.+.+..
T Consensus 70 ~~~~~~g~ildGfPrt~~Qa~~l~~ 94 (151)
T PF00406_consen 70 QPPCNRGFILDGFPRTLEQAEALEE 94 (151)
T ss_dssp SGGTTTEEEEESB-SSHHHHHHHHH
T ss_pred hhcccceeeeeeccccHHHHHHHHH
Confidence 3 2445789998 56667666544
No 322
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.05 E-value=0.061 Score=54.99 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=55.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEec--chhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHH
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADV--REKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGS 129 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~--~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~ 129 (1170)
.+++|.|..|.|||||++.+..-... ..+.+.+... ....+... ...-....-.+.+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~q~~~--------------------LSgGq~qrv~lar 84 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIP-NGDNDEWDGITPVYKPQYID--------------------LSGGELQRVAIAA 84 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCC-CCcEEEECCEEEEEEcccCC--------------------CCHHHHHHHHHHH
Confidence 68999999999999999999875432 2334444311 10111000 1111122234556
Q ss_pred hhCCCeEEEEEeCCCC---HH---HHHHhhcCcCCCCCCcEEEEEeCCchhhh
Q 045458 130 RLRQKKVLLIIDDVAD---VE---QLQSLAGKRDWFGPGSRILITTRDKQLLV 176 (1170)
Q Consensus 130 ~L~~k~~LlVLDdv~~---~~---~l~~l~~~~~~~~~gsrIIiTTR~~~v~~ 176 (1170)
.+..++-++++|+-.. .. .+..+...... ..+..||++|.+.....
T Consensus 85 al~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 85 ALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSE-EGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHH
Confidence 6667778999998632 22 22222222111 12367888888776544
No 323
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.05 E-value=0.075 Score=61.44 Aligned_cols=48 Identities=21% Similarity=0.352 Sum_probs=37.0
Q ss_pred CccccchhhHHHHHHHHc-----CCCCCeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 28 KELVGIESRLEKIRFLMG-----TGSSDVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 28 ~~~vGr~~~~~~l~~~L~-----~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
+++---.+.++++..||. ...-+.+++.|+|++|+||||-++.+....
T Consensus 82 eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 82 EELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 344444566778888887 334456899999999999999999998754
No 324
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.1 Score=58.56 Aligned_cols=51 Identities=24% Similarity=0.288 Sum_probs=38.4
Q ss_pred hhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 35 SRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 35 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
..+.++.+.|..+-=.-.+|.|-|.+|||||||..+++.++..+- .+.++.
T Consensus 77 tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs 127 (456)
T COG1066 77 TGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS 127 (456)
T ss_pred CChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe
Confidence 345667777765332347899999999999999999999987665 556654
No 325
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.03 E-value=0.1 Score=58.66 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=29.0
Q ss_pred HHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHh
Q 045458 37 LEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYD 73 (1170)
Q Consensus 37 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~ 73 (1170)
...|.++|..+-..-+++-|+|.+|+|||+++.+++-
T Consensus 82 ~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~ 118 (313)
T TIGR02238 82 SQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCV 118 (313)
T ss_pred CHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHH
Confidence 4556677765445568899999999999999988764
No 326
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.02 E-value=0.037 Score=56.23 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=20.8
Q ss_pred EEEEEeCCCccHHHHHHHHHhhh
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
+|.|.|.+|.||||+|..+..+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 68999999999999999998764
No 327
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.00 E-value=0.12 Score=52.81 Aligned_cols=118 Identities=15% Similarity=0.207 Sum_probs=59.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCC---c-----cccchh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDI---S-----IWHVED 122 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~---~-----~~~~~~ 122 (1170)
-.+++|.|..|.|||||++.++..... ..+.+++... ...... .......+ .-+...... . ...-+.
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i~~~g~-~~~~~~--~~~~~~~i-~~~~~~~~~~~~t~~e~lLS~G~~ 102 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYDP-TSGEILIDGV-DLRDLD--LESLRKNI-AYVPQDPFLFSGTIRENILSGGQR 102 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEECCE-EhhhcC--HHHHHhhE-EEEcCCchhccchHHHHhhCHHHH
Confidence 368999999999999999999875432 2344444321 100000 00000000 000000000 0 001111
Q ss_pred hHHHHHHhhCCCeEEEEEeCCCC------HHHHHHhhcCcCCCCCCcEEEEEeCCchhhh
Q 045458 123 GINIIGSRLRQKKVLLIIDDVAD------VEQLQSLAGKRDWFGPGSRILITTRDKQLLV 176 (1170)
Q Consensus 123 ~~~~i~~~L~~k~~LlVLDdv~~------~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~ 176 (1170)
..-.+.+.+..++-+++||+-.. .+.+..+.... ..+..||++|.+.....
T Consensus 103 ~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~---~~~~tii~~sh~~~~~~ 159 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSALDPETEALILEALRAL---AKGKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHh---cCCCEEEEEecCHHHHH
Confidence 22235566667888999998632 23333333332 23577899998877553
No 328
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.98 E-value=0.0025 Score=59.71 Aligned_cols=78 Identities=9% Similarity=0.184 Sum_probs=63.2
Q ss_pred CceEEEcCCCCCCCCCCCC--CCCceeEEEccCCChHHHhhcCCCCCCCcEEEcCCCCCCCcCCCCCCCCCccEEEeecc
Q 045458 425 KLRLLDWPGYPLKSLPPNL--QLDKTIEFKMLCSRIEELWKGIKSLNMLKVMKVSYSQSLIKIPDFTGVPNLEKLYLEGC 502 (1170)
Q Consensus 425 ~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~s~i~~L~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~ 502 (1170)
+|...++++|.++++|..| ....+..|+|.+|.|.++|..+..++.|+.|+++.|........+..+.+|-.|+..++
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCC
Confidence 5777889999999999988 56688999999999999998899999999999998885554444566777777777664
No 329
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.47 Score=54.20 Aligned_cols=150 Identities=19% Similarity=0.198 Sum_probs=81.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSR 130 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~ 130 (1170)
-|=-.++|++|.|||+++.++++.+.. -++.-.+.++.. . .+ ++.++..
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~y----dIydLeLt~v~~---n-~d-Lr~LL~~---------------------- 283 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLNY----DIYDLELTEVKL---D-SD-LRHLLLA---------------------- 283 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcCC----ceEEeeeccccC---c-HH-HHHHHHh----------------------
Confidence 356789999999999999999986642 333332222211 1 11 2222222
Q ss_pred hCCCeEEEEEeCCCCHHH--------------------HHHhhcCcC--CCCC-CcEEE-EEeCCchhhhhh-----CCC
Q 045458 131 LRQKKVLLIIDDVADVEQ--------------------LQSLAGKRD--WFGP-GSRIL-ITTRDKQLLVAH-----EVD 181 (1170)
Q Consensus 131 L~~k~~LlVLDdv~~~~~--------------------l~~l~~~~~--~~~~-gsrII-iTTR~~~v~~~~-----~~~ 181 (1170)
...+-.||+.|+|-.-+ +-.|+...+ |... +-||| .||....-+... .++
T Consensus 284 -t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmD 362 (457)
T KOG0743|consen 284 -TPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMD 362 (457)
T ss_pred -CCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcce
Confidence 13455777788754311 111222221 1122 33554 566555433322 233
Q ss_pred CccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHHHHhh
Q 045458 182 EEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVLGSFL 239 (1170)
Q Consensus 182 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L 239 (1170)
- .+.+.-=+.+....|+..+..... ...++.+|.+...|.-+.=..++..|
T Consensus 363 m--hI~mgyCtf~~fK~La~nYL~~~~-----~h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 363 M--HIYMGYCTFEAFKTLASNYLGIEE-----DHRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred e--EEEcCCCCHHHHHHHHHHhcCCCC-----CcchhHHHHHHhhcCccCHHHHHHHH
Confidence 3 688888888888899988774322 22455666666666555545555444
No 330
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.54 Score=49.05 Aligned_cols=164 Identities=16% Similarity=0.304 Sum_probs=90.5
Q ss_pred ccCccccchhhHHHHHHHHcCC-----------CCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhcc
Q 045458 26 TIKELVGIESRLEKIRFLMGTG-----------SSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEK 94 (1170)
Q Consensus 26 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 94 (1170)
.-.+.-|.+..+++|.+++-.. -..++-|..||++|.|||-+|++.+.+-...| +.- ..
T Consensus 169 ~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTF-----LKL-----Ag 238 (424)
T KOG0652|consen 169 QYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATF-----LKL-----AG 238 (424)
T ss_pred cccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchH-----HHh-----cc
Confidence 3456778999999888765321 12346688999999999999999987654433 110 00
Q ss_pred CCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhh----CCCeEEEEEeCCCCH--------------HH--HHHhhc
Q 045458 95 EGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRL----RQKKVLLIIDDVADV--------------EQ--LQSLAG 154 (1170)
Q Consensus 95 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L----~~k~~LlVLDdv~~~--------------~~--l~~l~~ 154 (1170)
+ |+.... ..++...+++.+ ...+..|.+|.++.. .| .-+++.
T Consensus 239 P--------QLVQMf----------IGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLN 300 (424)
T KOG0652|consen 239 P--------QLVQMF----------IGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLN 300 (424)
T ss_pred h--------HHHhhh----------hcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHH
Confidence 0 111111 122333344333 246788889987432 11 122333
Q ss_pred CcCCCCC--CcEEEEEeCCchhhhhh-----CCCCccEEECCCCChHHHHHHHHHhhcCCC-CCChhhHHHHH
Q 045458 155 KRDWFGP--GSRILITTRDKQLLVAH-----EVDEEHILNLDVLNNDEALQLFSMKAFKTH-QPVGEYVELSE 219 (1170)
Q Consensus 155 ~~~~~~~--gsrIIiTTR~~~v~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~ 219 (1170)
.++.|.+ ..+||..|..-.++... ..+. .++.+--+++...+.+.-+.-+-. .+.-.++++++
T Consensus 301 QLDGFss~~~vKviAATNRvDiLDPALlRSGRLDR--KIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaR 371 (424)
T KOG0652|consen 301 QLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDR--KIEFPHPNEEARARILQIHSRKMNVSDDVNFEELAR 371 (424)
T ss_pred hhcCCCCccceEEEeecccccccCHHHhhcccccc--cccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhh
Confidence 3443443 45677777654443322 2333 678777777766666665554322 23345666554
No 331
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.96 E-value=0.015 Score=54.79 Aligned_cols=28 Identities=36% Similarity=0.567 Sum_probs=20.3
Q ss_pred EEEEeCCCccHHHHHHHHHhhhccccCc
Q 045458 54 IGIWGMGGLGKTTLARVVYDSMSYEFDG 81 (1170)
Q Consensus 54 i~I~G~gGiGKTtLA~~~~~~~~~~f~~ 81 (1170)
|.|+|.+|+||||+|++++..+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 6799999999999999999988777653
No 332
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.95 E-value=0.063 Score=54.85 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=20.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYD 73 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~ 73 (1170)
-.+++|.|..|.|||||.+.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 36899999999999999998863
No 333
>PRK08356 hypothetical protein; Provisional
Probab=94.93 E-value=0.22 Score=52.11 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=19.3
Q ss_pred EEEEEEeCCCccHHHHHHHHH
Q 045458 52 RMIGIWGMGGLGKTTLARVVY 72 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~ 72 (1170)
.+|+|+|++|+||||+|+.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999994
No 334
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.93 E-value=0.06 Score=57.12 Aligned_cols=43 Identities=21% Similarity=0.269 Sum_probs=31.3
Q ss_pred hHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 36 RLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 36 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
...++.+.+....++..+|||+|.+|+|||||..++...++.+
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 3444555555445667899999999999999999999877654
No 335
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.92 E-value=0.12 Score=55.43 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=31.0
Q ss_pred HHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 39 KIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 39 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
.+.+.+..+-+.-.++.|.|.+|.||||+|.+++.....+-..++++.
T Consensus 12 ~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 12 ELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred eeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 334444433344569999999999999998776655432324455554
No 336
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.92 E-value=0.14 Score=55.97 Aligned_cols=48 Identities=25% Similarity=0.303 Sum_probs=37.6
Q ss_pred HHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 39 KIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 39 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
.|..+|..+-+.-+++=|+|+.|.||||+|.+++-.....-..++|++
T Consensus 48 ~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID 95 (279)
T COG0468 48 ALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID 95 (279)
T ss_pred hHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe
Confidence 344566544456789999999999999999998877766666788887
No 337
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.92 E-value=0.42 Score=53.80 Aligned_cols=48 Identities=19% Similarity=0.146 Sum_probs=33.2
Q ss_pred EEECCCCChHHHHHHHHHhhcCCCCCC-hhhHHHHHHHHHHhCCCchHH
Q 045458 185 ILNLDVLNNDEALQLFSMKAFKTHQPV-GEYVELSERVLEYAGGLPLAL 232 (1170)
Q Consensus 185 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~GlPLal 232 (1170)
.++|++++.+|+..++..++-..--.. ...+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999988774333222 233344556666669999654
No 338
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.86 E-value=0.024 Score=58.82 Aligned_cols=94 Identities=22% Similarity=0.240 Sum_probs=53.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRL 131 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 131 (1170)
..++|.|..|.||||+++.+...+... ...+.+.+..+......... ++.. ..............+.++..+
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~l~~~l 97 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPHPNWV----RLVT---RPGNVEGSGEVTMADLLRSAL 97 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCCCCEE----EEEE---ecCCCCCCCccCHHHHHHHHh
Confidence 689999999999999999998766533 23333332222111100000 0000 000000111233456677778
Q ss_pred CCCeEEEEEeCCCCHHHHHHhh
Q 045458 132 RQKKVLLIIDDVADVEQLQSLA 153 (1170)
Q Consensus 132 ~~k~~LlVLDdv~~~~~l~~l~ 153 (1170)
+..+=.++++.+.+.+.++.+.
T Consensus 98 R~~pd~i~igEir~~ea~~~~~ 119 (186)
T cd01130 98 RMRPDRIIVGEVRGGEALDLLQ 119 (186)
T ss_pred ccCCCEEEEEccCcHHHHHHHH
Confidence 8888899999998887766544
No 339
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.85 E-value=0.052 Score=57.97 Aligned_cols=125 Identities=16% Similarity=0.185 Sum_probs=66.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhc-cCCcHHHHHHHHHHHHhhcCCC------ccccchh
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSE-KEGSVISLQKQLLSNLLKLGDI------SIWHVED 122 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~l~~~ll~~l~~~~~~------~~~~~~~ 122 (1170)
+-.+++|+|..|.||||+|+.+..-.... .+.+++.. .+... ..........+++...+...+. ....-..
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g-~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEG-KDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcC-cchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 34689999999999999999998755433 23444431 11100 0111123344455544321110 1111222
Q ss_pred hHHHHHHhhCCCeEEEEEeCCCCH------HHHHHhhcCcCCCCCCcEEEEEeCCchhhhh
Q 045458 123 GINIIGSRLRQKKVLLIIDDVADV------EQLQSLAGKRDWFGPGSRILITTRDKQLLVA 177 (1170)
Q Consensus 123 ~~~~i~~~L~~k~~LlVLDdv~~~------~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~ 177 (1170)
..-.|.+.|.-++-++|.|..-+. .|.-.+...+. ...|-..+..|.|-.+...
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~ 175 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRY 175 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhh
Confidence 234577888899999999985332 23333332221 1235566666777665443
No 340
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.83 E-value=0.024 Score=59.29 Aligned_cols=26 Identities=42% Similarity=0.580 Sum_probs=23.4
Q ss_pred EEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
+|+|.|.+|.||||+|+++...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999987643
No 341
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.81 E-value=0.088 Score=53.83 Aligned_cols=22 Identities=41% Similarity=0.465 Sum_probs=20.4
Q ss_pred EEEEEeCCCccHHHHHHHHHhh
Q 045458 53 MIGIWGMGGLGKTTLARVVYDS 74 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~ 74 (1170)
.|.|.|.+|.||||+|+.+.++
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999987
No 342
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.77 E-value=0.11 Score=61.64 Aligned_cols=52 Identities=19% Similarity=0.246 Sum_probs=38.1
Q ss_pred hhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 35 SRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 35 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
.-+.++.++|..+-..-.++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 64 TGi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 64 TGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred CCcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3456677777654445579999999999999999999887654433456655
No 343
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.77 E-value=0.15 Score=56.11 Aligned_cols=39 Identities=23% Similarity=0.223 Sum_probs=27.2
Q ss_pred cchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHH
Q 045458 32 GIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVY 72 (1170)
Q Consensus 32 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~ 72 (1170)
+|..+..--..+|.. +++..|.+.|.+|.|||.||.+..
T Consensus 228 prn~eQ~~ALdlLld--~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 228 PRNAEQRVALDLLLD--DDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred cccHHHHHHHHHhcC--CCCCeEEeeccCCccHhHHHHHHH
Confidence 344444333344443 678999999999999999987654
No 344
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.77 E-value=0.5 Score=53.60 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=27.6
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
..++++|+|+.|+||||++..++..+..+-..+.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4689999999999999999999876644422344443
No 345
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=94.76 E-value=0.033 Score=65.75 Aligned_cols=50 Identities=24% Similarity=0.307 Sum_probs=40.5
Q ss_pred CccccchhhHHHHHHHH----cCCCCCeEEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 28 KELVGIESRLEKIRFLM----GTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 28 ~~~vGr~~~~~~l~~~L----~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
++++|++..+++|.+.| .......+++.++|++|+||||||+.+.+-+..
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 35899999999998877 222345689999999999999999999985543
No 346
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.76 E-value=0.083 Score=56.44 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=20.5
Q ss_pred EEEEeCCCccHHHHHHHHHhhh
Q 045458 54 IGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 54 i~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
|+|.|++|+||||+|+.+++++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998865
No 347
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.70 E-value=0.14 Score=51.51 Aligned_cols=118 Identities=14% Similarity=0.059 Sum_probs=58.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCC-c--ccc-------c
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDI-S--IWH-------V 120 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~-~--~~~-------~ 120 (1170)
..+|-|++-.|.||||.|..++-+...+--.+.++.-+.. ....+- ....+.+.-.+...... . ..+ .
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg-~~~~GE-~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKG-AWPNGE-RAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecC-CcccCh-HHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 3578888889999999999888765443222322221111 111122 12222210000000000 0 001 1
Q ss_pred hhhHHHHHHhhCC-CeEEEEEeCCCC--------HHHHHHhhcCcCCCCCCcEEEEEeCCch
Q 045458 121 EDGINIIGSRLRQ-KKVLLIIDDVAD--------VEQLQSLAGKRDWFGPGSRILITTRDKQ 173 (1170)
Q Consensus 121 ~~~~~~i~~~L~~-k~~LlVLDdv~~--------~~~l~~l~~~~~~~~~gsrIIiTTR~~~ 173 (1170)
.++.+..++.+.. +-=|||||.+-. .+++-.+... ..++.-||+|-|+..
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~---rp~~~evVlTGR~~p 141 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQE---RPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHh---CCCCCEEEEECCCCC
Confidence 2233444455544 445999999732 2333333333 357789999999875
No 348
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.66 E-value=0.41 Score=54.74 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=24.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhcccc
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSYEF 79 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~f 79 (1170)
-.+++++|+.|+||||++.+++......+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~ 165 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRF 165 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 47999999999999999999998765443
No 349
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.66 E-value=0.11 Score=53.45 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=22.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
.+++|.|..|.|||||++.++....
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC
Confidence 6899999999999999999987543
No 350
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.65 E-value=0.16 Score=51.88 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=22.9
Q ss_pred EEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
++++.|++|.||||+++.++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999999877655
No 351
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.63 E-value=0.17 Score=57.96 Aligned_cols=109 Identities=17% Similarity=0.214 Sum_probs=63.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE-ecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHH
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA-DVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGS 129 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~ 129 (1170)
..+|.|.|..|.||||+++.+...+.......++.. +..+...... . .+.. ..... .......+.++.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~--~----~~i~----q~evg-~~~~~~~~~l~~ 190 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNK--R----SLIN----QREVG-LDTLSFANALRA 190 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCc--c----ceEE----ccccC-CCCcCHHHHHHH
Confidence 368999999999999999999887765444444432 2111110000 0 0000 00111 112344567888
Q ss_pred hhCCCeEEEEEeCCCCHHHHHHhhcCcCCCCCCcEEEEEeCCch
Q 045458 130 RLRQKKVLLIIDDVADVEQLQSLAGKRDWFGPGSRILITTRDKQ 173 (1170)
Q Consensus 130 ~L~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~ 173 (1170)
.|+..+=.|++|.+.+.+......... ..|-.|+.|+....
T Consensus 191 ~lr~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 191 ALREDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTNS 231 (343)
T ss_pred hhccCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCCC
Confidence 899999999999999887765533321 24555555555443
No 352
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.62 E-value=0.67 Score=56.03 Aligned_cols=130 Identities=23% Similarity=0.271 Sum_probs=74.4
Q ss_pred CCCcc-CccccchhhHHHHHHHHcC----------CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchh
Q 045458 23 EPETI-KELVGIESRLEKIRFLMGT----------GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREK 91 (1170)
Q Consensus 23 ~~~~~-~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~ 91 (1170)
.|.+. ++.=|.+....+|.+-+.. +-....=|.+||++|.|||-+|++|+-+.+-. |+. +..
T Consensus 666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~-----FlS-VKG- 738 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN-----FLS-VKG- 738 (953)
T ss_pred CCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee-----EEe-ecC-
Confidence 44444 5677788877777654433 22334568899999999999999999876533 444 111
Q ss_pred hccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH------------------H-HHHh
Q 045458 92 SEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVE------------------Q-LQSL 152 (1170)
Q Consensus 92 ~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~------------------~-l~~l 152 (1170)
-+ ++....+. ..+...+.+.++=..++++|.+|.+|+.. | +.++
T Consensus 739 -------PE----LLNMYVGq------SE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAEL 801 (953)
T KOG0736|consen 739 -------PE----LLNMYVGQ------SEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAEL 801 (953)
T ss_pred -------HH----HHHHHhcc------hHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHh
Confidence 11 22221111 11222333344445689999999987642 2 4444
Q ss_pred hcCcCCCCCCcEEEEEeCCchhhh
Q 045458 153 AGKRDWFGPGSRILITTRDKQLLV 176 (1170)
Q Consensus 153 ~~~~~~~~~gsrIIiTTR~~~v~~ 176 (1170)
.+..+....+.=||-+|..+++..
T Consensus 802 Dgls~~~s~~VFViGATNRPDLLD 825 (953)
T KOG0736|consen 802 DGLSDSSSQDVFVIGATNRPDLLD 825 (953)
T ss_pred hcccCCCCCceEEEecCCCccccC
Confidence 444433334445666665555443
No 353
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.60 E-value=0.032 Score=58.76 Aligned_cols=68 Identities=22% Similarity=0.152 Sum_probs=42.7
Q ss_pred CCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCcccc----hhhhcCCCCCEeeccCccCCCc
Q 045458 771 LSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVSLP----ASISRLSKLECLNLNGCKKLQS 838 (1170)
Q Consensus 771 l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~lp----~~i~~l~~L~~L~L~~c~~L~~ 838 (1170)
...+|+|+.|++++|.+..-.....+..+.+|..|++.+|..+.+- ..+.-+++|++|+-..+..-..
T Consensus 87 ~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea 158 (260)
T KOG2739|consen 87 AEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEA 158 (260)
T ss_pred hhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCccc
Confidence 4455777777777777642111222455667778888887665443 2345688999998877665443
No 354
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.56 E-value=0.13 Score=61.08 Aligned_cols=53 Identities=23% Similarity=0.244 Sum_probs=38.4
Q ss_pred hhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 34 ESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 34 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
..-+.+|.++|..+-..-.++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 77 ~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 77 SSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred ccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 34456677777654445689999999999999999999876654433455654
No 355
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.55 E-value=0.25 Score=58.57 Aligned_cols=56 Identities=29% Similarity=0.327 Sum_probs=36.5
Q ss_pred cccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhc-cccCceeEEE
Q 045458 30 LVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMS-YEFDGSSFLA 86 (1170)
Q Consensus 30 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~ 86 (1170)
..|...-...|.+++. +-..-.++.|.|.+|+|||++|..++..+. .+-..++|+.
T Consensus 174 ~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS 230 (421)
T TIGR03600 174 LTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS 230 (421)
T ss_pred CcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3455555555555554 333446899999999999999999987654 2222344554
No 356
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.55 E-value=0.066 Score=57.56 Aligned_cols=58 Identities=22% Similarity=0.239 Sum_probs=40.5
Q ss_pred HHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccC
Q 045458 37 LEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKE 95 (1170)
Q Consensus 37 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 95 (1170)
-.+|...+....++..+|||+|.||+|||||.-++..++..+--.+..+. +-..++..
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlA-VDPSSp~T 94 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLA-VDPSSPFT 94 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEE-ECCCCCCC
Confidence 35666666666678899999999999999999999887765533233332 44444443
No 357
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=0.41 Score=50.06 Aligned_cols=53 Identities=26% Similarity=0.405 Sum_probs=36.4
Q ss_pred cccchhhHHHHHHHHcC-----------CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEe
Q 045458 30 LVGIESRLEKIRFLMGT-----------GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLAD 87 (1170)
Q Consensus 30 ~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~ 87 (1170)
.-|=..++++|.+.... +-+..+-|.++|++|.|||-+|++|+++-- .+|+-.
T Consensus 179 vggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd-----acfirv 242 (435)
T KOG0729|consen 179 VGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD-----ACFIRV 242 (435)
T ss_pred ccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC-----ceEEee
Confidence 34455566666654432 123456788999999999999999998743 566653
No 358
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.48 E-value=0.03 Score=47.31 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=21.0
Q ss_pred EEEEEeCCCccHHHHHHHHHhhh
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
+|+|.|..|.||||+|+++.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 359
>PRK03839 putative kinase; Provisional
Probab=94.48 E-value=0.029 Score=57.90 Aligned_cols=24 Identities=33% Similarity=0.668 Sum_probs=21.8
Q ss_pred EEEEEeCCCccHHHHHHHHHhhhc
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
.|.|.|++|+||||+|+.++++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999764
No 360
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.48 E-value=0.39 Score=54.06 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=25.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
...+|+++|++|+||||++..++..++.+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46899999999999999999999877644
No 361
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.47 E-value=0.15 Score=56.57 Aligned_cols=28 Identities=25% Similarity=0.289 Sum_probs=24.1
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
..++|+|+|.+|+||||++..++..+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999887653
No 362
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.46 E-value=0.072 Score=55.29 Aligned_cols=33 Identities=21% Similarity=0.098 Sum_probs=25.6
Q ss_pred EEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 54 IGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 54 i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
+.|.|.+|+|||++|.+++......-..+.|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 679999999999999998776544445566665
No 363
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.46 E-value=0.16 Score=56.73 Aligned_cols=89 Identities=25% Similarity=0.268 Sum_probs=55.8
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhcccc--CceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHH
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYEF--DGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGS 129 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~ 129 (1170)
+.|.|.|..|.||||+++++.+.+.... ...+.+.+..+.......... +. ... ......+.++.
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~--------~~--~~~---~~~~~~~~l~~ 199 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQ--------LR--TSD---DAISMTRLLKA 199 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEE--------EE--ecC---CCCCHHHHHHH
Confidence 5678999999999999999998875432 233444444332211111000 00 000 11145577888
Q ss_pred hhCCCeEEEEEeCCCCHHHHHHhh
Q 045458 130 RLRQKKVLLIIDDVADVEQLQSLA 153 (1170)
Q Consensus 130 ~L~~k~~LlVLDdv~~~~~l~~l~ 153 (1170)
.|+..+=.||+..+.+.+.++.+.
T Consensus 200 aLR~~pD~iivGEiR~~ea~~~l~ 223 (299)
T TIGR02782 200 TLRLRPDRIIVGEVRGGEALDLLK 223 (299)
T ss_pred HhcCCCCEEEEeccCCHHHHHHHH
Confidence 899999999999999887766543
No 364
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.44 E-value=0.17 Score=52.18 Aligned_cols=122 Identities=21% Similarity=0.263 Sum_probs=61.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEe--cchhhcc--CCcHHHHHHHHHHHHhhcC--CCccccch---
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLAD--VREKSEK--EGSVISLQKQLLSNLLKLG--DISIWHVE--- 121 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~--~~~~~~~--~~~~~~l~~~ll~~l~~~~--~~~~~~~~--- 121 (1170)
-.+++|.|..|.|||||++.++..... ..+.+++.. +...... ... .....+++..+.-.. ........
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~~~~~-i~~~~q~l~~~gl~~~~~~~~~~LS~G~ 102 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILLDGKDLASLSPKELARK-IAYVPQALELLGLAHLADRPFNELSGGE 102 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCcCCHHHHHHH-HhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 368999999999999999999875433 344555432 1110000 000 111111333322110 11111121
Q ss_pred hhHHHHHHhhCCCeEEEEEeCCCC------HHHHHHhhcCcCCCCCCcEEEEEeCCchhh
Q 045458 122 DGINIIGSRLRQKKVLLIIDDVAD------VEQLQSLAGKRDWFGPGSRILITTRDKQLL 175 (1170)
Q Consensus 122 ~~~~~i~~~L~~k~~LlVLDdv~~------~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~ 175 (1170)
...-.+.+.+...+-++++|+-.. .+.+..+...... ..+..||++|.+....
T Consensus 103 ~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~-~~~~tiii~sh~~~~~ 161 (180)
T cd03214 103 RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR-ERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHH
Confidence 222345566667888999998632 2223333222211 1267889999887643
No 365
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.41 E-value=0.054 Score=52.07 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=28.4
Q ss_pred hHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 36 RLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 36 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
+.+++.+.+...-..-.+|++.|.-|.||||+++.+++.+
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3444444443322233689999999999999999999865
No 366
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.35 E-value=0.025 Score=52.69 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=21.9
Q ss_pred EEEEeCCCccHHHHHHHHHhhhcccc
Q 045458 54 IGIWGMGGLGKTTLARVVYDSMSYEF 79 (1170)
Q Consensus 54 i~I~G~gGiGKTtLA~~~~~~~~~~f 79 (1170)
|.|+|.+|+|||++|+.++..+...+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 56899999999999999988765443
No 367
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.34 E-value=0.16 Score=51.86 Aligned_cols=121 Identities=12% Similarity=0.022 Sum_probs=59.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHH-HHHh-hcCCCc---------ccc
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLL-SNLL-KLGDIS---------IWH 119 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll-~~l~-~~~~~~---------~~~ 119 (1170)
...|.|+|-.|-||||.|..++-+...+--.+.++.-+... ...+- ....+.+- -.+. ...... ...
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~-~~~GE-~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGA-WSTGE-RNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC-CccCH-HHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 46889999999999999998887654432223333322211 11121 12222110 0000 000000 001
Q ss_pred chhhHHHHHHhhCC-CeEEEEEeCCCCHH-----HHHHhhcCcCCCCCCcEEEEEeCCch
Q 045458 120 VEDGINIIGSRLRQ-KKVLLIIDDVADVE-----QLQSLAGKRDWFGPGSRILITTRDKQ 173 (1170)
Q Consensus 120 ~~~~~~~i~~~L~~-k~~LlVLDdv~~~~-----~l~~l~~~~~~~~~gsrIIiTTR~~~ 173 (1170)
..++.+..++.+.. +-=|||||.+-..- +.+++...+....++..||+|-|+..
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11223344445544 45599999983321 12222222222357789999999875
No 368
>PRK04040 adenylate kinase; Provisional
Probab=94.31 E-value=0.04 Score=57.01 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=23.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
.+|+|+|++|+||||+++.+.+++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 6899999999999999999998874
No 369
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.29 E-value=0.095 Score=53.04 Aligned_cols=113 Identities=18% Similarity=0.199 Sum_probs=58.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRL 131 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 131 (1170)
.+++|.|..|.|||||.+.++..... ..+.+++... ..... ..... ....+... .....-+...-.+.+.+
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~v~~~g~-~~~~~--~~~~~---~~~~i~~~--~qLS~G~~qrl~laral 97 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYKP-DSGEILVDGK-EVSFA--SPRDA---RRAGIAMV--YQLSVGERQMVEIARAL 97 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCE-ECCcC--CHHHH---HhcCeEEE--EecCHHHHHHHHHHHHH
Confidence 68999999999999999999875432 3444554321 11100 00000 00000000 00111122233455666
Q ss_pred CCCeEEEEEeCCCC---H---HHHHHhhcCcCCCCCCcEEEEEeCCchhh
Q 045458 132 RQKKVLLIIDDVAD---V---EQLQSLAGKRDWFGPGSRILITTRDKQLL 175 (1170)
Q Consensus 132 ~~k~~LlVLDdv~~---~---~~l~~l~~~~~~~~~gsrIIiTTR~~~v~ 175 (1170)
..++-++++|+-.. . +.+..+..... ..|..||++|.+....
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~~~~tiii~sh~~~~~ 145 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLR--AQGVAVIFISHRLDEV 145 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHH
Confidence 67778899998632 2 22222222211 2467889999887643
No 370
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.28 E-value=0.079 Score=54.39 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=23.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
..+|+|.|.+|.||||+|+.++.....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999987753
No 371
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.28 E-value=0.04 Score=58.43 Aligned_cols=27 Identities=41% Similarity=0.658 Sum_probs=24.3
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 49 SDVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 49 ~~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
.+..+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356899999999999999999999876
No 372
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.27 E-value=0.064 Score=60.90 Aligned_cols=46 Identities=20% Similarity=0.116 Sum_probs=34.9
Q ss_pred cccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 30 LVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 30 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
+||....+.++.+.+..-...-.-|.|+|..|+||+++|+.++..-
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 4788877777776665443334557899999999999999998743
No 373
>PRK00625 shikimate kinase; Provisional
Probab=94.26 E-value=0.034 Score=56.57 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.5
Q ss_pred EEEEEeCCCccHHHHHHHHHhhhc
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
.|.|+||+|+||||+|+.+.++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988764
No 374
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.25 E-value=0.11 Score=53.14 Aligned_cols=25 Identities=36% Similarity=0.587 Sum_probs=22.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
.+++|.|..|.|||||++.++....
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC
Confidence 6899999999999999999987543
No 375
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.24 E-value=0.22 Score=56.52 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=29.4
Q ss_pred HHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 38 EKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 38 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
..+..+|..+-..-.++-|+|.+|+|||++|.+++...
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~ 126 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNV 126 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHh
Confidence 45556665444456889999999999999999998654
No 376
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.22 E-value=0.23 Score=51.77 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDS 74 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~ 74 (1170)
-.+++|.|..|.|||||++.++..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999863
No 377
>PTZ00301 uridine kinase; Provisional
Probab=94.20 E-value=0.041 Score=57.90 Aligned_cols=29 Identities=28% Similarity=0.466 Sum_probs=24.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhcccc
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSYEF 79 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~f 79 (1170)
..+|||.|.+|.||||||+.+.+++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 46899999999999999999988775443
No 378
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.20 E-value=0.052 Score=56.34 Aligned_cols=30 Identities=40% Similarity=0.573 Sum_probs=26.8
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 49 SDVRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 49 ~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
..+.+|||.|.+|.||||+|+.+++.+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 456899999999999999999999988755
No 379
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=0.35 Score=57.52 Aligned_cols=172 Identities=19% Similarity=0.218 Sum_probs=92.5
Q ss_pred ccccchhhHHHHHHHHcC-----------CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCc
Q 045458 29 ELVGIESRLEKIRFLMGT-----------GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGS 97 (1170)
Q Consensus 29 ~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 97 (1170)
.+-|-...+..+..+... +-...+-+.++|++|.|||-+|++|+++.. +.+|..+..+.
T Consensus 185 ~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~----a~~~~i~~pel------ 254 (693)
T KOG0730|consen 185 DIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYG----AFLFLINGPEL------ 254 (693)
T ss_pred ccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhC----ceeEecccHHH------
Confidence 455566666666554422 123467889999999999999999998765 23344433221
Q ss_pred HHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCC-eEEEEEeCCCCHH------------HHHHhhcCcCCCCC--C
Q 045458 98 VISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQK-KVLLIIDDVADVE------------QLQSLAGKRDWFGP--G 162 (1170)
Q Consensus 98 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k-~~LlVLDdv~~~~------------~l~~l~~~~~~~~~--g 162 (1170)
++...+ .........+.+..+.+ +..+.+|+++..- ....+....++.++ +
T Consensus 255 --------i~k~~g------Ete~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~ 320 (693)
T KOG0730|consen 255 --------ISKFPG------ETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAK 320 (693)
T ss_pred --------HHhccc------chHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCc
Confidence 111111 01223345556666667 8888888875432 11122222233333 3
Q ss_pred cEEEEEeCCchhhhhh-C-CCCccEEECCCCChHHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHHhCCC
Q 045458 163 SRILITTRDKQLLVAH-E-VDEEHILNLDVLNNDEALQLFSMKAFKTHQP-VGEYVELSERVLEYAGGL 228 (1170)
Q Consensus 163 srIIiTTR~~~v~~~~-~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~Gl 228 (1170)
.-||-|||.+.-.... . ...++-+++.-.+.++..+.++.+.-.-+.. ..+. .+++..+.|.
T Consensus 321 vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l----~~iA~~thGy 385 (693)
T KOG0730|consen 321 VIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDL----EDIAVSTHGY 385 (693)
T ss_pred EEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhH----HHHHHHccch
Confidence 3344455554432221 1 1223367777788888888887766433332 2333 4455555554
No 380
>PRK14527 adenylate kinase; Provisional
Probab=94.12 E-value=0.14 Score=53.31 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=23.0
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
...+|.|.|.+|.||||+|+.++++.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34789999999999999999998765
No 381
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.12 E-value=0.17 Score=53.95 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.5
Q ss_pred EEEEEeCCCccHHHHHHHHHhhh
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
.|.|.|++|.||||+|+.++.++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998765
No 382
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.12 E-value=0.11 Score=58.51 Aligned_cols=110 Identities=18% Similarity=0.150 Sum_probs=61.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSR 130 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~ 130 (1170)
...++|.|..|.||||+++++...+.... ..+.+.+..+.......... +...........-...+.+...
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~--------l~~~~~~~~~~~~~~~~~l~~~ 214 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVH--------LFYSKGGQGLAKVTPKDLLQSC 214 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEE--------EEecCCCCCcCccCHHHHHHHH
Confidence 36899999999999999999987665432 23444433332211100000 0000000001112345567778
Q ss_pred hCCCeEEEEEeCCCCHHHHHHhhcCcCCCCCCcE-EEEEeCCch
Q 045458 131 LRQKKVLLIIDDVADVEQLQSLAGKRDWFGPGSR-ILITTRDKQ 173 (1170)
Q Consensus 131 L~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsr-IIiTTR~~~ 173 (1170)
|+.++=.+|+|.+...+.++.+... . .|.. ++.|+....
T Consensus 215 Lr~~pd~ii~gE~r~~e~~~~l~a~-~---~g~~~~i~T~Ha~~ 254 (308)
T TIGR02788 215 LRMRPDRIILGELRGDEAFDFIRAV-N---TGHPGSITTLHAGS 254 (308)
T ss_pred hcCCCCeEEEeccCCHHHHHHHHHH-h---cCCCeEEEEEeCCC
Confidence 8888889999999987766544332 1 2332 466665544
No 383
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.08 E-value=0.12 Score=62.10 Aligned_cols=52 Identities=21% Similarity=0.227 Sum_probs=40.7
Q ss_pred hhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 35 SRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 35 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
.-+.+|.++|..+-..-.++.|.|.+|+||||||.+++.....+-+.++++.
T Consensus 247 tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 247 SGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred CChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4456777888766566689999999999999999999987655555566665
No 384
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.04 E-value=0.043 Score=56.24 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=23.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
...|.|+|++|+||||+|+.+++.+.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998763
No 385
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=93.96 E-value=0.13 Score=63.92 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYD 73 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~ 73 (1170)
..|+|+|..|.|||||||.+..
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 6799999999999999999864
No 386
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.94 E-value=0.11 Score=58.48 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.8
Q ss_pred EEEEeCCCccHHHHHHHHHhhhc
Q 045458 54 IGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 54 i~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
+++.|++|.||||+|+.+.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999998765
No 387
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.91 E-value=0.052 Score=57.42 Aligned_cols=28 Identities=43% Similarity=0.659 Sum_probs=24.4
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 49 SDVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 49 ~~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
+...+|+|.|.+|+||||||+.+...+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3458999999999999999999987654
No 388
>PRK14528 adenylate kinase; Provisional
Probab=93.91 E-value=0.19 Score=52.14 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
+.|.|.|++|.||||+|+.+...+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999998765
No 389
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.90 E-value=0.1 Score=59.78 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=38.7
Q ss_pred CccccchhhHHHHHHHHcCC------------CCCeEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 28 KELVGIESRLEKIRFLMGTG------------SSDVRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 28 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
..+||.+...+.+.-++... .-..+-|.++|++|+|||++|++++......
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~ 74 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 74 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 47899998888886555431 1124678999999999999999999876543
No 390
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=93.88 E-value=0.13 Score=59.03 Aligned_cols=22 Identities=45% Similarity=0.726 Sum_probs=20.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYD 73 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~ 73 (1170)
..++|.|+.|.||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 5799999999999999999874
No 391
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.87 E-value=0.079 Score=66.91 Aligned_cols=181 Identities=15% Similarity=0.164 Sum_probs=86.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhh-hccccCceeEEEe--------cchhhccCCcHHHHHHHHHHHHhhcCCCccccch
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDS-MSYEFDGSSFLAD--------VREKSEKEGSVISLQKQLLSNLLKLGDISIWHVE 121 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~-~~~~f~~~~~~~~--------~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~ 121 (1170)
.++++|+|+.|.||||+.+.+.-. +..+- ++++.. .......-+. . +.+...+ ....
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~l~aq~--G~~Vpa~~~~~~~~~d~i~~~i~~-~---~si~~~L--------StfS 387 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLALMFQS--GIPIPANEHSEIPYFEEIFADIGD-E---QSIEQNL--------STFS 387 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHHHHHHh--CCCccCCccccccchhheeeecCh-H---hHHhhhh--------hHHH
Confidence 478999999999999999998754 11111 111110 0000000011 0 1111111 0111
Q ss_pred hhHHHHHHhhC--CCeEEEEEeCCCC---HHHHHH----hhcCcCCCCCCcEEEEEeCCchhhhhhCC-CCccEEECCCC
Q 045458 122 DGINIIGSRLR--QKKVLLIIDDVAD---VEQLQS----LAGKRDWFGPGSRILITTRDKQLLVAHEV-DEEHILNLDVL 191 (1170)
Q Consensus 122 ~~~~~i~~~L~--~k~~LlVLDdv~~---~~~l~~----l~~~~~~~~~gsrIIiTTR~~~v~~~~~~-~~~~~~~l~~L 191 (1170)
.....+...+. ..+-|+++|.... ...-.. +...+. ..|+.+|+||....+...... .....+.+ .+
T Consensus 388 ~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~-~~ 464 (771)
T TIGR01069 388 GHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASV-LF 464 (771)
T ss_pred HHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEE-EE
Confidence 12222333333 4788999999843 222222 222221 357899999999876332211 11111111 11
Q ss_pred ChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHHHHhhcCCCHHHHHHHHHHhh
Q 045458 192 NNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVLGSFLIGRTADLWRSALERLK 255 (1170)
Q Consensus 192 ~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L~~~~~~~w~~~l~~l~ 255 (1170)
+.+ ... +..+. ....+.. .-|-+|++++ |+|-.+..-|..+.+....+++..++++.
T Consensus 465 d~~-~l~-p~Ykl-~~G~~g~---S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~ 521 (771)
T TIGR01069 465 DEE-TLS-PTYKL-LKGIPGE---SYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLS 521 (771)
T ss_pred cCC-CCc-eEEEE-CCCCCCC---cHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 111 100 11111 1112221 2355666665 89988888888777665566666666654
No 392
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=93.85 E-value=0.98 Score=48.95 Aligned_cols=122 Identities=18% Similarity=0.232 Sum_probs=73.7
Q ss_pred cCCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHH
Q 045458 22 TEPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISL 101 (1170)
Q Consensus 22 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 101 (1170)
.++...+.|+|-.... ++..++......-+.+.++|+.|+|||+-++.+++... ..|+.. .++.... ..+
T Consensus 66 ~~~~~~~~~l~tkt~r-~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~p-----~~~l~~---~~p~~~a-~~~ 135 (297)
T COG2842 66 ALEKLAPDFLETKTVR-RIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSNP-----NALLIE---ADPSYTA-LVL 135 (297)
T ss_pred ccccccccccccchhH-hHhhhhhhhhhcCceEEEeccccchhHHHHHhhcccCc-----cceeec---CChhhHH-HHH
Confidence 4555678899876543 33344443333335889999999999999999987543 233331 1222212 334
Q ss_pred HHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH--HHHHHhhcCc
Q 045458 102 QKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV--EQLQSLAGKR 156 (1170)
Q Consensus 102 ~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~ 156 (1170)
+..+...... .......+....+..++++..-+++.|..+.. ..++.+....
T Consensus 136 i~~i~~~~~~---~~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~ 189 (297)
T COG2842 136 ILIICAAAFG---ATDGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIH 189 (297)
T ss_pred HHHHHHHHhc---ccchhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHH
Confidence 4444444332 22334566677777888888889999998764 3455554433
No 393
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.84 E-value=0.21 Score=51.11 Aligned_cols=25 Identities=32% Similarity=0.604 Sum_probs=22.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
-.+++|.|..|.|||||++.++...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999998754
No 394
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=93.83 E-value=0.1 Score=57.02 Aligned_cols=37 Identities=27% Similarity=0.331 Sum_probs=27.5
Q ss_pred HHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhh
Q 045458 38 EKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDS 74 (1170)
Q Consensus 38 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~ 74 (1170)
+.|.++|..+-..-.+.=|+|.+|+|||.|+..++-.
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~ 61 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVN 61 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHH
Confidence 4566677543333468899999999999999888753
No 395
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=93.83 E-value=0.29 Score=50.83 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=19.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYD 73 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~ 73 (1170)
--|+|.|.+|+|||+|+..+..
T Consensus 7 ~KivviG~~~vGKTsll~~~~~ 28 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQD 28 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3467999999999999999886
No 396
>PRK14529 adenylate kinase; Provisional
Probab=93.81 E-value=0.25 Score=52.37 Aligned_cols=91 Identities=22% Similarity=0.148 Sum_probs=47.1
Q ss_pred EEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCC
Q 045458 54 IGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQ 133 (1170)
Q Consensus 54 i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~ 133 (1170)
|.|.|++|+||||+|+.++.++.-. ...--..+++............++++. . ......+-....+.+++.+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~--~is~gdllr~~i~~~t~lg~~i~~~i~----~--G~lvpdei~~~lv~~~l~~ 74 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLA--HIESGAIFREHIGGGTELGKKAKEYID----R--GDLVPDDITIPMILETLKQ 74 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC--CcccchhhhhhccCCChHHHHHHHHHh----c--cCcchHHHHHHHHHHHHhc
Confidence 7889999999999999999876422 111111112211111111111222221 1 1122233345566677643
Q ss_pred C-eEEEEEeCC-CCHHHHHHh
Q 045458 134 K-KVLLIIDDV-ADVEQLQSL 152 (1170)
Q Consensus 134 k-~~LlVLDdv-~~~~~l~~l 152 (1170)
. .-=+|||+. .+.+|.+.+
T Consensus 75 ~~~~g~iLDGfPRt~~Qa~~l 95 (223)
T PRK14529 75 DGKNGWLLDGFPRNKVQAEKL 95 (223)
T ss_pred cCCCcEEEeCCCCCHHHHHHH
Confidence 1 345899998 566665554
No 397
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.80 E-value=0.44 Score=52.81 Aligned_cols=37 Identities=19% Similarity=0.074 Sum_probs=28.0
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhccc-cCceeEEE
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMSYE-FDGSSFLA 86 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 86 (1170)
.-.++.|.|.+|+||||+|.+++.....+ -..++|+.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 34688999999999999999998776444 33455654
No 398
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=93.80 E-value=0.11 Score=63.14 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=42.1
Q ss_pred ccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 26 TIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 26 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
....++|....++++.+.+..-...-.-|.|+|..|+|||++|+.+...-.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 456899999999988887766554556788999999999999999998643
No 399
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.79 E-value=0.15 Score=58.43 Aligned_cols=102 Identities=24% Similarity=0.370 Sum_probs=59.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHH
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGS 129 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~ 129 (1170)
.++=+-|||..|.|||.|.-.+|+.+..+-..++-+ .....++-+.+.... ...+.+..+.+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HF-------------h~Fm~~vh~~l~~~~-----~~~~~l~~va~ 122 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHF-------------HEFMLDVHSRLHQLR-----GQDDPLPQVAD 122 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccccccc-------------cHHHHHHHHHHHHHh-----CCCccHHHHHH
Confidence 467789999999999999999998764321111111 122233333332111 22345566777
Q ss_pred hhCCCeEEEEEeCC--CCHHH---HHHhhcCcCCCCCCcEEEEEeCC
Q 045458 130 RLRQKKVLLIIDDV--ADVEQ---LQSLAGKRDWFGPGSRILITTRD 171 (1170)
Q Consensus 130 ~L~~k~~LlVLDdv--~~~~~---l~~l~~~~~~~~~gsrIIiTTR~ 171 (1170)
.+.++..||.+|.+ .+..+ +..+...+ +..|..+|.||..
T Consensus 123 ~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l--~~~gvvlVaTSN~ 167 (362)
T PF03969_consen 123 ELAKESRLLCFDEFQVTDIADAMILKRLFEAL--FKRGVVLVATSNR 167 (362)
T ss_pred HHHhcCCEEEEeeeeccchhHHHHHHHHHHHH--HHCCCEEEecCCC
Confidence 77788889999985 34333 44444332 2456655555543
No 400
>PRK06547 hypothetical protein; Provisional
Probab=93.77 E-value=0.058 Score=54.90 Aligned_cols=27 Identities=33% Similarity=0.313 Sum_probs=24.1
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 49 SDVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 49 ~~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
....+|+|.|.+|.||||+|+.+.+..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 557899999999999999999998864
No 401
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.76 E-value=0.05 Score=55.69 Aligned_cols=26 Identities=38% Similarity=0.505 Sum_probs=23.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 36899999999999999999999876
No 402
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.76 E-value=0.18 Score=53.46 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.9
Q ss_pred EEEEeCCCccHHHHHHHHHhhh
Q 045458 54 IGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 54 i~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
|.|.|++|+||||+|+.++.++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999999998754
No 403
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=93.76 E-value=0.082 Score=56.89 Aligned_cols=30 Identities=30% Similarity=0.442 Sum_probs=26.4
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 49 SDVRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 49 ~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
+...+|+|.|..|.|||||++.+...++..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 567899999999999999999999877654
No 404
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.74 E-value=0.27 Score=61.13 Aligned_cols=79 Identities=20% Similarity=0.180 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhhcc----cCCCc--cCccccchhhHHHHHHHHc-CCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccC
Q 045458 8 FIEEIVNVISSKIH----TEPET--IKELVGIESRLEKIRFLMG-TGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFD 80 (1170)
Q Consensus 8 ~i~~i~~~i~~~l~----~~~~~--~~~~vGr~~~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~ 80 (1170)
-+++.+.+|-++.. ..... .....-...-...|..+|. .+-..-+++-|+|.+|+||||||..++......-.
T Consensus 10 ~~~~~~~~~~~~~g~~~~~~l~~~~~~~v~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~ 89 (790)
T PRK09519 10 ALELAVAQIEKSYGKGSVMRLGDEARQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGG 89 (790)
T ss_pred HHHHHHHHHHHHhccchhcccccccccCCceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 46777777777764 11111 1222233455667778886 34455689999999999999999887765544445
Q ss_pred ceeEEE
Q 045458 81 GSSFLA 86 (1170)
Q Consensus 81 ~~~~~~ 86 (1170)
.++|+.
T Consensus 90 ~v~yId 95 (790)
T PRK09519 90 VAAFID 95 (790)
T ss_pred cEEEEC
Confidence 567765
No 405
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.74 E-value=0.27 Score=58.12 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=23.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
.++|+|+|.+|+||||++..++..+..+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4799999999999999999988765443
No 406
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.69 E-value=0.055 Score=56.22 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=23.3
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
++++|+|.|++|+||||+|+.++..+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998764
No 407
>PRK15115 response regulator GlrR; Provisional
Probab=93.65 E-value=0.89 Score=54.48 Aligned_cols=48 Identities=17% Similarity=0.143 Sum_probs=34.7
Q ss_pred CccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 28 KELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 28 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
..++|....+.++.+........-..|.|.|.+|.|||++|+.+.+.-
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s 181 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNAS 181 (444)
T ss_pred hcccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhc
Confidence 458888877776655443322333457799999999999999998753
No 408
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.61 E-value=0.2 Score=56.01 Aligned_cols=60 Identities=30% Similarity=0.254 Sum_probs=40.8
Q ss_pred CccCccccchhhHHH---HHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeE
Q 045458 25 ETIKELVGIESRLEK---IRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSF 84 (1170)
Q Consensus 25 ~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~ 84 (1170)
...+.+||.....+. +.+++..+.-.-|.|.|.|++|.|||+||..+++.+....+.+..
T Consensus 21 ~~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~i 83 (398)
T PF06068_consen 21 YIADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSI 83 (398)
T ss_dssp SEETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEE
T ss_pred eccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEc
Confidence 346789998765553 345665543234889999999999999999999999877664443
No 409
>PRK14526 adenylate kinase; Provisional
Probab=93.60 E-value=0.26 Score=52.06 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=19.7
Q ss_pred EEEEeCCCccHHHHHHHHHhhh
Q 045458 54 IGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 54 i~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
|+|.|++|+||||+|+.++..+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998754
No 410
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.59 E-value=0.52 Score=58.56 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=22.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
.++|+++|+.|+||||.+..++..+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 47999999999999999999887653
No 411
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=93.58 E-value=2.9 Score=46.19 Aligned_cols=67 Identities=21% Similarity=0.245 Sum_probs=42.2
Q ss_pred CCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCCch-hhhhhCCCCccEEECCCCChHHHHHHHH
Q 045458 133 QKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRDKQ-LLVAHEVDEEHILNLDVLNNDEALQLFS 201 (1170)
Q Consensus 133 ~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~ 201 (1170)
+++=++|+||++.. .....++..+..-++++.+|++|.+.. ++.. -....+.+.+.. +.++..+.+.
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpT-I~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPT-IKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchH-HHHcceeeeCCC-cHHHHHHHHH
Confidence 45568899999865 446666665555466777787776654 3332 233334777866 6666666665
No 412
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=93.56 E-value=0.032 Score=57.80 Aligned_cols=21 Identities=33% Similarity=0.139 Sum_probs=18.9
Q ss_pred EEEEEeCCCccHHHHHHHHHh
Q 045458 53 MIGIWGMGGLGKTTLARVVYD 73 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~ 73 (1170)
++.|+|..|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999883
No 413
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.55 E-value=0.37 Score=50.30 Aligned_cols=22 Identities=32% Similarity=0.292 Sum_probs=20.2
Q ss_pred EEEEeCCCccHHHHHHHHHhhh
Q 045458 54 IGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 54 i~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
|+|.|++|+||||+|+.+++++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998864
No 414
>PRK13947 shikimate kinase; Provisional
Probab=93.55 E-value=0.054 Score=55.32 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=22.1
Q ss_pred EEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
.|+|.|++|+||||+|+.+++++..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999987643
No 415
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.55 E-value=0.51 Score=57.40 Aligned_cols=51 Identities=16% Similarity=0.091 Sum_probs=37.8
Q ss_pred CCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhh
Q 045458 24 PETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDS 74 (1170)
Q Consensus 24 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~ 74 (1170)
....+.++|....+.++.+.+..-+..-.-|.|+|..|+||+++|+++...
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 344568999998888777665432222244789999999999999998764
No 416
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.51 E-value=0.42 Score=51.80 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.0
Q ss_pred EEEEEeCCCccHHHHHHHHHhhh
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
+..|+|++|+|||+||..++-.+
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999998754
No 417
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.51 E-value=0.26 Score=58.96 Aligned_cols=99 Identities=21% Similarity=0.136 Sum_probs=58.4
Q ss_pred HHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCc
Q 045458 37 LEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDIS 116 (1170)
Q Consensus 37 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~ 116 (1170)
++.+..++.. ...+|.|+|+.|.||||+...+.+.+...-...+-+.+-.+..- .+. . |.++ . ..
T Consensus 231 ~~~l~~~~~~---~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~-~~~-~--q~~v----~--~~-- 295 (486)
T TIGR02533 231 LSRFERLIRR---PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQI-EGI-G--QIQV----N--PK-- 295 (486)
T ss_pred HHHHHHHHhc---CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeec-CCC-c--eEEE----c--cc--
Confidence 3455555543 23589999999999999999888776433222333333222111 111 0 0000 0 00
Q ss_pred cccchhhHHHHHHhhCCCeEEEEEeCCCCHHHHHHh
Q 045458 117 IWHVEDGINIIGSRLRQKKVLLIIDDVADVEQLQSL 152 (1170)
Q Consensus 117 ~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~~l~~l 152 (1170)
.-..-...++..|+..+=.|++.++.+.+..+..
T Consensus 296 --~g~~f~~~lr~~LR~dPDvI~vGEiRd~eta~~a 329 (486)
T TIGR02533 296 --IGLTFAAGLRAILRQDPDIIMVGEIRDLETAQIA 329 (486)
T ss_pred --cCccHHHHHHHHHhcCCCEEEEeCCCCHHHHHHH
Confidence 0113456788889999999999999998865443
No 418
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.48 E-value=0.074 Score=53.88 Aligned_cols=24 Identities=42% Similarity=0.491 Sum_probs=20.7
Q ss_pred EEEEeCCCccHHHHHHHHHhhhcc
Q 045458 54 IGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 54 i~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
|.|+|.+|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999988754
No 419
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=93.47 E-value=0.56 Score=60.47 Aligned_cols=227 Identities=18% Similarity=0.159 Sum_probs=109.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccc----cCceeEEEecchhhccCCcHH--HHHHHHHHHHhhcCCCccccchhhHH
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYE----FDGSSFLADVREKSEKEGSVI--SLQKQLLSNLLKLGDISIWHVEDGIN 125 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~----f~~~~~~~~~~~~~~~~~~~~--~l~~~ll~~l~~~~~~~~~~~~~~~~ 125 (1170)
.-+.|+|.+|.||||....++-..... -+..+++. +........... .+...+...+.... .......
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~-l~~~~~~~~~~~q~~~~~~l~~~~~~~~-----~~~~~~~ 296 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLL-LNAFALARKFEKQLSLIDYLAEELFSQG-----IAKQLIE 296 (824)
T ss_pred hheeeecCCCCCceehHHHHHHHhccCcCCcccCceeee-chhHHHhhhhHhhccHHHHHHHHHhccC-----CcchhhH
Confidence 367899999999999999888643222 12223322 221111110001 22222332222111 1112222
Q ss_pred HHHHhhCCCeEEEEEeCCCCHHH------HHHhhcCcCCCCCCcEEEEEeCCchhhhhhCCCCccEEECCCCChHHHHHH
Q 045458 126 IIGSRLRQKKVLLIIDDVADVEQ------LQSLAGKRDWFGPGSRILITTRDKQLLVAHEVDEEHILNLDVLNNDEALQL 199 (1170)
Q Consensus 126 ~i~~~L~~k~~LlVLDdv~~~~~------l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~L 199 (1170)
...+.+...++++.+|++|.... ...+-...++ -+.+++|+|+|....-..... ...+++..+.++.-.+.
T Consensus 297 ~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~-~~~~~~iltcR~~~~~~~~~~--f~~~ei~~~~~~~i~~~ 373 (824)
T COG5635 297 AHQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE-YPDAQVLLTCRPDTYKEEFKG--FAVFEIYKFLDLQINQF 373 (824)
T ss_pred HHHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh-ccCCeEEEEeccchhhhhhhh--hhhccchhhhHHHHHHH
Confidence 22577888999999999986532 2221111111 358899999988654322211 12456666665544322
Q ss_pred HH-----Hhh---cCCCCCC--hhhHHH---HHHHHHHhCCCchHHHHHHHhhc------CCCHHHHHHHHHHhhcCCCc
Q 045458 200 FS-----MKA---FKTHQPV--GEYVEL---SERVLEYAGGLPLALKVLGSFLI------GRTADLWRSALERLKRDPSY 260 (1170)
Q Consensus 200 f~-----~~a---~~~~~~~--~~~~~~---~~~i~~~~~GlPLal~~l~~~L~------~~~~~~w~~~l~~l~~~~~~ 260 (1170)
.. ... ++..... .....+ ..+.++.....|+++.+.+..-. ....+-++.+++.+-...+.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~~~d~ 453 (824)
T COG5635 374 ILYQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLGREDE 453 (824)
T ss_pred HHHHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHhccch
Confidence 22 111 1111111 011111 12344455788999988874322 23455666666665443332
Q ss_pred hHHHHHHhhccCCCh-hhhh-Hhhhhccc
Q 045458 261 KIMSILQISFDGLQG-SEKK-IFLDVACF 287 (1170)
Q Consensus 261 ~i~~~l~~sy~~L~~-~~k~-~fl~~a~f 287 (1170)
.-.......|+.+.. +..+ .+..+|.+
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~l~~~la~~ 482 (824)
T COG5635 454 TRGIKWSKTYAKLTTDQQDKWLLQLLAAL 482 (824)
T ss_pred hhhhcchhhhcccchHHHHHHHHHHHHHH
Confidence 222223444554433 3344 55555543
No 420
>PLN02200 adenylate kinase family protein
Probab=93.46 E-value=0.27 Score=52.91 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=22.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
.+.+|+|.|++|+||||+|+.+++.+
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998754
No 421
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=93.46 E-value=0.46 Score=58.19 Aligned_cols=26 Identities=27% Similarity=0.164 Sum_probs=22.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
++..|.|.+|.||||++..+...+..
T Consensus 161 ~~~vitGgpGTGKTt~v~~ll~~l~~ 186 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVARLLLALVK 186 (586)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 68899999999999999998876543
No 422
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=93.45 E-value=1.1 Score=56.31 Aligned_cols=50 Identities=14% Similarity=0.226 Sum_probs=38.4
Q ss_pred ccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 26 TIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 26 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
..+.++|....+.++.+.+........-|.|+|..|+||+++|+.+.+.-
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 34679999988888777665433333447899999999999999998753
No 423
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.42 E-value=0.24 Score=52.06 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDS 74 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~ 74 (1170)
-.+++|.|..|.|||||++.++..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999875
No 424
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=93.38 E-value=0.094 Score=53.34 Aligned_cols=41 Identities=24% Similarity=0.153 Sum_probs=29.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhc-cccCceeEEEecchhh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMS-YEFDGSSFLADVREKS 92 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~~~~~~~ 92 (1170)
..++.+.|+.|+|||.||+++++.+. ......+- .+..+..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~-~d~s~~~ 44 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIR-IDMSEYS 44 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEE-EEGGGHC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHH-Hhhhccc
Confidence 46788999999999999999999876 44333333 3344433
No 425
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=93.36 E-value=0.31 Score=54.88 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=32.0
Q ss_pred chhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhh
Q 045458 33 IESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDS 74 (1170)
Q Consensus 33 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~ 74 (1170)
...-.+.|..+|..+-....++.|+|.+|+|||||+..++..
T Consensus 78 ~~tg~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~ 119 (316)
T TIGR02239 78 LTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVT 119 (316)
T ss_pred eCCCCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHH
Confidence 334455677777655455689999999999999999988753
No 426
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.36 E-value=0.066 Score=54.93 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=22.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
++|.+.|++|.||||+|+++.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999987653
No 427
>PTZ00035 Rad51 protein; Provisional
Probab=93.34 E-value=0.3 Score=55.58 Aligned_cols=40 Identities=20% Similarity=0.271 Sum_probs=30.8
Q ss_pred hHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 36 RLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 36 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
-...|.++|..+-..-.++.|+|.+|.|||||+..++-..
T Consensus 103 G~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~ 142 (337)
T PTZ00035 103 GSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTC 142 (337)
T ss_pred CcHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHh
Confidence 3456667776554556899999999999999999887543
No 428
>PRK14531 adenylate kinase; Provisional
Probab=93.33 E-value=0.32 Score=50.25 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=21.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
+.|.|.|++|.||||+|+.+++.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998875
No 429
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=93.33 E-value=0.22 Score=60.69 Aligned_cols=55 Identities=18% Similarity=0.136 Sum_probs=39.3
Q ss_pred cchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccc-cCceeEEE
Q 045458 32 GIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE-FDGSSFLA 86 (1170)
Q Consensus 32 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 86 (1170)
+...-+..|.+++..+-..-+++.|.|.+|+|||++|.+++.....+ -+.+.|+.
T Consensus 12 ri~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis 67 (509)
T PRK09302 12 KLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVT 67 (509)
T ss_pred cccCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 33444556667776554556899999999999999999987755444 34566665
No 430
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.32 E-value=0.49 Score=52.50 Aligned_cols=53 Identities=23% Similarity=0.288 Sum_probs=40.0
Q ss_pred CccccchhhHHHHHHHHcCC------------CCCeEEEEEEeCCCccHHHHHHHHHhhhccccC
Q 045458 28 KELVGIESRLEKIRFLMGTG------------SSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFD 80 (1170)
Q Consensus 28 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~ 80 (1170)
.++-|.+...+++.++.... ....+-|.++|++|.|||.||++++.+....|-
T Consensus 92 ~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fI 156 (386)
T KOG0737|consen 92 DDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFI 156 (386)
T ss_pred hhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcc
Confidence 56778888888887654321 123567899999999999999999998766654
No 431
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.29 E-value=0.12 Score=56.78 Aligned_cols=38 Identities=16% Similarity=0.189 Sum_probs=29.5
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 49 SDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 49 ~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
..-.++.|+|.+|+|||++|.+++.....+-+.++|+.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34589999999999999999998765444445567766
No 432
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.27 E-value=0.23 Score=54.45 Aligned_cols=58 Identities=29% Similarity=0.217 Sum_probs=43.7
Q ss_pred CCCccCccccchhhHH---HHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccC
Q 045458 23 EPETIKELVGIESRLE---KIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFD 80 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~---~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~ 80 (1170)
+-...+.+||.....+ -+.+++..+.-.-+.|.|.|++|.|||+||-.+.+.+...-+
T Consensus 34 ~k~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvP 94 (450)
T COG1224 34 AKFIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVP 94 (450)
T ss_pred EeEcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCC
Confidence 3345678999765544 345666665444588999999999999999999998876544
No 433
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.25 E-value=0.46 Score=53.36 Aligned_cols=89 Identities=27% Similarity=0.252 Sum_probs=54.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhcccc--CceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHH
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYEF--DGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGS 129 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~ 129 (1170)
..|.|.|..|.||||+++++...+.... +..+-+.+..+..-....... +. ..+.....+.++.
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~--------l~------~~~~~~~~~lv~~ 210 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVA--------LH------TSDTVDMARLLKS 210 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEE--------ec------cCCCcCHHHHHHH
Confidence 4578999999999999999988764222 222333333332111110000 00 0112245567888
Q ss_pred hhCCCeEEEEEeCCCCHHHHHHhhc
Q 045458 130 RLRQKKVLLIIDDVADVEQLQSLAG 154 (1170)
Q Consensus 130 ~L~~k~~LlVLDdv~~~~~l~~l~~ 154 (1170)
.|+.++=.||+..+...+.++.+..
T Consensus 211 aLR~~PD~IivGEiRg~ea~~~l~a 235 (323)
T PRK13833 211 TMRLRPDRIIVGEVRDGAALTLLKA 235 (323)
T ss_pred HhCCCCCEEEEeecCCHHHHHHHHH
Confidence 9999999999999988877665543
No 434
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.25 E-value=0.1 Score=57.50 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=21.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
+-|.++|+.|+|||++++.......
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~ 58 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLD 58 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCST
T ss_pred CcEEEECCCCCchhHHHHhhhccCC
Confidence 5668999999999999999887543
No 435
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.23 E-value=0.088 Score=54.12 Aligned_cols=26 Identities=35% Similarity=0.586 Sum_probs=22.7
Q ss_pred EEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
+|+|.|.+|.||||+|+.+...+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999876543
No 436
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.16 E-value=1.7 Score=52.30 Aligned_cols=150 Identities=20% Similarity=0.269 Sum_probs=81.4
Q ss_pred CccccchhhHHHHHHHHcCCC-----------CCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCC
Q 045458 28 KELVGIESRLEKIRFLMGTGS-----------SDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEG 96 (1170)
Q Consensus 28 ~~~vGr~~~~~~l~~~L~~~~-----------~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 96 (1170)
+++-|+....+.+++.+.-.+ ....-|.++|++|.|||-||.+++....-+ |+. +..
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~-----fis-vKG------ 734 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLR-----FIS-VKG------ 734 (952)
T ss_pred eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCee-----EEE-ecC------
Confidence 346677766666666654321 123458899999999999999998765433 343 211
Q ss_pred cHHHHHHHHHHHHhhcCCCccccchhhH-HHHHHhhCCCeEEEEEeCCCCHH-------------HHHHhhcCcCC--CC
Q 045458 97 SVISLQKQLLSNLLKLGDISIWHVEDGI-NIIGSRLRQKKVLLIIDDVADVE-------------QLQSLAGKRDW--FG 160 (1170)
Q Consensus 97 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~-~~i~~~L~~k~~LlVLDdv~~~~-------------~l~~l~~~~~~--~~ 160 (1170)
- +++....+ ..++.. +.+.+.-.-+++.+.+|.+|... -...++..++. .-
T Consensus 735 --P----ElL~KyIG-------aSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl 801 (952)
T KOG0735|consen 735 --P----ELLSKYIG-------ASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGL 801 (952)
T ss_pred --H----HHHHHHhc-------ccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccccc
Confidence 1 12222221 112222 33334445699999999986542 13334333321 12
Q ss_pred CCcEEEEEe-CCchhhhhh----CCCCccEEECCCCChHHHHHHHHHhh
Q 045458 161 PGSRILITT-RDKQLLVAH----EVDEEHILNLDVLNNDEALQLFSMKA 204 (1170)
Q Consensus 161 ~gsrIIiTT-R~~~v~~~~----~~~~~~~~~l~~L~~~ea~~Lf~~~a 204 (1170)
.|.-|+-.| |..-+..+. ..+. .+.-+.-++.|.++.|...+
T Consensus 802 ~GV~i~aaTsRpdliDpALLRpGRlD~--~v~C~~P~~~eRl~il~~ls 848 (952)
T KOG0735|consen 802 DGVYILAATSRPDLIDPALLRPGRLDK--LVYCPLPDEPERLEILQVLS 848 (952)
T ss_pred ceEEEEEecCCccccCHhhcCCCccce--eeeCCCCCcHHHHHHHHHHh
Confidence 466666544 443322221 1222 44455556677777776554
No 437
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=93.15 E-value=0.56 Score=53.23 Aligned_cols=42 Identities=19% Similarity=0.255 Sum_probs=31.5
Q ss_pred chhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhh
Q 045458 33 IESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDS 74 (1170)
Q Consensus 33 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~ 74 (1170)
...-...|..+|..+-....++-|+|.+|+|||++|..++-.
T Consensus 105 i~tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~ 146 (342)
T PLN03186 105 ITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVT 146 (342)
T ss_pred eCCCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHH
Confidence 334455677777654455688999999999999999887753
No 438
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.11 E-value=0.21 Score=60.01 Aligned_cols=128 Identities=20% Similarity=0.216 Sum_probs=0.0
Q ss_pred EEEEEeCCCccHHHHHHHHHhh----------------------hccccCceeEEEecchhhccCCcHHHHHHHHHHHHh
Q 045458 53 MIGIWGMGGLGKTTLARVVYDS----------------------MSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLL 110 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~----------------------~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 110 (1170)
.|+|+|+.|+|||||.+.+... ...-++....+..+++...... .......+.+++
T Consensus 350 riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~--e~~~r~~L~~f~ 427 (530)
T COG0488 350 RIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGD--EQEVRAYLGRFG 427 (530)
T ss_pred EEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCcccc--HHHHHHHHHHcC
Q ss_pred hcCCCc------cccchhhHHHHHHhhCCCeEEEEEe------CCCCHHHHHHhhcCcCCCCCCcEEEEEeCCchhhhhh
Q 045458 111 KLGDIS------IWHVEDGINIIGSRLRQKKVLLIID------DVADVEQLQSLAGKRDWFGPGSRILITTRDKQLLVAH 178 (1170)
Q Consensus 111 ~~~~~~------~~~~~~~~~~i~~~L~~k~~LlVLD------dv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~ 178 (1170)
-..+.. ...-+...-.+...+-.++=+|||| |++..+.++.....++ ..||+.|.|+......
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~-----Gtvl~VSHDr~Fl~~v 502 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE-----GTVLLVSHDRYFLDRV 502 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC-----CeEEEEeCCHHHHHhh
Q ss_pred CCCCccEEECCC
Q 045458 179 EVDEEHILNLDV 190 (1170)
Q Consensus 179 ~~~~~~~~~l~~ 190 (1170)
. .. ++.+.+
T Consensus 503 a-~~--i~~~~~ 511 (530)
T COG0488 503 A-TR--IWLVED 511 (530)
T ss_pred c-ce--EEEEcC
No 439
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=93.05 E-value=0.12 Score=59.94 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=21.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDS 74 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~ 74 (1170)
-+..||+|.+|.||||+.+.++.+
T Consensus 101 g~rygLiG~nG~Gkst~L~~i~~~ 124 (614)
T KOG0927|consen 101 GRRYGLIGPNGSGKSTFLRAIAGR 124 (614)
T ss_pred CceEEEEcCCCCcHhHHHHHHhcC
Confidence 367899999999999999999864
No 440
>PRK08506 replicative DNA helicase; Provisional
Probab=93.04 E-value=0.69 Score=55.36 Aligned_cols=72 Identities=21% Similarity=0.256 Sum_probs=43.5
Q ss_pred cccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHH
Q 045458 30 LVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNL 109 (1170)
Q Consensus 30 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 109 (1170)
..|...-...|.+++. +-..-.++.|-|.+|+|||++|..++..+..+-..++|+. . + -....+...+++..
T Consensus 172 ~~Gi~TG~~~LD~~~~-G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fS-l----E--Ms~~ql~~Rlla~~ 243 (472)
T PRK08506 172 IIGLDTGFVELNKMTK-GFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFS-L----E--MPAEQLMLRMLSAK 243 (472)
T ss_pred CCcccCChHHHHhhcC-CCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEe-C----c--CCHHHHHHHHHHHh
Confidence 4455555555555542 2234468999999999999999999887643322344543 1 1 11255555555543
No 441
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=93.04 E-value=0.41 Score=49.41 Aligned_cols=112 Identities=18% Similarity=0.110 Sum_probs=58.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccc---cC-ceeEEEecchhhccC-CcHHHHHHHHHHHHhhcCCCccccchhhHHH
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYE---FD-GSSFLADVREKSEKE-GSVISLQKQLLSNLLKLGDISIWHVEDGINI 126 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~---f~-~~~~~~~~~~~~~~~-~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~ 126 (1170)
.-..|.|++|+|||||.+.+++-++.. |. ..+-+.+ +.++-. ++...-|.++..++. -.+. -....-+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiD--ersEIag~~~gvpq~~~g~R~d---Vld~--cpk~~gm 210 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIID--ERSEIAGCLNGVPQHGRGRRMD---VLDP--CPKAEGM 210 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEe--ccchhhccccCCchhhhhhhhh---hccc--chHHHHH
Confidence 346789999999999999998865443 32 2222221 111111 110111222222221 0011 1111112
Q ss_pred HHHhhCCCeEEEEEeCCCCHHHHHHhhcCcCCCCCCcEEEEEeCCch
Q 045458 127 IGSRLRQKKVLLIIDDVADVEQLQSLAGKRDWFGPGSRILITTRDKQ 173 (1170)
Q Consensus 127 i~~~L~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~ 173 (1170)
+...-...+=++|+|.+...++..++.... ..|.++|.|..-..
T Consensus 211 mmaIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~~ 254 (308)
T COG3854 211 MMAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGNG 254 (308)
T ss_pred HHHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeecccc
Confidence 222223456799999998888766665543 47888887765433
No 442
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.02 E-value=0.12 Score=54.15 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=28.2
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEE
Q 045458 49 SDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFL 85 (1170)
Q Consensus 49 ~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 85 (1170)
....+|+|+|++|.||||||+.+...+...-...+++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 3457999999999999999999998764432234444
No 443
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.01 E-value=0.41 Score=50.93 Aligned_cols=24 Identities=38% Similarity=0.389 Sum_probs=21.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDS 74 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~ 74 (1170)
-.+++|.|..|.|||||++.+...
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 367999999999999999999864
No 444
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=93.00 E-value=0.17 Score=57.22 Aligned_cols=37 Identities=24% Similarity=0.261 Sum_probs=28.1
Q ss_pred HHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHh
Q 045458 37 LEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYD 73 (1170)
Q Consensus 37 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~ 73 (1170)
...|.++|..+-..-.++-|+|.+|+|||+|+.+++-
T Consensus 112 ~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav 148 (344)
T PLN03187 112 SQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCV 148 (344)
T ss_pred cHhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHH
Confidence 3455566664434568888999999999999998864
No 445
>PRK09165 replicative DNA helicase; Provisional
Probab=92.96 E-value=0.54 Score=56.61 Aligned_cols=46 Identities=26% Similarity=0.328 Sum_probs=31.5
Q ss_pred ccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 31 VGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 31 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
.|...-+..|.+++. +-..-.++.|-|.+|+||||+|..++..+..
T Consensus 198 ~gi~TG~~~LD~~~g-G~~~g~livIaarpg~GKT~~al~ia~~~a~ 243 (497)
T PRK09165 198 SGISTGLRDLDSKLG-GLHPSDLIILAGRPSMGKTALATNIAFNAAK 243 (497)
T ss_pred CcccCChHHHhhhcC-CCCCCceEEEEeCCCCChHHHHHHHHHHHHH
Confidence 344444555555543 2234468999999999999999988876543
No 446
>PLN02674 adenylate kinase
Probab=92.95 E-value=0.48 Score=50.90 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=21.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
...|.|.|++|.||||+|+.++.++
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 3557899999999999999998865
No 447
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=92.92 E-value=0.42 Score=49.47 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=23.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
...+|+|.|.+|.||||+|+.+.....
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 347999999999999999999998764
No 448
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=92.92 E-value=0.18 Score=53.01 Aligned_cols=56 Identities=16% Similarity=0.232 Sum_probs=36.5
Q ss_pred hhhHHHHHHhhCCCeEEEEEeCC----C--CHHHHHHhhcCcCCCCCCcEEEEEeCCchhhhh
Q 045458 121 EDGINIIGSRLRQKKVLLIIDDV----A--DVEQLQSLAGKRDWFGPGSRILITTRDKQLLVA 177 (1170)
Q Consensus 121 ~~~~~~i~~~L~~k~~LlVLDdv----~--~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~ 177 (1170)
+...-.|.+.|...+-+|+.|+= | +.+.+-.+..... ...|..||+.|.|..++..
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~-~~~g~tii~VTHd~~lA~~ 208 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN-KERGKTIIMVTHDPELAKY 208 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHH-HhcCCEEEEEcCCHHHHHh
Confidence 34445678889999999999963 3 2233333332221 1357899999999998764
No 449
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.91 E-value=0.092 Score=55.66 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYD 73 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~ 73 (1170)
.++++|+|..|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 450
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.88 E-value=0.5 Score=49.10 Aligned_cols=59 Identities=24% Similarity=0.182 Sum_probs=34.3
Q ss_pred HHHHHHhhCCCeEEEEEeCCCCHHHHHHhh---cCcC-CCCCCcEEEEEeCCchhhhhhCCCC
Q 045458 124 INIIGSRLRQKKVLLIIDDVADVEQLQSLA---GKRD-WFGPGSRILITTRDKQLLVAHEVDE 182 (1170)
Q Consensus 124 ~~~i~~~L~~k~~LlVLDdv~~~~~l~~l~---~~~~-~~~~gsrIIiTTR~~~v~~~~~~~~ 182 (1170)
...|.+.+--++=+.|||..|+--+++++. .... -..+|+.++|.|..+.++.....+.
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~ 214 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDK 214 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCE
Confidence 445555666678899999887643333321 1111 1145777777787777766544333
No 451
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.86 E-value=0.18 Score=55.28 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=29.2
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHhhhccccCcee
Q 045458 49 SDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSS 83 (1170)
Q Consensus 49 ~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~ 83 (1170)
.++.+|.|.|.+|.|||||+..+.+.+.......+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~V 136 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAV 136 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEE
Confidence 56899999999999999999999998776654333
No 452
>PRK05439 pantothenate kinase; Provisional
Probab=92.86 E-value=0.14 Score=57.01 Aligned_cols=29 Identities=34% Similarity=0.371 Sum_probs=25.0
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 49 SDVRMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 49 ~~~~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
+..-+|||.|.+|+||||+|+.+...+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45789999999999999999999886643
No 453
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=92.84 E-value=0.63 Score=48.60 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=22.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
-.+++|.|..|.|||||.+.++...
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998754
No 454
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.82 E-value=0.19 Score=50.46 Aligned_cols=114 Identities=18% Similarity=0.232 Sum_probs=59.7
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRL 131 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L 131 (1170)
.+++|.|..|.|||||++.+...+.. ..+.+++... .... ..... ....+.-.. ....-+...-.+.+.+
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~-~~G~i~~~~~-~~~~--~~~~~----~~~~i~~~~--qlS~G~~~r~~l~~~l 95 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKP-TSGEILIDGK-DIAK--LPLEE----LRRRIGYVP--QLSGGQRQRVALARAL 95 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCE-Eccc--CCHHH----HHhceEEEe--eCCHHHHHHHHHHHHH
Confidence 68999999999999999999876542 3444554421 1100 00011 111110000 0111122223355566
Q ss_pred CCCeEEEEEeCCCC---H---HHHHHhhcCcCCCCCCcEEEEEeCCchhhhh
Q 045458 132 RQKKVLLIIDDVAD---V---EQLQSLAGKRDWFGPGSRILITTRDKQLLVA 177 (1170)
Q Consensus 132 ~~k~~LlVLDdv~~---~---~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~ 177 (1170)
..++-++++|+... . ..+..+..... ..+..+|++|.+......
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELA--EEGRTVIIVTHDPELAEL 145 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHH
Confidence 66778999998742 2 22333222221 235678999888775544
No 455
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.81 E-value=2.3 Score=51.62 Aligned_cols=48 Identities=21% Similarity=0.319 Sum_probs=35.5
Q ss_pred ccchhhHHHHHHHHcCCC-------CCeEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 31 VGIESRLEKIRFLMGTGS-------SDVRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 31 vGr~~~~~~l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
.+++..+.++...+.... .-..++.++|.+|+||||++++++....-+
T Consensus 404 ~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h 458 (953)
T KOG0736|consen 404 PGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLH 458 (953)
T ss_pred ccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCc
Confidence 456666666777776531 134788999999999999999999876543
No 456
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=92.81 E-value=2.8 Score=46.27 Aligned_cols=39 Identities=10% Similarity=-0.085 Sum_probs=29.9
Q ss_pred hHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 36 RLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 36 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
..++|...+..+ .-.....++|+.|+||+++|..++..+
T Consensus 5 ~~~~L~~~i~~~-rl~HAyLf~G~~G~Gk~~lA~~~A~~l 43 (290)
T PRK05917 5 AWEALIQRVRDQ-KVPSAIILHGQDLSNLSARAYELASLI 43 (290)
T ss_pred HHHHHHHHHHcC-CcCeeEeeECCCCCcHHHHHHHHHHHH
Confidence 345667777653 234678899999999999999998865
No 457
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.78 E-value=0.078 Score=52.38 Aligned_cols=20 Identities=40% Similarity=0.704 Sum_probs=18.8
Q ss_pred EEEEEeCCCccHHHHHHHHH
Q 045458 53 MIGIWGMGGLGKTTLARVVY 72 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~ 72 (1170)
.|+|+|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 458
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.75 E-value=0.076 Score=54.65 Aligned_cols=23 Identities=39% Similarity=0.650 Sum_probs=21.2
Q ss_pred EEEEEeCCCccHHHHHHHHHhhh
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
+|+|.|.+|.||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 459
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=92.73 E-value=0.2 Score=52.81 Aligned_cols=26 Identities=35% Similarity=0.590 Sum_probs=22.8
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
..++|.|.+|+|||+|+..+.+....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~ 41 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDA 41 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTT
T ss_pred CEEEEEcCcccccchhhHHHHhcccc
Confidence 56899999999999999999987643
No 460
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=92.73 E-value=0.15 Score=50.41 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=26.5
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHhhhcccc
Q 045458 49 SDVRMIGIWGMGGLGKTTLARVVYDSMSYEF 79 (1170)
Q Consensus 49 ~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f 79 (1170)
.+..+|-++|.+|.||||+|.++++++..+-
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G 51 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKG 51 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcC
Confidence 3457999999999999999999999876653
No 461
>PRK08006 replicative DNA helicase; Provisional
Probab=92.73 E-value=0.82 Score=54.51 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=31.8
Q ss_pred cccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 30 LVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 30 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
..|...-...|.+++. +-..-.+|.|-|.+|+||||+|..++..+.
T Consensus 204 ~~Gi~TG~~~LD~~~~-Gl~~G~LiiIaarPgmGKTafalnia~~~a 249 (471)
T PRK08006 204 VTGVNTGYDDLNKKTA-GLQPSDLIIVAARPSMGKTTFAMNLCENAA 249 (471)
T ss_pred CCcccCCCHHHHHhhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3455555555555442 223447889999999999999999887654
No 462
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.72 E-value=0.0072 Score=63.36 Aligned_cols=96 Identities=22% Similarity=0.247 Sum_probs=63.6
Q ss_pred CCCccEEeecCcccCC-ch-hcccCCceEEEcCCCCCCCCCCCCCCCceeEEEccCCChHHHh--hcCCCCCCCcEEEcC
Q 045458 402 MTNLRLLGICNLKLPE-GL-ECLSNKLRLLDWPGYPLKSLPPNLQLDKTIEFKMLCSRIEELW--KGIKSLNMLKVMKVS 477 (1170)
Q Consensus 402 ~~~Lr~L~l~~~~l~~-~~-~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~s~i~~L~--~~l~~l~~L~~L~Ls 477 (1170)
+.+.+.|++.++.+.+ ++ ..+| .|.+|.|+-|.+++|.+...+.+|++|.|+.|.|..+- .-++++++|++|-|.
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp-~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMP-LLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcc-cceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 3445556666666554 22 3333 57788888888888877778888888888888887663 456788888888887
Q ss_pred CCCCCCcCCC------CCCCCCccEEE
Q 045458 478 YSQSLIKIPD------FTGVPNLEKLY 498 (1170)
Q Consensus 478 ~~~~l~~~~~------~~~l~~L~~L~ 498 (1170)
.|.....-+. +..+|||+.||
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 7764443321 34466666665
No 463
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=92.72 E-value=0.57 Score=49.03 Aligned_cols=23 Identities=30% Similarity=0.195 Sum_probs=21.0
Q ss_pred EEEEEEeCCCccHHHHHHHHHhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDS 74 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~ 74 (1170)
++++|+|+.|.|||||.+.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 79999999999999999998753
No 464
>PRK13948 shikimate kinase; Provisional
Probab=92.68 E-value=0.097 Score=53.73 Aligned_cols=27 Identities=19% Similarity=0.339 Sum_probs=24.0
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
..+.|++.|+.|+||||+++.+.+++.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 457899999999999999999998764
No 465
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.68 E-value=0.043 Score=34.54 Aligned_cols=20 Identities=45% Similarity=0.637 Sum_probs=12.4
Q ss_pred CCCEEECcCCCCcccchhhh
Q 045458 801 SLKVLCLSNNSFVSLPASIS 820 (1170)
Q Consensus 801 sL~~L~Ls~n~l~~lp~~i~ 820 (1170)
+|++|+|++|+++.+|.+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35666666666666665543
No 466
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.68 E-value=0.081 Score=51.72 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=22.1
Q ss_pred EEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
.|+|+|+.|+|||||++.+.+.....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 37899999999999999999865444
No 467
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=92.67 E-value=0.22 Score=58.14 Aligned_cols=93 Identities=22% Similarity=0.251 Sum_probs=49.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCC---ccccc---h---
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDI---SIWHV---E--- 121 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~---~~~~~---~--- 121 (1170)
-+.++|.|.+|+|||||+..++.....+.+..+.+.-+.+ +...+..+.+++...-...... ...+. .
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGE---R~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGE---RTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEecc---CcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 3678999999999999999988766544333333333332 2222234444443321000000 00011 0
Q ss_pred --hhHHHHHHhh---CCCeEEEEEeCCCCH
Q 045458 122 --DGINIIGSRL---RQKKVLLIIDDVADV 146 (1170)
Q Consensus 122 --~~~~~i~~~L---~~k~~LlVLDdv~~~ 146 (1170)
...-.+.+.+ +++++||++||+..-
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 1112244544 679999999999543
No 468
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=92.67 E-value=0.21 Score=57.17 Aligned_cols=94 Identities=17% Similarity=0.183 Sum_probs=54.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhccccCc---eeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHH
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSYEFDG---SSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINII 127 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~---~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i 127 (1170)
-.+|+|+|+.|.||||+++.+...+....+. .+.+.+..+... .+. ... .....+ . .. ..+...-...+
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~-~~~-~~~-~~~v~Q---~-~v-~~~~~~~~~~l 205 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVY-DEI-ETI-SASVCQ---S-EI-PRHLNNFAAGV 205 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEec-ccc-ccc-cceeee---e-ec-cccccCHHHHH
Confidence 3789999999999999999998876543321 223322222110 000 000 000000 0 00 01122345667
Q ss_pred HHhhCCCeEEEEEeCCCCHHHHHHh
Q 045458 128 GSRLRQKKVLLIIDDVADVEQLQSL 152 (1170)
Q Consensus 128 ~~~L~~k~~LlVLDdv~~~~~l~~l 152 (1170)
+..|+..+-.+++..+.+.+..+..
T Consensus 206 ~~aLR~~Pd~i~vGEiRd~et~~~a 230 (358)
T TIGR02524 206 RNALRRKPHAILVGEARDAETISAA 230 (358)
T ss_pred HHHhccCCCEEeeeeeCCHHHHHHH
Confidence 8889999999999999988876543
No 469
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.66 E-value=0.092 Score=51.12 Aligned_cols=26 Identities=38% Similarity=0.588 Sum_probs=22.8
Q ss_pred EEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
+|.|.|.+|.||||+|+.+++...-.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~ 27 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK 27 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc
Confidence 68999999999999999999876543
No 470
>PRK13949 shikimate kinase; Provisional
Probab=92.63 E-value=0.092 Score=53.42 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.7
Q ss_pred EEEEEeCCCccHHHHHHHHHhhhc
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
-|+|.|++|.||||+|+.++..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998764
No 471
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=92.63 E-value=0.096 Score=52.33 Aligned_cols=28 Identities=29% Similarity=0.491 Sum_probs=23.8
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhcccc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYEF 79 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~f 79 (1170)
+-|+++||.|+||||+.+.+++.+.-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 3578999999999999999998776554
No 472
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.61 E-value=0.082 Score=52.67 Aligned_cols=23 Identities=26% Similarity=0.612 Sum_probs=20.3
Q ss_pred EEEEEeCCCccHHHHHHHHHhhh
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
+|.|.|++|+||||+|+.+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998763
No 473
>PRK06217 hypothetical protein; Validated
Probab=92.60 E-value=0.088 Score=54.45 Aligned_cols=24 Identities=33% Similarity=0.464 Sum_probs=21.6
Q ss_pred EEEEEeCCCccHHHHHHHHHhhhc
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
.|+|.|.+|.||||+|+++.+...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998753
No 474
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.56 E-value=0.18 Score=55.45 Aligned_cols=47 Identities=21% Similarity=0.212 Sum_probs=37.8
Q ss_pred HHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 40 IRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 40 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
+.+++..+-+.-+++.|+|.+|+|||++|.++..+.....+.++|+.
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 33445444456689999999999999999999988777778788887
No 475
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.56 E-value=0.27 Score=52.85 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYD 73 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~ 73 (1170)
-.+++|.|+.|+|||||.+.++.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 47899999999999999999985
No 476
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=92.55 E-value=0.2 Score=61.44 Aligned_cols=62 Identities=21% Similarity=0.317 Sum_probs=49.1
Q ss_pred cCCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhcc-ccCceeEEEe
Q 045458 22 TEPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSY-EFDGSSFLAD 87 (1170)
Q Consensus 22 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~ 87 (1170)
.+|...+.++|.+..++.|...+..+ +.+.++|.+|+||||+|+.+.+.+.. .++...|..+
T Consensus 25 ~~~~~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n 87 (637)
T PRK13765 25 VPERLIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN 87 (637)
T ss_pred cCcccHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC
Confidence 55666688999999999888877653 46889999999999999999987643 3466677765
No 477
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.54 E-value=1.6 Score=50.37 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=24.1
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 49 SDVRMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 49 ~~~~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
+-++-+.+.|++|.|||.||++++-+...
T Consensus 184 ~p~rglLLfGPpgtGKtmL~~aiAsE~~a 212 (428)
T KOG0740|consen 184 EPVRGLLLFGPPGTGKTMLAKAIATESGA 212 (428)
T ss_pred cccchhheecCCCCchHHHHHHHHhhhcc
Confidence 34677789999999999999999986553
No 478
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.51 E-value=0.28 Score=53.38 Aligned_cols=25 Identities=36% Similarity=0.676 Sum_probs=22.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
-.+++|.|..|+|||||++.++...
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999998643
No 479
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.50 E-value=0.099 Score=53.86 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
++++|.|+.|+||||+|+.+...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999987653
No 480
>COG4240 Predicted kinase [General function prediction only]
Probab=92.47 E-value=0.44 Score=48.99 Aligned_cols=82 Identities=20% Similarity=0.247 Sum_probs=48.2
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHhhhcccc-CceeEEEecchhhccCCcHHHHHHHHHHH---Hhh-cCCCccccchhh
Q 045458 49 SDVRMIGIWGMGGLGKTTLARVVYDSMSYEF-DGSSFLADVREKSEKEGSVISLQKQLLSN---LLK-LGDISIWHVEDG 123 (1170)
Q Consensus 49 ~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~---l~~-~~~~~~~~~~~~ 123 (1170)
++.-+++|.|+-|.||||+|..++..+.+.. +....++ +.+....+ +-+..++++ +.. ..-....++.-+
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lS-LDDlYlth----adrl~La~q~npllq~RGlpGTHD~tlg 122 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLS-LDDLYLTH----ADRLRLARQVNPLLQTRGLPGTHDPTLG 122 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEee-hhhhhcch----HHHHHHHHhcCchhcccCCCCCCchHHH
Confidence 5578999999999999999999999877665 3334333 33333332 223333333 221 222333445555
Q ss_pred HHHHHHhhCCCe
Q 045458 124 INIIGSRLRQKK 135 (1170)
Q Consensus 124 ~~~i~~~L~~k~ 135 (1170)
.+.+....+++.
T Consensus 123 lnVLnai~~g~~ 134 (300)
T COG4240 123 LNVLNAIARGGP 134 (300)
T ss_pred HHHHHHHhcCCC
Confidence 555555555553
No 481
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.45 E-value=0.17 Score=52.63 Aligned_cols=35 Identities=31% Similarity=0.444 Sum_probs=26.0
Q ss_pred EEEEEeCCCccHHHHHHHHHhhhccccCceeEEEe
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLAD 87 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~ 87 (1170)
.|+|+|-||+||||+|..++.++..+-...+.+.+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVD 36 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVD 36 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEe
Confidence 58999999999999999977665555334455443
No 482
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=92.45 E-value=0.11 Score=52.03 Aligned_cols=45 Identities=22% Similarity=0.287 Sum_probs=30.0
Q ss_pred HHHhhCCCeEEEEEeCCCC------HHHHHHhhcCcCCCCCCcEEEEEeCCch
Q 045458 127 IGSRLRQKKVLLIIDDVAD------VEQLQSLAGKRDWFGPGSRILITTRDKQ 173 (1170)
Q Consensus 127 i~~~L~~k~~LlVLDdv~~------~~~l~~l~~~~~~~~~gsrIIiTTR~~~ 173 (1170)
+.+..-.++-|.|||.... ...+..+....- ..|..||.||..+-
T Consensus 141 lArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~--~~GGiVllttHq~l 191 (209)
T COG4133 141 LARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHA--AQGGIVLLTTHQPL 191 (209)
T ss_pred HHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHh--cCCCEEEEecCCcc
Confidence 4445557888999998743 234555554432 57888999998764
No 483
>PHA02244 ATPase-like protein
Probab=92.45 E-value=0.15 Score=57.38 Aligned_cols=45 Identities=13% Similarity=0.240 Sum_probs=31.4
Q ss_pred CccccchhhHH----HHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 28 KELVGIESRLE----KIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 28 ~~~vGr~~~~~----~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
..++|....+. .+.+++..+ .-|.|+|.+|+|||+||++++....
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~~----~PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNAN----IPVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 44777665554 334444432 3467899999999999999998754
No 484
>PRK02496 adk adenylate kinase; Provisional
Probab=92.44 E-value=0.34 Score=50.09 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=20.6
Q ss_pred EEEEEeCCCccHHHHHHHHHhhh
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
.|+|.|++|.||||+|+.+...+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998765
No 485
>PLN02459 probable adenylate kinase
Probab=92.42 E-value=0.43 Score=51.53 Aligned_cols=94 Identities=23% Similarity=0.193 Sum_probs=48.5
Q ss_pred EEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhC
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLR 132 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~ 132 (1170)
.|.|.|++|.||||+|+.+...+. |....-=.-+|+...... .+-+++-..+. . ....+.+-....+++++.
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~--~~~is~gdllR~ei~~~t---~lg~~i~~~~~-~--G~lVPdeiv~~ll~~~l~ 102 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLG--VPHIATGDLVREEIKSSG---PLGAQLKEIVN-Q--GKLVPDEIIFSLLSKRLE 102 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcEEeCcHHHHHHHhccc---hhHHHHHHHHH-c--CCccCHHHHHHHHHHHHh
Confidence 367789999999999999988653 221111111122111111 11111211121 1 112233344566667664
Q ss_pred C----CeEEEEEeCC-CCHHHHHHhhc
Q 045458 133 Q----KKVLLIIDDV-ADVEQLQSLAG 154 (1170)
Q Consensus 133 ~----k~~LlVLDdv-~~~~~l~~l~~ 154 (1170)
. .+--+|||++ .+.+|.+.+..
T Consensus 103 ~~~~~~~~g~iLDGFPRt~~Qa~~Le~ 129 (261)
T PLN02459 103 AGEEEGESGFILDGFPRTVRQAEILEG 129 (261)
T ss_pred cccccCCceEEEeCCCCCHHHHHHHHh
Confidence 3 2456899998 66777666643
No 486
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.40 E-value=0.18 Score=49.41 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=25.9
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccc-cCceeEEE
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYE-FDGSSFLA 86 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 86 (1170)
++|.|+|..|+|||||++.+.+.+..+ +...++.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 479999999999999999999987644 33333433
No 487
>PRK10436 hypothetical protein; Provisional
Probab=92.40 E-value=0.49 Score=56.02 Aligned_cols=100 Identities=18% Similarity=0.138 Sum_probs=57.8
Q ss_pred hHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCC
Q 045458 36 RLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDI 115 (1170)
Q Consensus 36 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~ 115 (1170)
.++.+.+++.. ...+|.|+|+.|.||||...++.+.+...-...+-+.+--+.. ..+. . |.++
T Consensus 206 ~~~~l~~~~~~---~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~-l~gi-~--Q~~v---------- 268 (462)
T PRK10436 206 QLAQFRQALQQ---PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIP-LAGI-N--QTQI---------- 268 (462)
T ss_pred HHHHHHHHHHh---cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCcccc-CCCc-c--eEee----------
Confidence 34455555543 2368999999999999988877766543312222222211110 0111 0 0000
Q ss_pred ccccchhhHHHHHHhhCCCeEEEEEeCCCCHHHHHHh
Q 045458 116 SIWHVEDGINIIGSRLRQKKVLLIIDDVADVEQLQSL 152 (1170)
Q Consensus 116 ~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~~l~~l 152 (1170)
.......-...++..|+..+=.|++..+.+.+..+..
T Consensus 269 ~~~~g~~f~~~lr~~LR~dPDvI~vGEIRD~eta~~a 305 (462)
T PRK10436 269 HPKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAEIA 305 (462)
T ss_pred CCccCcCHHHHHHHHhcCCCCEEEECCCCCHHHHHHH
Confidence 0011123456788899999999999999988876643
No 488
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=92.39 E-value=0.2 Score=55.85 Aligned_cols=52 Identities=15% Similarity=0.164 Sum_probs=37.6
Q ss_pred CCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhcccc
Q 045458 24 PETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEF 79 (1170)
Q Consensus 24 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f 79 (1170)
|...+.++=..+....+...+..+ +-|.|.|.+|+||||+|+.++..+...|
T Consensus 41 p~~d~~y~f~~~~~~~vl~~l~~~----~~ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 41 PDIDPAYLFDKATTKAICAGFAYD----RRVMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred CCCCCCccCCHHHHHHHHHHHhcC----CcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 334445666655666666666542 4589999999999999999999876543
No 489
>PRK13946 shikimate kinase; Provisional
Probab=92.39 E-value=0.1 Score=54.07 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=22.8
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
+.|++.|++|+||||+|+.+++++.
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999998773
No 490
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.38 E-value=0.1 Score=52.12 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=20.4
Q ss_pred EEEEeCCCccHHHHHHHHHhhh
Q 045458 54 IGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 54 i~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
|.|+|++|.||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998876
No 491
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.36 E-value=0.096 Score=51.82 Aligned_cols=23 Identities=35% Similarity=0.588 Sum_probs=21.1
Q ss_pred EEEEEeCCCccHHHHHHHHHhhh
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
+|.|.|.+|.||||+|+.+..+.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999865
No 492
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.34 E-value=0.13 Score=53.18 Aligned_cols=35 Identities=29% Similarity=0.318 Sum_probs=29.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhccccCceeEE
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFL 85 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 85 (1170)
.|+|+|+|+.|+|||||++.+..+....|...+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceee
Confidence 37899999999999999999999888888544433
No 493
>COG3910 Predicted ATPase [General function prediction only]
Probab=92.33 E-value=0.67 Score=46.46 Aligned_cols=63 Identities=27% Similarity=0.418 Sum_probs=37.9
Q ss_pred HHHHHHhhCCCeEEEEEeCCCC----HHHHHHhhcCcCCCCCCcEEEEEeCCchhhhhhCCCCccEEECCC
Q 045458 124 INIIGSRLRQKKVLLIIDDVAD----VEQLQSLAGKRDWFGPGSRILITTRDKQLLVAHEVDEEHILNLDV 190 (1170)
Q Consensus 124 ~~~i~~~L~~k~~LlVLDdv~~----~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~~~~~~l~~ 190 (1170)
...+.+++.++- +-|||.-+. ..|++-+.....-...|+.|||.|.++-+.. .....+|++..
T Consensus 137 ~~i~~~rf~~~G-iYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlA---iP~A~I~~~~~ 203 (233)
T COG3910 137 LAIFHNRFNGQG-IYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLA---IPGAEIYEISE 203 (233)
T ss_pred HHHHHHHhccCc-eEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhhee---CCCcEEEEEec
Confidence 456667766555 667898643 3565554433333356899999999976433 23333666543
No 494
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=92.33 E-value=0.16 Score=58.12 Aligned_cols=50 Identities=20% Similarity=0.261 Sum_probs=38.4
Q ss_pred CccccchhhHHHHHHHHcC---------CC---CCeEEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 28 KELVGIESRLEKIRFLMGT---------GS---SDVRMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 28 ~~~vGr~~~~~~l~~~L~~---------~~---~~~~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
..++|.+...+.+..++.. +. ...+-|.+.|++|+|||++|+.+...+..
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~ 76 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4689999998888766632 00 11367899999999999999999987643
No 495
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=92.33 E-value=0.09 Score=55.37 Aligned_cols=22 Identities=32% Similarity=0.221 Sum_probs=20.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYD 73 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~ 73 (1170)
.+++|+|..|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 7899999999999999999984
No 496
>PRK13975 thymidylate kinase; Provisional
Probab=92.31 E-value=0.11 Score=54.32 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=23.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
.+|+|.|+.|+||||+|+.+++++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 58999999999999999999998764
No 497
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=92.30 E-value=0.38 Score=54.46 Aligned_cols=39 Identities=21% Similarity=0.360 Sum_probs=30.0
Q ss_pred HHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 38 EKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 38 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
..+..+|..+-..-.++-|+|.+|+|||+++.+++....
T Consensus 82 ~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~ 120 (310)
T TIGR02236 82 KELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQ 120 (310)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 455666664434568899999999999999999986643
No 498
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=92.29 E-value=0.49 Score=49.79 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=19.4
Q ss_pred EEEEEEeCCCccHHHHHHHHH
Q 045458 52 RMIGIWGMGGLGKTTLARVVY 72 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~ 72 (1170)
.+++|.|..|.|||||..+++
T Consensus 23 g~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 23 PLTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 389999999999999999985
No 499
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=92.29 E-value=0.41 Score=60.74 Aligned_cols=113 Identities=19% Similarity=0.231 Sum_probs=57.6
Q ss_pred CCeEEEEEeCCCC---HHH---H-HHhhcCcCCCCCCcEEEEEeCCchhhhhhCCCC-ccEEECCCCChHHHHHHHHHhh
Q 045458 133 QKKVLLIIDDVAD---VEQ---L-QSLAGKRDWFGPGSRILITTRDKQLLVAHEVDE-EHILNLDVLNNDEALQLFSMKA 204 (1170)
Q Consensus 133 ~k~~LlVLDdv~~---~~~---l-~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~~~-~~~~~l~~L~~~ea~~Lf~~~a 204 (1170)
..+-|+++|.... ... + ..+...+. ..|+.+|+||....+........ .....+. ++. +... + .+-
T Consensus 406 ~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~-~d~-~~l~-~-~Yk 479 (782)
T PRK00409 406 DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVE-FDE-ETLR-P-TYR 479 (782)
T ss_pred CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEE-Eec-CcCc-E-EEE
Confidence 4778999999742 222 1 12222221 24789999999977654332111 0111111 111 1110 1 111
Q ss_pred cCCCCCChhhHHHHHHHHHHhCCCchHHHHHHHhhcCCCHHHHHHHHHHhh
Q 045458 205 FKTHQPVGEYVELSERVLEYAGGLPLALKVLGSFLIGRTADLWRSALERLK 255 (1170)
Q Consensus 205 ~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L~~~~~~~w~~~l~~l~ 255 (1170)
+....+.. .-|-.|++++ |+|-.+..-|..+.+.....++..++++.
T Consensus 480 l~~G~~g~---S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~ 526 (782)
T PRK00409 480 LLIGIPGK---SNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLE 526 (782)
T ss_pred EeeCCCCC---cHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 11111211 2355566665 89988888888877666566666666654
No 500
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.27 E-value=0.09 Score=55.18 Aligned_cols=23 Identities=43% Similarity=0.683 Sum_probs=21.1
Q ss_pred EEEEEeCCCccHHHHHHHHHhhh
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
+|+|.|..|+||||+|+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
Done!