Query 045458
Match_columns 1170
No_of_seqs 774 out of 5690
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 23:53:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045458.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045458hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.3E-38 7.7E-43 403.7 32.4 469 399-869 174-729 (768)
2 2a5y_B CED-4; apoptosis; HET: 100.0 2.4E-39 8.1E-44 394.5 22.1 302 31-346 131-472 (549)
3 3rgz_A Protein brassinosteroid 100.0 1.3E-37 4.3E-42 396.8 27.2 480 398-884 121-718 (768)
4 3t6q_A CD180 antigen; protein- 100.0 9.5E-35 3.2E-39 361.8 38.5 459 393-855 47-558 (606)
5 3t6q_A CD180 antigen; protein- 100.0 4.3E-34 1.5E-38 355.9 38.6 448 407-855 16-511 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 3.3E-34 1.1E-38 357.0 34.4 428 394-856 47-557 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 2.1E-34 7.3E-39 358.7 32.6 462 403-874 32-552 (606)
8 1ziw_A TOLL-like receptor 3; i 100.0 2.3E-32 8E-37 345.0 41.2 478 393-874 39-591 (680)
9 3sfz_A APAF-1, apoptotic pepti 100.0 3.9E-34 1.3E-38 387.1 24.5 310 22-345 118-452 (1249)
10 4eco_A Uncharacterized protein 100.0 7.1E-34 2.4E-38 353.7 24.9 355 434-814 193-601 (636)
11 2z63_A TOLL-like receptor 4, v 100.0 4.1E-33 1.4E-37 344.5 29.5 422 403-833 28-504 (570)
12 1ziw_A TOLL-like receptor 3; i 100.0 8.6E-32 2.9E-36 339.8 41.7 476 403-884 25-574 (680)
13 3j0a_A TOLL-like receptor 5; m 100.0 2.8E-32 9.6E-37 351.1 37.6 443 403-853 24-556 (844)
14 1z6t_A APAF-1, apoptotic prote 100.0 1.5E-33 5.3E-38 349.0 22.5 334 22-371 118-497 (591)
15 4eco_A Uncharacterized protein 100.0 3.2E-33 1.1E-37 347.9 24.5 342 507-855 197-598 (636)
16 1vt4_I APAF-1 related killer D 100.0 1.5E-34 5.2E-39 352.6 12.0 280 29-338 129-436 (1221)
17 4ecn_A Leucine-rich repeat pro 100.0 8.9E-33 3E-37 348.8 27.6 341 485-856 440-839 (876)
18 3j0a_A TOLL-like receptor 5; m 100.0 9.5E-32 3.2E-36 346.2 35.4 443 407-855 8-537 (844)
19 2z63_A TOLL-like receptor 4, v 100.0 4.4E-32 1.5E-36 335.3 30.0 418 393-841 42-536 (570)
20 4ecn_A Leucine-rich repeat pro 100.0 3.2E-32 1.1E-36 343.8 28.5 348 504-875 436-835 (876)
21 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-31 3.7E-36 330.1 29.3 417 403-855 26-508 (549)
22 2z7x_B TOLL-like receptor 1, v 100.0 3.5E-31 1.2E-35 323.1 27.3 415 407-855 4-479 (520)
23 2z81_A CD282 antigen, TOLL-lik 100.0 8.2E-30 2.8E-34 313.3 27.6 455 408-873 10-503 (549)
24 2z7x_B TOLL-like receptor 1, v 100.0 2E-29 7E-34 307.5 28.2 412 427-874 3-475 (520)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.7E-29 2.3E-33 305.6 30.7 416 404-854 32-507 (562)
26 3v47_A TOLL-like receptor 5B a 100.0 1.2E-28 3.9E-33 295.6 27.0 375 427-840 13-412 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 7.2E-28 2.5E-32 286.4 27.7 384 425-854 12-426 (454)
28 1o6v_A Internalin A; bacterial 100.0 2.9E-27 1E-31 283.7 32.4 342 425-836 47-388 (466)
29 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.4E-27 1.9E-31 288.5 30.9 413 425-874 32-504 (562)
30 3v47_A TOLL-like receptor 5B a 100.0 5.3E-27 1.8E-31 281.1 28.0 355 422-814 28-409 (455)
31 1o6v_A Internalin A; bacterial 100.0 1.5E-26 5.2E-31 277.5 31.9 340 469-855 46-386 (466)
32 4g8a_A TOLL-like receptor 4; l 99.9 2.2E-26 7.5E-31 288.1 31.6 199 655-855 369-578 (635)
33 1jl5_A Outer protein YOPM; leu 99.9 3.5E-26 1.2E-30 271.8 29.4 377 396-840 27-433 (454)
34 4fmz_A Internalin; leucine ric 99.9 1.7E-25 5.9E-30 257.7 27.4 301 425-740 45-345 (347)
35 3bz5_A Internalin-J, INLJ; leu 99.9 2.7E-25 9.2E-30 264.5 29.6 219 426-665 44-262 (457)
36 4fmz_A Internalin; leucine ric 99.9 2.9E-25 9.8E-30 255.8 28.9 303 467-834 42-344 (347)
37 3bz5_A Internalin-J, INLJ; leu 99.9 6.9E-26 2.4E-30 269.6 23.9 354 398-841 37-392 (457)
38 2id5_A Lingo-1, leucine rich r 99.9 4.3E-25 1.5E-29 266.1 29.4 312 427-740 14-332 (477)
39 2id5_A Lingo-1, leucine rich r 99.9 5.3E-25 1.8E-29 265.2 29.6 274 538-835 55-332 (477)
40 4g8a_A TOLL-like receptor 4; l 99.9 9.3E-25 3.2E-29 273.3 30.4 180 632-835 395-579 (635)
41 3o6n_A APL1; leucine-rich repe 99.9 4.5E-24 1.5E-28 249.9 25.5 307 444-814 43-353 (390)
42 3o6n_A APL1; leucine-rich repe 99.9 6.7E-24 2.3E-28 248.5 26.9 301 491-854 44-349 (390)
43 3oja_B Anopheles plasmodium-re 99.9 2.8E-23 9.6E-28 256.8 27.8 303 491-854 50-355 (597)
44 3oja_B Anopheles plasmodium-re 99.9 1.7E-23 5.7E-28 258.8 25.8 284 445-741 50-337 (597)
45 1xku_A Decorin; proteoglycan, 99.9 2.2E-22 7.5E-27 229.8 26.2 291 425-739 32-330 (330)
46 1xku_A Decorin; proteoglycan, 99.9 3.7E-22 1.3E-26 227.9 26.5 199 538-740 75-275 (330)
47 2ft3_A Biglycan; proteoglycan, 99.9 1.8E-22 6.2E-27 230.6 23.0 289 425-739 34-331 (332)
48 2ft3_A Biglycan; proteoglycan, 99.9 5.2E-22 1.8E-26 226.8 24.6 197 538-739 77-275 (332)
49 1ogq_A PGIP-2, polygalacturona 99.9 1.4E-22 4.9E-27 229.0 14.1 251 540-840 51-308 (313)
50 4fcg_A Uncharacterized protein 99.9 3E-21 1E-25 219.5 21.9 220 563-832 81-310 (328)
51 4fcg_A Uncharacterized protein 99.9 3.5E-21 1.2E-25 219.0 21.9 200 538-739 103-312 (328)
52 1ogq_A PGIP-2, polygalacturona 99.9 2.1E-22 7.2E-27 227.7 10.1 183 554-739 116-302 (313)
53 1z7x_W Ribonuclease inhibitor; 99.9 2.7E-24 9.2E-29 258.0 -6.4 353 445-835 2-410 (461)
54 3ogk_B Coronatine-insensitive 99.9 1.5E-23 5.1E-28 260.1 -0.5 274 538-834 219-524 (592)
55 1z7x_W Ribonuclease inhibitor; 99.9 1.2E-24 4.1E-29 261.1 -11.8 372 424-834 3-438 (461)
56 3zyj_A Leucine-rich repeat-con 99.8 9.4E-20 3.2E-24 216.6 25.3 244 565-835 45-291 (440)
57 2z80_A TOLL-like receptor 2, v 99.8 1.2E-20 4.3E-25 217.4 16.1 263 552-836 43-314 (353)
58 3ogk_B Coronatine-insensitive 99.8 1E-22 3.6E-27 252.5 -1.7 412 421-860 71-528 (592)
59 3zyi_A Leucine-rich repeat-con 99.8 1.2E-19 4.1E-24 216.5 24.0 243 565-834 56-301 (452)
60 3g06_A SSPH2 (leucine-rich rep 99.8 1.2E-18 4.2E-23 213.1 31.3 257 493-836 41-297 (622)
61 2z66_A Variable lymphocyte rec 99.8 1.4E-19 5E-24 204.0 20.9 240 567-833 11-258 (306)
62 3g06_A SSPH2 (leucine-rich rep 99.8 4.4E-19 1.5E-23 217.0 25.1 258 425-719 41-298 (622)
63 3o53_A Protein LRIM1, AGAP0063 99.8 4.1E-21 1.4E-25 217.7 5.0 240 563-838 34-277 (317)
64 1ozn_A Reticulon 4 receptor; N 99.8 2.2E-19 7.7E-24 200.2 19.0 220 566-834 14-236 (285)
65 2z80_A TOLL-like receptor 2, v 99.8 1.8E-19 6.2E-24 207.6 18.4 270 406-696 34-316 (353)
66 2p1m_B Transport inhibitor res 99.8 3.6E-22 1.2E-26 247.8 -5.9 62 774-835 455-518 (594)
67 1ozn_A Reticulon 4 receptor; N 99.8 1.6E-19 5.6E-24 201.3 15.9 221 426-647 13-238 (285)
68 3zyj_A Leucine-rich repeat-con 99.8 2.1E-18 7.2E-23 205.0 24.3 201 538-739 87-290 (440)
69 2z66_A Variable lymphocyte rec 99.8 8.3E-20 2.8E-24 206.0 11.2 241 428-671 11-262 (306)
70 3zyi_A Leucine-rich repeat-con 99.8 2.9E-18 1E-22 204.5 24.3 243 471-739 56-301 (452)
71 1wwl_A Monocyte differentiatio 99.8 1.8E-20 6.2E-25 211.8 4.8 241 538-834 42-307 (312)
72 2p1m_B Transport inhibitor res 99.8 2.9E-21 1E-25 239.6 -6.0 393 444-856 64-518 (594)
73 1wwl_A Monocyte differentiatio 99.8 1.9E-19 6.3E-24 203.5 6.5 200 538-741 94-309 (312)
74 3o53_A Protein LRIM1, AGAP0063 99.8 6.2E-20 2.1E-24 207.9 1.8 238 538-810 33-272 (317)
75 3oja_A Leucine-rich immune mol 99.8 9.9E-19 3.4E-23 209.8 11.3 233 564-832 35-271 (487)
76 3oja_A Leucine-rich immune mol 99.7 8.2E-18 2.8E-22 201.8 15.0 225 576-836 20-250 (487)
77 1p9a_G Platelet glycoprotein I 99.7 3.8E-16 1.3E-20 173.9 21.6 152 559-738 6-158 (290)
78 2z62_A TOLL-like receptor 4, v 99.7 2.1E-16 7.2E-21 175.1 18.6 216 569-835 13-236 (276)
79 2z62_A TOLL-like receptor 4, v 99.7 3.1E-16 1.1E-20 173.7 19.7 213 552-814 19-238 (276)
80 1p9a_G Platelet glycoprotein I 99.7 6.5E-16 2.2E-20 172.1 21.8 199 606-834 6-206 (290)
81 2o6q_A Variable lymphocyte rec 99.7 2.3E-15 7.9E-20 166.0 23.6 150 564-739 17-168 (270)
82 2o6q_A Variable lymphocyte rec 99.7 2E-15 6.7E-20 166.6 22.8 198 518-740 18-217 (270)
83 4ay9_X Follicle-stimulating ho 99.7 7E-16 2.4E-20 177.1 19.1 235 427-690 12-255 (350)
84 2xwt_C Thyrotropin receptor; s 99.7 5.3E-16 1.8E-20 167.8 16.7 58 775-835 179-238 (239)
85 2ca6_A RAN GTPase-activating p 99.7 7.1E-18 2.4E-22 196.8 -0.3 245 573-836 19-316 (386)
86 1h6u_A Internalin H; cell adhe 99.6 1.9E-15 6.5E-20 170.0 18.4 170 630-834 59-228 (308)
87 3rfs_A Internalin B, repeat mo 99.6 1.5E-15 5.2E-20 167.7 17.1 207 561-824 39-247 (272)
88 2ast_B S-phase kinase-associat 99.6 3.7E-17 1.3E-21 186.9 4.0 68 771-841 243-311 (336)
89 4glp_A Monocyte differentiatio 99.6 9.5E-16 3.2E-20 172.9 14.7 200 538-741 90-307 (310)
90 2qen_A Walker-type ATPase; unk 99.6 4.8E-15 1.7E-19 170.3 20.6 294 22-338 6-348 (350)
91 3rfs_A Internalin B, repeat mo 99.6 3.9E-15 1.3E-19 164.4 19.0 156 632-835 61-217 (272)
92 2xwt_C Thyrotropin receptor; s 99.6 1.8E-15 6.3E-20 163.6 15.6 195 540-739 32-237 (239)
93 2ast_B S-phase kinase-associat 99.6 7E-17 2.4E-21 184.6 4.2 226 469-720 70-308 (336)
94 4glp_A Monocyte differentiatio 99.6 1.4E-15 4.9E-20 171.4 13.7 204 585-835 90-306 (310)
95 4ay9_X Follicle-stimulating ho 99.6 7.9E-15 2.7E-19 168.3 19.7 223 568-842 14-242 (350)
96 2ca6_A RAN GTPase-activating p 99.6 9.8E-17 3.3E-21 187.2 1.7 234 444-696 30-318 (386)
97 1h6u_A Internalin H; cell adhe 99.6 9.4E-15 3.2E-19 164.3 17.8 37 702-739 192-228 (308)
98 3m19_A Variable lymphocyte rec 99.6 3.4E-14 1.1E-18 154.8 21.0 176 634-835 14-191 (251)
99 2fna_A Conserved hypothetical 99.6 4E-14 1.4E-18 163.0 21.9 294 22-338 7-356 (357)
100 1w5s_A Origin recognition comp 99.6 6.6E-14 2.3E-18 164.8 21.4 290 23-323 17-371 (412)
101 3m19_A Variable lymphocyte rec 99.6 7.7E-14 2.6E-18 151.9 19.6 175 565-741 16-192 (251)
102 3goz_A Leucine-rich repeat-con 99.5 3.9E-16 1.3E-20 180.2 -0.3 252 544-834 3-295 (362)
103 3cvr_A Invasion plasmid antige 99.5 1E-13 3.5E-18 167.4 19.2 132 587-739 60-191 (571)
104 1h6t_A Internalin B; cell adhe 99.5 1.6E-13 5.6E-18 152.8 16.6 169 632-835 44-212 (291)
105 3goz_A Leucine-rich repeat-con 99.5 2E-15 6.8E-20 174.2 0.7 54 450-503 2-62 (362)
106 3cvr_A Invasion plasmid antige 99.5 6.2E-13 2.1E-17 160.6 20.6 177 540-741 60-243 (571)
107 1h6t_A Internalin B; cell adhe 99.5 5.3E-13 1.8E-17 148.6 15.7 168 562-740 45-212 (291)
108 1m9s_A Internalin B; cell inva 99.4 6.2E-13 2.1E-17 162.5 17.4 168 633-835 42-209 (605)
109 2qby_B CDC6 homolog 3, cell di 99.4 5.9E-12 2E-16 146.5 24.7 278 27-323 19-339 (384)
110 2o6s_A Variable lymphocyte rec 99.4 2.5E-12 8.4E-17 135.6 17.7 173 637-841 10-183 (208)
111 4ezg_A Putative uncharacterize 99.4 7.3E-13 2.5E-17 138.3 13.2 152 560-740 41-193 (197)
112 4ezg_A Putative uncharacterize 99.4 2.9E-13 1E-17 141.4 9.9 128 466-596 63-191 (197)
113 1dce_A Protein (RAB geranylger 99.4 1.6E-15 5.5E-20 184.3 -9.7 216 560-830 346-567 (567)
114 1xeu_A Internalin C; cellular 99.4 5.3E-13 1.8E-17 146.2 10.6 167 633-835 18-184 (263)
115 1m9s_A Internalin B; cell inva 99.4 1.3E-12 4.5E-17 159.6 14.2 166 425-598 44-209 (605)
116 2o6s_A Variable lymphocyte rec 99.4 3.1E-12 1.1E-16 134.8 15.1 160 538-728 27-189 (208)
117 2v1u_A Cell division control p 99.4 1.3E-11 4.4E-16 143.7 20.8 287 23-323 14-351 (387)
118 2v9t_B SLIT homolog 2 protein 99.4 7.2E-12 2.4E-16 133.2 16.9 101 637-739 14-115 (220)
119 2xot_A Amphoterin-induced prot 99.4 4.2E-12 1.4E-16 146.1 15.4 171 637-834 21-200 (361)
120 3e6j_A Variable lymphocyte rec 99.4 1.2E-11 4.1E-16 132.4 17.8 150 636-835 21-171 (229)
121 2qby_A CDC6 homolog 1, cell di 99.4 9E-12 3.1E-16 145.0 18.2 289 23-323 15-348 (386)
122 2v9t_B SLIT homolog 2 protein 99.3 9.5E-12 3.2E-16 132.2 15.6 148 566-739 14-163 (220)
123 2v70_A SLIT-2, SLIT homolog 2 99.3 1.6E-11 5.6E-16 130.3 16.4 101 637-739 14-116 (220)
124 1dce_A Protein (RAB geranylger 99.3 1.7E-14 5.8E-19 175.2 -8.9 192 444-650 347-549 (567)
125 3e6j_A Variable lymphocyte rec 99.3 2.4E-11 8.2E-16 130.0 16.5 148 566-739 22-170 (229)
126 1fnn_A CDC6P, cell division co 99.3 4.3E-11 1.5E-15 139.4 20.1 309 24-344 13-386 (389)
127 1xeu_A Internalin C; cellular 99.3 3.3E-12 1.1E-16 139.8 9.6 166 538-739 18-183 (263)
128 2v70_A SLIT-2, SLIT homolog 2 99.3 2.2E-11 7.4E-16 129.4 14.7 63 677-739 101-164 (220)
129 2xot_A Amphoterin-induced prot 99.3 1.4E-11 4.7E-16 141.8 14.1 171 566-739 21-200 (361)
130 1njg_A DNA polymerase III subu 99.2 5.2E-11 1.8E-15 128.7 14.6 203 23-239 18-231 (250)
131 2ell_A Acidic leucine-rich nuc 99.2 2.3E-11 8E-16 123.2 9.7 129 682-834 25-158 (168)
132 2je0_A Acidic leucine-rich nuc 99.2 1.6E-11 5.4E-16 121.7 7.3 128 681-832 17-149 (149)
133 2chg_A Replication factor C sm 99.2 1.9E-10 6.3E-15 122.4 15.6 192 23-237 12-205 (226)
134 2ell_A Acidic leucine-rich nuc 99.1 1.2E-10 4.1E-15 118.0 11.3 104 563-668 24-131 (168)
135 4b8c_D Glucose-repressible alc 99.1 1.8E-11 6.2E-16 153.5 5.9 112 627-740 217-328 (727)
136 4b8c_D Glucose-repressible alc 99.1 1.1E-11 3.7E-16 155.5 2.5 154 554-715 215-369 (727)
137 1sxj_B Activator 1 37 kDa subu 99.1 4.9E-10 1.7E-14 126.8 14.8 191 23-237 16-211 (323)
138 2je0_A Acidic leucine-rich nuc 99.1 1.4E-10 4.6E-15 114.9 8.7 122 565-688 19-147 (149)
139 1a9n_A U2A', U2A'; complex (nu 99.1 2E-10 6.9E-15 117.3 8.8 61 772-834 85-151 (176)
140 2wfh_A SLIT homolog 2 protein 99.1 1.3E-09 4.5E-14 112.9 14.8 123 685-834 14-137 (193)
141 1w8a_A SLIT protein; signaling 99.0 1.7E-09 5.9E-14 112.0 12.9 124 566-691 11-136 (192)
142 3sb4_A Hypothetical leucine ri 99.0 7.3E-10 2.5E-14 125.7 10.2 215 515-735 100-328 (329)
143 2o6r_A Variable lymphocyte rec 99.0 5.5E-09 1.9E-13 106.6 15.2 42 772-814 97-138 (177)
144 3sb4_A Hypothetical leucine ri 99.0 9.5E-10 3.3E-14 124.7 10.2 253 402-662 48-326 (329)
145 2wfh_A SLIT homolog 2 protein 99.0 4E-09 1.4E-13 109.2 14.0 107 634-740 31-138 (193)
146 1w8a_A SLIT protein; signaling 99.0 3.6E-09 1.2E-13 109.5 13.1 107 564-670 30-139 (192)
147 1a9n_A U2A', U2A'; complex (nu 99.0 1.2E-09 4.1E-14 111.5 9.1 106 561-668 17-124 (176)
148 1iqp_A RFCS; clamp loader, ext 98.9 4.8E-09 1.7E-13 118.7 14.0 193 22-238 19-214 (327)
149 2o6r_A Variable lymphocyte rec 98.9 1E-08 3.5E-13 104.6 14.0 100 566-667 10-110 (177)
150 1ds9_A Outer arm dynein; leuci 98.8 9E-11 3.1E-15 122.5 -6.2 119 552-674 37-157 (198)
151 1ds9_A Outer arm dynein; leuci 98.8 2.7E-11 9.1E-16 126.5 -10.3 57 775-834 93-151 (198)
152 1hqc_A RUVB; extended AAA-ATPa 98.8 6.6E-08 2.3E-12 109.2 16.0 260 23-327 7-302 (324)
153 3g39_A Variable lymphocyte rec 98.7 5.2E-08 1.8E-12 98.5 12.3 102 707-834 11-113 (170)
154 2r9u_A Variable lymphocyte rec 98.7 6.2E-08 2.1E-12 98.3 12.6 101 708-834 15-116 (174)
155 2chq_A Replication factor C sm 98.7 1.1E-07 3.8E-12 107.0 14.3 187 23-236 12-204 (319)
156 3g39_A Variable lymphocyte rec 98.7 1E-07 3.4E-12 96.4 12.4 105 635-741 10-115 (170)
157 2r9u_A Variable lymphocyte rec 98.7 1.1E-07 3.7E-12 96.5 12.4 103 637-741 15-118 (174)
158 4fdw_A Leucine rich hypothetic 98.7 4.2E-07 1.4E-11 105.2 18.9 209 425-666 158-379 (401)
159 1jr3_A DNA polymerase III subu 98.7 8E-08 2.7E-12 110.9 12.7 201 23-237 11-222 (373)
160 3d8b_A Fidgetin-like protein 1 98.7 3.3E-07 1.1E-11 104.6 17.2 205 4-237 62-296 (357)
161 4fdw_A Leucine rich hypothetic 98.6 8.6E-07 3E-11 102.6 20.3 233 447-717 136-382 (401)
162 3pfi_A Holliday junction ATP-d 98.6 6.2E-07 2.1E-11 101.8 17.0 269 23-337 24-327 (338)
163 1jbk_A CLPB protein; beta barr 98.5 2.2E-07 7.7E-12 95.7 10.9 52 24-77 18-69 (195)
164 3h4m_A Proteasome-activating n 98.5 7E-07 2.4E-11 98.6 15.5 186 22-235 11-230 (285)
165 4fs7_A Uncharacterized protein 98.5 5.6E-06 1.9E-10 96.0 22.3 144 677-860 249-393 (394)
166 3te6_A Regulatory protein SIR3 98.5 7E-07 2.4E-11 98.4 13.3 169 29-204 21-211 (318)
167 3b9p_A CG5977-PA, isoform A; A 98.5 2.4E-06 8.2E-11 94.9 17.6 198 11-237 2-234 (297)
168 3eie_A Vacuolar protein sortin 98.4 3.2E-06 1.1E-10 95.0 17.8 186 22-236 12-228 (322)
169 2qp9_X Vacuolar protein sortin 98.4 3.8E-06 1.3E-10 95.5 18.4 199 10-237 31-262 (355)
170 4fs7_A Uncharacterized protein 98.4 7.1E-06 2.4E-10 95.2 20.4 61 393-454 61-125 (394)
171 3bos_A Putative DNA replicatio 98.4 5.4E-07 1.9E-11 96.7 9.7 178 25-237 25-218 (242)
172 2qz4_A Paraplegin; AAA+, SPG7, 98.4 5.3E-06 1.8E-10 90.2 17.4 185 26-235 4-221 (262)
173 1d2n_A N-ethylmaleimide-sensit 98.4 4.8E-06 1.6E-10 91.1 16.8 172 27-228 32-229 (272)
174 1sxj_D Activator 1 41 kDa subu 98.4 1.9E-06 6.6E-11 98.4 13.9 199 23-236 32-235 (353)
175 1xwi_A SKD1 protein; VPS4B, AA 98.4 7.6E-06 2.6E-10 91.6 18.4 187 23-237 7-224 (322)
176 1sxj_E Activator 1 40 kDa subu 98.4 9.2E-07 3.1E-11 101.1 11.0 201 23-236 9-237 (354)
177 1sxj_A Activator 1 95 kDa subu 98.4 4.2E-06 1.4E-10 100.3 16.9 191 23-235 34-252 (516)
178 3vfd_A Spastin; ATPase, microt 98.3 7.8E-06 2.7E-10 94.5 17.1 188 23-237 110-327 (389)
179 3un9_A NLR family member X1; l 98.3 9E-08 3.1E-12 109.8 0.6 43 628-670 205-252 (372)
180 2zan_A Vacuolar protein sortin 98.3 1.3E-05 4.5E-10 93.9 19.0 190 22-237 128-346 (444)
181 3un9_A NLR family member X1; l 98.3 6.9E-08 2.4E-12 110.7 -0.8 67 653-719 179-253 (372)
182 2ifg_A High affinity nerve gro 98.3 1.9E-06 6.4E-11 98.2 10.8 103 638-741 12-116 (347)
183 2z4s_A Chromosomal replication 98.3 2.9E-06 9.9E-11 99.3 12.5 183 27-235 104-305 (440)
184 3uk6_A RUVB-like 2; hexameric 98.3 6.7E-06 2.3E-10 94.4 14.8 204 27-236 43-303 (368)
185 3u61_B DNA polymerase accessor 98.2 5.7E-06 2E-10 93.1 13.4 183 23-233 21-213 (324)
186 3pvs_A Replication-associated 98.2 7.9E-06 2.7E-10 95.4 14.1 183 22-236 20-215 (447)
187 1l8q_A Chromosomal replication 98.2 1.1E-05 3.8E-10 90.7 15.0 181 25-231 8-203 (324)
188 2p65_A Hypothetical protein PF 98.2 7.1E-06 2.4E-10 83.8 11.8 52 24-77 18-69 (187)
189 3syl_A Protein CBBX; photosynt 98.2 8.4E-06 2.9E-10 91.1 13.4 153 29-205 32-218 (309)
190 2ra8_A Uncharacterized protein 98.2 7.8E-07 2.7E-11 101.0 4.8 60 680-739 251-318 (362)
191 2ifg_A High affinity nerve gro 98.1 4.7E-06 1.6E-10 94.9 10.2 82 569-651 14-97 (347)
192 3cf0_A Transitional endoplasmi 98.1 4.7E-05 1.6E-09 84.4 16.2 181 23-231 10-223 (301)
193 2ra8_A Uncharacterized protein 98.0 2.9E-06 9.9E-11 96.3 5.7 58 465-524 168-227 (362)
194 1sxj_C Activator 1 40 kDa subu 98.0 3.8E-05 1.3E-09 86.9 14.3 186 23-233 20-209 (340)
195 1a5t_A Delta prime, HOLB; zinc 98.0 9.1E-05 3.1E-09 83.4 17.0 182 34-235 8-204 (334)
196 1in4_A RUVB, holliday junction 98.0 8E-05 2.7E-09 83.9 15.8 262 24-331 21-318 (334)
197 4b4t_J 26S protease regulatory 97.9 0.00027 9.2E-09 79.8 19.1 172 27-229 147-354 (405)
198 4b4t_L 26S protease subunit RP 97.9 0.00026 9E-09 81.3 18.5 174 27-229 180-387 (437)
199 4gt6_A Cell surface protein; l 97.9 0.00087 3E-08 77.4 23.3 60 771-833 307-367 (394)
200 1lv7_A FTSH; alpha/beta domain 97.9 0.00011 3.9E-09 79.3 14.8 182 24-233 8-222 (257)
201 3pxg_A Negative regulator of g 97.9 7.8E-05 2.7E-09 88.0 14.1 152 24-204 176-338 (468)
202 4b4t_H 26S protease regulatory 97.8 0.00036 1.2E-08 79.8 18.2 171 27-228 208-414 (467)
203 3hu3_A Transitional endoplasmi 97.8 0.00012 4.2E-09 86.2 14.9 182 27-235 203-414 (489)
204 4b4t_M 26S protease regulatory 97.8 0.0002 6.8E-09 82.2 15.8 175 25-228 178-386 (434)
205 4gt6_A Cell surface protein; l 97.8 0.0012 4.2E-08 76.1 22.2 124 605-736 260-386 (394)
206 4b4t_I 26S protease regulatory 97.8 0.00041 1.4E-08 78.5 17.1 174 26-228 180-387 (437)
207 1qvr_A CLPB protein; coiled co 97.8 0.00013 4.6E-09 92.9 14.8 156 25-203 167-344 (854)
208 3n70_A Transport activator; si 97.7 5.1E-05 1.7E-09 74.0 7.9 47 29-75 2-48 (145)
209 4b4t_K 26S protease regulatory 97.7 0.00044 1.5E-08 79.3 16.7 173 27-228 171-378 (428)
210 2ce7_A Cell division protein F 97.7 0.00033 1.1E-08 81.8 15.8 177 26-229 14-221 (476)
211 1r6b_X CLPA protein; AAA+, N-t 97.7 0.00034 1.2E-08 88.2 16.9 156 26-204 184-362 (758)
212 4h09_A Hypothetical leucine ri 97.7 0.0043 1.5E-07 71.1 24.4 58 771-830 282-340 (379)
213 3ec2_A DNA replication protein 97.7 0.00019 6.5E-09 72.8 11.1 50 27-76 9-63 (180)
214 1ofh_A ATP-dependent HSL prote 97.6 0.00027 9.3E-09 78.6 13.2 49 28-76 15-75 (310)
215 2r62_A Cell division protease 97.6 4.6E-05 1.6E-09 83.0 6.6 157 24-204 7-196 (268)
216 2w58_A DNAI, primosome compone 97.6 0.00012 4E-09 76.0 8.3 62 25-86 22-89 (202)
217 3pxi_A Negative regulator of g 97.5 0.00036 1.2E-08 87.9 13.6 151 25-204 177-338 (758)
218 3e4g_A ATP synthase subunit S, 97.5 6.2E-05 2.1E-09 74.9 4.4 86 446-531 61-154 (176)
219 3e4g_A ATP synthase subunit S, 97.4 0.0001 3.5E-09 73.3 5.2 92 766-859 52-154 (176)
220 4fcw_A Chaperone protein CLPB; 97.4 0.001 3.5E-08 74.0 13.5 49 29-77 18-73 (311)
221 3t15_A Ribulose bisphosphate c 97.4 0.0008 2.7E-08 74.0 12.3 28 50-77 35-62 (293)
222 1ixz_A ATP-dependent metallopr 97.4 0.0023 7.9E-08 68.7 15.8 157 23-204 11-199 (254)
223 2gno_A DNA polymerase III, gam 97.4 0.00087 3E-08 73.9 12.3 146 32-204 1-152 (305)
224 2c9o_A RUVB-like 1; hexameric 97.4 0.00096 3.3E-08 78.5 13.4 50 27-76 36-88 (456)
225 3co5_A Putative two-component 97.3 8.1E-05 2.8E-09 72.3 3.2 49 28-76 4-52 (143)
226 1io0_A Tropomodulin; LRR prote 97.3 2.4E-05 8.3E-10 79.9 -0.8 61 774-834 92-162 (185)
227 3cf2_A TER ATPase, transitiona 97.3 0.0014 4.7E-08 81.0 13.7 175 28-230 204-408 (806)
228 2bjv_A PSP operon transcriptio 97.3 0.002 6.7E-08 69.8 13.6 50 27-76 5-54 (265)
229 1iy2_A ATP-dependent metallopr 97.3 0.0055 1.9E-07 66.8 17.1 156 23-204 35-223 (278)
230 4h09_A Hypothetical leucine ri 97.2 0.033 1.1E-06 63.6 24.2 87 770-867 258-345 (379)
231 3m6a_A ATP-dependent protease 97.2 0.002 7E-08 77.2 14.0 158 30-204 83-266 (543)
232 1ojl_A Transcriptional regulat 97.2 0.0018 6.1E-08 71.5 11.9 48 28-75 2-49 (304)
233 1io0_A Tropomodulin; LRR prote 97.1 0.00014 4.9E-09 74.1 1.8 11 681-691 151-161 (185)
234 2dhr_A FTSH; AAA+ protein, hex 97.0 0.0032 1.1E-07 74.0 13.1 175 24-229 27-236 (499)
235 2x8a_A Nuclear valosin-contain 97.0 0.011 3.9E-07 63.9 16.7 152 27-204 9-191 (274)
236 2kjq_A DNAA-related protein; s 96.9 0.00061 2.1E-08 66.4 4.9 27 51-77 36-62 (149)
237 1ypw_A Transitional endoplasmi 96.9 0.0027 9.1E-08 79.9 11.9 152 27-204 203-385 (806)
238 3rw6_A Nuclear RNA export fact 96.7 0.0013 4.5E-08 70.5 6.0 68 772-840 167-237 (267)
239 3pxi_A Negative regulator of g 96.7 0.0045 1.5E-07 77.9 11.1 150 28-204 491-675 (758)
240 2r44_A Uncharacterized protein 96.7 0.0029 9.9E-08 71.0 8.4 47 27-77 26-72 (331)
241 1um8_A ATP-dependent CLP prote 96.5 0.0098 3.4E-07 67.9 11.8 49 28-76 21-97 (376)
242 2cvh_A DNA repair and recombin 96.5 0.0058 2E-07 63.8 8.9 35 39-73 8-42 (220)
243 3rw6_A Nuclear RNA export fact 96.4 0.002 6.7E-08 69.2 4.8 15 584-598 168-182 (267)
244 1r6b_X CLPA protein; AAA+, N-t 96.4 0.0082 2.8E-07 75.6 10.5 48 28-75 458-512 (758)
245 1g5t_A COB(I)alamin adenosyltr 96.1 0.0056 1.9E-07 61.7 5.8 117 52-173 29-164 (196)
246 2qgz_A Helicase loader, putati 96.1 0.014 4.9E-07 64.3 9.5 61 26-86 122-188 (308)
247 3bh0_A DNAB-like replicative h 96.0 0.033 1.1E-06 61.7 11.9 55 31-86 49-103 (315)
248 3lw7_A Adenylate kinase relate 95.9 0.042 1.5E-06 54.6 11.5 22 52-74 2-23 (179)
249 2vhj_A Ntpase P4, P4; non- hyd 95.9 0.0083 2.8E-07 65.3 6.2 24 51-74 123-146 (331)
250 3hr8_A Protein RECA; alpha and 95.8 0.024 8.2E-07 63.3 9.9 79 8-86 10-96 (356)
251 1ye8_A Protein THEP1, hypothet 95.7 0.085 2.9E-06 52.8 12.4 24 53-76 2-25 (178)
252 2b8t_A Thymidine kinase; deoxy 95.6 0.029 9.9E-07 58.3 8.8 112 51-173 12-127 (223)
253 4a1f_A DNAB helicase, replicat 95.4 0.04 1.4E-06 61.1 9.6 56 30-86 26-81 (338)
254 4a74_A DNA repair and recombin 95.4 0.022 7.7E-07 59.7 7.2 38 38-75 12-49 (231)
255 3jvv_A Twitching mobility prot 95.4 0.055 1.9E-06 60.7 10.6 110 52-175 124-234 (356)
256 3cf2_A TER ATPase, transitiona 95.3 0.025 8.5E-07 69.9 8.0 150 28-204 477-661 (806)
257 1xp8_A RECA protein, recombina 95.3 0.04 1.4E-06 62.0 9.1 57 30-86 52-109 (366)
258 2w0m_A SSO2452; RECA, SSPF, un 95.2 0.036 1.2E-06 58.2 8.3 49 38-86 10-58 (235)
259 1vma_A Cell division protein F 95.2 0.095 3.2E-06 57.4 11.6 45 34-78 81-131 (306)
260 3sr0_A Adenylate kinase; phosp 95.1 0.033 1.1E-06 57.2 7.3 88 53-152 2-93 (206)
261 3e70_C DPA, signal recognition 95.1 0.1 3.5E-06 57.7 11.7 28 50-77 128-155 (328)
262 2zr9_A Protein RECA, recombina 95.1 0.042 1.4E-06 61.5 8.6 79 8-86 11-96 (349)
263 2q6t_A DNAB replication FORK h 95.0 0.096 3.3E-06 61.0 11.8 54 32-86 182-236 (444)
264 1jr3_D DNA polymerase III, del 95.0 0.18 6E-06 56.6 13.6 157 50-235 17-184 (343)
265 3io5_A Recombination and repai 95.0 0.045 1.5E-06 59.3 8.0 48 38-86 12-65 (333)
266 3umf_A Adenylate kinase; rossm 94.9 0.039 1.3E-06 57.0 7.3 27 49-75 27-53 (217)
267 1u94_A RECA protein, recombina 94.9 0.043 1.5E-06 61.5 8.1 57 30-86 41-98 (356)
268 3bgw_A DNAB-like replicative h 94.9 0.08 2.7E-06 61.4 10.5 54 32-86 179-232 (444)
269 3hws_A ATP-dependent CLP prote 94.7 0.023 7.9E-07 64.5 5.3 48 29-76 16-76 (363)
270 1n0w_A DNA repair protein RAD5 94.7 0.064 2.2E-06 56.7 8.5 37 38-74 11-47 (243)
271 2eyu_A Twitching motility prot 94.7 0.068 2.3E-06 57.2 8.6 109 51-174 25-135 (261)
272 3c8u_A Fructokinase; YP_612366 94.7 0.028 9.7E-07 58.0 5.3 40 37-76 8-47 (208)
273 1qvr_A CLPB protein; coiled co 94.6 0.074 2.5E-06 67.6 10.2 48 29-76 559-613 (854)
274 1qhx_A CPT, protein (chloramph 94.6 0.016 5.4E-07 58.2 3.2 25 52-76 4-28 (178)
275 3kl4_A SRP54, signal recogniti 94.6 0.15 5.3E-06 58.3 11.5 29 50-78 96-124 (433)
276 1rz3_A Hypothetical protein rb 94.6 0.052 1.8E-06 55.7 7.0 44 33-76 3-47 (201)
277 3dm5_A SRP54, signal recogniti 94.5 0.1 3.5E-06 59.8 10.0 29 50-78 99-127 (443)
278 2r6a_A DNAB helicase, replicat 94.5 0.14 4.9E-06 59.7 11.6 49 37-86 190-239 (454)
279 4gp7_A Metallophosphoesterase; 94.5 0.056 1.9E-06 53.8 6.9 22 51-72 9-30 (171)
280 1sky_E F1-ATPase, F1-ATP synth 94.5 0.098 3.4E-06 60.1 9.6 32 52-83 152-183 (473)
281 1v5w_A DMC1, meiotic recombina 94.3 0.18 6E-06 56.5 11.2 39 37-75 108-146 (343)
282 3kb2_A SPBC2 prophage-derived 94.3 0.022 7.4E-07 56.7 3.3 25 52-76 2-26 (173)
283 2px0_A Flagellar biosynthesis 94.3 0.18 6.1E-06 55.0 10.9 28 50-77 104-131 (296)
284 3nbx_X ATPase RAVA; AAA+ ATPas 94.3 0.035 1.2E-06 65.2 5.5 45 28-76 22-66 (500)
285 1ypw_A Transitional endoplasmi 94.3 0.0076 2.6E-07 75.7 -0.1 52 27-78 476-538 (806)
286 1j8m_F SRP54, signal recogniti 94.1 0.081 2.8E-06 57.8 7.7 43 36-78 76-125 (297)
287 2xxa_A Signal recognition part 94.0 0.15 5.1E-06 58.7 10.1 43 36-78 78-127 (433)
288 1zu4_A FTSY; GTPase, signal re 94.0 0.099 3.4E-06 57.7 8.2 36 50-86 104-139 (320)
289 1odf_A YGR205W, hypothetical 3 93.9 0.057 2E-06 58.7 6.0 30 48-77 28-57 (290)
290 3trf_A Shikimate kinase, SK; a 93.9 0.029 9.8E-07 56.7 3.3 25 52-76 6-30 (185)
291 3vaa_A Shikimate kinase, SK; s 93.9 0.03 1E-06 57.3 3.5 26 51-76 25-50 (199)
292 2z43_A DNA repair and recombin 93.9 0.12 4.3E-06 57.2 8.8 38 38-75 94-131 (324)
293 1ex7_A Guanylate kinase; subst 93.7 0.024 8.3E-07 57.1 2.4 28 52-79 2-29 (186)
294 1g8p_A Magnesium-chelatase 38 93.7 0.037 1.3E-06 62.3 4.2 53 22-76 18-70 (350)
295 2ewv_A Twitching motility prot 93.7 0.17 5.9E-06 57.1 9.7 109 51-173 136-245 (372)
296 3ice_A Transcription terminati 93.7 0.068 2.3E-06 59.4 5.9 27 52-78 175-201 (422)
297 2pt7_A CAG-ALFA; ATPase, prote 93.6 0.097 3.3E-06 58.2 7.1 103 52-173 172-276 (330)
298 2i1q_A DNA repair and recombin 93.5 0.17 5.7E-06 56.2 9.1 39 37-75 84-122 (322)
299 2ga8_A Hypothetical 39.9 kDa p 93.5 0.059 2E-06 59.6 5.1 49 31-79 2-52 (359)
300 1nks_A Adenylate kinase; therm 93.4 0.067 2.3E-06 54.1 5.2 26 52-77 2-27 (194)
301 2rhm_A Putative kinase; P-loop 93.4 0.055 1.9E-06 54.9 4.4 25 51-75 5-29 (193)
302 1zuh_A Shikimate kinase; alpha 93.3 0.041 1.4E-06 54.5 3.3 26 51-76 7-32 (168)
303 1ly1_A Polynucleotide kinase; 93.3 0.045 1.5E-06 54.8 3.6 22 52-73 3-24 (181)
304 3tlx_A Adenylate kinase 2; str 93.3 0.058 2E-06 57.2 4.6 41 35-75 13-53 (243)
305 3uie_A Adenylyl-sulfate kinase 93.2 0.076 2.6E-06 54.3 5.2 27 50-76 24-50 (200)
306 1kgd_A CASK, peripheral plasma 93.2 0.043 1.5E-06 55.2 3.1 25 52-76 6-30 (180)
307 3iij_A Coilin-interacting nucl 93.1 0.036 1.2E-06 55.6 2.6 25 51-75 11-35 (180)
308 3dzd_A Transcriptional regulat 93.1 1.6 5.5E-05 49.1 16.5 49 27-75 128-176 (368)
309 1kag_A SKI, shikimate kinase I 93.1 0.038 1.3E-06 55.0 2.6 25 52-76 5-29 (173)
310 2cbz_A Multidrug resistance-as 93.0 0.17 5.9E-06 53.2 7.6 24 52-75 32-55 (237)
311 1zp6_A Hypothetical protein AT 93.0 0.055 1.9E-06 54.8 3.7 24 51-74 9-32 (191)
312 1rj9_A FTSY, signal recognitio 92.9 0.13 4.5E-06 56.2 6.8 28 50-77 101-128 (304)
313 2yvu_A Probable adenylyl-sulfa 92.9 0.084 2.9E-06 53.2 4.9 28 50-77 12-39 (186)
314 3b9q_A Chloroplast SRP recepto 92.8 0.19 6.4E-06 55.0 7.9 28 50-77 99-126 (302)
315 2jaq_A Deoxyguanosine kinase; 92.8 0.053 1.8E-06 55.6 3.3 24 53-76 2-25 (205)
316 2ze6_A Isopentenyl transferase 92.8 0.059 2E-06 57.5 3.8 25 52-76 2-26 (253)
317 1kht_A Adenylate kinase; phosp 92.7 0.059 2E-06 54.5 3.5 26 52-77 4-29 (192)
318 1xjc_A MOBB protein homolog; s 92.7 0.087 3E-06 51.9 4.5 29 50-78 3-31 (169)
319 1tue_A Replication protein E1; 92.7 0.082 2.8E-06 53.4 4.3 42 35-77 43-84 (212)
320 3rfe_A Platelet glycoprotein I 92.7 0.2 6.9E-06 47.0 6.9 56 778-835 11-67 (130)
321 3lda_A DNA repair protein RAD5 92.7 0.23 8E-06 56.4 8.7 37 37-73 164-200 (400)
322 4eun_A Thermoresistant glucoki 92.6 0.082 2.8E-06 54.1 4.4 26 50-75 28-53 (200)
323 3tau_A Guanylate kinase, GMP k 92.6 0.06 2.1E-06 55.5 3.4 27 51-77 8-34 (208)
324 1via_A Shikimate kinase; struc 92.6 0.057 2E-06 53.9 3.1 24 53-76 6-29 (175)
325 3t61_A Gluconokinase; PSI-biol 92.6 0.053 1.8E-06 55.6 2.9 25 51-75 18-42 (202)
326 3a00_A Guanylate kinase, GMP k 92.6 0.057 2E-06 54.6 3.1 29 52-80 2-30 (186)
327 2c95_A Adenylate kinase 1; tra 92.5 0.063 2.2E-06 54.6 3.5 25 51-75 9-33 (196)
328 1ukz_A Uridylate kinase; trans 92.5 0.076 2.6E-06 54.4 4.1 27 49-75 13-39 (203)
329 1y63_A LMAJ004144AAA protein; 92.5 0.067 2.3E-06 53.9 3.5 24 51-74 10-33 (184)
330 2bdt_A BH3686; alpha-beta prot 92.5 0.096 3.3E-06 52.9 4.7 22 52-73 3-24 (189)
331 1knq_A Gluconate kinase; ALFA/ 92.5 0.089 3E-06 52.4 4.4 25 51-75 8-32 (175)
332 3gmt_A Adenylate kinase; ssgci 92.4 0.19 6.6E-06 52.1 6.9 24 52-75 9-32 (230)
333 2iyv_A Shikimate kinase, SK; t 92.4 0.051 1.7E-06 54.7 2.5 25 52-76 3-27 (184)
334 1g41_A Heat shock protein HSLU 92.4 0.11 3.7E-06 59.6 5.5 50 28-77 15-76 (444)
335 2vli_A Antibiotic resistance p 92.3 0.056 1.9E-06 54.3 2.7 25 52-76 6-30 (183)
336 1pzn_A RAD51, DNA repair and r 92.3 0.18 6.3E-06 56.4 7.2 38 38-75 118-155 (349)
337 3fwy_A Light-independent proto 92.3 0.1 3.6E-06 57.3 5.1 30 49-78 46-75 (314)
338 1tev_A UMP-CMP kinase; ploop, 92.3 0.076 2.6E-06 53.8 3.7 24 52-75 4-27 (196)
339 1uj2_A Uridine-cytidine kinase 92.3 0.078 2.7E-06 56.5 3.9 28 49-76 20-47 (252)
340 2og2_A Putative signal recogni 92.3 0.24 8.1E-06 55.4 7.9 28 50-77 156-183 (359)
341 2qor_A Guanylate kinase; phosp 92.2 0.061 2.1E-06 55.2 2.9 27 50-76 11-37 (204)
342 2pt5_A Shikimate kinase, SK; a 92.2 0.077 2.6E-06 52.4 3.5 24 53-76 2-25 (168)
343 3ney_A 55 kDa erythrocyte memb 92.2 0.07 2.4E-06 54.1 3.1 27 50-76 18-44 (197)
344 1e6c_A Shikimate kinase; phosp 92.1 0.058 2E-06 53.6 2.5 25 52-76 3-27 (173)
345 2plr_A DTMP kinase, probable t 92.1 0.12 4.2E-06 53.1 5.1 27 52-78 5-31 (213)
346 2bwj_A Adenylate kinase 5; pho 92.1 0.072 2.5E-06 54.3 3.3 25 52-76 13-37 (199)
347 3p32_A Probable GTPase RV1496/ 92.1 0.19 6.5E-06 56.5 7.0 40 38-77 66-105 (355)
348 3cm0_A Adenylate kinase; ATP-b 92.1 0.082 2.8E-06 53.2 3.6 24 52-75 5-28 (186)
349 1uf9_A TT1252 protein; P-loop, 92.1 0.091 3.1E-06 53.7 4.0 26 49-74 6-31 (203)
350 3k1j_A LON protease, ATP-depen 92.0 0.097 3.3E-06 63.6 4.7 51 24-78 37-87 (604)
351 2hf9_A Probable hydrogenase ni 92.0 0.21 7.3E-06 51.9 6.8 42 35-78 24-65 (226)
352 1nn5_A Similar to deoxythymidy 91.9 0.12 3.9E-06 53.5 4.7 28 51-78 9-36 (215)
353 1qf9_A UMP/CMP kinase, protein 91.9 0.093 3.2E-06 53.1 3.8 25 51-75 6-30 (194)
354 1fx0_B ATP synthase beta chain 91.9 0.45 1.5E-05 54.8 9.7 34 52-85 166-200 (498)
355 2ck3_D ATP synthase subunit be 91.9 0.59 2E-05 53.5 10.6 34 52-85 154-188 (482)
356 3a4m_A L-seryl-tRNA(SEC) kinas 91.8 0.093 3.2E-06 56.2 3.8 26 51-76 4-29 (260)
357 1gvn_B Zeta; postsegregational 91.8 0.15 5E-06 55.5 5.4 26 50-75 32-57 (287)
358 2qt1_A Nicotinamide riboside k 91.8 0.099 3.4E-06 53.8 3.8 27 49-75 19-45 (207)
359 2cdn_A Adenylate kinase; phosp 91.8 0.091 3.1E-06 53.7 3.5 25 51-75 20-44 (201)
360 2wsm_A Hydrogenase expression/ 91.7 0.15 5.3E-06 52.8 5.4 44 33-78 14-57 (221)
361 3e1s_A Exodeoxyribonuclease V, 91.7 0.64 2.2E-05 55.7 11.3 27 52-78 205-231 (574)
362 1aky_A Adenylate kinase; ATP:A 91.7 0.087 3E-06 54.8 3.3 25 52-76 5-29 (220)
363 2if2_A Dephospho-COA kinase; a 91.6 0.094 3.2E-06 53.8 3.4 21 53-73 3-23 (204)
364 2pbr_A DTMP kinase, thymidylat 91.6 0.097 3.3E-06 53.0 3.5 24 53-76 2-25 (195)
365 3tqc_A Pantothenate kinase; bi 91.6 0.15 5.2E-06 56.0 5.2 47 30-76 69-117 (321)
366 1cke_A CK, MSSA, protein (cyti 91.5 0.099 3.4E-06 54.6 3.5 24 52-75 6-29 (227)
367 2yhs_A FTSY, cell division pro 91.4 0.34 1.2E-05 56.1 8.1 36 50-86 292-327 (503)
368 2grj_A Dephospho-COA kinase; T 91.4 0.11 3.8E-06 52.6 3.7 25 50-74 11-35 (192)
369 2wwf_A Thymidilate kinase, put 91.4 0.11 3.6E-06 53.7 3.6 27 51-77 10-36 (212)
370 1pgv_A TMD-1, tropomodulin TMD 91.3 0.14 4.9E-06 51.7 4.3 37 632-668 68-109 (197)
371 1pgv_A TMD-1, tropomodulin TMD 91.3 0.19 6.4E-06 50.8 5.1 63 558-620 65-136 (197)
372 2j41_A Guanylate kinase; GMP, 91.2 0.11 3.7E-06 53.3 3.5 24 52-75 7-30 (207)
373 3asz_A Uridine kinase; cytidin 91.2 0.12 4.2E-06 53.2 3.8 27 50-76 5-31 (211)
374 1jjv_A Dephospho-COA kinase; P 91.2 0.11 3.7E-06 53.4 3.4 22 52-73 3-24 (206)
375 3tr0_A Guanylate kinase, GMP k 91.1 0.11 3.7E-06 53.3 3.3 24 52-75 8-31 (205)
376 1zak_A Adenylate kinase; ATP:A 91.1 0.098 3.3E-06 54.5 2.9 26 51-76 5-30 (222)
377 2z0h_A DTMP kinase, thymidylat 91.0 0.12 4E-06 52.5 3.5 25 53-77 2-26 (197)
378 2pez_A Bifunctional 3'-phospho 91.0 0.13 4.6E-06 51.3 3.9 26 51-76 5-30 (179)
379 1zd8_A GTP:AMP phosphotransfer 91.0 0.11 3.9E-06 54.2 3.4 25 51-75 7-31 (227)
380 2dr3_A UPF0273 protein PH0284; 91.0 0.16 5.5E-06 53.6 4.7 46 41-86 13-58 (247)
381 2bbw_A Adenylate kinase 4, AK4 90.9 0.12 4.1E-06 54.8 3.5 25 51-75 27-51 (246)
382 1tf7_A KAIC; homohexamer, hexa 90.9 0.68 2.3E-05 55.1 10.4 39 39-77 269-307 (525)
383 3fb4_A Adenylate kinase; psych 90.8 0.12 4.3E-06 53.4 3.5 23 53-75 2-24 (216)
384 2r2a_A Uncharacterized protein 90.8 0.56 1.9E-05 47.6 8.2 22 53-74 7-28 (199)
385 3nwj_A ATSK2; P loop, shikimat 90.8 0.098 3.4E-06 55.4 2.6 25 52-76 49-73 (250)
386 2v3c_C SRP54, signal recogniti 90.8 0.22 7.4E-06 57.4 5.7 41 38-78 79-126 (432)
387 2j37_W Signal recognition part 90.7 0.29 9.8E-06 57.3 6.7 41 38-78 81-128 (504)
388 1gtv_A TMK, thymidylate kinase 90.7 0.085 2.9E-06 54.5 2.0 24 53-76 2-25 (214)
389 2v54_A DTMP kinase, thymidylat 90.6 0.12 4.1E-06 52.9 3.1 24 52-75 5-28 (204)
390 3dl0_A Adenylate kinase; phosp 90.6 0.13 4.5E-06 53.2 3.4 23 53-75 2-24 (216)
391 2j9r_A Thymidine kinase; TK1, 90.4 0.64 2.2E-05 47.4 8.2 109 51-173 28-139 (214)
392 1m7g_A Adenylylsulfate kinase; 90.4 0.17 5.7E-06 52.2 4.0 26 51-76 25-50 (211)
393 4e22_A Cytidylate kinase; P-lo 90.4 0.14 4.6E-06 54.6 3.4 26 51-76 27-52 (252)
394 3l0o_A Transcription terminati 90.3 0.55 1.9E-05 52.1 8.0 40 36-77 162-201 (427)
395 1lvg_A Guanylate kinase, GMP k 90.3 0.11 3.9E-06 52.9 2.6 25 52-76 5-29 (198)
396 2f6r_A COA synthase, bifunctio 90.3 0.16 5.5E-06 55.0 3.8 24 50-73 74-97 (281)
397 3zvl_A Bifunctional polynucleo 90.1 0.58 2E-05 53.8 8.6 26 50-75 257-282 (416)
398 2p5t_B PEZT; postsegregational 90.0 0.15 5.1E-06 54.4 3.2 27 50-76 31-57 (253)
399 3ake_A Cytidylate kinase; CMP 89.9 0.17 5.8E-06 51.8 3.6 24 53-76 4-27 (208)
400 3be4_A Adenylate kinase; malar 89.9 0.16 5.6E-06 52.6 3.4 24 52-75 6-29 (217)
401 1vht_A Dephospho-COA kinase; s 89.9 0.19 6.5E-06 52.1 3.9 23 51-73 4-26 (218)
402 3a8t_A Adenylate isopentenyltr 89.9 0.15 5.2E-06 56.0 3.2 26 51-76 40-65 (339)
403 1q57_A DNA primase/helicase; d 89.8 0.97 3.3E-05 53.4 10.5 37 50-86 241-278 (503)
404 3d3q_A TRNA delta(2)-isopenten 89.8 0.18 6.2E-06 55.6 3.7 25 52-76 8-32 (340)
405 2jeo_A Uridine-cytidine kinase 89.8 0.19 6.4E-06 53.2 3.8 26 50-75 24-49 (245)
406 3end_A Light-independent proto 89.8 0.26 8.7E-06 54.2 5.1 30 49-78 39-68 (307)
407 1ak2_A Adenylate kinase isoenz 89.7 0.17 5.9E-06 53.0 3.5 25 52-76 17-41 (233)
408 1e4v_A Adenylate kinase; trans 89.7 0.18 6.3E-06 52.0 3.6 23 53-75 2-24 (214)
409 3llm_A ATP-dependent RNA helic 89.7 0.89 3E-05 47.5 9.0 21 52-72 77-97 (235)
410 3crm_A TRNA delta(2)-isopenten 89.6 0.18 6E-06 55.3 3.5 25 52-76 6-30 (323)
411 2xb4_A Adenylate kinase; ATP-b 89.6 0.18 6.2E-06 52.5 3.5 23 53-75 2-24 (223)
412 3r20_A Cytidylate kinase; stru 89.6 0.18 6.1E-06 52.6 3.4 25 52-76 10-34 (233)
413 3aez_A Pantothenate kinase; tr 89.6 0.19 6.5E-06 55.2 3.7 28 49-76 88-115 (312)
414 1htw_A HI0065; nucleotide-bind 89.6 0.2 6.7E-06 48.9 3.5 26 50-75 32-57 (158)
415 3cmu_A Protein RECA, recombina 89.6 0.21 7.1E-06 67.3 4.7 49 38-86 1413-1462(2050)
416 1svm_A Large T antigen; AAA+ f 89.4 0.27 9.3E-06 55.3 4.9 27 49-75 167-193 (377)
417 1np6_A Molybdopterin-guanine d 89.3 0.29 9.8E-06 48.6 4.5 27 51-77 6-32 (174)
418 1znw_A Guanylate kinase, GMP k 89.1 0.19 6.6E-06 51.6 3.2 24 52-75 21-44 (207)
419 1a7j_A Phosphoribulokinase; tr 89.1 0.13 4.6E-06 55.8 2.1 27 50-76 4-30 (290)
420 2ffh_A Protein (FFH); SRP54, s 89.1 0.65 2.2E-05 53.1 7.8 29 50-78 97-125 (425)
421 1z6g_A Guanylate kinase; struc 89.0 0.16 5.5E-06 52.7 2.5 24 52-75 24-47 (218)
422 3rfe_A Platelet glycoprotein I 88.9 0.48 1.6E-05 44.4 5.5 52 428-480 12-66 (130)
423 1u0j_A DNA replication protein 88.8 0.37 1.3E-05 51.0 5.1 36 40-75 93-128 (267)
424 3hjn_A DTMP kinase, thymidylat 88.8 1.1 3.7E-05 45.5 8.5 32 53-84 2-33 (197)
425 2ehv_A Hypothetical protein PH 88.8 0.28 9.6E-06 51.8 4.4 23 51-73 30-52 (251)
426 1s96_A Guanylate kinase, GMP k 88.8 0.2 6.9E-06 51.9 3.0 26 51-76 16-41 (219)
427 1yrb_A ATP(GTP)binding protein 88.8 0.37 1.3E-05 51.4 5.3 27 50-76 13-39 (262)
428 3exa_A TRNA delta(2)-isopenten 88.7 0.24 8.1E-06 53.7 3.6 24 52-75 4-27 (322)
429 2f1r_A Molybdopterin-guanine d 88.7 0.17 5.7E-06 50.2 2.2 26 52-77 3-28 (171)
430 1q3t_A Cytidylate kinase; nucl 88.5 0.24 8.3E-06 52.0 3.6 27 49-75 14-40 (236)
431 1p9r_A General secretion pathw 88.5 1.6 5.3E-05 49.9 10.4 93 39-149 158-251 (418)
432 2i3b_A HCR-ntpase, human cance 88.4 0.21 7.3E-06 50.4 2.8 24 53-76 3-26 (189)
433 2qmh_A HPR kinase/phosphorylas 88.2 0.25 8.7E-06 49.6 3.2 24 52-75 35-58 (205)
434 1g8f_A Sulfate adenylyltransfe 88.2 0.32 1.1E-05 56.9 4.6 45 33-77 377-421 (511)
435 1cp2_A CP2, nitrogenase iron p 88.0 0.43 1.5E-05 51.2 5.2 27 52-78 2-28 (269)
436 1sq5_A Pantothenate kinase; P- 88.0 0.3 1E-05 53.7 4.0 28 49-76 78-105 (308)
437 1cr0_A DNA primase/helicase; R 87.9 0.35 1.2E-05 52.8 4.5 36 51-86 35-71 (296)
438 3foz_A TRNA delta(2)-isopenten 87.9 0.29 1E-05 52.9 3.7 26 50-75 9-34 (316)
439 1ltq_A Polynucleotide kinase; 87.9 0.27 9.3E-06 53.8 3.6 23 52-74 3-25 (301)
440 2ocp_A DGK, deoxyguanosine kin 87.9 0.31 1.1E-05 51.4 3.9 26 51-76 2-27 (241)
441 4eaq_A DTMP kinase, thymidylat 87.8 0.31 1.1E-05 50.9 3.8 28 50-77 25-52 (229)
442 2r8r_A Sensor protein; KDPD, P 87.7 0.4 1.4E-05 49.3 4.4 27 52-78 7-33 (228)
443 3lnc_A Guanylate kinase, GMP k 87.6 0.18 6.2E-06 52.8 1.9 24 52-75 28-52 (231)
444 2fz4_A DNA repair protein RAD2 87.6 4 0.00014 42.6 12.3 39 32-75 94-132 (237)
445 4hlc_A DTMP kinase, thymidylat 87.6 0.43 1.5E-05 48.8 4.6 29 52-80 3-31 (205)
446 2p67_A LAO/AO transport system 87.5 0.73 2.5E-05 51.3 6.8 28 49-76 54-81 (341)
447 2orw_A Thymidine kinase; TMTK, 87.4 0.43 1.5E-05 47.9 4.4 25 52-76 4-28 (184)
448 3b85_A Phosphate starvation-in 87.1 0.27 9.3E-06 50.4 2.8 23 52-74 23-45 (208)
449 4gzl_A RAS-related C3 botulinu 87.1 0.36 1.2E-05 49.3 3.7 48 24-73 5-52 (204)
450 2onk_A Molybdate/tungstate ABC 87.1 0.3 1E-05 51.3 3.2 25 49-74 23-47 (240)
451 3fdi_A Uncharacterized protein 86.8 0.38 1.3E-05 49.1 3.6 25 52-76 7-31 (201)
452 2afh_E Nitrogenase iron protei 86.8 0.51 1.7E-05 51.2 5.0 27 52-78 3-29 (289)
453 3vkw_A Replicase large subunit 86.8 3.2 0.00011 47.3 11.5 25 49-73 159-183 (446)
454 4akg_A Glutathione S-transfera 86.7 1.6 5.6E-05 61.1 10.8 143 54-225 1270-1452(2695)
455 1ls1_A Signal recognition part 86.7 0.54 1.8E-05 51.2 5.0 36 50-86 97-132 (295)
456 3vr4_D V-type sodium ATPase su 86.6 0.56 1.9E-05 53.4 5.2 26 52-77 152-177 (465)
457 2dyk_A GTP-binding protein; GT 86.6 0.4 1.4E-05 46.4 3.6 23 52-74 2-24 (161)
458 1nlf_A Regulatory protein REPA 86.5 0.5 1.7E-05 51.0 4.6 25 52-76 31-55 (279)
459 2pcj_A ABC transporter, lipopr 86.5 0.3 1E-05 50.8 2.8 22 52-73 31-52 (224)
460 1oix_A RAS-related protein RAB 86.4 0.38 1.3E-05 48.5 3.4 24 51-74 29-52 (191)
461 3tif_A Uncharacterized ABC tra 86.2 0.31 1.1E-05 51.1 2.7 22 52-73 32-53 (235)
462 2axn_A 6-phosphofructo-2-kinas 86.2 0.56 1.9E-05 55.5 5.2 30 50-79 34-63 (520)
463 3eph_A TRNA isopentenyltransfe 86.0 0.43 1.5E-05 53.7 3.8 25 52-76 3-27 (409)
464 2wji_A Ferrous iron transport 85.8 0.48 1.6E-05 46.4 3.7 22 52-73 4-25 (165)
465 3cmu_A Protein RECA, recombina 85.7 0.88 3E-05 61.5 7.1 58 29-86 360-418 (2050)
466 2qi9_C Vitamin B12 import ATP- 85.7 0.4 1.4E-05 50.7 3.2 26 52-77 27-52 (249)
467 4edh_A DTMP kinase, thymidylat 85.7 0.67 2.3E-05 47.6 4.9 27 52-78 7-33 (213)
468 3cr8_A Sulfate adenylyltranfer 85.6 0.59 2E-05 55.4 4.9 27 51-77 369-395 (552)
469 3cmw_A Protein RECA, recombina 85.6 0.65 2.2E-05 61.9 5.8 100 38-143 369-470 (1706)
470 2d2e_A SUFC protein; ABC-ATPas 85.6 0.41 1.4E-05 50.7 3.2 23 52-74 30-52 (250)
471 2qm8_A GTPase/ATPase; G protei 85.5 0.95 3.2E-05 50.3 6.4 28 49-76 53-80 (337)
472 3io3_A DEHA2D07832P; chaperone 85.4 0.69 2.4E-05 51.5 5.1 28 49-76 16-43 (348)
473 4dkx_A RAS-related protein RAB 85.3 0.65 2.2E-05 47.9 4.6 20 54-73 16-35 (216)
474 2f9l_A RAB11B, member RAS onco 85.3 0.42 1.4E-05 48.5 3.1 24 51-74 5-28 (199)
475 2zu0_C Probable ATP-dependent 85.3 0.42 1.4E-05 51.2 3.2 23 52-74 47-69 (267)
476 1nij_A Hypothetical protein YJ 85.3 0.55 1.9E-05 51.8 4.2 26 50-75 3-28 (318)
477 3gfo_A Cobalt import ATP-bindi 85.2 0.37 1.3E-05 51.8 2.7 22 52-73 35-56 (275)
478 1b0u_A Histidine permease; ABC 85.1 0.38 1.3E-05 51.4 2.7 23 52-74 33-55 (262)
479 1p5z_B DCK, deoxycytidine kina 85.1 0.29 9.9E-06 52.4 1.8 27 50-76 23-49 (263)
480 1ji0_A ABC transporter; ATP bi 85.1 0.38 1.3E-05 50.6 2.7 22 52-73 33-54 (240)
481 2zej_A Dardarin, leucine-rich 85.0 0.41 1.4E-05 47.9 2.8 21 53-73 4-24 (184)
482 1sgw_A Putative ABC transporte 85.0 0.33 1.1E-05 50.0 2.1 23 52-74 36-58 (214)
483 2ce2_X GTPase HRAS; signaling 84.9 0.48 1.6E-05 45.9 3.2 22 53-74 5-26 (166)
484 1mv5_A LMRA, multidrug resista 84.9 0.42 1.4E-05 50.4 2.9 23 51-73 28-50 (243)
485 2zts_A Putative uncharacterize 84.9 0.34 1.2E-05 51.2 2.2 37 50-86 29-66 (251)
486 2pze_A Cystic fibrosis transme 84.8 0.4 1.4E-05 50.0 2.7 24 52-75 35-58 (229)
487 3tqf_A HPR(Ser) kinase; transf 84.8 0.61 2.1E-05 45.6 3.7 23 52-74 17-39 (181)
488 4g1u_C Hemin import ATP-bindin 84.8 0.4 1.4E-05 51.3 2.7 23 52-74 38-60 (266)
489 1g6h_A High-affinity branched- 84.8 0.4 1.4E-05 51.1 2.7 22 52-73 34-55 (257)
490 2olj_A Amino acid ABC transpor 84.8 0.4 1.4E-05 51.2 2.7 23 52-74 51-73 (263)
491 2ff7_A Alpha-hemolysin translo 84.7 0.41 1.4E-05 50.6 2.7 22 52-73 36-57 (247)
492 3ea0_A ATPase, para family; al 84.7 0.93 3.2E-05 47.6 5.6 29 50-78 3-32 (245)
493 2wjg_A FEOB, ferrous iron tran 84.7 0.56 1.9E-05 46.8 3.7 24 51-74 7-30 (188)
494 2ged_A SR-beta, signal recogni 84.6 0.53 1.8E-05 47.3 3.5 25 50-74 47-71 (193)
495 1tq4_A IIGP1, interferon-induc 84.6 0.44 1.5E-05 54.3 3.1 24 50-73 68-91 (413)
496 2h92_A Cytidylate kinase; ross 84.5 0.43 1.5E-05 49.3 2.8 24 52-75 4-27 (219)
497 4dzz_A Plasmid partitioning pr 84.5 0.68 2.3E-05 47.1 4.3 27 52-78 2-29 (206)
498 3thx_A DNA mismatch repair pro 84.5 1.1 3.8E-05 56.5 7.0 22 51-72 662-683 (934)
499 1z2a_A RAS-related protein RAB 84.5 0.62 2.1E-05 45.3 3.8 24 51-74 5-28 (168)
500 2v9p_A Replication protein E1; 84.5 0.49 1.7E-05 51.5 3.2 26 50-75 125-150 (305)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.3e-38 Score=403.67 Aligned_cols=469 Identities=22% Similarity=0.230 Sum_probs=341.4
Q ss_pred hccCCCccEEeecCcccCCchh-cccCCceEEEcCCCCCCCCCCCC-CCCceeEEEccCCChH-HHhhcCCCCCCCcEEE
Q 045458 399 FSKMTNLRLLGICNLKLPEGLE-CLSNKLRLLDWPGYPLKSLPPNL-QLDKTIEFKMLCSRIE-ELWKGIKSLNMLKVMK 475 (1170)
Q Consensus 399 f~~~~~Lr~L~l~~~~l~~~~~-~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~s~i~-~L~~~l~~l~~L~~L~ 475 (1170)
+.++++|+.|+++++.+.+... .-..+|++|++++|.+...++.+ .+.+|++|++++|.+. .+|..+..+++|++|+
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 253 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEE
T ss_pred hccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEE
Confidence 7788889999998887654221 22247999999999988755546 8899999999999887 5788899999999999
Q ss_pred cCCCCCCCcCCCCCCCCCccEEEeeccCCcccccccccCC-CCccEEEeeCCCCCCccCcccc-CCcccEEEecCCCCCC
Q 045458 476 VSYSQSLIKIPDFTGVPNLEKLYLEGCTRLREIHPSLLLH-SKLVILNLTGCTSLATLPGKIF-MKSVKKLVLSGCSKLK 553 (1170)
Q Consensus 476 Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l-~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~~~~~~ 553 (1170)
+++|.....+|.. .+++|++|++++|.....+|..+..+ ++|+.|++++|.....+|..+. +++|++|++++|....
T Consensus 254 Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 332 (768)
T 3rgz_A 254 ISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332 (768)
T ss_dssp CCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred CCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccC
Confidence 9998866556655 77888888888876555677777664 7788888887766556666655 7777777777776665
Q ss_pred ccccc-cCCCCCCcEEEecCccCC-ccCcchhcCC-CCCEEeccC--------------------------CCCCCcCcc
Q 045458 554 KFPKI-VGNMECLSKLLLDGTAIG-ELPLSIELLS-KLVSLDLNN--------------------------CKNFKNLPV 604 (1170)
Q Consensus 554 ~l~~~-l~~l~~L~~L~L~~~~i~-~l~~~i~~l~-~L~~L~L~~--------------------------~~~l~~lp~ 604 (1170)
.+|.. ++++++|++|++++|.+. .+|..+..++ +|+.|++++ |.....+|.
T Consensus 333 ~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~ 412 (768)
T 3rgz_A 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412 (768)
T ss_dssp ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG
T ss_pred cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCH
Confidence 66654 777777777777777764 5666555554 555555554 444445555
Q ss_pred ccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCC-ccCccccCCCCCCEEeccCCcCCccccccCCCCCCC
Q 045458 605 TISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSIT-EVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSL 683 (1170)
Q Consensus 605 ~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L 683 (1170)
.+.++++|+.|++++|......|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|...+.+|..+..+++|
T Consensus 413 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 492 (768)
T 3rgz_A 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCC
Confidence 6666677777777777666666777777777777777777776 566777777777777777777776777777777777
Q ss_pred CEEEeeCcCCCCCCccccCCCCCCcEEEccCccCC-CCCccccCCCCCcEEEecCCCCCCCC-CCcccCc----------
Q 045458 684 QSLNLSGCFKLENVPETLGQVESLEELHISGTAIR-QPPSGIFHMKNLKALYFRGCKGSPSS-TSWSRHF---------- 751 (1170)
Q Consensus 684 ~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~c~~~~~~-~~~~~~~---------- 751 (1170)
+.|++++|.....+|..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|...... ..+....
T Consensus 493 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~ 572 (768)
T 3rgz_A 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCS
T ss_pred CEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccc
Confidence 77777777776677777777777777777777776 56777777777777777777633111 1010000
Q ss_pred ------------------------------------ccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCc
Q 045458 752 ------------------------------------PFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPND 795 (1170)
Q Consensus 752 ------------------------------------~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~ 795 (1170)
.........+.+.+..|..+..+++|+.|+|++|++. +.+|..
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~-g~ip~~ 651 (768)
T 3rgz_A 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS-GYIPKE 651 (768)
T ss_dssp CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB-SCCCGG
T ss_pred ccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc-ccCCHH
Confidence 0001112224445567778888999999999999984 679999
Q ss_pred cCCCCCCCEEECcCCCCc-ccchhhhcCCCCCEeeccCccCCCcCCCC---CcccceeeccCCcCCcccCCccccccc
Q 045458 796 IGNLRSLKVLCLSNNSFV-SLPASISRLSKLECLNLNGCKKLQSLPPL---PARMRIASVNGCASLETLSDPLELNKL 869 (1170)
Q Consensus 796 l~~l~sL~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l---p~sL~~L~i~~C~~L~~l~~~~~~~~L 869 (1170)
++.+++|+.|+|++|+++ .+|..+..+++|+.|+|++|+....+|.. .++|+.|++++|+--..+|....+..+
T Consensus 652 l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~ 729 (768)
T 3rgz_A 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 729 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGS
T ss_pred HhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccC
Confidence 999999999999999999 79999999999999999999888888863 357899999998766677765554444
No 2
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.4e-39 Score=394.49 Aligned_cols=302 Identities=17% Similarity=0.146 Sum_probs=235.4
Q ss_pred ccchhhHHHHHHHHcCC-CCCeEEEEEEeCCCccHHHHHHHHHh----hhccccCceeEEEecchhhccCCcHHHHHHHH
Q 045458 31 VGIESRLEKIRFLMGTG-SSDVRMIGIWGMGGLGKTTLARVVYD----SMSYEFDGSSFLADVREKSEKEGSVISLQKQL 105 (1170)
Q Consensus 31 vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 105 (1170)
|||+.++++|.++|..+ ..++++|+|+||||+||||||+++|+ +++.+|+.++|+. ++.... ..+..+++++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~--~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAP--KSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCST--THHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCCC--CCHHHHHHHH
Confidence 49999999999999654 34689999999999999999999996 6889999999985 443321 2347889999
Q ss_pred HHHHhhcCC-Ccccc-----chhhHHHHHHhhCCC-eEEEEEeCCCCHHHHHHhhcCcCCCCCCcEEEEEeCCchhhhhh
Q 045458 106 LSNLLKLGD-ISIWH-----VEDGINIIGSRLRQK-KVLLIIDDVADVEQLQSLAGKRDWFGPGSRILITTRDKQLLVAH 178 (1170)
Q Consensus 106 l~~l~~~~~-~~~~~-----~~~~~~~i~~~L~~k-~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~ 178 (1170)
+.++..... ....+ .......+++.|+++ |+||||||||+.+++ .+.. .+||+||||||++.++..+
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~ 281 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAA 281 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGC
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHc
Confidence 999874322 11222 233478899999996 999999999999876 3322 2799999999999987765
Q ss_pred CCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHHHHhhcCCCHHHHHHHHH-HhhcC
Q 045458 179 EVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVLGSFLIGRTADLWRSALE-RLKRD 257 (1170)
Q Consensus 179 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L~~~~~~~w~~~l~-~l~~~ 257 (1170)
+. ...+|+|++|+.+||++||.++||.... .+...+++.+|+++|+|+|||++++|+.|+.+.. +|...+. .+...
T Consensus 282 ~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~ 358 (549)
T 2a5y_B 282 SQ-TCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESR 358 (549)
T ss_dssp CS-CEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHH
T ss_pred CC-CCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhcc
Confidence 42 2247999999999999999999986543 3577889999999999999999999999987742 3323332 23322
Q ss_pred CCchHHHHHHhhccCCChhhhhHhh-----------hhcccccccCHHHHHHHHhhC--CCCccc-----------hhhh
Q 045458 258 PSYKIMSILQISFDGLQGSEKKIFL-----------DVACFFKRWDRDYVAEILEGC--GFSPVI-----------GLEV 313 (1170)
Q Consensus 258 ~~~~i~~~l~~sy~~L~~~~k~~fl-----------~~a~f~~~~~~~~l~~~~~~~--g~~~~~-----------~l~~ 313 (1170)
+...+..++++||+.||+..|.||+ |||+||++++.+ +.+|.++ |++... .++.
T Consensus 359 ~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~ 436 (549)
T 2a5y_B 359 GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKR 436 (549)
T ss_dssp CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHH
T ss_pred cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHH
Confidence 4556888899999999999999998 999999998766 7789988 776533 3899
Q ss_pred hhcccceeeeCC---CceechHHHHHHHHHHHhccC
Q 045458 314 LIERSLLTVDED---NTLGMHDLLQELGQLIVARQS 346 (1170)
Q Consensus 314 L~~~sLi~~~~~---~~~~mH~li~~~~~~i~~~~~ 346 (1170)
|+++|||+.... .+|.|||++|+||++++.+++
T Consensus 437 L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 437 LSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp TTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 999999998643 469999999999999887654
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.3e-37 Score=396.78 Aligned_cols=480 Identities=21% Similarity=0.230 Sum_probs=336.0
Q ss_pred hhccCCCccEEeecCcccCC----ch-hcccCCceEEEcCCCCCCCCCCC----C-CCCceeEEEccCCChHHHhhcCCC
Q 045458 398 AFSKMTNLRLLGICNLKLPE----GL-ECLSNKLRLLDWPGYPLKSLPPN----L-QLDKTIEFKMLCSRIEELWKGIKS 467 (1170)
Q Consensus 398 ~f~~~~~Lr~L~l~~~~l~~----~~-~~l~~~Lr~L~l~~~~l~~lp~~----~-~l~~L~~L~L~~s~i~~L~~~l~~ 467 (1170)
.+.++++|++|+++++.+.. .+ ..+ .+|++|++++|.++..+.. + .+.+|++|++++|.+..... ...
T Consensus 121 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~ 198 (768)
T 3rgz_A 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKL-NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSR 198 (768)
T ss_dssp GGGGCTTCCEEECCSSEEECCSSCCSCCCC-TTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTT
T ss_pred HHhCCCCCCEEECcCCccCCcCCHHHhccC-CCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC-ccc
Confidence 67888888888888876532 22 223 4688888888877655432 2 67777777777777664322 366
Q ss_pred CCCCcEEEcCCCCCCCcCCCCCCCCCccEEEeeccCCcccccccccCCCCccEEEeeCCCCCCccCccccCCcccEEEec
Q 045458 468 LNMLKVMKVSYSQSLIKIPDFTGVPNLEKLYLEGCTRLREIHPSLLLHSKLVILNLTGCTSLATLPGKIFMKSVKKLVLS 547 (1170)
Q Consensus 468 l~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~ 547 (1170)
+++|++|++++|.....+|.+..+++|++|++++|.....++..+..+++|++|++++|.....+|.. .+++|++|+++
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~ 277 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLA 277 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECC
T ss_pred CCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEECc
Confidence 77777777777776666666777777777777777655566777777777777777776554444432 45556666665
Q ss_pred CCCCCCccccccCCC-CCCcEEEecCccCC-ccCcchhcCCCCCEEeccCCCCCCcCccc-cCCCCcccEEEeeCCC---
Q 045458 548 GCSKLKKFPKIVGNM-ECLSKLLLDGTAIG-ELPLSIELLSKLVSLDLNNCKNFKNLPVT-ISSLKCLRSLVLSGCS--- 621 (1170)
Q Consensus 548 ~~~~~~~l~~~l~~l-~~L~~L~L~~~~i~-~l~~~i~~l~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~L~~~~--- 621 (1170)
+|.....+|..+... ++|++|++++|.+. .+|..+..+++|+.|++++|.....+|.. +..+++|++|++++|.
T Consensus 278 ~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~ 357 (768)
T 3rgz_A 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357 (768)
T ss_dssp SSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEE
T ss_pred CCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCc
Confidence 555444455544443 55555555555553 44455555555555555555444344433 4455555555555544
Q ss_pred ----------------------CCCCcchhhcC--CcccCeEeccCcCCC-ccCccccCCCCCCEEeccCCcCCcccccc
Q 045458 622 ----------------------KLKKFPEIVES--MEDLSELFLDGTSIT-EVPSSIELLTGLNVLNLNDCKNLVRIPDS 676 (1170)
Q Consensus 622 ----------------------~~~~~p~~~~~--l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~ 676 (1170)
.....|..+.. +++|+.|++++|.+. .+|..+..+++|+.|++++|...+.+|..
T Consensus 358 ~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 437 (768)
T 3rgz_A 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 437 (768)
T ss_dssp CCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred cccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH
Confidence 33334444433 566777777777776 67788888899999999998888888888
Q ss_pred CCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCC-CCCccccCCCCCcEEEecCCCCCCC-CCCcccCcccc
Q 045458 677 INGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIR-QPPSGIFHMKNLKALYFRGCKGSPS-STSWSRHFPFN 754 (1170)
Q Consensus 677 l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~c~~~~~-~~~~~~~~~l~ 754 (1170)
+..+++|+.|++++|.....+|..+..+++|+.|++++|.++ .+|..+..+++|++|++++|+.... +..+.....+.
T Consensus 438 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 517 (768)
T 3rgz_A 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCC
Confidence 888999999999999888888888888999999999999888 6788888999999999999987633 33445566778
Q ss_pred cccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCc-----------------------------------------
Q 045458 755 LIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIP----------------------------------------- 793 (1170)
Q Consensus 755 ~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~----------------------------------------- 793 (1170)
.+.++.|.+...+|..+..+++|+.|++++|++. +.+|
T Consensus 518 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (768)
T 3rgz_A 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN-GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596 (768)
T ss_dssp EEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE-SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEEC
T ss_pred EEECCCCcccCcCCHHHcCCCCCCEEECCCCccC-CcCChHHhcccchhhhhcccccccccccccccccccccccccccc
Confidence 8888888888889999999999999999998763 2222
Q ss_pred -----------------------------CccCCCCCCCEEECcCCCCc-ccchhhhcCCCCCEeeccCccCCCcCCCC-
Q 045458 794 -----------------------------NDIGNLRSLKVLCLSNNSFV-SLPASISRLSKLECLNLNGCKKLQSLPPL- 842 (1170)
Q Consensus 794 -----------------------------~~l~~l~sL~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l- 842 (1170)
..++.+++|+.|+|++|+++ .+|..++.+++|+.|+|++|.....+|.-
T Consensus 597 ~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l 676 (768)
T 3rgz_A 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676 (768)
T ss_dssp TTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred ccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHH
Confidence 33555788999999999998 78999999999999999999888788862
Q ss_pred --CcccceeeccCCcCCcccCCc-ccccccccceeeccCcccccC
Q 045458 843 --PARMRIASVNGCASLETLSDP-LELNKLKDFEIQCMDCVKLQG 884 (1170)
Q Consensus 843 --p~sL~~L~i~~C~~L~~l~~~-~~~~~L~~l~i~~~~c~~l~~ 884 (1170)
.++|+.|+++++.--..+|.. ..++.|+.+++ ..+++.|
T Consensus 677 ~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l---s~N~l~g 718 (768)
T 3rgz_A 677 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL---SNNNLSG 718 (768)
T ss_dssp GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC---CSSEEEE
T ss_pred hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC---cCCcccc
Confidence 357899999988655455542 23444554444 3445544
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9.5e-35 Score=361.84 Aligned_cols=459 Identities=20% Similarity=0.205 Sum_probs=289.7
Q ss_pred hcchhhhccCCCccEEeecCccc----CCchhcccCCceEEEcCCCCCCCCC-CCC-CCCceeEEEccCCChHHH-hhcC
Q 045458 393 WASAKAFSKMTNLRLLGICNLKL----PEGLECLSNKLRLLDWPGYPLKSLP-PNL-QLDKTIEFKMLCSRIEEL-WKGI 465 (1170)
Q Consensus 393 ~~~~~~f~~~~~Lr~L~l~~~~l----~~~~~~l~~~Lr~L~l~~~~l~~lp-~~~-~l~~L~~L~L~~s~i~~L-~~~l 465 (1170)
.+.+.+|.++++|++|+++++.+ +..+..++ +|++|++++|.+..++ ..+ .+.+|++|++++|.+..+ +..+
T Consensus 47 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~ 125 (606)
T 3t6q_A 47 TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQH-RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPL 125 (606)
T ss_dssp EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCC
T ss_pred cCChhHhccCccceEEECCCCccceeChhhccCcc-ccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchh
Confidence 35567899999999999999875 34455554 7999999999998874 455 899999999999999988 6789
Q ss_pred CCCCCCcEEEcCCCCCCC-cCCCCCCCCCccEEEeeccCCcccccccccCCCCcc--EEEeeCCCCCCccCccccCCccc
Q 045458 466 KSLNMLKVMKVSYSQSLI-KIPDFTGVPNLEKLYLEGCTRLREIHPSLLLHSKLV--ILNLTGCTSLATLPGKIFMKSVK 542 (1170)
Q Consensus 466 ~~l~~L~~L~Ls~~~~l~-~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~--~L~L~~c~~l~~lp~~~~l~~L~ 542 (1170)
..+++|++|++++|.... ..|.+..+++|++|++++|......+..+..+++|+ .|++++|......|..+...+|+
T Consensus 126 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~ 205 (606)
T 3t6q_A 126 HNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQ 205 (606)
T ss_dssp TTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEE
T ss_pred ccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhcccc
Confidence 999999999999998655 347777799999999999866555567788999999 88999876655555444455566
Q ss_pred EEEecCCCCCCcc--------------------------ccccCCCC--CCcEEEecCccCCccCcc-hhcCCCCCEEec
Q 045458 543 KLVLSGCSKLKKF--------------------------PKIVGNME--CLSKLLLDGTAIGELPLS-IELLSKLVSLDL 593 (1170)
Q Consensus 543 ~L~L~~~~~~~~l--------------------------~~~l~~l~--~L~~L~L~~~~i~~l~~~-i~~l~~L~~L~L 593 (1170)
.|++++|...... +..+..+. +|+.|+++++.+..++.. +..+++|+.|++
T Consensus 206 ~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 285 (606)
T 3t6q_A 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDL 285 (606)
T ss_dssp EEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEEC
T ss_pred ccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEec
Confidence 6666555311100 00111111 344555555555444432 444555555555
Q ss_pred cCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCC-ccCcc-ccCCCCCCEEeccCCcCCc
Q 045458 594 NNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSIT-EVPSS-IELLTGLNVLNLNDCKNLV 671 (1170)
Q Consensus 594 ~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~-~lp~~-i~~l~~L~~L~L~~~~~l~ 671 (1170)
++|.. ..+|..+..+++|++|++++|......|..+..+++|+.|++++|.+. .+|.. +..+++|+.|++++|....
T Consensus 286 ~~n~l-~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 364 (606)
T 3t6q_A 286 TATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364 (606)
T ss_dssp TTSCC-SCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCE
T ss_pred cCCcc-CCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccc
Confidence 55432 244444555555555555555444444444555555555555555444 33322 4455555555555544433
Q ss_pred cc--cccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCC--CccccCCCCCcEEEecCCCCCCC-CCC
Q 045458 672 RI--PDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQP--PSGIFHMKNLKALYFRGCKGSPS-STS 746 (1170)
Q Consensus 672 ~l--p~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~l--p~~l~~l~~L~~L~L~~c~~~~~-~~~ 746 (1170)
.. +..+..+++|++|++++|......|..+..+++|+.|++++|.++.. +..+..+++|++|++++|..... ...
T Consensus 365 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 444 (606)
T 3t6q_A 365 SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444 (606)
T ss_dssp EEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTT
T ss_pred ccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHH
Confidence 32 34444555555555555544434444444555555555555554432 12244455555555555543321 112
Q ss_pred cccCcccccccccCCCCcc---cCCCCCCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCcc-cchhhhcC
Q 045458 747 WSRHFPFNLIKRSLDPVAF---SFPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVS-LPASISRL 822 (1170)
Q Consensus 747 ~~~~~~l~~~~~~~~~~~~---~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~-lp~~i~~l 822 (1170)
+.....+..+.++.+.+.. ..+..+..+++|+.|++++|.+. +..|..+..+++|+.|+|++|+++. .|..+..+
T Consensus 445 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 523 (606)
T 3t6q_A 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS-SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523 (606)
T ss_dssp TTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTC
T ss_pred HhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccC-ccChhhhccccCCCEEECCCCccCcCChhHhCcc
Confidence 2233334444444444433 23355788999999999999985 5667889999999999999999985 45788999
Q ss_pred CCCCEeeccCccCCCcCCCC---CcccceeeccCCc
Q 045458 823 SKLECLNLNGCKKLQSLPPL---PARMRIASVNGCA 855 (1170)
Q Consensus 823 ~~L~~L~L~~c~~L~~lp~l---p~sL~~L~i~~C~ 855 (1170)
++| .|++++|+.....|.. .++|+.|++.+|+
T Consensus 524 ~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 524 KGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp CSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred ccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 999 9999998655433332 2467888888775
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.3e-34 Score=355.93 Aligned_cols=448 Identities=19% Similarity=0.160 Sum_probs=286.9
Q ss_pred EEeecCcccCCchhcccCCceEEEcCCCCCCCCCC-CC-CCCceeEEEccCCChHHH-hhcCCCCCCCcEEEcCCCCCCC
Q 045458 407 LLGICNLKLPEGLECLSNKLRLLDWPGYPLKSLPP-NL-QLDKTIEFKMLCSRIEEL-WKGIKSLNMLKVMKVSYSQSLI 483 (1170)
Q Consensus 407 ~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~s~i~~L-~~~l~~l~~L~~L~Ls~~~~l~ 483 (1170)
.++.++..+..-+..+|..+++|+++++.++.+++ .| .+.+|++|++++|.+..+ |..+..+++|++|++++|....
T Consensus 16 ~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~ 95 (606)
T 3t6q_A 16 TYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF 95 (606)
T ss_dssp EEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSE
T ss_pred eEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccc
Confidence 34444544444445567778888888888887744 45 788888888888888766 5678888888888888887655
Q ss_pred cCC-CCCCCCCccEEEeeccCCcccccccccCCCCccEEEeeCCCCCC-ccCccccCCcccEEEecCCCCCCccccccCC
Q 045458 484 KIP-DFTGVPNLEKLYLEGCTRLREIHPSLLLHSKLVILNLTGCTSLA-TLPGKIFMKSVKKLVLSGCSKLKKFPKIVGN 561 (1170)
Q Consensus 484 ~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~-~lp~~~~l~~L~~L~L~~~~~~~~l~~~l~~ 561 (1170)
..| .|+++++|++|++++|......+..+..+++|++|++++|.... ..|....+++|++|++++|......+..++.
T Consensus 96 ~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 175 (606)
T 3t6q_A 96 MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS 175 (606)
T ss_dssp ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHT
T ss_pred cChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhh
Confidence 545 37888888888888875444446677888888888888865544 3355555888888888888776666777788
Q ss_pred CCCCc--EEEecCccCCccCcchhcCCCCCEEeccCCCCCCcC--------------------------ccccCCCC--c
Q 045458 562 MECLS--KLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNL--------------------------PVTISSLK--C 611 (1170)
Q Consensus 562 l~~L~--~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~l--------------------------p~~l~~l~--~ 611 (1170)
+.+|+ .|++++|.+..++.......+|+.|++++|...... +..+..+. +
T Consensus 176 l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~ 255 (606)
T 3t6q_A 176 LQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255 (606)
T ss_dssp TTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSE
T ss_pred hcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCc
Confidence 88888 788888888777665555566777776665421110 00111111 5
Q ss_pred ccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCc
Q 045458 612 LRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGC 691 (1170)
Q Consensus 612 L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c 691 (1170)
|+.|++++|......+..+..+++|+.|++++|.+.++|..+..+++|+.|++++|......|..+..+++|++|++++|
T Consensus 256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 335 (606)
T 3t6q_A 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335 (606)
T ss_dssp EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSC
T ss_pred eeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCC
Confidence 66666666665555555566667777777777777666666666677777777766655555656666667777777766
Q ss_pred CCCCCCcc-ccCCCCCCcEEEccCccCCCC---CccccCCCCCcEEEecCCCCCCC-CCCcccCcccccccccCCCCccc
Q 045458 692 FKLENVPE-TLGQVESLEELHISGTAIRQP---PSGIFHMKNLKALYFRGCKGSPS-STSWSRHFPFNLIKRSLDPVAFS 766 (1170)
Q Consensus 692 ~~l~~l~~-~l~~l~~L~~L~L~~~~i~~l---p~~l~~l~~L~~L~L~~c~~~~~-~~~~~~~~~l~~~~~~~~~~~~~ 766 (1170)
.....++. .+..+++|++|++++|.++.. +..+..+++|++|++++|..... ...+.....+..+.++.+.+...
T Consensus 336 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 415 (606)
T 3t6q_A 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415 (606)
T ss_dssp SSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECC
T ss_pred CcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCc
Confidence 55544433 356666677777766666644 44566666667777666653321 22233334455555555555444
Q ss_pred CCCC-CCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCcc--cc--hhhhcCCCCCEeeccCccCCCcCCC
Q 045458 767 FPPS-LSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVS--LP--ASISRLSKLECLNLNGCKKLQSLPP 841 (1170)
Q Consensus 767 lp~~-l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~--lp--~~i~~l~~L~~L~L~~c~~L~~lp~ 841 (1170)
.+.. +..+++|+.|++++|.+. +..|..+..+++|+.|++++|.+.. +| ..+..+++|+.|++++|......|.
T Consensus 416 ~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 494 (606)
T 3t6q_A 416 DAQSPFQNLHLLKVLNLSHSLLD-ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494 (606)
T ss_dssp TTCCTTTTCTTCCEEECTTCCCB-TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTT
T ss_pred ccchhhhCcccCCEEECCCCccC-CcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChh
Confidence 4333 666677777777777663 3445566667777777777776653 22 3466667777777776654333332
Q ss_pred ---CCcccceeeccCCc
Q 045458 842 ---LPARMRIASVNGCA 855 (1170)
Q Consensus 842 ---lp~sL~~L~i~~C~ 855 (1170)
-.++|+.|++++|.
T Consensus 495 ~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 495 AFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp TTTTCTTCCEEECCSSC
T ss_pred hhccccCCCEEECCCCc
Confidence 12466666666663
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.3e-34 Score=356.97 Aligned_cols=428 Identities=21% Similarity=0.229 Sum_probs=302.3
Q ss_pred cchhhhccCCCccEEeecCcccC----CchhcccCCceEEEcCCCCCCCC-CCCC-CCCceeEEEccCCChHHHh-hcCC
Q 045458 394 ASAKAFSKMTNLRLLGICNLKLP----EGLECLSNKLRLLDWPGYPLKSL-PPNL-QLDKTIEFKMLCSRIEELW-KGIK 466 (1170)
Q Consensus 394 ~~~~~f~~~~~Lr~L~l~~~~l~----~~~~~l~~~Lr~L~l~~~~l~~l-p~~~-~l~~L~~L~L~~s~i~~L~-~~l~ 466 (1170)
+...+|.++++|++|+++++.+. ..+..+ .+|++|++++|.++.+ |..| .+.+|++|++++|.+..++ ..+.
T Consensus 47 ~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 125 (606)
T 3vq2_A 47 LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGL-HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIG 125 (606)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC-TTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCT
T ss_pred eChhhccCCccCcEEeCCCCcccccCHHHhhch-hhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccC
Confidence 45567888888888888887643 234444 3688888888888887 5556 8888888888888888776 6688
Q ss_pred CCCCCcEEEcCCCCCCC-cCCC-CCCCCCccEEEeeccCCcccccccccCCCCcc----EEEeeCCCCCCccCcccc-CC
Q 045458 467 SLNMLKVMKVSYSQSLI-KIPD-FTGVPNLEKLYLEGCTRLREIHPSLLLHSKLV----ILNLTGCTSLATLPGKIF-MK 539 (1170)
Q Consensus 467 ~l~~L~~L~Ls~~~~l~-~~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~----~L~L~~c~~l~~lp~~~~-l~ 539 (1170)
.+++|++|++++|.... .+|. ++++++|++|++++|......+..+..+.+|+ .|++++|. +..++.... ..
T Consensus 126 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~-l~~~~~~~~~~~ 204 (606)
T 3vq2_A 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP-IDFIQDQAFQGI 204 (606)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCC-CCEECTTTTTTC
T ss_pred CCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCC-cceeCcccccCc
Confidence 88888888888887543 4454 78888888888888755444445555554443 67777754 334443333 45
Q ss_pred cccEEEecCCCCC----------------------------------------------------------CccccccCC
Q 045458 540 SVKKLVLSGCSKL----------------------------------------------------------KKFPKIVGN 561 (1170)
Q Consensus 540 ~L~~L~L~~~~~~----------------------------------------------------------~~l~~~l~~ 561 (1170)
+|+.|++++|... ...|. +..
T Consensus 205 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~ 283 (606)
T 3vq2_A 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHC 283 (606)
T ss_dssp EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGG
T ss_pred eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-ccc
Confidence 7777877776532 11222 455
Q ss_pred CCCCcEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEec
Q 045458 562 MECLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFL 641 (1170)
Q Consensus 562 l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l 641 (1170)
+++|+.|+++++.+..+| .+..+++|+.|++++|.. ..+| .+ .+++|+.|++++|...... .+..+++|+.|++
T Consensus 284 l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 357 (606)
T 3vq2_A 284 LANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDL 357 (606)
T ss_dssp GTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEEC
T ss_pred CCCCCEEEecCccchhhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEEC
Confidence 667777777777777776 666777777777777765 6666 34 7777777777777544433 4456777777777
Q ss_pred cCcCCCcc---CccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCc-cccCCCCCCcEEEccCccC
Q 045458 642 DGTSITEV---PSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVP-ETLGQVESLEELHISGTAI 717 (1170)
Q Consensus 642 ~~~~l~~l---p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~-~~l~~l~~L~~L~L~~~~i 717 (1170)
++|.+... |..+..+++|+.|++++|. +..+|..+..+++|+.|++++|......+ ..+..+++|+.|++++|.+
T Consensus 358 s~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 436 (606)
T 3vq2_A 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436 (606)
T ss_dssp CSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC
T ss_pred cCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC
Confidence 77776654 6666777777777777766 34455667777777777777776555555 4666777777777777776
Q ss_pred CC-CCccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcc-cCCCCCCCCCCcCEEeccCCCCCCCCCcCc
Q 045458 718 RQ-PPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAF-SFPPSLSGLYSLTKLDLSDCDLGEGFIPND 795 (1170)
Q Consensus 718 ~~-lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~-~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~ 795 (1170)
+. .|..+..+++|++|++++|.. .. .+|..+..+++|+.|++++|++. +..|..
T Consensus 437 ~~~~~~~~~~l~~L~~L~l~~n~l-----------------------~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~ 492 (606)
T 3vq2_A 437 KIDFDGIFLGLTSLNTLKMAGNSF-----------------------KDNTLSNVFANTTNLTFLDLSKCQLE-QISWGV 492 (606)
T ss_dssp EECCTTTTTTCTTCCEEECTTCEE-----------------------GGGEECSCCTTCTTCCEEECTTSCCC-EECTTT
T ss_pred CccchhhhcCCCCCCEEECCCCcC-----------------------CCcchHHhhccCCCCCEEECCCCcCC-ccChhh
Confidence 64 455666777777777777652 22 25667888999999999999885 566778
Q ss_pred cCCCCCCCEEECcCCCCccc-chhhhcCCCCCEeeccCccCCCcCCC----CCcccceeeccCCcC
Q 045458 796 IGNLRSLKVLCLSNNSFVSL-PASISRLSKLECLNLNGCKKLQSLPP----LPARMRIASVNGCAS 856 (1170)
Q Consensus 796 l~~l~sL~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~----lp~sL~~L~i~~C~~ 856 (1170)
+..+++|+.|+|++|+++.+ |..+..+++|+.|+|++|+ ++.+|. +|.+|+.|++.+++-
T Consensus 493 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCC
T ss_pred hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCCc
Confidence 89999999999999999876 7788899999999999986 667775 455788999888753
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.1e-34 Score=358.68 Aligned_cols=462 Identities=16% Similarity=0.103 Sum_probs=352.9
Q ss_pred CCccEEeecCcccCC----chhcccCCceEEEcCCCCCCCCCC-CC-CCCceeEEEccCCChHHH-hhcCCCCCCCcEEE
Q 045458 403 TNLRLLGICNLKLPE----GLECLSNKLRLLDWPGYPLKSLPP-NL-QLDKTIEFKMLCSRIEEL-WKGIKSLNMLKVMK 475 (1170)
Q Consensus 403 ~~Lr~L~l~~~~l~~----~~~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~s~i~~L-~~~l~~l~~L~~L~ 475 (1170)
++|+.|+++++.+.. .+..+ .+|++|++++|.++.+++ .| .+.+|++|++++|.+..+ |..+..+++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNF-SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCC-ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 678999998887532 34444 379999999999888855 45 888999999999988887 77888999999999
Q ss_pred cCCCCCCCcCC-CCCCCCCccEEEeeccCCcc-cccccccCCCCccEEEeeCCCCCCccCcccc-CCcc----cEEEecC
Q 045458 476 VSYSQSLIKIP-DFTGVPNLEKLYLEGCTRLR-EIHPSLLLHSKLVILNLTGCTSLATLPGKIF-MKSV----KKLVLSG 548 (1170)
Q Consensus 476 Ls~~~~l~~~~-~~~~l~~L~~L~L~~~~~l~-~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L----~~L~L~~ 548 (1170)
+++|......+ .++++++|++|++++|.... .+|..+..+++|++|++++|......+..+. +++| .+|++++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 99887544442 48889999999999886544 5688889999999999998765444444443 4444 4799988
Q ss_pred CCCCCccccccCCCCCCcEEEecCccCC--ccCcchhcCCCCCEEecc--------------------------------
Q 045458 549 CSKLKKFPKIVGNMECLSKLLLDGTAIG--ELPLSIELLSKLVSLDLN-------------------------------- 594 (1170)
Q Consensus 549 ~~~~~~l~~~l~~l~~L~~L~L~~~~i~--~l~~~i~~l~~L~~L~L~-------------------------------- 594 (1170)
|......+..+. ..+|++|++++|.+. ..|..+..+++|+.+++.
T Consensus 191 n~l~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 269 (606)
T 3vq2_A 191 NPIDFIQDQAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269 (606)
T ss_dssp CCCCEECTTTTT-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred CCcceeCccccc-CceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence 875544444444 448999999988773 455666677776666552
Q ss_pred -CCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCccc
Q 045458 595 -NCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRI 673 (1170)
Q Consensus 595 -~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~l 673 (1170)
.+......|. +..+++|+.|+++++.. ..+| .+..+++|+.|++++|.+..+|. + .+++|+.|++++|......
T Consensus 270 ~~~~~~~~~~~-~~~l~~L~~L~l~~~~~-~~l~-~l~~~~~L~~L~l~~n~l~~lp~-~-~l~~L~~L~l~~n~~~~~~ 344 (606)
T 3vq2_A 270 YTNDFSDDIVK-FHCLANVSAMSLAGVSI-KYLE-DVPKHFKWQSLSIIRCQLKQFPT-L-DLPFLKSLTLTMNKGSISF 344 (606)
T ss_dssp CCTTCCGGGGS-CGGGTTCSEEEEESCCC-CCCC-CCCTTCCCSEEEEESCCCSSCCC-C-CCSSCCEEEEESCSSCEEC
T ss_pred ccccccccccc-cccCCCCCEEEecCccc-hhhh-hccccccCCEEEcccccCccccc-C-CCCccceeeccCCcCccch
Confidence 2222333443 77788899999998876 4556 77888899999999999988884 4 8899999999998766655
Q ss_pred cccCCCCCCCCEEEeeCcCCCCC--CccccCCCCCCcEEEccCccCCCCCccccCCCCCcEEEecCCCCCCCC--CCccc
Q 045458 674 PDSINGLKSLQSLNLSGCFKLEN--VPETLGQVESLEELHISGTAIRQPPSGIFHMKNLKALYFRGCKGSPSS--TSWSR 749 (1170)
Q Consensus 674 p~~l~~l~~L~~L~L~~c~~l~~--l~~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~~~~~--~~~~~ 749 (1170)
.+..+++|+.|++++|..... .+..+..+++|+.|++++|.++.+|..+..+++|+.|++++|...... ..+..
T Consensus 345 --~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 422 (606)
T 3vq2_A 345 --KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLS 422 (606)
T ss_dssp --CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTT
T ss_pred --hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhc
Confidence 466889999999998865433 367778889999999999999988888889999999999998754432 34556
Q ss_pred CcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCccc-chhhhcCCCCCEe
Q 045458 750 HFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVSL-PASISRLSKLECL 828 (1170)
Q Consensus 750 ~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~l-p~~i~~l~~L~~L 828 (1170)
...+..+.++.+.+....|..+..+++|+.|++++|.+....+|..++.+++|+.|++++|.++.+ |..+..+++|+.|
T Consensus 423 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 502 (606)
T 3vq2_A 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502 (606)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEE
Confidence 667778888888888888889999999999999999986545788899999999999999999876 5678999999999
Q ss_pred eccCccCCCcCCC---CCcccceeeccCCcCCcccCCcc-ccc-cccccee
Q 045458 829 NLNGCKKLQSLPP---LPARMRIASVNGCASLETLSDPL-ELN-KLKDFEI 874 (1170)
Q Consensus 829 ~L~~c~~L~~lp~---lp~sL~~L~i~~C~~L~~l~~~~-~~~-~L~~l~i 874 (1170)
+|++|+.....|. -.++|+.|++++|. +++++... .++ +|+.+++
T Consensus 503 ~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l 552 (606)
T 3vq2_A 503 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNL 552 (606)
T ss_dssp ECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEEC
T ss_pred ECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEc
Confidence 9999976554453 23579999999985 77776542 232 3554443
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.3e-32 Score=345.00 Aligned_cols=478 Identities=19% Similarity=0.186 Sum_probs=327.2
Q ss_pred hcchhhhccCCCccEEeecCcccCC----chhcccCCceEEEcCCCCCCCCCCC-C-CCCceeEEEccCCChHHHh-hcC
Q 045458 393 WASAKAFSKMTNLRLLGICNLKLPE----GLECLSNKLRLLDWPGYPLKSLPPN-L-QLDKTIEFKMLCSRIEELW-KGI 465 (1170)
Q Consensus 393 ~~~~~~f~~~~~Lr~L~l~~~~l~~----~~~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~s~i~~L~-~~l 465 (1170)
.+...+|.++++|++|+++++.+.. .+..++ +|++|++++|.++.+|.. | .+.+|++|++++|.+..++ ..+
T Consensus 39 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 117 (680)
T 1ziw_A 39 RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLP-MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF 117 (680)
T ss_dssp CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCT-TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTT
T ss_pred CcCHHHHhCCCcCcEEECCCCccCccCHHHHhccc-CcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHc
Confidence 3556789999999999999887543 345554 799999999999999985 5 8999999999999998886 568
Q ss_pred CCCCCCcEEEcCCCCCCCcCCC-CCCCCCccEEEeeccCCcccccccc--cCCCCccEEEeeCCCCCCccCcccc-C---
Q 045458 466 KSLNMLKVMKVSYSQSLIKIPD-FTGVPNLEKLYLEGCTRLREIHPSL--LLHSKLVILNLTGCTSLATLPGKIF-M--- 538 (1170)
Q Consensus 466 ~~l~~L~~L~Ls~~~~l~~~~~-~~~l~~L~~L~L~~~~~l~~~~~~i--~~l~~L~~L~L~~c~~l~~lp~~~~-l--- 538 (1170)
..+++|++|++++|......|. +.++++|++|++++|......+..+ ..+++|+.|++++|......|..+. +
T Consensus 118 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 197 (680)
T 1ziw_A 118 VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRL 197 (680)
T ss_dssp TTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEE
T ss_pred cccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhh
Confidence 9999999999999986655554 7889999999999975433333333 3568899999998754433333221 2
Q ss_pred ------------------------CcccEEEecCCCCCCccccccCCCCC--CcEEEecCccCCccC-cchhcCCCCCEE
Q 045458 539 ------------------------KSVKKLVLSGCSKLKKFPKIVGNMEC--LSKLLLDGTAIGELP-LSIELLSKLVSL 591 (1170)
Q Consensus 539 ------------------------~~L~~L~L~~~~~~~~l~~~l~~l~~--L~~L~L~~~~i~~l~-~~i~~l~~L~~L 591 (1170)
++|+.|++++|......|..+.++.. |++|++++|.+..++ ..+..+++|+.|
T Consensus 198 ~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 277 (680)
T 1ziw_A 198 FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYF 277 (680)
T ss_dssp CEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred hhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEe
Confidence 56777777777766666777777654 888888888887664 567888888888
Q ss_pred eccCCCCCCcCccccCCCCcccEEEeeCCCCCC-----Ccch----hhcCCcccCeEeccCcCCCccC-ccccCCCCCCE
Q 045458 592 DLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLK-----KFPE----IVESMEDLSELFLDGTSITEVP-SSIELLTGLNV 661 (1170)
Q Consensus 592 ~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~-----~~p~----~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~ 661 (1170)
++++|......|..+..+++|+.|++++|.... .+|. .+..+++|+.|++++|.+..++ ..+..+++|+.
T Consensus 278 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 357 (680)
T 1ziw_A 278 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKY 357 (680)
T ss_dssp ECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCE
T ss_pred eCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcE
Confidence 888887777777778888888888887654322 2332 5667788888888888887654 44677888888
Q ss_pred EeccCCcC-Cccccc-cCC--CCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCC-CC-ccccCCCCCcEEEe
Q 045458 662 LNLNDCKN-LVRIPD-SIN--GLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQ-PP-SGIFHMKNLKALYF 735 (1170)
Q Consensus 662 L~L~~~~~-l~~lp~-~l~--~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~-lp-~~l~~l~~L~~L~L 735 (1170)
|++++|.. ...++. .+. ..++|+.|++++|......|..+..+++|+.|++++|.+.. +| ..+..+++|++|++
T Consensus 358 L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L 437 (680)
T 1ziw_A 358 LSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437 (680)
T ss_dssp EECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEEC
T ss_pred EECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEec
Confidence 88877753 222222 111 12467777777776655566667777777777777777752 43 45667777777777
Q ss_pred cCCCCCC-CCCCcccCcccccccccCCCCc--ccCCCCCCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCC
Q 045458 736 RGCKGSP-SSTSWSRHFPFNLIKRSLDPVA--FSFPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSF 812 (1170)
Q Consensus 736 ~~c~~~~-~~~~~~~~~~l~~~~~~~~~~~--~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l 812 (1170)
++|+... ....+.....+..+.+..+.+. ...|..+..+++|+.|++++|++. +..+..+..+++|+.|++++|.+
T Consensus 438 s~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l 516 (680)
T 1ziw_A 438 SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA-NINDDMLEGLEKLEILDLQHNNL 516 (680)
T ss_dssp CSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC-cCChhhhccccccCEEeCCCCCc
Confidence 7776332 1222333334444444444443 345666777777888888887774 34455577777788888887777
Q ss_pred cccch---------hhhcCCCCCEeeccCccCCCcCCC----CCcccceeeccCCcCCcccCCc--cccccccccee
Q 045458 813 VSLPA---------SISRLSKLECLNLNGCKKLQSLPP----LPARMRIASVNGCASLETLSDP--LELNKLKDFEI 874 (1170)
Q Consensus 813 ~~lp~---------~i~~l~~L~~L~L~~c~~L~~lp~----lp~sL~~L~i~~C~~L~~l~~~--~~~~~L~~l~i 874 (1170)
+.++. .+..+++|+.|+|++|. ++.+|. -.++|+.|+++++ .++.++.. ..+++|+.+++
T Consensus 517 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L 591 (680)
T 1ziw_A 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNL 591 (680)
T ss_dssp GGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred cccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCCHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEEC
Confidence 75532 25677777888887763 445653 1246777777654 56665542 13445554444
No 9
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.9e-34 Score=387.14 Aligned_cols=310 Identities=19% Similarity=0.251 Sum_probs=247.0
Q ss_pred cCCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhh---hccccCceeEEEecchhhccCCcH
Q 045458 22 TEPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDS---MSYEFDGSSFLADVREKSEKEGSV 98 (1170)
Q Consensus 22 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~ 98 (1170)
.+|..+..||||+.++++|.++|....+++++|+|+||||+||||||+++|++ ....|...+||..+...... ..
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~ 195 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKS--GL 195 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHH--HH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCch--HH
Confidence 46667788999999999999999766677899999999999999999999986 45668877766656543211 12
Q ss_pred HHHHHHHHHHHhhcCC---CccccchhhHHHHHHhhCCC--eEEEEEeCCCCHHHHHHhhcCcCCCCCCcEEEEEeCCch
Q 045458 99 ISLQKQLLSNLLKLGD---ISIWHVEDGINIIGSRLRQK--KVLLIIDDVADVEQLQSLAGKRDWFGPGSRILITTRDKQ 173 (1170)
Q Consensus 99 ~~l~~~ll~~l~~~~~---~~~~~~~~~~~~i~~~L~~k--~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~ 173 (1170)
....+.++..+..... ....+.++..+.+++.+.++ |+||||||||+.++|+.+ ++|++||||||++.
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 196 LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTT
T ss_pred HHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHH
Confidence 3445556666653221 11234455667777777766 999999999999887664 68999999999998
Q ss_pred hhhhhCCCCccEEECCC-CChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHHHHhhcCCCHHHHHHHHH
Q 045458 174 LLVAHEVDEEHILNLDV-LNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVLGSFLIGRTADLWRSALE 252 (1170)
Q Consensus 174 v~~~~~~~~~~~~~l~~-L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L~~~~~~~w~~~l~ 252 (1170)
++... ......++++. |+.+||++||...++.. .+.+.+.+.+|+++|+|+||||+++|++|+.++ ..|+.+++
T Consensus 269 ~~~~~-~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~ 343 (1249)
T 3sfz_A 269 VTDSV-MGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLR 343 (1249)
T ss_dssp TTTTC-CSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHH
T ss_pred HHHhh-cCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHH
Confidence 86432 22234899995 99999999999988533 234556799999999999999999999998776 57999999
Q ss_pred HhhcCCC-----------chHHHHHHhhccCCChhhhhHhhhhccccccc--CHHHHHHHHhhCCCCccchhhhhhcccc
Q 045458 253 RLKRDPS-----------YKIMSILQISFDGLQGSEKKIFLDVACFFKRW--DRDYVAEILEGCGFSPVIGLEVLIERSL 319 (1170)
Q Consensus 253 ~l~~~~~-----------~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~l~~~~~~~g~~~~~~l~~L~~~sL 319 (1170)
++..... ..+..+|.+||+.|++++|+||++||+||+++ +.+.++.+|.+++......++.|+++||
T Consensus 344 ~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl 423 (1249)
T 3sfz_A 344 QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSL 423 (1249)
T ss_dssp HHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccc
Confidence 8865431 35889999999999999999999999999974 7889999998777667778999999999
Q ss_pred eeeeCCCc---eechHHHHHHHHHHHhcc
Q 045458 320 LTVDEDNT---LGMHDLLQELGQLIVARQ 345 (1170)
Q Consensus 320 i~~~~~~~---~~mH~li~~~~~~i~~~~ 345 (1170)
|+...++. |+||+++|+|+++.++++
T Consensus 424 ~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 424 LFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp CEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred eEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 99876664 999999999999886654
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.1e-34 Score=353.74 Aligned_cols=355 Identities=17% Similarity=0.177 Sum_probs=244.3
Q ss_pred CCCCCCCCCC-CCCceeEEEccCCChHH------------------HhhcCC--CCCCCcEEEcCCCCCCCcCCC-CCCC
Q 045458 434 YPLKSLPPNL-QLDKTIEFKMLCSRIEE------------------LWKGIK--SLNMLKVMKVSYSQSLIKIPD-FTGV 491 (1170)
Q Consensus 434 ~~l~~lp~~~-~l~~L~~L~L~~s~i~~------------------L~~~l~--~l~~L~~L~Ls~~~~l~~~~~-~~~l 491 (1170)
+.++.+|..+ .+.+|++|++++|.+.. +|..+. ++++|++|++++|.....+|. +.++
T Consensus 193 n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 193 NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 3455577766 77888888888888777 777777 888888888888776666664 7778
Q ss_pred CCccEEEeeccC-Ccc-cccccccCC------CCccEEEeeCCCCCCccCc--ccc-CCcccEEEecCCCCCCccccccC
Q 045458 492 PNLEKLYLEGCT-RLR-EIHPSLLLH------SKLVILNLTGCTSLATLPG--KIF-MKSVKKLVLSGCSKLKKFPKIVG 560 (1170)
Q Consensus 492 ~~L~~L~L~~~~-~l~-~~~~~i~~l------~~L~~L~L~~c~~l~~lp~--~~~-l~~L~~L~L~~~~~~~~l~~~l~ 560 (1170)
++|++|++++|. ... .+|..++.+ ++|+.|++++|... .+|. .+. +++|++|++++|.....+| .++
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~ 350 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG 350 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhC
Confidence 888888888876 333 577777665 78888888876544 7776 454 7788888888877665777 777
Q ss_pred CCCCCcEEEecCccCCccCcchhcCCC-CCEEeccCCCCCCcCccccCCCC--cccEEEeeCCCCCCCcchhhc------
Q 045458 561 NMECLSKLLLDGTAIGELPLSIELLSK-LVSLDLNNCKNFKNLPVTISSLK--CLRSLVLSGCSKLKKFPEIVE------ 631 (1170)
Q Consensus 561 ~l~~L~~L~L~~~~i~~l~~~i~~l~~-L~~L~L~~~~~l~~lp~~l~~l~--~L~~L~L~~~~~~~~~p~~~~------ 631 (1170)
++++|++|++++|.+..+|..+..+++ |+.|++++|... .+|..+..+. +|+.|++++|......|..+.
T Consensus 351 ~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 351 SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429 (636)
T ss_dssp EEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred CCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccccc
Confidence 777888888888887777777777877 888888877754 6776666544 788888888777777776666
Q ss_pred -CCcccCeEeccCcCCCccCccc-cCCCCCCEEeccCCcCCccccccCCC--------CCCCCEEEeeCcCCCCCCcccc
Q 045458 632 -SMEDLSELFLDGTSITEVPSSI-ELLTGLNVLNLNDCKNLVRIPDSING--------LKSLQSLNLSGCFKLENVPETL 701 (1170)
Q Consensus 632 -~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~L~~~~~l~~lp~~l~~--------l~~L~~L~L~~c~~l~~l~~~l 701 (1170)
.+++|+.|++++|.+..+|..+ ..+++|+.|++++|... .+|..+.. +++|+.|++++|... .+|..+
T Consensus 430 ~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~ 507 (636)
T 4eco_A 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDF 507 (636)
T ss_dssp CCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGG
T ss_pred ccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhh
Confidence 6677888888888887777664 34777888888777655 55544322 226777777777544 666666
Q ss_pred C--CCCCCcEEEccCccCCCCCccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCE
Q 045458 702 G--QVESLEELHISGTAIRQPPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTK 779 (1170)
Q Consensus 702 ~--~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~ 779 (1170)
. .+++|+.|++++|.++.+|..+..+++|+.|++++|+.. +.+.+...+|..+..+++|+.
T Consensus 508 ~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~l-----------------s~N~l~~~~p~~l~~l~~L~~ 570 (636)
T 4eco_A 508 RATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDA-----------------QGNRTLREWPEGITLCPSLTQ 570 (636)
T ss_dssp STTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCT-----------------TCCBCCCCCCTTGGGCSSCCE
T ss_pred hhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCccc-----------------ccCcccccChHHHhcCCCCCE
Confidence 5 677777777777777777777777777777777665411 112233345555556666666
Q ss_pred EeccCCCCCCCCCcCccCCCCCCCEEECcCCCCcc
Q 045458 780 LDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVS 814 (1170)
Q Consensus 780 L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~ 814 (1170)
|+|++|++ +.+|..+. ++|+.|+|++|.+..
T Consensus 571 L~Ls~N~l--~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 571 LQIGSNDI--RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp EECCSSCC--CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred EECCCCcC--CccCHhHh--CcCCEEECcCCCCcc
Confidence 66666665 23554443 566666666665553
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.1e-33 Score=344.51 Aligned_cols=422 Identities=18% Similarity=0.167 Sum_probs=257.7
Q ss_pred CCccEEeecCcccC----CchhcccCCceEEEcCCCCCCCCCCC-C-CCCceeEEEccCCChHHHh-hcCCCCCCCcEEE
Q 045458 403 TNLRLLGICNLKLP----EGLECLSNKLRLLDWPGYPLKSLPPN-L-QLDKTIEFKMLCSRIEELW-KGIKSLNMLKVMK 475 (1170)
Q Consensus 403 ~~Lr~L~l~~~~l~----~~~~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~s~i~~L~-~~l~~l~~L~~L~ 475 (1170)
++++.|+++++.+. ..+..++ +|++|++++|.++.++.. | .+.+|++|++++|.+..++ ..+..+++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCS-SCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCCC-CceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 46788888877653 2344443 688888888888877654 4 7788888888888887765 5677888888888
Q ss_pred cCCCCCCCcCC--CCCCCCCccEEEeeccCCcc-cccccccCCCCccEEEeeCCCCCCccCcccc-CCcc----cEEEec
Q 045458 476 VSYSQSLIKIP--DFTGVPNLEKLYLEGCTRLR-EIHPSLLLHSKLVILNLTGCTSLATLPGKIF-MKSV----KKLVLS 547 (1170)
Q Consensus 476 Ls~~~~l~~~~--~~~~l~~L~~L~L~~~~~l~-~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L----~~L~L~ 547 (1170)
+++|.. ..++ .++++++|++|++++|.... .+|..+..+++|++|++++|......+..+. +++| +.|+++
T Consensus 107 L~~n~l-~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 107 AVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp CTTSCC-CCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred cccccc-ccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 888763 3333 27788888888888875443 4677788888888888887654433334443 6666 778888
Q ss_pred CCCCCCccccccCCCCCCcEEEecCccC--CccCcchhcCCCCCE--------------------------------Eec
Q 045458 548 GCSKLKKFPKIVGNMECLSKLLLDGTAI--GELPLSIELLSKLVS--------------------------------LDL 593 (1170)
Q Consensus 548 ~~~~~~~l~~~l~~l~~L~~L~L~~~~i--~~l~~~i~~l~~L~~--------------------------------L~L 593 (1170)
+|......+..+..+ +|+.|+++++.. ..++..+..+++++. +++
T Consensus 186 ~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 264 (570)
T 2z63_A 186 LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264 (570)
T ss_dssp TCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred CCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence 877665555555554 678887776532 222333333333332 333
Q ss_pred cCC-CCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCcc
Q 045458 594 NNC-KNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVR 672 (1170)
Q Consensus 594 ~~~-~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~ 672 (1170)
.++ ......|..+..+++|+.|++++|... .+|..+..+ +|+.|++++|.+..+|. ..+++|+.|++.+|.....
T Consensus 265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~ 340 (570)
T 2z63_A 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNA 340 (570)
T ss_dssp EETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCB
T ss_pred hcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCccccc
Confidence 333 222334455666677777777776543 566666666 77777777777776665 4667777777777765554
Q ss_pred ccccCCCCCCCCEEEeeCcCCCCC--CccccCCCCCCcEEEccCccCCCCCccccCCCCCcEEEecCCCCCCCC--CCcc
Q 045458 673 IPDSINGLKSLQSLNLSGCFKLEN--VPETLGQVESLEELHISGTAIRQPPSGIFHMKNLKALYFRGCKGSPSS--TSWS 748 (1170)
Q Consensus 673 lp~~l~~l~~L~~L~L~~c~~l~~--l~~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~~~~~--~~~~ 748 (1170)
.+. ..+++|+.|++++|..... .+..+..+++|+.|++++|.+..++..+..+++|++|++++|...... ..+.
T Consensus 341 ~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 418 (570)
T 2z63_A 341 FSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418 (570)
T ss_dssp CCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTT
T ss_pred ccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhh
Confidence 443 5567777777777654322 145566677777777777777766666777777777777776633211 1222
Q ss_pred cCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCccc-chhhhcCCCCCE
Q 045458 749 RHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVSL-PASISRLSKLEC 827 (1170)
Q Consensus 749 ~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~l-p~~i~~l~~L~~ 827 (1170)
....+..+.++.+.+....|..+..+++|+.|++++|.+.++.+|..+..+++|+.|++++|+++.+ |..+..+++|+.
T Consensus 419 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 498 (570)
T 2z63_A 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498 (570)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCE
Confidence 2333334444444444444444555555555555555543333445555555555555555555544 444555555555
Q ss_pred eeccCc
Q 045458 828 LNLNGC 833 (1170)
Q Consensus 828 L~L~~c 833 (1170)
|++++|
T Consensus 499 L~l~~n 504 (570)
T 2z63_A 499 LNMASN 504 (570)
T ss_dssp EECCSS
T ss_pred EeCCCC
Confidence 555554
No 12
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8.6e-32 Score=339.83 Aligned_cols=476 Identities=20% Similarity=0.171 Sum_probs=367.2
Q ss_pred CCccEEeecCcccCC----chhcccCCceEEEcCCCCCCCCCCCC--CCCceeEEEccCCChHHHhh-cCCCCCCCcEEE
Q 045458 403 TNLRLLGICNLKLPE----GLECLSNKLRLLDWPGYPLKSLPPNL--QLDKTIEFKMLCSRIEELWK-GIKSLNMLKVMK 475 (1170)
Q Consensus 403 ~~Lr~L~l~~~~l~~----~~~~l~~~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~s~i~~L~~-~l~~l~~L~~L~ 475 (1170)
++++.|+++++.+.. .+..+ .+|++|+++++.++.+++.. .+.+|++|++++|.+..+|. .+..+++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRY-SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGG-TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCC-CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 689999999987643 24444 47999999999999886654 89999999999999999987 589999999999
Q ss_pred cCCCCCCCcCC-CCCCCCCccEEEeeccCCcccccccccCCCCccEEEeeCCCCCCccCccc---cCCcccEEEecCCCC
Q 045458 476 VSYSQSLIKIP-DFTGVPNLEKLYLEGCTRLREIHPSLLLHSKLVILNLTGCTSLATLPGKI---FMKSVKKLVLSGCSK 551 (1170)
Q Consensus 476 Ls~~~~l~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~---~l~~L~~L~L~~~~~ 551 (1170)
+++|......| .|.++++|++|++++|......+..+..+++|++|++++|......+..+ .+++|+.|++++|..
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 99998654443 38999999999999987666667788999999999999976544333322 368999999999977
Q ss_pred CCccccccCCC---------------------------CCCcEEEecCccCCcc-CcchhcCC--CCCEEeccCCCCCCc
Q 045458 552 LKKFPKIVGNM---------------------------ECLSKLLLDGTAIGEL-PLSIELLS--KLVSLDLNNCKNFKN 601 (1170)
Q Consensus 552 ~~~l~~~l~~l---------------------------~~L~~L~L~~~~i~~l-~~~i~~l~--~L~~L~L~~~~~l~~ 601 (1170)
....|..+..+ ++|+.|+++++.+..+ |..+..++ +|+.|++++|.....
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 66666655554 4566667777766544 44566554 499999998887766
Q ss_pred CccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCC------ccCc----cccCCCCCCEEeccCCcCCc
Q 045458 602 LPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSIT------EVPS----SIELLTGLNVLNLNDCKNLV 671 (1170)
Q Consensus 602 lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~------~lp~----~i~~l~~L~~L~L~~~~~l~ 671 (1170)
.|..+..+++|+.|++++|......|..+..+++|+.|+++++... .+|. .+..+++|+.|++++|....
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 6777888999999999998887777888888999999999876443 3443 57788899999999988877
Q ss_pred cccccCCCCCCCCEEEeeCcCCC-CCCcc-ccC--CCCCCcEEEccCccCCCC-CccccCCCCCcEEEecCCCCCC--CC
Q 045458 672 RIPDSINGLKSLQSLNLSGCFKL-ENVPE-TLG--QVESLEELHISGTAIRQP-PSGIFHMKNLKALYFRGCKGSP--SS 744 (1170)
Q Consensus 672 ~lp~~l~~l~~L~~L~L~~c~~l-~~l~~-~l~--~l~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~c~~~~--~~ 744 (1170)
..+..+..+++|+.|++++|... ..++. .+. ..++|+.|++++|.++.+ |..+..+++|+.|++++|.... +.
T Consensus 344 ~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 423 (680)
T 1ziw_A 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS
T ss_pred CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc
Confidence 77778888999999999988532 22221 111 235899999999998866 5678889999999999998642 23
Q ss_pred CCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCC-CCCcCccCCCCCCCEEECcCCCCcccch-hhhcC
Q 045458 745 TSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGE-GFIPNDIGNLRSLKVLCLSNNSFVSLPA-SISRL 822 (1170)
Q Consensus 745 ~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~-~~~~~~l~~l~sL~~L~Ls~n~l~~lp~-~i~~l 822 (1170)
..+.....+..+.++.+.+....+..+..+++|+.|++++|.+.. +.+|..+..+++|+.|++++|+++.+|. .+..+
T Consensus 424 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l 503 (680)
T 1ziw_A 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503 (680)
T ss_dssp GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccc
Confidence 445566677778888888877778889999999999999998743 4578889999999999999999998875 47899
Q ss_pred CCCCEeeccCccCCCcC-----CC-------CCcccceeeccCCcCCcccCCc--ccccccccceeeccCcccccC
Q 045458 823 SKLECLNLNGCKKLQSL-----PP-------LPARMRIASVNGCASLETLSDP--LELNKLKDFEIQCMDCVKLQG 884 (1170)
Q Consensus 823 ~~L~~L~L~~c~~L~~l-----p~-------lp~sL~~L~i~~C~~L~~l~~~--~~~~~L~~l~i~~~~c~~l~~ 884 (1170)
++|+.|++++|+. +.+ |. -.++|+.|+++++ .++.++.. ..+++|+.+++ ...++.+
T Consensus 504 ~~L~~L~Ls~N~l-~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~L---s~N~l~~ 574 (680)
T 1ziw_A 504 EKLEILDLQHNNL-ARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDL---GLNNLNT 574 (680)
T ss_dssp TTCCEEECCSSCC-GGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC---CSSCCCC
T ss_pred cccCEEeCCCCCc-cccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcccccCcceeEC---CCCCCCc
Confidence 9999999999864 333 21 1257999999987 56666642 34555555554 3444443
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.8e-32 Score=351.14 Aligned_cols=443 Identities=17% Similarity=0.150 Sum_probs=231.3
Q ss_pred CCccEEeecCcccC----CchhcccCCceEEEcCCCC-CCCC-CCCC-CCCceeEEEccCCChHHH-hhcCCCCCCCcEE
Q 045458 403 TNLRLLGICNLKLP----EGLECLSNKLRLLDWPGYP-LKSL-PPNL-QLDKTIEFKMLCSRIEEL-WKGIKSLNMLKVM 474 (1170)
Q Consensus 403 ~~Lr~L~l~~~~l~----~~~~~l~~~Lr~L~l~~~~-l~~l-p~~~-~l~~L~~L~L~~s~i~~L-~~~l~~l~~L~~L 474 (1170)
++|+.|+++++.+. ..+..++ +|++|++++|. +..+ |..| .+.+|++|+|++|.+..+ |..+..+++|++|
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~-~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLE-QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCC-SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCcCEEECCCCcCCccChhHCcccc-cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 45555555555432 2233332 45555555552 3344 3333 555555666655555544 4555555566666
Q ss_pred EcCCCCCCCcCCC---CCCCCCccEEEeeccCCccccc-ccccCCCCccEEEeeCCCCCCccCcccc-C--CcccEEEec
Q 045458 475 KVSYSQSLIKIPD---FTGVPNLEKLYLEGCTRLREIH-PSLLLHSKLVILNLTGCTSLATLPGKIF-M--KSVKKLVLS 547 (1170)
Q Consensus 475 ~Ls~~~~l~~~~~---~~~l~~L~~L~L~~~~~l~~~~-~~i~~l~~L~~L~L~~c~~l~~lp~~~~-l--~~L~~L~L~ 547 (1170)
+|++|.....+|. +.++++|++|+|++|......+ ..++.+++|+.|++++|......+..+. + ++|+.|+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 6655554332222 5555556666665554332222 3455555566666555444333333332 2 455555555
Q ss_pred CCCCCCccccccCCCCC------CcEEEecCccCC-ccCcc------------------------------------hhc
Q 045458 548 GCSKLKKFPKIVGNMEC------LSKLLLDGTAIG-ELPLS------------------------------------IEL 584 (1170)
Q Consensus 548 ~~~~~~~l~~~l~~l~~------L~~L~L~~~~i~-~l~~~------------------------------------i~~ 584 (1170)
+|......|..++.+.+ |+.|++++|.+. ..+.. +..
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 55544444444433333 555555554331 11111 111
Q ss_pred --CCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCCcc-CccccCCCCCCE
Q 045458 585 --LSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSITEV-PSSIELLTGLNV 661 (1170)
Q Consensus 585 --l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~ 661 (1170)
.++|+.|++++|......|..+..+++|+.|++++|......|..+..+++|+.|++++|.+..+ |..+..+++|+.
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence 25667777776665555566666677777777777666666666666677777777777776654 455666777777
Q ss_pred EeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCCCcc------------------
Q 045458 662 LNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQPPSG------------------ 723 (1170)
Q Consensus 662 L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~lp~~------------------ 723 (1170)
|++++|......+..+..+++|+.|++++|... .++ .+++|+.|++++|.++.+|..
T Consensus 343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~----~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~ 417 (844)
T 3j0a_A 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-TIH----FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLD 417 (844)
T ss_dssp EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC-CCS----SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSST
T ss_pred EECCCCCCCccChhhhcCCCCCCEEECCCCCCC-ccc----CCCCcchhccCCCCcccccccccccceeecccCccccCc
Confidence 777776554444455666777777777766432 222 245556666665555554432
Q ss_pred ----ccCCCCCcEEEecCCCCCCCCC--CcccCcccccccccCCCCc-----ccCCCCCCCCCCcCEEeccCCCCCCCCC
Q 045458 724 ----IFHMKNLKALYFRGCKGSPSST--SWSRHFPFNLIKRSLDPVA-----FSFPPSLSGLYSLTKLDLSDCDLGEGFI 792 (1170)
Q Consensus 724 ----l~~l~~L~~L~L~~c~~~~~~~--~~~~~~~l~~~~~~~~~~~-----~~lp~~l~~l~~L~~L~Ls~c~l~~~~~ 792 (1170)
+..+++|++|++++|....... .......+..+.++.|.+. ...+..+..+++|+.|+|++|++. +..
T Consensus 418 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~ 496 (844)
T 3j0a_A 418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLP 496 (844)
T ss_dssp THHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHT-TCC
T ss_pred hhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCccc-ccC
Confidence 2356666666666665432111 1112233334444444433 122233455555666666666553 344
Q ss_pred cCccCCCCCCCEEECcCCCCcccchhhhcCCCCCEeeccCccCCCcCCCCCcccceeeccC
Q 045458 793 PNDIGNLRSLKVLCLSNNSFVSLPASISRLSKLECLNLNGCKKLQSLPPLPARMRIASVNG 853 (1170)
Q Consensus 793 ~~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~i~~ 853 (1170)
|..+..+++|+.|+|++|+++.+|...-. ++|+.|+|++|......|...++|+.|++.+
T Consensus 497 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~ 556 (844)
T 3j0a_A 497 PGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDVFVSLSVLDITH 556 (844)
T ss_dssp TTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCCCSSCCEEEEEE
T ss_pred hhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCCCChhHhCCcCEEEecC
Confidence 44455556666666666666555533222 5566666665554444444444555555554
No 14
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=349.00 Aligned_cols=334 Identities=19% Similarity=0.230 Sum_probs=247.1
Q ss_pred cCCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhh---ccccCceeEEEecchhhccCCcH
Q 045458 22 TEPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSM---SYEFDGSSFLADVREKSEKEGSV 98 (1170)
Q Consensus 22 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~---~~~f~~~~~~~~~~~~~~~~~~~ 98 (1170)
..|..+..||||+.++++|.+++....++.++|+|+||||+||||||++++++. +..|+..+||..+.... ....
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~-~~~~- 195 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD-KSGL- 195 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC-HHHH-
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc-hHHH-
Confidence 556777899999999999999998655678999999999999999999999864 67896544444444321 1111
Q ss_pred HHHHHHHHHHHhhcC---CCccccchhhHHHHHHhhCC--CeEEEEEeCCCCHHHHHHhhcCcCCCCCCcEEEEEeCCch
Q 045458 99 ISLQKQLLSNLLKLG---DISIWHVEDGINIIGSRLRQ--KKVLLIIDDVADVEQLQSLAGKRDWFGPGSRILITTRDKQ 173 (1170)
Q Consensus 99 ~~l~~~ll~~l~~~~---~~~~~~~~~~~~~i~~~L~~--k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~ 173 (1170)
......+...+.... .....+.+.....+++.+.+ +++||||||||+..+++.+ ++|++||||||++.
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGG
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcH
Confidence 112222333332111 12233445566677777765 7899999999998877643 67899999999998
Q ss_pred hhhhhCCCCccEEEC---CCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHHHHhhcCCCHHHHHHH
Q 045458 174 LLVAHEVDEEHILNL---DVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVLGSFLIGRTADLWRSA 250 (1170)
Q Consensus 174 v~~~~~~~~~~~~~l---~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L~~~~~~~w~~~ 250 (1170)
++.... .. .+++ ++|+.+||++||...++.. .....+.+.+|+++|+|+||||+++|+.++.+. ..|+.+
T Consensus 269 ~~~~~~-~~--~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~ 341 (591)
T 1z6t_A 269 VTDSVM-GP--KYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYY 341 (591)
T ss_dssp GGTTCC-SC--EEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHH
T ss_pred HHHhcC-CC--ceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHH
Confidence 765433 22 4555 5899999999999998642 223346789999999999999999999998764 369999
Q ss_pred HHHhhcCC-----------CchHHHHHHhhccCCChhhhhHhhhhcccccc--cCHHHHHHHHhhCCCCccchhhhhhcc
Q 045458 251 LERLKRDP-----------SYKIMSILQISFDGLQGSEKKIFLDVACFFKR--WDRDYVAEILEGCGFSPVIGLEVLIER 317 (1170)
Q Consensus 251 l~~l~~~~-----------~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~--~~~~~l~~~~~~~g~~~~~~l~~L~~~ 317 (1170)
++.+.... ...+..++..||+.|+++.|.||+++|+||++ ++.+.+..+|..++......++.|+++
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~ 421 (591)
T 1z6t_A 342 LKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNK 421 (591)
T ss_dssp HHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhC
Confidence 88886543 24788999999999999999999999999986 567888999976544456679999999
Q ss_pred cceeeeCCC---ceechHHHHHHHHHHHhcc-------------------CCCCCCCccccccchhhhHHhcccCC
Q 045458 318 SLLTVDEDN---TLGMHDLLQELGQLIVARQ-------------------SPEEPGKRSRIWRGEEVRHVLTKNTG 371 (1170)
Q Consensus 318 sLi~~~~~~---~~~mH~li~~~~~~i~~~~-------------------~~~~~~~~~~l~~~~~i~~~l~~~~~ 371 (1170)
|||+...++ +|.||+++|+++++....+ ....++.+.++|..+.++|+...+..
T Consensus 422 ~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~a~~~ 497 (591)
T 1z6t_A 422 SLLFCDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKMH 497 (591)
T ss_dssp TSSEEEEETTEEEEECCHHHHHHHHHHTGGGHHHHHHHHHHHHTTTCCGGGCCTTSTTHHHHHHHHHHHHHHTTCH
T ss_pred cCeEEecCCCccEEEEcHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCEEeehhhHHHHHHhcCCH
Confidence 999876432 6999999999998772210 01223345566777788888776653
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.2e-33 Score=347.91 Aligned_cols=342 Identities=16% Similarity=0.198 Sum_probs=198.9
Q ss_pred cccccccCCCCccEEEeeCCCCCCc-----------------cCcccc---CCcccEEEecCCCCCCccccccCCCCCCc
Q 045458 507 EIHPSLLLHSKLVILNLTGCTSLAT-----------------LPGKIF---MKSVKKLVLSGCSKLKKFPKIVGNMECLS 566 (1170)
Q Consensus 507 ~~~~~i~~l~~L~~L~L~~c~~l~~-----------------lp~~~~---l~~L~~L~L~~~~~~~~l~~~l~~l~~L~ 566 (1170)
.+|..++++++|++|++++|..... +|..+. +++|++|++++|.....+|..++++++|+
T Consensus 197 ~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 3555555555555555555443221 454443 55555555555555555555555555566
Q ss_pred EEEecCcc-CC--ccCcchhcC------CCCCEEeccCCCCCCcCcc--ccCCCCcccEEEeeCCCCCCCcchhhcCCcc
Q 045458 567 KLLLDGTA-IG--ELPLSIELL------SKLVSLDLNNCKNFKNLPV--TISSLKCLRSLVLSGCSKLKKFPEIVESMED 635 (1170)
Q Consensus 567 ~L~L~~~~-i~--~l~~~i~~l------~~L~~L~L~~~~~l~~lp~--~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~ 635 (1170)
+|++++|. +. .+|..++.+ ++|+.|++++|... .+|. .++.+++|+.|++++|.....+| .+..+++
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~ 354 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK 354 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCC
Confidence 66665555 44 355555544 55666666555544 5555 55555566666665555444555 5555556
Q ss_pred cCeEeccCcCCCccCccccCCCC-CCEEeccCCcCCccccccCCCCC--CCCEEEeeCcCCCCCCccccC-------CCC
Q 045458 636 LSELFLDGTSITEVPSSIELLTG-LNVLNLNDCKNLVRIPDSINGLK--SLQSLNLSGCFKLENVPETLG-------QVE 705 (1170)
Q Consensus 636 L~~L~l~~~~l~~lp~~i~~l~~-L~~L~L~~~~~l~~lp~~l~~l~--~L~~L~L~~c~~l~~l~~~l~-------~l~ 705 (1170)
|+.|++++|.+..+|..+..+++ |+.|++++|... .+|..+..++ +|+.|++++|......|..+. .++
T Consensus 355 L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~ 433 (636)
T 4eco_A 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433 (636)
T ss_dssp ESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC
T ss_pred CCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCC
Confidence 66666666655555555555555 666666655533 5555544433 566666666555555555554 455
Q ss_pred CCcEEEccCccCCCCCcccc-CCCCCcEEEecCCCCCCCCCCcccCc--------ccccccccCCCCcccCCCCCC--CC
Q 045458 706 SLEELHISGTAIRQPPSGIF-HMKNLKALYFRGCKGSPSSTSWSRHF--------PFNLIKRSLDPVAFSFPPSLS--GL 774 (1170)
Q Consensus 706 ~L~~L~L~~~~i~~lp~~l~-~l~~L~~L~L~~c~~~~~~~~~~~~~--------~l~~~~~~~~~~~~~lp~~l~--~l 774 (1170)
+|+.|++++|.++.+|..+. .+++|++|++++|.....+....... .+..+.++.|.+. .+|..+. .+
T Consensus 434 ~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l 512 (636)
T 4eco_A 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTL 512 (636)
T ss_dssp CEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTC
T ss_pred CCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccC
Confidence 56666666666655555443 35566666666655432211111110 2333333444443 4566665 77
Q ss_pred CCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcC------CCCc-ccchhhhcCCCCCEeeccCccCCCcCCC-CCccc
Q 045458 775 YSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSN------NSFV-SLPASISRLSKLECLNLNGCKKLQSLPP-LPARM 846 (1170)
Q Consensus 775 ~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~------n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~-lp~sL 846 (1170)
++|+.|+|++|++.. +|..+..+++|+.|+|++ |++. .+|..+..+++|+.|+|++|+. +.+|. +.++|
T Consensus 513 ~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L 589 (636)
T 4eco_A 513 PYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPNI 589 (636)
T ss_dssp TTCCEEECCSSCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCTTC
T ss_pred CCcCEEECCCCCCCC--cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHhCcC
Confidence 888888888888754 777777888888888844 4444 6777788888888888888765 77775 55778
Q ss_pred ceeeccCCc
Q 045458 847 RIASVNGCA 855 (1170)
Q Consensus 847 ~~L~i~~C~ 855 (1170)
+.|++++|+
T Consensus 590 ~~L~Ls~N~ 598 (636)
T 4eco_A 590 SVLDIKDNP 598 (636)
T ss_dssp CEEECCSCT
T ss_pred CEEECcCCC
Confidence 888887775
No 16
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.5e-34 Score=352.62 Aligned_cols=280 Identities=19% Similarity=0.172 Sum_probs=212.9
Q ss_pred ccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHh--hhccccCceeEEEecchhhccCCcHHHHHHHHH
Q 045458 29 ELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYD--SMSYEFDGSSFLADVREKSEKEGSVISLQKQLL 106 (1170)
Q Consensus 29 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~--~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll 106 (1170)
..|||+.++++|.++|... +++++|+|+||||+||||||+++|+ +++.+|+..++|.+++.... ...++..++
T Consensus 129 ~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d----~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS----PETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSS----HHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCC----HHHHHHHHH
Confidence 3499999999999998753 3479999999999999999999996 47889998555555544322 245555555
Q ss_pred HHHhhcC---C--C-----ccccchhhHHHHHHhh---CCCeEEEEEeCCCCHHHHHHhhcCcCCCCCCcEEEEEeCCch
Q 045458 107 SNLLKLG---D--I-----SIWHVEDGINIIGSRL---RQKKVLLIIDDVADVEQLQSLAGKRDWFGPGSRILITTRDKQ 173 (1170)
Q Consensus 107 ~~l~~~~---~--~-----~~~~~~~~~~~i~~~L---~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~ 173 (1170)
..+.... . . ...+.++..+.+++.| ++||+||||||||+.++|+.+ ++||+||||||++.
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd~~ 276 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFKQ 276 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSCSH
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEeccChH
Confidence 5432211 0 0 0112334455666655 679999999999999999876 27899999999999
Q ss_pred hhhhhCCCCccEEECC------CCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHHHHhhcCC--CHH
Q 045458 174 LLVAHEVDEEHILNLD------VLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVLGSFLIGR--TAD 245 (1170)
Q Consensus 174 v~~~~~~~~~~~~~l~------~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L~~~--~~~ 245 (1170)
++....... .|+|+ +|+.+||++||+++. +.. ..++..++ |+|+||||+++|+.|+.+ +.+
T Consensus 277 Va~~l~g~~--vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~e 345 (1221)
T 1vt4_I 277 VTDFLSAAT--TTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWD 345 (1221)
T ss_dssp HHHHHHHHS--SCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHH
T ss_pred HHHhcCCCe--EEEecCccccCCcCHHHHHHHHHHHc-CCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHH
Confidence 875433222 45666 999999999999884 222 12333333 999999999999999887 788
Q ss_pred HHHHHHHHhhcCCCchHHHHHHhhccCCChhh-hhHhhhhccccccc--CHHHHHHHHhhCCC-Cccchhhhhhccccee
Q 045458 246 LWRSALERLKRDPSYKIMSILQISFDGLQGSE-KKIFLDVACFFKRW--DRDYVAEILEGCGF-SPVIGLEVLIERSLLT 321 (1170)
Q Consensus 246 ~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~-k~~fl~~a~f~~~~--~~~~l~~~~~~~g~-~~~~~l~~L~~~sLi~ 321 (1170)
+|+.. ....+..+|+.||+.|++++ |+||++||+||+++ +.+.++.+|.++|. .+...++.|+++|||+
T Consensus 346 eW~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq 418 (1221)
T 1vt4_I 346 NWKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418 (1221)
T ss_dssp HHHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSS
T ss_pred HHhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEE
Confidence 88763 35689999999999999999 99999999999875 66789999988763 2445699999999999
Q ss_pred eeC-CCceechHHHHHHH
Q 045458 322 VDE-DNTLGMHDLLQELG 338 (1170)
Q Consensus 322 ~~~-~~~~~mH~li~~~~ 338 (1170)
... .++|+|||++++++
T Consensus 419 ~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 419 KQPKESTISIPSIYLELK 436 (1221)
T ss_dssp BCSSSSEEBCCCHHHHHH
T ss_pred EeCCCCEEEehHHHHHHh
Confidence 863 46899999998844
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=8.9e-33 Score=348.81 Aligned_cols=341 Identities=16% Similarity=0.181 Sum_probs=278.4
Q ss_pred CCC-CCCCCCccEEEeeccCCcc-----------------ccccccc--CCCCccEEEeeCCCCCCccCcccc-CCcccE
Q 045458 485 IPD-FTGVPNLEKLYLEGCTRLR-----------------EIHPSLL--LHSKLVILNLTGCTSLATLPGKIF-MKSVKK 543 (1170)
Q Consensus 485 ~~~-~~~l~~L~~L~L~~~~~l~-----------------~~~~~i~--~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~ 543 (1170)
+|. ++++++|++|+|++|.... .+|..++ .+++|+.|++++|.....+|..+. +++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 554 7888888888888876444 2888877 889999999998888888887776 889999
Q ss_pred EEecCCC-CCC-ccccccCCCC-------CCcEEEecCccCCccCc--chhcCCCCCEEeccCCCCCCcCccccCCCCcc
Q 045458 544 LVLSGCS-KLK-KFPKIVGNME-------CLSKLLLDGTAIGELPL--SIELLSKLVSLDLNNCKNFKNLPVTISSLKCL 612 (1170)
Q Consensus 544 L~L~~~~-~~~-~l~~~l~~l~-------~L~~L~L~~~~i~~l~~--~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L 612 (1170)
|+|++|. ... .+|..++++. +|+.|++++|.+..+|. .+..+++|+.|++++|... .+| .+..+++|
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L 597 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKL 597 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcc
Confidence 9999887 444 5777666554 89999999999999998 8999999999999998866 888 88899999
Q ss_pred cEEEeeCCCCCCCcchhhcCCcc-cCeEeccCcCCCccCccccCCCC--CCEEeccCCcCCccccc---cCC--CCCCCC
Q 045458 613 RSLVLSGCSKLKKFPEIVESMED-LSELFLDGTSITEVPSSIELLTG--LNVLNLNDCKNLVRIPD---SIN--GLKSLQ 684 (1170)
Q Consensus 613 ~~L~L~~~~~~~~~p~~~~~l~~-L~~L~l~~~~l~~lp~~i~~l~~--L~~L~L~~~~~l~~lp~---~l~--~l~~L~ 684 (1170)
+.|++++|... .+|..+..+++ |+.|++++|.+..+|..+..++. |+.|++++|.....+|. .+. .+++|+
T Consensus 598 ~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~ 676 (876)
T 4ecn_A 598 TDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS 676 (876)
T ss_dssp SEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEE
T ss_pred eEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcC
Confidence 99999998876 88888888888 99999999999999988877654 99999999987765553 222 345899
Q ss_pred EEEeeCcCCCCCCccccC-CCCCCcEEEccCccCCCCCccccCCC--------CCcEEEecCCCCCCCCCCcccCccccc
Q 045458 685 SLNLSGCFKLENVPETLG-QVESLEELHISGTAIRQPPSGIFHMK--------NLKALYFRGCKGSPSSTSWSRHFPFNL 755 (1170)
Q Consensus 685 ~L~L~~c~~l~~l~~~l~-~l~~L~~L~L~~~~i~~lp~~l~~l~--------~L~~L~L~~c~~~~~~~~~~~~~~l~~ 755 (1170)
.|++++|... .+|..+. .+++|+.|++++|.++.+|..+.... +|+.|+|++|...
T Consensus 677 ~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-------------- 741 (876)
T 4ecn_A 677 TVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-------------- 741 (876)
T ss_dssp EEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC--------------
T ss_pred EEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc--------------
Confidence 9999998655 6666554 78999999999999998888766533 8999999998743
Q ss_pred ccccCCCCcccCCCCCC--CCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcC------CCCc-ccchhhhcCCCCC
Q 045458 756 IKRSLDPVAFSFPPSLS--GLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSN------NSFV-SLPASISRLSKLE 826 (1170)
Q Consensus 756 ~~~~~~~~~~~lp~~l~--~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~------n~l~-~lp~~i~~l~~L~ 826 (1170)
.+|..+. .+++|+.|+|++|++.. +|..+..+++|+.|+|++ |++. .+|..+..+++|+
T Consensus 742 ----------~lp~~l~~~~l~~L~~L~Ls~N~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~ 809 (876)
T 4ecn_A 742 ----------SLSDDFRATTLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809 (876)
T ss_dssp ----------CCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCC
T ss_pred ----------cchHHhhhccCCCcCEEEeCCCCCCc--cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCC
Confidence 3455555 78899999999999864 788899999999999977 5544 6888899999999
Q ss_pred EeeccCccCCCcCCC-CCcccceeeccCCcC
Q 045458 827 CLNLNGCKKLQSLPP-LPARMRIASVNGCAS 856 (1170)
Q Consensus 827 ~L~L~~c~~L~~lp~-lp~sL~~L~i~~C~~ 856 (1170)
.|+|++|+. +.+|. ++++|+.|++++|+-
T Consensus 810 ~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 810 QLQIGSNDI-RKVDEKLTPQLYILDIADNPN 839 (876)
T ss_dssp EEECCSSCC-CBCCSCCCSSSCEEECCSCTT
T ss_pred EEECCCCCC-CccCHhhcCCCCEEECCCCCC
Confidence 999999876 88886 677999999999873
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.5e-32 Score=346.21 Aligned_cols=443 Identities=18% Similarity=0.157 Sum_probs=313.0
Q ss_pred EEeecCcccCCchhcccCCceEEEcCCCCCCCCC-CCC-CCCceeEEEccCC-ChHHH-hhcCCCCCCCcEEEcCCCCCC
Q 045458 407 LLGICNLKLPEGLECLSNKLRLLDWPGYPLKSLP-PNL-QLDKTIEFKMLCS-RIEEL-WKGIKSLNMLKVMKVSYSQSL 482 (1170)
Q Consensus 407 ~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp-~~~-~l~~L~~L~L~~s-~i~~L-~~~l~~l~~L~~L~Ls~~~~l 482 (1170)
..+.+++++..-+. +|.+|++|++++|.++.++ ..| .+.+|++|++++| .+..+ |..+.++++|++|+|++|...
T Consensus 8 ~~dcs~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~ 86 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86 (844)
T ss_dssp EEEESCCCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred EEEccCCCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc
Confidence 45555666655555 8889999999999998874 455 8999999999998 44556 678999999999999999876
Q ss_pred CcCCC-CCCCCCccEEEeeccCCccccccc--ccCCCCccEEEeeCCCCCCccC-cccc-CCcccEEEecCCCCCCcccc
Q 045458 483 IKIPD-FTGVPNLEKLYLEGCTRLREIHPS--LLLHSKLVILNLTGCTSLATLP-GKIF-MKSVKKLVLSGCSKLKKFPK 557 (1170)
Q Consensus 483 ~~~~~-~~~l~~L~~L~L~~~~~l~~~~~~--i~~l~~L~~L~L~~c~~l~~lp-~~~~-l~~L~~L~L~~~~~~~~l~~ 557 (1170)
...|+ |.++++|++|+|++|.....++.. +..+++|++|++++|......+ ..+. +++|++|++++|......+.
T Consensus 87 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~ 166 (844)
T 3j0a_A 87 FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH 166 (844)
T ss_dssp EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG
T ss_pred ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH
Confidence 66564 899999999999998665555655 8899999999999977655444 2344 99999999999988877888
Q ss_pred ccCCC--CCCcEEEecCccCCc-cCcchhcCCC------CCEEeccCCCCCCcCcccc----------------------
Q 045458 558 IVGNM--ECLSKLLLDGTAIGE-LPLSIELLSK------LVSLDLNNCKNFKNLPVTI---------------------- 606 (1170)
Q Consensus 558 ~l~~l--~~L~~L~L~~~~i~~-l~~~i~~l~~------L~~L~L~~~~~l~~lp~~l---------------------- 606 (1170)
.+..+ ++|+.|++++|.+.. .|..+..+++ |+.|++++|......+..+
T Consensus 167 ~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~ 246 (844)
T 3j0a_A 167 ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246 (844)
T ss_dssp GGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS
T ss_pred HcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc
Confidence 88777 899999999998844 4555555554 9999999986443333221
Q ss_pred --------------CC--CCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCCcc-CccccCCCCCCEEeccCCcC
Q 045458 607 --------------SS--LKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSITEV-PSSIELLTGLNVLNLNDCKN 669 (1170)
Q Consensus 607 --------------~~--l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~~~~ 669 (1170)
.. .++|+.|++++|......+..+..+++|+.|++++|.+..+ |..+..+++|+.|++++|..
T Consensus 247 ~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l 326 (844)
T 3j0a_A 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326 (844)
T ss_dssp SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCC
T ss_pred ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCC
Confidence 11 26788888888877777777788888888888888888865 45678888888888888887
Q ss_pred CccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCCCccccCCCCCcEEEecCCCCCCCCCCcc-
Q 045458 670 LVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQPPSGIFHMKNLKALYFRGCKGSPSSTSWS- 748 (1170)
Q Consensus 670 l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~~~~~~~~~- 748 (1170)
....|..+..+++|+.|++++|......+..+..+++|+.|++++|.++.++. +++|+.|.+++|+....+....
T Consensus 327 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~~~~~ 402 (844)
T 3j0a_A 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKINLT 402 (844)
T ss_dssp SCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCCCCTT
T ss_pred CccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCcccccccccc
Confidence 76677788888888888888886655555667888888888888888876654 7778888888877543221110
Q ss_pred ---------------------cCcccccccccCCCCcccCC-CCCCCCCCcCEEeccCCCCCC----CCCcCccCCCCCC
Q 045458 749 ---------------------RHFPFNLIKRSLDPVAFSFP-PSLSGLYSLTKLDLSDCDLGE----GFIPNDIGNLRSL 802 (1170)
Q Consensus 749 ---------------------~~~~l~~~~~~~~~~~~~lp-~~l~~l~~L~~L~Ls~c~l~~----~~~~~~l~~l~sL 802 (1170)
....+..+.++.|.+....+ ..+..+++|+.|++++|.+.. +..+..+..+++|
T Consensus 403 l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L 482 (844)
T 3j0a_A 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHL 482 (844)
T ss_dssp CCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCE
T ss_pred cceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccc
Confidence 11122222333333321111 123334555555555555421 2223445666677
Q ss_pred CEEECcCCCCcccch-hhhcCCCCCEeeccCccCCCcCCC--CCcccceeeccCCc
Q 045458 803 KVLCLSNNSFVSLPA-SISRLSKLECLNLNGCKKLQSLPP--LPARMRIASVNGCA 855 (1170)
Q Consensus 803 ~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~--lp~sL~~L~i~~C~ 855 (1170)
+.|+|++|+++.+|. .+..+++|+.|+|++| .++.+|. ++++|+.|+++++.
T Consensus 483 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 483 QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLPANLEILDISRNQ 537 (844)
T ss_dssp ECCCCCHHHHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCCSCCCEEEEEEEC
T ss_pred cEEECCCCcccccChhHccchhhhheeECCCC-CCCccChhhhhccccEEECCCCc
Confidence 777777776666553 3566777777777775 3455543 45677777777653
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.4e-32 Score=335.28 Aligned_cols=418 Identities=23% Similarity=0.252 Sum_probs=319.2
Q ss_pred hcchhhhccCCCccEEeecCcccC----CchhcccCCceEEEcCCCCCCCCCC-CC-CCCceeEEEccCCChHHHhh-cC
Q 045458 393 WASAKAFSKMTNLRLLGICNLKLP----EGLECLSNKLRLLDWPGYPLKSLPP-NL-QLDKTIEFKMLCSRIEELWK-GI 465 (1170)
Q Consensus 393 ~~~~~~f~~~~~Lr~L~l~~~~l~----~~~~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~s~i~~L~~-~l 465 (1170)
.+...+|..+++|++|+++++.+. ..+..+ .+|++|++++|.++.+|. .| .+.+|++|++++|.+..++. .+
T Consensus 42 ~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~ 120 (570)
T 2z63_A 42 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL-SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120 (570)
T ss_dssp EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTC-TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSC
T ss_pred ccChhHhhCCCCceEEECCCCcCCccCcccccCc-hhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccc
Confidence 345668999999999999998753 334444 479999999999998885 45 89999999999999998875 68
Q ss_pred CCCCCCcEEEcCCCCCCC-cCCC-CCCCCCccEEEeeccCCcccccccccCCCCc----cEEEeeCCCCCCccCccccCC
Q 045458 466 KSLNMLKVMKVSYSQSLI-KIPD-FTGVPNLEKLYLEGCTRLREIHPSLLLHSKL----VILNLTGCTSLATLPGKIFMK 539 (1170)
Q Consensus 466 ~~l~~L~~L~Ls~~~~l~-~~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L----~~L~L~~c~~l~~lp~~~~l~ 539 (1170)
..+++|++|++++|.... .+|. ++++++|++|++++|......+..+..+++| +.|++++|......+..+...
T Consensus 121 ~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~ 200 (570)
T 2z63_A 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200 (570)
T ss_dssp TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC
T ss_pred cccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC
Confidence 999999999999998554 3454 8899999999999986555555677777777 788998876554444444455
Q ss_pred cccEEEecCCCC----------------------------------------------------------CCccccccCC
Q 045458 540 SVKKLVLSGCSK----------------------------------------------------------LKKFPKIVGN 561 (1170)
Q Consensus 540 ~L~~L~L~~~~~----------------------------------------------------------~~~l~~~l~~ 561 (1170)
+|+.|++++|.. ....+..+..
T Consensus 201 ~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~ 280 (570)
T 2z63_A 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280 (570)
T ss_dssp EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGG
T ss_pred cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcC
Confidence 788888877621 1223455666
Q ss_pred CCCCcEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEec
Q 045458 562 MECLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFL 641 (1170)
Q Consensus 562 l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l 641 (1170)
+++|++|+++++.+..+|..+..+ +|+.|++++|... .+|. ..+++|+.|++++|......+. ..+++|+.|++
T Consensus 281 l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l 354 (570)
T 2z63_A 281 LTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDL 354 (570)
T ss_dssp GTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEEC
T ss_pred cCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeC
Confidence 778888888888888888777777 8888888887654 5554 4677888888888776655544 66778888888
Q ss_pred cCcCCCcc---CccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCc-cccCCCCCCcEEEccCccC
Q 045458 642 DGTSITEV---PSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVP-ETLGQVESLEELHISGTAI 717 (1170)
Q Consensus 642 ~~~~l~~l---p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~-~~l~~l~~L~~L~L~~~~i 717 (1170)
++|.+... +..+..+++|+.|++++|.... ++..+..+++|+.|++++|......+ ..+..+++|+.|++++|.+
T Consensus 355 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 433 (570)
T 2z63_A 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433 (570)
T ss_dssp CSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCC
T ss_pred cCCccCccccccccccccCccCEEECCCCcccc-ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcc
Confidence 88887755 5667778888888888876544 33347778888888888876555444 4567778888888888877
Q ss_pred CC-CCccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCcc
Q 045458 718 RQ-PPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPNDI 796 (1170)
Q Consensus 718 ~~-lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l 796 (1170)
.. .|..+..+++|++|++++|... ...+|..+..+++|+.|++++|++. +..|..+
T Consensus 434 ~~~~~~~~~~l~~L~~L~l~~n~l~----------------------~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~~~ 490 (570)
T 2z63_A 434 RVAFNGIFNGLSSLEVLKMAGNSFQ----------------------ENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAF 490 (570)
T ss_dssp EECCTTTTTTCTTCCEEECTTCEEG----------------------GGEECSCCTTCTTCCEEECTTSCCC-EECTTTT
T ss_pred cccchhhhhcCCcCcEEECcCCcCc----------------------cccchhhhhcccCCCEEECCCCccc-cCChhhh
Confidence 64 4556677888888888877532 1246777899999999999999985 5568889
Q ss_pred CCCCCCCEEECcCCCCcccch-hhhcCCCCCEeeccCccCCCcCCC
Q 045458 797 GNLRSLKVLCLSNNSFVSLPA-SISRLSKLECLNLNGCKKLQSLPP 841 (1170)
Q Consensus 797 ~~l~sL~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~ 841 (1170)
..+++|+.|++++|+++.+|. .+..+++|+.|++++|+.....|.
T Consensus 491 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 491 NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred hcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 999999999999999998874 578999999999999986554443
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.2e-32 Score=343.76 Aligned_cols=348 Identities=17% Similarity=0.190 Sum_probs=286.1
Q ss_pred CcccccccccCCCCccEEEeeCCCCCC-----------------ccCcccc---CCcccEEEecCCCCCCccccccCCCC
Q 045458 504 RLREIHPSLLLHSKLVILNLTGCTSLA-----------------TLPGKIF---MKSVKKLVLSGCSKLKKFPKIVGNME 563 (1170)
Q Consensus 504 ~l~~~~~~i~~l~~L~~L~L~~c~~l~-----------------~lp~~~~---l~~L~~L~L~~~~~~~~l~~~l~~l~ 563 (1170)
.+..+|..++.+++|+.|++++|.... .+|..+. +++|++|+|++|.....+|..+++++
T Consensus 436 ~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~ 515 (876)
T 4ecn_A 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP 515 (876)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCS
T ss_pred cccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCC
Confidence 445589999999999999999987555 2888763 99999999999999999999999999
Q ss_pred CCcEEEecCcc-CC--ccCcchhcCC-------CCCEEeccCCCCCCcCcc--ccCCCCcccEEEeeCCCCCCCcchhhc
Q 045458 564 CLSKLLLDGTA-IG--ELPLSIELLS-------KLVSLDLNNCKNFKNLPV--TISSLKCLRSLVLSGCSKLKKFPEIVE 631 (1170)
Q Consensus 564 ~L~~L~L~~~~-i~--~l~~~i~~l~-------~L~~L~L~~~~~l~~lp~--~l~~l~~L~~L~L~~~~~~~~~p~~~~ 631 (1170)
+|+.|++++|. +. .+|..+..++ +|+.|++++|... .+|. .+.++++|+.|++++|... .+| .+.
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~ 592 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFG 592 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCC
T ss_pred CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhc
Confidence 99999999998 76 4888777665 9999999999876 8998 8999999999999999876 888 889
Q ss_pred CCcccCeEeccCcCCCccCccccCCCC-CCEEeccCCcCCccccccCCCCCC--CCEEEeeCcCCCCCCcc---ccC--C
Q 045458 632 SMEDLSELFLDGTSITEVPSSIELLTG-LNVLNLNDCKNLVRIPDSINGLKS--LQSLNLSGCFKLENVPE---TLG--Q 703 (1170)
Q Consensus 632 ~l~~L~~L~l~~~~l~~lp~~i~~l~~-L~~L~L~~~~~l~~lp~~l~~l~~--L~~L~L~~c~~l~~l~~---~l~--~ 703 (1170)
.+++|+.|++++|.+..+|..+..+++ |+.|++++|... .+|..+..++. |+.|++++|.....+|. .++ .
T Consensus 593 ~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~ 671 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671 (876)
T ss_dssp TTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred CCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhcccc
Confidence 999999999999999999999999999 999999999855 88888777654 99999999987665543 223 3
Q ss_pred CCCCcEEEccCccCCCCCcccc-CCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEec
Q 045458 704 VESLEELHISGTAIRQPPSGIF-HMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDL 782 (1170)
Q Consensus 704 l~~L~~L~L~~~~i~~lp~~l~-~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~L 782 (1170)
+++|+.|++++|.++.+|..+. .+++|+.|+|++|.....+.... ...++.+.++++|+.|+|
T Consensus 672 ~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~----------------~~~~~~l~nl~~L~~L~L 735 (876)
T 4ecn_A 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSL----------------KPKDGNYKNTYLLTTIDL 735 (876)
T ss_dssp CCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSS----------------SCTTSCCTTGGGCCEEEC
T ss_pred CCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHh----------------ccccccccccCCccEEEC
Confidence 4589999999999999998876 79999999999997552111110 011122345669999999
Q ss_pred cCCCCCCCCCcCccC--CCCCCCEEECcCCCCcccchhhhcCCCCCEeeccC------ccCCCcCCCC---Ccccceeec
Q 045458 783 SDCDLGEGFIPNDIG--NLRSLKVLCLSNNSFVSLPASISRLSKLECLNLNG------CKKLQSLPPL---PARMRIASV 851 (1170)
Q Consensus 783 s~c~l~~~~~~~~l~--~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~------c~~L~~lp~l---p~sL~~L~i 851 (1170)
++|++. .+|..+. .+++|+.|+|++|+++.+|..+..+++|+.|+|++ |.....+|.. .++|+.|++
T Consensus 736 s~N~L~--~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~L 813 (876)
T 4ecn_A 736 RFNKLT--SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813 (876)
T ss_dssp CSSCCC--CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred CCCCCc--cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEEC
Confidence 999996 4888887 99999999999999999999999999999999987 5556666742 468999999
Q ss_pred cCCcCCcccCCcccccccccceee
Q 045458 852 NGCASLETLSDPLELNKLKDFEIQ 875 (1170)
Q Consensus 852 ~~C~~L~~l~~~~~~~~L~~l~i~ 875 (1170)
++|.- ..+|.... ++|+.+++.
T Consensus 814 s~N~L-~~Ip~~l~-~~L~~LdLs 835 (876)
T 4ecn_A 814 GSNDI-RKVDEKLT-PQLYILDIA 835 (876)
T ss_dssp CSSCC-CBCCSCCC-SSSCEEECC
T ss_pred CCCCC-CccCHhhc-CCCCEEECC
Confidence 99864 88876533 566666653
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.1e-31 Score=330.09 Aligned_cols=417 Identities=16% Similarity=0.195 Sum_probs=308.3
Q ss_pred CCccEEeecCcccC----CchhcccCCceEEEcCCCCCCCCCC-CC-CCCceeEEEccCCChHHHhhc-CCCCCCCcEEE
Q 045458 403 TNLRLLGICNLKLP----EGLECLSNKLRLLDWPGYPLKSLPP-NL-QLDKTIEFKMLCSRIEELWKG-IKSLNMLKVMK 475 (1170)
Q Consensus 403 ~~Lr~L~l~~~~l~----~~~~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~s~i~~L~~~-l~~l~~L~~L~ 475 (1170)
++|+.|+++++.+. ..+..++ +|++|++++|.++.++. .| .+.+|++|++++|.+..++.. +..+++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACA-NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCC-cccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 68999999988753 3445553 79999999999988875 34 889999999999999887654 88999999999
Q ss_pred cCCCCCCC-cC-CCCCCCCCccEEEeeccCCccccc-ccccCCCCccEEEeeCCCCCCccCcccc-CCcccEEEecCCCC
Q 045458 476 VSYSQSLI-KI-PDFTGVPNLEKLYLEGCTRLREIH-PSLLLHSKLVILNLTGCTSLATLPGKIF-MKSVKKLVLSGCSK 551 (1170)
Q Consensus 476 Ls~~~~l~-~~-~~~~~l~~L~~L~L~~~~~l~~~~-~~i~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~~~~ 551 (1170)
+++|.... .. +.+.++++|++|++++|.....++ ..+..+++|+.|++++|......|..+. +++|++|++++|..
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 99987543 23 458889999999999987677766 4788899999999999877666776666 88999999998865
Q ss_pred CCcccc-ccCCCCCCcEEEecCccCCccC---cc-hhcCCCCCEEeccCCCCCCc----Ccc------------------
Q 045458 552 LKKFPK-IVGNMECLSKLLLDGTAIGELP---LS-IELLSKLVSLDLNNCKNFKN----LPV------------------ 604 (1170)
Q Consensus 552 ~~~l~~-~l~~l~~L~~L~L~~~~i~~l~---~~-i~~l~~L~~L~L~~~~~l~~----lp~------------------ 604 (1170)
. .+|. .++.+++|++|++++|.+..++ .. ...+++|+.|++++|..... ++.
T Consensus 185 ~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~ 263 (549)
T 2z81_A 185 A-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263 (549)
T ss_dssp T-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred c-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence 4 3343 3456889999999998887652 11 13355566666655532211 111
Q ss_pred ------------ccCCCCcccEEEeeCCCCCC-----CcchhhcCCcccCeEeccCcCCCccCccc-cCCCCCCEEeccC
Q 045458 605 ------------TISSLKCLRSLVLSGCSKLK-----KFPEIVESMEDLSELFLDGTSITEVPSSI-ELLTGLNVLNLND 666 (1170)
Q Consensus 605 ------------~l~~l~~L~~L~L~~~~~~~-----~~p~~~~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~L~~ 666 (1170)
.+..+.+|+.|.+.++.... .++.......+|+.|++++|.+..+|..+ ..+++|+.|++++
T Consensus 264 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~ 343 (549)
T 2z81_A 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE 343 (549)
T ss_dssp ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCS
T ss_pred cccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccC
Confidence 22344555555555543221 12222344568899999999999999887 5799999999999
Q ss_pred CcCCcccc---ccCCCCCCCCEEEeeCcCCCCCCc---cccCCCCCCcEEEccCccCCCCCccccCCCCCcEEEecCCCC
Q 045458 667 CKNLVRIP---DSINGLKSLQSLNLSGCFKLENVP---ETLGQVESLEELHISGTAIRQPPSGIFHMKNLKALYFRGCKG 740 (1170)
Q Consensus 667 ~~~l~~lp---~~l~~l~~L~~L~L~~c~~l~~l~---~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~ 740 (1170)
|...+.+| ..+..+++|+.|++++|... .++ ..+..+++|+.|++++|.++.+|..+..+++|++|++++|..
T Consensus 344 N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l 422 (549)
T 2z81_A 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI 422 (549)
T ss_dssp SCCCHHHHHHHTCTTSSTTCCEEECTTSCCC-CHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCC
T ss_pred CccccccccchhhhhccccCcEEEccCCccc-ccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCc
Confidence 98877664 34778899999999998543 333 457788999999999999999999999999999999999874
Q ss_pred CCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCcccchhhh
Q 045458 741 SPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVSLPASIS 820 (1170)
Q Consensus 741 ~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~lp~~i~ 820 (1170)
.. +|..+ .++|+.|++++|++.. + ...+++|+.|+|++|+++.+|. ..
T Consensus 423 ~~------------------------l~~~~--~~~L~~L~Ls~N~l~~--~---~~~l~~L~~L~Ls~N~l~~ip~-~~ 470 (549)
T 2z81_A 423 RV------------------------VKTCI--PQTLEVLDVSNNNLDS--F---SLFLPRLQELYISRNKLKTLPD-AS 470 (549)
T ss_dssp SC------------------------CCTTS--CTTCSEEECCSSCCSC--C---CCCCTTCCEEECCSSCCSSCCC-GG
T ss_pred cc------------------------ccchh--cCCceEEECCCCChhh--h---cccCChhcEEECCCCccCcCCC-cc
Confidence 42 11111 2479999999998853 2 2578899999999999999986 46
Q ss_pred cCCCCCEeeccCccCCCcCCC----CCcccceeeccCCc
Q 045458 821 RLSKLECLNLNGCKKLQSLPP----LPARMRIASVNGCA 855 (1170)
Q Consensus 821 ~l~~L~~L~L~~c~~L~~lp~----lp~sL~~L~i~~C~ 855 (1170)
.+++|+.|+|++|+. +.+|. -.++|+.|++++|+
T Consensus 471 ~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 471 LFPVLLVMKISRNQL-KSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp GCTTCCEEECCSSCC-CCCCTTGGGGCTTCCEEECCSSC
T ss_pred cCccCCEEecCCCcc-CCcCHHHHhcCcccCEEEecCCC
Confidence 789999999999754 44443 23567888888776
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=3.5e-31 Score=323.09 Aligned_cols=415 Identities=20% Similarity=0.140 Sum_probs=263.8
Q ss_pred EEeecCcccCCchhcccCCceEEEcCCCCCCCCCC-CC-CCCceeEEEccCCChHHH-hhcCCCCCCCcEEEcCCCCCCC
Q 045458 407 LLGICNLKLPEGLECLSNKLRLLDWPGYPLKSLPP-NL-QLDKTIEFKMLCSRIEEL-WKGIKSLNMLKVMKVSYSQSLI 483 (1170)
Q Consensus 407 ~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~s~i~~L-~~~l~~l~~L~~L~Ls~~~~l~ 483 (1170)
+|+++++.+..-...++.+|++|++++|.++.++. .+ .+.+|++|++++|++..+ |..+..+++|++|++++|.. .
T Consensus 4 ~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~ 82 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL-V 82 (520)
T ss_dssp EEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC-C
T ss_pred eEecCCCCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce-e
Confidence 34444444333222333455555555555555543 22 455555555555555544 34455555555555555542 2
Q ss_pred cCCCCCCCCCccEEEeeccCCcc-cccccccCCCCccEEEeeCCCCCCccCccccCCcc--cEEEecCCCC--CCcccc-
Q 045458 484 KIPDFTGVPNLEKLYLEGCTRLR-EIHPSLLLHSKLVILNLTGCTSLATLPGKIFMKSV--KKLVLSGCSK--LKKFPK- 557 (1170)
Q Consensus 484 ~~~~~~~l~~L~~L~L~~~~~l~-~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L--~~L~L~~~~~--~~~l~~- 557 (1170)
.+|.. .+++|++|++++|.... .+|..++.+++|++|++++|.... .....+++| +.|++++|.. ....|.
T Consensus 83 ~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~ 159 (520)
T 2z7x_B 83 KISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEG 159 (520)
T ss_dssp EEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTT
T ss_pred ecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccccccc
Confidence 34433 45555555555543322 234455555555555555543221 111113444 5555555544 233333
Q ss_pred -------------------------ccCCCCCCcEEEecCcc-------CCccCcchhcCCCCCEEeccCCCCCCcCccc
Q 045458 558 -------------------------IVGNMECLSKLLLDGTA-------IGELPLSIELLSKLVSLDLNNCKNFKNLPVT 605 (1170)
Q Consensus 558 -------------------------~l~~l~~L~~L~L~~~~-------i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~ 605 (1170)
.+.++++|+.|++++|. +......+..+++|+.|++++|......+..
T Consensus 160 l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~ 239 (520)
T 2z7x_B 160 LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR 239 (520)
T ss_dssp TTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHH
T ss_pred ccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHH
Confidence 34456677777777664 2222225677778888887776543221111
Q ss_pred c---CCCCcccEEEeeCCCCCCCcchhh-----cCCcccCeEeccCcCCCccC-ccccCC---CCCCEEeccCCcCCccc
Q 045458 606 I---SSLKCLRSLVLSGCSKLKKFPEIV-----ESMEDLSELFLDGTSITEVP-SSIELL---TGLNVLNLNDCKNLVRI 673 (1170)
Q Consensus 606 l---~~l~~L~~L~L~~~~~~~~~p~~~-----~~l~~L~~L~l~~~~l~~lp-~~i~~l---~~L~~L~L~~~~~l~~l 673 (1170)
+ ...++|+.|++++|.....+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|......
T Consensus 240 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~ 318 (520)
T 2z7x_B 240 ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML 318 (520)
T ss_dssp HHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC
T ss_pred HHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc
Confidence 1 123588999999988777788877 8899999999999988 777 455544 67999999998754322
Q ss_pred cccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCC---CccccCCCCCcEEEecCCCCCCCCCCcccC
Q 045458 674 PDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQP---PSGIFHMKNLKALYFRGCKGSPSSTSWSRH 750 (1170)
Q Consensus 674 p~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~l---p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~ 750 (1170)
....+++|++|++++|...+..|..++.+++|+.|++++|.++.+ |..+..+++|++|++++|....
T Consensus 319 --~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~-------- 388 (520)
T 2z7x_B 319 --CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY-------- 388 (520)
T ss_dssp --CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC--------
T ss_pred --chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc--------
Confidence 125788999999999988777888899999999999999999854 4668889999999999987442
Q ss_pred cccccccccCCCCcccCCC-CCCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCcccchhhhcCCCCCEee
Q 045458 751 FPFNLIKRSLDPVAFSFPP-SLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVSLPASISRLSKLECLN 829 (1170)
Q Consensus 751 ~~l~~~~~~~~~~~~~lp~-~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~ 829 (1170)
.+|. .+..+++|+.|++++|.+. +.+|..+. ++|+.|++++|+++.+|..+..+++|+.|+
T Consensus 389 ---------------~l~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~ 450 (520)
T 2z7x_B 389 ---------------DEKKGDCSWTKSLLSLNMSSNILT-DTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELN 450 (520)
T ss_dssp ---------------CGGGCSCCCCTTCCEEECCSSCCC-GGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEE
T ss_pred ---------------ccccchhccCccCCEEECcCCCCC-cchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEE
Confidence 1222 2567789999999999885 34444443 789999999999999998888999999999
Q ss_pred ccCccCCCcCCCC----CcccceeeccCCc
Q 045458 830 LNGCKKLQSLPPL----PARMRIASVNGCA 855 (1170)
Q Consensus 830 L~~c~~L~~lp~l----p~sL~~L~i~~C~ 855 (1170)
+++|+ ++.+|.. .++|+.|++.+++
T Consensus 451 L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 451 VASNQ-LKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCc-CCccCHHHhccCCcccEEECcCCC
Confidence 99974 5677752 2456677776654
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=8.2e-30 Score=313.34 Aligned_cols=455 Identities=16% Similarity=0.153 Sum_probs=336.8
Q ss_pred EeecCcccCCchhcccCCceEEEcCCCCCCCCCC-CC-CCCceeEEEccCCChHHHh-hcCCCCCCCcEEEcCCCCCCCc
Q 045458 408 LGICNLKLPEGLECLSNKLRLLDWPGYPLKSLPP-NL-QLDKTIEFKMLCSRIEELW-KGIKSLNMLKVMKVSYSQSLIK 484 (1170)
Q Consensus 408 L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~s~i~~L~-~~l~~l~~L~~L~Ls~~~~l~~ 484 (1170)
.+.+++.+..-+..++.+|++|+++++.++.++. .+ .+.+|++|++++|++..++ ..+..+++|++|++++|.....
T Consensus 10 c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 89 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL 89 (549)
T ss_dssp EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC
T ss_pred EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc
Confidence 3444555444444456789999999999998854 45 8999999999999999876 6799999999999999986655
Q ss_pred CCC-CCCCCCccEEEeeccCCcc-cccccccCCCCccEEEeeCCCCCCccCc-ccc-CCcccEEEecCCCCCCccccccC
Q 045458 485 IPD-FTGVPNLEKLYLEGCTRLR-EIHPSLLLHSKLVILNLTGCTSLATLPG-KIF-MKSVKKLVLSGCSKLKKFPKIVG 560 (1170)
Q Consensus 485 ~~~-~~~l~~L~~L~L~~~~~l~-~~~~~i~~l~~L~~L~L~~c~~l~~lp~-~~~-l~~L~~L~L~~~~~~~~l~~~l~ 560 (1170)
.|. |+++++|++|++++|.... ..+..+..+++|++|++++|..+..+|. .+. +++|++|++++|......|..++
T Consensus 90 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 169 (549)
T 2z81_A 90 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169 (549)
T ss_dssp CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence 555 8999999999999986443 4567899999999999999887777774 344 99999999999998888999999
Q ss_pred CCCCCcEEEecCccCCccCcch-hcCCCCCEEeccCCCCCCcC--cc-ccCCCCcccEEEeeCCCCCCC----cchhhcC
Q 045458 561 NMECLSKLLLDGTAIGELPLSI-ELLSKLVSLDLNNCKNFKNL--PV-TISSLKCLRSLVLSGCSKLKK----FPEIVES 632 (1170)
Q Consensus 561 ~l~~L~~L~L~~~~i~~l~~~i-~~l~~L~~L~L~~~~~l~~l--p~-~l~~l~~L~~L~L~~~~~~~~----~p~~~~~ 632 (1170)
++++|++|+++.+.+..+|..+ ..+++|+.|++++|...... |. ....+++|+.|++++|..... ++..+..
T Consensus 170 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~ 249 (549)
T 2z81_A 170 SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY 249 (549)
T ss_dssp TCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGG
T ss_pred ccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhh
Confidence 9999999999999998888765 56999999999999765431 21 334678999999999865543 3344567
Q ss_pred CcccCeEeccCcCCCccC-------ccccCCCCCCEEeccCCcCCcc-----ccccCCCCCCCCEEEeeCcCCCCCCccc
Q 045458 633 MEDLSELFLDGTSITEVP-------SSIELLTGLNVLNLNDCKNLVR-----IPDSINGLKSLQSLNLSGCFKLENVPET 700 (1170)
Q Consensus 633 l~~L~~L~l~~~~l~~lp-------~~i~~l~~L~~L~L~~~~~l~~-----lp~~l~~l~~L~~L~L~~c~~l~~l~~~ 700 (1170)
+++|+.+++++|.+..++ ..+..+++|+.|.+.++..... ++.....+++|+.|++++|. +..+|..
T Consensus 250 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~ 328 (549)
T 2z81_A 250 ILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCS 328 (549)
T ss_dssp CTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHH
T ss_pred hccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHH
Confidence 889999999998876543 2356788999999988754322 11112335789999999985 5677776
Q ss_pred c-CCCCCCcEEEccCccCCCC----CccccCCCCCcEEEecCCCCCCCC---CCcccCcccccccccCCCCcccCCCCCC
Q 045458 701 L-GQVESLEELHISGTAIRQP----PSGIFHMKNLKALYFRGCKGSPSS---TSWSRHFPFNLIKRSLDPVAFSFPPSLS 772 (1170)
Q Consensus 701 l-~~l~~L~~L~L~~~~i~~l----p~~l~~l~~L~~L~L~~c~~~~~~---~~~~~~~~l~~~~~~~~~~~~~lp~~l~ 772 (1170)
+ ..+++|+.|++++|.++.. +..+..+++|++|++++|...... ..+.....+..++++.|.+. .+|..+.
T Consensus 329 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 407 (549)
T 2z81_A 329 FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQ 407 (549)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCC
T ss_pred HHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhc
Confidence 6 4689999999999998853 334678999999999999865321 11334445556666666655 5677777
Q ss_pred CCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCcccchhhhcCCCCCEeeccCccCCCcCCCC--Ccccceee
Q 045458 773 GLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVSLPASISRLSKLECLNLNGCKKLQSLPPL--PARMRIAS 850 (1170)
Q Consensus 773 ~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l--p~sL~~L~ 850 (1170)
.+++|+.|++++|.+.. +|..+ .++|+.|++++|+++.++ ..+++|++|+|++| .++.+|.. .++|+.|+
T Consensus 408 ~~~~L~~L~Ls~N~l~~--l~~~~--~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~ 479 (549)
T 2z81_A 408 WPEKMRFLNLSSTGIRV--VKTCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRN-KLKTLPDASLFPVLLVMK 479 (549)
T ss_dssp CCTTCCEEECTTSCCSC--CCTTS--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSSCCCGGGCTTCCEEE
T ss_pred ccccccEEECCCCCccc--ccchh--cCCceEEECCCCChhhhc---ccCChhcEEECCCC-ccCcCCCcccCccCCEEe
Confidence 77777777777777643 33322 257777777777777655 46777888888776 45567652 45677777
Q ss_pred ccCCcCCcccCCc--ccccccccce
Q 045458 851 VNGCASLETLSDP--LELNKLKDFE 873 (1170)
Q Consensus 851 i~~C~~L~~l~~~--~~~~~L~~l~ 873 (1170)
+++| .++.++.. ..+++|+.++
T Consensus 480 Ls~N-~l~~~~~~~~~~l~~L~~L~ 503 (549)
T 2z81_A 480 ISRN-QLKSVPDGIFDRLTSLQKIW 503 (549)
T ss_dssp CCSS-CCCCCCTTGGGGCTTCCEEE
T ss_pred cCCC-ccCCcCHHHHhcCcccCEEE
Confidence 7776 45554431 2344444443
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=2e-29 Score=307.47 Aligned_cols=412 Identities=19% Similarity=0.171 Sum_probs=305.7
Q ss_pred eEEEcCCCCCCCCCCCCCCCceeEEEccCCChHHHh-hcCCCCCCCcEEEcCCCCCCCcCC-CCCCCCCccEEEeeccCC
Q 045458 427 RLLDWPGYPLKSLPPNLQLDKTIEFKMLCSRIEELW-KGIKSLNMLKVMKVSYSQSLIKIP-DFTGVPNLEKLYLEGCTR 504 (1170)
Q Consensus 427 r~L~l~~~~l~~lp~~~~l~~L~~L~L~~s~i~~L~-~~l~~l~~L~~L~Ls~~~~l~~~~-~~~~l~~L~~L~L~~~~~ 504 (1170)
++|+++++.++.+|..+. .+|++|++++|.+..++ ..+..+++|++|++++|......| .|.++++|++|++++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~- 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK- 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-
Confidence 689999999999998876 89999999999999876 678999999999999998665545 48999999999999974
Q ss_pred cccccccccCCCCccEEEeeCCCCCC-ccCcccc-CCcccEEEecCCCCCCccccccCCCCCC--cEEEecCccC---Cc
Q 045458 505 LREIHPSLLLHSKLVILNLTGCTSLA-TLPGKIF-MKSVKKLVLSGCSKLKKFPKIVGNMECL--SKLLLDGTAI---GE 577 (1170)
Q Consensus 505 l~~~~~~i~~l~~L~~L~L~~c~~l~-~lp~~~~-l~~L~~L~L~~~~~~~~l~~~l~~l~~L--~~L~L~~~~i---~~ 577 (1170)
+..+|.. .+++|++|++++|.... .+|..+. +++|++|++++|.... ..+..+++| ++|++++|.+ ..
T Consensus 81 l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~ 155 (520)
T 2z7x_B 81 LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKE 155 (520)
T ss_dssp CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSC
T ss_pred eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccc
Confidence 5577777 89999999999987654 4666666 9999999999987654 456777778 9999999987 44
Q ss_pred cCcchhcCC-CCCEEeccCCCCCCcCcc-------------------------------ccCCCCcccEEEeeCCCCCCC
Q 045458 578 LPLSIELLS-KLVSLDLNNCKNFKNLPV-------------------------------TISSLKCLRSLVLSGCSKLKK 625 (1170)
Q Consensus 578 l~~~i~~l~-~L~~L~L~~~~~l~~lp~-------------------------------~l~~l~~L~~L~L~~~~~~~~ 625 (1170)
.|..+..+. +...+++++|.....++. .+..+++|+.|++++|.....
T Consensus 156 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~ 235 (520)
T 2z7x_B 156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235 (520)
T ss_dssp CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHH
T ss_pred ccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHH
Confidence 455554433 122334444443333221 334444555555544432221
Q ss_pred cchhh---cCCcccCeEeccCcCCC-ccCccc-----cCCCCCCEEeccCCcCCcccc-ccCCCC---CCCCEEEeeCcC
Q 045458 626 FPEIV---ESMEDLSELFLDGTSIT-EVPSSI-----ELLTGLNVLNLNDCKNLVRIP-DSINGL---KSLQSLNLSGCF 692 (1170)
Q Consensus 626 ~p~~~---~~l~~L~~L~l~~~~l~-~lp~~i-----~~l~~L~~L~L~~~~~l~~lp-~~l~~l---~~L~~L~L~~c~ 692 (1170)
.+..+ ...++|+.|++++|.+. .+|..+ ..+++|+.+++++|.. .+| ..+..+ .+|+.|++++|.
T Consensus 236 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~ 313 (520)
T 2z7x_B 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTR 313 (520)
T ss_dssp HHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSC
T ss_pred HHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCc
Confidence 11111 01358899999999888 889888 8999999999999887 555 334333 679999999997
Q ss_pred CCCCCccccCCCCCCcEEEccCccCCC-CCccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCC
Q 045458 693 KLENVPETLGQVESLEELHISGTAIRQ-PPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSL 771 (1170)
Q Consensus 693 ~l~~l~~~l~~l~~L~~L~L~~~~i~~-lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l 771 (1170)
..... ....+++|++|++++|.++. .|..+..+++|++|++++|.... ...+|..+
T Consensus 314 l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~---------------------l~~~~~~~ 370 (520)
T 2z7x_B 314 MVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE---------------------LSKIAEMT 370 (520)
T ss_dssp CCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCB---------------------HHHHHHHH
T ss_pred ccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCc---------------------cccchHHH
Confidence 54322 12578999999999999997 68889999999999999998542 01234457
Q ss_pred CCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCc-ccchhhhcCCCCCEeeccCccCCCcCCC---CCcccc
Q 045458 772 SGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFV-SLPASISRLSKLECLNLNGCKKLQSLPP---LPARMR 847 (1170)
Q Consensus 772 ~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~---lp~sL~ 847 (1170)
..+++|+.|++++|.+.....+..+..+++|+.|++++|.++ .+|..+. ++|+.|++++|. ++.+|. -.++|+
T Consensus 371 ~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~~l~~L~ 447 (520)
T 2z7x_B 371 TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLEALQ 447 (520)
T ss_dssp TTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC-CCCCCGGGGGCTTCC
T ss_pred hhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc-ccccchhhhcCCCCC
Confidence 788999999999999853233345888999999999999996 4554442 799999999984 567775 246899
Q ss_pred eeeccCCcCCcccCCc--cccccccccee
Q 045458 848 IASVNGCASLETLSDP--LELNKLKDFEI 874 (1170)
Q Consensus 848 ~L~i~~C~~L~~l~~~--~~~~~L~~l~i 874 (1170)
.|++++| .++.++.. ..+++|+.+++
T Consensus 448 ~L~L~~N-~l~~l~~~~~~~l~~L~~L~l 475 (520)
T 2z7x_B 448 ELNVASN-QLKSVPDGIFDRLTSLQKIWL 475 (520)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred EEECCCC-cCCccCHHHhccCCcccEEEC
Confidence 9999998 57777753 23445555444
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=6.7e-29 Score=305.58 Aligned_cols=416 Identities=14% Similarity=0.088 Sum_probs=273.4
Q ss_pred CccEEeecCcccCCchhcccCCceEEEcCCCCCCCCCC-CC-CCCceeEEEccCCChHHH-hhcCCCCCCCcEEEcCCCC
Q 045458 404 NLRLLGICNLKLPEGLECLSNKLRLLDWPGYPLKSLPP-NL-QLDKTIEFKMLCSRIEEL-WKGIKSLNMLKVMKVSYSQ 480 (1170)
Q Consensus 404 ~Lr~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~s~i~~L-~~~l~~l~~L~~L~Ls~~~ 480 (1170)
..++++++++.+..-+..++.+|++|++++|.++.+|. .| .+.+|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 111 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc
Confidence 34677777776655444555677788888777777774 44 777778888887777776 4567777778888887776
Q ss_pred CCCcCCCCCCCCCccEEEeeccCCcc-cccccccCCCCccEEEeeCCCCCCccCccccCCcc--cEEEecCCCC--CCcc
Q 045458 481 SLIKIPDFTGVPNLEKLYLEGCTRLR-EIHPSLLLHSKLVILNLTGCTSLATLPGKIFMKSV--KKLVLSGCSK--LKKF 555 (1170)
Q Consensus 481 ~l~~~~~~~~l~~L~~L~L~~~~~l~-~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L--~~L~L~~~~~--~~~l 555 (1170)
. ..+|.. .+++|++|++++|.... .+|..+..+++|++|++++|..... ....+++| ++|++++|.. ....
T Consensus 112 l-~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~ 187 (562)
T 3a79_B 112 L-QNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGE 187 (562)
T ss_dssp C-CEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSS
T ss_pred C-CccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccC
Confidence 3 355555 77778888887765333 2346777777788888777543321 11114444 7777777765 4444
Q ss_pred ccccCC--------------------------CCCCcEEEecCccC-----CccCcchhcCCCCCEEeccCCCCCCc---
Q 045458 556 PKIVGN--------------------------MECLSKLLLDGTAI-----GELPLSIELLSKLVSLDLNNCKNFKN--- 601 (1170)
Q Consensus 556 ~~~l~~--------------------------l~~L~~L~L~~~~i-----~~l~~~i~~l~~L~~L~L~~~~~l~~--- 601 (1170)
|..+.. +++|+.|++++|.. ......+..+++|+.|++.++.....
T Consensus 188 ~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~ 267 (562)
T 3a79_B 188 TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV 267 (562)
T ss_dssp CCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHH
T ss_pred cccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHH
Confidence 444433 44555556555531 11222345555555555554432211
Q ss_pred -CccccCCCCcccEEEeeCCCCCCCcchhh-----cCCcccCeEeccCcCCCccCc-cccC---CCCCCEEeccCCcCCc
Q 045458 602 -LPVTISSLKCLRSLVLSGCSKLKKFPEIV-----ESMEDLSELFLDGTSITEVPS-SIEL---LTGLNVLNLNDCKNLV 671 (1170)
Q Consensus 602 -lp~~l~~l~~L~~L~L~~~~~~~~~p~~~-----~~l~~L~~L~l~~~~l~~lp~-~i~~---l~~L~~L~L~~~~~l~ 671 (1170)
++..+ ..++|++|++++|.....+|..+ ..++.|+.+++..+.+ .+|. .+.. ..+|+.|++++|....
T Consensus 268 ~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~ 345 (562)
T 3a79_B 268 KLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIH 345 (562)
T ss_dssp HHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred HHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCccc
Confidence 11111 23488899999888776777766 6666777777776666 5552 2222 2678889888886532
Q ss_pred cccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCCC---ccccCCCCCcEEEecCCCCCCCCCCcc
Q 045458 672 RIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQPP---SGIFHMKNLKALYFRGCKGSPSSTSWS 748 (1170)
Q Consensus 672 ~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~lp---~~l~~l~~L~~L~L~~c~~~~~~~~~~ 748 (1170)
.. ....+++|+.|++++|......|..++.+++|+.|++++|.++.++ ..+..+++|++|++++|....
T Consensus 346 ~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~------ 417 (562)
T 3a79_B 346 MV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS------ 417 (562)
T ss_dssp CC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS------
T ss_pred cc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC------
Confidence 21 1256888999999988877778888888899999999998888665 457788899999998887432
Q ss_pred cCcccccccccCCCCcccCCC-CCCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCcccchhhhcCCCCCE
Q 045458 749 RHFPFNLIKRSLDPVAFSFPP-SLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVSLPASISRLSKLEC 827 (1170)
Q Consensus 749 ~~~~l~~~~~~~~~~~~~lp~-~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~ 827 (1170)
.+|. .+..+++|+.|++++|.+. +.+|..+. ++|+.|+|++|+++.+|..+..+++|+.
T Consensus 418 -----------------~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~ 477 (562)
T 3a79_B 418 -----------------HAYDRTCAWAESILVLNLSSNMLT-GSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQE 477 (562)
T ss_dssp -----------------CCSSCCCCCCTTCCEEECCSSCCC-GGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSE
T ss_pred -----------------ccChhhhcCcccCCEEECCCCCCC-cchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCE
Confidence 1222 2566788888888888874 34444333 6888888888888888888888888888
Q ss_pred eeccCccCCCcCCCC----CcccceeeccCC
Q 045458 828 LNLNGCKKLQSLPPL----PARMRIASVNGC 854 (1170)
Q Consensus 828 L~L~~c~~L~~lp~l----p~sL~~L~i~~C 854 (1170)
|+|++|+ ++.+|.- .++|+.|+++++
T Consensus 478 L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 478 LNVASNQ-LKSVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp EECCSSC-CCCCCTTSTTTCTTCCCEECCSC
T ss_pred EECCCCC-CCCCCHHHHhcCCCCCEEEecCC
Confidence 8888864 5566652 235556666554
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=1.2e-28 Score=295.55 Aligned_cols=375 Identities=18% Similarity=0.132 Sum_probs=243.0
Q ss_pred eEEEcCCCCCCCCCCCCCCCceeEEEccCCChHHH-hhcCCCCCCCcEEEcCCCCCCCcCC--CCCCCCCccEEEeeccC
Q 045458 427 RLLDWPGYPLKSLPPNLQLDKTIEFKMLCSRIEEL-WKGIKSLNMLKVMKVSYSQSLIKIP--DFTGVPNLEKLYLEGCT 503 (1170)
Q Consensus 427 r~L~l~~~~l~~lp~~~~l~~L~~L~L~~s~i~~L-~~~l~~l~~L~~L~Ls~~~~l~~~~--~~~~l~~L~~L~L~~~~ 503 (1170)
+.+++++..++.+|. -+.+|++|++++|.+..+ |..+..+++|++|++++|.....++ .|.++++|++|++++|.
T Consensus 13 ~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 13 YNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp TEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred cccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 356666777777776 346777777777777766 5667778888888888877654443 37778888888888776
Q ss_pred CcccccccccCCCCccEEEeeCCCCCCccCcc--cc-CCcccEEEecCCCCCCccccc-cCCCCCCcEEEecCccCCcc-
Q 045458 504 RLREIHPSLLLHSKLVILNLTGCTSLATLPGK--IF-MKSVKKLVLSGCSKLKKFPKI-VGNMECLSKLLLDGTAIGEL- 578 (1170)
Q Consensus 504 ~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~--~~-l~~L~~L~L~~~~~~~~l~~~-l~~l~~L~~L~L~~~~i~~l- 578 (1170)
.....|..+..+++|++|++++|......+.. +. +++|++|++++|......|.. ++++++|++|++++|.+..+
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC
Confidence 55555667777777777777776544333332 22 667777777776655555543 66677777777777766544
Q ss_pred CcchhcC--CCCCEEeccCCCCCCcCcc--------ccCCCCcccEEEeeCCCCCCCcchhhcCC---cccCeEeccCcC
Q 045458 579 PLSIELL--SKLVSLDLNNCKNFKNLPV--------TISSLKCLRSLVLSGCSKLKKFPEIVESM---EDLSELFLDGTS 645 (1170)
Q Consensus 579 ~~~i~~l--~~L~~L~L~~~~~l~~lp~--------~l~~l~~L~~L~L~~~~~~~~~p~~~~~l---~~L~~L~l~~~~ 645 (1170)
+..+..+ .+|+.|++++|.....-+. .+..+++|+.|++++|......|..+... .+|+.|+++++.
T Consensus 171 ~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 250 (455)
T 3v47_A 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250 (455)
T ss_dssp TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCT
T ss_pred hhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccc
Confidence 3334433 5666666666654332221 12345566666666666555555444332 556666666554
Q ss_pred CCccCccccCCCCCCEEeccCCcCCccccccCC--CCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCC-Cc
Q 045458 646 ITEVPSSIELLTGLNVLNLNDCKNLVRIPDSIN--GLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQP-PS 722 (1170)
Q Consensus 646 l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~--~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~l-p~ 722 (1170)
..........++.+. +..+. ..++|+.|++++|......|..++.+++|+.|++++|.++.+ |.
T Consensus 251 ~~~~~~~~~~~~~~~-------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 317 (455)
T 3v47_A 251 NMGSSFGHTNFKDPD-------------NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN 317 (455)
T ss_dssp TTSCCTTCCSSCCCC-------------TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT
T ss_pred ccccccchhhhccCc-------------ccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh
Confidence 432211111111100 00111 235777888887776666677777788888888888887765 45
Q ss_pred cccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCccCCCCCC
Q 045458 723 GIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSL 802 (1170)
Q Consensus 723 ~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL 802 (1170)
.+..+++|++|++++|.... ..|..+..+++|+.|+|++|.+. +..|..+..+++|
T Consensus 318 ~~~~l~~L~~L~Ls~N~l~~-----------------------~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L 373 (455)
T 3v47_A 318 AFWGLTHLLKLNLSQNFLGS-----------------------IDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNL 373 (455)
T ss_dssp TTTTCTTCCEEECCSSCCCE-----------------------ECGGGGTTCTTCCEEECCSSCCC-EECTTTTTTCTTC
T ss_pred HhcCcccCCEEECCCCccCC-----------------------cChhHhcCcccCCEEECCCCccc-ccChhhccccccc
Confidence 67778888888888876431 22345677888999999998884 4557788889999
Q ss_pred CEEECcCCCCcccchh-hhcCCCCCEeeccCccCCCcCC
Q 045458 803 KVLCLSNNSFVSLPAS-ISRLSKLECLNLNGCKKLQSLP 840 (1170)
Q Consensus 803 ~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~~L~~lp 840 (1170)
+.|+|++|+++.+|.. +..+++|+.|+|++|+.....|
T Consensus 374 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 374 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9999999999888754 5788999999999887655444
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=7.2e-28 Score=286.36 Aligned_cols=384 Identities=20% Similarity=0.222 Sum_probs=225.7
Q ss_pred CceEEEcCCCCCCCCCCCC-CCCceeEEEccCCChH-HHhhcCCCCCCC-------------cEEEcCCCCCCCcCCCCC
Q 045458 425 KLRLLDWPGYPLKSLPPNL-QLDKTIEFKMLCSRIE-ELWKGIKSLNML-------------KVMKVSYSQSLIKIPDFT 489 (1170)
Q Consensus 425 ~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~s~i~-~L~~~l~~l~~L-------------~~L~Ls~~~~l~~~~~~~ 489 (1170)
.|++|+++++.+..+|..+ .+.+|++|+++++.+. .+|.++..+.+| +.|+++++. +..+|.+
T Consensus 12 ~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~~- 89 (454)
T 1jl5_A 12 FLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPEL- 89 (454)
T ss_dssp ----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCSC-
T ss_pred cchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCCCC-
Confidence 5788888888888888877 8888888888888877 577888877764 888888886 5556653
Q ss_pred CCCCccEEEeeccCCcccccccccCCCCccEEEeeCCCCCCccCccccCCcccEEEecCCCCCCccccccCCCCCCcEEE
Q 045458 490 GVPNLEKLYLEGCTRLREIHPSLLLHSKLVILNLTGCTSLATLPGKIFMKSVKKLVLSGCSKLKKFPKIVGNMECLSKLL 569 (1170)
Q Consensus 490 ~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~ 569 (1170)
.++|++|++++|. +..+|.. +++|+.|++++| .+..++.. .++|++|++++|.... +| .++++++|++|+
T Consensus 90 -~~~L~~L~l~~n~-l~~lp~~---~~~L~~L~l~~n-~l~~l~~~--~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~ 159 (454)
T 1jl5_A 90 -PPHLESLVASCNS-LTELPEL---PQSLKSLLVDNN-NLKALSDL--PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIID 159 (454)
T ss_dssp -CTTCSEEECCSSC-CSSCCCC---CTTCCEEECCSS-CCSCCCSC--CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred -cCCCCEEEccCCc-CCccccc---cCCCcEEECCCC-ccCcccCC--CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEE
Confidence 4788888888864 4446643 478888888885 34444432 3688888888886554 77 488888888888
Q ss_pred ecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCCcc
Q 045458 570 LDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSITEV 649 (1170)
Q Consensus 570 L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~l 649 (1170)
+++|.+..+|..+ .+|++|++++|... .+| .++.+++|+.|++++|.... +|.. .++|+.|++++|.+..+
T Consensus 160 l~~N~l~~lp~~~---~~L~~L~L~~n~l~-~l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~~l 230 (454)
T 1jl5_A 160 VDNNSLKKLPDLP---PSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILEEL 230 (454)
T ss_dssp CCSSCCSCCCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSSC
T ss_pred CCCCcCcccCCCc---ccccEEECcCCcCC-cCc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCCcc
Confidence 8888888877543 58888888888644 466 58888888888888876543 4432 25888888888888888
Q ss_pred CccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCCCccccCCCC
Q 045458 650 PSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQPPSGIFHMKN 729 (1170)
Q Consensus 650 p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~ 729 (1170)
|. ++.+++|+.|++++|... .+|.. +++|+.|++++|.. ..+|.. +++|+.|++++|.++.+|.. .++
T Consensus 231 p~-~~~l~~L~~L~l~~N~l~-~l~~~---~~~L~~L~l~~N~l-~~l~~~---~~~L~~L~ls~N~l~~l~~~---~~~ 298 (454)
T 1jl5_A 231 PE-LQNLPFLTTIYADNNLLK-TLPDL---PPSLEALNVRDNYL-TDLPEL---PQSLTFLDVSENIFSGLSEL---PPN 298 (454)
T ss_dssp CC-CTTCTTCCEEECCSSCCS-SCCSC---CTTCCEEECCSSCC-SCCCCC---CTTCCEEECCSSCCSEESCC---CTT
T ss_pred cc-cCCCCCCCEEECCCCcCC-ccccc---ccccCEEECCCCcc-cccCcc---cCcCCEEECcCCccCcccCc---CCc
Confidence 84 788888888888887644 35542 47888888888854 345543 37888888888888765532 367
Q ss_pred CcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcC
Q 045458 730 LKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSN 809 (1170)
Q Consensus 730 L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~ 809 (1170)
|++|++++|....... + ...+..+.++.+.+.. +|.. +++|+.|++++|.+.. +|. .+++|+.|++++
T Consensus 299 L~~L~l~~N~l~~i~~-~--~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~--lp~---~l~~L~~L~L~~ 366 (454)
T 1jl5_A 299 LYYLNASSNEIRSLCD-L--PPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE--VPE---LPQNLKQLHVEY 366 (454)
T ss_dssp CCEEECCSSCCSEECC-C--CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC--CCC---CCTTCCEEECCS
T ss_pred CCEEECcCCcCCcccC-C--cCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc--ccc---hhhhccEEECCC
Confidence 8888888877542110 0 0123334444444332 3332 4566777777766642 444 356677777777
Q ss_pred CCCcc---cchhhhcC-------------CCCCEeeccCccCCCcCCCCCcccceeeccCC
Q 045458 810 NSFVS---LPASISRL-------------SKLECLNLNGCKKLQSLPPLPARMRIASVNGC 854 (1170)
Q Consensus 810 n~l~~---lp~~i~~l-------------~~L~~L~L~~c~~L~~lp~lp~sL~~L~i~~C 854 (1170)
|+++. +|.++..+ ++|+.|++++|+ ++.+|.+|++++.|.+.+|
T Consensus 367 N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~-l~~~~~iP~sl~~L~~~~~ 426 (454)
T 1jl5_A 367 NPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP-LREFPDIPESVEDLRMNSE 426 (454)
T ss_dssp SCCSSCCCCCTTCCEEECCC-----------------------------------------
T ss_pred CCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc-CCccccchhhHhheeCcCc
Confidence 66665 34444444 445555555432 3333444444444444443
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=2.9e-27 Score=283.74 Aligned_cols=342 Identities=20% Similarity=0.294 Sum_probs=213.5
Q ss_pred CceEEEcCCCCCCCCCCCCCCCceeEEEccCCChHHHhhcCCCCCCCcEEEcCCCCCCCcCCCCCCCCCccEEEeeccCC
Q 045458 425 KLRLLDWPGYPLKSLPPNLQLDKTIEFKMLCSRIEELWKGIKSLNMLKVMKVSYSQSLIKIPDFTGVPNLEKLYLEGCTR 504 (1170)
Q Consensus 425 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~s~i~~L~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~ 504 (1170)
+|+.|++.++.++.+|....+.+|++|+++++.+..++. +..+++|++|++++|.... ++.+.++++|++|++++|.
T Consensus 47 ~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~- 123 (466)
T 1o6v_A 47 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIAD-ITPLANLTNLTGLTLFNNQ- 123 (466)
T ss_dssp TCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSC-
T ss_pred cccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCcccc-ChhhcCCCCCCEEECCCCC-
Confidence 466666666666666653366667777777766666655 6667777777777665433 3336667777777776653
Q ss_pred cccccccccCCCCccEEEeeCCCCCCccCccccCCcccEEEecCCCCCCccccccCCCCCCcEEEecCccCCccCcchhc
Q 045458 505 LREIHPSLLLHSKLVILNLTGCTSLATLPGKIFMKSVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTAIGELPLSIEL 584 (1170)
Q Consensus 505 l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~ 584 (1170)
+..+++ +..+++|++|++++|. +..++....+++|+.|+++++ ...++ .++++++|++|++++|.+..++ .+..
T Consensus 124 l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~--~~~~~-~~~~l~~L~~L~l~~n~l~~~~-~l~~ 197 (466)
T 1o6v_A 124 ITDIDP-LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQ--VTDLK-PLANLTTLERLDISSNKVSDIS-VLAK 197 (466)
T ss_dssp CCCCGG-GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEES--CCCCG-GGTTCTTCCEEECCSSCCCCCG-GGGG
T ss_pred CCCChH-HcCCCCCCEEECCCCc-cCCChhhccCCcccEeecCCc--ccCch-hhccCCCCCEEECcCCcCCCCh-hhcc
Confidence 333333 6666666666666643 333333223556666665432 11122 2555566666666666555543 2445
Q ss_pred CCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCCccCccccCCCCCCEEec
Q 045458 585 LSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSITEVPSSIELLTGLNVLNL 664 (1170)
Q Consensus 585 l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L 664 (1170)
+++|+.|++++|... ...| +..+++|+.|++++|.+..++ .+..+++|+.|++
T Consensus 198 l~~L~~L~l~~n~l~------------------------~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l 250 (466)
T 1o6v_A 198 LTNLESLIATNNQIS------------------------DITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDL 250 (466)
T ss_dssp CTTCSEEECCSSCCC------------------------CCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEEC
T ss_pred CCCCCEEEecCCccc------------------------cccc--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEEC
Confidence 555555555554432 2222 333445555555555555443 3556666666666
Q ss_pred cCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCCCccccCCCCCcEEEecCCCCCCCC
Q 045458 665 NDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQPPSGIFHMKNLKALYFRGCKGSPSS 744 (1170)
Q Consensus 665 ~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~~~~~ 744 (1170)
++|......+ +..+++|+.|++++|.... ++. +..+++|+.|++++|.++.++. +..+++|+.|++++|....
T Consensus 251 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~-- 323 (466)
T 1o6v_A 251 ANNQISNLAP--LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISD-- 323 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSC--
T ss_pred CCCccccchh--hhcCCCCCEEECCCCccCc-ccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCC--
Confidence 6665443333 5667777777777774443 333 6677888888888888877665 6778888888888886432
Q ss_pred CCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCcccchhhhcCCC
Q 045458 745 TSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVSLPASISRLSK 824 (1170)
Q Consensus 745 ~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~ 824 (1170)
.++ +..+++|+.|++++|.+.. + ..+..+++|+.|++++|.++.++. +..+++
T Consensus 324 ----------------------~~~-~~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~ 376 (466)
T 1o6v_A 324 ----------------------ISP-VSSLTKLQRLFFYNNKVSD--V-SSLANLTNINWLSAGHNQISDLTP-LANLTR 376 (466)
T ss_dssp ----------------------CGG-GGGCTTCCEEECCSSCCCC--C-GGGTTCTTCCEEECCSSCCCBCGG-GTTCTT
T ss_pred ----------------------chh-hccCccCCEeECCCCccCC--c-hhhccCCCCCEEeCCCCccCccch-hhcCCC
Confidence 111 4567889999999998854 3 468889999999999999987775 889999
Q ss_pred CCEeeccCccCC
Q 045458 825 LECLNLNGCKKL 836 (1170)
Q Consensus 825 L~~L~L~~c~~L 836 (1170)
|+.|++++|+..
T Consensus 377 L~~L~l~~n~~~ 388 (466)
T 1o6v_A 377 ITQLGLNDQAWT 388 (466)
T ss_dssp CCEEECCCEEEE
T ss_pred CCEEeccCCccc
Confidence 999999998643
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=5.4e-27 Score=288.55 Aligned_cols=413 Identities=18% Similarity=0.149 Sum_probs=297.9
Q ss_pred CceEEEcCCCCCCCCCCCCCCCceeEEEccCCChHHHh-hcCCCCCCCcEEEcCCCCCCCcCCC-CCCCCCccEEEeecc
Q 045458 425 KLRLLDWPGYPLKSLPPNLQLDKTIEFKMLCSRIEELW-KGIKSLNMLKVMKVSYSQSLIKIPD-FTGVPNLEKLYLEGC 502 (1170)
Q Consensus 425 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~s~i~~L~-~~l~~l~~L~~L~Ls~~~~l~~~~~-~~~l~~L~~L~L~~~ 502 (1170)
..++++++++.++.+|..+. .+|++|++++|.+..++ ..+..+++|++|++++|......|+ |.++++|++|++++|
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CCcEEEcCCCCCccCCCCCC-CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 45899999999999998774 89999999999999886 6899999999999999986655554 899999999999997
Q ss_pred CCcccccccccCCCCccEEEeeCCCCCC-ccCcccc-CCcccEEEecCCCCCCccccccCCCCCC--cEEEecCccC---
Q 045458 503 TRLREIHPSLLLHSKLVILNLTGCTSLA-TLPGKIF-MKSVKKLVLSGCSKLKKFPKIVGNMECL--SKLLLDGTAI--- 575 (1170)
Q Consensus 503 ~~l~~~~~~i~~l~~L~~L~L~~c~~l~-~lp~~~~-l~~L~~L~L~~~~~~~~l~~~l~~l~~L--~~L~L~~~~i--- 575 (1170)
. +..+|.. .+++|++|++++|.... ..|..+. +++|++|++++|..... .+..+.+| ++|++++|.+
T Consensus 111 ~-l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 111 R-LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp C-CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCC
T ss_pred c-CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccc
Confidence 5 5678877 89999999999976443 2334555 99999999999876543 34555555 9999999987
Q ss_pred CccCcchhcCC-CCCEEeccCCCCCCcCcc-ccCCCCcccEEEeeCCC----------------------------CCC-
Q 045458 576 GELPLSIELLS-KLVSLDLNNCKNFKNLPV-TISSLKCLRSLVLSGCS----------------------------KLK- 624 (1170)
Q Consensus 576 ~~l~~~i~~l~-~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~L~~~~----------------------------~~~- 624 (1170)
...|..+..+. ..-.+++++|.....++. .+..+++|+.|++++|. ...
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~ 264 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH
Confidence 33455554443 111334455544433322 34455566666666542 111
Q ss_pred ---CcchhhcCCcccCeEeccCcCCC-ccCccc-----cCCCCCCEEeccCCcCCcccc-ccCC---CCCCCCEEEeeCc
Q 045458 625 ---KFPEIVESMEDLSELFLDGTSIT-EVPSSI-----ELLTGLNVLNLNDCKNLVRIP-DSIN---GLKSLQSLNLSGC 691 (1170)
Q Consensus 625 ---~~p~~~~~l~~L~~L~l~~~~l~-~lp~~i-----~~l~~L~~L~L~~~~~l~~lp-~~l~---~l~~L~~L~L~~c 691 (1170)
.++... ...+|+.|++++|.+. .+|..+ ..++.|+.+++..+.. .+| ..+. ...+|+.|++++|
T Consensus 265 ~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n 341 (562)
T 3a79_B 265 CSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDT 341 (562)
T ss_dssp HHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESS
T ss_pred HHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCC
Confidence 111111 2348999999999988 788877 5666666666666554 344 2221 1267999999999
Q ss_pred CCCCCCccccCCCCCCcEEEccCccCCC-CCccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCC
Q 045458 692 FKLENVPETLGQVESLEELHISGTAIRQ-PPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPS 770 (1170)
Q Consensus 692 ~~l~~l~~~l~~l~~L~~L~L~~~~i~~-lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~ 770 (1170)
...... ....+++|++|++++|.++. .|..+..+++|++|++++|+.... ..+|..
T Consensus 342 ~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------------~~~~~~ 398 (562)
T 3a79_B 342 PFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF---------------------FKVALM 398 (562)
T ss_dssp CCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBT---------------------THHHHT
T ss_pred Cccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCc---------------------ccchhh
Confidence 754322 12578999999999999997 678899999999999999875420 123445
Q ss_pred CCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCc-ccchhhhcCCCCCEeeccCccCCCcCCC---CCccc
Q 045458 771 LSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFV-SLPASISRLSKLECLNLNGCKKLQSLPP---LPARM 846 (1170)
Q Consensus 771 l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~---lp~sL 846 (1170)
+..+++|+.|++++|.+.....+..+..+++|+.|++++|.++ .+|..+. ++|+.|++++| .++.+|. -.++|
T Consensus 399 ~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~~~~~l~~L 475 (562)
T 3a79_B 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSIPKDVTHLQAL 475 (562)
T ss_dssp TTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCCCTTTTSSCCC
T ss_pred hcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcccChhhcCCCCC
Confidence 7889999999999999854344445888999999999999997 3444332 69999999998 5778876 23589
Q ss_pred ceeeccCCcCCcccCCc--cccccccccee
Q 045458 847 RIASVNGCASLETLSDP--LELNKLKDFEI 874 (1170)
Q Consensus 847 ~~L~i~~C~~L~~l~~~--~~~~~L~~l~i 874 (1170)
+.|+++++ .++.++.. ..+++|+.+++
T Consensus 476 ~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l 504 (562)
T 3a79_B 476 QELNVASN-QLKSVPDGVFDRLTSLQYIWL 504 (562)
T ss_dssp SEEECCSS-CCCCCCTTSTTTCTTCCCEEC
T ss_pred CEEECCCC-CCCCCCHHHHhcCCCCCEEEe
Confidence 99999987 57777753 33455555443
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=5.3e-27 Score=281.10 Aligned_cols=355 Identities=17% Similarity=0.153 Sum_probs=275.9
Q ss_pred ccCCceEEEcCCCCCCCC-CCCC-CCCceeEEEccCCChH-HH-hhcCCCCCCCcEEEcCCCCCCCcCC-CCCCCCCccE
Q 045458 422 LSNKLRLLDWPGYPLKSL-PPNL-QLDKTIEFKMLCSRIE-EL-WKGIKSLNMLKVMKVSYSQSLIKIP-DFTGVPNLEK 496 (1170)
Q Consensus 422 l~~~Lr~L~l~~~~l~~l-p~~~-~l~~L~~L~L~~s~i~-~L-~~~l~~l~~L~~L~Ls~~~~l~~~~-~~~~l~~L~~ 496 (1170)
+|.+|++|+++++.++.+ |..+ .+.+|++|+++++.+. .+ +..+..+++|++|++++|......| .|.++++|++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 667899999999999988 4556 8999999999999886 44 5678999999999999998766655 4899999999
Q ss_pred EEeeccCCccccccc--ccCCCCccEEEeeCCCCCCccCcc-cc-CCcccEEEecCCCCCCccccccCCC--CCCcEEEe
Q 045458 497 LYLEGCTRLREIHPS--LLLHSKLVILNLTGCTSLATLPGK-IF-MKSVKKLVLSGCSKLKKFPKIVGNM--ECLSKLLL 570 (1170)
Q Consensus 497 L~L~~~~~l~~~~~~--i~~l~~L~~L~L~~c~~l~~lp~~-~~-l~~L~~L~L~~~~~~~~l~~~l~~l--~~L~~L~L 570 (1170)
|++++|......+.. +..+++|++|++++|......|.. +. +++|++|++++|......+..+..+ .+|+.|++
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 999998665545554 889999999999998766655664 33 9999999999998887778777766 78999999
Q ss_pred cCccCCccCcc---------hhcCCCCCEEeccCCCCCCcCccccCC---CCcccEEEeeCCCCCCCcchhhcCCcccCe
Q 045458 571 DGTAIGELPLS---------IELLSKLVSLDLNNCKNFKNLPVTISS---LKCLRSLVLSGCSKLKKFPEIVESMEDLSE 638 (1170)
Q Consensus 571 ~~~~i~~l~~~---------i~~l~~L~~L~L~~~~~l~~lp~~l~~---l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~ 638 (1170)
+++.+..++.. +..+++|+.|++++|......|..+.. .++|+.|++++|.......
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----------- 256 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF----------- 256 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT-----------
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc-----------
Confidence 99999877643 346689999999999877766655433 4889999999986544311
Q ss_pred EeccCcCCCcc-Cccc--cCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCc
Q 045458 639 LFLDGTSITEV-PSSI--ELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGT 715 (1170)
Q Consensus 639 L~l~~~~l~~l-p~~i--~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~ 715 (1170)
..+.+... +..+ ...++|+.|++++|......|..+..+++|+.|++++|......|..+..+++|+.|++++|
T Consensus 257 ---~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 257 ---GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333 (455)
T ss_dssp ---TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ---chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC
Confidence 11111111 0111 12467888888888777777777888888888888888766666777888888888888888
Q ss_pred cCCCC-CccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcC
Q 045458 716 AIRQP-PSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPN 794 (1170)
Q Consensus 716 ~i~~l-p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~ 794 (1170)
.++.+ |..+..+++|++|++++|.... ..|..+..+++|+.|+|++|++. +..+.
T Consensus 334 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----------------------~~~~~~~~l~~L~~L~L~~N~l~-~~~~~ 389 (455)
T 3v47_A 334 FLGSIDSRMFENLDKLEVLDLSYNHIRA-----------------------LGDQSFLGLPNLKELALDTNQLK-SVPDG 389 (455)
T ss_dssp CCCEECGGGGTTCTTCCEEECCSSCCCE-----------------------ECTTTTTTCTTCCEEECCSSCCS-CCCTT
T ss_pred ccCCcChhHhcCcccCCEEECCCCcccc-----------------------cChhhccccccccEEECCCCccc-cCCHh
Confidence 88766 4567788889999988886432 34556788899999999999985 34445
Q ss_pred ccCCCCCCCEEECcCCCCcc
Q 045458 795 DIGNLRSLKVLCLSNNSFVS 814 (1170)
Q Consensus 795 ~l~~l~sL~~L~Ls~n~l~~ 814 (1170)
.+..+++|+.|++++|.++.
T Consensus 390 ~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 390 IFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp TTTTCTTCCEEECCSSCBCC
T ss_pred HhccCCcccEEEccCCCccc
Confidence 67899999999999999874
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=1.5e-26 Score=277.52 Aligned_cols=340 Identities=20% Similarity=0.294 Sum_probs=243.4
Q ss_pred CCCcEEEcCCCCCCCcCCCCCCCCCccEEEeeccCCcccccccccCCCCccEEEeeCCCCCCccCccccCCcccEEEecC
Q 045458 469 NMLKVMKVSYSQSLIKIPDFTGVPNLEKLYLEGCTRLREIHPSLLLHSKLVILNLTGCTSLATLPGKIFMKSVKKLVLSG 548 (1170)
Q Consensus 469 ~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~ 548 (1170)
++|+.|+++++. +..+|.+..+++|++|++++|. +..+++ +..+++|++|++++|.. ..++....+++|++|++++
T Consensus 46 ~~l~~L~l~~~~-i~~l~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 46 DQVTTLQADRLG-IKSIDGVEYLNNLTQINFSNNQ-LTDITP-LKNLTKLVDILMNNNQI-ADITPLANLTNLTGLTLFN 121 (466)
T ss_dssp HTCCEEECCSSC-CCCCTTGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCS
T ss_pred ccccEEecCCCC-CccCcchhhhcCCCEEECCCCc-cCCchh-hhccccCCEEECCCCcc-ccChhhcCCCCCCEEECCC
Confidence 344444444443 2334444445555555555442 233333 45555555555555432 2233222256666666666
Q ss_pred CCCCCccccccCCCCCCcEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcch
Q 045458 549 CSKLKKFPKIVGNMECLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPE 628 (1170)
Q Consensus 549 ~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~ 628 (1170)
|.... ++. +.++++|++|++++|.+..++ .+..+++|+.|++.++ ...++ .+..+++|+.|++++|.... + .
T Consensus 122 n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~~--~~~~~-~~~~l~~L~~L~l~~n~l~~-~-~ 193 (466)
T 1o6v_A 122 NQITD-IDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQ--VTDLK-PLANLTTLERLDISSNKVSD-I-S 193 (466)
T ss_dssp SCCCC-CGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEES--CCCCG-GGTTCTTCCEEECCSSCCCC-C-G
T ss_pred CCCCC-ChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCCc--ccCch-hhccCCCCCEEECcCCcCCC-C-h
Confidence 54333 332 677788888888888877776 4778888888888642 33333 37888999999999887543 3 3
Q ss_pred hhcCCcccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCc
Q 045458 629 IVESMEDLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLE 708 (1170)
Q Consensus 629 ~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~ 708 (1170)
.+..+++|+.|++++|.+..++. ++.+++|+.|++++|.... ++ .+..+++|+.|++++|......+ +..+++|+
T Consensus 194 ~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 268 (466)
T 1o6v_A 194 VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD-IG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLT 268 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCS
T ss_pred hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCccc-ch-hhhcCCCCCEEECCCCccccchh--hhcCCCCC
Confidence 47889999999999999998765 7889999999999987544 33 57789999999999997654433 88899999
Q ss_pred EEEccCccCCCCCccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCC
Q 045458 709 ELHISGTAIRQPPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLG 788 (1170)
Q Consensus 709 ~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~ 788 (1170)
.|++++|.++.++. +..+++|+.|++++|+... +++ +..+++|+.|++++|++.
T Consensus 269 ~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~------------------------~~~-~~~l~~L~~L~L~~n~l~ 322 (466)
T 1o6v_A 269 ELKLGANQISNISP-LAGLTALTNLELNENQLED------------------------ISP-ISNLKNLTYLTLYFNNIS 322 (466)
T ss_dssp EEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSC------------------------CGG-GGGCTTCSEEECCSSCCS
T ss_pred EEECCCCccCcccc-ccCCCccCeEEcCCCcccC------------------------chh-hcCCCCCCEEECcCCcCC
Confidence 99999999998877 8899999999999987542 111 567889999999999986
Q ss_pred CCCCcCccCCCCCCCEEECcCCCCcccchhhhcCCCCCEeeccCccCCCcCC-CCCcccceeeccCCc
Q 045458 789 EGFIPNDIGNLRSLKVLCLSNNSFVSLPASISRLSKLECLNLNGCKKLQSLP-PLPARMRIASVNGCA 855 (1170)
Q Consensus 789 ~~~~~~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp-~lp~sL~~L~i~~C~ 855 (1170)
. ..| +..+++|+.|++++|.++.++ .+..+++|+.|++++|+.....| .-.++|+.|++.+|+
T Consensus 323 ~-~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 323 D-ISP--VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 386 (466)
T ss_dssp C-CGG--GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEE
T ss_pred C-chh--hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCc
Confidence 4 333 789999999999999999885 78899999999999987654444 123578899998875
No 32
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=2.2e-26 Score=288.11 Aligned_cols=199 Identities=24% Similarity=0.262 Sum_probs=115.5
Q ss_pred CCCCCCEEeccCCcCCc--cccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCC--CccccCCCCC
Q 045458 655 LLTGLNVLNLNDCKNLV--RIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQP--PSGIFHMKNL 730 (1170)
Q Consensus 655 ~l~~L~~L~L~~~~~l~--~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~l--p~~l~~l~~L 730 (1170)
.+++|+.|++++|.... ..+..+..+.+|+.|++..+... ..+..+..+++|+.+++..+..... +..+..+++|
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhcccccccccccccccccc
Confidence 45566666666554322 12333334555555555554322 2233344455555555555443322 1233445555
Q ss_pred cEEEecCCCCCCCC-CCcccCcccccccccCCCC-cccCCCCCCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECc
Q 045458 731 KALYFRGCKGSPSS-TSWSRHFPFNLIKRSLDPV-AFSFPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLS 808 (1170)
Q Consensus 731 ~~L~L~~c~~~~~~-~~~~~~~~l~~~~~~~~~~-~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls 808 (1170)
+.++++.|...... ..+.....+..+.++.+.. ....|..+..+++|+.|+|++|++. +..|..+.++++|+.|+|+
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~-~l~~~~f~~l~~L~~L~Ls 526 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMS 526 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECT
T ss_pred ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccC-CcChHHHcCCCCCCEEECC
Confidence 55555555432211 1112222233333333332 2235667888899999999999884 5667788899999999999
Q ss_pred CCCCcccc-hhhhcCCCCCEeeccCccCCCcCCC----CCcccceeeccCCc
Q 045458 809 NNSFVSLP-ASISRLSKLECLNLNGCKKLQSLPP----LPARMRIASVNGCA 855 (1170)
Q Consensus 809 ~n~l~~lp-~~i~~l~~L~~L~L~~c~~L~~lp~----lp~sL~~L~i~~C~ 855 (1170)
+|+++.++ ..+..+++|+.|+|++|+.....|. +|++|+.|+++++|
T Consensus 527 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 527 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 99998876 4578899999999998765444343 45677777777653
No 33
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=3.5e-26 Score=271.81 Aligned_cols=377 Identities=20% Similarity=0.201 Sum_probs=260.9
Q ss_pred hhhhccCCCccEEeecCcc----cCCchhccc------------CCceEEEcCCCCCCCCCCCCCCCceeEEEccCCChH
Q 045458 396 AKAFSKMTNLRLLGICNLK----LPEGLECLS------------NKLRLLDWPGYPLKSLPPNLQLDKTIEFKMLCSRIE 459 (1170)
Q Consensus 396 ~~~f~~~~~Lr~L~l~~~~----l~~~~~~l~------------~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~s~i~ 459 (1170)
+..+.++++|++|+++++. +|..+..+. .++++|+++++.++.+|.. +.+|++|++++|.+.
T Consensus 27 P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~--~~~L~~L~l~~n~l~ 104 (454)
T 1jl5_A 27 PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL--PPHLESLVASCNSLT 104 (454)
T ss_dssp -------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCS
T ss_pred ChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC--cCCCCEEEccCCcCC
Confidence 4568999999999998875 455444433 2469999999999999984 589999999999999
Q ss_pred HHhhcCCCCCCCcEEEcCCCCCCCcCCCCCCCCCccEEEeeccCCcccccccccCCCCccEEEeeCCCCCCccCccccCC
Q 045458 460 ELWKGIKSLNMLKVMKVSYSQSLIKIPDFTGVPNLEKLYLEGCTRLREIHPSLLLHSKLVILNLTGCTSLATLPGKIFMK 539 (1170)
Q Consensus 460 ~L~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~ 539 (1170)
.+|.. +.+|+.|++++|. +..+|.+. ++|++|++++|. +..+| ++..+++|++|++++|. +..+|.. ..
T Consensus 105 ~lp~~---~~~L~~L~l~~n~-l~~l~~~~--~~L~~L~L~~n~-l~~lp-~~~~l~~L~~L~l~~N~-l~~lp~~--~~ 173 (454)
T 1jl5_A 105 ELPEL---PQSLKSLLVDNNN-LKALSDLP--PLLEYLGVSNNQ-LEKLP-ELQNSSFLKIIDVDNNS-LKKLPDL--PP 173 (454)
T ss_dssp SCCCC---CTTCCEEECCSSC-CSCCCSCC--TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSC-CSCCCCC--CT
T ss_pred ccccc---cCCCcEEECCCCc-cCcccCCC--CCCCEEECcCCC-CCCCc-ccCCCCCCCEEECCCCc-CcccCCC--cc
Confidence 88754 4899999999986 44454432 799999999985 45577 69999999999999975 5556654 46
Q ss_pred cccEEEecCCCCCCccccccCCCCCCcEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeC
Q 045458 540 SVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSG 619 (1170)
Q Consensus 540 ~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~ 619 (1170)
+|++|++++|.... +| .++++++|++|++++|.+..+|... ++|+.|++++|... .+| .+..+++|+.|++++
T Consensus 174 ~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~ 246 (454)
T 1jl5_A 174 SLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADN 246 (454)
T ss_dssp TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCS
T ss_pred cccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCC
Confidence 99999999996544 66 5899999999999999998887643 69999999999654 788 588999999999999
Q ss_pred CCCCCCcchhhcCCcccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCcc
Q 045458 620 CSKLKKFPEIVESMEDLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPE 699 (1170)
Q Consensus 620 ~~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~ 699 (1170)
|... .+|. .+++|+.|++++|.+..+|.. +++|+.|++++|.... +|.. .++|+.|++++|.... ++.
T Consensus 247 N~l~-~l~~---~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~~ 314 (454)
T 1jl5_A 247 NLLK-TLPD---LPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRS-LCD 314 (454)
T ss_dssp SCCS-SCCS---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-ECC
T ss_pred CcCC-cccc---cccccCEEECCCCcccccCcc---cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCc-ccC
Confidence 8654 3554 347999999999999998864 4899999999987543 3321 3689999999985442 321
Q ss_pred ccCCCCCCcEEEccCccCCCCCccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCE
Q 045458 700 TLGQVESLEELHISGTAIRQPPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTK 779 (1170)
Q Consensus 700 ~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~ 779 (1170)
-.++|+.|++++|.++.+|.. +++|++|++++|.... +|. .+++|+.
T Consensus 315 ---~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~~------------------------lp~---~l~~L~~ 361 (454)
T 1jl5_A 315 ---LPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAE------------------------VPE---LPQNLKQ 361 (454)
T ss_dssp ---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC------------------------CCC---CCTTCCE
T ss_pred ---CcCcCCEEECCCCcccccccc---CCcCCEEECCCCcccc------------------------ccc---hhhhccE
Confidence 125899999999999988865 5899999999987432 333 3578999
Q ss_pred EeccCCCCCCC-CCcCccCCC-------------CCCCEEECcCCCCcccchhhhcCCCCCEeeccCccCCCcCC
Q 045458 780 LDLSDCDLGEG-FIPNDIGNL-------------RSLKVLCLSNNSFVSLPASISRLSKLECLNLNGCKKLQSLP 840 (1170)
Q Consensus 780 L~Ls~c~l~~~-~~~~~l~~l-------------~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 840 (1170)
|++++|++..- .+|..+..+ ++|+.|++++|+++.+|.. -+.|+.|.+.+|..-..+|
T Consensus 362 L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~i---P~sl~~L~~~~~~~~~~~~ 433 (454)
T 1jl5_A 362 LHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDI---PESVEDLRMNSERVVDPYE 433 (454)
T ss_dssp EECCSSCCSSCCCCCTTCCEEECCC--------------------------------------------------
T ss_pred EECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccc---hhhHhheeCcCcccCCccc
Confidence 99999988531 467777776 8999999999999864421 1346777788876555444
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=1.7e-25 Score=257.65 Aligned_cols=301 Identities=20% Similarity=0.239 Sum_probs=195.1
Q ss_pred CceEEEcCCCCCCCCCCCCCCCceeEEEccCCChHHHhhcCCCCCCCcEEEcCCCCCCCcCCCCCCCCCccEEEeeccCC
Q 045458 425 KLRLLDWPGYPLKSLPPNLQLDKTIEFKMLCSRIEELWKGIKSLNMLKVMKVSYSQSLIKIPDFTGVPNLEKLYLEGCTR 504 (1170)
Q Consensus 425 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~s~i~~L~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~ 504 (1170)
+|++|+++++.+..+|....+++|++|+++++.+..++. +..+++|++|++++|. +..++.+..+++|++|++++|.
T Consensus 45 ~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~L~l~~n~- 121 (347)
T 4fmz_A 45 SITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDISALQNLTNLRELYLNEDN- 121 (347)
T ss_dssp TCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEECTTSC-
T ss_pred cccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCchHHcCCCcCCEEECcCCc-
Confidence 355555555555555543355566666666666655554 5666666666666664 3345556666666666666653
Q ss_pred cccccccccCCCCccEEEeeCCCCCCccCccccCCcccEEEecCCCCCCccccccCCCCCCcEEEecCccCCccCcchhc
Q 045458 505 LREIHPSLLLHSKLVILNLTGCTSLATLPGKIFMKSVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTAIGELPLSIEL 584 (1170)
Q Consensus 505 l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~ 584 (1170)
+..++. +..+++|+.|++++|.....++....+++|++|++++|......+ +..+++|++|++++|.+..++. +..
T Consensus 122 i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~ 197 (347)
T 4fmz_A 122 ISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-LAS 197 (347)
T ss_dssp CCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG-GGG
T ss_pred ccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc-ccC
Confidence 333333 566666666666666655555553346667777776665433222 5666777777777777766665 667
Q ss_pred CCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCCccCccccCCCCCCEEec
Q 045458 585 LSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSITEVPSSIELLTGLNVLNL 664 (1170)
Q Consensus 585 l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L 664 (1170)
+++|+.|++++|......+ +..+++|+.|++++|......+ +..+++|+.|++++|.+..+ ..+..+++|+.|++
T Consensus 198 l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l 272 (347)
T 4fmz_A 198 LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNV 272 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEEC
T ss_pred CCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEc
Confidence 7777777777765443322 6667777777777776544333 66777777777777777776 35677778888888
Q ss_pred cCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCCCccccCCCCCcEEEecCCCC
Q 045458 665 NDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQPPSGIFHMKNLKALYFRGCKG 740 (1170)
Q Consensus 665 ~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~ 740 (1170)
++|.... ++ .+..+++|+.|++++|......+..+..+++|+.|++++|.++.++. +..+++|++|++++|..
T Consensus 273 ~~n~l~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 273 GSNQISD-IS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp CSSCCCC-CG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred cCCccCC-Ch-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhcc
Confidence 8775433 33 46677888888888887666666777778888888888888887766 77788888888888763
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=2.7e-25 Score=264.45 Aligned_cols=219 Identities=17% Similarity=0.113 Sum_probs=109.9
Q ss_pred ceEEEcCCCCCCCCCCCCCCCceeEEEccCCChHHHhhcCCCCCCCcEEEcCCCCCCCcCCCCCCCCCccEEEeeccCCc
Q 045458 426 LRLLDWPGYPLKSLPPNLQLDKTIEFKMLCSRIEELWKGIKSLNMLKVMKVSYSQSLIKIPDFTGVPNLEKLYLEGCTRL 505 (1170)
Q Consensus 426 Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~s~i~~L~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~l 505 (1170)
|++|+++++.++.+|....+.+|++|++++|.+..+| +..+++|++|++++|.. ..++ ++.+++|++|++++|. +
T Consensus 44 L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l-~~~~-~~~l~~L~~L~L~~N~-l 118 (457)
T 3bz5_A 44 LTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKL-TNLD-VTPLTKLTYLNCDTNK-L 118 (457)
T ss_dssp CCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCC-SCCC-CTTCTTCCEEECCSSC-C
T ss_pred CCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCC-ceee-cCCCCcCCEEECCCCc-C
Confidence 4444444444444442224445555555555544443 44555555555555542 2222 4555555555555542 2
Q ss_pred ccccccccCCCCccEEEeeCCCCCCccCccccCCcccEEEecCCCCCCccccccCCCCCCcEEEecCccCCccCcchhcC
Q 045458 506 REIHPSLLLHSKLVILNLTGCTSLATLPGKIFMKSVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTAIGELPLSIELL 585 (1170)
Q Consensus 506 ~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l 585 (1170)
..++ +..+++|+.|++++|. ++.++ ...+++|++|++++|.....+ .++.+++|++|++++|.+..+| +..+
T Consensus 119 ~~l~--~~~l~~L~~L~l~~N~-l~~l~-l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l 190 (457)
T 3bz5_A 119 TKLD--VSQNPLLTYLNCARNT-LTEID-VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQN 190 (457)
T ss_dssp SCCC--CTTCTTCCEEECTTSC-CSCCC-CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTC
T ss_pred Ceec--CCCCCcCCEEECCCCc-cceec-cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccC
Confidence 2232 4455555555555533 22222 112555566666555444444 2455566666666666666655 5556
Q ss_pred CCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCCccCccccCCCCCCEEecc
Q 045458 586 SKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSITEVPSSIELLTGLNVLNLN 665 (1170)
Q Consensus 586 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~ 665 (1170)
++|+.|++++|..... .+..+++|+.|++++|.... +| +..+++|+.|++++|.+..+| ++.+++|+.|+++
T Consensus 191 ~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~ 262 (457)
T 3bz5_A 191 KLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCI 262 (457)
T ss_dssp TTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECT
T ss_pred CCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEecc
Confidence 6666666666543322 25555566666666554433 33 455555666666666655554 3445555555443
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=2.9e-25 Score=255.77 Aligned_cols=303 Identities=22% Similarity=0.315 Sum_probs=206.8
Q ss_pred CCCCCcEEEcCCCCCCCcCCCCCCCCCccEEEeeccCCcccccccccCCCCccEEEeeCCCCCCccCccccCCcccEEEe
Q 045458 467 SLNMLKVMKVSYSQSLIKIPDFTGVPNLEKLYLEGCTRLREIHPSLLLHSKLVILNLTGCTSLATLPGKIFMKSVKKLVL 546 (1170)
Q Consensus 467 ~l~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L 546 (1170)
.+++|+.|+++++. +..++.+..+++|++|++++| .+..++. +.. +++|++|++
T Consensus 42 ~l~~L~~L~l~~~~-i~~~~~~~~~~~L~~L~l~~n-~i~~~~~-~~~-----------------------l~~L~~L~L 95 (347)
T 4fmz_A 42 ELESITKLVVAGEK-VASIQGIEYLTNLEYLNLNGN-QITDISP-LSN-----------------------LVKLTNLYI 95 (347)
T ss_dssp HHTTCSEEECCSSC-CCCCTTGGGCTTCCEEECCSS-CCCCCGG-GTT-----------------------CTTCCEEEC
T ss_pred hcccccEEEEeCCc-cccchhhhhcCCccEEEccCC-ccccchh-hhc-----------------------CCcCCEEEc
Confidence 34556666666554 333445555555555555554 2223322 444 444555555
Q ss_pred cCCCCCCccccccCCCCCCcEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCc
Q 045458 547 SGCSKLKKFPKIVGNMECLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKF 626 (1170)
Q Consensus 547 ~~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~ 626 (1170)
++|... .++ .+.++++|++|++++|.+..++. +..+++|+.|++++|.....++ .+..+++|+.|++++|......
T Consensus 96 ~~n~i~-~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~ 171 (347)
T 4fmz_A 96 GTNKIT-DIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVT 171 (347)
T ss_dssp CSSCCC-CCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCG
T ss_pred cCCccc-Cch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCch
Confidence 554322 222 46677777777777777777765 7778888888888887666665 3778888888888887655443
Q ss_pred chhhcCCcccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCC
Q 045458 627 PEIVESMEDLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVES 706 (1170)
Q Consensus 627 p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~ 706 (1170)
+ +..+++|+.|++++|.+..++. +..+++|+.|++++|......+ +..+++|++|++++|.... ++. +..+++
T Consensus 172 ~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~ 244 (347)
T 4fmz_A 172 P--IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP-LANLSQ 244 (347)
T ss_dssp G--GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTT
T ss_pred h--hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc-hhcCCC
Confidence 3 6778888888888888887766 7778888888888876554333 6677888888888875443 333 777888
Q ss_pred CcEEEccCccCCCCCccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCC
Q 045458 707 LEELHISGTAIRQPPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCD 786 (1170)
Q Consensus 707 L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~ 786 (1170)
|+.|++++|.++.+ ..+..+++|++|++++|.... + +.+..+++|+.|++++|.
T Consensus 245 L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~------------------------~-~~~~~l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 245 LTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISD------------------------I-SVLNNLSQLNSLFLNNNQ 298 (347)
T ss_dssp CCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCC------------------------C-GGGGGCTTCSEEECCSSC
T ss_pred CCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCC------------------------C-hhhcCCCCCCEEECcCCc
Confidence 88888888888776 356778888888888876432 1 125567778888888887
Q ss_pred CCCCCCcCccCCCCCCCEEECcCCCCcccchhhhcCCCCCEeeccCcc
Q 045458 787 LGEGFIPNDIGNLRSLKVLCLSNNSFVSLPASISRLSKLECLNLNGCK 834 (1170)
Q Consensus 787 l~~~~~~~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 834 (1170)
+. +..+..+..+++|+.|++++|.++.++. +..+++|+.|++++|+
T Consensus 299 l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 299 LG-NEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp CC-GGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC-
T ss_pred CC-CcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhc
Confidence 74 4455667778888888888888887765 7788888888888875
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=6.9e-26 Score=269.56 Aligned_cols=354 Identities=18% Similarity=0.177 Sum_probs=281.6
Q ss_pred hhccCCCccEEeecCcccCC--chhcccCCceEEEcCCCCCCCCCCCCCCCceeEEEccCCChHHHhhcCCCCCCCcEEE
Q 045458 398 AFSKMTNLRLLGICNLKLPE--GLECLSNKLRLLDWPGYPLKSLPPNLQLDKTIEFKMLCSRIEELWKGIKSLNMLKVMK 475 (1170)
Q Consensus 398 ~f~~~~~Lr~L~l~~~~l~~--~~~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~s~i~~L~~~l~~l~~L~~L~ 475 (1170)
.+.++++|+.|+++++.+.+ ++..+ .+|++|++++|.++.+| ...+.+|++|++++|.+..++ +..+++|++|+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l-~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMTGIEKL-TGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCTTGGGC-TTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred ChhHcCCCCEEEccCCCcccChhhccc-CCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence 57788999999999988654 44454 47999999999999997 338999999999999999885 88999999999
Q ss_pred cCCCCCCCcCCCCCCCCCccEEEeeccCCcccccccccCCCCccEEEeeCCCCCCccCccccCCcccEEEecCCCCCCcc
Q 045458 476 VSYSQSLIKIPDFTGVPNLEKLYLEGCTRLREIHPSLLLHSKLVILNLTGCTSLATLPGKIFMKSVKKLVLSGCSKLKKF 555 (1170)
Q Consensus 476 Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~~~~l 555 (1170)
+++|.. ..+| ++.+++|++|++++|. +..+ .+..+++|+.|++++|..+..++ ...+++|+.|++++|.... +
T Consensus 113 L~~N~l-~~l~-~~~l~~L~~L~l~~N~-l~~l--~l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls~n~l~~-l 185 (457)
T 3bz5_A 113 CDTNKL-TKLD-VSQNPLLTYLNCARNT-LTEI--DVSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNKITE-L 185 (457)
T ss_dssp CCSSCC-SCCC-CTTCTTCCEEECTTSC-CSCC--CCTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEECCSSCCCC-C
T ss_pred CCCCcC-Ceec-CCCCCcCCEEECCCCc-ccee--ccccCCcCCEEECCCCCcccccc-cccCCcCCEEECCCCccce-e
Confidence 999974 4455 8999999999999975 4444 38899999999999998777773 3349999999999996544 5
Q ss_pred ccccCCCCCCcEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcc
Q 045458 556 PKIVGNMECLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMED 635 (1170)
Q Consensus 556 ~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~ 635 (1170)
| ++.+++|+.|++++|.+..++ +..+++|+.|++++|.... +| +..+++|+.|++++|..... | ...+++
T Consensus 186 ~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~-~--~~~l~~ 255 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL-D--VSTLSK 255 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTT
T ss_pred c--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc-C--HHHCCC
Confidence 5 889999999999999999884 8899999999999997655 66 88999999999999976654 3 456788
Q ss_pred cCeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCc
Q 045458 636 LSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGT 715 (1170)
Q Consensus 636 L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~ 715 (1170)
|+.|+++++ +|+.|++++|...+.+| +..+++|+.|++++|..++.+|. ..++|+.|++++
T Consensus 256 L~~L~l~~n-------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~- 316 (457)
T 3bz5_A 256 LTTLHCIQT-------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQ- 316 (457)
T ss_dssp CCEEECTTC-------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTT-
T ss_pred CCEEeccCC-------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhh-
Confidence 999988765 46667788888777777 46789999999999987777664 234555555443
Q ss_pred cCCCCCccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCc
Q 045458 716 AIRQPPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPND 795 (1170)
Q Consensus 716 ~i~~lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~ 795 (1170)
+++|++|++++|+... + .+..+++|+.|++++|++..
T Consensus 317 -----------~~~L~~L~L~~N~l~~------------------------l--~l~~l~~L~~L~l~~N~l~~------ 353 (457)
T 3bz5_A 317 -----------NPKLVYLYLNNTELTE------------------------L--DVSHNTKLKSLSCVNAHIQD------ 353 (457)
T ss_dssp -----------CTTCCEEECTTCCCSC------------------------C--CCTTCTTCSEEECCSSCCCB------
T ss_pred -----------cccCCEEECCCCcccc------------------------c--ccccCCcCcEEECCCCCCCC------
Confidence 3688888888877432 1 16678889999999988742
Q ss_pred cCCCCCCCEEECcCCCCcccchhhhcCCCCCEeeccCccCCCcCCC
Q 045458 796 IGNLRSLKVLCLSNNSFVSLPASISRLSKLECLNLNGCKKLQSLPP 841 (1170)
Q Consensus 796 l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~ 841 (1170)
+++|..|.+++|.+...+ .+..|..++++++..-..+|.
T Consensus 354 ---l~~L~~L~l~~n~l~g~~----~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 354 ---FSSVGKIPALNNNFEAEG----QTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp ---CTTGGGSSGGGTSEEEEE----EEEECCCBCCBTTBEEEECCT
T ss_pred ---ccccccccccCCcEEecc----eeeecCccccccCcEEEEcCh
Confidence 356677778888877653 456778889998776666664
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=4.3e-25 Score=266.07 Aligned_cols=312 Identities=19% Similarity=0.172 Sum_probs=240.2
Q ss_pred eEEEcCCCCCCCCCCCCCCCceeEEEccCCChHHHh-hcCCCCCCCcEEEcCCCCCCCcCC-CCCCCCCccEEEeeccCC
Q 045458 427 RLLDWPGYPLKSLPPNLQLDKTIEFKMLCSRIEELW-KGIKSLNMLKVMKVSYSQSLIKIP-DFTGVPNLEKLYLEGCTR 504 (1170)
Q Consensus 427 r~L~l~~~~l~~lp~~~~l~~L~~L~L~~s~i~~L~-~~l~~l~~L~~L~Ls~~~~l~~~~-~~~~l~~L~~L~L~~~~~ 504 (1170)
+.+++++..++.+|..+ +.++++|++++|++..++ ..+..+++|+.|+|++|......| .|.++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~- 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR- 91 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-
Confidence 45666666666666654 346667777777776653 456777777777777776444434 36777777777777754
Q ss_pred cccccc-cccCCCCccEEEeeCCCCCCccCcccc-CCcccEEEecCCCCCCccccccCCCCCCcEEEecCccCCccCc-c
Q 045458 505 LREIHP-SLLLHSKLVILNLTGCTSLATLPGKIF-MKSVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTAIGELPL-S 581 (1170)
Q Consensus 505 l~~~~~-~i~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~-~ 581 (1170)
+..++. .+..+++|+.|++++|......+..+. +++|++|++++|......+..+.++++|++|++++|.+..++. .
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence 344443 356777777777777655444444444 7778888888877666667778888888888888888887775 4
Q ss_pred hhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCCccCc-cccCCCCCC
Q 045458 582 IELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSITEVPS-SIELLTGLN 660 (1170)
Q Consensus 582 i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~ 660 (1170)
+..+++|+.|++++|......+..+..+++|+.|++++|.....+|.......+|+.|++++|.+..+|. .+..+++|+
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 251 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCC
T ss_pred hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccC
Confidence 7888899999998888766666678889999999999998888888777777799999999999998884 578899999
Q ss_pred EEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCCCcc-ccCCCCCcEEEecCCC
Q 045458 661 VLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQPPSG-IFHMKNLKALYFRGCK 739 (1170)
Q Consensus 661 ~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~L~~c~ 739 (1170)
.|++++|......+..+..+++|+.|++++|......|..+..+++|+.|++++|.++.++.. +..+++|+.|++++|+
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp EEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred eeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 999999987766667788999999999999977777788899999999999999999988765 5678999999999987
Q ss_pred C
Q 045458 740 G 740 (1170)
Q Consensus 740 ~ 740 (1170)
.
T Consensus 332 l 332 (477)
T 2id5_A 332 L 332 (477)
T ss_dssp E
T ss_pred c
Confidence 3
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=5.3e-25 Score=265.23 Aligned_cols=274 Identities=23% Similarity=0.224 Sum_probs=205.2
Q ss_pred CCcccEEEecCCCCCCccccccCCCCCCcEEEecCccCCccCcc-hhcCCCCCEEeccCCCCCCcCccccCCCCcccEEE
Q 045458 538 MKSVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTAIGELPLS-IELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLV 616 (1170)
Q Consensus 538 l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ 616 (1170)
+++|++|+|++|......|..++++++|++|++++|.+..+|.. +..+++|++|++++|......+..+..+++|+.|+
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 134 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence 45555555555544444456666677777777777777666653 46677777777777766666666777777777777
Q ss_pred eeCCCCCCCcchhhcCCcccCeEeccCcCCCccCc-cccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCC
Q 045458 617 LSGCSKLKKFPEIVESMEDLSELFLDGTSITEVPS-SIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLE 695 (1170)
Q Consensus 617 L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~ 695 (1170)
+++|......+..+..+++|+.|++++|.+..++. .+..+++|+.|++++|......+..+..+++|+.|++++|..+.
T Consensus 135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~ 214 (477)
T 2id5_A 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214 (477)
T ss_dssp ECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC
T ss_pred CCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc
Confidence 77776666666677777778888887787777764 46778888888888877666666677888888888888888888
Q ss_pred CCccccCCCCCCcEEEccCccCCCCCc-cccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCC
Q 045458 696 NVPETLGQVESLEELHISGTAIRQPPS-GIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGL 774 (1170)
Q Consensus 696 ~l~~~l~~l~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l 774 (1170)
.++.......+|+.|++++|.++.+|. .+..+++|+.|+|++|.... ..+..+..+
T Consensus 215 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-----------------------~~~~~~~~l 271 (477)
T 2id5_A 215 TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST-----------------------IEGSMLHEL 271 (477)
T ss_dssp EECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE-----------------------ECTTSCTTC
T ss_pred ccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc-----------------------cChhhcccc
Confidence 777777777788999999988888874 57788899999998887432 223346788
Q ss_pred CCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCcccch-hhhcCCCCCEeeccCccC
Q 045458 775 YSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVSLPA-SISRLSKLECLNLNGCKK 835 (1170)
Q Consensus 775 ~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~ 835 (1170)
++|+.|+|++|.+. +..|..+..+++|+.|+|++|.++.+|. .+..+++|+.|+|++|+.
T Consensus 272 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 272 LRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp TTCCEEECCSSCCS-EECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred ccCCEEECCCCccc-eECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 88999999999884 4567788899999999999999998875 457889999999998764
No 40
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=9.3e-25 Score=273.33 Aligned_cols=180 Identities=22% Similarity=0.220 Sum_probs=108.0
Q ss_pred CCcccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCcccc-ccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEE
Q 045458 632 SMEDLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIP-DSINGLKSLQSLNLSGCFKLENVPETLGQVESLEEL 710 (1170)
Q Consensus 632 ~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L 710 (1170)
.+.+|+.+++..+....++..+..+++|+.+++..+......+ ..+..+++|+.++++.|......+..+..+++|+.|
T Consensus 395 ~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L 474 (635)
T 4g8a_A 395 GTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 474 (635)
T ss_dssp SCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred hhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhh
Confidence 3334444444444443333444444444444444443333222 223344445555554444433444444444555555
Q ss_pred EccCccCC--CCCccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCC
Q 045458 711 HISGTAIR--QPPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLG 788 (1170)
Q Consensus 711 ~L~~~~i~--~lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~ 788 (1170)
++++|.+. ..|..+..+++|++|+|++| .+....|..+.++++|+.|+|++|++.
T Consensus 475 ~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-----------------------~L~~l~~~~f~~l~~L~~L~Ls~N~l~ 531 (635)
T 4g8a_A 475 KMAGNSFQENFLPDIFTELRNLTFLDLSQC-----------------------QLEQLSPTAFNSLSSLQVLNMSHNNFF 531 (635)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTS-----------------------CCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred hhhhcccccccCchhhhhccccCEEECCCC-----------------------ccCCcChHHHcCCCCCCEEECCCCcCC
Confidence 55544322 12344444555555555554 444556777899999999999999985
Q ss_pred CCCCcCccCCCCCCCEEECcCCCCcccc-hhhhcC-CCCCEeeccCccC
Q 045458 789 EGFIPNDIGNLRSLKVLCLSNNSFVSLP-ASISRL-SKLECLNLNGCKK 835 (1170)
Q Consensus 789 ~~~~~~~l~~l~sL~~L~Ls~n~l~~lp-~~i~~l-~~L~~L~L~~c~~ 835 (1170)
+..+..+..+++|+.|+|++|+++.++ ..+..+ ++|+.|+|++||.
T Consensus 532 -~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 532 -SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp -BCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred -CCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 456677899999999999999999775 567777 6899999999874
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=4.5e-24 Score=249.90 Aligned_cols=307 Identities=17% Similarity=0.104 Sum_probs=176.3
Q ss_pred CCCceeEEEccCCChHHHhhc-CCCCCCCcEEEcCCCCCCCcCC-CCCCCCCccEEEeeccCCcccccccccCCCCccEE
Q 045458 444 QLDKTIEFKMLCSRIEELWKG-IKSLNMLKVMKVSYSQSLIKIP-DFTGVPNLEKLYLEGCTRLREIHPSLLLHSKLVIL 521 (1170)
Q Consensus 444 ~l~~L~~L~L~~s~i~~L~~~-l~~l~~L~~L~Ls~~~~l~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L 521 (1170)
.+.++++|+++++.+..+|.. +..+++|++|++++|......+ .|..+++|++|++++|......+..+..+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 445555555555555555543 3556666666666665433333 36666666666666654333334445666666666
Q ss_pred EeeCCCCCCccCccc-c-CCcccEEEecCCCCCCccccccCCCCCCcEEEecCccCCccCcchhcCCCCCEEeccCCCCC
Q 045458 522 NLTGCTSLATLPGKI-F-MKSVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNF 599 (1170)
Q Consensus 522 ~L~~c~~l~~lp~~~-~-l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l 599 (1170)
++++|. +..+|..+ . +++|++|++++|......+..++++++|++|++++|.+..++ +..+++|+.|++++|...
T Consensus 123 ~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCS
T ss_pred ECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccccc
Confidence 666643 44555543 2 677777777777665555666777778888888887777664 556777777777776432
Q ss_pred CcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCC
Q 045458 600 KNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSING 679 (1170)
Q Consensus 600 ~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~ 679 (1170)
.+...++|+.|++++|..... |. ...++|+.|++++|.+... .. +..
T Consensus 200 -----~~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~-~~------------------------l~~ 246 (390)
T 3o6n_A 200 -----TLAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT-AW------------------------LLN 246 (390)
T ss_dssp -----EEECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC-GG------------------------GGG
T ss_pred -----ccCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc-HH------------------------HcC
Confidence 122334555555555443221 11 1123444455544444443 23 444
Q ss_pred CCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCCCccccCCCCCcEEEecCCCCCCCCCCcccCccccccccc
Q 045458 680 LKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQPPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRS 759 (1170)
Q Consensus 680 l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~ 759 (1170)
+++|+.|++++|......|..+..+++|+.|++++|.++.+|.....+++|++|++++|+..
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~------------------ 308 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL------------------ 308 (390)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC------------------
T ss_pred CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce------------------
Confidence 45555555555544333444555555555555555555555555555666666666665432
Q ss_pred CCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCcc
Q 045458 760 LDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVS 814 (1170)
Q Consensus 760 ~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~ 814 (1170)
.+|..+..+++|+.|++++|++.. ++ +..+++|+.|++++|.+..
T Consensus 309 ------~~~~~~~~l~~L~~L~L~~N~i~~--~~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 309 ------HVERNQPQFDRLENLYLDHNSIVT--LK--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp ------CCGGGHHHHTTCSEEECCSSCCCC--CC--CCTTCCCSEEECCSSCEEH
T ss_pred ------ecCccccccCcCCEEECCCCccce--eC--chhhccCCEEEcCCCCccc
Confidence 122334455667777777777775 22 6677888999999988774
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=6.7e-24 Score=248.47 Aligned_cols=301 Identities=17% Similarity=0.171 Sum_probs=159.6
Q ss_pred CCCccEEEeeccCCccccccc-ccCCCCccEEEeeCCCCCCccCc-ccc-CCcccEEEecCCCCCCccccccCCCCCCcE
Q 045458 491 VPNLEKLYLEGCTRLREIHPS-LLLHSKLVILNLTGCTSLATLPG-KIF-MKSVKKLVLSGCSKLKKFPKIVGNMECLSK 567 (1170)
Q Consensus 491 l~~L~~L~L~~~~~l~~~~~~-i~~l~~L~~L~L~~c~~l~~lp~-~~~-l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~ 567 (1170)
+++|++|+++++ .+..+|.. +..+++|+.|++++|.. ..++. .+. +++|++|++++|......|..++++++|++
T Consensus 44 l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCceEEEecCC-chhhCChhHhcccccCcEEECCCCcc-cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 345555555543 23333333 34445555555544332 22221 222 444555555554444434444555555555
Q ss_pred EEecCccCCccCcch-hcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCC
Q 045458 568 LLLDGTAIGELPLSI-ELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSI 646 (1170)
Q Consensus 568 L~L~~~~i~~l~~~i-~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l 646 (1170)
|++++|.+..+|..+ ..+++|++|++++|......|..+..+++|+.|++ ++|.+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l------------------------~~n~l 177 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL------------------------SSNRL 177 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEEC------------------------CSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEEC------------------------CCCcC
Confidence 555555555555442 44555555555554433333333444444444444 44444
Q ss_pred CccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCCCccccC
Q 045458 647 TEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQPPSGIFH 726 (1170)
Q Consensus 647 ~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~lp~~l~~ 726 (1170)
..++ +..+++|+.|++++|.... +...++|+.|++++|... .+|.. .+++|+.|++++|.++.. ..+..
T Consensus 178 ~~~~--~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~-~~~~~--~~~~L~~L~l~~n~l~~~-~~l~~ 246 (390)
T 3o6n_A 178 THVD--LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSIN-VVRGP--VNVELTILKLQHNNLTDT-AWLLN 246 (390)
T ss_dssp SBCC--GGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCC-EEECC--CCSSCCEEECCSSCCCCC-GGGGG
T ss_pred Cccc--cccccccceeecccccccc-----cCCCCcceEEECCCCeee-ecccc--ccccccEEECCCCCCccc-HHHcC
Confidence 4432 3445555555555543221 112345666666655332 22221 235667777777766654 35666
Q ss_pred CCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEE
Q 045458 727 MKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLC 806 (1170)
Q Consensus 727 l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~ 806 (1170)
+++|++|++++|.... ..|..+..+++|+.|++++|++.. ++..+..+++|+.|+
T Consensus 247 l~~L~~L~Ls~n~l~~-----------------------~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~ 301 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEK-----------------------IMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLD 301 (390)
T ss_dssp CTTCSEEECCSSCCCE-----------------------EESGGGTTCSSCCEEECCSSCCCE--EECSSSCCTTCCEEE
T ss_pred CCCccEEECCCCcCCC-----------------------cChhHccccccCCEEECCCCcCcc--cCcccCCCCCCCEEE
Confidence 7777777777765321 234445667777777777777643 555566677777777
Q ss_pred CcCCCCcccchhhhcCCCCCEeeccCccCCCcCC-CCCcccceeeccCC
Q 045458 807 LSNNSFVSLPASISRLSKLECLNLNGCKKLQSLP-PLPARMRIASVNGC 854 (1170)
Q Consensus 807 Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp-~lp~sL~~L~i~~C 854 (1170)
+++|.+..+|..+..+++|+.|++++|+ ++.+| ...++|+.|++.++
T Consensus 302 L~~n~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 302 LSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLTLSHN 349 (390)
T ss_dssp CCSSCCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCCCSEEECCSS
T ss_pred CCCCcceecCccccccCcCCEEECCCCc-cceeCchhhccCCEEEcCCC
Confidence 7777777777777777777777777765 33333 23345666666654
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=2.8e-23 Score=256.82 Aligned_cols=303 Identities=16% Similarity=0.153 Sum_probs=169.2
Q ss_pred CCCccEEEeeccCCccccccc-ccCCCCccEEEeeCCCCCCccCcccc-CCcccEEEecCCCCCCccccccCCCCCCcEE
Q 045458 491 VPNLEKLYLEGCTRLREIHPS-LLLHSKLVILNLTGCTSLATLPGKIF-MKSVKKLVLSGCSKLKKFPKIVGNMECLSKL 568 (1170)
Q Consensus 491 l~~L~~L~L~~~~~l~~~~~~-i~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L 568 (1170)
+.+++.|++++|. +..+|+. +..+++|+.|++++|......+..+. +++|++|+|++|......|..++++++|++|
T Consensus 50 l~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 4566666666642 3334433 34455555555555432222222222 4455555555544433333444444444444
Q ss_pred EecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCCc
Q 045458 569 LLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSITE 648 (1170)
Q Consensus 569 ~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~ 648 (1170)
++++|.+..+|.. .++.+++|+.|++++|......|..+..+++|+.|++++|.+..
T Consensus 129 ~L~~n~l~~l~~~-----------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 129 VLERNDLSSLPRG-----------------------IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp ECCSSCCCCCCTT-----------------------TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred EeeCCCCCCCCHH-----------------------HhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 4444444444433 23455555555555554444444455555555555555555555
Q ss_pred cCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCCCccccCCC
Q 045458 649 VPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQPPSGIFHMK 728 (1170)
Q Consensus 649 lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~ 728 (1170)
++ +..+++|+.|++++|.... +...++|+.|++++|.. ..++... .++|+.|++++|.++.. ..+..++
T Consensus 186 ~~--~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l-~~~~~~~--~~~L~~L~L~~n~l~~~-~~l~~l~ 254 (597)
T 3oja_B 186 VD--LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSI-NVVRGPV--NVELTILKLQHNNLTDT-AWLLNYP 254 (597)
T ss_dssp CC--GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCC-CEEECSC--CSCCCEEECCSSCCCCC-GGGGGCT
T ss_pred cC--hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcc-ccccccc--CCCCCEEECCCCCCCCC-hhhccCC
Confidence 43 4455666666666654321 22345666666666643 2222222 25677777777777663 5566777
Q ss_pred CCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECc
Q 045458 729 NLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLS 808 (1170)
Q Consensus 729 ~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls 808 (1170)
+|+.|+|++|.... ..|..+..+++|+.|+|++|.+.. +|..+..+++|+.|+|+
T Consensus 255 ~L~~L~Ls~N~l~~-----------------------~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls 309 (597)
T 3oja_B 255 GLVEVDLSYNELEK-----------------------IMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLS 309 (597)
T ss_dssp TCSEEECCSSCCCE-----------------------EESGGGTTCSSCCEEECTTSCCCE--EECSSSCCTTCCEEECC
T ss_pred CCCEEECCCCccCC-----------------------CCHHHhcCccCCCEEECCCCCCCC--CCcccccCCCCcEEECC
Confidence 77777777765331 234556677778888888877743 56666777788888888
Q ss_pred CCCCcccchhhhcCCCCCEeeccCccCCCcCC-CCCcccceeeccCC
Q 045458 809 NNSFVSLPASISRLSKLECLNLNGCKKLQSLP-PLPARMRIASVNGC 854 (1170)
Q Consensus 809 ~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp-~lp~sL~~L~i~~C 854 (1170)
+|.+..+|..+..+++|+.|+|++|+. ..+| ...++|+.|+++++
T Consensus 310 ~N~l~~i~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 310 HNHLLHVERNQPQFDRLENLYLDHNSI-VTLKLSTHHTLKNLTLSHN 355 (597)
T ss_dssp SSCCCCCGGGHHHHTTCSEEECCSSCC-CCCCCCTTCCCSEEECCSS
T ss_pred CCCCCccCcccccCCCCCEEECCCCCC-CCcChhhcCCCCEEEeeCC
Confidence 888877777777788888888887653 3332 22334555555443
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.7e-23 Score=258.84 Aligned_cols=284 Identities=16% Similarity=0.106 Sum_probs=191.8
Q ss_pred CCceeEEEccCCChHHHhhc-CCCCCCCcEEEcCCCCCCCcCC-CCCCCCCccEEEeeccCCcccccccccCCCCccEEE
Q 045458 445 LDKTIEFKMLCSRIEELWKG-IKSLNMLKVMKVSYSQSLIKIP-DFTGVPNLEKLYLEGCTRLREIHPSLLLHSKLVILN 522 (1170)
Q Consensus 445 l~~L~~L~L~~s~i~~L~~~-l~~l~~L~~L~Ls~~~~l~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~ 522 (1170)
+.+++.++++++.+..+|.. +..+++|++|+|++|......| .|+.+++|++|+|++|......+..++.+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 34444444444444444432 3445555555555555333333 355566666666665543333333445566666666
Q ss_pred eeCCCCCCccCccc-c-CCcccEEEecCCCCCCccccccCCCCCCcEEEecCccCCccCcchhcCCCCCEEeccCCCCCC
Q 045458 523 LTGCTSLATLPGKI-F-MKSVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFK 600 (1170)
Q Consensus 523 L~~c~~l~~lp~~~-~-l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~ 600 (1170)
+++|. +..+|..+ . +++|++|++++|......|..++++++|++|++++|.+..++ +..+++|+.|++++|...
T Consensus 130 L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~- 205 (597)
T 3oja_B 130 LERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS- 205 (597)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCS-
T ss_pred eeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccc-
Confidence 66643 33444443 2 667777777777666656667777788888888888777765 566788888888877532
Q ss_pred cCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCC
Q 045458 601 NLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGL 680 (1170)
Q Consensus 601 ~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l 680 (1170)
.+...++|+.|++++|.... ++... .++|+.|++++|.+... ..+..+++|+.|++++|......|..+..+
T Consensus 206 ----~l~~~~~L~~L~ls~n~l~~-~~~~~--~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 277 (597)
T 3oja_B 206 ----TLAIPIAVEELDASHNSINV-VRGPV--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277 (597)
T ss_dssp ----EEECCTTCSEEECCSSCCCE-EECSC--CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred ----cccCCchhheeeccCCcccc-ccccc--CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence 23345678888888876533 22221 35788888888888874 678888999999999988888888888889
Q ss_pred CCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCCCccccCCCCCcEEEecCCCCC
Q 045458 681 KSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQPPSGIFHMKNLKALYFRGCKGS 741 (1170)
Q Consensus 681 ~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~~ 741 (1170)
++|+.|+|++|. +..+|..+..+++|+.|++++|.++.+|..+..+++|++|+|++|...
T Consensus 278 ~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 278 QRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp SSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCC
T ss_pred cCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCC
Confidence 999999999884 445677777889999999999999999888888999999999988743
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=2.2e-22 Score=229.79 Aligned_cols=291 Identities=18% Similarity=0.174 Sum_probs=156.0
Q ss_pred CceEEEcCCCCCCCCCCCCCCCceeEEEccCCChHHHhh-cCCCCCCCcEEEcCCCCCCCcCC-CCCCCCCccEEEeecc
Q 045458 425 KLRLLDWPGYPLKSLPPNLQLDKTIEFKMLCSRIEELWK-GIKSLNMLKVMKVSYSQSLIKIP-DFTGVPNLEKLYLEGC 502 (1170)
Q Consensus 425 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~s~i~~L~~-~l~~l~~L~~L~Ls~~~~l~~~~-~~~~l~~L~~L~L~~~ 502 (1170)
++++++++++.++.+|..+ ..++++|+++++.+..++. .+..+++|++|++++|......| .|..+++|++|++++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 4677777777777777655 3466677777777666654 46667777777777766444434 3666777777777665
Q ss_pred CCcccccccccCCCCccEEEeeCCCCCCccCcccc-CCcccEEEecCCCCCC--ccccccCCCCCCcEEEecCccCCccC
Q 045458 503 TRLREIHPSLLLHSKLVILNLTGCTSLATLPGKIF-MKSVKKLVLSGCSKLK--KFPKIVGNMECLSKLLLDGTAIGELP 579 (1170)
Q Consensus 503 ~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~~~~~~--~l~~~l~~l~~L~~L~L~~~~i~~l~ 579 (1170)
. +..+|..+. ++|+.|++++|......+..+. +++|++|++++|.... ..+..+.++++|++|++++|.+..+|
T Consensus 111 ~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~ 187 (330)
T 1xku_A 111 Q-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP 187 (330)
T ss_dssp C-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred c-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC
Confidence 3 344444433 4566666665432222222222 5556666665554432 34445556666666666666666555
Q ss_pred cchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCCccCccccCCCCC
Q 045458 580 LSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSITEVPSSIELLTGL 659 (1170)
Q Consensus 580 ~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L 659 (1170)
..+. ++|+.|++++|......|..+..+++|+.|++++|......+..+..+++|+.|++++|.+..+|..+..+++|
T Consensus 188 ~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L 265 (330)
T 1xku_A 188 QGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI 265 (330)
T ss_dssp SSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSC
T ss_pred cccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCc
Confidence 4433 55666666655544444445555555555555555444433444455555555555555555555555555555
Q ss_pred CEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCC---CCccccCCCCCcEEEec
Q 045458 660 NVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQ---PPSGIFHMKNLKALYFR 736 (1170)
Q Consensus 660 ~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~---lp~~l~~l~~L~~L~L~ 736 (1170)
+.|++++|.....-+..+... .......+|+.|++++|.+.. .|..+..+++|+.++|+
T Consensus 266 ~~L~l~~N~i~~~~~~~f~~~------------------~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~ 327 (330)
T 1xku_A 266 QVVYLHNNNISAIGSNDFCPP------------------GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327 (330)
T ss_dssp CEEECCSSCCCCCCTTSSSCS------------------SCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC-
T ss_pred CEEECCCCcCCccChhhcCCc------------------ccccccccccceEeecCcccccccCccccccccceeEEEec
Confidence 555555444322222222111 000123566677777776652 24556667777777777
Q ss_pred CCC
Q 045458 737 GCK 739 (1170)
Q Consensus 737 ~c~ 739 (1170)
+|+
T Consensus 328 ~N~ 330 (330)
T 1xku_A 328 NYK 330 (330)
T ss_dssp ---
T ss_pred ccC
Confidence 653
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=3.7e-22 Score=227.91 Aligned_cols=199 Identities=22% Similarity=0.254 Sum_probs=120.4
Q ss_pred CCcccEEEecCCCCCCccccccCCCCCCcEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEe
Q 045458 538 MKSVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVL 617 (1170)
Q Consensus 538 l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L 617 (1170)
+++|++|++++|......|..++++++|++|++++|.+..+|..+. ++|+.|++++|......+..+..+++|+.|++
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 152 (330)
T 1xku_A 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVEL 152 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEEC
T ss_pred CCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEEC
Confidence 4455555555554444445666666667777777776666665543 56677777666655444445666677777777
Q ss_pred eCCCCCC--CcchhhcCCcccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCC
Q 045458 618 SGCSKLK--KFPEIVESMEDLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLE 695 (1170)
Q Consensus 618 ~~~~~~~--~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~ 695 (1170)
++|.... ..+..+..+++|+.|++++|.+..+|..+. ++|+.|++++|......|..+..+++|+.|++++|....
T Consensus 153 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 230 (330)
T 1xku_A 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230 (330)
T ss_dssp CSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred CCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce
Confidence 6665532 445556666677777777777766665443 566666666666555555556666666666666665444
Q ss_pred CCccccCCCCCCcEEEccCccCCCCCccccCCCCCcEEEecCCCC
Q 045458 696 NVPETLGQVESLEELHISGTAIRQPPSGIFHMKNLKALYFRGCKG 740 (1170)
Q Consensus 696 ~l~~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~ 740 (1170)
..+..+..+++|+.|++++|.++.+|..+..+++|++|++++|..
T Consensus 231 ~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 231 VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp ECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCC
T ss_pred eChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcC
Confidence 344455556666666666666666665555555555555555543
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=1.8e-22 Score=230.62 Aligned_cols=289 Identities=19% Similarity=0.197 Sum_probs=162.5
Q ss_pred CceEEEcCCCCCCCCCCCCCCCceeEEEccCCChHHHh-hcCCCCCCCcEEEcCCCCCCCcCC-CCCCCCCccEEEeecc
Q 045458 425 KLRLLDWPGYPLKSLPPNLQLDKTIEFKMLCSRIEELW-KGIKSLNMLKVMKVSYSQSLIKIP-DFTGVPNLEKLYLEGC 502 (1170)
Q Consensus 425 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~s~i~~L~-~~l~~l~~L~~L~Ls~~~~l~~~~-~~~~l~~L~~L~L~~~ 502 (1170)
++++++++++.++.+|..+ ..+|++|+++++.+..++ ..+..+++|++|++++|......| .|.++++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 4677777777777777665 356777777777776663 356677777777777666443333 3666677777777665
Q ss_pred CCcccccccccCCCCccEEEeeCCCCCCccCcc-cc-CCcccEEEecCCCCCC--ccccccCCCCCCcEEEecCccCCcc
Q 045458 503 TRLREIHPSLLLHSKLVILNLTGCTSLATLPGK-IF-MKSVKKLVLSGCSKLK--KFPKIVGNMECLSKLLLDGTAIGEL 578 (1170)
Q Consensus 503 ~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~-~~-l~~L~~L~L~~~~~~~--~l~~~l~~l~~L~~L~L~~~~i~~l 578 (1170)
. +..+|..+. ++|++|++++|.. ..++.. +. +++|+.|++++|.... ..+..+..+ +|++|++++|.+..+
T Consensus 113 ~-l~~l~~~~~--~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 113 H-LVEIPPNLP--SSLVELRIHDNRI-RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI 187 (332)
T ss_dssp C-CCSCCSSCC--TTCCEEECCSSCC-CCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred c-CCccCcccc--ccCCEEECCCCcc-CccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence 3 345554443 5666666666432 333332 22 6666666666665432 344455555 666666666666666
Q ss_pred CcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCCccCccccCCCC
Q 045458 579 PLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSITEVPSSIELLTG 658 (1170)
Q Consensus 579 ~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~ 658 (1170)
|..+. ++|+.|++++|......+..+..+++|+.|++++|......+..+..+++|+.|++++|.+..+|..+..+++
T Consensus 188 ~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~ 265 (332)
T 2ft3_A 188 PKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKL 265 (332)
T ss_dssp CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTT
T ss_pred Ccccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCcc
Confidence 65443 5666666666655444445556666666666666555554444555556666666666666665555555555
Q ss_pred CCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCC---CCCccccCCCCCcEEEe
Q 045458 659 LNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIR---QPPSGIFHMKNLKALYF 735 (1170)
Q Consensus 659 L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~---~lp~~l~~l~~L~~L~L 735 (1170)
|+.|++++|.....-+..+.... ......+|+.|++++|.+. ..|..+..+++|+.|++
T Consensus 266 L~~L~l~~N~l~~~~~~~~~~~~------------------~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l 327 (332)
T 2ft3_A 266 LQVVYLHTNNITKVGVNDFCPVG------------------FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327 (332)
T ss_dssp CCEEECCSSCCCBCCTTSSSCSS------------------CCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC
T ss_pred CCEEECCCCCCCccChhHccccc------------------cccccccccceEeecCcccccccCcccccccchhhhhhc
Confidence 55555555543322222222110 0001245666666666654 22445556677777777
Q ss_pred cCCC
Q 045458 736 RGCK 739 (1170)
Q Consensus 736 ~~c~ 739 (1170)
++|+
T Consensus 328 ~~n~ 331 (332)
T 2ft3_A 328 GNYK 331 (332)
T ss_dssp ----
T ss_pred cccc
Confidence 6664
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=5.2e-22 Score=226.81 Aligned_cols=197 Identities=21% Similarity=0.271 Sum_probs=123.9
Q ss_pred CCcccEEEecCCCCCCccccccCCCCCCcEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEe
Q 045458 538 MKSVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVL 617 (1170)
Q Consensus 538 l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L 617 (1170)
+++|++|++++|......|..++++++|++|++++|.+..+|..+. ++|++|++++|......+..+..+++|+.|++
T Consensus 77 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 154 (332)
T 2ft3_A 77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEM 154 (332)
T ss_dssp CTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEEC
T ss_pred CCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEEC
Confidence 4445555555554444445566667777777777777766666554 67777777776654444445667777777777
Q ss_pred eCCCCCC--CcchhhcCCcccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCC
Q 045458 618 SGCSKLK--KFPEIVESMEDLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLE 695 (1170)
Q Consensus 618 ~~~~~~~--~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~ 695 (1170)
++|.... ..+..+..+ +|+.|++++|.+..+|..+. ++|+.|++++|......+..+..+++|+.|++++|....
T Consensus 155 ~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~ 231 (332)
T 2ft3_A 155 GGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231 (332)
T ss_dssp CSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC
T ss_pred CCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc
Confidence 7766532 445555555 77777777777777766543 567777777766555555566666667777776665544
Q ss_pred CCccccCCCCCCcEEEccCccCCCCCccccCCCCCcEEEecCCC
Q 045458 696 NVPETLGQVESLEELHISGTAIRQPPSGIFHMKNLKALYFRGCK 739 (1170)
Q Consensus 696 ~l~~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~ 739 (1170)
..+..+..+++|+.|++++|.++.+|..+..+++|++|++++|+
T Consensus 232 ~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 232 IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp CCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC
T ss_pred CChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC
Confidence 44445666666666666666666666666666666666666555
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=1.4e-22 Score=229.01 Aligned_cols=251 Identities=22% Similarity=0.274 Sum_probs=137.5
Q ss_pred cccEEEecCCCCCC--ccccccCCCCCCcEEEecC-ccC-CccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEE
Q 045458 540 SVKKLVLSGCSKLK--KFPKIVGNMECLSKLLLDG-TAI-GELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSL 615 (1170)
Q Consensus 540 ~L~~L~L~~~~~~~--~l~~~l~~l~~L~~L~L~~-~~i-~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L 615 (1170)
+++.|++++|.... .+|..++++++|++|++++ +.+ ..+|..+..+++|++|++++|.....+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 34444444444333 4444444444444444442 333 2344444444444444444444333344444444444444
Q ss_pred EeeCCCCCCCcchhhcCCcccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCC-CCCEEEeeCcCCC
Q 045458 616 VLSGCSKLKKFPEIVESMEDLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLK-SLQSLNLSGCFKL 694 (1170)
Q Consensus 616 ~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~-~L~~L~L~~c~~l 694 (1170)
++++|.....+ |..+..+++|+.|++++|.....+|..+..++ +|+.|++++|...
T Consensus 131 ~Ls~N~l~~~~-----------------------p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 131 DFSYNALSGTL-----------------------PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp ECCSSEEESCC-----------------------CGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred eCCCCccCCcC-----------------------ChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence 44444333333 44444444444444444443334444444444 4444444444443
Q ss_pred CCCccccCCCCCCcEEEccCccCC-CCCccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCC
Q 045458 695 ENVPETLGQVESLEELHISGTAIR-QPPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSG 773 (1170)
Q Consensus 695 ~~l~~~l~~l~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~ 773 (1170)
..+|..+..++ |+.|++++|.++ ..|..+..+++|+.|++++|.... .++.+..
T Consensus 188 ~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------------~~~~~~~ 242 (313)
T 1ogq_A 188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF------------------------DLGKVGL 242 (313)
T ss_dssp EECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC------------------------BGGGCCC
T ss_pred ccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee------------------------ecCcccc
Confidence 34444444443 555555555554 234445555666666666554221 1112456
Q ss_pred CCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCc-ccchhhhcCCCCCEeeccCccCCCcCC
Q 045458 774 LYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFV-SLPASISRLSKLECLNLNGCKKLQSLP 840 (1170)
Q Consensus 774 l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp 840 (1170)
+++|+.|++++|.+. +.+|..+..+++|+.|+|++|+++ .+|.. ..+++|+.|++++|+.+...|
T Consensus 243 l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 243 SKNLNGLDLRNNRIY-GTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CTTCCEEECCSSCCE-ECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred cCCCCEEECcCCccc-CcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 678888888888884 457888999999999999999998 66754 889999999999998776544
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=3e-21 Score=219.47 Aligned_cols=220 Identities=25% Similarity=0.405 Sum_probs=155.7
Q ss_pred CCCcEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEecc
Q 045458 563 ECLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLD 642 (1170)
Q Consensus 563 ~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~ 642 (1170)
.+++.|+++++.+..+|..+..+++|++|++++|.. . .+|..+..+++|+.|+++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l------------------------~-~lp~~~~~l~~L~~L~Ls 135 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGL------------------------M-ELPDTMQQFAGLETLTLA 135 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCC------------------------C-CCCSCGGGGTTCSEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCc------------------------c-chhHHHhccCCCCEEECC
Confidence 455666666666665555555555555555555443 3 444444555555555555
Q ss_pred CcCCCccCccccCCCCCCEEeccCCcCCccccccCCC---------CCCCCEEEeeCcCCCCCCccccCCCCCCcEEEcc
Q 045458 643 GTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSING---------LKSLQSLNLSGCFKLENVPETLGQVESLEELHIS 713 (1170)
Q Consensus 643 ~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~---------l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~ 713 (1170)
+|.+..+|..+..+++|+.|++++|...+.+|..+.. +++|+.|++++|... .+|..++.+++|++|+++
T Consensus 136 ~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~ 214 (328)
T 4fcg_A 136 RNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIR 214 (328)
T ss_dssp SCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEE
T ss_pred CCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEcc
Confidence 5666667777777777777777777777777766543 788888888887444 777778888888888888
Q ss_pred CccCCCCCccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCc
Q 045458 714 GTAIRQPPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIP 793 (1170)
Q Consensus 714 ~~~i~~lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~ 793 (1170)
+|.++.+|..+..+++|++|++++|.... .+|..+..+++|+.|+|++|++. +.+|
T Consensus 215 ~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~-----------------------~~p~~~~~l~~L~~L~L~~n~~~-~~~p 270 (328)
T 4fcg_A 215 NSPLSALGPAIHHLPKLEELDLRGCTALR-----------------------NYPPIFGGRAPLKRLILKDCSNL-LTLP 270 (328)
T ss_dssp SSCCCCCCGGGGGCTTCCEEECTTCTTCC-----------------------BCCCCTTCCCCCCEEECTTCTTC-CBCC
T ss_pred CCCCCcCchhhccCCCCCEEECcCCcchh-----------------------hhHHHhcCCCCCCEEECCCCCch-hhcc
Confidence 88888888888888888888888876432 45666777888888888888774 5677
Q ss_pred CccCCCCCCCEEECcCCCCc-ccchhhhcCCCCCEeeccC
Q 045458 794 NDIGNLRSLKVLCLSNNSFV-SLPASISRLSKLECLNLNG 832 (1170)
Q Consensus 794 ~~l~~l~sL~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~ 832 (1170)
..+..+++|+.|+|++|++. .+|..+.++++|+.+.+..
T Consensus 271 ~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 77888888888888887654 6788888888888887765
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=3.5e-21 Score=219.02 Aligned_cols=200 Identities=23% Similarity=0.392 Sum_probs=166.9
Q ss_pred CCcccEEEecCCCCCCccccccCCCCCCcEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCC---------
Q 045458 538 MKSVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISS--------- 608 (1170)
Q Consensus 538 l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~--------- 608 (1170)
+++|++|++++|... .+|..++++++|++|++++|.+..+|..+..+++|+.|++++|.....+|..+..
T Consensus 103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~ 181 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181 (328)
T ss_dssp GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEE
T ss_pred CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhcc
Confidence 445555555555433 5666677777777777777777777777788888888888887777777766554
Q ss_pred CCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEe
Q 045458 609 LKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNL 688 (1170)
Q Consensus 609 l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L 688 (1170)
+++|+.|++++|... .+|..+..+++|+.|++++|.+..+|..+..+++|+.|++++|...+.+|..+..+++|+.|++
T Consensus 182 l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 260 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260 (328)
T ss_dssp STTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred CCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence 899999999998665 7888899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCcCCCCCCccccCCCCCCcEEEccCccCC-CCCccccCCCCCcEEEecCCC
Q 045458 689 SGCFKLENVPETLGQVESLEELHISGTAIR-QPPSGIFHMKNLKALYFRGCK 739 (1170)
Q Consensus 689 ~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~c~ 739 (1170)
++|.....+|..++.+++|+.|++++|.+. .+|..+..+++|+.+.+..+.
T Consensus 261 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp TTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred CCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 999999999999999999999999997654 789999999999999987654
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=2.1e-22 Score=227.67 Aligned_cols=183 Identities=18% Similarity=0.251 Sum_probs=94.8
Q ss_pred ccccccCCCCCCcEEEecCccCC-ccCcchhcCCCCCEEeccCCCCCCcCccccCCCC-cccEEEeeCCCCCCCcchhhc
Q 045458 554 KFPKIVGNMECLSKLLLDGTAIG-ELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLK-CLRSLVLSGCSKLKKFPEIVE 631 (1170)
Q Consensus 554 ~l~~~l~~l~~L~~L~L~~~~i~-~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~-~L~~L~L~~~~~~~~~p~~~~ 631 (1170)
.+|..++++++|++|++++|.+. .+|..+..+++|++|++++|.....+|..+..++ +|+.|++++|......|..+.
T Consensus 116 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~ 195 (313)
T 1ogq_A 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195 (313)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG
T ss_pred cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh
Confidence 33334444444444444444443 3444444444444444444443334444444444 444444444444444444444
Q ss_pred CCcccCeEeccCcCCC-ccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEE
Q 045458 632 SMEDLSELFLDGTSIT-EVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEEL 710 (1170)
Q Consensus 632 ~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L 710 (1170)
.+. |+.|++++|.+. ..|..+..+++|+.|++++|......|. +..+++|++|++++|.....+|..+..+++|+.|
T Consensus 196 ~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 273 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273 (313)
T ss_dssp GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEE
T ss_pred CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEE
Confidence 444 555555555554 3344455555555555555554444433 5556666666666665555566666666666666
Q ss_pred EccCccCC-CCCccccCCCCCcEEEecCCC
Q 045458 711 HISGTAIR-QPPSGIFHMKNLKALYFRGCK 739 (1170)
Q Consensus 711 ~L~~~~i~-~lp~~l~~l~~L~~L~L~~c~ 739 (1170)
++++|.++ .+|.. ..+++|+.|++.+|+
T Consensus 274 ~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 274 NVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp ECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 66666666 34443 566667777776665
No 53
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=2.7e-24 Score=258.02 Aligned_cols=353 Identities=18% Similarity=0.200 Sum_probs=204.6
Q ss_pred CCceeEEEccCCChHHHh--hcCCCCCCCcEEEcCCCCCCCc----CCC-CCCCCCccEEEeeccCCccccccccc-CCC
Q 045458 445 LDKTIEFKMLCSRIEELW--KGIKSLNMLKVMKVSYSQSLIK----IPD-FTGVPNLEKLYLEGCTRLREIHPSLL-LHS 516 (1170)
Q Consensus 445 l~~L~~L~L~~s~i~~L~--~~l~~l~~L~~L~Ls~~~~l~~----~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~-~l~ 516 (1170)
+++|++|+++++++...+ ..+..+++|+.|++++|..... ++. +..+++|++|++++|......+..+. .++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 346777777777765432 2255566666666666653211 111 34445555555555432111111111 111
Q ss_pred CccEEEeeCCCCCCccCccccCCcccEEEecCCCCCC----ccccccCCCCCCcEEEecCccCCcc-Ccch-----hcCC
Q 045458 517 KLVILNLTGCTSLATLPGKIFMKSVKKLVLSGCSKLK----KFPKIVGNMECLSKLLLDGTAIGEL-PLSI-----ELLS 586 (1170)
Q Consensus 517 ~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~~~----~l~~~l~~l~~L~~L~L~~~~i~~l-~~~i-----~~l~ 586 (1170)
. ...+|++|++++|.... .++..+..+++|++|++++|.+... +..+ ...+
T Consensus 82 ~-------------------~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 142 (461)
T 1z7x_W 82 T-------------------PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC 142 (461)
T ss_dssp S-------------------TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred h-------------------CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCC
Confidence 0 00145555665554432 3455666666666666666665432 1111 1245
Q ss_pred CCCEEeccCCCCCCc----CccccCCCCcccEEEeeCCCCCCCcchhhc-----CCcccCeEeccCcCCCc-----cCcc
Q 045458 587 KLVSLDLNNCKNFKN----LPVTISSLKCLRSLVLSGCSKLKKFPEIVE-----SMEDLSELFLDGTSITE-----VPSS 652 (1170)
Q Consensus 587 ~L~~L~L~~~~~l~~----lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~-----~l~~L~~L~l~~~~l~~-----lp~~ 652 (1170)
+|++|++++|..... ++..+..+++|++|++++|......+..+. ..++|+.|++++|.+.. ++..
T Consensus 143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 677777777654432 344455567777777777664333222222 35577777777777764 4666
Q ss_pred ccCCCCCCEEeccCCcCCcc----c-cccCCCCCCCCEEEeeCcCCCCC----CccccCCCCCCcEEEccCccCCCC---
Q 045458 653 IELLTGLNVLNLNDCKNLVR----I-PDSINGLKSLQSLNLSGCFKLEN----VPETLGQVESLEELHISGTAIRQP--- 720 (1170)
Q Consensus 653 i~~l~~L~~L~L~~~~~l~~----l-p~~l~~l~~L~~L~L~~c~~l~~----l~~~l~~l~~L~~L~L~~~~i~~l--- 720 (1170)
+..+++|+.|++++|..... + +..+..+++|++|++++|..... ++..+..+++|++|++++|.+...
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 77778888888887754332 1 22233577888888888844332 566666678888888888876522
Q ss_pred --Ccccc-CCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCc---C
Q 045458 721 --PSGIF-HMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIP---N 794 (1170)
Q Consensus 721 --p~~l~-~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~---~ 794 (1170)
...+. ..++|++|++++|...... ...++..+..+++|+.|++++|.+.+.... .
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~-------------------~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 363 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAAC-------------------CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 363 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGG-------------------HHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH
T ss_pred HHHHHhccCCccceeeEcCCCCCchHH-------------------HHHHHHHHhhCCCccEEEccCCccccccHHHHHH
Confidence 22222 2368888888888643200 012334455677899999999887431111 1
Q ss_pred ccC-CCCCCCEEECcCCCCc-----ccchhhhcCCCCCEeeccCccC
Q 045458 795 DIG-NLRSLKVLCLSNNSFV-----SLPASISRLSKLECLNLNGCKK 835 (1170)
Q Consensus 795 ~l~-~l~sL~~L~Ls~n~l~-----~lp~~i~~l~~L~~L~L~~c~~ 835 (1170)
.+. ..++|+.|++++|.++ .+|..+..+++|++|++++|+.
T Consensus 364 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 364 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred HHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 122 2678999999999888 6788888899999999998853
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=1.5e-23 Score=260.10 Aligned_cols=274 Identities=13% Similarity=0.112 Sum_probs=141.3
Q ss_pred CCcccEEEecCCCCCCccccccCCCCCCcEEEecCccC----CccCcchhcCCCCCEEeccCCCCCCcCccccCCCCccc
Q 045458 538 MKSVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTAI----GELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLR 613 (1170)
Q Consensus 538 l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~i----~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~ 613 (1170)
+++|+.|++++|.. ..++..+.++++|++|.++.... ...+..+..+++|+.|+++++ ....+|..+..+++|+
T Consensus 219 ~~~L~~L~L~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~ 296 (592)
T 3ogk_B 219 CRSLVSVKVGDFEI-LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIR 296 (592)
T ss_dssp CTTCCEEECSSCBG-GGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCC
T ss_pred CCCCcEEeccCccH-HHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCc
Confidence 45555555555432 22444555555555555543211 222334455555555555553 2333444455555666
Q ss_pred EEEeeCCCCCCC-cchhhcCCcccCeEeccCcCCC--ccCccccCCCCCCEEeccC----------CcCCcc--ccccCC
Q 045458 614 SLVLSGCSKLKK-FPEIVESMEDLSELFLDGTSIT--EVPSSIELLTGLNVLNLND----------CKNLVR--IPDSIN 678 (1170)
Q Consensus 614 ~L~L~~~~~~~~-~p~~~~~l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~L~~----------~~~l~~--lp~~l~ 678 (1170)
+|++++|..... ++..+..+++|+.|++. +.+. .++.....+++|+.|++++ |..++. ++....
T Consensus 297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~ 375 (592)
T 3ogk_B 297 KLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ 375 (592)
T ss_dssp EEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHH
T ss_pred EEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHh
Confidence 666665552211 22334556666666665 2222 2333334556666666663 433332 122223
Q ss_pred CCCCCCEEEeeCcCCCCCCccccCC-CCCCcEEEcc----CccCCCCCc------cccCCCCCcEEEecCCCCCCCCCCc
Q 045458 679 GLKSLQSLNLSGCFKLENVPETLGQ-VESLEELHIS----GTAIRQPPS------GIFHMKNLKALYFRGCKGSPSSTSW 747 (1170)
Q Consensus 679 ~l~~L~~L~L~~c~~l~~l~~~l~~-l~~L~~L~L~----~~~i~~lp~------~l~~l~~L~~L~L~~c~~~~~~~~~ 747 (1170)
.+++|+.|+++.+......+..++. +++|+.|+++ .+.++..|. .+..+++|++|+++.|.......
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~-- 453 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL-- 453 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH--
T ss_pred hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH--
Confidence 4566666666443332222233332 5666666664 344554332 24457777777776654211000
Q ss_pred ccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCc--ccchhhhcCCCC
Q 045458 748 SRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFV--SLPASISRLSKL 825 (1170)
Q Consensus 748 ~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~--~lp~~i~~l~~L 825 (1170)
.+......+++|+.|+|++|++++..++..+..+++|+.|+|++|.++ .++..+..+++|
T Consensus 454 ------------------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L 515 (592)
T 3ogk_B 454 ------------------GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSL 515 (592)
T ss_dssp ------------------HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSC
T ss_pred ------------------HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCcc
Confidence 000001235667777887777654344555567777888888887765 245555677778
Q ss_pred CEeeccCcc
Q 045458 826 ECLNLNGCK 834 (1170)
Q Consensus 826 ~~L~L~~c~ 834 (1170)
+.|+|++|+
T Consensus 516 ~~L~ls~n~ 524 (592)
T 3ogk_B 516 RYLWVQGYR 524 (592)
T ss_dssp CEEEEESCB
T ss_pred CeeECcCCc
Confidence 888888777
No 55
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=1.2e-24 Score=261.12 Aligned_cols=372 Identities=19% Similarity=0.131 Sum_probs=185.8
Q ss_pred CCceEEEcCCCCCCCCCCC--C-CCCceeEEEccCCChH-----HHhhcCCCCCCCcEEEcCCCCCCCcCC-C-CCCCC-
Q 045458 424 NKLRLLDWPGYPLKSLPPN--L-QLDKTIEFKMLCSRIE-----ELWKGIKSLNMLKVMKVSYSQSLIKIP-D-FTGVP- 492 (1170)
Q Consensus 424 ~~Lr~L~l~~~~l~~lp~~--~-~l~~L~~L~L~~s~i~-----~L~~~l~~l~~L~~L~Ls~~~~l~~~~-~-~~~l~- 492 (1170)
.+|++|+++++.++..+.. + .+++|++|+++++.+. .++..+..+++|++|++++|......+ . +..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 3455555555555433321 2 4556666666666655 456666677777777777765322111 1 11222
Q ss_pred ---CccEEEeeccCCcc----cccccccCCCCccEEEeeCCCCCCccCccc----c--CCcccEEEecCCCCCCc----c
Q 045458 493 ---NLEKLYLEGCTRLR----EIHPSLLLHSKLVILNLTGCTSLATLPGKI----F--MKSVKKLVLSGCSKLKK----F 555 (1170)
Q Consensus 493 ---~L~~L~L~~~~~l~----~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~----~--l~~L~~L~L~~~~~~~~----l 555 (1170)
+|++|++++|.... .++..+..+++|+.|++++|......+..+ . .++|++|++++|..... +
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 67777777765332 446667777777777777765322111111 1 34577777777654432 3
Q ss_pred ccccCCCCCCcEEEecCccCCccC-cchh-----cCCCCCEEeccCCCCCCc----CccccCCCCcccEEEeeCCCCCCC
Q 045458 556 PKIVGNMECLSKLLLDGTAIGELP-LSIE-----LLSKLVSLDLNNCKNFKN----LPVTISSLKCLRSLVLSGCSKLKK 625 (1170)
Q Consensus 556 ~~~l~~l~~L~~L~L~~~~i~~l~-~~i~-----~l~~L~~L~L~~~~~l~~----lp~~l~~l~~L~~L~L~~~~~~~~ 625 (1170)
+..+..+++|++|++++|.+.... ..+. ..++|+.|++++|..... ++..+..+++|++|++++|.....
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 444555566666666666653321 1111 244666666666643332 344444555555555555533221
Q ss_pred c-----chhhcCCcccCeEeccCcCCCc-----cCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCC
Q 045458 626 F-----PEIVESMEDLSELFLDGTSITE-----VPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLE 695 (1170)
Q Consensus 626 ~-----p~~~~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~ 695 (1170)
. +.....+++|+.|++++|.++. ++..+..+++|+.|++++|......+..+
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l------------------ 304 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL------------------ 304 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH------------------
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHH------------------
Confidence 1 1112234555555555555543 34444445555555555543322111111
Q ss_pred CCccccC-CCCCCcEEEccCccCCC-----CCccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCC
Q 045458 696 NVPETLG-QVESLEELHISGTAIRQ-----PPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPP 769 (1170)
Q Consensus 696 ~l~~~l~-~l~~L~~L~L~~~~i~~-----lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~ 769 (1170)
...+. ..++|+.|++++|.++. ++..+..+++|++|++++|....... ..+..
T Consensus 305 --~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~-------------------~~l~~ 363 (461)
T 1z7x_W 305 --CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV-------------------RELCQ 363 (461)
T ss_dssp --HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH-------------------HHHHH
T ss_pred --HHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH-------------------HHHHH
Confidence 11111 12355555555555442 23444455666666666654211000 00000
Q ss_pred CCC-CCCCcCEEeccCCCCCC---CCCcCccCCCCCCCEEECcCCCCccc-----chhh-hcCCCCCEeeccCcc
Q 045458 770 SLS-GLYSLTKLDLSDCDLGE---GFIPNDIGNLRSLKVLCLSNNSFVSL-----PASI-SRLSKLECLNLNGCK 834 (1170)
Q Consensus 770 ~l~-~l~~L~~L~Ls~c~l~~---~~~~~~l~~l~sL~~L~Ls~n~l~~l-----p~~i-~~l~~L~~L~L~~c~ 834 (1170)
.+. ..++|+.|++++|.+.+ ..++..+..+++|++|++++|.+... ...+ ...++|+.|.+.++.
T Consensus 364 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 364 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred HHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccc
Confidence 011 14567778888877742 14566667778888888888877632 1112 123457777666654
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=9.4e-20 Score=216.64 Aligned_cols=244 Identities=23% Similarity=0.251 Sum_probs=192.2
Q ss_pred CcEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCc
Q 045458 565 LSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGT 644 (1170)
Q Consensus 565 L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~ 644 (1170)
...++..+..+..+|..+. ++++.|+|++|......+..+.++++|+.|+|++|......+..+..+++|+.|++++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 4456666677777776554 67778888877766555667788888888888888766666677888888888888888
Q ss_pred CCCccCc-cccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCcc-ccCCCCCCcEEEccCccCCCCCc
Q 045458 645 SITEVPS-SIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPE-TLGQVESLEELHISGTAIRQPPS 722 (1170)
Q Consensus 645 ~l~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~-~l~~l~~L~~L~L~~~~i~~lp~ 722 (1170)
.++.+|. .+..+++|+.|++++|......+..+..+++|+.|++++|..+..++. .+..+++|+.|++++|.++.+|.
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 202 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN 202 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc
Confidence 8887776 578888888888888876655556788889999999998877776665 57788999999999999988874
Q ss_pred cccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCccCCCCCC
Q 045458 723 GIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSL 802 (1170)
Q Consensus 723 ~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL 802 (1170)
+..+++|+.|+|++|.... ..|..+..+++|+.|+|++|.+. +..+..+..+++|
T Consensus 203 -~~~l~~L~~L~Ls~N~l~~-----------------------~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L 257 (440)
T 3zyj_A 203 -LTPLIKLDELDLSGNHLSA-----------------------IRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSL 257 (440)
T ss_dssp -CTTCSSCCEEECTTSCCCE-----------------------ECTTTTTTCTTCCEEECTTCCCC-EECTTSSTTCTTC
T ss_pred -cCCCcccCEEECCCCccCc-----------------------cChhhhccCccCCEEECCCCcee-EEChhhhcCCCCC
Confidence 7788899999999886432 33556788889999999999884 4566778889999
Q ss_pred CEEECcCCCCcccch-hhhcCCCCCEeeccCccC
Q 045458 803 KVLCLSNNSFVSLPA-SISRLSKLECLNLNGCKK 835 (1170)
Q Consensus 803 ~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~ 835 (1170)
+.|+|++|+++.+|. .+..+++|+.|+|++|+.
T Consensus 258 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 258 VEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 999999999998875 457889999999988763
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=217.37 Aligned_cols=263 Identities=18% Similarity=0.153 Sum_probs=196.7
Q ss_pred CCccccccCCCCCCcEEEecCccCCccCc-chhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhh
Q 045458 552 LKKFPKIVGNMECLSKLLLDGTAIGELPL-SIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIV 630 (1170)
Q Consensus 552 ~~~l~~~l~~l~~L~~L~L~~~~i~~l~~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~ 630 (1170)
+..+|..+. ++|++|++++|.+..++. .+..+++|+.|++++|......|..+..+++|++|++++|......+..+
T Consensus 43 l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 120 (353)
T 2z80_A 43 LNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWF 120 (353)
T ss_dssp CSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHH
T ss_pred ccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHh
Confidence 334444333 367777777777766665 56777777777777776555556677888888888888887665555558
Q ss_pred cCCcccCeEeccCcCCCccCc--cccCCCCCCEEeccCCcCCccc-cccCCCCCCCCEEEeeCcCCCCCCccccCCCCCC
Q 045458 631 ESMEDLSELFLDGTSITEVPS--SIELLTGLNVLNLNDCKNLVRI-PDSINGLKSLQSLNLSGCFKLENVPETLGQVESL 707 (1170)
Q Consensus 631 ~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L 707 (1170)
..+++|+.|++++|.+..+|. .+..+++|+.|++++|..+..+ +..+..+++|+.|++++|......|..+..+++|
T Consensus 121 ~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 200 (353)
T 2z80_A 121 KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200 (353)
T ss_dssp TTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred CCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccC
Confidence 888999999999999998887 6888999999999998655555 5678889999999999998777778888999999
Q ss_pred cEEEccCccCCCCCcccc-CCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCC
Q 045458 708 EELHISGTAIRQPPSGIF-HMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCD 786 (1170)
Q Consensus 708 ~~L~L~~~~i~~lp~~l~-~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~ 786 (1170)
++|++++|.+..+|..+. .+++|++|++++|........ ........+.++.++++++.
T Consensus 201 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--------------------~l~~~~~~~~l~~l~L~~~~ 260 (353)
T 2z80_A 201 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS--------------------ELSTGETNSLIKKFTFRNVK 260 (353)
T ss_dssp EEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------------------------CCCCCCEEEEESCB
T ss_pred CeecCCCCccccchhhhhhhcccccEEECCCCcccccccc--------------------ccccccccchhhcccccccc
Confidence 999999999888776544 488999999999875431100 00112345567888888887
Q ss_pred CCCC---CCcCccCCCCCCCEEECcCCCCcccchhh-hcCCCCCEeeccCccCC
Q 045458 787 LGEG---FIPNDIGNLRSLKVLCLSNNSFVSLPASI-SRLSKLECLNLNGCKKL 836 (1170)
Q Consensus 787 l~~~---~~~~~l~~l~sL~~L~Ls~n~l~~lp~~i-~~l~~L~~L~L~~c~~L 836 (1170)
+... .+|..+..+++|+.|++++|+++.+|..+ ..+++|++|+|++|+..
T Consensus 261 l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 261 ITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp CCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 6431 25666788899999999999999888775 78899999999988643
No 58
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=1e-22 Score=252.46 Aligned_cols=412 Identities=16% Similarity=0.065 Sum_probs=281.1
Q ss_pred cccCCceEEEcCCCCC----CCCCCCCCCCceeEEEccCCChHHHhhcCCCCCCCcEEEcCCCCCCCcCC-CCCC-CCC-
Q 045458 421 CLSNKLRLLDWPGYPL----KSLPPNLQLDKTIEFKMLCSRIEELWKGIKSLNMLKVMKVSYSQSLIKIP-DFTG-VPN- 493 (1170)
Q Consensus 421 ~l~~~Lr~L~l~~~~l----~~lp~~~~l~~L~~L~L~~s~i~~L~~~l~~l~~L~~L~Ls~~~~l~~~~-~~~~-l~~- 493 (1170)
.++ +|++|++++++. ..+|..+. ......+......+++|+.|+|+++......+ .+.. +++
T Consensus 71 ~~~-~L~~L~L~~~~~~~~~~~~~~~~~----------~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 139 (592)
T 3ogk_B 71 RFP-NLRSLKLKGKPRAAMFNLIPENWG----------GYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADD 139 (592)
T ss_dssp HCT-TCSEEEEECSCGGGGGTCSCTTSC----------CBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGG
T ss_pred hCC-CCeEEEecCCcchhhccccccccc----------ccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhcccc
Confidence 344 499999988652 22332210 00111222223467889999998875322211 2333 344
Q ss_pred ccEEEeeccCCcc--cccccccCCCCccEEEeeCCCCCCc----cCcccc-CCcccEEEecCCCCC----CccccccCCC
Q 045458 494 LEKLYLEGCTRLR--EIHPSLLLHSKLVILNLTGCTSLAT----LPGKIF-MKSVKKLVLSGCSKL----KKFPKIVGNM 562 (1170)
Q Consensus 494 L~~L~L~~~~~l~--~~~~~i~~l~~L~~L~L~~c~~l~~----lp~~~~-l~~L~~L~L~~~~~~----~~l~~~l~~l 562 (1170)
|++|++++|.... .++.....+++|+.|++++|..... ++.... +++|++|++++|... ..++..+.++
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 9999999886432 2333345789999999999853222 222222 899999999998765 3566677889
Q ss_pred CCCcEEEecCccCCccCcchhcCCCCCEEeccCCCCC---CcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeE
Q 045458 563 ECLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNF---KNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSEL 639 (1170)
Q Consensus 563 ~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l---~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L 639 (1170)
++|++|+++++.+..++..+..+++|+.|+++.+... ...+..+..+++|+.|.++++ ....+|..+..+++|+.|
T Consensus 220 ~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L 298 (592)
T 3ogk_B 220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKL 298 (592)
T ss_dssp TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEE
T ss_pred CCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEE
Confidence 9999999999999999999999999999999864433 344557788999999999985 456788888999999999
Q ss_pred eccCcCCC--ccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeC----------cCCCCC--CccccCCCC
Q 045458 640 FLDGTSIT--EVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSG----------CFKLEN--VPETLGQVE 705 (1170)
Q Consensus 640 ~l~~~~l~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~----------c~~l~~--l~~~l~~l~ 705 (1170)
++++|.+. .++..+..+++|+.|++.++.....++.....+++|++|++++ |..+.. ++.....++
T Consensus 299 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (592)
T 3ogk_B 299 DLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ 378 (592)
T ss_dssp EETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCT
T ss_pred ecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCc
Confidence 99999876 3334578899999999985433333444456689999999994 655542 223344579
Q ss_pred CCcEEEccCccCCC-CCccccC-CCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEecc
Q 045458 706 SLEELHISGTAIRQ-PPSGIFH-MKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLS 783 (1170)
Q Consensus 706 ~L~~L~L~~~~i~~-lp~~l~~-l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls 783 (1170)
+|++|++..+.++. .+..+.. +++|+.|++.+|........ .+....++..+.++++|+.|+++
T Consensus 379 ~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~--------------~p~~~~~~~~~~~~~~L~~L~L~ 444 (592)
T 3ogk_B 379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITD--------------LPLDNGVRSLLIGCKKLRRFAFY 444 (592)
T ss_dssp TCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSS--------------CCCHHHHHHHHHHCTTCCEEEEE
T ss_pred cCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccC--------------chHHHHHHHHHHhCCCCCEEEEe
Confidence 99999998777763 2333443 89999999986531100000 00000122224568899999998
Q ss_pred CCC--CCCCCCcCccCCCCCCCEEECcCCCCc--ccchhhhcCCCCCEeeccCccCCCc--CCC---CCcccceeeccCC
Q 045458 784 DCD--LGEGFIPNDIGNLRSLKVLCLSNNSFV--SLPASISRLSKLECLNLNGCKKLQS--LPP---LPARMRIASVNGC 854 (1170)
Q Consensus 784 ~c~--l~~~~~~~~l~~l~sL~~L~Ls~n~l~--~lp~~i~~l~~L~~L~L~~c~~L~~--lp~---lp~sL~~L~i~~C 854 (1170)
+|. +++..+......+++|+.|+|++|+++ .++..+..+++|+.|+|++|+ +.. ++. -.++|+.|++++|
T Consensus 445 ~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n 523 (592)
T 3ogk_B 445 LRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGY 523 (592)
T ss_dssp CCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESC
T ss_pred cCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCC
Confidence 775 433222222345899999999999987 466677899999999999998 332 222 2468999999999
Q ss_pred cCCccc
Q 045458 855 ASLETL 860 (1170)
Q Consensus 855 ~~L~~l 860 (1170)
. +...
T Consensus 524 ~-it~~ 528 (592)
T 3ogk_B 524 R-ASMT 528 (592)
T ss_dssp B-CCTT
T ss_pred c-CCHH
Confidence 8 5543
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=1.2e-19 Score=216.54 Aligned_cols=243 Identities=26% Similarity=0.242 Sum_probs=177.6
Q ss_pred CcEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCc
Q 045458 565 LSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGT 644 (1170)
Q Consensus 565 L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~ 644 (1170)
...++.++..+..+|..+. ++|+.|+|++|......|..+.++++|+.|+|++|......+..+..+++|+.|++++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 3455556666666665443 56777777777665555666777777777777777666656667777777777777777
Q ss_pred CCCccCcc-ccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCcc-ccCCCCCCcEEEccCccCCCCCc
Q 045458 645 SITEVPSS-IELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPE-TLGQVESLEELHISGTAIRQPPS 722 (1170)
Q Consensus 645 ~l~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~-~l~~l~~L~~L~L~~~~i~~lp~ 722 (1170)
.+..+|.. +..+++|+.|++++|......+..+..+++|+.|++++|..+..++. .+..+++|+.|++++|.++.+|
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~- 212 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP- 212 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-
Confidence 77777654 67778888888888775544445677788888888888777776654 4677888888888888888776
Q ss_pred cccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCccCCCCCC
Q 045458 723 GIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSL 802 (1170)
Q Consensus 723 ~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL 802 (1170)
.+..+++|+.|+|++|.... ..|..+..+++|+.|+|++|.+. +..+..+..+++|
T Consensus 213 ~~~~l~~L~~L~Ls~N~l~~-----------------------~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L 268 (452)
T 3zyi_A 213 NLTPLVGLEELEMSGNHFPE-----------------------IRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASL 268 (452)
T ss_dssp CCTTCTTCCEEECTTSCCSE-----------------------ECGGGGTTCTTCCEEECTTSCCC-EECTTTTTTCTTC
T ss_pred cccccccccEEECcCCcCcc-----------------------cCcccccCccCCCEEEeCCCcCc-eECHHHhcCCCCC
Confidence 46778888888888876432 23445777888888888888874 4556778888888
Q ss_pred CEEECcCCCCcccch-hhhcCCCCCEeeccCcc
Q 045458 803 KVLCLSNNSFVSLPA-SISRLSKLECLNLNGCK 834 (1170)
Q Consensus 803 ~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~ 834 (1170)
+.|+|++|+++.+|. .+..+++|+.|+|++|+
T Consensus 269 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 269 VELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 888888888888774 45778888888888875
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=1.2e-18 Score=213.09 Aligned_cols=257 Identities=24% Similarity=0.283 Sum_probs=140.6
Q ss_pred CccEEEeeccCCcccccccccCCCCccEEEeeCCCCCCccCccccCCcccEEEecCCCCCCccccccCCCCCCcEEEecC
Q 045458 493 NLEKLYLEGCTRLREIHPSLLLHSKLVILNLTGCTSLATLPGKIFMKSVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDG 572 (1170)
Q Consensus 493 ~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~ 572 (1170)
+++.|+++++ .+..+|..+. ++|+.|++++|. ++.+|. .+++|++|+|++|. +..+|. .+++|++|++++
T Consensus 41 ~l~~L~ls~n-~L~~lp~~l~--~~L~~L~L~~N~-l~~lp~--~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 41 GNAVLNVGES-GLTTLPDCLP--AHITTLVIPDNN-LTSLPA--LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp CCCEEECCSS-CCSCCCSCCC--TTCSEEEECSCC-CSCCCC--CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECS
T ss_pred CCcEEEecCC-CcCccChhhC--CCCcEEEecCCC-CCCCCC--cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcC
Confidence 4677777765 3456666554 677777777753 445555 45667777776665 334444 556666666666
Q ss_pred ccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCCccCcc
Q 045458 573 TAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSITEVPSS 652 (1170)
Q Consensus 573 ~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~ 652 (1170)
|.+..+|. .+++|+.|++++|. +..+|.. +++|++|++++|... .+|. .+.+|+.|++++|.++.+|
T Consensus 111 N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~l~~l~-- 177 (622)
T 3g06_A 111 NPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLA-SLPA---LPSELCKLWAYNNQLTSLP-- 177 (622)
T ss_dssp CCCCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSCCC--
T ss_pred CcCCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcCC-CcCC---ccCCCCEEECCCCCCCCCc--
Confidence 66666665 45566666666654 2234432 245555555554322 2221 2234444444444444444
Q ss_pred ccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCCCccccCCCCCcE
Q 045458 653 IELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQPPSGIFHMKNLKA 732 (1170)
Q Consensus 653 i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~ 732 (1170)
.. +++|+.|++++|.. ..+|.. +++|+.|++++|.++.+|.. +++|+.
T Consensus 178 -~~------------------------~~~L~~L~Ls~N~l-~~l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~ 225 (622)
T 3g06_A 178 -ML------------------------PSGLQELSVSDNQL-ASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKE 225 (622)
T ss_dssp -CC------------------------CTTCCEEECCSSCC-SCCCCC---CTTCCEEECCSSCCSSCCCC---CTTCCE
T ss_pred -cc------------------------CCCCcEEECCCCCC-CCCCCc---cchhhEEECcCCcccccCCC---CCCCCE
Confidence 22 34555555555432 223321 24556666666666555532 355666
Q ss_pred EEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCC
Q 045458 733 LYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSF 812 (1170)
Q Consensus 733 L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l 812 (1170)
|++++|.... +| ..+++|+.|+|++|++.. +|. .+++|+.|+|++|++
T Consensus 226 L~Ls~N~L~~------------------------lp---~~l~~L~~L~Ls~N~L~~--lp~---~~~~L~~L~Ls~N~L 273 (622)
T 3g06_A 226 LIVSGNRLTS------------------------LP---VLPSELKELMVSGNRLTS--LPM---LPSGLLSLSVYRNQL 273 (622)
T ss_dssp EECCSSCCSC------------------------CC---CCCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCC
T ss_pred EEccCCccCc------------------------CC---CCCCcCcEEECCCCCCCc--CCc---ccccCcEEeCCCCCC
Confidence 6666654321 11 233556666666666642 443 456666666766666
Q ss_pred cccchhhhcCCCCCEeeccCccCC
Q 045458 813 VSLPASISRLSKLECLNLNGCKKL 836 (1170)
Q Consensus 813 ~~lp~~i~~l~~L~~L~L~~c~~L 836 (1170)
+.+|..+..+++|+.|+|++|+..
T Consensus 274 ~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 274 TRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CSCCGGGGGSCTTCEEECCSCCCC
T ss_pred CcCCHHHhhccccCEEEecCCCCC
Confidence 666666666666666766666543
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.82 E-value=1.4e-19 Score=204.01 Aligned_cols=240 Identities=21% Similarity=0.222 Sum_probs=143.5
Q ss_pred EEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCcc-ccCCCCcccEEEeeCCCCCC--CcchhhcCCcccCeEeccC
Q 045458 567 KLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPV-TISSLKCLRSLVLSGCSKLK--KFPEIVESMEDLSELFLDG 643 (1170)
Q Consensus 567 ~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~L~~~~~~~--~~p~~~~~l~~L~~L~l~~ 643 (1170)
.++.+++.+..+|..+. ++|+.|++++|... .+|. .+..+++|+.|++++|.... ..+..+..+++|+.|++++
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 45566666666665432 56777777766543 3433 35677777777777765442 2255666677888888888
Q ss_pred cCCCccCccccCCCCCCEEeccCCcCCcccc-ccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCC--C
Q 045458 644 TSITEVPSSIELLTGLNVLNLNDCKNLVRIP-DSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQ--P 720 (1170)
Q Consensus 644 ~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~--l 720 (1170)
|.+..+|..+..+++|+.|++++|......+ ..+..+++|+.|++++|......+..+..+++|++|++++|.++. .
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 167 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence 8888777777788888888888776544333 456677777777777776555556666666777777777776654 4
Q ss_pred CccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCccCCCC
Q 045458 721 PSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGNLR 800 (1170)
Q Consensus 721 p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~ 800 (1170)
|..+..+++|++|++++|.... ..|..+..+++|+.|++++|.+.. ..+..+..++
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~-----------------------~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~ 223 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQ-----------------------LSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLN 223 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCE-----------------------ECTTTTTTCTTCCEEECTTSCCSB-CCSGGGTTCT
T ss_pred hhHHhhCcCCCEEECCCCCcCC-----------------------cCHHHhcCCCCCCEEECCCCccCc-cChhhccCcc
Confidence 5555556666666665554221 123334455555555555555532 2222445555
Q ss_pred CCCEEECcCCCCccc-chhhhcCC-CCCEeeccCc
Q 045458 801 SLKVLCLSNNSFVSL-PASISRLS-KLECLNLNGC 833 (1170)
Q Consensus 801 sL~~L~Ls~n~l~~l-p~~i~~l~-~L~~L~L~~c 833 (1170)
+|+.|++++|.+... |..+..++ +|+.|+|++|
T Consensus 224 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp TCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred cCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence 555555555555532 23344442 4555555444
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=4.4e-19 Score=216.97 Aligned_cols=258 Identities=23% Similarity=0.250 Sum_probs=160.8
Q ss_pred CceEEEcCCCCCCCCCCCCCCCceeEEEccCCChHHHhhcCCCCCCCcEEEcCCCCCCCcCCCCCCCCCccEEEeeccCC
Q 045458 425 KLRLLDWPGYPLKSLPPNLQLDKTIEFKMLCSRIEELWKGIKSLNMLKVMKVSYSQSLIKIPDFTGVPNLEKLYLEGCTR 504 (1170)
Q Consensus 425 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~s~i~~L~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~ 504 (1170)
.+++|+++++.++++|..+. .+|++|++++|.++.+|. .+++|++|+|++|. +..+|. .+++|++|++++| .
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N-~ 112 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV--LPPGLLELSIFSN-P 112 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC--CCTTCCEEEECSC-C
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC--CCCCCCEEECcCC-c
Confidence 34455555555555554443 455555555555555444 34555555555554 333443 4555666666554 2
Q ss_pred cccccccccCCCCccEEEeeCCCCCCccCccccCCcccEEEecCCCCCCccccccCCCCCCcEEEecCccCCccCcchhc
Q 045458 505 LREIHPSLLLHSKLVILNLTGCTSLATLPGKIFMKSVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTAIGELPLSIEL 584 (1170)
Q Consensus 505 l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~ 584 (1170)
+..+|. .+++|+.|++++|. +..+|.. +++|++|++++|.. ..+|. .+.+|+.|++++|.+..+| ..
T Consensus 113 l~~l~~---~l~~L~~L~L~~N~-l~~lp~~--l~~L~~L~Ls~N~l-~~l~~---~~~~L~~L~L~~N~l~~l~---~~ 179 (622)
T 3g06_A 113 LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL--PPGLQELSVSDNQL-ASLPA---LPSELCKLWAYNNQLTSLP---ML 179 (622)
T ss_dssp CCCCCC---CCTTCCEEECCSSC-CSCCCCC--CTTCCEEECCSSCC-SCCCC---CCTTCCEEECCSSCCSCCC---CC
T ss_pred CCCCCC---CCCCcCEEECCCCC-CCcCCCC--CCCCCEEECcCCcC-CCcCC---ccCCCCEEECCCCCCCCCc---cc
Confidence 333433 44556666666543 4444442 36667777766643 23443 2356777777777777777 44
Q ss_pred CCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCCccCccccCCCCCCEEec
Q 045458 585 LSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSITEVPSSIELLTGLNVLNL 664 (1170)
Q Consensus 585 l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L 664 (1170)
+++|+.|++++|... .+|. .+++|+.|++++|... .+|. .+++|+.|++++|.++.+| ..+++|+.|++
T Consensus 180 ~~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~L 248 (622)
T 3g06_A 180 PSGLQELSVSDNQLA-SLPT---LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTSLP---VLPSELKELMV 248 (622)
T ss_dssp CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEEC
T ss_pred CCCCcEEECCCCCCC-CCCC---ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCcCC---CCCCcCcEEEC
Confidence 677777777777533 3443 2467777777776543 3443 2467888888888888877 45678888888
Q ss_pred cCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCC
Q 045458 665 NDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQ 719 (1170)
Q Consensus 665 ~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~ 719 (1170)
++|. +..+|. .+++|+.|++++|.. ..+|..+..+++|+.|++++|.++.
T Consensus 249 s~N~-L~~lp~---~~~~L~~L~Ls~N~L-~~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 249 SGNR-LTSLPM---LPSGLLSLSVYRNQL-TRLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp CSSC-CSCCCC---CCTTCCEEECCSSCC-CSCCGGGGGSCTTCEEECCSCCCCH
T ss_pred CCCC-CCcCCc---ccccCcEEeCCCCCC-CcCCHHHhhccccCEEEecCCCCCC
Confidence 8875 445665 578888999988854 4778888888999999999988874
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=4.1e-21 Score=217.70 Aligned_cols=240 Identities=20% Similarity=0.181 Sum_probs=135.6
Q ss_pred CCCcEEEecCccCCccC-cchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEec
Q 045458 563 ECLSKLLLDGTAIGELP-LSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFL 641 (1170)
Q Consensus 563 ~~L~~L~L~~~~i~~l~-~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l 641 (1170)
++|++|++++|.+..++ ..+..+++|+.|++++|......+ +..+++|++|++++|... .+ ...++|+.|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~-~l----~~~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-EL----LVGPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE-EE----EECTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc-cc----cCCCCcCEEEC
Confidence 33444444444443332 233444444444444443222111 444444444444444321 11 12245556666
Q ss_pred cCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCcccc-CCCCCCcEEEccCccCCCC
Q 045458 642 DGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETL-GQVESLEELHISGTAIRQP 720 (1170)
Q Consensus 642 ~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l-~~l~~L~~L~L~~~~i~~l 720 (1170)
++|.+..++.. .+++|+.|++++|......+..+..+++|+.|++++|......+..+ ..+++|+.|++++|.++.+
T Consensus 107 ~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 184 (317)
T 3o53_A 107 ANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (317)
T ss_dssp CSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc
Confidence 66665554432 35566666666666555555556666667777776665444334433 3566777777777776665
Q ss_pred CccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCccCCCC
Q 045458 721 PSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGNLR 800 (1170)
Q Consensus 721 p~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~ 800 (1170)
+... .+++|++|++++|... .+|+.+..+++|+.|++++|.+.. +|..+..++
T Consensus 185 ~~~~-~l~~L~~L~Ls~N~l~------------------------~l~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~l~ 237 (317)
T 3o53_A 185 KGQV-VFAKLKTLDLSSNKLA------------------------FMGPEFQSAAGVTWISLRNNKLVL--IEKALRFSQ 237 (317)
T ss_dssp ECCC-CCTTCCEEECCSSCCC------------------------EECGGGGGGTTCSEEECTTSCCCE--ECTTCCCCT
T ss_pred cccc-ccccCCEEECCCCcCC------------------------cchhhhcccCcccEEECcCCcccc--hhhHhhcCC
Confidence 4332 3677777777776533 233335566777777777777753 666777777
Q ss_pred CCCEEECcCCCCc--ccchhhhcCCCCCEeeccCccCCCc
Q 045458 801 SLKVLCLSNNSFV--SLPASISRLSKLECLNLNGCKKLQS 838 (1170)
Q Consensus 801 sL~~L~Ls~n~l~--~lp~~i~~l~~L~~L~L~~c~~L~~ 838 (1170)
+|+.|++++|.+. .+|..+..+++|+.|++.+|+.++.
T Consensus 238 ~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp TCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 8888888888777 5667777777777777776665554
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=2.2e-19 Score=200.18 Aligned_cols=220 Identities=22% Similarity=0.268 Sum_probs=102.5
Q ss_pred cEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcC
Q 045458 566 SKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTS 645 (1170)
Q Consensus 566 ~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 645 (1170)
++++.+++.+..+|..+ .++|+.|++++|......+..+..+++|++|++++|......|..+..+++|+.|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 34555555555555432 3455566665555433333345555555555555544333334444444444444444443
Q ss_pred -CCcc-CccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCCCcc
Q 045458 646 -ITEV-PSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQPPSG 723 (1170)
Q Consensus 646 -l~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~lp~~ 723 (1170)
+..+ |..+..+++|+.|++++|......|..+..+++|++|++++|......+..++.+++|+.|++++|.++.++..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 171 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence 3333 33344444444444444443333333344444444444444433322223344444444444444444433321
Q ss_pred ccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCccCCCCCCC
Q 045458 724 IFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLK 803 (1170)
Q Consensus 724 l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~ 803 (1170)
.+..+++|+.|++++|.+. +..|..+..+++|+
T Consensus 172 ----------------------------------------------~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~ 204 (285)
T 1ozn_A 172 ----------------------------------------------AFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLM 204 (285)
T ss_dssp ----------------------------------------------TTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCC
T ss_pred ----------------------------------------------HhcCccccCEEECCCCccc-ccCHhHccCccccc
Confidence 2344455555555555542 23344455555555
Q ss_pred EEECcCCCCcccch-hhhcCCCCCEeeccCcc
Q 045458 804 VLCLSNNSFVSLPA-SISRLSKLECLNLNGCK 834 (1170)
Q Consensus 804 ~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~ 834 (1170)
.|++++|+++.+|. .+..+++|+.|++++|+
T Consensus 205 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp EEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred EeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 55555555555442 34555555555555554
No 65
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=207.60 Aligned_cols=270 Identities=16% Similarity=0.149 Sum_probs=155.3
Q ss_pred cEEeecCcccCCchhcccCCceEEEcCCCCCCCCCC-CC-CCCceeEEEccCCChHHHh-hcCCCCCCCcEEEcCCCCCC
Q 045458 406 RLLGICNLKLPEGLECLSNKLRLLDWPGYPLKSLPP-NL-QLDKTIEFKMLCSRIEELW-KGIKSLNMLKVMKVSYSQSL 482 (1170)
Q Consensus 406 r~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~s~i~~L~-~~l~~l~~L~~L~Ls~~~~l 482 (1170)
...+.+++.+..-+..++.+|++|+++++.++.+|. .+ .+.+|++|++++|.+..++ ..+..+++|++|++++|...
T Consensus 34 ~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 34 GICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp SEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred eEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 344555555444444445567777777777777666 33 6677777777777766653 44666777777777776543
Q ss_pred CcCCC-CCCCCCccEEEeeccCCcccccc--cccCCCCccEEEeeCCCCCCccCc-ccc-CCcccEEEecCCCCCCcccc
Q 045458 483 IKIPD-FTGVPNLEKLYLEGCTRLREIHP--SLLLHSKLVILNLTGCTSLATLPG-KIF-MKSVKKLVLSGCSKLKKFPK 557 (1170)
Q Consensus 483 ~~~~~-~~~l~~L~~L~L~~~~~l~~~~~--~i~~l~~L~~L~L~~c~~l~~lp~-~~~-l~~L~~L~L~~~~~~~~l~~ 557 (1170)
...+. +.++++|++|++++|. +..++. .+..+++|++|++++|..+..++. .+. +++|++|++++|......|.
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred cCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence 32222 6667777777777653 334444 566667777777776655555432 222 66677777776665555566
Q ss_pred ccCCCCCCcEEEecCccCCccCcch-hcCCCCCEEeccCCCCCCcCcccc---CCCCcccEEEeeCCCCCCCcchhhcCC
Q 045458 558 IVGNMECLSKLLLDGTAIGELPLSI-ELLSKLVSLDLNNCKNFKNLPVTI---SSLKCLRSLVLSGCSKLKKFPEIVESM 633 (1170)
Q Consensus 558 ~l~~l~~L~~L~L~~~~i~~l~~~i-~~l~~L~~L~L~~~~~l~~lp~~l---~~l~~L~~L~L~~~~~~~~~p~~~~~l 633 (1170)
.++++++|++|++++|.+..+|..+ ..+++|+.|++++|......+..+ .....++.+++.++...
T Consensus 193 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~---------- 262 (353)
T 2z80_A 193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT---------- 262 (353)
T ss_dssp TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCC----------
T ss_pred HHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccccc----------
Confidence 6666667777777766666665543 346666666666665433222111 12333444444443221
Q ss_pred cccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCcccccc-CCCCCCCCEEEeeCcCCCCC
Q 045458 634 EDLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDS-INGLKSLQSLNLSGCFKLEN 696 (1170)
Q Consensus 634 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~L~~c~~l~~ 696 (1170)
++.+..+|..+..+++|+.|++++|... .+|.. +..+++|+.|++++|+....
T Consensus 263 ---------~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 263 ---------DESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp ---------HHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ---------CcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 2222245556666666666666666543 45544 35677777777777655443
No 66
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.81 E-value=3.6e-22 Score=247.76 Aligned_cols=62 Identities=18% Similarity=0.214 Sum_probs=41.7
Q ss_pred CCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCcc--cchhhhcCCCCCEeeccCccC
Q 045458 774 LYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVS--LPASISRLSKLECLNLNGCKK 835 (1170)
Q Consensus 774 l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~--lp~~i~~l~~L~~L~L~~c~~ 835 (1170)
+++|+.|+|++|.+++..+......+++|+.|+|++|.++. ++..+..+++|+.|++++|+.
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 56788888888876433232223567888888888887752 233445678888888888875
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=1.6e-19 Score=201.26 Aligned_cols=221 Identities=19% Similarity=0.194 Sum_probs=131.7
Q ss_pred ceEEEcCCCCCCCCCCCCCCCceeEEEccCCChHHHh-hcCCCCCCCcEEEcCCCCCCCcCC-CCCCCCCccEEEeeccC
Q 045458 426 LRLLDWPGYPLKSLPPNLQLDKTIEFKMLCSRIEELW-KGIKSLNMLKVMKVSYSQSLIKIP-DFTGVPNLEKLYLEGCT 503 (1170)
Q Consensus 426 Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~s~i~~L~-~~l~~l~~L~~L~Ls~~~~l~~~~-~~~~l~~L~~L~L~~~~ 503 (1170)
-+++++++..++.+|..+ +.+|++|+++++.+..++ ..+..+++|++|++++|......| .|..+++|++|++++|.
T Consensus 13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp SCEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred CeEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 367777777888887655 457777777777777765 346777777777777776444333 36777777777777765
Q ss_pred Ccccc-cccccCCCCccEEEeeCCCCCCccCcccc-CCcccEEEecCCCCCCccccccCCCCCCcEEEecCccCCccCcc
Q 045458 504 RLREI-HPSLLLHSKLVILNLTGCTSLATLPGKIF-MKSVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTAIGELPLS 581 (1170)
Q Consensus 504 ~l~~~-~~~i~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~ 581 (1170)
.+..+ +..+..+++|++|++++|......+..+. +++|++|++++|......+..++++++|++|++++|.+..++..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 171 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence 44444 45566666666666666543333333333 56666666666554444444455666666666666666555542
Q ss_pred -hhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCC
Q 045458 582 -IELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSIT 647 (1170)
Q Consensus 582 -i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~ 647 (1170)
+..+++|+.|++++|......|..+..+++|+.|++++|......+..+..+++|+.|++++|.+.
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 555556666666655544444555555555555555555444444444555555555555555443
No 68
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=2.1e-18 Score=204.97 Aligned_cols=201 Identities=21% Similarity=0.216 Sum_probs=155.4
Q ss_pred CCcccEEEecCCCCCCccccccCCCCCCcEEEecCccCCccCc-chhcCCCCCEEeccCCCCCCcCccccCCCCcccEEE
Q 045458 538 MKSVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTAIGELPL-SIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLV 616 (1170)
Q Consensus 538 l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ 616 (1170)
+++|++|+|++|......+..+.++++|++|++++|.+..++. .+..+++|+.|++++|......+..+..+++|+.|+
T Consensus 87 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 166 (440)
T 3zyj_A 87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD 166 (440)
T ss_dssp CSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeC
Confidence 5555555555555444444566667777777777777766665 466777777777777765544445677788888888
Q ss_pred eeCCCCCCCcch-hhcCCcccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCC
Q 045458 617 LSGCSKLKKFPE-IVESMEDLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLE 695 (1170)
Q Consensus 617 L~~~~~~~~~p~-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~ 695 (1170)
+++|..+..++. .+..+++|+.|++++|.+..+|. +..+++|+.|++++|......|..+..+++|+.|++++|....
T Consensus 167 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 245 (440)
T 3zyj_A 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV 245 (440)
T ss_dssp CCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred CCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE
Confidence 887776666554 57788888888888888888874 7888999999999998777778889999999999999997777
Q ss_pred CCccccCCCCCCcEEEccCccCCCCCcc-ccCCCCCcEEEecCCC
Q 045458 696 NVPETLGQVESLEELHISGTAIRQPPSG-IFHMKNLKALYFRGCK 739 (1170)
Q Consensus 696 ~l~~~l~~l~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~L~~c~ 739 (1170)
..+..+..+++|+.|++++|.++.+|.. +..+++|+.|+|++|+
T Consensus 246 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 246 IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 6777888999999999999999988765 5679999999999987
No 69
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=8.3e-20 Score=206.01 Aligned_cols=241 Identities=19% Similarity=0.216 Sum_probs=162.5
Q ss_pred EEEcCCCCCCCCCCCCCCCceeEEEccCCChHHHhhc-CCCCCCCcEEEcCCCCCCCc---CCCCCCCCCccEEEeeccC
Q 045458 428 LLDWPGYPLKSLPPNLQLDKTIEFKMLCSRIEELWKG-IKSLNMLKVMKVSYSQSLIK---IPDFTGVPNLEKLYLEGCT 503 (1170)
Q Consensus 428 ~L~l~~~~l~~lp~~~~l~~L~~L~L~~s~i~~L~~~-l~~l~~L~~L~Ls~~~~l~~---~~~~~~l~~L~~L~L~~~~ 503 (1170)
.++++++.++++|..+ +.+|++|+++++.+..+|.. +..+++|+.|++++|..... .+.+..+++|++|++++|.
T Consensus 11 ~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp EEECCSSCCSSCCSCC-CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred EEEcCCCCcccCCCCC-CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 4555666666666544 24566666666666666544 46666777777766653221 1224456677777777653
Q ss_pred CcccccccccCCCCccEEEeeCCCCCCccCc--ccc-CCcccEEEecCCCCCCccccccCCCCCCcEEEecCccCCc--c
Q 045458 504 RLREIHPSLLLHSKLVILNLTGCTSLATLPG--KIF-MKSVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTAIGE--L 578 (1170)
Q Consensus 504 ~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~--~~~-l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~--l 578 (1170)
+..++..+..+++|++|++++|. +..++. .+. +++|++|++++|......+..+..+++|++|++++|.+.. +
T Consensus 90 -i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 167 (306)
T 2z66_A 90 -VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167 (306)
T ss_dssp -EEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred -cccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence 44566667777777777777643 233322 222 7777788887777666666777778888888888887764 6
Q ss_pred CcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCCc-cCccccCCC
Q 045458 579 PLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSITE-VPSSIELLT 657 (1170)
Q Consensus 579 ~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~-lp~~i~~l~ 657 (1170)
|..+..+++|+.|++++|......|..+..+++|+.|++++|......+..+..+++|+.|++++|.+.. .|..+..++
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 247 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 247 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCC
T ss_pred hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhh
Confidence 7777888888888888887666667777788888888888877666656667778888888888888875 355666664
Q ss_pred -CCCEEeccCCcCCc
Q 045458 658 -GLNVLNLNDCKNLV 671 (1170)
Q Consensus 658 -~L~~L~L~~~~~l~ 671 (1170)
+|+.|++++|....
T Consensus 248 ~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 248 SSLAFLNLTQNDFAC 262 (306)
T ss_dssp TTCCEEECTTCCEEC
T ss_pred ccCCEEEccCCCeec
Confidence 88888888877543
No 70
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=2.9e-18 Score=204.50 Aligned_cols=243 Identities=21% Similarity=0.171 Sum_probs=164.9
Q ss_pred CcEEEcCCCCCCCcCCCCCCCCCccEEEeeccCCcccccccccCCCCccEEEeeCCCCCCccCccccCCcccEEEecCCC
Q 045458 471 LKVMKVSYSQSLIKIPDFTGVPNLEKLYLEGCTRLREIHPSLLLHSKLVILNLTGCTSLATLPGKIFMKSVKKLVLSGCS 550 (1170)
Q Consensus 471 L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~ 550 (1170)
...++.++.. +..+|. .-.++|++|+|++|......+..+..+++|+.|++++ |.
T Consensus 56 ~~~v~c~~~~-l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-----------------------n~ 110 (452)
T 3zyi_A 56 FSKVVCTRRG-LSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR-----------------------NS 110 (452)
T ss_dssp SCEEECCSSC-CSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCS-----------------------SC
T ss_pred CcEEEECCCC-cCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCC-----------------------Cc
Confidence 3455555443 334443 1124666666666543333344455555555555555 43
Q ss_pred CCCccccccCCCCCCcEEEecCccCCccCcc-hhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcch-
Q 045458 551 KLKKFPKIVGNMECLSKLLLDGTAIGELPLS-IELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPE- 628 (1170)
Q Consensus 551 ~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~- 628 (1170)
.....+..+.++++|++|++++|.+..++.. +..+++|+.|++++|......+..+..+++|+.|++++|..+..++.
T Consensus 111 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~ 190 (452)
T 3zyi_A 111 IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG 190 (452)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT
T ss_pred cCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh
Confidence 3333344555556666666666666555543 45566666666666654433334566677777777777666665554
Q ss_pred hhcCCcccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCc
Q 045458 629 IVESMEDLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLE 708 (1170)
Q Consensus 629 ~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~ 708 (1170)
.+..+++|+.|++++|.+..+|. +..+++|+.|++++|......|..+..+++|+.|++++|......+..+..+++|+
T Consensus 191 ~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 269 (452)
T 3zyi_A 191 AFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269 (452)
T ss_dssp TTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hccCCCCCCEEECCCCccccccc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCC
Confidence 46777888888888888888764 77888999999999888777788889999999999999877766777888899999
Q ss_pred EEEccCccCCCCCcc-ccCCCCCcEEEecCCC
Q 045458 709 ELHISGTAIRQPPSG-IFHMKNLKALYFRGCK 739 (1170)
Q Consensus 709 ~L~L~~~~i~~lp~~-l~~l~~L~~L~L~~c~ 739 (1170)
.|++++|.++.+|.. +..+++|+.|+|++|+
T Consensus 270 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp EEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 999999999988754 5678999999999886
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.79 E-value=1.8e-20 Score=211.85 Aligned_cols=241 Identities=22% Similarity=0.213 Sum_probs=142.8
Q ss_pred CCcccEEEecCCCCCCccccccCCCCCCcEEEecCccCCc--cCcchh-------cCCCCCEEeccCCCCCCcCcccc--
Q 045458 538 MKSVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTAIGE--LPLSIE-------LLSKLVSLDLNNCKNFKNLPVTI-- 606 (1170)
Q Consensus 538 l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~--l~~~i~-------~l~~L~~L~L~~~~~l~~lp~~l-- 606 (1170)
.++|+.|++++|.. .+|..+... |+.|+++++.+.. +|..+. .+++|++|++++|.....+|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 45566666666655 555544333 5666666665532 333333 45566666666655554555443
Q ss_pred CCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCCccCccccCC-----CCCCEEeccCCcCCccccccCCCCC
Q 045458 607 SSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSITEVPSSIELL-----TGLNVLNLNDCKNLVRIPDSINGLK 681 (1170)
Q Consensus 607 ~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l-----~~L~~L~L~~~~~l~~lp~~l~~l~ 681 (1170)
..+++|++|++++| .+...|..+..+ ++|+.|++++|......|..+..++
T Consensus 118 ~~l~~L~~L~Ls~N------------------------~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 118 ATGPDLNILNLRNV------------------------SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp CCSCCCSEEEEESC------------------------BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred hcCCCccEEEccCC------------------------CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 45555555555554 444444444433 5555555555555444445555666
Q ss_pred CCCEEEeeCcCCCCC--Ccccc--CCCCCCcEEEccCccCCCCCc----cccCCCCCcEEEecCCCCCCCCCCcccCccc
Q 045458 682 SLQSLNLSGCFKLEN--VPETL--GQVESLEELHISGTAIRQPPS----GIFHMKNLKALYFRGCKGSPSSTSWSRHFPF 753 (1170)
Q Consensus 682 ~L~~L~L~~c~~l~~--l~~~l--~~l~~L~~L~L~~~~i~~lp~----~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l 753 (1170)
+|++|++++|..... ++..+ +.+++|++|++++|.++.++. .+..+++|++|++++|.....
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~---------- 243 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA---------- 243 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS----------
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc----------
Confidence 666666666654332 22222 556677777777776664332 223567777777777764321
Q ss_pred ccccccCCCCcccCC-CCCCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCcccchhhhcCCCCCEeeccC
Q 045458 754 NLIKRSLDPVAFSFP-PSLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVSLPASISRLSKLECLNLNG 832 (1170)
Q Consensus 754 ~~~~~~~~~~~~~lp-~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~ 832 (1170)
.| ..+..+++|+.|++++|.+. .+|..+. ++|+.|+|++|+++.+|. +..+++|+.|++++
T Consensus 244 -------------~~~~~~~~l~~L~~L~Ls~N~l~--~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 244 -------------AGAPSCDWPSQLNSLNLSFTGLK--QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKG 305 (312)
T ss_dssp -------------CCCSCCCCCTTCCEEECTTSCCS--SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTT
T ss_pred -------------cchhhhhhcCCCCEEECCCCccC--hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccC
Confidence 11 22445678888888888875 4666665 788888888888888876 78888888888888
Q ss_pred cc
Q 045458 833 CK 834 (1170)
Q Consensus 833 c~ 834 (1170)
|+
T Consensus 306 N~ 307 (312)
T 1wwl_A 306 NP 307 (312)
T ss_dssp CT
T ss_pred CC
Confidence 65
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=2.9e-21 Score=239.55 Aligned_cols=393 Identities=15% Similarity=0.134 Sum_probs=227.7
Q ss_pred CCCceeEEEccCCC-hHHH---------------hhcCCCCCCCcEEEcCCCCCCCcCC-CCC-CCCCccEEEeeccCCc
Q 045458 444 QLDKTIEFKMLCSR-IEEL---------------WKGIKSLNMLKVMKVSYSQSLIKIP-DFT-GVPNLEKLYLEGCTRL 505 (1170)
Q Consensus 444 ~l~~L~~L~L~~s~-i~~L---------------~~~l~~l~~L~~L~Ls~~~~l~~~~-~~~-~l~~L~~L~L~~~~~l 505 (1170)
.+.+|+.|+++++. +..+ ..-...+++|+.|+++++......+ .+. .+++|++|++++|..+
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 45667777777654 1111 1112356677777777765322211 132 4677777777777544
Q ss_pred cc--ccccccCCCCccEEEeeCCCCCC----ccCccc-cCCcccEEEecCCC-CC--CccccccCCCCCCcEEEecCc-c
Q 045458 506 RE--IHPSLLLHSKLVILNLTGCTSLA----TLPGKI-FMKSVKKLVLSGCS-KL--KKFPKIVGNMECLSKLLLDGT-A 574 (1170)
Q Consensus 506 ~~--~~~~i~~l~~L~~L~L~~c~~l~----~lp~~~-~l~~L~~L~L~~~~-~~--~~l~~~l~~l~~L~~L~L~~~-~ 574 (1170)
.. ++.....+++|++|++++|.... .++... .+++|+.|++++|. .. ..++..+.++++|++|+++++ .
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 223 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence 43 33444467777777777765211 122222 25677777777765 11 112233344577777777766 4
Q ss_pred CCccCcchhcCCCCCEEeccCCCC------CCcCccccCCCCcccEEE-eeCCCCCCCcchhhcCCcccCeEeccCcCCC
Q 045458 575 IGELPLSIELLSKLVSLDLNNCKN------FKNLPVTISSLKCLRSLV-LSGCSKLKKFPEIVESMEDLSELFLDGTSIT 647 (1170)
Q Consensus 575 i~~l~~~i~~l~~L~~L~L~~~~~------l~~lp~~l~~l~~L~~L~-L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~ 647 (1170)
+..++..+..+++|+.|++..+.. +..++..+.++++|+.|. +.+. ....++..+..+++|+.|++++|.+.
T Consensus 224 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~l~ 302 (594)
T 2p1m_B 224 LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA-VPAYLPAVYSVCSRLTTLNLSYATVQ 302 (594)
T ss_dssp HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC-CGGGGGGGHHHHTTCCEEECTTCCCC
T ss_pred HHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc-chhhHHHHHHhhCCCCEEEccCCCCC
Confidence 455666666777777777665532 122333556667777763 3221 22345555566788888888888765
Q ss_pred c--cCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCc--------CCCCC--CccccCCCCCCcEEEccCc
Q 045458 648 E--VPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGC--------FKLEN--VPETLGQVESLEELHISGT 715 (1170)
Q Consensus 648 ~--lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c--------~~l~~--l~~~l~~l~~L~~L~L~~~ 715 (1170)
. ++..+..+++|+.|++.+|.....++.....+++|++|++.+| ..+.. +......+++|+.|.+..+
T Consensus 303 ~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~ 382 (594)
T 2p1m_B 303 SYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCR 382 (594)
T ss_dssp HHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEES
T ss_pred HHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcC
Confidence 2 3344567888888888877221222222334778888888553 22211 1111123678888877777
Q ss_pred cCCCC-Cccc-cCCCCCcEEEec-----CCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCC
Q 045458 716 AIRQP-PSGI-FHMKNLKALYFR-----GCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLG 788 (1170)
Q Consensus 716 ~i~~l-p~~l-~~l~~L~~L~L~-----~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~ 788 (1170)
.++.. +..+ ..+++|+.|++. +|...... +....++..+..+++|+.|+|++ +++
T Consensus 383 ~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~-----------------~~~~~~~~l~~~~~~L~~L~L~~-~l~ 444 (594)
T 2p1m_B 383 QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE-----------------PLDIGFGAIVEHCKDLRRLSLSG-LLT 444 (594)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC-----------------CTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred CcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC-----------------chhhHHHHHHhhCCCccEEeecC-ccc
Confidence 76532 1222 257888888888 23221100 00011122245678999999977 554
Q ss_pred CCCCcCccC-CCCCCCEEECcCCCCcc--cchhhhcCCCCCEeeccCccCCCc----CCCCCcccceeeccCCcC
Q 045458 789 EGFIPNDIG-NLRSLKVLCLSNNSFVS--LPASISRLSKLECLNLNGCKKLQS----LPPLPARMRIASVNGCAS 856 (1170)
Q Consensus 789 ~~~~~~~l~-~l~sL~~L~Ls~n~l~~--lp~~i~~l~~L~~L~L~~c~~L~~----lp~lp~sL~~L~i~~C~~ 856 (1170)
+.. +..+. .+++|+.|+|++|.++. ++.....+++|+.|+|++|+.... +..-.++|+.|++++|+.
T Consensus 445 ~~~-~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 445 DKV-FEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHH-HHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHH-HHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 322 22333 48999999999999863 333337799999999999986211 112236899999999975
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.76 E-value=1.9e-19 Score=203.52 Aligned_cols=200 Identities=19% Similarity=0.128 Sum_probs=151.8
Q ss_pred CCcccEEEecCCCCCCcccccc--CCCCCCcEEEecCccCCccCcchhcC-----CCCCEEeccCCCCCCcCccccCCCC
Q 045458 538 MKSVKKLVLSGCSKLKKFPKIV--GNMECLSKLLLDGTAIGELPLSIELL-----SKLVSLDLNNCKNFKNLPVTISSLK 610 (1170)
Q Consensus 538 l~~L~~L~L~~~~~~~~l~~~l--~~l~~L~~L~L~~~~i~~l~~~i~~l-----~~L~~L~L~~~~~l~~lp~~l~~l~ 610 (1170)
+++|++|++++|......|..+ +.+++|++|++++|.+..+|..+..+ ++|++|++++|......|..++.++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 5566666666666555566654 77777888888888777777666666 7888888888876666667788888
Q ss_pred cccEEEeeCCCCCCC--cchhh--cCCcccCeEeccCcCCCccCc----cccCCCCCCEEeccCCcCCcccc-ccCCCCC
Q 045458 611 CLRSLVLSGCSKLKK--FPEIV--ESMEDLSELFLDGTSITEVPS----SIELLTGLNVLNLNDCKNLVRIP-DSINGLK 681 (1170)
Q Consensus 611 ~L~~L~L~~~~~~~~--~p~~~--~~l~~L~~L~l~~~~l~~lp~----~i~~l~~L~~L~L~~~~~l~~lp-~~l~~l~ 681 (1170)
+|+.|++++|..... ++..+ ..+++|+.|++++|.+..++. .+..+++|+.|++++|......| ..+..++
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 888888888876544 34444 778888888888888884432 23577899999999888766664 4456688
Q ss_pred CCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCCCccccCCCCCcEEEecCCCCC
Q 045458 682 SLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQPPSGIFHMKNLKALYFRGCKGS 741 (1170)
Q Consensus 682 ~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~~ 741 (1170)
+|+.|++++|... .+|..+. ++|+.|++++|.++.+|. +..+++|++|++++|+..
T Consensus 254 ~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 254 QLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp TCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred CCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCC
Confidence 9999999998654 7777766 899999999999998877 888999999999998754
No 74
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.76 E-value=6.2e-20 Score=207.94 Aligned_cols=238 Identities=18% Similarity=0.100 Sum_probs=155.8
Q ss_pred CCcccEEEecCCCCCCccccccCCCCCCcEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEe
Q 045458 538 MKSVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVL 617 (1170)
Q Consensus 538 l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L 617 (1170)
+++|++|++++|......|..++++++|++|++++|.+..++. +..+++|++|++++|... .++ ..++|+.|++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~-~l~----~~~~L~~L~l 106 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ-ELL----VGPSIETLHA 106 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEE-EEE----ECTTCCEEEC
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccc-ccc----CCCCcCEEEC
Confidence 4455555555555444444555666666666666666554443 555666666666665422 222 2356666666
Q ss_pred eCCCCCCCcchhhcCCcccCeEeccCcCCCccCc-cccCCCCCCEEeccCCcCCccccccC-CCCCCCCEEEeeCcCCCC
Q 045458 618 SGCSKLKKFPEIVESMEDLSELFLDGTSITEVPS-SIELLTGLNVLNLNDCKNLVRIPDSI-NGLKSLQSLNLSGCFKLE 695 (1170)
Q Consensus 618 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l-~~l~~L~~L~L~~c~~l~ 695 (1170)
++|......+. .+++|+.|++++|.+..++. .+..+++|+.|++++|......+..+ ..+++|+.|++++|...
T Consensus 107 ~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~- 182 (317)
T 3o53_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY- 182 (317)
T ss_dssp CSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-
T ss_pred CCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc-
Confidence 66554433222 24566777777777766533 56667777777777776655555444 35777888888777533
Q ss_pred CCccccCCCCCCcEEEccCccCCCCCccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCC
Q 045458 696 NVPETLGQVESLEELHISGTAIRQPPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLY 775 (1170)
Q Consensus 696 ~l~~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~ 775 (1170)
.++. ...+++|++|++++|.++.+|..+..+++|++|++++|... .+|..+..++
T Consensus 183 ~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~------------------------~l~~~~~~l~ 237 (317)
T 3o53_A 183 DVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV------------------------LIEKALRFSQ 237 (317)
T ss_dssp EEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC------------------------EECTTCCCCT
T ss_pred cccc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc------------------------chhhHhhcCC
Confidence 3332 23478889999999988888888888899999999888743 3455677888
Q ss_pred CcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCC
Q 045458 776 SLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNN 810 (1170)
Q Consensus 776 ~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n 810 (1170)
+|+.|++++|++..+.++..+..+++|+.|+++++
T Consensus 238 ~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp TCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 99999999999864567777888888888888754
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=9.9e-19 Score=209.75 Aligned_cols=233 Identities=19% Similarity=0.173 Sum_probs=131.6
Q ss_pred CCcEEEecCccCCccC-cchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEecc
Q 045458 564 CLSKLLLDGTAIGELP-LSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLD 642 (1170)
Q Consensus 564 ~L~~L~L~~~~i~~l~-~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~ 642 (1170)
+|++|++++|.+..++ ..+..+++|+.|+|++|......| +..+++|+.|++++|... .+| ..++|+.|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEE----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCC----CCCCcCEEECc
Confidence 4444444444444432 344444455555554444332222 444555555555544321 111 12555566666
Q ss_pred CcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccC-CCCCCcEEEccCccCCCCC
Q 045458 643 GTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLG-QVESLEELHISGTAIRQPP 721 (1170)
Q Consensus 643 ~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~-~l~~L~~L~L~~~~i~~lp 721 (1170)
+|.+..++.. .+++|+.|++++|......|..+..+++|+.|++++|......|..+. .+++|+.|++++|.++.+|
T Consensus 108 ~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 185 (487)
T 3oja_A 108 NNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (487)
T ss_dssp SSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence 6665554432 345666666666665555555566666666666666655544454443 5666666666666666553
Q ss_pred ccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCccCCCCC
Q 045458 722 SGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRS 801 (1170)
Q Consensus 722 ~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~s 801 (1170)
.. ..+++|++|+|++|... .+|+.+..+++|+.|+|++|.+.. +|..+..+++
T Consensus 186 ~~-~~l~~L~~L~Ls~N~l~------------------------~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~ 238 (487)
T 3oja_A 186 GQ-VVFAKLKTLDLSSNKLA------------------------FMGPEFQSAAGVTWISLRNNKLVL--IEKALRFSQN 238 (487)
T ss_dssp CC-CCCTTCCEEECCSSCCC------------------------EECGGGGGGTTCSEEECTTSCCCE--ECTTCCCCTT
T ss_pred cc-ccCCCCCEEECCCCCCC------------------------CCCHhHcCCCCccEEEecCCcCcc--cchhhccCCC
Confidence 32 24666777777666532 233335566677777777777643 6666777777
Q ss_pred CCEEECcCCCCc--ccchhhhcCCCCCEeeccC
Q 045458 802 LKVLCLSNNSFV--SLPASISRLSKLECLNLNG 832 (1170)
Q Consensus 802 L~~L~Ls~n~l~--~lp~~i~~l~~L~~L~L~~ 832 (1170)
|+.|++++|.+. .+|..+..++.|+.|++..
T Consensus 239 L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~ 271 (487)
T 3oja_A 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (487)
T ss_dssp CCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCEEEcCCCCCcCcchHHHHHhCCCCcEEeccc
Confidence 777777777776 5666667777777776653
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=8.2e-18 Score=201.78 Aligned_cols=225 Identities=16% Similarity=0.097 Sum_probs=173.0
Q ss_pred CccCcchhcC----CCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCCccCc
Q 045458 576 GELPLSIELL----SKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSITEVPS 651 (1170)
Q Consensus 576 ~~l~~~i~~l----~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~ 651 (1170)
..+|..+..+ ++|+.|+|++|......|..+..+++|+.|+|++|......| +..+++|+.|++++|.+..+|.
T Consensus 20 ~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~ 97 (487)
T 3oja_A 20 SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV 97 (487)
T ss_dssp TTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE
T ss_pred hhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC
Confidence 3445444443 489999999998777677788999999999999987665554 7888999999999998887664
Q ss_pred cccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCC-Ccccc-CCCC
Q 045458 652 SIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQP-PSGIF-HMKN 729 (1170)
Q Consensus 652 ~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~l-p~~l~-~l~~ 729 (1170)
.++|+.|++++|......+. .+++|+.|++++|......|..++.+++|+.|++++|.++.. |..+. .+++
T Consensus 98 ----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 170 (487)
T 3oja_A 98 ----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170 (487)
T ss_dssp ----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred ----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc
Confidence 38899999998876655443 367888999988877766677788888899999988888864 44554 6888
Q ss_pred CcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcC
Q 045458 730 LKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSN 809 (1170)
Q Consensus 730 L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~ 809 (1170)
|++|+|++|.... +| ....+++|+.|+|++|.+.. +|..+..+++|+.|+|++
T Consensus 171 L~~L~Ls~N~l~~------------------------~~-~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~Ls~ 223 (487)
T 3oja_A 171 LEHLNLQYNFIYD------------------------VK-GQVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRN 223 (487)
T ss_dssp CCEEECTTSCCCE------------------------EE-CCCCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTT
T ss_pred ccEEecCCCcccc------------------------cc-ccccCCCCCEEECCCCCCCC--CCHhHcCCCCccEEEecC
Confidence 8888888887432 11 13357788888888888853 555688888888888888
Q ss_pred CCCcccchhhhcCCCCCEeeccCccCC
Q 045458 810 NSFVSLPASISRLSKLECLNLNGCKKL 836 (1170)
Q Consensus 810 n~l~~lp~~i~~l~~L~~L~L~~c~~L 836 (1170)
|.++.+|..+..+++|+.|++++|+..
T Consensus 224 N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 224 NKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp SCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred CcCcccchhhccCCCCCEEEcCCCCCc
Confidence 888888888888888888888887654
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=3.8e-16 Score=173.94 Aligned_cols=152 Identities=19% Similarity=0.200 Sum_probs=82.0
Q ss_pred cCCCCCCcEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCe
Q 045458 559 VGNMECLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSE 638 (1170)
Q Consensus 559 l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~ 638 (1170)
+++++++++++++++.+..+|..+. ++++.|++++|......+..+..+++|+.|++++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n------------------ 65 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA------------------ 65 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS------------------
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC------------------
Confidence 4556667777777777766665543 45666666666544444445555555555555554
Q ss_pred EeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCC
Q 045458 639 LFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIR 718 (1170)
Q Consensus 639 L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~ 718 (1170)
.+..++.. ..+++|+.|++++|.. ..+|..+..+++|+.|++++|......+..+..+++|+.|++++|.++
T Consensus 66 ------~l~~~~~~-~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 66 ------ELTKLQVD-GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137 (290)
T ss_dssp ------CCCEEECC-SCCTTCCEEECCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred ------ccCcccCC-CCCCcCCEEECCCCcC-CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC
Confidence 44433332 3444555555554432 244444555566666666665444434455666677777777777666
Q ss_pred CCCccc-cCCCCCcEEEecCC
Q 045458 719 QPPSGI-FHMKNLKALYFRGC 738 (1170)
Q Consensus 719 ~lp~~l-~~l~~L~~L~L~~c 738 (1170)
.+|... ..+++|+.|+|++|
T Consensus 138 ~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 138 TLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CCCTTTTTTCTTCCEEECTTS
T ss_pred ccChhhcccccCCCEEECCCC
Confidence 555432 23344444444333
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.70 E-value=2.1e-16 Score=175.11 Aligned_cols=216 Identities=23% Similarity=0.194 Sum_probs=126.5
Q ss_pred EecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCCc
Q 045458 569 LLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSITE 648 (1170)
Q Consensus 569 ~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~ 648 (1170)
+..+..+..+|..+. ++|++|++++|......+..+..+++|++|++++| .+..
T Consensus 13 ~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n------------------------~l~~ 66 (276)
T 2z62_A 13 QCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC------------------------EIQT 66 (276)
T ss_dssp ECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC------------------------CCCE
T ss_pred EecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCC------------------------cCCc
Confidence 334445555665442 45666666665543333334555555555555554 4443
Q ss_pred cCc-cccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCC--CCcccc
Q 045458 649 VPS-SIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQ--PPSGIF 725 (1170)
Q Consensus 649 lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~--lp~~l~ 725 (1170)
++. .+..+++|+.|++++|......+..+..+++|++|++++|......+..++.+++|++|++++|.++. +|..+.
T Consensus 67 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~ 146 (276)
T 2z62_A 67 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG
T ss_pred cCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhc
Confidence 332 34455555555555555444444455566666666666664444334456666777777777777665 466677
Q ss_pred CCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcC----EEeccCCCCCCCCCcCccCCCCC
Q 045458 726 HMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLT----KLDLSDCDLGEGFIPNDIGNLRS 801 (1170)
Q Consensus 726 ~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~----~L~Ls~c~l~~~~~~~~l~~l~s 801 (1170)
.+++|++|++++|+.... .+..+..+++|+ .|++++|.+.. ++.......+
T Consensus 147 ~l~~L~~L~Ls~N~l~~~-----------------------~~~~~~~l~~L~~l~l~L~ls~n~l~~--~~~~~~~~~~ 201 (276)
T 2z62_A 147 NLTNLEHLDLSSNKIQSI-----------------------YCTDLRVLHQMPLLNLSLDLSLNPMNF--IQPGAFKEIR 201 (276)
T ss_dssp GCTTCCEEECCSSCCCEE-----------------------CGGGGHHHHTCTTCCEEEECCSSCCCE--ECTTSSCSCC
T ss_pred cCCCCCEEECCCCCCCcC-----------------------CHHHhhhhhhccccceeeecCCCcccc--cCccccCCCc
Confidence 777777777777664321 111122233333 78888888743 4444444458
Q ss_pred CCEEECcCCCCcccchh-hhcCCCCCEeeccCccC
Q 045458 802 LKVLCLSNNSFVSLPAS-ISRLSKLECLNLNGCKK 835 (1170)
Q Consensus 802 L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~~ 835 (1170)
|+.|++++|.++.+|.. +..+++|+.|++++|+.
T Consensus 202 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 202 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp EEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred ccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 88889988888888764 47788888888888764
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.70 E-value=3.1e-16 Score=173.71 Aligned_cols=213 Identities=20% Similarity=0.197 Sum_probs=138.5
Q ss_pred CCccccccCCCCCCcEEEecCccCCccCc-chhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhh
Q 045458 552 LKKFPKIVGNMECLSKLLLDGTAIGELPL-SIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIV 630 (1170)
Q Consensus 552 ~~~l~~~l~~l~~L~~L~L~~~~i~~l~~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~ 630 (1170)
...+|..+. ++|++|+++++.+..++. .+..+++|++|++++|......+..+..+++|++|++++|......+..+
T Consensus 19 l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (276)
T 2z62_A 19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96 (276)
T ss_dssp CSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred ccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhh
Confidence 445666443 579999999999998876 78999999999999997665555678888888888888877665555666
Q ss_pred cCCcccCeEeccCcCCCccCc-cccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcE
Q 045458 631 ESMEDLSELFLDGTSITEVPS-SIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEE 709 (1170)
Q Consensus 631 ~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~ 709 (1170)
..+++|+.|++++|.+..++. .+..+++|+.|++++|..... .+|..+..+++|+.
T Consensus 97 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------------~l~~~~~~l~~L~~ 153 (276)
T 2z62_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-----------------------KLPEYFSNLTNLEH 153 (276)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-----------------------CCCGGGGGCTTCCE
T ss_pred cCCccccEEECCCCCccccCchhcccCCCCCEEECcCCcccee-----------------------cCchhhccCCCCCE
Confidence 666677777766666665543 344455555555554443321 23445555555555
Q ss_pred EEccCccCCCCC-ccccCCCCCc----EEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccC
Q 045458 710 LHISGTAIRQPP-SGIFHMKNLK----ALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSD 784 (1170)
Q Consensus 710 L~L~~~~i~~lp-~~l~~l~~L~----~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~ 784 (1170)
|++++|.++.++ ..+..+++|+ .|++++|.... ++.......+|+.|++++
T Consensus 154 L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~------------------------~~~~~~~~~~L~~L~L~~ 209 (276)
T 2z62_A 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF------------------------IQPGAFKEIRLKELALDT 209 (276)
T ss_dssp EECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCE------------------------ECTTSSCSCCEEEEECCS
T ss_pred EECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccc------------------------cCccccCCCcccEEECCC
Confidence 555555555443 2333333343 56666655321 222223334688888888
Q ss_pred CCCCCCCCcCccCCCCCCCEEECcCCCCcc
Q 045458 785 CDLGEGFIPNDIGNLRSLKVLCLSNNSFVS 814 (1170)
Q Consensus 785 c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~ 814 (1170)
|.+. +..+..+..+++|+.|+|++|.+..
T Consensus 210 n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 210 NQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp SCCS-CCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred Ccee-ecCHhHhcccccccEEEccCCcccc
Confidence 8875 3344456888999999999988763
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.69 E-value=6.5e-16 Score=172.07 Aligned_cols=199 Identities=21% Similarity=0.243 Sum_probs=154.6
Q ss_pred cCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCCcc-CccccCCCCCCEEeccCCcCCccccccCCCCCCCC
Q 045458 606 ISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSITEV-PSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQ 684 (1170)
Q Consensus 606 l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~ 684 (1170)
+.++++|+.++++++.. ..+|..+. ++++.|++++|.+..+ +..+..+++|+.|++++|.... ++.. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l-~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNL-TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCC-SSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCC
T ss_pred ccccCCccEEECCCCCC-CcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCC
Confidence 34455555555555432 33443332 5677888888888866 4568899999999999987544 4443 7899999
Q ss_pred EEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCCC-ccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCC
Q 045458 685 SLNLSGCFKLENVPETLGQVESLEELHISGTAIRQPP-SGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPV 763 (1170)
Q Consensus 685 ~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~lp-~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~ 763 (1170)
+|++++|. +..+|..+..+++|+.|++++|.++.+| ..+..+++|++|++++|+...
T Consensus 81 ~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~--------------------- 138 (290)
T 1p9a_G 81 TLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT--------------------- 138 (290)
T ss_dssp EEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC---------------------
T ss_pred EEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc---------------------
Confidence 99999985 5578888899999999999999999987 457889999999999987542
Q ss_pred cccCCCCCCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCcccchhhhcCCCCCEeeccCcc
Q 045458 764 AFSFPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVSLPASISRLSKLECLNLNGCK 834 (1170)
Q Consensus 764 ~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 834 (1170)
..+..+..+++|+.|+|++|++. ...+..+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|+
T Consensus 139 --~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 139 --LPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp --CCTTTTTTCTTCCEEECTTSCCS-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred --cChhhcccccCCCEEECCCCcCC-ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 12233567889999999999985 334445688999999999999999999988888899999998876
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=2.3e-15 Score=166.04 Aligned_cols=150 Identities=19% Similarity=0.207 Sum_probs=80.6
Q ss_pred CCcEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccC
Q 045458 564 CLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDG 643 (1170)
Q Consensus 564 ~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~ 643 (1170)
..+.++++++.++.+|..+. ++|+.|++++|......+..+..+++|++|++++|.
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---------------------- 72 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK---------------------- 72 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC----------------------
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc----------------------
Confidence 34566666666666665432 456666666555333333345555555555555544
Q ss_pred cCCCccCcc-ccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCCCc
Q 045458 644 TSITEVPSS-IELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQPPS 722 (1170)
Q Consensus 644 ~~l~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~lp~ 722 (1170)
+..+|.. +..+++|+.|++++|......+..+..+++|+.|++++|......+..+..+++|+.|++++|.++.+|.
T Consensus 73 --l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 150 (270)
T 2o6q_A 73 --LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK 150 (270)
T ss_dssp --CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred --cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH
Confidence 3333332 2344445555555444333333344556666666666665544445556677777777777777776654
Q ss_pred c-ccCCCCCcEEEecCCC
Q 045458 723 G-IFHMKNLKALYFRGCK 739 (1170)
Q Consensus 723 ~-l~~l~~L~~L~L~~c~ 739 (1170)
. +..+++|++|++++|.
T Consensus 151 ~~~~~l~~L~~L~L~~n~ 168 (270)
T 2o6q_A 151 GVFDKLTSLKELRLYNNQ 168 (270)
T ss_dssp TTTTTCTTCCEEECCSSC
T ss_pred hHccCCcccceeEecCCc
Confidence 3 3445555555555443
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=2e-15 Score=166.61 Aligned_cols=198 Identities=20% Similarity=0.221 Sum_probs=105.6
Q ss_pred ccEEEeeCCCCCCccCccccCCcccEEEecCCCCCCccccccCCCCCCcEEEecCccCCccCcch-hcCCCCCEEeccCC
Q 045458 518 LVILNLTGCTSLATLPGKIFMKSVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTAIGELPLSI-ELLSKLVSLDLNNC 596 (1170)
Q Consensus 518 L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i-~~l~~L~~L~L~~~ 596 (1170)
++.+++++ ..++.+|..+ .++|+.|++++|......+..+.++++|++|++++|.+..++..+ ..+++|++|++++|
T Consensus 18 ~~~l~~~~-~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 18 KNSVDCSS-KKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTEEECTT-SCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEEccC-CCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 44555554 3344455433 245666666666544433445666666666666666666665443 45566666666655
Q ss_pred CCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCcccccc
Q 045458 597 KNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDS 676 (1170)
Q Consensus 597 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~ 676 (1170)
......+..+..+++|+.|++++|......+..+..+++|+.|++++|.+..+|. ..
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----------------------~~ 152 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK-----------------------GV 152 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-----------------------TT
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH-----------------------hH
Confidence 5433333344555555555555554444334444444444444444444444433 33
Q ss_pred CCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCCCcc-ccCCCCCcEEEecCCCC
Q 045458 677 INGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQPPSG-IFHMKNLKALYFRGCKG 740 (1170)
Q Consensus 677 l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~L~~c~~ 740 (1170)
+..+++|+.|++++|......+..+..+++|+.|++++|.++.+|.. +..+++|+.|++++|+.
T Consensus 153 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 44555555555555544333333455566666666666666666543 45566777777766653
No 83
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.67 E-value=7e-16 Score=177.09 Aligned_cols=235 Identities=20% Similarity=0.249 Sum_probs=165.5
Q ss_pred eEEEcCCCCCCCCCCCCCCCceeEEEccCCChHHHhh-cCCCCCCCcEEEcCCCCCCCcCCC--CCCCCCccEEEeeccC
Q 045458 427 RLLDWPGYPLKSLPPNLQLDKTIEFKMLCSRIEELWK-GIKSLNMLKVMKVSYSQSLIKIPD--FTGVPNLEKLYLEGCT 503 (1170)
Q Consensus 427 r~L~l~~~~l~~lp~~~~l~~L~~L~L~~s~i~~L~~-~l~~l~~L~~L~Ls~~~~l~~~~~--~~~l~~L~~L~L~~~~ 503 (1170)
++++++++.++++|..+ +.++++|+|++|+|+.+|. .+..+++|+.|+|++|.....+|. |.++++|+++...++.
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 56788888999999887 5789999999999999986 478999999999999987776664 7889998876666656
Q ss_pred Cccccc-ccccCCCCccEEEeeCCCCCCccCcccc--CCcccEEEecCCCCCCcccc-ccCCC-CCCcEEEecCccCCcc
Q 045458 504 RLREIH-PSLLLHSKLVILNLTGCTSLATLPGKIF--MKSVKKLVLSGCSKLKKFPK-IVGNM-ECLSKLLLDGTAIGEL 578 (1170)
Q Consensus 504 ~l~~~~-~~i~~l~~L~~L~L~~c~~l~~lp~~~~--l~~L~~L~L~~~~~~~~l~~-~l~~l-~~L~~L~L~~~~i~~l 578 (1170)
.+..++ ..+..+++|++|++++|. +..++.... ...+..|++.++..+..++. .+..+ ..++.|++++|.++.+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred cccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 666664 557889999999999854 455554433 55677788877666666553 33433 3566677777777666
Q ss_pred CcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcch-hhcCCcccCeEeccCcCCCccCccccCCC
Q 045458 579 PLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPE-IVESMEDLSELFLDGTSITEVPSSIELLT 657 (1170)
Q Consensus 579 ~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~ 657 (1170)
+.......+| +.|.+.++..++.+|. .+..+++|+.|++++|.++.+|.. .+.
T Consensus 170 ~~~~f~~~~L------------------------~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~ 223 (350)
T 4ay9_X 170 HNSAFNGTQL------------------------DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLE 223 (350)
T ss_dssp CTTSSTTEEE------------------------EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCT
T ss_pred Chhhccccch------------------------hHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhc
Confidence 6554444444 4444444444444443 456667777777777778877763 366
Q ss_pred CCCEEeccCCcCCccccccCCCCCCCCEEEeeC
Q 045458 658 GLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSG 690 (1170)
Q Consensus 658 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~ 690 (1170)
+|+.|.+.++..++.+|. +.++++|+.+++.+
T Consensus 224 ~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 224 NLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp TCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred cchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 777777777777777774 66677777777654
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.67 E-value=5.3e-16 Score=167.83 Aligned_cols=58 Identities=21% Similarity=0.218 Sum_probs=34.8
Q ss_pred CCcCEEeccCCC-CCCCCCcCccCCC-CCCCEEECcCCCCcccchhhhcCCCCCEeeccCccC
Q 045458 775 YSLTKLDLSDCD-LGEGFIPNDIGNL-RSLKVLCLSNNSFVSLPASISRLSKLECLNLNGCKK 835 (1170)
Q Consensus 775 ~~L~~L~Ls~c~-l~~~~~~~~l~~l-~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~ 835 (1170)
++|+.|++++|. +. ...+..+..+ ++|+.|++++|+++.+|.. .+++|+.|+++++..
T Consensus 179 ~~L~~L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp CEEEEEECTTCTTCC-EECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC--
T ss_pred CCCCEEEcCCCCCcc-cCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCccC
Confidence 456666666663 53 2334456666 6777777777777766654 566666666666543
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.65 E-value=7.1e-18 Score=196.84 Aligned_cols=245 Identities=18% Similarity=0.133 Sum_probs=153.8
Q ss_pred ccCCccCcchhcCCCCCEEeccCCCCCCc----CccccCCCCcccEEEeeCCCCC---CCcchhh-------cCCcccCe
Q 045458 573 TAIGELPLSIELLSKLVSLDLNNCKNFKN----LPVTISSLKCLRSLVLSGCSKL---KKFPEIV-------ESMEDLSE 638 (1170)
Q Consensus 573 ~~i~~l~~~i~~l~~L~~L~L~~~~~l~~----lp~~l~~l~~L~~L~L~~~~~~---~~~p~~~-------~~l~~L~~ 638 (1170)
..+..++..+..+++|+.|++++|..... ++..+..+++|+.|+|++|... ..+|..+ ..+++|+.
T Consensus 19 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~ 98 (386)
T 2ca6_A 19 EDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT 98 (386)
T ss_dssp HHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred HHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccE
Confidence 33444555555556666666666544332 2233555666666666665321 1233333 56667777
Q ss_pred EeccCcCCCc-----cCccccCCCCCCEEeccCCcCCcc----ccccCCCC---------CCCCEEEeeCcCCC-CCCc-
Q 045458 639 LFLDGTSITE-----VPSSIELLTGLNVLNLNDCKNLVR----IPDSINGL---------KSLQSLNLSGCFKL-ENVP- 698 (1170)
Q Consensus 639 L~l~~~~l~~-----lp~~i~~l~~L~~L~L~~~~~l~~----lp~~l~~l---------~~L~~L~L~~c~~l-~~l~- 698 (1170)
|++++|.+.. +|..+..+++|+.|++++|..... ++..+..+ ++|++|++++|... ..++
T Consensus 99 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 178 (386)
T 2ca6_A 99 VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178 (386)
T ss_dssp EECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred EECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH
Confidence 7777776664 556667777777777777765322 22222233 77777888777654 2333
Q ss_pred --cccCCCCCCcEEEccCccCC------CCCccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCC
Q 045458 699 --ETLGQVESLEELHISGTAIR------QPPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPS 770 (1170)
Q Consensus 699 --~~l~~l~~L~~L~L~~~~i~------~lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~ 770 (1170)
..+..+++|+.|++++|.++ -.+..+..+++|++|+|++|..... -...+|..
T Consensus 179 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~-------------------g~~~l~~~ 239 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL-------------------GSSALAIA 239 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH-------------------HHHHHHHH
T ss_pred HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH-------------------HHHHHHHH
Confidence 34556778888888888776 2233677788888888888763210 00134445
Q ss_pred CCCCCCcCEEeccCCCCCCC---CCcCcc--CCCCCCCEEECcCCCCcc-----cchhh-hcCCCCCEeeccCccCC
Q 045458 771 LSGLYSLTKLDLSDCDLGEG---FIPNDI--GNLRSLKVLCLSNNSFVS-----LPASI-SRLSKLECLNLNGCKKL 836 (1170)
Q Consensus 771 l~~l~~L~~L~Ls~c~l~~~---~~~~~l--~~l~sL~~L~Ls~n~l~~-----lp~~i-~~l~~L~~L~L~~c~~L 836 (1170)
+..+++|+.|+|++|.+... .++..+ +.+++|+.|+|++|.+.. +|..+ .++++|+.|++++|+.-
T Consensus 240 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 66778899999999987531 134455 448899999999999887 88777 66899999999988644
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=1.9e-15 Score=170.00 Aligned_cols=170 Identities=24% Similarity=0.352 Sum_probs=112.9
Q ss_pred hcCCcccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcE
Q 045458 630 VESMEDLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEE 709 (1170)
Q Consensus 630 ~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~ 709 (1170)
+..+++|+.|++++|.+..++. +..+++|+.|++++|.. ..++ .+..+++|+.|++++|.. ..++. +..+++|+.
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l-~~~~-~~~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~ 133 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPL-KNVS-AIAGLQSIKTLDLTSTQI-TDVTP-LAGLSNLQV 133 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCC-SCCG-GGTTCTTCCEEECTTSCC-CCCGG-GTTCTTCCE
T ss_pred hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcC-CCch-hhcCCCCCCEEECCCCCC-CCchh-hcCCCCCCE
Confidence 3344445555555555555544 55555566666655542 2233 355666666666666643 33333 667777777
Q ss_pred EEccCccCCCCCccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCC
Q 045458 710 LHISGTAIRQPPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGE 789 (1170)
Q Consensus 710 L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~ 789 (1170)
|++++|.++.++. +..+++|++|++++|.... ++. +..+++|+.|++++|.+..
T Consensus 134 L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~------------------------~~~-l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 134 LYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD------------------------LTP-LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp EECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC------------------------CGG-GTTCTTCCEEECCSSCCCC
T ss_pred EECCCCccCcCcc-ccCCCCccEEEccCCcCCC------------------------Chh-hcCCCCCCEEECCCCccCc
Confidence 7777777777665 6777888888888776432 122 5677888888888888853
Q ss_pred CCCcCccCCCCCCCEEECcCCCCcccchhhhcCCCCCEeeccCcc
Q 045458 790 GFIPNDIGNLRSLKVLCLSNNSFVSLPASISRLSKLECLNLNGCK 834 (1170)
Q Consensus 790 ~~~~~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 834 (1170)
++. +..+++|+.|++++|.+..++. +..+++|+.|++++|+
T Consensus 188 --~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 188 --ISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp --CGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEE
T ss_pred --Chh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCe
Confidence 332 7788899999999998888874 7888899999998876
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.65 E-value=1.5e-15 Score=167.65 Aligned_cols=207 Identities=18% Similarity=0.233 Sum_probs=108.5
Q ss_pred CCCCCcEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEe
Q 045458 561 NMECLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELF 640 (1170)
Q Consensus 561 ~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~ 640 (1170)
.+++|+.|.+.++.+..++ .+..+++|+.|++++|.... ++ .+..+++|++|++++|......+..+..+++|+.|+
T Consensus 39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHD-IS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 4445555555555555443 24555555555555554222 22 344444555555554443333333334444444444
Q ss_pred ccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCC
Q 045458 641 LDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQP 720 (1170)
Q Consensus 641 l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~l 720 (1170)
+++|.+..++ +..+..+++|++|++++|......+..+..+++|+.|++++|.++.+
T Consensus 116 L~~n~l~~~~-----------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 116 LVENQLQSLP-----------------------DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp CTTSCCCCCC-----------------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCCcCCccC-----------------------HHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence 4444444333 33344455555555555533332333345555666666666666555
Q ss_pred Ccc-ccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCccCCC
Q 045458 721 PSG-IFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGNL 799 (1170)
Q Consensus 721 p~~-l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l 799 (1170)
+.. +..+++|++|++++|.... ..+..+..+++|+.|++++|++. +.+
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~-----------------------~~~~~~~~l~~L~~L~l~~N~~~--------~~~ 221 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKS-----------------------VPDGVFDRLTSLQYIWLHDNPWD--------CTC 221 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSC-----------------------CCTTTTTTCTTCCEEECCSSCBC--------CCT
T ss_pred CHHHhcCCccCCEEECCCCcCCc-----------------------cCHHHHhCCcCCCEEEccCCCcc--------ccC
Confidence 443 3556666666666655321 12233566777888888877663 345
Q ss_pred CCCCEEECcCCCCc-ccchhhhcCCC
Q 045458 800 RSLKVLCLSNNSFV-SLPASISRLSK 824 (1170)
Q Consensus 800 ~sL~~L~Ls~n~l~-~lp~~i~~l~~ 824 (1170)
++|+.|+++.|.+. .+|.+++.++.
T Consensus 222 ~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 222 PGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred cHHHHHHHHHHhCCCcccCcccccCC
Confidence 67888888888776 57766665544
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=3.7e-17 Score=186.89 Aligned_cols=68 Identities=22% Similarity=0.191 Sum_probs=32.8
Q ss_pred CCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCcccchhhhcC-CCCCEeeccCccCCCcCCC
Q 045458 771 LSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVSLPASISRL-SKLECLNLNGCKKLQSLPP 841 (1170)
Q Consensus 771 l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l-~~L~~L~L~~c~~L~~lp~ 841 (1170)
+..+++|+.|++++|..........+..+++|+.|++++| +.. ..+..+ ..|+.|++++|..-...|.
T Consensus 243 l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~--~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 243 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD--GTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT--TCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH--HHHHHHHhhCcceEEecccCccccCC
Confidence 4455666666666663111111124566777777777776 221 122222 2245555655444333443
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.64 E-value=9.5e-16 Score=172.89 Aligned_cols=200 Identities=20% Similarity=0.145 Sum_probs=145.7
Q ss_pred CCcccEEEecCCCCCCcccccc--CCCCCCcEEEecCccCCcc-C----cchhcCCCCCEEeccCCCCCCcCccccCCCC
Q 045458 538 MKSVKKLVLSGCSKLKKFPKIV--GNMECLSKLLLDGTAIGEL-P----LSIELLSKLVSLDLNNCKNFKNLPVTISSLK 610 (1170)
Q Consensus 538 l~~L~~L~L~~~~~~~~l~~~l--~~l~~L~~L~L~~~~i~~l-~----~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~ 610 (1170)
+++|++|++++|......|..+ ..+++|++|++++|.+... + ..+..+++|++|++++|......+..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4456666666666555555555 6667777777777766542 1 2334577778888877777666666777888
Q ss_pred cccEEEeeCCCCCCC--cc--hhhcCCcccCeEeccCcCCCccCcc----ccCCCCCCEEeccCCcCCccccccCCCC--
Q 045458 611 CLRSLVLSGCSKLKK--FP--EIVESMEDLSELFLDGTSITEVPSS----IELLTGLNVLNLNDCKNLVRIPDSINGL-- 680 (1170)
Q Consensus 611 ~L~~L~L~~~~~~~~--~p--~~~~~l~~L~~L~l~~~~l~~lp~~----i~~l~~L~~L~L~~~~~l~~lp~~l~~l-- 680 (1170)
+|++|++++|..... ++ ..+..+++|+.|++++|.++.++.. +..+++|+.|++++|......|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 888888888775432 22 2235778888888888888766553 4677889999999888777767766665
Q ss_pred -CCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCCCccccCCCCCcEEEecCCCCC
Q 045458 681 -KSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQPPSGIFHMKNLKALYFRGCKGS 741 (1170)
Q Consensus 681 -~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~~ 741 (1170)
++|++|++++|... .+|..+. ++|+.|++++|.++.+|. +..+++|+.|++++|+..
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCC
Confidence 69999999988654 7777664 799999999999998866 678899999999998754
No 90
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.64 E-value=4.8e-15 Score=170.29 Aligned_cols=294 Identities=14% Similarity=0.118 Sum_probs=175.2
Q ss_pred cCCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhc--cCCcHH
Q 045458 22 TEPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSE--KEGSVI 99 (1170)
Q Consensus 22 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~--~~~~~~ 99 (1170)
.++..++.|+||+.++++|.+++..+ +++.|+|++|+|||||+++++++.. .+|+. +..... ......
T Consensus 6 ~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 6 RPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILID-CRELYAERGHITRE 75 (350)
T ss_dssp SCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEE-HHHHHHTTTCBCHH
T ss_pred CCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEE-eecccccccCCCHH
Confidence 34556788999999999999998752 6899999999999999999998752 44544 332210 011113
Q ss_pred HHHHHHHHHHhh---------------cCCC--ccccchhhHHHHHHhhCC-CeEEEEEeCCCCHHH---------HHHh
Q 045458 100 SLQKQLLSNLLK---------------LGDI--SIWHVEDGINIIGSRLRQ-KKVLLIIDDVADVEQ---------LQSL 152 (1170)
Q Consensus 100 ~l~~~ll~~l~~---------------~~~~--~~~~~~~~~~~i~~~L~~-k~~LlVLDdv~~~~~---------l~~l 152 (1170)
.+.+.+...+.. .... ......+..+.+.+..+. ++++|||||++.... +..+
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L 155 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALF 155 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHH
Confidence 334444333211 0000 012233334444444432 489999999976432 2323
Q ss_pred hcCcCCCCCCcEEEEEeCCchhhhhh----C----C--CCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHH
Q 045458 153 AGKRDWFGPGSRILITTRDKQLLVAH----E----V--DEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVL 222 (1170)
Q Consensus 153 ~~~~~~~~~gsrIIiTTR~~~v~~~~----~----~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~ 222 (1170)
...... .++.++|+|++........ . . .....+++.+|+.+|+.+++...+...... ...+.+.+++
T Consensus 156 ~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~--~~~~~~~~i~ 232 (350)
T 2qen_A 156 AYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD--VPENEIEEAV 232 (350)
T ss_dssp HHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHH
T ss_pred HHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHH
Confidence 221111 2578999999876532211 1 1 112379999999999999998754221111 1235678999
Q ss_pred HHhCCCchHHHHHHHhhcC-CCHHHHHHHHHHhhcCCCchHHHHHHhhccCC---ChhhhhHhhhhcccccccCHHHHHH
Q 045458 223 EYAGGLPLALKVLGSFLIG-RTADLWRSALERLKRDPSYKIMSILQISFDGL---QGSEKKIFLDVACFFKRWDRDYVAE 298 (1170)
Q Consensus 223 ~~~~GlPLal~~l~~~L~~-~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L---~~~~k~~fl~~a~f~~~~~~~~l~~ 298 (1170)
+.++|+|+++..++..+.. .+...+. +.+.+ .+...+...+..+ ++..+.++..+|+ ...+...+..
T Consensus 233 ~~tgG~P~~l~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~~ 303 (350)
T 2qen_A 233 ELLDGIPGWLVVFGVEYLRNGDFGRAM---KRTLE----VAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIRD 303 (350)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCHHHHH---HHHHH----HHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHhccccHhHHH---HHHHH----HHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHHH
Confidence 9999999999999876432 2222221 11110 1111121122222 7888999999998 2345566666
Q ss_pred HHhhC--CCCc---cchhhhhhcccceeeeCCCcee-chHHHHHHH
Q 045458 299 ILEGC--GFSP---VIGLEVLIERSLLTVDEDNTLG-MHDLLQELG 338 (1170)
Q Consensus 299 ~~~~~--g~~~---~~~l~~L~~~sLi~~~~~~~~~-mH~li~~~~ 338 (1170)
.+... +... ...++.|.+.+||... ++.|. .|++++++.
T Consensus 304 ~~~~~~~~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 304 YLAVKGTKIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVL 348 (350)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHH
Confidence 55322 2221 2458899999999987 45554 588888765
No 91
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.64 E-value=3.9e-15 Score=164.40 Aligned_cols=156 Identities=23% Similarity=0.284 Sum_probs=73.6
Q ss_pred CCcccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEE
Q 045458 632 SMEDLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELH 711 (1170)
Q Consensus 632 ~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~ 711 (1170)
.+++|+.|++++|.+..++ .+..+++|+.|++++|......+..+..+++|++|++++|......+..++.+++|+.|+
T Consensus 61 ~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 139 (272)
T 3rfs_A 61 YLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139 (272)
T ss_dssp GCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEE
Confidence 3444444444444444432 344455555555555443333333344455555555555543333333344455555555
Q ss_pred ccCccCCCCCccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCC
Q 045458 712 ISGTAIRQPPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGF 791 (1170)
Q Consensus 712 L~~~~i~~lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~ 791 (1170)
+++|.++.++.. .+..+++|+.|++++|++. +.
T Consensus 140 L~~n~l~~~~~~----------------------------------------------~~~~l~~L~~L~l~~n~l~-~~ 172 (272)
T 3rfs_A 140 LAHNQLQSLPKG----------------------------------------------VFDKLTNLTELDLSYNQLQ-SL 172 (272)
T ss_dssp CCSSCCCCCCTT----------------------------------------------TTTTCTTCCEEECCSSCCC-CC
T ss_pred CCCCccCccCHH----------------------------------------------HhccCccCCEEECCCCCcC-cc
Confidence 555555444332 2334445555555555543 23
Q ss_pred CcCccCCCCCCCEEECcCCCCcccchh-hhcCCCCCEeeccCccC
Q 045458 792 IPNDIGNLRSLKVLCLSNNSFVSLPAS-ISRLSKLECLNLNGCKK 835 (1170)
Q Consensus 792 ~~~~l~~l~sL~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~~ 835 (1170)
.+..+..+++|+.|++++|+++.+|.. +..+++|+.|++++|+.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 333345555555555555555544432 34555555555555543
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=1.8e-15 Score=163.58 Aligned_cols=195 Identities=19% Similarity=0.218 Sum_probs=102.1
Q ss_pred cccEEEecCCCCCCccccccCCCCCCcEEEecCcc-CCccCc-chhcCCCCCEEeccCCCCCCcCc-cccCCCCcccEEE
Q 045458 540 SVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTA-IGELPL-SIELLSKLVSLDLNNCKNFKNLP-VTISSLKCLRSLV 616 (1170)
Q Consensus 540 ~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~-i~~l~~-~i~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~ 616 (1170)
+|++|++++|......+..++++++|++|++++|. ++.++. .+..+++|+.|++++|..+..++ ..+..+++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 44444444443322222344444444444444443 444433 34444455555554421222222 2344455555555
Q ss_pred eeCCCCCCCcchhhcCCcccC---eEeccCc-CCCccCcc-ccCCCCCC-EEeccCCcCCccccccCCCCCCCCEEEeeC
Q 045458 617 LSGCSKLKKFPEIVESMEDLS---ELFLDGT-SITEVPSS-IELLTGLN-VLNLNDCKNLVRIPDSINGLKSLQSLNLSG 690 (1170)
Q Consensus 617 L~~~~~~~~~p~~~~~l~~L~---~L~l~~~-~l~~lp~~-i~~l~~L~-~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~ 690 (1170)
+++|.... +|. +..+++|+ .|++++| .+..+|.. +..+++|+ .|++++|... .+|......++|+.|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCC
Confidence 55544322 333 44444444 5555555 55555432 55566666 6666655433 4444333336677777777
Q ss_pred cCCCCCC-ccccCCC-CCCcEEEccCccCCCCCccccCCCCCcEEEecCCC
Q 045458 691 CFKLENV-PETLGQV-ESLEELHISGTAIRQPPSGIFHMKNLKALYFRGCK 739 (1170)
Q Consensus 691 c~~l~~l-~~~l~~l-~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~ 739 (1170)
|..+..+ +..+..+ ++|+.|++++|.++.+|.. .+++|+.|.+.++.
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 7534444 3456667 7888888888888877765 67788888887754
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.63 E-value=7e-17 Score=184.61 Aligned_cols=226 Identities=18% Similarity=0.245 Sum_probs=104.7
Q ss_pred CCCcEEEcCCCCCCCcCCCCCCCCCccEEEeeccCCccc-ccccccCCCCccEEEeeCCCCCCccCcccc-CCcccEEEe
Q 045458 469 NMLKVMKVSYSQSLIKIPDFTGVPNLEKLYLEGCTRLRE-IHPSLLLHSKLVILNLTGCTSLATLPGKIF-MKSVKKLVL 546 (1170)
Q Consensus 469 ~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~-~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~L 546 (1170)
++++.|+++++......+.+..+++|++|++++|..... ++..+..+++|++|++++|......+..+. +++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 456666666665444455555666666666666542222 444455555555555555532222222222 444444444
Q ss_pred cCCCCCC--ccccccCCCCCCcEEEecCc-cCCc--cCcchhcCC-CCCEEeccCCCCCCcCccccCCCCcccEEEeeCC
Q 045458 547 SGCSKLK--KFPKIVGNMECLSKLLLDGT-AIGE--LPLSIELLS-KLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGC 620 (1170)
Q Consensus 547 ~~~~~~~--~l~~~l~~l~~L~~L~L~~~-~i~~--l~~~i~~l~-~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~ 620 (1170)
++|..+. .++..+.++++|++|++++| .+.. ++..+..++ +|++|++++|..
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~---------------------- 207 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK---------------------- 207 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG----------------------
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcc----------------------
Confidence 4442222 13333334444444444444 3332 233333344 444444444320
Q ss_pred CCC-CCcchhhcCCcccCeEeccCcC-CC-ccCccccCCCCCCEEeccCCcCCc-cccccCCCCCCCCEEEeeCcCCCCC
Q 045458 621 SKL-KKFPEIVESMEDLSELFLDGTS-IT-EVPSSIELLTGLNVLNLNDCKNLV-RIPDSINGLKSLQSLNLSGCFKLEN 696 (1170)
Q Consensus 621 ~~~-~~~p~~~~~l~~L~~L~l~~~~-l~-~lp~~i~~l~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L~L~~c~~l~~ 696 (1170)
... ..++..+..+++|+.|++++|. ++ ..+..+..+++|+.|++++|.... .....+..+++|+.|++++| ....
T Consensus 208 ~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~ 286 (336)
T 2ast_B 208 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG 286 (336)
T ss_dssp GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT
T ss_pred cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH
Confidence 111 2233444445555555555554 32 334455556666666666664221 11123555667777777766 1111
Q ss_pred CccccCCC-CCCcEEEccCccCCCC
Q 045458 697 VPETLGQV-ESLEELHISGTAIRQP 720 (1170)
Q Consensus 697 l~~~l~~l-~~L~~L~L~~~~i~~l 720 (1170)
.+..+ .+|+.|++++|.++..
T Consensus 287 ---~~~~l~~~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 287 ---TLQLLKEALPHLQINCSHFTTI 308 (336)
T ss_dssp ---CHHHHHHHSTTSEESCCCSCCT
T ss_pred ---HHHHHHhhCcceEEecccCccc
Confidence 11111 2355555677777644
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.62 E-value=1.4e-15 Score=171.42 Aligned_cols=204 Identities=23% Similarity=0.233 Sum_probs=118.8
Q ss_pred CCCCCEEeccCCCCCCcCcccc--CCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCCccCccccCCCCCCEE
Q 045458 585 LSKLVSLDLNNCKNFKNLPVTI--SSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSITEVPSSIELLTGLNVL 662 (1170)
Q Consensus 585 l~~L~~L~L~~~~~l~~lp~~l--~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 662 (1170)
+++|++|++++|......|..+ ..+++|++|++++|......+..-. ..+..+++|+.|
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~-------------------~~~~~~~~L~~L 150 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAE-------------------LQQWLKPGLKVL 150 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHH-------------------HHTTBCSCCCEE
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHH-------------------HHhhhccCCCEE
Confidence 4557777777776666666555 6666666666666655443221000 112234455555
Q ss_pred eccCCcCCccccccCCCCCCCCEEEeeCcCCCCC--C--ccccCCCCCCcEEEccCccCCCCCcc----ccCCCCCcEEE
Q 045458 663 NLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLEN--V--PETLGQVESLEELHISGTAIRQPPSG----IFHMKNLKALY 734 (1170)
Q Consensus 663 ~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~--l--~~~l~~l~~L~~L~L~~~~i~~lp~~----l~~l~~L~~L~ 734 (1170)
++++|......+..+..+++|++|++++|..... + +..++.+++|++|++++|.++.++.. +..+++|++|+
T Consensus 151 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~ 230 (310)
T 4glp_A 151 SIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLD 230 (310)
T ss_dssp EEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEE
T ss_pred EeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEE
Confidence 5555544444444455555555555555543221 1 11224556666666666666554432 34566777777
Q ss_pred ecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCC---CCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCC
Q 045458 735 FRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSG---LYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNS 811 (1170)
Q Consensus 735 L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~---l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~ 811 (1170)
|++|.... ..|..+.. +++|+.|+|++|++. .+|..+. ++|+.|+|++|+
T Consensus 231 Ls~N~l~~-----------------------~~p~~~~~~~~~~~L~~L~Ls~N~l~--~lp~~~~--~~L~~L~Ls~N~ 283 (310)
T 4glp_A 231 LSHNSLRA-----------------------TVNPSAPRCMWSSALNSLNLSFAGLE--QVPKGLP--AKLRVLDLSSNR 283 (310)
T ss_dssp CTTSCCCC-----------------------CCCSCCSSCCCCTTCCCEECCSSCCC--SCCSCCC--SCCSCEECCSCC
T ss_pred CCCCCCCc-----------------------cchhhHHhccCcCcCCEEECCCCCCC--chhhhhc--CCCCEEECCCCc
Confidence 77766432 11222333 367888888888875 3666553 788888888888
Q ss_pred CcccchhhhcCCCCCEeeccCccC
Q 045458 812 FVSLPASISRLSKLECLNLNGCKK 835 (1170)
Q Consensus 812 l~~lp~~i~~l~~L~~L~L~~c~~ 835 (1170)
++.+|. +..+++|+.|+|++|+.
T Consensus 284 l~~~~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 284 LNRAPQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CCSCCC-TTSCCCCSCEECSSTTT
T ss_pred CCCCch-hhhCCCccEEECcCCCC
Confidence 887765 67788888888888753
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=7.9e-15 Score=168.29 Aligned_cols=223 Identities=16% Similarity=0.157 Sum_probs=115.0
Q ss_pred EEecCccCCccCcchhcCCCCCEEeccCCCCCCcCc-cccCCCCcccEEEeeCCCCCCCcch-hhcCCcccCe-EeccCc
Q 045458 568 LLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLP-VTISSLKCLRSLVLSGCSKLKKFPE-IVESMEDLSE-LFLDGT 644 (1170)
Q Consensus 568 L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~~~~~~p~-~~~~l~~L~~-L~l~~~ 644 (1170)
++.++++++++|..+ .+++++|+|++|.. +.+| ..+.++++|++|+|++|...+.+|. .+.++++|.. +.+.+|
T Consensus 14 v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i-~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 14 FLCQESKVTEIPSDL--PRNAIELRFVLTKL-RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEESTTCCSCCTTC--CTTCSEEEEESCCC-SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEecCCCCCccCcCc--CCCCCEEEccCCcC-CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 344444455555433 23455555555442 2232 2345555555555555554443332 2344444433 233344
Q ss_pred CCCccC-ccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCcc-ccCCC-CCCcEEEccCccCCCCC
Q 045458 645 SITEVP-SSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPE-TLGQV-ESLEELHISGTAIRQPP 721 (1170)
Q Consensus 645 ~l~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~-~l~~l-~~L~~L~L~~~~i~~lp 721 (1170)
.+..++ ..+..+++|+.|++++|......+..+....++..|++.++..+..++. .+..+ ..++.|++++|.++.++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~ 170 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence 555442 3345555555555555543333333333444555566655544444332 12222 23445555555554443
Q ss_pred ccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCccCCCCC
Q 045458 722 SGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRS 801 (1170)
Q Consensus 722 ~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~s 801 (1170)
... ....+|+.|++++|+..+...+..+..+++
T Consensus 171 ~~~-----------------------------------------------f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~ 203 (350)
T 4ay9_X 171 NSA-----------------------------------------------FNGTQLDELNLSDNNNLEELPNDVFHGASG 203 (350)
T ss_dssp TTS-----------------------------------------------STTEEEEEEECTTCTTCCCCCTTTTTTEEC
T ss_pred hhh-----------------------------------------------ccccchhHHhhccCCcccCCCHHHhccCcc
Confidence 332 233456666666544333333345678888
Q ss_pred CCEEECcCCCCcccchhhhcCCCCCEeeccCccCCCcCCCC
Q 045458 802 LKVLCLSNNSFVSLPASISRLSKLECLNLNGCKKLQSLPPL 842 (1170)
Q Consensus 802 L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l 842 (1170)
|+.|+|++|+++.+|.. .+.+|+.|.+.+|..++.+|.+
T Consensus 204 L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l 242 (350)
T 4ay9_X 204 PVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTL 242 (350)
T ss_dssp CSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCT
T ss_pred cchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCc
Confidence 88888888888888853 3667777777777777777753
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.60 E-value=9.8e-17 Score=187.16 Aligned_cols=234 Identities=18% Similarity=0.130 Sum_probs=111.8
Q ss_pred CCCceeEEEccCCChHH-----HhhcCCCCCCCcEEEcCCCCCCC---cCCC--------CCCCCCccEEEeeccCCcc-
Q 045458 444 QLDKTIEFKMLCSRIEE-----LWKGIKSLNMLKVMKVSYSQSLI---KIPD--------FTGVPNLEKLYLEGCTRLR- 506 (1170)
Q Consensus 444 ~l~~L~~L~L~~s~i~~-----L~~~l~~l~~L~~L~Ls~~~~l~---~~~~--------~~~l~~L~~L~L~~~~~l~- 506 (1170)
.+.+|++|++++|.+.. ++..+..+++|++|+|++|..-. .+|. +..+++|++|+|++|....
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 34455555555555443 34456666666666666653211 1121 2455666666666554322
Q ss_pred ---cccccccCCCCccEEEeeCCCCCCccCccccCCcccEEEecCCCCCCccccccCCC---------CCCcEEEecCcc
Q 045458 507 ---EIHPSLLLHSKLVILNLTGCTSLATLPGKIFMKSVKKLVLSGCSKLKKFPKIVGNM---------ECLSKLLLDGTA 574 (1170)
Q Consensus 507 ---~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~~~~l~~~l~~l---------~~L~~L~L~~~~ 574 (1170)
.++..+..+++|++|++++|......+.. ++..+..+ ++|++|++++|.
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~-------------------l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAK-------------------IARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHH-------------------HHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHH-------------------HHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 24445555555555555554431111111 11111112 344444444444
Q ss_pred CC--ccC---cchhcCCCCCEEeccCCCCCC-----cCccccCCCCcccEEEeeCCCCC----CCcchhhcCCcccCeEe
Q 045458 575 IG--ELP---LSIELLSKLVSLDLNNCKNFK-----NLPVTISSLKCLRSLVLSGCSKL----KKFPEIVESMEDLSELF 640 (1170)
Q Consensus 575 i~--~l~---~~i~~l~~L~~L~L~~~~~l~-----~lp~~l~~l~~L~~L~L~~~~~~----~~~p~~~~~l~~L~~L~ 640 (1170)
+. .++ ..+..+++|+.|++++|.... ..|..+..+++|+.|+|++|... ..+|..+..+++|+.|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 42 222 233444455555555543321 12224445555555555555432 33455555555555555
Q ss_pred ccCcCCCc-----cCcccc--CCCCCCEEeccCCcCCc----cccccC-CCCCCCCEEEeeCcCCCCC
Q 045458 641 LDGTSITE-----VPSSIE--LLTGLNVLNLNDCKNLV----RIPDSI-NGLKSLQSLNLSGCFKLEN 696 (1170)
Q Consensus 641 l~~~~l~~-----lp~~i~--~l~~L~~L~L~~~~~l~----~lp~~l-~~l~~L~~L~L~~c~~l~~ 696 (1170)
+++|.+.. ++..+. .+++|+.|++++|.... .+|..+ .++++|+.|++++|.....
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 55555553 244442 25666666666665544 355544 4456666666666655443
No 97
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.60 E-value=9.4e-15 Score=164.31 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=16.6
Q ss_pred CCCCCCcEEEccCccCCCCCccccCCCCCcEEEecCCC
Q 045458 702 GQVESLEELHISGTAIRQPPSGIFHMKNLKALYFRGCK 739 (1170)
Q Consensus 702 ~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~ 739 (1170)
..+++|+.|++++|.++.++. +..+++|+.|++++|+
T Consensus 192 ~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 192 ASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp GGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEE
T ss_pred cCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCe
Confidence 334444444444444444432 3444444444444444
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.59 E-value=3.4e-14 Score=154.83 Aligned_cols=176 Identities=24% Similarity=0.303 Sum_probs=139.9
Q ss_pred cccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEcc
Q 045458 634 EDLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHIS 713 (1170)
Q Consensus 634 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~ 713 (1170)
...+.++++++.+..+|..+. ++|+.|++++|......+..+..+++|++|++++|......+..+..+++|+.|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 356778888888888887665 688999999888777777778889999999999987766666778888999999999
Q ss_pred CccCCCCCc-cccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCC
Q 045458 714 GTAIRQPPS-GIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFI 792 (1170)
Q Consensus 714 ~~~i~~lp~-~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~ 792 (1170)
+|.++.++. .+..+++|++|+|++|.... ..+..+..+++|+.|+|++|++. +..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------------------~~~~~~~~l~~L~~L~Ls~N~l~-~~~ 147 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKS-----------------------LPSGVFDRLTKLKELRLNTNQLQ-SIP 147 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----------------------CCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCC-----------------------cChhHhccCCcccEEECcCCcCC-ccC
Confidence 999988765 45778899999998887442 11223567888999999999885 344
Q ss_pred cCccCCCCCCCEEECcCCCCcccch-hhhcCCCCCEeeccCccC
Q 045458 793 PNDIGNLRSLKVLCLSNNSFVSLPA-SISRLSKLECLNLNGCKK 835 (1170)
Q Consensus 793 ~~~l~~l~sL~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~ 835 (1170)
+..+..+++|+.|+|++|.++.+|. .+..+++|+.|+|++|+.
T Consensus 148 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 4568888999999999999988775 678888999999988764
No 99
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.59 E-value=4e-14 Score=163.03 Aligned_cols=294 Identities=15% Similarity=0.151 Sum_probs=169.6
Q ss_pred cCCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhc-cCCcHHH
Q 045458 22 TEPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSE-KEGSVIS 100 (1170)
Q Consensus 22 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~ 100 (1170)
.++..++.||||+.++++|.+ +.. +++.|+|++|+|||||+++++++.... .+|+. ...... .......
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~ 76 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLD-LRKFEERNYISYKD 76 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEE-GGGGTTCSCCCHHH
T ss_pred CCCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEE-chhhccccCCCHHH
Confidence 345567889999999999999 753 589999999999999999999876532 45554 332200 0011122
Q ss_pred HHHHHHHHHhh-------------cC------CC--c-------cccchhhHHHHHHhhCCCeEEEEEeCCCCHH-----
Q 045458 101 LQKQLLSNLLK-------------LG------DI--S-------IWHVEDGINIIGSRLRQKKVLLIIDDVADVE----- 147 (1170)
Q Consensus 101 l~~~ll~~l~~-------------~~------~~--~-------~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~----- 147 (1170)
....+...+.. .- .. . .....+..+.+.+.-+ ++++|||||++...
T Consensus 77 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~ 155 (357)
T 2fna_A 77 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGV 155 (357)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCch
Confidence 22222222210 00 00 0 0112222233333222 49999999996642
Q ss_pred HHHHhhcCcCCCCCCcEEEEEeCCchhhhhh--------CCC-C-ccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHH
Q 045458 148 QLQSLAGKRDWFGPGSRILITTRDKQLLVAH--------EVD-E-EHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVEL 217 (1170)
Q Consensus 148 ~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~--------~~~-~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~ 217 (1170)
++..+........++.++|+|+|........ ... . ...+++.+|+.+|+.+++...+.......+.
T Consensus 156 ~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~---- 231 (357)
T 2fna_A 156 NLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD---- 231 (357)
T ss_dssp CCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----
T ss_pred hHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----
Confidence 2211111111112478999999986532211 111 1 2479999999999999998754211111111
Q ss_pred HHHHHHHhCCCchHHHHHHHhhcC-CCHHHHHHH-HHHhhcCCCchHHHHHH-hhc--cCCChhhhhHhhhhcccccccC
Q 045458 218 SERVLEYAGGLPLALKVLGSFLIG-RTADLWRSA-LERLKRDPSYKIMSILQ-ISF--DGLQGSEKKIFLDVACFFKRWD 292 (1170)
Q Consensus 218 ~~~i~~~~~GlPLal~~l~~~L~~-~~~~~w~~~-l~~l~~~~~~~i~~~l~-~sy--~~L~~~~k~~fl~~a~f~~~~~ 292 (1170)
...+++.++|+|+++..++..+.. .+...|... .+... ..+..-+. ..+ ..+++.++.++..+|+ . . +
T Consensus 232 ~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~-~ 304 (357)
T 2fna_A 232 YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----KLILKEFENFLHGREIARKRYLNIMRTLSK-C-G-K 304 (357)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-C
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-C
Confidence 178999999999999999877642 233333211 11110 01111122 111 1688889999999998 3 2 6
Q ss_pred HHHHHHHHh-hCC--CC---ccchhhhhhcccceeeeCCCcee-chHHHHHHH
Q 045458 293 RDYVAEILE-GCG--FS---PVIGLEVLIERSLLTVDEDNTLG-MHDLLQELG 338 (1170)
Q Consensus 293 ~~~l~~~~~-~~g--~~---~~~~l~~L~~~sLi~~~~~~~~~-mH~li~~~~ 338 (1170)
...+.+... ..| .. ....++.|.+.+||.... +.|. .|++++++.
T Consensus 305 ~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 305 WSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHhh
Confidence 666664432 123 21 234589999999999874 5555 688988763
No 100
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.57 E-value=6.6e-14 Score=164.76 Aligned_cols=290 Identities=17% Similarity=0.108 Sum_probs=170.9
Q ss_pred CCCccCccccchhhHHHHHHHH-cC--CC--CCeEEEEE--EeCCCccHHHHHHHHHhhhccc-----cCc-eeEEEecc
Q 045458 23 EPETIKELVGIESRLEKIRFLM-GT--GS--SDVRMIGI--WGMGGLGKTTLARVVYDSMSYE-----FDG-SSFLADVR 89 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L-~~--~~--~~~~vi~I--~G~gGiGKTtLA~~~~~~~~~~-----f~~-~~~~~~~~ 89 (1170)
+...++.++||+.++++|.+++ .. .. ...+.+.| +|++|+||||||+.++++.... +.. .+|+. ..
T Consensus 17 ~~~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 95 (412)
T 1w5s_A 17 ENYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN-AF 95 (412)
T ss_dssp TTCCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE-GG
T ss_pred CccCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE-CC
Confidence 3445678999999999999888 42 11 23456667 9999999999999999877553 232 23333 21
Q ss_pred hhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhC--CCeEEEEEeCCCCH--------HHHHHhhcCcCCC
Q 045458 90 EKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLR--QKKVLLIIDDVADV--------EQLQSLAGKRDWF 159 (1170)
Q Consensus 90 ~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~--~k~~LlVLDdv~~~--------~~l~~l~~~~~~~ 159 (1170)
.......+..+++..+.........+..+....+.+.+. +++++|||||++.. +.+..+.......
T Consensus 96 ----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~ 171 (412)
T 1w5s_A 96 ----NAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEI 171 (412)
T ss_dssp ----GCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHS
T ss_pred ----CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhc
Confidence 122336777778777743211111223344556666664 68999999999764 3343333222111
Q ss_pred ---C--CCcEEEEEeCCchhhhhhC-------CCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhC-
Q 045458 160 ---G--PGSRILITTRDKQLLVAHE-------VDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAG- 226 (1170)
Q Consensus 160 ---~--~gsrIIiTTR~~~v~~~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~- 226 (1170)
+ ....||+|||...+..... ..-...+++++++.++++++|..++.....+.....+.+..+++.++
T Consensus 172 ~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~ 251 (412)
T 1w5s_A 172 PSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGE 251 (412)
T ss_dssp CCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCG
T ss_pred ccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHH
Confidence 2 3455888887665321110 11112499999999999999976542111111122456788999999
Q ss_pred -----CCchHHHHHHHhhc------CC---CHHHHHHHHHHhhcCCCchHHHHHHhhccCCChhhhhHhhhhccccc---
Q 045458 227 -----GLPLALKVLGSFLI------GR---TADLWRSALERLKRDPSYKIMSILQISFDGLQGSEKKIFLDVACFFK--- 289 (1170)
Q Consensus 227 -----GlPLal~~l~~~L~------~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~--- 289 (1170)
|+|..+..++.... +. +.+.+..++..... ...+..+++.|++.++.++..+|.+..
T Consensus 252 ~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~ 325 (412)
T 1w5s_A 252 DKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGM 325 (412)
T ss_dssp GGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCC
Confidence 99976655543221 11 33444444433210 234566778999999999999997642
Q ss_pred -ccCHHHHHH----HH-hhCCCCc------cchhhhhhcccceeee
Q 045458 290 -RWDRDYVAE----IL-EGCGFSP------VIGLEVLIERSLLTVD 323 (1170)
Q Consensus 290 -~~~~~~l~~----~~-~~~g~~~------~~~l~~L~~~sLi~~~ 323 (1170)
.+....+.. +. ...|..+ ...++.|.+.+||...
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 326 EWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp SSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 234433322 22 2233221 2347899999999875
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.56 E-value=7.7e-14 Score=151.94 Aligned_cols=175 Identities=17% Similarity=0.189 Sum_probs=122.2
Q ss_pred CcEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCc
Q 045458 565 LSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGT 644 (1170)
Q Consensus 565 L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~ 644 (1170)
.++++++++.+..+|..+. ++|+.|++++|......+..+..+++|++|++++|......+..+..+++|+.|++++|
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 4556666666666665543 46666777666655555556667777777777777666666666677777777777777
Q ss_pred CCCccCc-cccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCCCc-
Q 045458 645 SITEVPS-SIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQPPS- 722 (1170)
Q Consensus 645 ~l~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~lp~- 722 (1170)
.+..+|. .+..+++|+.|++++|......+..+..+++|+.|++++|......+..++.+++|+.|++++|.++.++.
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence 7776653 45677778888887776554444456778888888888885544444467788888888888888887765
Q ss_pred cccCCCCCcEEEecCCCCC
Q 045458 723 GIFHMKNLKALYFRGCKGS 741 (1170)
Q Consensus 723 ~l~~l~~L~~L~L~~c~~~ 741 (1170)
.+..+++|++|++++|+..
T Consensus 174 ~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 174 AFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTCTTCCEEECCSCCBC
T ss_pred HHhCCCCCCEEEeeCCcee
Confidence 5677888888888888743
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.54 E-value=3.9e-16 Score=180.16 Aligned_cols=252 Identities=15% Similarity=0.103 Sum_probs=125.4
Q ss_pred EEecCCCCCCccccccCCCCCCcEEEecCccCCccC-----cchhcCC-CCCEEeccCCCCCCcCccccCCC-----Ccc
Q 045458 544 LVLSGCSKLKKFPKIVGNMECLSKLLLDGTAIGELP-----LSIELLS-KLVSLDLNNCKNFKNLPVTISSL-----KCL 612 (1170)
Q Consensus 544 L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~-----~~i~~l~-~L~~L~L~~~~~l~~lp~~l~~l-----~~L 612 (1170)
+.++.+.....+|..+....+|++|++++|.+...+ ..+..++ +|++|++++|......+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 445555555556666666666777777777666555 3455565 66666666665444333333332 566
Q ss_pred cEEEeeCCCCCCCcchh----hcCC-cccCeEeccCcCCCccCcc-----ccC-CCCCCEEeccCCcCCccccccCCCCC
Q 045458 613 RSLVLSGCSKLKKFPEI----VESM-EDLSELFLDGTSITEVPSS-----IEL-LTGLNVLNLNDCKNLVRIPDSINGLK 681 (1170)
Q Consensus 613 ~~L~L~~~~~~~~~p~~----~~~l-~~L~~L~l~~~~l~~lp~~-----i~~-l~~L~~L~L~~~~~l~~lp~~l~~l~ 681 (1170)
++|++++|......+.. +..+ ++|+.|++++|.+...+.. +.. .++|+.|++++|......+.
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~------ 156 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD------ 156 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH------
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH------
Confidence 66666666544433332 2223 5566666665555543321 222 23555555555443321110
Q ss_pred CCCEEEeeCcCCCCCCccccCCCC-CCcEEEccCccCCCCCc-----cccCC-CCCcEEEecCCCCCCCCCCcccCcccc
Q 045458 682 SLQSLNLSGCFKLENVPETLGQVE-SLEELHISGTAIRQPPS-----GIFHM-KNLKALYFRGCKGSPSSTSWSRHFPFN 754 (1170)
Q Consensus 682 ~L~~L~L~~c~~l~~l~~~l~~l~-~L~~L~L~~~~i~~lp~-----~l~~l-~~L~~L~L~~c~~~~~~~~~~~~~~l~ 754 (1170)
.++..+..++ +|++|++++|.++.... .+..+ ++|++|+|++|......
T Consensus 157 --------------~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~---------- 212 (362)
T 3goz_A 157 --------------ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS---------- 212 (362)
T ss_dssp --------------HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC----------
T ss_pred --------------HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH----------
Confidence 1111222222 45555555554443221 22233 35555555555422100
Q ss_pred cccccCCCCcccCCCCCCC-CCCcCEEeccCCCCCCCC---CcCccCCCCCCCEEECcCCCCc--------ccchhhhcC
Q 045458 755 LIKRSLDPVAFSFPPSLSG-LYSLTKLDLSDCDLGEGF---IPNDIGNLRSLKVLCLSNNSFV--------SLPASISRL 822 (1170)
Q Consensus 755 ~~~~~~~~~~~~lp~~l~~-l~~L~~L~Ls~c~l~~~~---~~~~l~~l~sL~~L~Ls~n~l~--------~lp~~i~~l 822 (1170)
...++..+.. .++|+.|+|++|.+.+.. +...+..+++|+.|+|++|.+. .++..+..+
T Consensus 213 ---------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l 283 (362)
T 3goz_A 213 ---------YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNI 283 (362)
T ss_dssp ---------HHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTC
T ss_pred ---------HHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccC
Confidence 0011122222 236777777777664421 1233466677788888777633 233455667
Q ss_pred CCCCEeeccCcc
Q 045458 823 SKLECLNLNGCK 834 (1170)
Q Consensus 823 ~~L~~L~L~~c~ 834 (1170)
++|+.|++++|+
T Consensus 284 ~~L~~LdL~~N~ 295 (362)
T 3goz_A 284 QKIILVDKNGKE 295 (362)
T ss_dssp CEEEEECTTSCB
T ss_pred CceEEEecCCCc
Confidence 778888888765
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.53 E-value=1e-13 Score=167.35 Aligned_cols=132 Identities=20% Similarity=0.253 Sum_probs=74.5
Q ss_pred CCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCCccCccccCCCCCCEEeccC
Q 045458 587 KLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSITEVPSSIELLTGLNVLNLND 666 (1170)
Q Consensus 587 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~ 666 (1170)
+|+.|++++|.. ..+|..+ +++|+.|++++|... .+| ..+++|+.|++++|.++.+|. +.. +|+.|++++
T Consensus 60 ~L~~L~Ls~n~L-~~lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNL-SSLPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCC-SCCCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCC-CccCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 788888887764 3466544 366777777776544 455 345666666666666666665 333 666666666
Q ss_pred CcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCCCccccCCCCCcEEEecCCC
Q 045458 667 CKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQPPSGIFHMKNLKALYFRGCK 739 (1170)
Q Consensus 667 ~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~ 739 (1170)
|.... +|. .+++|+.|++++|... .+|. .+++|+.|++++|.++.+|. +. ++|+.|+|++|.
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLT-MLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL 191 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC
T ss_pred CcCCC-CCC---cCccccEEeCCCCccC-cCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC
Confidence 54333 444 3555555555555332 2443 34555555555555555554 32 555555555554
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.50 E-value=1.6e-13 Score=152.76 Aligned_cols=169 Identities=26% Similarity=0.382 Sum_probs=121.8
Q ss_pred CCcccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEE
Q 045458 632 SMEDLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELH 711 (1170)
Q Consensus 632 ~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~ 711 (1170)
.+++|+.|++++|.+..++. +..+++|+.|++++|.... ++. +..+++|+.|++++|.. ..++ .+..+++|+.|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKV-KDLS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCC-CCGG-GGTTCTTCCEEE
T ss_pred hcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcC-CCCh-hhccCCCCCEEE
Confidence 34555566666666665543 5666777777777665443 332 66677777777777743 3343 377788888888
Q ss_pred ccCccCCCCCccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCC
Q 045458 712 ISGTAIRQPPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGF 791 (1170)
Q Consensus 712 L~~~~i~~lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~ 791 (1170)
+++|.++.+ ..+..+++|++|++++|.... + ..+..+++|+.|++++|.+..
T Consensus 119 L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~------------------------~-~~l~~l~~L~~L~L~~N~l~~-- 170 (291)
T 1h6t_A 119 LEHNGISDI-NGLVHLPQLESLYLGNNKITD------------------------I-TVLSRLTKLDTLSLEDNQISD-- 170 (291)
T ss_dssp CTTSCCCCC-GGGGGCTTCCEEECCSSCCCC------------------------C-GGGGGCTTCSEEECCSSCCCC--
T ss_pred CCCCcCCCC-hhhcCCCCCCEEEccCCcCCc------------------------c-hhhccCCCCCEEEccCCcccc--
Confidence 888888776 457788888888888887442 1 235677889999999998854
Q ss_pred CcCccCCCCCCCEEECcCCCCcccchhhhcCCCCCEeeccCccC
Q 045458 792 IPNDIGNLRSLKVLCLSNNSFVSLPASISRLSKLECLNLNGCKK 835 (1170)
Q Consensus 792 ~~~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~ 835 (1170)
++. +..+++|+.|++++|.++.+|. +..+++|+.|++++|+.
T Consensus 171 ~~~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 171 IVP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CGG-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEE
T ss_pred chh-hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcc
Confidence 333 8889999999999999998874 88899999999998763
No 105
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.50 E-value=2e-15 Score=174.24 Aligned_cols=54 Identities=13% Similarity=0.153 Sum_probs=29.0
Q ss_pred EEEccCCChHH-HhhcCCCCCCCcEEEcCCCCCCCcCC-----CCCCCC-CccEEEeeccC
Q 045458 450 EFKMLCSRIEE-LWKGIKSLNMLKVMKVSYSQSLIKIP-----DFTGVP-NLEKLYLEGCT 503 (1170)
Q Consensus 450 ~L~L~~s~i~~-L~~~l~~l~~L~~L~Ls~~~~l~~~~-----~~~~l~-~L~~L~L~~~~ 503 (1170)
++.++++.+.. +|..+...++|+.|+|++|......+ .+..++ +|++|+|++|.
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 62 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS 62 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC
Confidence 45666666663 34444444557777777766322221 144455 56666666653
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.48 E-value=6.2e-13 Score=160.56 Aligned_cols=177 Identities=22% Similarity=0.288 Sum_probs=115.5
Q ss_pred cccEEEecCCCCCCccccccCCCCCCcEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeC
Q 045458 540 SVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSG 619 (1170)
Q Consensus 540 ~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~ 619 (1170)
+|+.|++++|... .+|..+. ++|++|++++|.+..+| ..+++|+.|++++|.... +|. +.. +|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~-~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCS-CCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCC-ccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 4445555544322 2444332 45666666666666555 345666666666664333 554 333 666666666
Q ss_pred CCCCCCcchhhcCCcccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCcc
Q 045458 620 CSKLKKFPEIVESMEDLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPE 699 (1170)
Q Consensus 620 ~~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~ 699 (1170)
|.... +|. .+++|+.|++++|.++.+|. .+++|+.|++++|.... +|. +. ++|+.|++++|. +..+|.
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~-L~~lp~ 197 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNL-LESLPA 197 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSC-CSSCCC
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCC-CCchhh
Confidence 65443 444 56777777777777777776 56778888888776443 666 54 788888888874 446666
Q ss_pred ccCCCCCC-------cEEEccCccCCCCCccccCCCCCcEEEecCCCCC
Q 045458 700 TLGQVESL-------EELHISGTAIRQPPSGIFHMKNLKALYFRGCKGS 741 (1170)
Q Consensus 700 ~l~~l~~L-------~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~~ 741 (1170)
+.. +| +.|++++|.++.+|..+..+++|+.|+|++|+..
T Consensus 198 -~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 198 -VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp -CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred -HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCC
Confidence 443 66 9999999999999999999999999999998754
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.45 E-value=5.3e-13 Score=148.59 Aligned_cols=168 Identities=20% Similarity=0.278 Sum_probs=94.5
Q ss_pred CCCCcEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEec
Q 045458 562 MECLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFL 641 (1170)
Q Consensus 562 l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l 641 (1170)
+++|+.|+++++.+..++ .+..+++|+.|++++|.... ++. +..+++|+.|++++|.... ++ .+..+++|+.|++
T Consensus 45 l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL 119 (291)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred cCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEEC
Confidence 334444444444444443 24444444444444443222 221 4455555555555544322 22 2555566666666
Q ss_pred cCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCCC
Q 045458 642 DGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQPP 721 (1170)
Q Consensus 642 ~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~lp 721 (1170)
++|.+..+ ..+..+++|+.|++++|..... ..+..+++|+.|++++|.... ++. +..+++|+.|++++|.++.++
T Consensus 120 ~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~-~~~-l~~l~~L~~L~L~~N~i~~l~ 194 (291)
T 1h6t_A 120 EHNGISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHISDLR 194 (291)
T ss_dssp TTSCCCCC-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCBCG
T ss_pred CCCcCCCC-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc-chh-hcCCCccCEEECCCCcCCCCh
Confidence 66666655 3456666666666666654332 345667777777777774433 333 667777778888777777765
Q ss_pred ccccCCCCCcEEEecCCCC
Q 045458 722 SGIFHMKNLKALYFRGCKG 740 (1170)
Q Consensus 722 ~~l~~l~~L~~L~L~~c~~ 740 (1170)
. +..+++|+.|++++|+.
T Consensus 195 ~-l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 195 A-LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp G-GTTCTTCSEEEEEEEEE
T ss_pred h-hccCCCCCEEECcCCcc
Confidence 4 67778888888877753
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.45 E-value=6.2e-13 Score=162.48 Aligned_cols=168 Identities=26% Similarity=0.403 Sum_probs=91.0
Q ss_pred CcccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEc
Q 045458 633 MEDLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHI 712 (1170)
Q Consensus 633 l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L 712 (1170)
+++|+.|++++|.+..++ .+..+++|+.|+|++|......| +..+++|+.|+|++|.. ..++ .+..+++|+.|+|
T Consensus 42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l-~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI-KDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC-CCCT-TSTTCTTCCEEEC
T ss_pred CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC-CCCh-hhccCCCCCEEEe
Confidence 334444444444444443 24455555555555544332222 44555555555555532 2232 4555566666666
Q ss_pred cCccCCCCCccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCC
Q 045458 713 SGTAIRQPPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFI 792 (1170)
Q Consensus 713 ~~~~i~~lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~ 792 (1170)
++|.+..+ ..+..+++|+.|+|++|.... + ..+..+++|+.|+|++|.+.. ..
T Consensus 117 s~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~------------------------l-~~l~~l~~L~~L~Ls~N~l~~-~~ 169 (605)
T 1m9s_A 117 EHNGISDI-NGLVHLPQLESLYLGNNKITD------------------------I-TVLSRLTKLDTLSLEDNQISD-IV 169 (605)
T ss_dssp TTSCCCCC-GGGGGCTTCSEEECCSSCCCC------------------------C-GGGGSCTTCSEEECCSSCCCC-CG
T ss_pred cCCCCCCC-ccccCCCccCEEECCCCccCC------------------------c-hhhcccCCCCEEECcCCcCCC-ch
Confidence 66666554 235566666666666665331 0 224455666666666666642 22
Q ss_pred cCccCCCCCCCEEECcCCCCcccchhhhcCCCCCEeeccCccC
Q 045458 793 PNDIGNLRSLKVLCLSNNSFVSLPASISRLSKLECLNLNGCKK 835 (1170)
Q Consensus 793 ~~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~ 835 (1170)
| +..+++|+.|+|++|.+..+| .+..+++|+.|+|++|+.
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEE
T ss_pred h--hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcC
Confidence 2 666666777777776666664 466666777777766653
No 109
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.44 E-value=5.9e-12 Score=146.49 Aligned_cols=278 Identities=13% Similarity=0.081 Sum_probs=172.6
Q ss_pred cCccccchhhHHHHHHHHcC--CCCCeEEEEEEeCCCccHHHHHHHHHhhhccc------c-CceeEEEecchhhccCCc
Q 045458 27 IKELVGIESRLEKIRFLMGT--GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE------F-DGSSFLADVREKSEKEGS 97 (1170)
Q Consensus 27 ~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~------f-~~~~~~~~~~~~~~~~~~ 97 (1170)
++.++||+.+++++..++.. ..+..+.|.|+|++|+||||+|+.+++..... + ...+...+.... .+.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~ 95 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREV---GGT 95 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHH---CSC
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccC---CCC
Confidence 47899999999999877754 22445789999999999999999999876443 2 222222222221 113
Q ss_pred HHHHHHHHHHHHhhcCCC-ccccchhhHHHHHHhhCCCeEEEEEeCCCCHHH-------HHHhhcCcCCCCCCcEEEEEe
Q 045458 98 VISLQKQLLSNLLKLGDI-SIWHVEDGINIIGSRLRQKKVLLIIDDVADVEQ-------LQSLAGKRDWFGPGSRILITT 169 (1170)
Q Consensus 98 ~~~l~~~ll~~l~~~~~~-~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~~-------l~~l~~~~~~~~~gsrIIiTT 169 (1170)
...+..+++.++...... ......+....+.+.++.++.+|||||++.... +..+... . .+.+||+||
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~---~-~~~~iI~~t 171 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRS---D-ANISVIMIS 171 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTS---S-SCEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcC---C-cceEEEEEE
Confidence 356667777776422111 112234556677777877666999999976532 3333332 2 678999999
Q ss_pred CCchh----hhhh--CCCCccEEECCCCChHHHHHHHHHhhc---CCCCCChhhHHHHHHHHHHhC---CCch-HHHHHH
Q 045458 170 RDKQL----LVAH--EVDEEHILNLDVLNNDEALQLFSMKAF---KTHQPVGEYVELSERVLEYAG---GLPL-ALKVLG 236 (1170)
Q Consensus 170 R~~~v----~~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~---GlPL-al~~l~ 236 (1170)
+.... .... .... .+++++++.++..+++..++. ...... .+....++++++ |.|. |+.++-
T Consensus 172 ~~~~~~~~l~~~l~sr~~~--~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~ 246 (384)
T 2qby_B 172 NDINVRDYMEPRVLSSLGP--SVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLF 246 (384)
T ss_dssp SSTTTTTTSCHHHHHTCCC--EEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCC--eEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 87632 1111 1122 899999999999999998753 222222 245667777777 8887 444433
Q ss_pred Hhh--c-C---CCHHHHHHHHHHhhcCCCchHHHHHHhhccCCChhhhhHhhhhccccc-ccCHHHHHHHHhhCCCCc--
Q 045458 237 SFL--I-G---RTADLWRSALERLKRDPSYKIMSILQISFDGLQGSEKKIFLDVACFFK-RWDRDYVAEILEGCGFSP-- 307 (1170)
Q Consensus 237 ~~L--~-~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~-~~~~~~l~~~~~~~g~~~-- 307 (1170)
... . + -+.+.+..++++.. ...+..+++.|++.++..+..++.... +...+....+...-|..+
T Consensus 247 ~a~~~a~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~ 319 (384)
T 2qby_B 247 RAAQLASGGGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLS 319 (384)
T ss_dssp HHHHHTTSSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHhcCCCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCC
Confidence 222 1 1 26777777776653 245667788999988888887776111 111123333333333222
Q ss_pred ----cchhhhhhcccceeee
Q 045458 308 ----VIGLEVLIERSLLTVD 323 (1170)
Q Consensus 308 ----~~~l~~L~~~sLi~~~ 323 (1170)
...+..|.++++|+..
T Consensus 320 ~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 320 YRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEE
Confidence 2337788899999875
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.42 E-value=2.5e-12 Score=135.62 Aligned_cols=173 Identities=19% Similarity=0.153 Sum_probs=105.2
Q ss_pred CeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCcc
Q 045458 637 SELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTA 716 (1170)
Q Consensus 637 ~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~ 716 (1170)
+.++.+++.++.+|..+ .++|+.|++++|......+..+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 45556666666666544 4577777777776554444456667777777777765443333445667777777777777
Q ss_pred CCCCCcc-ccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCc
Q 045458 717 IRQPPSG-IFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPND 795 (1170)
Q Consensus 717 i~~lp~~-l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~ 795 (1170)
++.++.. +..+++|++|++++|.... ..+..+..+++|+.|++++|.+. +..+..
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------------------~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~ 143 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQS-----------------------LPDGVFDKLTQLKDLRLYQNQLK-SVPDGV 143 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCC-----------------------CCTTTTTTCTTCCEEECCSSCCS-CCCTTT
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcc-----------------------cCHhHhccCCcCCEEECCCCccc-eeCHHH
Confidence 7766554 4566777777776665331 11122456666777777777664 333344
Q ss_pred cCCCCCCCEEECcCCCCcccchhhhcCCCCCEeeccCccCCCcCCC
Q 045458 796 IGNLRSLKVLCLSNNSFVSLPASISRLSKLECLNLNGCKKLQSLPP 841 (1170)
Q Consensus 796 l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~ 841 (1170)
+..+++|+.|++++|.+.. .+++|+.|+++.+.....+|.
T Consensus 144 ~~~l~~L~~L~l~~N~~~~------~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 144 FDRLTSLQYIWLHDNPWDC------TCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp TTTCTTCCEEECCSCCBCC------CTTTTHHHHHHHHHCTTTBBC
T ss_pred hccCCCccEEEecCCCeec------CCCCHHHHHHHHHhCCceeec
Confidence 6667777777777775442 345666666666665555554
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.42 E-value=7.3e-13 Score=138.33 Aligned_cols=152 Identities=24% Similarity=0.310 Sum_probs=99.5
Q ss_pred CCCCCCcEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeE
Q 045458 560 GNMECLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSEL 639 (1170)
Q Consensus 560 ~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L 639 (1170)
+.+++|+.|+++++.+..+| .+..+++|++|++++| ....++ .+..+++|++|++++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~-------------------- 97 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMG-------------------- 97 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEEC--------------------
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeEC--------------------
Confidence 55667777777777777666 5666666666666666 223232 444555555555555
Q ss_pred eccCcCCCc-cCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCC
Q 045458 640 FLDGTSITE-VPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIR 718 (1170)
Q Consensus 640 ~l~~~~l~~-lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~ 718 (1170)
|.+.. .+..+..+++|+.|++++|......|..+..+++|+.|++++|..+..++ .+..+++|+.|++++|.++
T Consensus 98 ----n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 98 ----KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp ----TTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC
T ss_pred ----CccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc
Confidence 44442 44555666666666666666655556666677777777777776555555 5677788888888888888
Q ss_pred CCCccccCCCCCcEEEecCCCC
Q 045458 719 QPPSGIFHMKNLKALYFRGCKG 740 (1170)
Q Consensus 719 ~lp~~l~~l~~L~~L~L~~c~~ 740 (1170)
.++ .+..+++|++|++++|+.
T Consensus 173 ~~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 173 DYR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CCT-TGGGCSSCCEEEECBC--
T ss_pred ChH-HhccCCCCCEEEeeCccc
Confidence 776 677788888888888763
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.42 E-value=2.9e-13 Score=141.35 Aligned_cols=128 Identities=18% Similarity=0.189 Sum_probs=51.9
Q ss_pred CCCCCCcEEEcCCCCCCCcCCCCCCCCCccEEEeeccCCcccccccccCCCCccEEEeeCCCCCCccCcccc-CCcccEE
Q 045458 466 KSLNMLKVMKVSYSQSLIKIPDFTGVPNLEKLYLEGCTRLREIHPSLLLHSKLVILNLTGCTSLATLPGKIF-MKSVKKL 544 (1170)
Q Consensus 466 ~~l~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L 544 (1170)
..+++|+.|++++| ....++.+..+++|++|++++|......+..+..+++|+.|++++|......+..+. +++|++|
T Consensus 63 ~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L 141 (197)
T 4ezg_A 63 EYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141 (197)
T ss_dssp GGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEE
T ss_pred hcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEE
Confidence 33444444444444 233333444444444444444433323334444444444444444332222222222 3333444
Q ss_pred EecCCCCCCccccccCCCCCCcEEEecCccCCccCcchhcCCCCCEEeccCC
Q 045458 545 VLSGCSKLKKFPKIVGNMECLSKLLLDGTAIGELPLSIELLSKLVSLDLNNC 596 (1170)
Q Consensus 545 ~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~ 596 (1170)
++++|.....+| .+..+++|++|++++|.+..++ .+..+++|+.|++++|
T Consensus 142 ~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 142 DLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp ECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC
T ss_pred EccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCc
Confidence 443333222232 2444444444444444444443 3444444444444444
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.40 E-value=1.6e-15 Score=184.27 Aligned_cols=216 Identities=16% Similarity=0.126 Sum_probs=136.9
Q ss_pred CCCCCCcEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeE
Q 045458 560 GNMECLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSEL 639 (1170)
Q Consensus 560 ~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L 639 (1170)
...++|+.|++++|.++.+|..++.+++|+.|++++|..+..+|..+ ..+......|..++.+++|+.|
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L~~L 414 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTLKAV 414 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhcccC
Confidence 55678888889999999999999999999999986654222222110 1112234456666667777766
Q ss_pred e-ccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCC
Q 045458 640 F-LDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIR 718 (1170)
Q Consensus 640 ~-l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~ 718 (1170)
+ ++.+.+..++. +.+.+|. +..+|. ..|+.|++++|. +..+|. ++.+++|+.|++++|.++
T Consensus 415 ~~l~~n~~~~L~~----------l~l~~n~-i~~l~~-----~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~ 476 (567)
T 1dce_A 415 DPMRAAYLDDLRS----------KFLLENS-VLKMEY-----ADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLR 476 (567)
T ss_dssp CGGGHHHHHHHHH----------HHHHHHH-HHHHHH-----TTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCC
T ss_pred cchhhcccchhhh----------hhhhccc-ccccCc-----cCceEEEecCCC-CCCCcC-ccccccCcEeecCccccc
Confidence 6 44443332221 1122211 111111 135666666663 334554 666777777777777777
Q ss_pred CCCccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCC-cCccC
Q 045458 719 QPPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFI-PNDIG 797 (1170)
Q Consensus 719 ~lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~-~~~l~ 797 (1170)
.+|..+..+++|+.|+|++|.... +| .+..+++|+.|+|++|.+.. .. |..++
T Consensus 477 ~lp~~~~~l~~L~~L~Ls~N~l~~------------------------lp-~l~~l~~L~~L~Ls~N~l~~-~~~p~~l~ 530 (567)
T 1dce_A 477 ALPPALAALRCLEVLQASDNALEN------------------------VD-GVANLPRLQELLLCNNRLQQ-SAAIQPLV 530 (567)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCC------------------------CG-GGTTCSSCCEEECCSSCCCS-SSTTGGGG
T ss_pred ccchhhhcCCCCCEEECCCCCCCC------------------------Cc-ccCCCCCCcEEECCCCCCCC-CCCcHHHh
Confidence 777777777777777777766331 23 46677788888888888753 33 77888
Q ss_pred CCCCCCEEECcCCCCcccchhh----hcCCCCCEeec
Q 045458 798 NLRSLKVLCLSNNSFVSLPASI----SRLSKLECLNL 830 (1170)
Q Consensus 798 ~l~sL~~L~Ls~n~l~~lp~~i----~~l~~L~~L~L 830 (1170)
.+++|+.|+|++|.++.+|..+ ..+|+|+.|++
T Consensus 531 ~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 531 SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 8888888888888888776533 34778877754
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.40 E-value=5.3e-13 Score=146.17 Aligned_cols=167 Identities=23% Similarity=0.300 Sum_probs=123.1
Q ss_pred CcccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEc
Q 045458 633 MEDLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHI 712 (1170)
Q Consensus 633 l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L 712 (1170)
+.++..++++++.+++++ .+..+++|+.|++++|. +..++ .+..+++|+.|++++|.. ..++. +..+++|+.|++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~i-~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQI-SDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCC-CCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCcc-CCChh-hccCCCCCEEEC
Confidence 445666667777777766 56777788888887774 34455 566778888888887743 44444 777888888888
Q ss_pred cCccCCCCCccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCC
Q 045458 713 SGTAIRQPPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFI 792 (1170)
Q Consensus 713 ~~~~i~~lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~ 792 (1170)
++|.++.+|.... ++|++|++++|.... + +.+..+++|+.|++++|++.. +
T Consensus 93 ~~N~l~~l~~~~~--~~L~~L~L~~N~l~~------------------------~-~~l~~l~~L~~L~Ls~N~i~~--~ 143 (263)
T 1xeu_A 93 NRNRLKNLNGIPS--ACLSRLFLDNNELRD------------------------T-DSLIHLKNLEILSIRNNKLKS--I 143 (263)
T ss_dssp CSSCCSCCTTCCC--SSCCEEECCSSCCSB------------------------S-GGGTTCTTCCEEECTTSCCCB--C
T ss_pred CCCccCCcCcccc--CcccEEEccCCccCC------------------------C-hhhcCcccccEEECCCCcCCC--C
Confidence 8888887765444 888888888876432 1 236678888999999988854 3
Q ss_pred cCccCCCCCCCEEECcCCCCcccchhhhcCCCCCEeeccCccC
Q 045458 793 PNDIGNLRSLKVLCLSNNSFVSLPASISRLSKLECLNLNGCKK 835 (1170)
Q Consensus 793 ~~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~ 835 (1170)
+ .+..+++|+.|++++|.++.+ ..+..+++|+.|++++|+.
T Consensus 144 ~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 144 V-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp G-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEE
T ss_pred h-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcc
Confidence 4 578888999999999988887 5678888899999988763
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.39 E-value=1.3e-12 Score=159.61 Aligned_cols=166 Identities=16% Similarity=0.179 Sum_probs=111.4
Q ss_pred CceEEEcCCCCCCCCCCCCCCCceeEEEccCCChHHHhhcCCCCCCCcEEEcCCCCCCCcCCCCCCCCCccEEEeeccCC
Q 045458 425 KLRLLDWPGYPLKSLPPNLQLDKTIEFKMLCSRIEELWKGIKSLNMLKVMKVSYSQSLIKIPDFTGVPNLEKLYLEGCTR 504 (1170)
Q Consensus 425 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~s~i~~L~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~ 504 (1170)
+|++|+++++.+..+|....+.+|+.|+|++|.+..++. +..+++|+.|+|++|. +..+|.+..+++|++|+|++|..
T Consensus 44 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l 121 (605)
T 1m9s_A 44 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSLSLEHNGI 121 (605)
T ss_dssp TCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCTTSTTCTTCCEEECTTSCC
T ss_pred CCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCChhhccCCCCCEEEecCCCC
Confidence 577777777777777754477888888888888777765 7778888888888876 45567788888888888887643
Q ss_pred cccccccccCCCCccEEEeeCCCCCCccCccccCCcccEEEecCCCCCCccccccCCCCCCcEEEecCccCCccCcchhc
Q 045458 505 LREIHPSLLLHSKLVILNLTGCTSLATLPGKIFMKSVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTAIGELPLSIEL 584 (1170)
Q Consensus 505 l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~ 584 (1170)
..+ +.+..+++|+.|+|++|. +..++....+++|+.|+|++|......| +..+++|+.|+|++|.+..++ .+..
T Consensus 122 -~~l-~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~ 195 (605)
T 1m9s_A 122 -SDI-NGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-ALAG 195 (605)
T ss_dssp -CCC-GGGGGCTTCSEEECCSSC-CCCCGGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GGTT
T ss_pred -CCC-ccccCCCccCEEECCCCc-cCCchhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh-HHcc
Confidence 333 456777777777777754 3333332336666666666665444333 666666666666666666654 4556
Q ss_pred CCCCCEEeccCCCC
Q 045458 585 LSKLVSLDLNNCKN 598 (1170)
Q Consensus 585 l~~L~~L~L~~~~~ 598 (1170)
+++|+.|+|++|..
T Consensus 196 l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 196 LKNLDVLELFSQEC 209 (605)
T ss_dssp CTTCSEEECCSEEE
T ss_pred CCCCCEEEccCCcC
Confidence 66666666666543
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.38 E-value=3.1e-12 Score=134.82 Aligned_cols=160 Identities=18% Similarity=0.112 Sum_probs=78.1
Q ss_pred CCcccEEEecCCCCCCccccccCCCCCCcEEEecCccCCccCcc-hhcCCCCCEEeccCCCCCCcCccccCCCCcccEEE
Q 045458 538 MKSVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTAIGELPLS-IELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLV 616 (1170)
Q Consensus 538 l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ 616 (1170)
.++|++|++++|......+..++++++|++|++++|.+..++.. +..+++|++|++++|......+..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 34555566655544433334455566666666666666555443 34455555555555543322222344444555555
Q ss_pred eeCCCCCCCcchhhcCCcccCeEeccCcCCCccCcc-ccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCC
Q 045458 617 LSGCSKLKKFPEIVESMEDLSELFLDGTSITEVPSS-IELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLE 695 (1170)
Q Consensus 617 L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~ 695 (1170)
+++ |.+..++.. +..+++|+.|++++|......+..+..+++|+.|++++|...
T Consensus 107 L~~------------------------N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~- 161 (208)
T 2o6s_A 107 LNT------------------------NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD- 161 (208)
T ss_dssp CCS------------------------SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-
T ss_pred cCC------------------------CcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-
Confidence 544 444444332 344455555555554433322333445555555555555322
Q ss_pred CCccccCCCCCCcEEEccCccCC-CCCccccCCC
Q 045458 696 NVPETLGQVESLEELHISGTAIR-QPPSGIFHMK 728 (1170)
Q Consensus 696 ~l~~~l~~l~~L~~L~L~~~~i~-~lp~~l~~l~ 728 (1170)
+.+++|+.|++..|.++ .+|..++.++
T Consensus 162 ------~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 162 ------CTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp ------CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred ------cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 23345566666655555 4455554443
No 117
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.37 E-value=1.3e-11 Score=143.72 Aligned_cols=287 Identities=12% Similarity=0.053 Sum_probs=169.4
Q ss_pred CCCccCccccchhhHHHHHHHHcCC--CCCeEEEEEEeCCCccHHHHHHHHHhhhcccc-----CceeEEEecchhhccC
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTG--SSDVRMIGIWGMGGLGKTTLARVVYDSMSYEF-----DGSSFLADVREKSEKE 95 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f-----~~~~~~~~~~~~~~~~ 95 (1170)
+...++.++||+.+++++..++... ....+.+.|+|++|+||||+|+.+++...... ...+...+... .
T Consensus 14 ~~~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~ 89 (387)
T 2v1u_A 14 PDYVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH----R 89 (387)
T ss_dssp TTCCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT----S
T ss_pred CccCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc----C
Confidence 3445688999999999999988542 34457899999999999999999998764432 22222222221 2
Q ss_pred CcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhh--CCCeEEEEEeCCCCHHH-------HHHhhcCcCCC--CCCcE
Q 045458 96 GSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRL--RQKKVLLIIDDVADVEQ-------LQSLAGKRDWF--GPGSR 164 (1170)
Q Consensus 96 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L--~~k~~LlVLDdv~~~~~-------l~~l~~~~~~~--~~gsr 164 (1170)
.....+...++..+............+....+.+.+ .+++.+||||+++.... +..+....... ..+..
T Consensus 90 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~ 169 (387)
T 2v1u_A 90 ETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVS 169 (387)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CE
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEE
Confidence 223566677777764322111222344455666666 35689999999986532 22222221111 45678
Q ss_pred EEEEeCCchhh----hhh-CCCCccEEECCCCChHHHHHHHHHhhc---CCCCCChhhHHHHHHHHHHhC---CCch-HH
Q 045458 165 ILITTRDKQLL----VAH-EVDEEHILNLDVLNNDEALQLFSMKAF---KTHQPVGEYVELSERVLEYAG---GLPL-AL 232 (1170)
Q Consensus 165 IIiTTR~~~v~----~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~---GlPL-al 232 (1170)
+|+||+..... ... ..-....+.+++++.++..+++...+. ...... .+....++++++ |.|- |+
T Consensus 170 ~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~ 246 (387)
T 2v1u_A 170 LVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRAL 246 (387)
T ss_dssp EEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHH
T ss_pred EEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHH
Confidence 88888876321 111 011113799999999999999988753 222212 235667888887 9994 33
Q ss_pred HHHHHhh---c--C---CCHHHHHHHHHHhhcCCCchHHHHHHhhccCCChhhhhHhhhhcccccc---cCHHHH----H
Q 045458 233 KVLGSFL---I--G---RTADLWRSALERLKRDPSYKIMSILQISFDGLQGSEKKIFLDVACFFKR---WDRDYV----A 297 (1170)
Q Consensus 233 ~~l~~~L---~--~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~---~~~~~l----~ 297 (1170)
.++.... . + -+.+.+..+++... ...+.-++..|++.++..+..++....+ +....+ .
T Consensus 247 ~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~ 319 (387)
T 2v1u_A 247 DLLRVAGEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYK 319 (387)
T ss_dssp HHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 3322221 1 1 15667777766542 2346667889999999888888754333 222322 2
Q ss_pred HHHhhCCCCc------cchhhhhhcccceeee
Q 045458 298 EILEGCGFSP------VIGLEVLIERSLLTVD 323 (1170)
Q Consensus 298 ~~~~~~g~~~------~~~l~~L~~~sLi~~~ 323 (1170)
.+....|..+ ...++.|...++++..
T Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 320 ELTSTLGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 2223333222 1236777888888774
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.37 E-value=7.2e-12 Score=133.15 Aligned_cols=101 Identities=22% Similarity=0.328 Sum_probs=66.8
Q ss_pred CeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCcc
Q 045458 637 SELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTA 716 (1170)
Q Consensus 637 ~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~ 716 (1170)
+.++++++.++++|..+. ++|+.|++++|......+..+..+++|+.|++++|......|..+..+++|+.|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 456777777777777553 677888888776555555567777777777777776555556667777777777777777
Q ss_pred CCCCCccc-cCCCCCcEEEecCCC
Q 045458 717 IRQPPSGI-FHMKNLKALYFRGCK 739 (1170)
Q Consensus 717 i~~lp~~l-~~l~~L~~L~L~~c~ 739 (1170)
++.+|... ..+++|++|+|++|.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~ 115 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANK 115 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCHhHccCCCCCCEEECCCCC
Confidence 77665542 345555555555544
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.36 E-value=4.2e-12 Score=146.14 Aligned_cols=171 Identities=22% Similarity=0.210 Sum_probs=111.7
Q ss_pred CeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCC-CCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCc
Q 045458 637 SELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSIN-GLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGT 715 (1170)
Q Consensus 637 ~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~-~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~ 715 (1170)
+.++++++.+..+|..+. ..++.|+|++|......+..+. .+++|+.|+|++|......+..+..+++|+.|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 456666777777776543 4577777777765554445555 6777777777777555444556777777888888777
Q ss_pred cCCCCCc-cccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcC
Q 045458 716 AIRQPPS-GIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPN 794 (1170)
Q Consensus 716 ~i~~lp~-~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~ 794 (1170)
.++.++. .+..+++|++|+|++|.... ..|..+..+++|+.|+|++|.+.. +|.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~-----------------------~~~~~~~~l~~L~~L~L~~N~l~~--l~~ 153 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVV-----------------------VDRNAFEDMAQLQKLYLSQNQISR--FPV 153 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCE-----------------------ECTTTTTTCTTCCEEECCSSCCCS--CCG
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccE-----------------------ECHHHhCCcccCCEEECCCCcCCe--eCH
Confidence 7776654 35667777777777766331 223456677777777877777743 443
Q ss_pred c-c---CCCCCCCEEECcCCCCcccc-hhhhcCCC--CCEeeccCcc
Q 045458 795 D-I---GNLRSLKVLCLSNNSFVSLP-ASISRLSK--LECLNLNGCK 834 (1170)
Q Consensus 795 ~-l---~~l~sL~~L~Ls~n~l~~lp-~~i~~l~~--L~~L~L~~c~ 834 (1170)
. + ..+++|+.|+|++|+++.+| ..+..++. |+.|+|.+|+
T Consensus 154 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp GGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred HHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 3 2 55777888888888877777 34566665 3667777655
No 120
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.36 E-value=1.2e-11 Score=132.35 Aligned_cols=150 Identities=23% Similarity=0.248 Sum_probs=84.1
Q ss_pred cCeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCc
Q 045458 636 LSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGT 715 (1170)
Q Consensus 636 L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~ 715 (1170)
.+.++.+++.+..+|..+. ++|+.|++++|......|..+..+++|+.|+|++|......+..+..+++|+.|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4456666666666665432 55666666655554444444555555555555554332222223344444444444444
Q ss_pred cCCCCCccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCc
Q 045458 716 AIRQPPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPND 795 (1170)
Q Consensus 716 ~i~~lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~ 795 (1170)
.++.++.. .+..+++|+.|+|++|++. .+|..
T Consensus 99 ~l~~l~~~----------------------------------------------~~~~l~~L~~L~Ls~N~l~--~lp~~ 130 (229)
T 3e6j_A 99 QLTVLPSA----------------------------------------------VFDRLVHLKELFMCCNKLT--ELPRG 130 (229)
T ss_dssp CCCCCCTT----------------------------------------------TTTTCTTCCEEECCSSCCC--SCCTT
T ss_pred cCCccChh----------------------------------------------HhCcchhhCeEeccCCccc--ccCcc
Confidence 44433322 2445666666666666664 36666
Q ss_pred cCCCCCCCEEECcCCCCcccch-hhhcCCCCCEeeccCccC
Q 045458 796 IGNLRSLKVLCLSNNSFVSLPA-SISRLSKLECLNLNGCKK 835 (1170)
Q Consensus 796 l~~l~sL~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~ 835 (1170)
+..+++|+.|+|++|+++.+|. .+..+++|+.|++.+|+.
T Consensus 131 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 131 IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp GGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred cccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 6777777777777777776663 456677777777777653
No 121
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.35 E-value=9e-12 Score=144.98 Aligned_cols=289 Identities=15% Similarity=0.097 Sum_probs=166.9
Q ss_pred CCCccCccccchhhHHHHHHHHcCC--CCCeEEEEEEeCCCccHHHHHHHHHhhhccccC--c-eeEEEecchhhccCCc
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTG--SSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFD--G-SSFLADVREKSEKEGS 97 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~--~-~~~~~~~~~~~~~~~~ 97 (1170)
+...++.|+||+.+++++.+++... ....+.+.|+|++|+||||||+.+++.....+. . .+++. .... ..
T Consensus 15 ~~~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~-~~~~----~~ 89 (386)
T 2qby_A 15 PDYIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN-TRQI----DT 89 (386)
T ss_dssp SSCCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE-HHHH----CS
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE-CCCC----CC
Confidence 3445688999999999999988742 344578999999999999999999998766542 2 23333 2211 12
Q ss_pred HHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhC--CCeEEEEEeCCCCHH------HHHHhhcCcCC-CCCCcEEEEE
Q 045458 98 VISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLR--QKKVLLIIDDVADVE------QLQSLAGKRDW-FGPGSRILIT 168 (1170)
Q Consensus 98 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~--~k~~LlVLDdv~~~~------~l~~l~~~~~~-~~~gsrIIiT 168 (1170)
...+...++..+............+..+.+.+.+. +++.+||||+++... .+..+...... ...+..+|+|
T Consensus 90 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~ 169 (386)
T 2qby_A 90 PYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGI 169 (386)
T ss_dssp HHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEE
Confidence 23444455444421111111123333455555554 458999999986532 23333322211 1345678888
Q ss_pred eCCchhhhhhC-----CCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhC---CCchHHHHHHHhh-
Q 045458 169 TRDKQLLVAHE-----VDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAG---GLPLALKVLGSFL- 239 (1170)
Q Consensus 169 TR~~~v~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~---GlPLal~~l~~~L- 239 (1170)
|++........ .-....+.+++++.++..+++...+...........+....++++++ |.|..+..+....
T Consensus 170 ~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~ 249 (386)
T 2qby_A 170 TNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSG 249 (386)
T ss_dssp ESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 88764321110 01113899999999999999987653111111223355667777777 9998444332221
Q ss_pred c-----C---CCHHHHHHHHHHhhcCCCchHHHHHHhhccCCChhhhhHhhhhccccc-c---cCHHHH----HHHHhhC
Q 045458 240 I-----G---RTADLWRSALERLKRDPSYKIMSILQISFDGLQGSEKKIFLDVACFFK-R---WDRDYV----AEILEGC 303 (1170)
Q Consensus 240 ~-----~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~-~---~~~~~l----~~~~~~~ 303 (1170)
. + -+.+.++.+++... ...+...+.+++..++.++..++...+ + +....+ ..+....
T Consensus 250 ~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~ 322 (386)
T 2qby_A 250 EIAERMKDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKL 322 (386)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhc
Confidence 1 1 15566666665542 245667788999999998888885432 2 223222 2222222
Q ss_pred CCCc------cchhhhhhcccceeee
Q 045458 304 GFSP------VIGLEVLIERSLLTVD 323 (1170)
Q Consensus 304 g~~~------~~~l~~L~~~sLi~~~ 323 (1170)
|..+ ...++.|.+.++|+..
T Consensus 323 g~~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 323 GVEAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 3222 2347788888888764
No 122
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.34 E-value=9.5e-12 Score=132.21 Aligned_cols=148 Identities=21% Similarity=0.277 Sum_probs=80.7
Q ss_pred cEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcC
Q 045458 566 SKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTS 645 (1170)
Q Consensus 566 ~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 645 (1170)
+.++++++.+..+|..+. ++|+.|++++|......+..+..+++|+.|+|++|......|..+..+++|+.|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 345666666666665443 566666666665444334456666666666666665554445555556666666666666
Q ss_pred CCccCcc-ccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCCCcc-
Q 045458 646 ITEVPSS-IELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQPPSG- 723 (1170)
Q Consensus 646 l~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~lp~~- 723 (1170)
+..+|.. +..+++|+.|++++|.... ..+..+..+++|+.|++++|.++.++..
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~------------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 147 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINC------------------------LRVDAFQDLHNLNLLSLYDNKLQTIAKGT 147 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCC------------------------CCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCE------------------------eCHHHcCCCCCCCEEECCCCcCCEECHHH
Confidence 6555543 2444444444444444333 3344444455555555555555554432
Q ss_pred ccCCCCCcEEEecCCC
Q 045458 724 IFHMKNLKALYFRGCK 739 (1170)
Q Consensus 724 l~~l~~L~~L~L~~c~ 739 (1170)
+..+++|++|++++|+
T Consensus 148 ~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 148 FSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred HhCCCCCCEEEeCCCC
Confidence 4445556666665554
No 123
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.32 E-value=1.6e-11 Score=130.33 Aligned_cols=101 Identities=15% Similarity=0.193 Sum_probs=54.7
Q ss_pred CeEeccCcCCCccCccccCCCCCCEEeccCCcCCcccc-ccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCc
Q 045458 637 SELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIP-DSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGT 715 (1170)
Q Consensus 637 ~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~ 715 (1170)
+.++++++.++++|..+ ...++.|++++|......+ ..+..+++|+.|++++|......+..+..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 45666666666666544 2345666666665443323 23455666666666665443333345555666666666666
Q ss_pred cCCCCCcc-ccCCCCCcEEEecCCC
Q 045458 716 AIRQPPSG-IFHMKNLKALYFRGCK 739 (1170)
Q Consensus 716 ~i~~lp~~-l~~l~~L~~L~L~~c~ 739 (1170)
.++.++.. +..+++|++|+|++|.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~ 116 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNR 116 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCc
Confidence 66555433 3444444444444443
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.31 E-value=1.7e-14 Score=175.25 Aligned_cols=192 Identities=17% Similarity=0.151 Sum_probs=102.9
Q ss_pred CCCceeEEEccCCChHHHhhcCCCCCCCcEEEcCCCCCCCcCCCCCCCCCccEEEeeccCCcccccccccCCCCccEEE-
Q 045458 444 QLDKTIEFKMLCSRIEELWKGIKSLNMLKVMKVSYSQSLIKIPDFTGVPNLEKLYLEGCTRLREIHPSLLLHSKLVILN- 522 (1170)
Q Consensus 444 ~l~~L~~L~L~~s~i~~L~~~l~~l~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~- 522 (1170)
..++|+.|+|+.|.++.+|..+..|++|+.|+++++..+..+|. .+..+......|..++.+++|+.|+
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~----------ll~~~~~~~~~~~~l~~l~~L~~L~~ 416 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL----------LMRALDPLLYEKETLQYFSTLKAVDP 416 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH----------HHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHH----------HHHhcccccCCHHHHHHHHhcccCcc
Confidence 46788889999999999999999999999999876542111110 0011122334455566666666665
Q ss_pred eeCCCCCCccCcc---------ccCCcccEEEecCCCCCCccccccCCCCCCcEEEecCccCCccCcchhcCCCCCEEec
Q 045458 523 LTGCTSLATLPGK---------IFMKSVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTAIGELPLSIELLSKLVSLDL 593 (1170)
Q Consensus 523 L~~c~~l~~lp~~---------~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L 593 (1170)
++. +.+..++.. +....|+.|++++|.. ..+|. ++++++|+.|++++|.+..+|..++.+++|+.|+|
T Consensus 417 l~~-n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l-~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L 493 (567)
T 1dce_A 417 MRA-AYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL-TVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA 493 (567)
T ss_dssp GGH-HHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCC-SSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEEC
T ss_pred hhh-cccchhhhhhhhcccccccCccCceEEEecCCCC-CCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEEC
Confidence 222 111111110 0122455566655533 23444 55556666666666666655555555556666655
Q ss_pred cCCCCCCcCccccCCCCcccEEEeeCCCCCCCc-chhhcCCcccCeEeccCcCCCccC
Q 045458 594 NNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKF-PEIVESMEDLSELFLDGTSITEVP 650 (1170)
Q Consensus 594 ~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~-p~~~~~l~~L~~L~l~~~~l~~lp 650 (1170)
++|.... +| .++.+++|+.|+|++|...... |..+..+++|+.|++++|.+..+|
T Consensus 494 s~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 494 SDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp CSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred CCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 5554332 44 4555555555555554433332 444444444444444444444433
No 125
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.31 E-value=2.4e-11 Score=129.99 Aligned_cols=148 Identities=20% Similarity=0.237 Sum_probs=72.2
Q ss_pred cEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcC
Q 045458 566 SKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTS 645 (1170)
Q Consensus 566 ~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 645 (1170)
+.++.+++.+..+|..+. ++|+.|++++|......|..+..+++|+.|+|++|......+..+..+++|+.|++++|.
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 445555566666665432 555555555555444444445555555555555544322222333444444444444444
Q ss_pred CCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCCCc-cc
Q 045458 646 ITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQPPS-GI 724 (1170)
Q Consensus 646 l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~lp~-~l 724 (1170)
+..++. ..+..+++|+.|++++|. +..+|..+..+++|+.|++++|.++.++. .+
T Consensus 100 l~~l~~-----------------------~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~ 155 (229)
T 3e6j_A 100 LTVLPS-----------------------AVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAF 155 (229)
T ss_dssp CCCCCT-----------------------TTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTT
T ss_pred CCccCh-----------------------hHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHH
Confidence 443332 233444444455554442 22444444555555555555555555543 24
Q ss_pred cCCCCCcEEEecCCC
Q 045458 725 FHMKNLKALYFRGCK 739 (1170)
Q Consensus 725 ~~l~~L~~L~L~~c~ 739 (1170)
..+++|+.|++.+|+
T Consensus 156 ~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 156 DRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTCTTCCEEECTTSC
T ss_pred hCCCCCCEEEeeCCC
Confidence 445555555555554
No 126
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.31 E-value=4.3e-11 Score=139.41 Aligned_cols=309 Identities=13% Similarity=0.107 Sum_probs=178.2
Q ss_pred CCccCccccchhhHHHHHHHHcC----CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccC-ceeEEEecchhhccCCcH
Q 045458 24 PETIKELVGIESRLEKIRFLMGT----GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFD-GSSFLADVREKSEKEGSV 98 (1170)
Q Consensus 24 ~~~~~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~ 98 (1170)
...++.++||+.+++++..++.. ..+..+.+.|+|++|+||||+|+.+++....... ..+++. .. .....
T Consensus 13 ~~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~-~~----~~~~~ 87 (389)
T 1fnn_A 13 SYVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN-GF----IYRNF 87 (389)
T ss_dssp TCCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE-TT----TCCSH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe-Cc----cCCCH
Confidence 33457899999999999888864 2223348999999999999999999988765421 223333 21 11222
Q ss_pred HHHHHHHHHHHhhcCCCccccchhhHHHHHHhhC--CCeEEEEEeCCCCH--HHHHHhhcCcCCCC----CCcEEEEEeC
Q 045458 99 ISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLR--QKKVLLIIDDVADV--EQLQSLAGKRDWFG----PGSRILITTR 170 (1170)
Q Consensus 99 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~--~k~~LlVLDdv~~~--~~l~~l~~~~~~~~----~gsrIIiTTR 170 (1170)
..+...++..+............+..+.+.+.+. +++.+||||+++.. +.+..+........ .+..||+||+
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~ 167 (389)
T 1fnn_A 88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGH 167 (389)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEES
T ss_pred HHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEEC
Confidence 5566666666542211111223344445555443 56899999999764 44555543332211 4678888888
Q ss_pred CchhhhhhC-----CCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHh---------CCCchHHHHHH
Q 045458 171 DKQLLVAHE-----VDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYA---------GGLPLALKVLG 236 (1170)
Q Consensus 171 ~~~v~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~---------~GlPLal~~l~ 236 (1170)
+........ .-....+.+++++.++..+++...+........-..+....+++++ +|.|..+..+.
T Consensus 168 ~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l 247 (389)
T 1fnn_A 168 NDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDIL 247 (389)
T ss_dssp STHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHH
T ss_pred CchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHH
Confidence 764322110 0011269999999999999998875321111122345678889999 78876554443
Q ss_pred Hhhc------CC---CHHHHHHHHHHhhcCCCchHHHHHHhhccCCChhhhhHhhhhcccc---c--ccCHHHHHHHH--
Q 045458 237 SFLI------GR---TADLWRSALERLKRDPSYKIMSILQISFDGLQGSEKKIFLDVACFF---K--RWDRDYVAEIL-- 300 (1170)
Q Consensus 237 ~~L~------~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~---~--~~~~~~l~~~~-- 300 (1170)
.... +. +.+....+.+..... . +.-.+..|+..++.++..++.+. . ......+.+.+
T Consensus 248 ~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~---~----~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~ 320 (389)
T 1fnn_A 248 YRSAYAAQQNGRKHIAPEDVRKSSKEVLFG---I----SEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKI 320 (389)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHHSCC---C----CHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHhhh---h----HHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHH
Confidence 3221 11 334444444433211 1 12234567888888888777654 2 23444443332
Q ss_pred --hhCCCCc------cchhhhhhcccceeeeCC-------Cce-------echHHHHHHHHHHHhc
Q 045458 301 --EGCGFSP------VIGLEVLIERSLLTVDED-------NTL-------GMHDLLQELGQLIVAR 344 (1170)
Q Consensus 301 --~~~g~~~------~~~l~~L~~~sLi~~~~~-------~~~-------~mH~li~~~~~~i~~~ 344 (1170)
...|..+ ...++.|.++++|..... +++ ..|++++.+...+..+
T Consensus 321 ~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~ 386 (389)
T 1fnn_A 321 VCEEYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKE 386 (389)
T ss_dssp HHHHTTCCCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHH
Confidence 2233222 134888999999988533 221 2566666666555544
No 127
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.30 E-value=3.3e-12 Score=139.79 Aligned_cols=166 Identities=19% Similarity=0.262 Sum_probs=90.5
Q ss_pred CCcccEEEecCCCCCCccccccCCCCCCcEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEe
Q 045458 538 MKSVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVL 617 (1170)
Q Consensus 538 l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L 617 (1170)
+.++..++++++... .++ .+..+++|++|+++++.+..++ .+..+++|+.|++++|... .++
T Consensus 18 l~~l~~l~l~~~~i~-~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~-~~~-------------- 79 (263)
T 1xeu_A 18 LANAVKQNLGKQSVT-DLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQIS-DLS-------------- 79 (263)
T ss_dssp HHHHHHHHHTCSCTT-SEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC-CCG--------------
T ss_pred HHHHHHHHhcCCCcc-ccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccC-CCh--------------
Confidence 444455555554322 222 3445555555555555555555 4455555555555554322 222
Q ss_pred eCCCCCCCcchhhcCCcccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCC
Q 045458 618 SGCSKLKKFPEIVESMEDLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENV 697 (1170)
Q Consensus 618 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l 697 (1170)
. +..+++|+.|++++|.+..+|.... ++|+.|++++|.... ++ .+..+++|+.|++++|.. ..+
T Consensus 80 ----------~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i-~~~ 143 (263)
T 1xeu_A 80 ----------P-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKL-KSI 143 (263)
T ss_dssp ----------G-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCC-CBC
T ss_pred ----------h-hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcC-CCC
Confidence 2 4445555555555555555443322 566666666654332 22 355666666666666643 333
Q ss_pred ccccCCCCCCcEEEccCccCCCCCccccCCCCCcEEEecCCC
Q 045458 698 PETLGQVESLEELHISGTAIRQPPSGIFHMKNLKALYFRGCK 739 (1170)
Q Consensus 698 ~~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~ 739 (1170)
+ .+..+++|+.|++++|.++.+ ..+..+++|+.|++++|+
T Consensus 144 ~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 144 V-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp G-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred h-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence 3 456667777777777777766 556677777777777765
No 128
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.29 E-value=2.2e-11 Score=129.41 Aligned_cols=63 Identities=19% Similarity=0.195 Sum_probs=27.7
Q ss_pred CCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCC-CccccCCCCCcEEEecCCC
Q 045458 677 INGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQP-PSGIFHMKNLKALYFRGCK 739 (1170)
Q Consensus 677 l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~c~ 739 (1170)
+..+++|++|++++|......|..+..+++|+.|++++|.++.+ |..+..+++|++|++++|+
T Consensus 101 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 101 FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 33344444444444433333333444444444444444444444 3344445555555555444
No 129
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.28 E-value=1.4e-11 Score=141.83 Aligned_cols=171 Identities=21% Similarity=0.192 Sum_probs=119.4
Q ss_pred cEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccC-CCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCc
Q 045458 566 SKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTIS-SLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGT 644 (1170)
Q Consensus 566 ~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~-~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~ 644 (1170)
+.++++++.+..+|..+. ..++.|+|++|......+..+. .+++|+.|+|++|......+..+..+++|+.|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 355666666666665442 3466677776654444444455 6777777777777665555566777778888888888
Q ss_pred CCCccCc-cccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCcccc----CCCCCCcEEEccCccCCC
Q 045458 645 SITEVPS-SIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETL----GQVESLEELHISGTAIRQ 719 (1170)
Q Consensus 645 ~l~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l----~~l~~L~~L~L~~~~i~~ 719 (1170)
.+..++. .+..+++|+.|+|++|......|..+..+++|+.|+|++|... .+|... ..+++|+.|++++|.++.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 8877655 4677888888888888776666777888888888888888544 454443 568899999999999988
Q ss_pred CCc-cccCCCC--CcEEEecCCC
Q 045458 720 PPS-GIFHMKN--LKALYFRGCK 739 (1170)
Q Consensus 720 lp~-~l~~l~~--L~~L~L~~c~ 739 (1170)
+|. .+..+++ |+.|+|.+|+
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSC
T ss_pred cCHHHhhhccHhhcceEEecCCC
Confidence 874 4556665 4778888876
No 130
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.24 E-value=5.2e-11 Score=128.75 Aligned_cols=203 Identities=16% Similarity=0.139 Sum_probs=122.2
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHH
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQ 102 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 102 (1170)
.|...+.++||+..++.|..++..+. ..+.+.|+|++|+||||+|+.+++.....+..... . .......
T Consensus 18 ~p~~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~-~--------~~~~~~~- 86 (250)
T 1njg_A 18 RPQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT-P--------CGVCDNC- 86 (250)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSS-C--------CSCSHHH-
T ss_pred CCccHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC-C--------CcccHHH-
Confidence 45556789999999999999987542 23578999999999999999999876543211000 0 0000000
Q ss_pred HHHHHHH----hhcCCCccccchhhHHHHHHh-----hCCCeEEEEEeCCCC--HHHHHHhhcCcCCCCCCcEEEEEeCC
Q 045458 103 KQLLSNL----LKLGDISIWHVEDGINIIGSR-----LRQKKVLLIIDDVAD--VEQLQSLAGKRDWFGPGSRILITTRD 171 (1170)
Q Consensus 103 ~~ll~~l----~~~~~~~~~~~~~~~~~i~~~-----L~~k~~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIIiTTR~ 171 (1170)
..+.... ....... ....+....+.+. ..+++.+||+||++. ...++.+...+.....+.++|+||+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~ 165 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 165 (250)
T ss_dssp HHHHTTCCSSEEEEETTC-GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESC
T ss_pred HHHhccCCcceEEecCcc-cccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCC
Confidence 0000000 0000000 0001111122222 134679999999965 44555555444444567889999977
Q ss_pred chhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHHHHhh
Q 045458 172 KQLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVLGSFL 239 (1170)
Q Consensus 172 ~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L 239 (1170)
.......-......+++++++.+|..+++...+...... ...+....++++++|+|..+..+...+
T Consensus 166 ~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 166 PQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 542221111223489999999999999999877543222 223567889999999999988776543
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.21 E-value=2.3e-11 Score=123.25 Aligned_cols=129 Identities=21% Similarity=0.184 Sum_probs=71.9
Q ss_pred CCCEEEeeCcCCC-CCCccccCCCCCCcEEEccCccCCCCCccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccC
Q 045458 682 SLQSLNLSGCFKL-ENVPETLGQVESLEELHISGTAIRQPPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSL 760 (1170)
Q Consensus 682 ~L~~L~L~~c~~l-~~l~~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~ 760 (1170)
+|+.|++++|... ..+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|....
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~------------------ 85 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFG------------------ 85 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCS------------------
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCch------------------
Confidence 3444444444322 23333334444444444444444444 444445555555555554321
Q ss_pred CCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCcccch----hhhcCCCCCEeeccCcc
Q 045458 761 DPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVSLPA----SISRLSKLECLNLNGCK 834 (1170)
Q Consensus 761 ~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~lp~----~i~~l~~L~~L~L~~c~ 834 (1170)
.+|..+..+++|+.|++++|.+..-..+..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|+
T Consensus 86 -----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 86 -----GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp -----CCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred -----HHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 1222233456677777777766431122567778888888888888887775 67778888888888765
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.20 E-value=1.6e-11 Score=121.73 Aligned_cols=128 Identities=20% Similarity=0.165 Sum_probs=78.0
Q ss_pred CCCCEEEeeCcCCC-CCCccccCCCCCCcEEEccCccCCCCCccccCCCCCcEEEecCCCCCCCCCCcccCccccccccc
Q 045458 681 KSLQSLNLSGCFKL-ENVPETLGQVESLEELHISGTAIRQPPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRS 759 (1170)
Q Consensus 681 ~~L~~L~L~~c~~l-~~l~~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~ 759 (1170)
++|+.|++++|... ..+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|....
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~----------------- 78 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSG----------------- 78 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCS-----------------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccc-----------------
Confidence 44555555555433 24444445555555555555555555 445556666666666655321
Q ss_pred CCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCcccch----hhhcCCCCCEeeccC
Q 045458 760 LDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVSLPA----SISRLSKLECLNLNG 832 (1170)
Q Consensus 760 ~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~lp~----~i~~l~~L~~L~L~~ 832 (1170)
.+|..+..+++|+.|++++|.+..-..+..+..+++|+.|++++|.++.+|. .+..+++|+.|++++
T Consensus 79 ------~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 79 ------GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ------CTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ------hHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 1222234466777777777777431223667888888888888888887775 577888888888763
No 133
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.19 E-value=1.9e-10 Score=122.43 Aligned_cols=192 Identities=12% Similarity=0.140 Sum_probs=118.2
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHH
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQ 102 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 102 (1170)
.|....+++|++..++++.+++.... .+.+.|+|++|+|||++|+.+++.+........++. +.. . .... ....
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~-~~~-~-~~~~-~~~~ 85 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIE-MNA-S-DERG-IDVV 85 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEE-EET-T-CTTC-HHHH
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEE-ecc-c-cccC-hHHH
Confidence 45556789999999999999997643 234899999999999999999987643322222222 111 1 1111 1111
Q ss_pred HHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCCchhhhhhCC
Q 045458 103 KQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRDKQLLVAHEV 180 (1170)
Q Consensus 103 ~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~~ 180 (1170)
...+....... ..-..++.+||+||++.. ...+.+.........+.++|+||+........-.
T Consensus 86 ~~~~~~~~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~ 150 (226)
T 2chg_A 86 RHKIKEFARTA---------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ 150 (226)
T ss_dssp HHHHHHHHTSC---------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHhccc---------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHH
Confidence 11222211000 011357889999999764 3344444433334567889999987642211111
Q ss_pred CCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHHHH
Q 045458 181 DEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVLGS 237 (1170)
Q Consensus 181 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~ 237 (1170)
.....+++++++.++..+++...+...... ...+....+++.++|.|..+..+..
T Consensus 151 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 151 SRCAVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhCceeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 222379999999999999998876432221 2235677888999999986655443
No 134
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.15 E-value=1.2e-10 Score=117.97 Aligned_cols=104 Identities=21% Similarity=0.324 Sum_probs=56.4
Q ss_pred CCCcEEEecCccCC--ccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEe
Q 045458 563 ECLSKLLLDGTAIG--ELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELF 640 (1170)
Q Consensus 563 ~~L~~L~L~~~~i~--~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~ 640 (1170)
++|++|+++++.+. .+|..+..+++|+.|++++|.... + ..+..+++|+.|++++|.....+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555554 555555555566666665555322 2 3555666666666666655544555555555666666
Q ss_pred ccCcCCCccC--ccccCCCCCCEEeccCCc
Q 045458 641 LDGTSITEVP--SSIELLTGLNVLNLNDCK 668 (1170)
Q Consensus 641 l~~~~l~~lp--~~i~~l~~L~~L~L~~~~ 668 (1170)
+++|.+..+| ..+..+++|+.|++++|.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~ 131 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCE 131 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCc
Confidence 6666555544 344444444444444443
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.14 E-value=1.8e-11 Score=153.47 Aligned_cols=112 Identities=21% Similarity=0.167 Sum_probs=61.2
Q ss_pred chhhcCCcccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCC
Q 045458 627 PEIVESMEDLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVES 706 (1170)
Q Consensus 627 p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~ 706 (1170)
+..+..+++|+.|+|++|.+..+|..+..+++|+.|+|++|... .+|..+..+++|+.|+|++|... .+|..++.+++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTT
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCC
Confidence 33344444444444445555555555555555555555555433 45555555555555555555433 55555666666
Q ss_pred CcEEEccCccCCCCCccccCCCCCcEEEecCCCC
Q 045458 707 LEELHISGTAIRQPPSGIFHMKNLKALYFRGCKG 740 (1170)
Q Consensus 707 L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~ 740 (1170)
|+.|+|++|.++.+|..+..+++|++|+|++|..
T Consensus 295 L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 295 LKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred CCEEECCCCCCCccChhhhcCCCccEEeCCCCcc
Confidence 6666666666666666666666666666666654
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.12 E-value=1.1e-11 Score=155.50 Aligned_cols=154 Identities=18% Similarity=0.098 Sum_probs=87.0
Q ss_pred ccccccCCCCCCcEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCC
Q 045458 554 KFPKIVGNMECLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESM 633 (1170)
Q Consensus 554 ~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l 633 (1170)
..+..+..+..|+.|+|++|.+..+|..+..+++|+.|+|++|... .+|..+..+++|+.|+|++|... .+|..+..+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 3455566666666666766666666666666667777777666544 56666666667777777766644 556666677
Q ss_pred cccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCC-CCCEEEeeCcCCCCCCccccCCCCCCcEEEc
Q 045458 634 EDLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLK-SLQSLNLSGCFKLENVPETLGQVESLEELHI 712 (1170)
Q Consensus 634 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~-~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L 712 (1170)
++|+.|+|++|.+..+|..++.+++|+.|+|++|.....+|..+..+. .+..|++++|.....+|. .|+.|++
T Consensus 293 ~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l 366 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEI 366 (727)
T ss_dssp TTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C------
T ss_pred CCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEe
Confidence 777777777777777777777777777777777766666555443221 112245555554444442 3445555
Q ss_pred cCc
Q 045458 713 SGT 715 (1170)
Q Consensus 713 ~~~ 715 (1170)
+.+
T Consensus 367 ~~n 369 (727)
T 4b8c_D 367 NTD 369 (727)
T ss_dssp ---
T ss_pred ecc
Confidence 544
No 137
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.10 E-value=4.9e-10 Score=126.75 Aligned_cols=191 Identities=16% Similarity=0.249 Sum_probs=115.9
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccc-cCceeEEEecchhhccCCcHHHH
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE-FDGSSFLADVREKSEKEGSVISL 101 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l 101 (1170)
.|...++++|++..++.+.+++..+. .+.+.|+|++|+||||+|+.+++.+... +...+...+. .... . ...
T Consensus 16 ~p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~---~~~~-~-~~~ 88 (323)
T 1sxj_B 16 RPQVLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA---SDDR-G-IDV 88 (323)
T ss_dssp CCSSGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT---TSCC-S-HHH
T ss_pred CCCCHHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC---cccc-C-hHH
Confidence 45556789999999999999997643 2338999999999999999999876432 2211111111 1111 1 111
Q ss_pred HHHHHHHHhhcCCCccccchhhHHHHHHhh-CCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCCchhhhhh
Q 045458 102 QKQLLSNLLKLGDISIWHVEDGINIIGSRL-RQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRDKQLLVAH 178 (1170)
Q Consensus 102 ~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L-~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~ 178 (1170)
..+++..+.... ..+ .+++.++|+||++.. ...+.+........+++++|+||+...-....
T Consensus 89 i~~~~~~~~~~~---------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~ 153 (323)
T 1sxj_B 89 VRNQIKHFAQKK---------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEP 153 (323)
T ss_dssp HHTHHHHHHHBC---------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred HHHHHHHHHhcc---------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhH
Confidence 122222221000 011 346889999999763 33444443333335678899988775421111
Q ss_pred CCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchH-HHHHHH
Q 045458 179 EVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLA-LKVLGS 237 (1170)
Q Consensus 179 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa-l~~l~~ 237 (1170)
-......+++++++.++..+++...+...... ...+.+..++++++|.|.. +..+..
T Consensus 154 l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 154 LQSQCAILRYSKLSDEDVLKRLLQIIKLEDVK--YTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhhceEEeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 11222489999999999999998876432211 2235678899999999954 444433
No 138
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.10 E-value=1.4e-10 Score=114.95 Aligned_cols=122 Identities=21% Similarity=0.242 Sum_probs=56.6
Q ss_pred CcEEEecCccCC--ccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEecc
Q 045458 565 LSKLLLDGTAIG--ELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLD 642 (1170)
Q Consensus 565 L~~L~L~~~~i~--~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~ 642 (1170)
|+.|+++++.+. .+|..+..+++|+.|++++|..... ..+..+++|+.|++++|.....+|..+..+++|+.|+++
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 334444444433 3333334444444444444432221 244455555555555555444455555555555555555
Q ss_pred CcCCCccC--ccccCCCCCCEEeccCCcCCcccc---ccCCCCCCCCEEEe
Q 045458 643 GTSITEVP--SSIELLTGLNVLNLNDCKNLVRIP---DSINGLKSLQSLNL 688 (1170)
Q Consensus 643 ~~~l~~lp--~~i~~l~~L~~L~L~~~~~l~~lp---~~l~~l~~L~~L~L 688 (1170)
+|.+..++ ..+..+++|+.|++++|......+ ..+..+++|+.|++
T Consensus 97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 55555543 445555555555555554322221 13444444554444
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.07 E-value=2e-10 Score=117.29 Aligned_cols=61 Identities=26% Similarity=0.425 Sum_probs=36.6
Q ss_pred CCCCCcCEEeccCCCCCCCCCcC--ccCCCCCCCEEECcCCCCcccchh----hhcCCCCCEeeccCcc
Q 045458 772 SGLYSLTKLDLSDCDLGEGFIPN--DIGNLRSLKVLCLSNNSFVSLPAS----ISRLSKLECLNLNGCK 834 (1170)
Q Consensus 772 ~~l~~L~~L~Ls~c~l~~~~~~~--~l~~l~sL~~L~Ls~n~l~~lp~~----i~~l~~L~~L~L~~c~ 834 (1170)
..+++|+.|++++|.+.. +|. .+..+++|+.|++++|.+..+|.. +..+++|+.|++++|+
T Consensus 85 ~~l~~L~~L~L~~N~i~~--~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 85 QALPDLTELILTNNSLVE--LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHCTTCCEEECCSCCCCC--GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hcCCCCCEEECCCCcCCc--chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 445556666666666532 443 556666666666666666666653 5666666666666543
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.06 E-value=1.3e-09 Score=112.87 Aligned_cols=123 Identities=24% Similarity=0.309 Sum_probs=89.8
Q ss_pred EEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCCCccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCc
Q 045458 685 SLNLSGCFKLENVPETLGQVESLEELHISGTAIRQPPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVA 764 (1170)
Q Consensus 685 ~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~ 764 (1170)
.++++++ .+..+|..+. ++|+.|++++|.++.+|..+..+++|++|+|++|....
T Consensus 14 ~l~~~~~-~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~---------------------- 68 (193)
T 2wfh_A 14 VVRCSNK-GLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIST---------------------- 68 (193)
T ss_dssp EEECTTS-CCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCC----------------------
T ss_pred EEEcCCC-CCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCE----------------------
Confidence 4555444 2344554432 57788888888888888777888888888888876432
Q ss_pred ccCCCCCCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCcccch-hhhcCCCCCEeeccCcc
Q 045458 765 FSFPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVSLPA-SISRLSKLECLNLNGCK 834 (1170)
Q Consensus 765 ~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~ 834 (1170)
..+..+..+++|+.|+|++|.+. ...+..+..+++|+.|+|++|.++.+|. .+..+++|+.|+|++|+
T Consensus 69 -i~~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 69 -LSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp -CCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred -eCHhHccCCCCCCEEECCCCccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 12334677888888888888884 4455678888999999999999888886 47788888888888865
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.00 E-value=1.7e-09 Score=111.96 Aligned_cols=124 Identities=27% Similarity=0.276 Sum_probs=61.1
Q ss_pred cEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCcc-ccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCc
Q 045458 566 SKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPV-TISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGT 644 (1170)
Q Consensus 566 ~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~ 644 (1170)
+.++++++.++.+|..+.. +|+.|++++|......+. .+..+++|+.|++++|......|..+..+++|+.|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 4455555555555544322 555555555543222221 2445555555555555544444455555555555555555
Q ss_pred CCCccCcc-ccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCc
Q 045458 645 SITEVPSS-IELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGC 691 (1170)
Q Consensus 645 ~l~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c 691 (1170)
.+..++.. +..+++|+.|++++|......|..+..+++|+.|++++|
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 55544332 444555555555555444444444444444544444444
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.99 E-value=7.3e-10 Score=125.65 Aligned_cols=215 Identities=13% Similarity=0.109 Sum_probs=129.5
Q ss_pred CCCccEEEeeCCCCCCccCcccc--CCcccEEEecCCCCCCccccccCCCCCCcEEEecCcc----CCcc-CcchhcCCC
Q 045458 515 HSKLVILNLTGCTSLATLPGKIF--MKSVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTA----IGEL-PLSIELLSK 587 (1170)
Q Consensus 515 l~~L~~L~L~~c~~l~~lp~~~~--l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~----i~~l-~~~i~~l~~ 587 (1170)
+++|+.|.+.+ .++.++...+ +++|+.|++.++.....-+..|.++.++..+....+. ...+ ...+..+..
T Consensus 100 ~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 56666666655 3444444333 5666666666555444444455554444444433311 1111 112233444
Q ss_pred CC-EEeccCCCCCCcC-ccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCCccCcc-ccCCCCCCEEec
Q 045458 588 LV-SLDLNNCKNFKNL-PVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSITEVPSS-IELLTGLNVLNL 664 (1170)
Q Consensus 588 L~-~L~L~~~~~l~~l-p~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~L 664 (1170)
|+ .+.+.....+... ...-....+++.+.+.+.-....+......+++|+.+++.+|.++.+|.. +..+++|+.+++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 44 3333332211110 01112345666777766432222222233478999999999999988764 788999999999
Q ss_pred cCCcCCcccc-ccCCCCCCCC-EEEeeCcCCCCCC-ccccCCCCCCcEEEccCccCCCCCc-cccCCCCCcEEEe
Q 045458 665 NDCKNLVRIP-DSINGLKSLQ-SLNLSGCFKLENV-PETLGQVESLEELHISGTAIRQPPS-GIFHMKNLKALYF 735 (1170)
Q Consensus 665 ~~~~~l~~lp-~~l~~l~~L~-~L~L~~c~~l~~l-~~~l~~l~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L 735 (1170)
.++ +..++ ..|.++++|+ .+.+.+ .+..+ +..+..+++|+.|+++++.++.++. .+..+++|+.++.
T Consensus 258 ~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 258 PHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred Ccc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 886 55555 4578899999 999987 44444 4678889999999999999998866 5667889998864
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.98 E-value=5.5e-09 Score=106.63 Aligned_cols=42 Identities=24% Similarity=0.266 Sum_probs=21.0
Q ss_pred CCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCcc
Q 045458 772 SGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVS 814 (1170)
Q Consensus 772 ~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~ 814 (1170)
..+++|+.|++++|.+. +..+..+..+++|+.|++++|.+..
T Consensus 97 ~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 97 DKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeec
Confidence 34455555555555553 2222234555556666666655543
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.97 E-value=9.5e-10 Score=124.67 Aligned_cols=253 Identities=15% Similarity=0.139 Sum_probs=117.6
Q ss_pred CCCccEEeecCcccC--Cchh-cccCCceEEEcCCCCCCCCCCCC--C--------CCceeEEEccCCChHHHhh-cCCC
Q 045458 402 MTNLRLLGICNLKLP--EGLE-CLSNKLRLLDWPGYPLKSLPPNL--Q--------LDKTIEFKMLCSRIEELWK-GIKS 467 (1170)
Q Consensus 402 ~~~Lr~L~l~~~~l~--~~~~-~l~~~Lr~L~l~~~~l~~lp~~~--~--------l~~L~~L~L~~s~i~~L~~-~l~~ 467 (1170)
+++|+.|+++++++. .+.. .++. ++++.+..+ .+|... . +.+|+.++++. .++.++. .+..
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~-~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPN-GKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGG-GCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTT
T ss_pred hccCeEEecCcceeEEecCccccccc-ccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhc
Confidence 566777777776654 1111 1221 333433333 344433 4 56666666666 6665543 3566
Q ss_pred CCCCcEEEcCCCCCCCcCCC-CCCCCCccEEEeeccC---Cccc-ccccccCCCCcc-EEEeeCCCCCCccC--ccccCC
Q 045458 468 LNMLKVMKVSYSQSLIKIPD-FTGVPNLEKLYLEGCT---RLRE-IHPSLLLHSKLV-ILNLTGCTSLATLP--GKIFMK 539 (1170)
Q Consensus 468 l~~L~~L~Ls~~~~l~~~~~-~~~l~~L~~L~L~~~~---~l~~-~~~~i~~l~~L~-~L~L~~c~~l~~lp--~~~~l~ 539 (1170)
|++|+.|+++.+......+. |..+.++..+.+.... .... -...+..+..|+ .+.+.....+.... ..+...
T Consensus 123 ~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~ 202 (329)
T 3sb4_A 123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPR 202 (329)
T ss_dssp CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGG
T ss_pred CcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcc
Confidence 66666666666553322222 5555555554443210 0000 011222333443 33333222111110 011144
Q ss_pred cccEEEecCCCCCCccccccCCCCCCcEEEecCccCCccCc-chhcCCCCCEEeccCCCCCCcCc-cccCCCCccc-EEE
Q 045458 540 SVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTAIGELPL-SIELLSKLVSLDLNNCKNFKNLP-VTISSLKCLR-SLV 616 (1170)
Q Consensus 540 ~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~i~~l~~-~i~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~-~L~ 616 (1170)
+++.+.+.+.-....+......+++|+.+++.+|.+..++. .+..+++|+.|++.++ +..++ ..+..+.+|+ .+.
T Consensus 203 ~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~ 280 (329)
T 3sb4_A 203 DINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLE 280 (329)
T ss_dssp GCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEE
T ss_pred ccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEE
Confidence 55555555542222222122235667777777766666664 3566666666666654 33332 3455666666 666
Q ss_pred eeCCCCCCCcchhhcCCcccCeEeccCcCCCccCc-cccCCCCCCEE
Q 045458 617 LSGCSKLKKFPEIVESMEDLSELFLDGTSITEVPS-SIELLTGLNVL 662 (1170)
Q Consensus 617 L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L 662 (1170)
+.+ .....-+..+.++++|+.+++.++.+..++. .+..+++|+.+
T Consensus 281 l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 281 LPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp ECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred Ecc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 655 2222223445555555555555555554443 23334444433
No 145
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.97 E-value=4e-09 Score=109.18 Aligned_cols=107 Identities=25% Similarity=0.320 Sum_probs=87.3
Q ss_pred cccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEcc
Q 045458 634 EDLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHIS 713 (1170)
Q Consensus 634 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~ 713 (1170)
++|+.|++++|.+..+|..+..+++|+.|++++|......+..+.++++|++|+|++|......+..+..+++|+.|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 46777777778888888888888888888888887766666778888899999998887666666778888999999999
Q ss_pred CccCCCCCcc-ccCCCCCcEEEecCCCC
Q 045458 714 GTAIRQPPSG-IFHMKNLKALYFRGCKG 740 (1170)
Q Consensus 714 ~~~i~~lp~~-l~~l~~L~~L~L~~c~~ 740 (1170)
+|.++.+|.. +..+++|+.|++++|+.
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 9999988774 66789999999998763
No 146
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.96 E-value=3.6e-09 Score=109.54 Aligned_cols=107 Identities=23% Similarity=0.266 Sum_probs=69.8
Q ss_pred CCcEEEecCccCCccCcc--hhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEec
Q 045458 564 CLSKLLLDGTAIGELPLS--IELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFL 641 (1170)
Q Consensus 564 ~L~~L~L~~~~i~~l~~~--i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l 641 (1170)
+|++|++++|.+..++.. +..+++|++|++++|......|..+..+++|+.|+|++|......+..+..+++|+.|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 556666666666555542 566666666666666655555666666666777777666665555555666777777777
Q ss_pred cCcCCCcc-CccccCCCCCCEEeccCCcCC
Q 045458 642 DGTSITEV-PSSIELLTGLNVLNLNDCKNL 670 (1170)
Q Consensus 642 ~~~~l~~l-p~~i~~l~~L~~L~L~~~~~l 670 (1170)
++|.+..+ |..+..+++|+.|++++|...
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 77777754 556777777777777777654
No 147
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.95 E-value=1.2e-09 Score=111.48 Aligned_cols=106 Identities=21% Similarity=0.212 Sum_probs=52.1
Q ss_pred CCCCCcEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEe
Q 045458 561 NMECLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELF 640 (1170)
Q Consensus 561 ~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~ 640 (1170)
++.+|+.|++++|.+..+|......++|+.|++++|.... + ..+..+++|+.|++++|......+..+..+++|+.|+
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 3445555555555555554322222355555555554332 2 2455555555555555543322223335555555555
Q ss_pred ccCcCCCccCc--cccCCCCCCEEeccCCc
Q 045458 641 LDGTSITEVPS--SIELLTGLNVLNLNDCK 668 (1170)
Q Consensus 641 l~~~~l~~lp~--~i~~l~~L~~L~L~~~~ 668 (1170)
+++|.+..+|. .+..+++|+.|++++|.
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRNP 124 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCCC
Confidence 55555555554 44555555555555544
No 148
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.93 E-value=4.8e-09 Score=118.73 Aligned_cols=193 Identities=15% Similarity=0.184 Sum_probs=117.1
Q ss_pred cCCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE-ecchhhccCCcHHH
Q 045458 22 TEPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA-DVREKSEKEGSVIS 100 (1170)
Q Consensus 22 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~ 100 (1170)
..|...++++|++..++.+..++..+ ..+.+.|+|++|+||||+|+.+++.+........++. +...... ..
T Consensus 19 ~~p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~-----~~ 91 (327)
T 1iqp_A 19 YRPQRLDDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERG-----IN 91 (327)
T ss_dssp TCCCSTTTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHH-----HH
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCc-----hH
Confidence 34555678999999999999998764 3334899999999999999999987643211111221 1111000 00
Q ss_pred HHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCCchhhhhh
Q 045458 101 LQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRDKQLLVAH 178 (1170)
Q Consensus 101 l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~ 178 (1170)
...+.+....... ....+++.++|+||++.. +..+.+.........++++|+||+........
T Consensus 92 ~~~~~~~~~~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~ 156 (327)
T 1iqp_A 92 VIREKVKEFARTK---------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEP 156 (327)
T ss_dssp TTHHHHHHHHHSC---------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred HHHHHHHHHHhhC---------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHH
Confidence 0011111110000 011256789999999754 44555544444445678999998765421111
Q ss_pred CCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHHHHh
Q 045458 179 EVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVLGSF 238 (1170)
Q Consensus 179 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~ 238 (1170)
-......+++++++.++..+++...+..... ....+....+++.++|.|..+..+...
T Consensus 157 l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 157 IQSRCAIFRFRPLRDEDIAKRLRYIAENEGL--ELTEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp HHHTEEEEECCCCCHHHHHHHHHHHHHTTTC--EECHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhhCcEEEecCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 0111237999999999999999887643322 123456788999999999876554443
No 149
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.90 E-value=1e-08 Score=104.59 Aligned_cols=100 Identities=20% Similarity=0.257 Sum_probs=48.7
Q ss_pred cEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcC
Q 045458 566 SKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTS 645 (1170)
Q Consensus 566 ~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 645 (1170)
+.++++++++..+|..+ .++|+.|++++|......+..+..+++|++|++++|......+..+..+++|+.|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 45556666666665433 2456666666655433233334555555555555554433333334445555555555555
Q ss_pred CCccCcc-ccCCCCCCEEeccCC
Q 045458 646 ITEVPSS-IELLTGLNVLNLNDC 667 (1170)
Q Consensus 646 l~~lp~~-i~~l~~L~~L~L~~~ 667 (1170)
+..+|.. +..+++|+.|++++|
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N 110 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTN 110 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS
T ss_pred ccccCHHHhhCCcccCEEECcCC
Confidence 5444432 233444444444444
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.79 E-value=9e-11 Score=122.45 Aligned_cols=119 Identities=17% Similarity=0.162 Sum_probs=78.3
Q ss_pred CCccccccCCCCCCcEEEecCccCCccCcchhcCCCCCEEeccCCCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhc
Q 045458 552 LKKFPKIVGNMECLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVE 631 (1170)
Q Consensus 552 ~~~l~~~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~ 631 (1170)
+..+|..++.+++|++|++++|.+..+| .+..+++|+.|++++|... .+|..+..+++|+.|++++|.... +| .+.
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~ 112 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIE 112 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHH
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccc
Confidence 4445556777777788888777777777 7777777777777777533 556555556677777777764433 44 466
Q ss_pred CCcccCeEeccCcCCCccCc--cccCCCCCCEEeccCCcCCcccc
Q 045458 632 SMEDLSELFLDGTSITEVPS--SIELLTGLNVLNLNDCKNLVRIP 674 (1170)
Q Consensus 632 ~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~L~~~~~l~~lp 674 (1170)
.+++|+.|++++|.+..++. .+..+++|+.|++++|......|
T Consensus 113 ~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 66777777777777766553 55666666666666665444333
No 151
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.79 E-value=2.7e-11 Score=126.51 Aligned_cols=57 Identities=32% Similarity=0.398 Sum_probs=25.1
Q ss_pred CCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCcccch--hhhcCCCCCEeeccCcc
Q 045458 775 YSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVSLPA--SISRLSKLECLNLNGCK 834 (1170)
Q Consensus 775 ~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~lp~--~i~~l~~L~~L~L~~c~ 834 (1170)
++|+.|++++|.+.. +| .+..+++|+.|++++|.++.+|. .+..+++|+.|++++|+
T Consensus 93 ~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 93 DTLEELWISYNQIAS--LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHCSEEEEEEEECCC--HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CcCCEEECcCCcCCc--CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 344444444444422 22 34444444444444444444332 34444445555554443
No 152
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.77 E-value=6.6e-08 Score=109.17 Aligned_cols=260 Identities=19% Similarity=0.139 Sum_probs=146.5
Q ss_pred CCCccCccccchhhHHHHHHHHcCC---CCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHH
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTG---SSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVI 99 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 99 (1170)
.|...+++||++..++++..++... ....+.|.|+|++|+|||++|+++++.....| .++. .... ....
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~-~~~~----~~~~ 78 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTS-GPAI----EKPG 78 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEEC-TTTC----CSHH
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEe-cccc----CChH
Confidence 3455678999999999988877531 12335788999999999999999998764322 1221 1110 0001
Q ss_pred HHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH--HHHHhhcCcCC------------------C
Q 045458 100 SLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVE--QLQSLAGKRDW------------------F 159 (1170)
Q Consensus 100 ~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~--~l~~l~~~~~~------------------~ 159 (1170)
++... +...+ .++.+|+||+++... ..+.+...+.. .
T Consensus 79 ----~l~~~------------------l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~ 135 (324)
T 1hqc_A 79 ----DLAAI------------------LANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLE 135 (324)
T ss_dssp ----HHHHH------------------HTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEE
T ss_pred ----HHHHH------------------HHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccC
Confidence 11111 11111 345689999997642 22222211110 0
Q ss_pred CCCcEEEEEeCCchhhhhhCCCCc-cEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHHHHh
Q 045458 160 GPGSRILITTRDKQLLVAHEVDEE-HILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVLGSF 238 (1170)
Q Consensus 160 ~~gsrIIiTTR~~~v~~~~~~~~~-~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~ 238 (1170)
.++.++|.||.........-.... ..+.+++++.+|..+++...+...... -..+....+++++.|.|-.+..+...
T Consensus 136 ~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l~~ 213 (324)
T 1hqc_A 136 LPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR--ITEEAALEIGRRSRGTMRVAKRLFRR 213 (324)
T ss_dssp CCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHSCSCHHHHHHHHHH
T ss_pred CCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHccCCHHHHHHHHHH
Confidence 134677777765432211111111 389999999999999998877543222 22466788999999999888776554
Q ss_pred hcC------C---CHHHHHHHHHHhhcCCCchHHHHHHhhccCCChhhhhHhhhhccccc--ccCHHHHHHHHhhCCCCc
Q 045458 239 LIG------R---TADLWRSALERLKRDPSYKIMSILQISFDGLQGSEKKIFLDVACFFK--RWDRDYVAEILEGCGFSP 307 (1170)
Q Consensus 239 L~~------~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~--~~~~~~l~~~~~~~g~~~ 307 (1170)
+.. . +.+....++..+ ...+..+++.++..+..++.... .+....+++.+.-.-...
T Consensus 214 ~~~~a~~~~~~~i~~~~~~~~~~~~------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl 281 (324)
T 1hqc_A 214 VRDFAQVAGEEVITRERALEALAAL------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTL 281 (324)
T ss_dssp HTTTSTTTSCSCCCHHHHHHHHHHH------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHh------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHH
Confidence 421 1 233333333322 23345677777777776664432 244555555442110000
Q ss_pred cchhhh-hhcccceeeeCCCc
Q 045458 308 VIGLEV-LIERSLLTVDEDNT 327 (1170)
Q Consensus 308 ~~~l~~-L~~~sLi~~~~~~~ 327 (1170)
...++. +++.++|.....++
T Consensus 282 ~~~l~~~~i~~~li~~~~~g~ 302 (324)
T 1hqc_A 282 EEVHEPYLIRQGLLKRTPRGR 302 (324)
T ss_dssp HHHTHHHHHHTTSEEEETTEE
T ss_pred HHHHhHHHHHhcchhcCCccc
Confidence 111333 77888888765444
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.74 E-value=5.2e-08 Score=98.53 Aligned_cols=102 Identities=25% Similarity=0.326 Sum_probs=73.2
Q ss_pred CcEEEccCccCCCCCccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCC
Q 045458 707 LEELHISGTAIRQPPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCD 786 (1170)
Q Consensus 707 L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~ 786 (1170)
.+.++++++.++.+|..+. ++|++|+|++|.... ..|..+..+++|+.|+|++|+
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~-----------------------~~~~~~~~l~~L~~L~Ls~N~ 65 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITK-----------------------LEPGVFDRLTQLTRLDLDNNQ 65 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCC-----------------------CCTTTTTTCTTCSEEECCSSC
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCc-----------------------cChhhhcCcccCCEEECCCCC
Confidence 4567777777777776553 677777777766432 224456777888888888888
Q ss_pred CCCCCCcCccCCCCCCCEEECcCCCCcccch-hhhcCCCCCEeeccCcc
Q 045458 787 LGEGFIPNDIGNLRSLKVLCLSNNSFVSLPA-SISRLSKLECLNLNGCK 834 (1170)
Q Consensus 787 l~~~~~~~~l~~l~sL~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~ 834 (1170)
+. +..+..+..+++|+.|+|++|+++.+|. .+..+++|+.|+|++|+
T Consensus 66 l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 66 LT-VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cC-ccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 74 3444556788888888888888888776 47788888888888875
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.73 E-value=6.2e-08 Score=98.32 Aligned_cols=101 Identities=19% Similarity=0.257 Sum_probs=69.8
Q ss_pred cEEEccCccCCCCCccccCCCCCcEEEecCCCCCCCCCCcccCcccccccccCCCCcccCCCCCCCCCCcCEEeccCCCC
Q 045458 708 EELHISGTAIRQPPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLIKRSLDPVAFSFPPSLSGLYSLTKLDLSDCDL 787 (1170)
Q Consensus 708 ~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l 787 (1170)
+.++++++.++.+|..+. ++|++|+|++|.... ..|..+..+++|+.|+|++|++
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~-----------------------~~~~~~~~l~~L~~L~Ls~N~l 69 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITK-----------------------LEPGVFDHLVNLQQLYFNSNKL 69 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCC-----------------------CCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccc-----------------------cCHHHhcCCcCCCEEECCCCCC
Confidence 556667777777766553 677777777765432 2234566777788888888877
Q ss_pred CCCCCcCccCCCCCCCEEECcCCCCcccchh-hhcCCCCCEeeccCcc
Q 045458 788 GEGFIPNDIGNLRSLKVLCLSNNSFVSLPAS-ISRLSKLECLNLNGCK 834 (1170)
Q Consensus 788 ~~~~~~~~l~~l~sL~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~ 834 (1170)
.. ..+..+..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 70 ~~-i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 70 TA-IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred Cc-cChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCC
Confidence 43 3333457788888888888888887764 7778888888888765
No 155
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.68 E-value=1.1e-07 Score=107.00 Aligned_cols=187 Identities=11% Similarity=0.122 Sum_probs=115.5
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhcc-ccCceeEEEecchhhccCCcHHHH
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSY-EFDGSSFLADVREKSEKEGSVISL 101 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l 101 (1170)
.|...++++|++..++.+.+++..+ ..+.+.|+|++|+|||++|+.+++.+.. .+...+...+....... ..+...
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~ 88 (319)
T 2chq_A 12 RPRTLDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI-DVVRHK 88 (319)
T ss_dssp SCSSGGGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCT-TTSSHH
T ss_pred CCCCHHHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccCh-HHHHHH
Confidence 3445578999999999999988764 3334899999999999999999987632 22111111111111000 000111
Q ss_pred HHHHHHHHhhcCCCccccchhhHHHHHHh--h-CCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCCchhhh
Q 045458 102 QKQLLSNLLKLGDISIWHVEDGINIIGSR--L-RQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRDKQLLV 176 (1170)
Q Consensus 102 ~~~ll~~l~~~~~~~~~~~~~~~~~i~~~--L-~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~ 176 (1170)
...+... + .+++.++|+|+++.. +..+.+........++.++|+||....-..
T Consensus 89 ----------------------~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~ 146 (319)
T 2chq_A 89 ----------------------IKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRII 146 (319)
T ss_dssp ----------------------HHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSC
T ss_pred ----------------------HHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcc
Confidence 1111100 1 256789999999754 445666665555567788888887654211
Q ss_pred hhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHHH
Q 045458 177 AHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVLG 236 (1170)
Q Consensus 177 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~ 236 (1170)
..-......+++.+++.++..+++...+...... -..+....+++.++|.+..+....
T Consensus 147 ~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 147 EPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp HHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCC--BCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred hHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1111222389999999999999998877433322 233567788889999988655443
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.68 E-value=1e-07 Score=96.39 Aligned_cols=105 Identities=20% Similarity=0.263 Sum_probs=85.0
Q ss_pred ccCeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccC
Q 045458 635 DLSELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISG 714 (1170)
Q Consensus 635 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~ 714 (1170)
..+.++++++.++.+|..+ .++|+.|++++|......|..+..+++|+.|+|++|......+..+..+++|+.|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3567788888888888766 47888999998887777778888899999999998865554455568899999999999
Q ss_pred ccCCCCCcc-ccCCCCCcEEEecCCCCC
Q 045458 715 TAIRQPPSG-IFHMKNLKALYFRGCKGS 741 (1170)
Q Consensus 715 ~~i~~lp~~-l~~l~~L~~L~L~~c~~~ 741 (1170)
|.++.+|.. +..+++|++|+|++|+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 999988775 778999999999998743
No 157
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.67 E-value=1.1e-07 Score=96.53 Aligned_cols=103 Identities=18% Similarity=0.243 Sum_probs=82.0
Q ss_pred CeEeccCcCCCccCccccCCCCCCEEeccCCcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCcc
Q 045458 637 SELFLDGTSITEVPSSIELLTGLNVLNLNDCKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTA 716 (1170)
Q Consensus 637 ~~L~l~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~ 716 (1170)
+.++++++.+..+|..+. ++|+.|++++|......|..+..+++|+.|+|++|......+..+..+++|+.|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 567777888888887664 788888888888776667788888999999999885444333446788999999999999
Q ss_pred CCCCCcc-ccCCCCCcEEEecCCCCC
Q 045458 717 IRQPPSG-IFHMKNLKALYFRGCKGS 741 (1170)
Q Consensus 717 i~~lp~~-l~~l~~L~~L~L~~c~~~ 741 (1170)
++.+|.. +..+++|++|+|++|+..
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 9988876 778999999999988743
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.67 E-value=4.2e-07 Score=105.23 Aligned_cols=209 Identities=12% Similarity=0.172 Sum_probs=101.2
Q ss_pred CceEEEcCCCCCCCCCCC-C-CCCceeEEEccCCChHHHhhcCCCCCCCcEEEcCCCCCCCcCCC--CCCCCCccEEEee
Q 045458 425 KLRLLDWPGYPLKSLPPN-L-QLDKTIEFKMLCSRIEELWKGIKSLNMLKVMKVSYSQSLIKIPD--FTGVPNLEKLYLE 500 (1170)
Q Consensus 425 ~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~s~i~~L~~~l~~l~~L~~L~Ls~~~~l~~~~~--~~~l~~L~~L~L~ 500 (1170)
+|+.+.+.. .++.++.. | .+.+|+.++++.+++..++.+.-.+.+|+.+.+..+ +..++. |.++++|+.+++.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecC
Confidence 355555543 44444433 2 455555555555555555544333455555555432 233332 5555555555554
Q ss_pred ccCCcccccccccCCCCccEEEeeCCCCCCccCccccCCcccEEEecCCCCCCccccccCCCCCCcEEEecCccCC----
Q 045458 501 GCTRLREIHPSLLLHSKLVILNLTGCTSLATLPGKIFMKSVKKLVLSGCSKLKKFPKIVGNMECLSKLLLDGTAIG---- 576 (1170)
Q Consensus 501 ~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~i~---- 576 (1170)
. .+..++.....-.+|+.+.+.+ .+..++ ...|.++.+|+.+.+.++.+.
T Consensus 235 ~--~l~~I~~~aF~~~~L~~i~lp~--~i~~I~----------------------~~aF~~c~~L~~l~l~~~~~~~~~~ 288 (401)
T 4fdw_A 235 E--NVSTIGQEAFRESGITTVKLPN--GVTNIA----------------------SRAFYYCPELAEVTTYGSTFNDDPE 288 (401)
T ss_dssp T--TCCEECTTTTTTCCCSEEEEET--TCCEEC----------------------TTTTTTCTTCCEEEEESSCCCCCTT
T ss_pred C--CccCccccccccCCccEEEeCC--CccEEC----------------------hhHhhCCCCCCEEEeCCccccCCcc
Confidence 3 2333333222224444444422 223332 234455555555555554433
Q ss_pred -cc-CcchhcCCCCCEEeccCCCCCCcC-ccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCCccCcc-
Q 045458 577 -EL-PLSIELLSKLVSLDLNNCKNFKNL-PVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSITEVPSS- 652 (1170)
Q Consensus 577 -~l-~~~i~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~- 652 (1170)
.+ +..+..+++|+.+++.++ +..+ ...+..+.+|+.+.|..+ ....-...+.++ +|+.+.+.++....++..
T Consensus 289 ~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~ 364 (401)
T 4fdw_A 289 AMIHPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKV 364 (401)
T ss_dssp CEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSS
T ss_pred cEECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccccc
Confidence 22 234555666666666532 3333 235566677777777443 222223456666 777777777766655432
Q ss_pred ccCC-CCCCEEeccC
Q 045458 653 IELL-TGLNVLNLND 666 (1170)
Q Consensus 653 i~~l-~~L~~L~L~~ 666 (1170)
+..+ .+++.|.+..
T Consensus 365 F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 365 WYGFPDDITVIRVPA 379 (401)
T ss_dssp CCCSCTTCCEEEECG
T ss_pred ccCCCCCccEEEeCH
Confidence 3334 3566666654
No 159
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.66 E-value=8e-08 Score=110.89 Aligned_cols=201 Identities=18% Similarity=0.184 Sum_probs=115.9
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHH
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQ 102 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 102 (1170)
.|...+++||++..++.+...+..+. ..+.+.|+|++|+||||+|+.+++.+....... ....+.... .
T Consensus 11 rp~~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~---------~~~~~~~~~-~ 79 (373)
T 1jr3_A 11 RPQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT---------ATPCGVCDN-C 79 (373)
T ss_dssp CCCSTTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC---------SSCCSSSHH-H
T ss_pred CCCchhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC---------CCCCcccHH-H
Confidence 34455779999999999999987542 235788999999999999999998764322100 000000000 0
Q ss_pred HHHHHH----HhhcCCCccccchhhHHHHHHhh-----CCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCC
Q 045458 103 KQLLSN----LLKLGDISIWHVEDGINIIGSRL-----RQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRD 171 (1170)
Q Consensus 103 ~~ll~~----l~~~~~~~~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~ 171 (1170)
..+... +...........++ ...+.+.+ .+++.++|+||++.. ...+.+.........+..+|++|..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 158 (373)
T 1jr3_A 80 REIEQGRFVDLIEIDAASRTKVED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 158 (373)
T ss_dssp HHHHTSCCSSCEEEETTCSCCSSC-HHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESC
T ss_pred HHHhccCCCceEEecccccCCHHH-HHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCC
Confidence 000000 00000000001111 22222222 346789999999653 3445554443333567788888865
Q ss_pred chhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHHHH
Q 045458 172 KQLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVLGS 237 (1170)
Q Consensus 172 ~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~ 237 (1170)
..-....-......+++.+++.++..+++...+-..... ...+.+..+++.++|.|..+..+..
T Consensus 159 ~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~--~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 159 PQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred hHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 432111111223489999999999999998766322211 2235577899999999998776543
No 160
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.65 E-value=3.3e-07 Score=104.57 Aligned_cols=205 Identities=17% Similarity=0.136 Sum_probs=115.0
Q ss_pred hHHHHHHHHHHHHHhhcccCCCccCccccchhhHHHHHHHHcC----------CCCCeEEEEEEeCCCccHHHHHHHHHh
Q 045458 4 NESEFIEEIVNVISSKIHTEPETIKELVGIESRLEKIRFLMGT----------GSSDVRMIGIWGMGGLGKTTLARVVYD 73 (1170)
Q Consensus 4 ~e~~~i~~i~~~i~~~l~~~~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~~~~ 73 (1170)
.|.++++.|..++..+ .++...++++|.+..+++|.+++.. .....+.|.|+|++|+|||++|+++++
T Consensus 62 ~~~~~~~~i~~~i~~~--~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 62 LEPKMIELIMNEIMDH--GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp SCHHHHHHHHHHTBCC--SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred CChHHHHHHHhhcccC--CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3455666665555332 3445557899999999999887642 112356789999999999999999998
Q ss_pred hhccccCceeEEEecchhhccC-CcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH------
Q 045458 74 SMSYEFDGSSFLADVREKSEKE-GSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV------ 146 (1170)
Q Consensus 74 ~~~~~f~~~~~~~~~~~~~~~~-~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~------ 146 (1170)
..... ++..+........ +......+ ..+...-..++.+|+||+++..
T Consensus 140 ~~~~~----~~~i~~~~l~~~~~g~~~~~~~---------------------~~~~~a~~~~~~vl~iDEid~l~~~~~~ 194 (357)
T 3d8b_A 140 QSGAT----FFSISASSLTSKWVGEGEKMVR---------------------ALFAVARCQQPAVIFIDEIDSLLSQRGD 194 (357)
T ss_dssp HTTCE----EEEEEGGGGCCSSTTHHHHHHH---------------------HHHHHHHHTCSEEEEEETHHHHTBC---
T ss_pred HcCCe----EEEEehHHhhccccchHHHHHH---------------------HHHHHHHhcCCeEEEEeCchhhhccCCC
Confidence 76322 2222222211110 10011111 1111222356789999999543
Q ss_pred -------HH----HHHhhcCcCCCCCCcEEEEEeCCchhhh-hhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhh
Q 045458 147 -------EQ----LQSLAGKRDWFGPGSRILITTRDKQLLV-AHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEY 214 (1170)
Q Consensus 147 -------~~----l~~l~~~~~~~~~gsrIIiTTR~~~v~~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~ 214 (1170)
.. +..+.+.......+..||.||....... .....-...+.++..+.++..+++...+-..... ..
T Consensus 195 ~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~ 272 (357)
T 3d8b_A 195 GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC--LS 272 (357)
T ss_dssp ---CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC--CC
T ss_pred CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC--cc
Confidence 11 2222222111234556676776543211 1111111378899999999999998776432211 12
Q ss_pred HHHHHHHHHHhCC-CchHHHHHHH
Q 045458 215 VELSERVLEYAGG-LPLALKVLGS 237 (1170)
Q Consensus 215 ~~~~~~i~~~~~G-lPLal~~l~~ 237 (1170)
.+....+++.+.| .+-.+..+..
T Consensus 273 ~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 273 EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3456778888888 4556666654
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.64 E-value=8.6e-07 Score=102.60 Aligned_cols=233 Identities=10% Similarity=0.132 Sum_probs=122.3
Q ss_pred ceeEEEccCCChHHHhhc-CCCCCCCcEEEcCCCCCCCcCC--CCCCCCCccEEEeeccCCcccccccccCCCCccEEEe
Q 045458 447 KTIEFKMLCSRIEELWKG-IKSLNMLKVMKVSYSQSLIKIP--DFTGVPNLEKLYLEGCTRLREIHPSLLLHSKLVILNL 523 (1170)
Q Consensus 447 ~L~~L~L~~s~i~~L~~~-l~~l~~L~~L~Ls~~~~l~~~~--~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L 523 (1170)
+|+.+.++.+ ++.+... +.. .+|+.+.+.. .+..++ .|.++++|+.+++.++ .+..++.....+.+|+.+.+
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEEC
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEe
Confidence 4555555543 4444322 233 3466666654 233333 2666666666666553 34444444444555666555
Q ss_pred eCCCCCCccCcccc--CCcccEEEecCCCCCCcccc-ccCCCCCCcEEEecCccCCccCcchhcCCCCCEEeccCCCCCC
Q 045458 524 TGCTSLATLPGKIF--MKSVKKLVLSGCSKLKKFPK-IVGNMECLSKLLLDGTAIGELPLSIELLSKLVSLDLNNCKNFK 600 (1170)
Q Consensus 524 ~~c~~l~~lp~~~~--l~~L~~L~L~~~~~~~~l~~-~l~~l~~L~~L~L~~~~i~~l~~~i~~l~~L~~L~L~~~~~l~ 600 (1170)
.. .+..++...+ +++|+.+.+..+ +..++. .|.+ .+|+.+.+. +.+..++
T Consensus 211 p~--~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp-~~i~~I~--------------------- 263 (401)
T 4fdw_A 211 PV--TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLP-NGVTNIA--------------------- 263 (401)
T ss_dssp CT--TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEE-TTCCEEC---------------------
T ss_pred CC--chheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeC-CCccEEC---------------------
Confidence 43 2444433332 445555555432 222221 2222 344444442 2222221
Q ss_pred cCccccCCCCcccEEEeeCCCCC-----CCcchhhcCCcccCeEeccCcCCCccCc-cccCCCCCCEEeccCCcCCcccc
Q 045458 601 NLPVTISSLKCLRSLVLSGCSKL-----KKFPEIVESMEDLSELFLDGTSITEVPS-SIELLTGLNVLNLNDCKNLVRIP 674 (1170)
Q Consensus 601 ~lp~~l~~l~~L~~L~L~~~~~~-----~~~p~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~L~~~~~l~~lp 674 (1170)
...+..+++|+.+.+.++... ..-...+..+++|+.+.+. +.++.++. .+..+++|+.+.|..+ +..+.
T Consensus 264 --~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~ 338 (401)
T 4fdw_A 264 --SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN--VTQIN 338 (401)
T ss_dssp --TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT--CCEEC
T ss_pred --hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc--ccEEc
Confidence 234555666666666554332 1234456677777777776 34665543 4567788888888543 44443
Q ss_pred -ccCCCCCCCCEEEeeCcCCCCCCccccCCC-CCCcEEEccCccC
Q 045458 675 -DSINGLKSLQSLNLSGCFKLENVPETLGQV-ESLEELHISGTAI 717 (1170)
Q Consensus 675 -~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l-~~L~~L~L~~~~i 717 (1170)
..|.++ +|+.+.+.++.........+..+ .+++.|.+..+.+
T Consensus 339 ~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp TTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred HHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 456777 88888888875544444555555 3678888766543
No 162
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.59 E-value=6.2e-07 Score=101.78 Aligned_cols=269 Identities=15% Similarity=0.101 Sum_probs=147.8
Q ss_pred CCCccCccccchhhHHHHHHHHcCC---CCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHH
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTG---SSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVI 99 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 99 (1170)
.|...++++|++..++++..++... ....+.|.|+|++|+|||++|+.+++.....| +.+. .... .. .
T Consensus 24 ~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~---~~~~-~~~~----~~-~ 94 (338)
T 3pfi_A 24 RPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI---KTTA-APMI----EK-S 94 (338)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE---EEEE-GGGC----CS-H
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEec-chhc----cc-h
Confidence 4456678999999999998888642 23345689999999999999999988764332 1111 1100 00 0
Q ss_pred HHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH--HHHHHhhcCcCC------------------C
Q 045458 100 SLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV--EQLQSLAGKRDW------------------F 159 (1170)
Q Consensus 100 ~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~------------------~ 159 (1170)
.... ..+.+ ..+..+|+||+++.. ...+.+...... .
T Consensus 95 ~~~~---------------------~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T 3pfi_A 95 GDLA---------------------AILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKID 151 (338)
T ss_dssp HHHH---------------------HHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCC
T ss_pred hHHH---------------------HHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecC
Confidence 0000 11111 235678899999754 222222211110 0
Q ss_pred CCCcEEEEEeCCchhhhh-hCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHHHHh
Q 045458 160 GPGSRILITTRDKQLLVA-HEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVLGSF 238 (1170)
Q Consensus 160 ~~gsrIIiTTR~~~v~~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~ 238 (1170)
.++.++|.||........ ........+.+++++.++..+++...+.... .....+....+++.+.|.|-.+..+...
T Consensus 152 ~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~l~~ 229 (338)
T 3pfi_A 152 LPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN--KTCEEKAALEIAKRSRSTPRIALRLLKR 229 (338)
T ss_dssp CCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CEECHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred CCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 123577777765432211 1111124899999999999999987764322 1223456777888899999665544332
Q ss_pred hc------CC---CHHHHHHHHHHhhcCCCchHHHHHHhhccCCChhhhhHhhhhccccc-ccCHHHHHHHHhhCCCCcc
Q 045458 239 LI------GR---TADLWRSALERLKRDPSYKIMSILQISFDGLQGSEKKIFLDVACFFK-RWDRDYVAEILEGCGFSPV 308 (1170)
Q Consensus 239 L~------~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~-~~~~~~l~~~~~~~g~~~~ 308 (1170)
+. +. +.+....++.. +..+...++..+++.+..++-... ......+++.+...--...
T Consensus 230 ~~~~a~~~~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~ 297 (338)
T 3pfi_A 230 VRDFADVNDEEIITEKRANEALNS------------LGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIE 297 (338)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHH
T ss_pred HHHHHHhhcCCccCHHHHHHHHHH------------hCCcccCCCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHH
Confidence 21 11 23333333322 233344566655666665554421 2345666665432111111
Q ss_pred chhh-hhhcccceeeeCCCceechHHHHHH
Q 045458 309 IGLE-VLIERSLLTVDEDNTLGMHDLLQEL 337 (1170)
Q Consensus 309 ~~l~-~L~~~sLi~~~~~~~~~mH~li~~~ 337 (1170)
..++ .|++.++|.....+++.-..-++.+
T Consensus 298 ~~l~~~l~~~gli~~~~~g~~~t~~~~~~~ 327 (338)
T 3pfi_A 298 DVIEPYLLANGYIERTAKGRIASAKSYSAL 327 (338)
T ss_dssp HTTHHHHHHTTSEEEETTEEEECHHHHHHH
T ss_pred HHHhHHHHHcCceecCCCcccccHHHHHHh
Confidence 1244 7889999988866665443333333
No 163
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.55 E-value=2.2e-07 Score=95.70 Aligned_cols=52 Identities=12% Similarity=0.210 Sum_probs=43.2
Q ss_pred CCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 24 PETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 24 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
|...+.++||+..++++.+.+... ..+.+.|+|++|+|||++|+.+++.+..
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hccccccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 445678999999999999998763 3466889999999999999999987643
No 164
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.55 E-value=7e-07 Score=98.65 Aligned_cols=186 Identities=19% Similarity=0.230 Sum_probs=105.4
Q ss_pred cCCCccCccccchhhHHHHHHHHcCC-----------CCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecch
Q 045458 22 TEPETIKELVGIESRLEKIRFLMGTG-----------SSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVRE 90 (1170)
Q Consensus 22 ~~~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~ 90 (1170)
.+....++++|++..+++|.+.+... ....+-+.|+|++|+|||++|+++++.....| +..+...
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~----~~v~~~~ 86 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF----IRVVGSE 86 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE----EEEEGGG
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehHH
Confidence 34445678999999999998876431 12345689999999999999999998764332 1111111
Q ss_pred hhcc-CCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH----------------HHHHHhh
Q 045458 91 KSEK-EGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV----------------EQLQSLA 153 (1170)
Q Consensus 91 ~~~~-~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~----------------~~l~~l~ 153 (1170)
.... .+...... ...+......++.+|+||+++.. ..+..+.
T Consensus 87 ~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll 145 (285)
T 3h4m_A 87 LVKKFIGEGASLV---------------------KDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLL 145 (285)
T ss_dssp GCCCSTTHHHHHH---------------------HHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHH
T ss_pred HHHhccchHHHHH---------------------HHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHH
Confidence 1111 11101111 11122223356789999999654 1122222
Q ss_pred cCcC--CCCCCcEEEEEeCCchhhhhhCC---CCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCC
Q 045458 154 GKRD--WFGPGSRILITTRDKQLLVAHEV---DEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGL 228 (1170)
Q Consensus 154 ~~~~--~~~~gsrIIiTTR~~~v~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 228 (1170)
.... ....+..||.||........... .-...+.++..+.++..+++..++.......+ .....+++.+.|.
T Consensus 146 ~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~l~~~~~g~ 222 (285)
T 3h4m_A 146 AEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED---VNLEEIAKMTEGC 222 (285)
T ss_dssp HHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHHCTTC
T ss_pred HHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc---CCHHHHHHHcCCC
Confidence 2211 11346778888876543221111 11137999999999999999888743322211 1135566777773
Q ss_pred -chHHHHH
Q 045458 229 -PLALKVL 235 (1170)
Q Consensus 229 -PLal~~l 235 (1170)
|-.+..+
T Consensus 223 ~~~~i~~l 230 (285)
T 3h4m_A 223 VGAELKAI 230 (285)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 4444443
No 165
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.50 E-value=5.6e-06 Score=96.02 Aligned_cols=144 Identities=12% Similarity=0.119 Sum_probs=77.7
Q ss_pred CCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCccCCCCCccccCCCCCcEEEecCCCCCCCCCCcccCcccccc
Q 045458 677 INGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGTAIRQPPSGIFHMKNLKALYFRGCKGSPSSTSWSRHFPFNLI 756 (1170)
Q Consensus 677 l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~c~~~~~~~~~~~~~~l~~~ 756 (1170)
+..+.+|+.+.+..+. ...-...+..+.+++.+....+.+.. ..+..+.+|+.+.+...-..
T Consensus 249 f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~i~~--------------- 310 (394)
T 4fs7_A 249 FYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDSVKF--------------- 310 (394)
T ss_dssp TTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTTCCE---------------
T ss_pred ccccccceeEEcCCCc-ceeeccccccccccceeccCceeecc--ccccccccccccccccccce---------------
Confidence 4445556655554431 11112234445556655554433221 23445666777666432110
Q ss_pred cccCCCCcccCCCCCCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCcccc-hhhhcCCCCCEeeccCccC
Q 045458 757 KRSLDPVAFSFPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVSLP-ASISRLSKLECLNLNGCKK 835 (1170)
Q Consensus 757 ~~~~~~~~~~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~lp-~~i~~l~~L~~L~L~~c~~ 835 (1170)
.-...+.++.+|+.++|.++ + +..-..++.++++|+.+.+..+ ++.++ ..+.++++|+.+.+...
T Consensus 311 ---------I~~~aF~~c~~L~~i~lp~~-v-~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-- 376 (394)
T 4fs7_A 311 ---------IGEEAFESCTSLVSIDLPYL-V-EEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-- 376 (394)
T ss_dssp ---------ECTTTTTTCTTCCEECCCTT-C-CEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG--
T ss_pred ---------echhhhcCCCCCCEEEeCCc-c-cEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC--
Confidence 11223667778888887643 3 2223456778888888888765 66665 35677788888877532
Q ss_pred CCcCCCCCcccceeeccCCcCCccc
Q 045458 836 LQSLPPLPARMRIASVNGCASLETL 860 (1170)
Q Consensus 836 L~~lp~lp~sL~~L~i~~C~~L~~l 860 (1170)
++.+ + -...+|++|+.+
T Consensus 377 ~~~~-------~-~~F~~c~~L~~I 393 (394)
T 4fs7_A 377 LEQY-------R-YDFEDTTKFKWI 393 (394)
T ss_dssp GGGG-------G-GGBCTTCEEEEE
T ss_pred CEEh-------h-heecCCCCCcEE
Confidence 2222 1 135678877754
No 166
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.49 E-value=7e-07 Score=98.44 Aligned_cols=169 Identities=13% Similarity=0.078 Sum_probs=96.8
Q ss_pred ccccchhhHHHHHHHHcCC--CCCeEEEEEEeCCCccHHHHHHHHHhhhccccC-----c--eeEEEecchhhccCCcHH
Q 045458 29 ELVGIESRLEKIRFLMGTG--SSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFD-----G--SSFLADVREKSEKEGSVI 99 (1170)
Q Consensus 29 ~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~-----~--~~~~~~~~~~~~~~~~~~ 99 (1170)
.+.|||.++++|...|... .+....+.|+|++|+|||++|+.+++++..... . .+.+. ... .....
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN-c~~----~~t~~ 95 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID-ALE----LAGMD 95 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE-TTC----CC--H
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe-ccc----cCCHH
Confidence 4899999999998776542 245678899999999999999999998754321 1 22232 111 11225
Q ss_pred HHHHHHHHHHhhcCCCccccchhhHHHHHHhh---CCCeEEEEEeCCCCHHH---HHHhhcCcCCCCCCcEEEEEeCCch
Q 045458 100 SLQKQLLSNLLKLGDISIWHVEDGINIIGSRL---RQKKVLLIIDDVADVEQ---LQSLAGKRDWFGPGSRILITTRDKQ 173 (1170)
Q Consensus 100 ~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L---~~k~~LlVLDdv~~~~~---l~~l~~~~~~~~~gsrIIiTTR~~~ 173 (1170)
.+...|+.++.+.. .......+....+.+.+ .++++++|||+++...+ +..+............||.++....
T Consensus 96 ~~~~~I~~~L~g~~-~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 96 ALYEKIWFAISKEN-LCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHHHHHHHHSCCC---CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred HHHHHHHHHhcCCC-CCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 67777777775322 11111222222222322 45789999999987532 3222211000011223444454432
Q ss_pred hhh-hh------CCCCccEEECCCCChHHHHHHHHHhh
Q 045458 174 LLV-AH------EVDEEHILNLDVLNNDEALQLFSMKA 204 (1170)
Q Consensus 174 v~~-~~------~~~~~~~~~l~~L~~~ea~~Lf~~~a 204 (1170)
... .. ... ...+.+++++.+|-.+++..++
T Consensus 175 ~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 175 TIREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp CCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred cchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 211 00 111 1379999999999999998776
No 167
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.48 E-value=2.4e-06 Score=94.95 Aligned_cols=198 Identities=18% Similarity=0.191 Sum_probs=112.7
Q ss_pred HHHHHHHhhcc--cCCCccCccccchhhHHHHHHHHcCC----------CCCeEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 11 EIVNVISSKIH--TEPETIKELVGIESRLEKIRFLMGTG----------SSDVRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 11 ~i~~~i~~~l~--~~~~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
++++.+.+.+. .++..-++++|.+..++.|.+++... ....+.|.|+|++|+||||+|++++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~ 81 (297)
T 3b9p_A 2 KLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT 81 (297)
T ss_dssp CHHHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 56777777776 44555688999999999998876320 1224678999999999999999999876432
Q ss_pred cCceeEEEecchhhc-cCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH-----------
Q 045458 79 FDGSSFLADVREKSE-KEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV----------- 146 (1170)
Q Consensus 79 f~~~~~~~~~~~~~~-~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~----------- 146 (1170)
| +..+...... ..+......+. .+......++.+|+||+++..
T Consensus 82 ~----~~i~~~~l~~~~~~~~~~~~~~---------------------~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~ 136 (297)
T 3b9p_A 82 F----LNISAASLTSKYVGDGEKLVRA---------------------LFAVARHMQPSIIFIDEVDSLLSERSSSEHEA 136 (297)
T ss_dssp E----EEEESTTTSSSSCSCHHHHHHH---------------------HHHHHHHTCSEEEEEETGGGTSBCC-----CC
T ss_pred e----EEeeHHHHhhcccchHHHHHHH---------------------HHHHHHHcCCcEEEeccHHHhccccccCcchH
Confidence 2 1111111111 11111111111 112222356789999999543
Q ss_pred --HH----HHHhhcCcC-CCCCCcEEEEEeCCchhhhh---hCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHH
Q 045458 147 --EQ----LQSLAGKRD-WFGPGSRILITTRDKQLLVA---HEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVE 216 (1170)
Q Consensus 147 --~~----l~~l~~~~~-~~~~gsrIIiTTR~~~v~~~---~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~ 216 (1170)
.. +..+..... ..+.+..||.||........ .... ..+.++..+.++..+++...+-..... ...+
T Consensus 137 ~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~--~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~ 212 (297)
T 3b9p_A 137 SRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFT--KRVYVSLPDEQTRELLLNRLLQKQGSP--LDTE 212 (297)
T ss_dssp SHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCC--EEEECCCCCHHHHHHHHHHHHGGGSCC--SCHH
T ss_pred HHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCC--eEEEeCCcCHHHHHHHHHHHHHhcCCC--CCHH
Confidence 11 111111111 11234667777776432111 1122 278888889999888888776432221 1234
Q ss_pred HHHHHHHHhCCCch-HHHHHHH
Q 045458 217 LSERVLEYAGGLPL-ALKVLGS 237 (1170)
Q Consensus 217 ~~~~i~~~~~GlPL-al~~l~~ 237 (1170)
....+++.+.|.+- ++..+..
T Consensus 213 ~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 213 ALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHH
Confidence 56778888999876 5555543
No 168
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.45 E-value=3.2e-06 Score=94.99 Aligned_cols=186 Identities=17% Similarity=0.143 Sum_probs=106.4
Q ss_pred cCCCccCccccchhhHHHHHHHHc----------CCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchh
Q 045458 22 TEPETIKELVGIESRLEKIRFLMG----------TGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREK 91 (1170)
Q Consensus 22 ~~~~~~~~~vGr~~~~~~l~~~L~----------~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~ 91 (1170)
.++..-++++|.+..+++|.+++. ......+-|.|+|++|+|||+||+++++.....| +..+..+.
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~----~~v~~~~l 87 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSDL 87 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE----EEEEHHHH
T ss_pred CCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE----EEEchHHH
Confidence 344455789999999999988772 1122246789999999999999999998764332 22111111
Q ss_pred hcc-CCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH-------------HHHHhhcC--
Q 045458 92 SEK-EGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVE-------------QLQSLAGK-- 155 (1170)
Q Consensus 92 ~~~-~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~-------------~l~~l~~~-- 155 (1170)
... .+......+ ..+...-..++.+|+||+++... ....+...
T Consensus 88 ~~~~~g~~~~~~~---------------------~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~ 146 (322)
T 3eie_A 88 VSKWMGESEKLVK---------------------QLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMN 146 (322)
T ss_dssp HTTTGGGHHHHHH---------------------HHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHG
T ss_pred hhcccchHHHHHH---------------------HHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhc
Confidence 100 011011111 11222223567899999997431 12222211
Q ss_pred -cCCCCCCcEEEEEeCCchhhhh---hCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCC-ch
Q 045458 156 -RDWFGPGSRILITTRDKQLLVA---HEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGL-PL 230 (1170)
Q Consensus 156 -~~~~~~gsrIIiTTR~~~v~~~---~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl-PL 230 (1170)
......+..||.||........ ...+. .+.++..+.++..+++..++...... ........+++++.|. +-
T Consensus 147 ~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~--~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~l~~la~~t~g~sg~ 222 (322)
T 3eie_A 147 GVGNDSQGVLVLGATNIPWQLDSAIRRRFER--RIYIPLPDLAARTTMFEINVGDTPCV--LTKEDYRTLGAMTEGYSGS 222 (322)
T ss_dssp GGGTSCCCEEEEEEESCGGGSCHHHHHHCCE--EEECCCCCHHHHHHHHHHHHTTCCCC--CCHHHHHHHHHTTTTCCHH
T ss_pred cccccCCceEEEEecCChhhCCHHHHcccCe--EEEeCCCCHHHHHHHHHHHhccCCCC--CCHHHHHHHHHHcCCCCHH
Confidence 1122355677777776432211 12223 78899999999999999887443221 1223456777888774 44
Q ss_pred HHHHHH
Q 045458 231 ALKVLG 236 (1170)
Q Consensus 231 al~~l~ 236 (1170)
.|..+.
T Consensus 223 di~~l~ 228 (322)
T 3eie_A 223 DIAVVV 228 (322)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 169
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.44 E-value=3.8e-06 Score=95.54 Aligned_cols=199 Identities=16% Similarity=0.132 Sum_probs=104.1
Q ss_pred HHHHHHHHhhcc--cCCCccCccccchhhHHHHHHHHcC----------CCCCeEEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 10 EEIVNVISSKIH--TEPETIKELVGIESRLEKIRFLMGT----------GSSDVRMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 10 ~~i~~~i~~~l~--~~~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
+++.+.+...+. .++..-++++|.+..++.|.+.+.. .....+-|.|+|++|+|||+||+++++....
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~ 110 (355)
T 2qp9_X 31 KKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS 110 (355)
T ss_dssp ----------------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 445555554443 3444567899999999999887621 1122356889999999999999999987743
Q ss_pred ccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHH-HHHHhhCCCeEEEEEeCCCCHH---------
Q 045458 78 EFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGIN-IIGSRLRQKKVLLIIDDVADVE--------- 147 (1170)
Q Consensus 78 ~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~-~i~~~L~~k~~LlVLDdv~~~~--------- 147 (1170)
. ++..+..+..... ......... .+...-..++.+|+||+++...
T Consensus 111 ~----~~~v~~~~l~~~~---------------------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~ 165 (355)
T 2qp9_X 111 T----FFSVSSSDLVSKW---------------------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESE 165 (355)
T ss_dssp E----EEEEEHHHHHSCC------------------------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CT
T ss_pred C----EEEeeHHHHhhhh---------------------cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcch
Confidence 2 1211111111000 000111111 1122223578899999997532
Q ss_pred ----HHHHhhcCcC---CCCCCcEEEEEeCCchhhh-h--hCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHH
Q 045458 148 ----QLQSLAGKRD---WFGPGSRILITTRDKQLLV-A--HEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVEL 217 (1170)
Q Consensus 148 ----~l~~l~~~~~---~~~~gsrIIiTTR~~~v~~-~--~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~ 217 (1170)
....+...+. ....+..||.||....... . ...+ ..+.++..+.++..+++..++...... .....
T Consensus 166 ~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~--~~i~i~~P~~~~r~~il~~~l~~~~~~--~~~~~ 241 (355)
T 2qp9_X 166 ASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFE--RRIYIPLPDLAARTTMFEINVGDTPSV--LTKED 241 (355)
T ss_dssp HHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCC--EEEECCCCCHHHHHHHHHHHHTTSCBC--CCHHH
T ss_pred HHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccC--EEEEeCCcCHHHHHHHHHHHHhhCCCC--CCHHH
Confidence 1222222111 1134566776776543211 1 1223 378899999999999998877433211 11344
Q ss_pred HHHHHHHhCCC-chHHHHHHH
Q 045458 218 SERVLEYAGGL-PLALKVLGS 237 (1170)
Q Consensus 218 ~~~i~~~~~Gl-PLal~~l~~ 237 (1170)
...+++.+.|. +-.|..+..
T Consensus 242 l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 242 YRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp HHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHH
Confidence 66788888884 445555543
No 170
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.42 E-value=7.1e-06 Score=95.16 Aligned_cols=61 Identities=13% Similarity=0.026 Sum_probs=30.1
Q ss_pred hcchhhhccCCCccEEeecCc--ccCCchhcccCCceEEEcCCCCCCCCCCCC--CCCceeEEEcc
Q 045458 393 WASAKAFSKMTNLRLLGICNL--KLPEGLECLSNKLRLLDWPGYPLKSLPPNL--QLDKTIEFKML 454 (1170)
Q Consensus 393 ~~~~~~f~~~~~Lr~L~l~~~--~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~ 454 (1170)
.+...+|..+.+|+.+.+... .+...-..-..+|+.+.+..+ ++.++... .+.+|..+.++
T Consensus 61 sIg~~AF~~c~~L~~i~lp~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPSTVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp EECTTTTTTCTTEEEEECCTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred EhHHHHhhCCCCceEEEeCCCccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc
Confidence 355678888888888777432 122222222234566655432 44444332 34444444433
No 171
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.41 E-value=5.4e-07 Score=96.67 Aligned_cols=178 Identities=14% Similarity=0.094 Sum_probs=101.9
Q ss_pred CccCccccch---hhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHH
Q 045458 25 ETIKELVGIE---SRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISL 101 (1170)
Q Consensus 25 ~~~~~~vGr~---~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 101 (1170)
...++|+|.+ ..++.+..+.... ..+.+.|+|++|+||||+|+.+++..........++. ..+.... .
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~-~~~~~~~--~---- 95 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP-LGIHASI--S---- 95 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-GGGGGGS--C----
T ss_pred CChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHHHHHH--H----
Confidence 4457788743 5566666666542 4477899999999999999999987765433344443 2211110 0
Q ss_pred HHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH--H--HHHhhcCcCCC-CCC-cEEEEEeCCchh-
Q 045458 102 QKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVE--Q--LQSLAGKRDWF-GPG-SRILITTRDKQL- 174 (1170)
Q Consensus 102 ~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~--~--l~~l~~~~~~~-~~g-srIIiTTR~~~v- 174 (1170)
.+. .+.+ .++.+||+||++... . .+.+....... ..+ .++|+||+...-
T Consensus 96 -------------------~~~----~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~ 151 (242)
T 3bos_A 96 -------------------TAL----LEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPME 151 (242)
T ss_dssp -------------------GGG----GTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTT
T ss_pred -------------------HHH----HHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHH
Confidence 000 0111 345689999996531 1 22222211100 122 258888874321
Q ss_pred h----hhh--CCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHHHH
Q 045458 175 L----VAH--EVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVLGS 237 (1170)
Q Consensus 175 ~----~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~ 237 (1170)
. ... .......+++++++.++..+++...+..... .-..+....++++++|.+-.+..+..
T Consensus 152 ~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 152 AGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL--QLPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp TTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC--CCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 0 000 0011138999999999999999887642221 12245677888899998877665443
No 172
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.40 E-value=5.3e-06 Score=90.22 Aligned_cols=185 Identities=17% Similarity=0.178 Sum_probs=100.5
Q ss_pred ccCccccchhhHHHHHHHHcC----------CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccC
Q 045458 26 TIKELVGIESRLEKIRFLMGT----------GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKE 95 (1170)
Q Consensus 26 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 95 (1170)
..++++|.+..+++|.+++.. +....+-|.|+|++|+|||++|+++++.....| +.+ +........
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~-~~~~~~~~~ 79 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF---LAM-AGAEFVEVI 79 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEE-ETTTTSSSS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEe-chHHHHhhc
Confidence 456799999988888766531 112345688999999999999999998764322 122 222111111
Q ss_pred CcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH-----------------HHHHHhhcCcCC
Q 045458 96 GSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV-----------------EQLQSLAGKRDW 158 (1170)
Q Consensus 96 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~-----------------~~l~~l~~~~~~ 158 (1170)
.. . . .......+.......+.+|+||+++.. ..+..+......
T Consensus 80 ~~--~-~-----------------~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 139 (262)
T 2qz4_A 80 GG--L-G-----------------AARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDG 139 (262)
T ss_dssp TT--H-H-----------------HHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHT
T ss_pred cC--h-h-----------------HHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhC
Confidence 00 0 0 001111222223346789999999764 112233222211
Q ss_pred --CCCCcEEEEEeCCchhhhhhCCC---CccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCch-HH
Q 045458 159 --FGPGSRILITTRDKQLLVAHEVD---EEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPL-AL 232 (1170)
Q Consensus 159 --~~~gsrIIiTTR~~~v~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al 232 (1170)
...+..||.||.........-.. -...+.++..+.++..+++..++....... ........+++.+.|.+- .+
T Consensus 140 ~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~-~~~~~~~~l~~~~~g~~~~~l 218 (262)
T 2qz4_A 140 MGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQ-SSTFYSQRLAELTPGFSGADI 218 (262)
T ss_dssp CCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCB-THHHHHHHHHHTCTTCCHHHH
T ss_pred cCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCc-chhhHHHHHHHHCCCCCHHHH
Confidence 12356777777655422211111 123788999999999999988764322211 112234677777777754 44
Q ss_pred HHH
Q 045458 233 KVL 235 (1170)
Q Consensus 233 ~~l 235 (1170)
..+
T Consensus 219 ~~l 221 (262)
T 2qz4_A 219 ANI 221 (262)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 173
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.39 E-value=4.8e-06 Score=91.14 Aligned_cols=172 Identities=14% Similarity=0.160 Sum_probs=94.4
Q ss_pred cCccccchhhHHHHHH-------HHcC-CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcH
Q 045458 27 IKELVGIESRLEKIRF-------LMGT-GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSV 98 (1170)
Q Consensus 27 ~~~~vGr~~~~~~l~~-------~L~~-~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 98 (1170)
...++|.+..++++.. .+.. .....+.+.|+|++|+|||++|+++++.....| +.+. ... ...+..
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~-~~~--~~~g~~ 105 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKIC-SPD--KMIGFS 105 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEE-CGG--GCTTCC
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEe-CHH--HhcCCc
Confidence 3568898887766655 3321 134567899999999999999999998753221 1121 111 000100
Q ss_pred HHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH------------HHHHHh---hcCcCCCCCCc
Q 045458 99 ISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV------------EQLQSL---AGKRDWFGPGS 163 (1170)
Q Consensus 99 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~------------~~l~~l---~~~~~~~~~gs 163 (1170)
..... ......+......++.+|+||+++.. ..++.+ .......+...
T Consensus 106 ~~~~~-----------------~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~ 168 (272)
T 1d2n_A 106 ETAKC-----------------QAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKL 168 (272)
T ss_dssp HHHHH-----------------HHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEE
T ss_pred hHHHH-----------------HHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCE
Confidence 00000 01112223333467889999998653 122333 22222223445
Q ss_pred EEEEEeCCchhhhhhCC-CC-ccEEECCCCCh-HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCC
Q 045458 164 RILITTRDKQLLVAHEV-DE-EHILNLDVLNN-DEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGL 228 (1170)
Q Consensus 164 rIIiTTR~~~v~~~~~~-~~-~~~~~l~~L~~-~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 228 (1170)
.||.||........... .. ...+.+++++. ++..+++.... . . ..+....+++.+.|.
T Consensus 169 ~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~-~---~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 169 LIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---N-F---KDKERTTIAQQVKGK 229 (272)
T ss_dssp EEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---C-S---CHHHHHHHHHHHTTS
T ss_pred EEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---C-C---CHHHHHHHHHHhcCC
Confidence 67778877754443221 11 24789999988 56666655421 1 1 134567788888883
No 174
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.37 E-value=1.9e-06 Score=98.36 Aligned_cols=199 Identities=11% Similarity=0.143 Sum_probs=113.7
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhcc--ccCceeEEEecchhhccCCcHHH
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSY--EFDGSSFLADVREKSEKEGSVIS 100 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~ 100 (1170)
.|...++++|++..++.+..++..+. .+.+.|+|++|+||||+|+.+++.+.. .+...+...+.. .. .. ..
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~---~~-~~-~~ 104 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS---DE-RG-IS 104 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS---SC-CC-HH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc---cc-cc-hH
Confidence 45556789999999999999987643 223889999999999999999987542 122222211111 11 11 12
Q ss_pred HHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCCchh-hhh
Q 045458 101 LQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRDKQL-LVA 177 (1170)
Q Consensus 101 l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~v-~~~ 177 (1170)
...+............ .... .....-..++-+|++|+++.. ...+.+...........++|++|....- ...
T Consensus 105 ~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~ 179 (353)
T 1sxj_D 105 IVREKVKNFARLTVSK--PSKH---DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDP 179 (353)
T ss_dssp HHTTHHHHHHHSCCCC--CCTT---HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred HHHHHHHHHhhhcccc--cchh---hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcch
Confidence 2222222222110000 0000 001111245679999998653 3333443333323456778888765431 111
Q ss_pred hCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHHH
Q 045458 178 HEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVLG 236 (1170)
Q Consensus 178 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~ 236 (1170)
. ......+++.+++.++..+.+...+...... -..+....++++++|.|-.+..+.
T Consensus 180 l-~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 180 L-ASQCSKFRFKALDASNAIDRLRFISEQENVK--CDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp H-HHHSEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred h-hccCceEEeCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 1112378999999999999998876433221 224567889999999988755443
No 175
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.37 E-value=7.6e-06 Score=91.64 Aligned_cols=187 Identities=15% Similarity=0.148 Sum_probs=105.3
Q ss_pred CCCccCccccchhhHHHHHHHHcC---------C-CCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhh
Q 045458 23 EPETIKELVGIESRLEKIRFLMGT---------G-SSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKS 92 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~---------~-~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~ 92 (1170)
+...-++++|.+..++.|.+.+.. + ....+-|.|+|++|+|||+||+++++.... ..++..+..+..
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~---~~~~~i~~~~l~ 83 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSDLV 83 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS---CEEEEEECCSSC
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC---CcEEEEEhHHHH
Confidence 334457899999999988876621 1 123467899999999999999999987621 111222111111
Q ss_pred cc-CCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH-------------HHHHhhcCcC-
Q 045458 93 EK-EGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVE-------------QLQSLAGKRD- 157 (1170)
Q Consensus 93 ~~-~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~-------------~l~~l~~~~~- 157 (1170)
.. .+......+. .+...-..++.+|+||+++... ....+.....
T Consensus 84 ~~~~g~~~~~~~~---------------------lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~ 142 (322)
T 1xwi_A 84 SKWLGESEKLVKN---------------------LFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQG 142 (322)
T ss_dssp CSSCCSCHHHHHH---------------------HHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHC
T ss_pred hhhhhHHHHHHHH---------------------HHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhc
Confidence 11 1110111111 1112223577899999997641 1222222111
Q ss_pred --CCCCCcEEEEEeCCchhhhh---hCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCC-chH
Q 045458 158 --WFGPGSRILITTRDKQLLVA---HEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGL-PLA 231 (1170)
Q Consensus 158 --~~~~gsrIIiTTR~~~v~~~---~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl-PLa 231 (1170)
....+..||.||........ ...+ ..+.++..+.++..+++..++...... ........+++.+.|. +-.
T Consensus 143 ~~~~~~~v~vI~atn~~~~ld~al~rRf~--~~i~i~~P~~~~r~~il~~~l~~~~~~--l~~~~l~~la~~t~G~sgad 218 (322)
T 1xwi_A 143 VGVDNDGILVLGATNIPWVLDSAIRRRFE--KRIYIPLPEPHARAAMFKLHLGTTQNS--LTEADFRELGRKTDGYSGAD 218 (322)
T ss_dssp SSSCCTTEEEEEEESCTTTSCHHHHHTCC--EEEECCCCCHHHHHHHHHHHHTTCCBC--CCHHHHHHHHHTCTTCCHHH
T ss_pred ccccCCCEEEEEecCCcccCCHHHHhhcC--eEEEeCCcCHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHcCCCCHHH
Confidence 11345566667755432111 1222 378999999999999998876332211 1234567788888887 444
Q ss_pred HHHHHH
Q 045458 232 LKVLGS 237 (1170)
Q Consensus 232 l~~l~~ 237 (1170)
|..+..
T Consensus 219 l~~l~~ 224 (322)
T 1xwi_A 219 ISIIVR 224 (322)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 176
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.37 E-value=9.2e-07 Score=101.11 Aligned_cols=201 Identities=11% Similarity=0.108 Sum_probs=108.0
Q ss_pred CCCccCccccchhhHHHHHHHH-cCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEe--------------
Q 045458 23 EPETIKELVGIESRLEKIRFLM-GTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLAD-------------- 87 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L-~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~-------------- 87 (1170)
.|...++++|.+..++.+..++ ..+. ... +.|+|+.|+||||+|+.++..+...-.+.+++..
T Consensus 9 rP~~~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~ 86 (354)
T 1sxj_E 9 RPKSLNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELN 86 (354)
T ss_dssp CCCSGGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------C
T ss_pred CCCCHHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceee
Confidence 3455678999999999999888 5432 223 8999999999999999998854222111111110
Q ss_pred ---------cchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH--HHHHhhcCc
Q 045458 88 ---------VREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVE--QLQSLAGKR 156 (1170)
Q Consensus 88 ---------~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~--~l~~l~~~~ 156 (1170)
+. ............++++..+...... .... .+ ..+..++-++|||+++..+ ..+.+...+
T Consensus 87 ~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~l 158 (354)
T 1sxj_E 87 VVSSPYHLEIT-PSDMGNNDRIVIQELLKEVAQMEQV-----DFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTM 158 (354)
T ss_dssp CEECSSEEEEC-CC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHH
T ss_pred eecccceEEec-HhhcCCcchHHHHHHHHHHHHhccc-----cccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHH
Confidence 00 0000000000112222222110000 0000 00 0023466799999997642 233333322
Q ss_pred CCCCCCcEEEEEeCCch-hhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhh-HHHHHHHHHHhCCCchHHHH
Q 045458 157 DWFGPGSRILITTRDKQ-LLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEY-VELSERVLEYAGGLPLALKV 234 (1170)
Q Consensus 157 ~~~~~gsrIIiTTR~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~-~~~~~~i~~~~~GlPLal~~ 234 (1170)
....++.++|++|.+.. +.... ......+++++++.++..+.+...+...... -. .+.+..+++.++|.+-.+..
T Consensus 159 e~~~~~~~~Il~t~~~~~l~~~l-~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~l~~i~~~~~G~~r~a~~ 235 (354)
T 1sxj_E 159 EKYSKNIRLIMVCDSMSPIIAPI-KSQCLLIRCPAPSDSEISTILSDVVTNERIQ--LETKDILKRIAQASNGNLRVSLL 235 (354)
T ss_dssp HHSTTTEEEEEEESCSCSSCHHH-HTTSEEEECCCCCHHHHHHHHHHHHHHHTCE--ECCSHHHHHHHHHHTTCHHHHHH
T ss_pred HhhcCCCEEEEEeCCHHHHHHHH-HhhceEEecCCcCHHHHHHHHHHHHHHcCCC--CCcHHHHHHHHHHcCCCHHHHHH
Confidence 22345788888887643 22211 1222489999999999999998776322211 11 25567888999998876655
Q ss_pred HH
Q 045458 235 LG 236 (1170)
Q Consensus 235 l~ 236 (1170)
+.
T Consensus 236 ~l 237 (354)
T 1sxj_E 236 ML 237 (354)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 177
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.36 E-value=4.2e-06 Score=100.32 Aligned_cols=191 Identities=17% Similarity=0.241 Sum_probs=106.1
Q ss_pred CCCccCccccchhhHHHHHHHHcCC---------------CCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEe
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTG---------------SSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLAD 87 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~---------------~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~ 87 (1170)
.|...++++|++..++++.+++... .+..+.+.|+|++|+||||+|+++++.... .+...+
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~----~~i~in 109 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY----DILEQN 109 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC----EEEEEC
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC----CEEEEe
Confidence 4555678999999999999998641 013478999999999999999999987721 122111
Q ss_pred cchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHH--HhhCCCeEEEEEeCCCCH--------HHHHHhhcCcC
Q 045458 88 VREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIG--SRLRQKKVLLIIDDVADV--------EQLQSLAGKRD 157 (1170)
Q Consensus 88 ~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~--~~L~~k~~LlVLDdv~~~--------~~l~~l~~~~~ 157 (1170)
... ... .......+....... .......... .....++.+||+|+++.. ..+..+...
T Consensus 110 ~s~----~~~-~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~-- 177 (516)
T 1sxj_A 110 ASD----VRS-KTLLNAGVKNALDNM-----SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK-- 177 (516)
T ss_dssp TTS----CCC-HHHHHHTGGGGTTBC-----CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--
T ss_pred CCC----cch-HHHHHHHHHHHhccc-----cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--
Confidence 111 111 122222111111000 0000000000 012357889999999643 223333222
Q ss_pred CCCCCcEEEEEeCCchh--hhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCch-HHHH
Q 045458 158 WFGPGSRILITTRDKQL--LVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPL-ALKV 234 (1170)
Q Consensus 158 ~~~~gsrIIiTTR~~~v--~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~ 234 (1170)
.+..||+++.+... .... ......+++++++.++..+.+...+....... ..+....|++.++|.+- |+..
T Consensus 178 ---~~~~iIli~~~~~~~~l~~l-~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i--~~~~l~~la~~s~GdiR~~i~~ 251 (516)
T 1sxj_A 178 ---TSTPLILICNERNLPKMRPF-DRVCLDIQFRRPDANSIKSRLMTIAIREKFKL--DPNVIDRLIQTTRGDIRQVINL 251 (516)
T ss_dssp ---CSSCEEEEESCTTSSTTGGG-TTTSEEEECCCCCHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHTTTCHHHHHHH
T ss_pred ---cCCCEEEEEcCCCCccchhh-HhceEEEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHHHHH
Confidence 23456666654321 1111 12224799999999999999887664322111 12346778899999554 4444
Q ss_pred H
Q 045458 235 L 235 (1170)
Q Consensus 235 l 235 (1170)
+
T Consensus 252 L 252 (516)
T 1sxj_A 252 L 252 (516)
T ss_dssp H
T ss_pred H
Confidence 3
No 178
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.31 E-value=7.8e-06 Score=94.46 Aligned_cols=188 Identities=15% Similarity=0.134 Sum_probs=102.9
Q ss_pred CCCccCccccchhhHHHHHHHHcC----------CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhh
Q 045458 23 EPETIKELVGIESRLEKIRFLMGT----------GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKS 92 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~ 92 (1170)
++...++++|.+..++.|.+++.. .....+-|.|+|.+|+|||++|++++...... ++..+.....
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~----~~~v~~~~l~ 185 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNAT----FFNISAASLT 185 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCE----EEEECSCCC-
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCc----EEEeeHHHhh
Confidence 344457899999999999887721 11224678999999999999999998875432 2222221111
Q ss_pred cc-CCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH-------------HHHHHhh----c
Q 045458 93 EK-EGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV-------------EQLQSLA----G 154 (1170)
Q Consensus 93 ~~-~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~-------------~~l~~l~----~ 154 (1170)
.. .+...... ...+...-..++.+|+||+++.. .....+. +
T Consensus 186 ~~~~g~~~~~~---------------------~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~ 244 (389)
T 3vfd_A 186 SKYVGEGEKLV---------------------RALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDG 244 (389)
T ss_dssp ------CHHHH---------------------HHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHH
T ss_pred ccccchHHHHH---------------------HHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhc
Confidence 00 00001111 11112222345679999999654 0111221 1
Q ss_pred CcCCCCCCcEEEEEeCCchhhhhhCCCC-ccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCch-HH
Q 045458 155 KRDWFGPGSRILITTRDKQLLVAHEVDE-EHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPL-AL 232 (1170)
Q Consensus 155 ~~~~~~~gsrIIiTTR~~~v~~~~~~~~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al 232 (1170)
.........+||.||............. ...+.++..+.++..+++...+-..... ...+....+++.+.|..- ++
T Consensus 245 ~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~~~~la~~~~g~~~~~l 322 (389)
T 3vfd_A 245 VQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP--LTQKELAQLARMTDGYSGSDL 322 (389)
T ss_dssp HC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC--SCHHHHHHHHHHTTTCCHHHH
T ss_pred ccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHH
Confidence 1111123456676776543221111111 1368899999999999998877433222 223456788888888654 55
Q ss_pred HHHHH
Q 045458 233 KVLGS 237 (1170)
Q Consensus 233 ~~l~~ 237 (1170)
..+..
T Consensus 323 ~~L~~ 327 (389)
T 3vfd_A 323 TALAK 327 (389)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 179
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.31 E-value=9e-08 Score=109.75 Aligned_cols=43 Identities=14% Similarity=0.096 Sum_probs=24.5
Q ss_pred hhhcCCcccCeEeccCcCCCc-----cCccccCCCCCCEEeccCCcCC
Q 045458 628 EIVESMEDLSELFLDGTSITE-----VPSSIELLTGLNVLNLNDCKNL 670 (1170)
Q Consensus 628 ~~~~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~L~~~~~l 670 (1170)
..+...++|+.|++++|.+.. ++..+...++|+.|+|++|...
T Consensus 205 ~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 205 AQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 334444555555555555552 3344555677777777777643
No 180
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.30 E-value=1.3e-05 Score=93.94 Aligned_cols=190 Identities=15% Similarity=0.132 Sum_probs=107.8
Q ss_pred cCCCccCccccchhhHHHHHHHHcC----------CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE-ecch
Q 045458 22 TEPETIKELVGIESRLEKIRFLMGT----------GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA-DVRE 90 (1170)
Q Consensus 22 ~~~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~-~~~~ 90 (1170)
.++..-++++|.+...+.|.+.+.. .....+-|.|+|++|+|||+||+++++.... ..|+. +...
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~----~~~~~v~~~~ 203 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN----STFFSISSSD 203 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS----SEEEEECCC-
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC----CCEEEEeHHH
Confidence 3444557899999999999887621 1123467899999999999999999987621 12222 1111
Q ss_pred hhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH-------------HHHHHhhcCcC
Q 045458 91 KSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV-------------EQLQSLAGKRD 157 (1170)
Q Consensus 91 ~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~-------------~~l~~l~~~~~ 157 (1170)
. ....... ........+...-..++.+|+||+++.. .....+.....
T Consensus 204 l--------------~~~~~g~------~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~ 263 (444)
T 2zan_A 204 L--------------VSKWLGE------SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQ 263 (444)
T ss_dssp ----------------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTT
T ss_pred H--------------Hhhhcch------HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHh
Confidence 0 0000000 0011112222222357789999999764 12344444433
Q ss_pred CC---CCCcEEEEEeCCchhhhhh-CCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCC-chHH
Q 045458 158 WF---GPGSRILITTRDKQLLVAH-EVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGL-PLAL 232 (1170)
Q Consensus 158 ~~---~~gsrIIiTTR~~~v~~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl-PLal 232 (1170)
.. ..+..||.||......... ...-...+.++..+.++..++|..++..... .........+++.+.|. +-.|
T Consensus 264 ~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~--~l~~~~l~~la~~t~G~sgadl 341 (444)
T 2zan_A 264 GVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN--SLTEADFQELGRKTDGYSGADI 341 (444)
T ss_dssp CSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE--ECCHHHHHHHHHHTTTCCHHHH
T ss_pred CcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHcCCCCHHHH
Confidence 22 3456777777665322211 1111137889999999999999887743221 11224466788888884 4455
Q ss_pred HHHHH
Q 045458 233 KVLGS 237 (1170)
Q Consensus 233 ~~l~~ 237 (1170)
..+..
T Consensus 342 ~~l~~ 346 (444)
T 2zan_A 342 SIIVR 346 (444)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 181
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.29 E-value=6.9e-08 Score=110.74 Aligned_cols=67 Identities=18% Similarity=0.092 Sum_probs=35.9
Q ss_pred ccCCCCCCEEeccCCcCCc----cccccCCCCCCCCEEEeeCcCCCC----CCccccCCCCCCcEEEccCccCCC
Q 045458 653 IELLTGLNVLNLNDCKNLV----RIPDSINGLKSLQSLNLSGCFKLE----NVPETLGQVESLEELHISGTAIRQ 719 (1170)
Q Consensus 653 i~~l~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~L~~c~~l~----~l~~~l~~l~~L~~L~L~~~~i~~ 719 (1170)
+..+++|++|+|++|.... .++..+...++|++|+|++|.... .++..+...++|++|++++|.++.
T Consensus 179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 3444555555555554322 123334445566666666664432 133334455778888888887763
No 182
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.28 E-value=1.9e-06 Score=98.18 Aligned_cols=103 Identities=15% Similarity=0.091 Sum_probs=78.2
Q ss_pred eEeccCc-CCCccCccccCCCCCCEEeccC-CcCCccccccCCCCCCCCEEEeeCcCCCCCCccccCCCCCCcEEEccCc
Q 045458 638 ELFLDGT-SITEVPSSIELLTGLNVLNLND-CKNLVRIPDSINGLKSLQSLNLSGCFKLENVPETLGQVESLEELHISGT 715 (1170)
Q Consensus 638 ~L~l~~~-~l~~lp~~i~~l~~L~~L~L~~-~~~l~~lp~~l~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~ 715 (1170)
.++++++ .++.+|. +..+++|+.|+|++ |......+..|..+++|+.|+|++|......|..+..+++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3466666 7778888 88888888888886 5444444467888888888888888655556667788899999999999
Q ss_pred cCCCCCccccCCCCCcEEEecCCCCC
Q 045458 716 AIRQPPSGIFHMKNLKALYFRGCKGS 741 (1170)
Q Consensus 716 ~i~~lp~~l~~l~~L~~L~L~~c~~~ 741 (1170)
.++.+|..+....+|+.|+|.+|+..
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCcc
Confidence 99988877665555999999988743
No 183
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.28 E-value=2.9e-06 Score=99.31 Aligned_cols=183 Identities=16% Similarity=0.148 Sum_probs=104.8
Q ss_pred cCccc-cchhhH--HHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCce--eEEEecchhhccCCcHHHH
Q 045458 27 IKELV-GIESRL--EKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGS--SFLADVREKSEKEGSVISL 101 (1170)
Q Consensus 27 ~~~~v-Gr~~~~--~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~--~~~~~~~~~~~~~~~~~~l 101 (1170)
.+.|| |..... ..+..+...... ...+.|+|.+|+||||||+.+++.+...++.. +++. . ..+
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~-~----------~~~ 171 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-S----------EKF 171 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE-H----------HHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-H----------HHH
Confidence 45676 654433 334444443222 56789999999999999999999876655332 2222 1 222
Q ss_pred HHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH----HHHHhhcCcCC-CCCCcEEEEEeCCchh--
Q 045458 102 QKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVE----QLQSLAGKRDW-FGPGSRILITTRDKQL-- 174 (1170)
Q Consensus 102 ~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~----~l~~l~~~~~~-~~~gsrIIiTTR~~~v-- 174 (1170)
..++...+.. .....+.+.++.++-+|+|||++... ..+.+...+.. ...|..||+||.....
T Consensus 172 ~~~~~~~~~~----------~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l 241 (440)
T 2z4s_A 172 LNDLVDSMKE----------GKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKL 241 (440)
T ss_dssp HHHHHHHHHT----------TCHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGC
T ss_pred HHHHHHHHHc----------ccHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHH
Confidence 3334443321 11233445555467799999995432 22222222111 1357789999886321
Q ss_pred -------hhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHH
Q 045458 175 -------LVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVL 235 (1170)
Q Consensus 175 -------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 235 (1170)
....... ..+.+++++.++..+++...+...... -..+....|++.+.|.+-.+.-+
T Consensus 242 ~~l~~~L~sR~~~g--~~i~l~~p~~e~r~~iL~~~~~~~~~~--i~~e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 242 SEFQDRLVSRFQMG--LVAKLEPPDEETRKSIARKMLEIEHGE--LPEEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp SSCCHHHHHHHHSS--BCCBCCCCCHHHHHHHHHHHHHHHTCC--CCTTHHHHHHHHCCSCHHHHHHH
T ss_pred HHHHHHHHhhccCC--eEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhcCCCHHHHHHH
Confidence 1111111 378999999999999998876422111 11234567778888887655443
No 184
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.26 E-value=6.7e-06 Score=94.44 Aligned_cols=204 Identities=14% Similarity=0.061 Sum_probs=106.2
Q ss_pred cCccccchhhHHHH---HHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHH
Q 045458 27 IKELVGIESRLEKI---RFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQK 103 (1170)
Q Consensus 27 ~~~~vGr~~~~~~l---~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 103 (1170)
.+.+||++...+.+ ...+..+....+.+.|+|++|+|||++|+++++.+....+. +.+. ................
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~-~~~~-~~~~~~~~~~~~~~~~ 120 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF-TAIA-GSEIFSLEMSKTEALT 120 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE-EEEE-GGGGSCSSSCHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc-cccc-chhhhhcccchhHHHH
Confidence 56899999887764 44444433334688999999999999999999987643221 1111 1111111111122222
Q ss_pred HHHHHHhhc--------------------CC-----C----ccccchhhHHHHHHhh-----CCC----eEEEEEeCCCC
Q 045458 104 QLLSNLLKL--------------------GD-----I----SIWHVEDGINIIGSRL-----RQK----KVLLIIDDVAD 145 (1170)
Q Consensus 104 ~ll~~l~~~--------------------~~-----~----~~~~~~~~~~~i~~~L-----~~k----~~LlVLDdv~~ 145 (1170)
+........ .. . ......+....+.+.. .++ +.+|+||+++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~ 200 (368)
T 3uk6_A 121 QAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHM 200 (368)
T ss_dssp HHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGG
T ss_pred HHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccc
Confidence 222221100 00 0 0000111222222211 123 45999999976
Q ss_pred H--HHHHHhhcCcCCCCCCcEEEEEeCC------------c-hhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCC
Q 045458 146 V--EQLQSLAGKRDWFGPGSRILITTRD------------K-QLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQP 210 (1170)
Q Consensus 146 ~--~~l~~l~~~~~~~~~gsrIIiTTR~------------~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 210 (1170)
. +..+.+......... ..++++|.. . .+.... ......+.+++++.++..+++...+-.....
T Consensus 201 l~~~~~~~L~~~le~~~~-~~~ii~t~~~~~~i~~t~~~~~~~l~~~l-~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~ 278 (368)
T 3uk6_A 201 LDIESFSFLNRALESDMA-PVLIMATNRGITRIRGTSYQSPHGIPIDL-LDRLLIVSTTPYSEKDTKQILRIRCEEEDVE 278 (368)
T ss_dssp SBHHHHHHHHHHTTCTTC-CEEEEEESCSEEECBTSSCEEETTCCHHH-HTTEEEEEECCCCHHHHHHHHHHHHHHTTCC
T ss_pred cChHHHHHHHHHhhCcCC-CeeeeecccceeeeeccCCCCcccCCHHH-HhhccEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 4 334444433332222 244545531 1 111111 1222368999999999999999877432221
Q ss_pred ChhhHHHHHHHHHHhC-CCchHHHHHH
Q 045458 211 VGEYVELSERVLEYAG-GLPLALKVLG 236 (1170)
Q Consensus 211 ~~~~~~~~~~i~~~~~-GlPLal~~l~ 236 (1170)
-..+....+++++. |.|-.+..+.
T Consensus 279 --~~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 279 --MSEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp --BCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred --CCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 23456778888887 8876655443
No 185
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.23 E-value=5.7e-06 Score=93.12 Aligned_cols=183 Identities=12% Similarity=0.139 Sum_probs=105.0
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHH
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQ 102 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 102 (1170)
.|...+++||.+..++.+.+++..+ ....++.++|++|+|||++|+++++.+... .+.+. . ...+ ... .
T Consensus 21 rP~~~~~ivg~~~~~~~l~~~l~~~-~~~~~~L~~G~~G~GKT~la~~la~~l~~~---~~~i~-~----~~~~-~~~-i 89 (324)
T 3u61_B 21 RPSTIDECILPAFDKETFKSITSKG-KIPHIILHSPSPGTGKTTVAKALCHDVNAD---MMFVN-G----SDCK-IDF-V 89 (324)
T ss_dssp CCCSTTTSCCCHHHHHHHHHHHHTT-CCCSEEEECSSTTSSHHHHHHHHHHHTTEE---EEEEE-T----TTCC-HHH-H
T ss_pred CCCCHHHHhCcHHHHHHHHHHHHcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCCC---EEEEc-c----cccC-HHH-H
Confidence 3555688999999999999999854 234678888999999999999999876422 12222 1 1111 122 2
Q ss_pred HHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH---HHHHhhcCcCCCCCCcEEEEEeCCchhhhhhC
Q 045458 103 KQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVE---QLQSLAGKRDWFGPGSRILITTRDKQLLVAHE 179 (1170)
Q Consensus 103 ~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~---~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~~ 179 (1170)
.+.+....... ...+++-+||+|+++... ..+.+.........+.++|+||....-....-
T Consensus 90 ~~~~~~~~~~~----------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l 153 (324)
T 3u61_B 90 RGPLTNFASAA----------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPL 153 (324)
T ss_dssp HTHHHHHHHBC----------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTH
T ss_pred HHHHHHHHhhc----------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHH
Confidence 22222211100 012477899999998754 34444433332345678888887654211100
Q ss_pred CCCccEEECCCCChHHHHHHHH-------HhhcCCCCCChhhHHHHHHHHHHhCCCchHHH
Q 045458 180 VDEEHILNLDVLNNDEALQLFS-------MKAFKTHQPVGEYVELSERVLEYAGGLPLALK 233 (1170)
Q Consensus 180 ~~~~~~~~l~~L~~~ea~~Lf~-------~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 233 (1170)
......+++++++.++..+++. ..+.......+ ..+....++++++|.+-.+.
T Consensus 154 ~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~-~~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 154 QSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIA-DMKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp HHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBS-CHHHHHHHHHHTCSCTTHHH
T ss_pred HhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHhCCCCHHHHH
Confidence 1112379999999888543332 22211111110 12556778888888776443
No 186
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.21 E-value=7.9e-06 Score=95.40 Aligned_cols=183 Identities=17% Similarity=0.219 Sum_probs=107.8
Q ss_pred cCCCccCccccchhhH---HHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcH
Q 045458 22 TEPETIKELVGIESRL---EKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSV 98 (1170)
Q Consensus 22 ~~~~~~~~~vGr~~~~---~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 98 (1170)
..|...+++||.+..+ ..|...+..+ ..+.+.|+|++|+||||+|+.+++.....|. -+. . ....+
T Consensus 20 ~rP~~l~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~---~l~---a---~~~~~ 88 (447)
T 3pvs_A 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADVE---RIS---A---VTSGV 88 (447)
T ss_dssp TCCCSTTTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEE---EEE---T---TTCCH
T ss_pred hCCCCHHHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeE---EEE---e---ccCCH
Confidence 3456678899999888 6788887753 4467899999999999999999987654331 111 1 11111
Q ss_pred HHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH--HHHHhhcCcCCCCCCcEEEEEe-CCch--
Q 045458 99 ISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVE--QLQSLAGKRDWFGPGSRILITT-RDKQ-- 173 (1170)
Q Consensus 99 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~--~l~~l~~~~~~~~~gsrIIiTT-R~~~-- 173 (1170)
.. ..+++.... ......++.+|+||+++... +.+.+...+.. ...++|.+| .+..
T Consensus 89 ~~-ir~~~~~a~-----------------~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~ 148 (447)
T 3pvs_A 89 KE-IREAIERAR-----------------QNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFE 148 (447)
T ss_dssp HH-HHHHHHHHH-----------------HHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGS
T ss_pred HH-HHHHHHHHH-----------------HhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccc
Confidence 11 122221111 11124578899999997642 33333333221 234455444 4432
Q ss_pred hhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCC-----CCChhhHHHHHHHHHHhCCCchHHHHHH
Q 045458 174 LLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTH-----QPVGEYVELSERVLEYAGGLPLALKVLG 236 (1170)
Q Consensus 174 v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-----~~~~~~~~~~~~i~~~~~GlPLal~~l~ 236 (1170)
+.... .....++.+++++.++..+++...+-... ....-..+....++++++|.+-.+..+.
T Consensus 149 l~~aL-~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 149 LNSAL-LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp SCHHH-HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred cCHHH-hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 11111 12234889999999999999988764311 1122334667788889999887665443
No 187
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.21 E-value=1.1e-05 Score=90.68 Aligned_cols=181 Identities=15% Similarity=0.142 Sum_probs=98.7
Q ss_pred CccCccc-cchh--hHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHH
Q 045458 25 ETIKELV-GIES--RLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISL 101 (1170)
Q Consensus 25 ~~~~~~v-Gr~~--~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 101 (1170)
...++|| |.+. ....+..++.........+.|+|++|+||||||+.+++.....-...+++. . ...
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-~----------~~~ 76 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-A----------DDF 76 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-H----------HHH
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-H----------HHH
Confidence 3456676 5433 334555555543324567899999999999999999987754311223332 1 222
Q ss_pred HHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH----HHHHhhcCcC-CCCCCcEEEEEeCCchh--
Q 045458 102 QKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVE----QLQSLAGKRD-WFGPGSRILITTRDKQL-- 174 (1170)
Q Consensus 102 ~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~----~l~~l~~~~~-~~~~gsrIIiTTR~~~v-- 174 (1170)
...+...+.. .....+.+.++ ++-+|+|||++... ..+.+...+. ....+.+||+||.....
T Consensus 77 ~~~~~~~~~~----------~~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l 145 (324)
T 1l8q_A 77 AQAMVEHLKK----------GTINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKL 145 (324)
T ss_dssp HHHHHHHHHH----------TCHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGC
T ss_pred HHHHHHHHHc----------CcHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHH
Confidence 3333333321 11122233333 36689999996532 1222221111 11346688888864321
Q ss_pred ---hhhh--CCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchH
Q 045458 175 ---LVAH--EVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLA 231 (1170)
Q Consensus 175 ---~~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 231 (1170)
.... .......+++++ +.++..+++...+...... -..+....+++++ |..-.
T Consensus 146 ~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~--l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 146 DGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLE--LRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp TTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHC-SSHHH
T ss_pred HHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHhC-CCHHH
Confidence 0000 011113799999 9999999998877432221 2235566777888 77644
No 188
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.19 E-value=7.1e-06 Score=83.82 Aligned_cols=52 Identities=12% Similarity=0.208 Sum_probs=42.9
Q ss_pred CCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 24 PETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 24 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
|...+.++||+.+++.+.+.+.. ...+.|.|+|++|+||||+|+.+++....
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccccchhhcchHHHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34456799999999999998875 33456789999999999999999987644
No 189
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.19 E-value=8.4e-06 Score=91.06 Aligned_cols=153 Identities=13% Similarity=0.113 Sum_probs=87.8
Q ss_pred ccccchhhHHHHHHHHcCC-------------CCCeEEEEEEeCCCccHHHHHHHHHhhhccccC--ceeEEE-ecchhh
Q 045458 29 ELVGIESRLEKIRFLMGTG-------------SSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFD--GSSFLA-DVREKS 92 (1170)
Q Consensus 29 ~~vGr~~~~~~l~~~L~~~-------------~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~-~~~~~~ 92 (1170)
.++|.+..++.|.+++... ......|.|+|++|+|||++|+.+++.+..... ...++. +.....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 5899999998888665421 233457899999999999999999887643211 111222 111111
Q ss_pred cc-CCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCC-----------CHHHHHHhhcCcCCCC
Q 045458 93 EK-EGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVA-----------DVEQLQSLAGKRDWFG 160 (1170)
Q Consensus 93 ~~-~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~-----------~~~~l~~l~~~~~~~~ 160 (1170)
.. .+... ......+... +.-+|+||+++ ..+.+..+........
T Consensus 112 ~~~~g~~~---------------------~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~ 167 (309)
T 3syl_A 112 GQYIGHTA---------------------PKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNR 167 (309)
T ss_dssp CSSTTCHH---------------------HHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCT
T ss_pred hhcccccH---------------------HHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCC
Confidence 00 01000 0011111111 33489999997 3334444444433334
Q ss_pred CCcEEEEEeCCchhhhhhCC------CCccEEECCCCChHHHHHHHHHhhc
Q 045458 161 PGSRILITTRDKQLLVAHEV------DEEHILNLDVLNNDEALQLFSMKAF 205 (1170)
Q Consensus 161 ~gsrIIiTTR~~~v~~~~~~------~~~~~~~l~~L~~~ea~~Lf~~~a~ 205 (1170)
.+.+||.||........... .....+.+++++.++..+++...+-
T Consensus 168 ~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 168 DDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp TTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 56788888865432111000 0114899999999999999987764
No 190
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.18 E-value=7.8e-07 Score=101.05 Aligned_cols=60 Identities=18% Similarity=0.197 Sum_probs=30.4
Q ss_pred CCCCCEEEeeCcCCCCCCcccc---CCCCCCcEEEccCccCCC-----CCccccCCCCCcEEEecCCC
Q 045458 680 LKSLQSLNLSGCFKLENVPETL---GQVESLEELHISGTAIRQ-----PPSGIFHMKNLKALYFRGCK 739 (1170)
Q Consensus 680 l~~L~~L~L~~c~~l~~l~~~l---~~l~~L~~L~L~~~~i~~-----lp~~l~~l~~L~~L~L~~c~ 739 (1170)
+++|+.|++.+|......+..+ ..+++|+.|+|+.|.+.. ++..+..+++|+.|+|++|.
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 4555555555554322111111 234566666666665553 23344456667777776665
No 191
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.14 E-value=4.7e-06 Score=94.87 Aligned_cols=82 Identities=17% Similarity=0.074 Sum_probs=41.0
Q ss_pred EecCc-cCCccCcchhcCCCCCEEeccC-CCCCCcCccccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCC
Q 045458 569 LLDGT-AIGELPLSIELLSKLVSLDLNN-CKNFKNLPVTISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSI 646 (1170)
Q Consensus 569 ~L~~~-~i~~l~~~i~~l~~L~~L~L~~-~~~l~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l 646 (1170)
+.+++ .+..+|. +..+++|+.|+|++ |......+..+..+++|+.|+|++|......|..+..+++|+.|+|++|.+
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 44444 4555555 55555555555554 332222223455555555555555544444444455555555555555555
Q ss_pred CccCc
Q 045458 647 TEVPS 651 (1170)
Q Consensus 647 ~~lp~ 651 (1170)
..+|.
T Consensus 93 ~~~~~ 97 (347)
T 2ifg_A 93 ESLSW 97 (347)
T ss_dssp SCCCS
T ss_pred ceeCH
Confidence 55544
No 192
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.07 E-value=4.7e-05 Score=84.39 Aligned_cols=181 Identities=14% Similarity=0.212 Sum_probs=101.5
Q ss_pred CCCccCccccchhhHHHHHHHHcC-----------CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchh
Q 045458 23 EPETIKELVGIESRLEKIRFLMGT-----------GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREK 91 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~ 91 (1170)
++..-++++|.+..+++|.+++.. +....+.|.|+|++|+|||+||++++...... |+. +..
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~-----~i~-v~~- 82 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-----FIS-IKG- 82 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCE-----EEE-ECH-
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCC-----EEE-EEh-
Confidence 334457799999999988877642 12334678999999999999999999876422 222 100
Q ss_pred hccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHHH----------------HHHhhcC
Q 045458 92 SEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVEQ----------------LQSLAGK 155 (1170)
Q Consensus 92 ~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~~----------------l~~l~~~ 155 (1170)
..+ .....+.. .......+.......+.+|++|+++.... ...+...
T Consensus 83 -------~~l----~~~~~g~~------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~ 145 (301)
T 3cf0_A 83 -------PEL----LTMWFGES------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTE 145 (301)
T ss_dssp -------HHH----HHHHHTTC------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHH
T ss_pred -------HHH----HhhhcCch------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHH
Confidence 111 12221111 11122333333345788999999975311 1222221
Q ss_pred cCC--CCCCcEEEEEeCCchhhhhhCC---CCccEEECCCCChHHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHHhCCCc
Q 045458 156 RDW--FGPGSRILITTRDKQLLVAHEV---DEEHILNLDVLNNDEALQLFSMKAFKTHQP-VGEYVELSERVLEYAGGLP 229 (1170)
Q Consensus 156 ~~~--~~~gsrIIiTTR~~~v~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~GlP 229 (1170)
+.. ...+..||.||.........-. .-...+.++..+.++..+++..++-..... ... ...++..+.|.|
T Consensus 146 l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~s 221 (301)
T 3cf0_A 146 MDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFS 221 (301)
T ss_dssp HHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCC
T ss_pred hhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCC
Confidence 111 1245678888876543222111 112379999999999999998776332211 111 234455566665
Q ss_pred hH
Q 045458 230 LA 231 (1170)
Q Consensus 230 La 231 (1170)
-+
T Consensus 222 g~ 223 (301)
T 3cf0_A 222 GA 223 (301)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 193
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.04 E-value=2.9e-06 Score=96.33 Aligned_cols=58 Identities=21% Similarity=0.230 Sum_probs=31.8
Q ss_pred CCCCCCCcEEEcCCCCCCCcCCCCCCCCCccEEEeeccCCccccccccc--CCCCccEEEee
Q 045458 465 IKSLNMLKVMKVSYSQSLIKIPDFTGVPNLEKLYLEGCTRLREIHPSLL--LHSKLVILNLT 524 (1170)
Q Consensus 465 l~~l~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~--~l~~L~~L~L~ 524 (1170)
+..+++|+.|.|+++..+ .++.+. +++|++|+|..|.........+. .+++|+.|+|.
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HhcCCCCcEEEEeCCCCc-eecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 445667777777666322 233332 67777777766543222222232 56677777664
No 194
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.01 E-value=3.8e-05 Score=86.91 Aligned_cols=186 Identities=13% Similarity=0.202 Sum_probs=106.4
Q ss_pred CCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccc-cCceeEEEecchhhccCCcHHHH
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE-FDGSSFLADVREKSEKEGSVISL 101 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l 101 (1170)
.|....+++|.+..++.|...+..+ +.+.+.++|+.|+||||+|+.++..+... +...+.-.+. +...+ +..+
T Consensus 20 rp~~~~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~---~~~~~-~~~i 93 (340)
T 1sxj_C 20 RPETLDEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA---SDDRG-IDVV 93 (340)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT---TSCCS-HHHH
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC---ccccc-HHHH
Confidence 3455577899999999999888764 33338999999999999999999875432 1111111111 11111 1111
Q ss_pred HHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCCch-hhhhh
Q 045458 102 QKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRDKQ-LLVAH 178 (1170)
Q Consensus 102 ~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~ 178 (1170)
. +....+..... .+.+.+-++|+|+++.. +..+.+..........+++|++|.... +....
T Consensus 94 r-~~i~~~~~~~~---------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i 157 (340)
T 1sxj_C 94 R-NQIKDFASTRQ---------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPAL 157 (340)
T ss_dssp H-THHHHHHHBCC---------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred H-HHHHHHHhhcc---------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhH
Confidence 1 11111110000 01234678899998643 333444333333345677888776543 11111
Q ss_pred CCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHH
Q 045458 179 EVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALK 233 (1170)
Q Consensus 179 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 233 (1170)
......+++.+++.++..+.+...+-..... -..+....+++.++|.+--+.
T Consensus 158 -~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~--i~~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 158 -LSQCTRFRFQPLPQEAIERRIANVLVHEKLK--LSPNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp -HTTSEEEECCCCCHHHHHHHHHHHHHTTTCC--BCHHHHHHHHHHHTTCHHHHH
T ss_pred -HhhceeEeccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 1122378999999999999888766322211 223557788889999876443
No 195
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.00 E-value=9.1e-05 Score=83.42 Aligned_cols=182 Identities=14% Similarity=0.109 Sum_probs=101.1
Q ss_pred hhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHH----H
Q 045458 34 ESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSN----L 109 (1170)
Q Consensus 34 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~----l 109 (1170)
+...+.+...+..+ .-.+.+.++|+.|+|||++|+.+++.+....... . ...+. -..-..+... +
T Consensus 8 ~~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-~--------~~c~~-c~~c~~~~~~~~~d~ 76 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQG-H--------KSCGH-CRGCQLMQAGTHPDY 76 (334)
T ss_dssp HHHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-T--------BCCSC-SHHHHHHHHTCCTTE
T ss_pred HHHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCC-C--------CCCCC-CHHHHHHhcCCCCCE
Confidence 45566777777653 2246789999999999999999998764332100 0 00000 0000000000 0
Q ss_pred hh-cCC--CccccchhhHHHHHHhh-----CCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCCch-hhhhh
Q 045458 110 LK-LGD--ISIWHVEDGINIIGSRL-----RQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRDKQ-LLVAH 178 (1170)
Q Consensus 110 ~~-~~~--~~~~~~~~~~~~i~~~L-----~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~ 178 (1170)
.. ... ......++. ..+.+.+ .+++-++|+|+++.. +..+.+...+....+++.+|++|.+.. +....
T Consensus 77 ~~~~~~~~~~~~~i~~i-r~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti 155 (334)
T 1a5t_A 77 YTLAPEKGKNTLGVDAV-REVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATL 155 (334)
T ss_dssp EEECCCTTCSSBCHHHH-HHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHH
T ss_pred EEEeccccCCCCCHHHH-HHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH
Confidence 00 000 000011111 1122222 246778999999754 344555544444456778888877654 22222
Q ss_pred CCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHH
Q 045458 179 EVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVL 235 (1170)
Q Consensus 179 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 235 (1170)
......+++++++.++..+++...+ . ...+.+..+++.++|.|..+..+
T Consensus 156 -~SRc~~~~~~~~~~~~~~~~L~~~~----~---~~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 156 -RSRCRLHYLAPPPEQYAVTWLSREV----T---MSQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp -HTTSEEEECCCCCHHHHHHHHHHHC----C---CCHHHHHHHHHHTTTCHHHHHHT
T ss_pred -hhcceeeeCCCCCHHHHHHHHHHhc----C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 1223489999999999999998775 1 11245677899999999766543
No 196
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.97 E-value=8e-05 Score=83.87 Aligned_cols=262 Identities=18% Similarity=0.188 Sum_probs=133.3
Q ss_pred CCccCccccchhhHHHHHHHHcCC---CCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHH
Q 045458 24 PETIKELVGIESRLEKIRFLMGTG---SSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVIS 100 (1170)
Q Consensus 24 ~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 100 (1170)
|...+.++|.+..++.+...+..+ ......++|+|++|+||||||+.++..+...|. ... .... .....
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~----~~s-g~~~---~~~~~ 92 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH----VTS-GPVL---VKQGD 92 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE----EEE-TTTC---CSHHH
T ss_pred CccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE----EEe-chHh---cCHHH
Confidence 445577899988888887766532 123467899999999999999999987643321 110 0000 00001
Q ss_pred HHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH--HHHHHhhcCcCCC--------C----------
Q 045458 101 LQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV--EQLQSLAGKRDWF--------G---------- 160 (1170)
Q Consensus 101 l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~--------~---------- 160 (1170)
+ ..+...+. ++-++++|+++.. ...+.+....... +
T Consensus 93 l-----------------------~~~~~~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l 148 (334)
T 1in4_A 93 M-----------------------AAILTSLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDI 148 (334)
T ss_dssp H-----------------------HHHHHHCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------
T ss_pred H-----------------------HHHHHHcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccC
Confidence 0 00111122 3346778887543 2222222111000 0
Q ss_pred CCcEEEE-EeCCchhhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHHHHhh
Q 045458 161 PGSRILI-TTRDKQLLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVLGSFL 239 (1170)
Q Consensus 161 ~gsrIIi-TTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l~~~L 239 (1170)
+...++- |++...+.......-...+.+++.+.++..+++...+-.... ....+.+..|++++.|.|-.+..+...+
T Consensus 149 ~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~--~~~~~~~~~ia~~~~G~~R~a~~ll~~~ 226 (334)
T 1in4_A 149 QPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV--EIEDAAAEMIAKRSRGTPRIAIRLTKRV 226 (334)
T ss_dssp CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred CCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 1122333 444333222111111126899999999999999887632221 2334668889999999997554333221
Q ss_pred ------cCC---CHHHHHHHHHHhhcCCCchHHHHHHhhccCCChhhhhHhhhhcccccc--cCHHHHHHHHhhCCCCcc
Q 045458 240 ------IGR---TADLWRSALERLKRDPSYKIMSILQISFDGLQGSEKKIFLDVACFFKR--WDRDYVAEILEGCGFSPV 308 (1170)
Q Consensus 240 ------~~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~--~~~~~l~~~~~~~g~~~~ 308 (1170)
.++ +.+..+.+++.+.. ...+++...+..+..++-.+++ ...+.+......+....+
T Consensus 227 ~~~a~~~~~~~It~~~v~~al~~~~~------------~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~ 294 (334)
T 1in4_A 227 RDMLTVVKADRINTDIVLKTMEVLNI------------DDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLS 294 (334)
T ss_dssp HHHHHHHTCSSBCHHHHHHHHHHHTC------------CTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHhCC------------CcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHH
Confidence 111 33344444443321 1124555555554443322222 334445444332100001
Q ss_pred chhh-hhhcccceeeeCCCceech
Q 045458 309 IGLE-VLIERSLLTVDEDNTLGMH 331 (1170)
Q Consensus 309 ~~l~-~L~~~sLi~~~~~~~~~mH 331 (1170)
...+ .|...++|+....+++-..
T Consensus 295 ~~~~~~l~~~g~i~~~~~gr~~~~ 318 (334)
T 1in4_A 295 EVYEPYLLQAGFLARTPRGRIVTE 318 (334)
T ss_dssp HHTHHHHHHTTSEEEETTEEEECH
T ss_pred HHHHHHHHHcCCeecccccHHhhH
Confidence 1111 7888999999877776433
No 197
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.94 E-value=0.00027 Score=79.79 Aligned_cols=172 Identities=17% Similarity=0.262 Sum_probs=100.2
Q ss_pred cCccccchhhHHHHHHHHcC-----------CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhcc-
Q 045458 27 IKELVGIESRLEKIRFLMGT-----------GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEK- 94 (1170)
Q Consensus 27 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~- 94 (1170)
-+++.|.+...++|.+.+.. +-...+-|.++|++|.|||.||++++......| +.....+....
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~sk~ 222 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF----IRVSGAELVQKY 222 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE----EEEEGGGGSCSS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc----eEEEhHHhhccc
Confidence 46789999999998876532 223456789999999999999999999765442 22222222111
Q ss_pred CCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH----------------HHHHhhcCcCC
Q 045458 95 EGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVE----------------QLQSLAGKRDW 158 (1170)
Q Consensus 95 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~----------------~l~~l~~~~~~ 158 (1170)
.+.-....+++ +...-...+.+|++|++|... .+..++...+.
T Consensus 223 vGese~~vr~l---------------------F~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 281 (405)
T 4b4t_J 223 IGEGSRMVREL---------------------FVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDG 281 (405)
T ss_dssp TTHHHHHHHHH---------------------HHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHH---------------------HHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhc
Confidence 11111111111 122224578999999986431 12233322222
Q ss_pred C--CCCcEEEEEeCCchhhhh-----hCCCCccEEECCCCChHHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHHhCCCc
Q 045458 159 F--GPGSRILITTRDKQLLVA-----HEVDEEHILNLDVLNNDEALQLFSMKAFKTHQP-VGEYVELSERVLEYAGGLP 229 (1170)
Q Consensus 159 ~--~~gsrIIiTTR~~~v~~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~GlP 229 (1170)
+ ..+..||.||........ -..+. .++++..+.++..++|..+.-+.... .-+ ...+++.+.|.-
T Consensus 282 ~~~~~~V~vIaATNrpd~LDpAllRpGRfD~--~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 282 FETSKNIKIIMATNRLDILDPALLRPGRIDR--KIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp TTCCCCEEEEEEESCSSSSCHHHHSTTSSCC--EEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred cCCCCCeEEEeccCChhhCCHhHcCCCcCce--EEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 2 244566777765543222 12344 89999999999999998776432221 112 345666777653
No 198
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.90 E-value=0.00026 Score=81.27 Aligned_cols=174 Identities=17% Similarity=0.307 Sum_probs=100.5
Q ss_pred cCccccchhhHHHHHHHHcC-----------CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhcc-
Q 045458 27 IKELVGIESRLEKIRFLMGT-----------GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEK- 94 (1170)
Q Consensus 27 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~- 94 (1170)
-+++.|.+..+++|.+.+.. +-...+-|.++|++|.|||+||++++......| +.....+....
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~----~~v~~s~l~sk~ 255 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF----IFSPASGIVDKY 255 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGTCCSS
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehhhhcccc
Confidence 46789999999988776532 223457789999999999999999999765432 22222222211
Q ss_pred CCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH----------------HHHHhhcCcCC
Q 045458 95 EGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVE----------------QLQSLAGKRDW 158 (1170)
Q Consensus 95 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~----------------~l~~l~~~~~~ 158 (1170)
.+........ .+...-...+.+|++|++|... .+..++...+.
T Consensus 256 ~Gese~~ir~---------------------~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 314 (437)
T 4b4t_L 256 IGESARIIRE---------------------MFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDG 314 (437)
T ss_dssp SSHHHHHHHH---------------------HHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHH---------------------HHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhc
Confidence 1111111111 1122224578999999996420 12223222221
Q ss_pred C--CCCcEEEEEeCCchhhhhhCCC---CccEEECCCCChHHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHHhCCCc
Q 045458 159 F--GPGSRILITTRDKQLLVAHEVD---EEHILNLDVLNNDEALQLFSMKAFKTHQP-VGEYVELSERVLEYAGGLP 229 (1170)
Q Consensus 159 ~--~~gsrIIiTTR~~~v~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~GlP 229 (1170)
+ ..+..||.||.........-.. -...++++..+.++..++|..+.-+.... ..+ ...+++.+.|.-
T Consensus 315 ~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 315 FDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp SSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred ccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 1 2456778888765543322211 12478999999999999998776433221 112 244566666653
No 199
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.90 E-value=0.00087 Score=77.41 Aligned_cols=60 Identities=15% Similarity=0.417 Sum_probs=37.4
Q ss_pred CCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCcccc-hhhhcCCCCCEeeccCc
Q 045458 771 LSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVSLP-ASISRLSKLECLNLNGC 833 (1170)
Q Consensus 771 l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~lp-~~i~~l~~L~~L~L~~c 833 (1170)
|.++.+|+.+.|..+ + +..-..++.++.+|+.+.|..+ ++.+. ..+.++++|+.+++.+.
T Consensus 307 F~~c~~L~~i~lp~~-v-~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 307 FAGCISLKSIDIPEG-I-TQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTTCTTCCEEECCTT-C-CEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred ecCCCCcCEEEeCCc-c-cEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 556667777777553 2 1122345677777887777543 66665 35667777777777653
No 200
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.90 E-value=0.00011 Score=79.28 Aligned_cols=182 Identities=14% Similarity=0.144 Sum_probs=94.7
Q ss_pred CCccCccccchhhHHHHHHHHcC----------CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhc
Q 045458 24 PETIKELVGIESRLEKIRFLMGT----------GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSE 93 (1170)
Q Consensus 24 ~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 93 (1170)
+...++++|.+..++++.+++.. +....+-|.|+|++|+||||+|+.+++.....| +.+. ......
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~-~~~~~~ 83 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSDFVE 83 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEEC-SCSSTT
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEe-HHHHHH
Confidence 44457899999888887765421 011234588999999999999999998764322 2221 111110
Q ss_pred c-CCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH----------------HHHHHhhcCc
Q 045458 94 K-EGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV----------------EQLQSLAGKR 156 (1170)
Q Consensus 94 ~-~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~----------------~~l~~l~~~~ 156 (1170)
. .+. ........+.......+.++++|+++.. ..+..+....
T Consensus 84 ~~~~~---------------------~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l 142 (257)
T 1lv7_A 84 MFVGV---------------------GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEM 142 (257)
T ss_dssp SCCCC---------------------CHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHH
T ss_pred Hhhhh---------------------hHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHh
Confidence 0 000 0011112223333456779999998321 1122222111
Q ss_pred CC--CCCCcEEEEEeCCchhhhhhCC---CCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCC-Cch
Q 045458 157 DW--FGPGSRILITTRDKQLLVAHEV---DEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGG-LPL 230 (1170)
Q Consensus 157 ~~--~~~gsrIIiTTR~~~v~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G-lPL 230 (1170)
.. ...+..||.||.........-. .-...+.++..+.++..+++..++-......+. ....++..+.| .+-
T Consensus 143 ~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~---~~~~la~~~~G~~~~ 219 (257)
T 1lv7_A 143 DGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI---DAAIIARGTPGFSGA 219 (257)
T ss_dssp HTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCCHH
T ss_pred hCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc---cHHHHHHHcCCCCHH
Confidence 11 1244567777766542211111 112378888889999888887765322111111 12345556666 554
Q ss_pred HHH
Q 045458 231 ALK 233 (1170)
Q Consensus 231 al~ 233 (1170)
-+.
T Consensus 220 dl~ 222 (257)
T 1lv7_A 220 DLA 222 (257)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 201
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.88 E-value=7.8e-05 Score=87.97 Aligned_cols=152 Identities=13% Similarity=0.146 Sum_probs=84.3
Q ss_pred CCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhcccc------CceeEEEecchhhccCCc
Q 045458 24 PETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEF------DGSSFLADVREKSEKEGS 97 (1170)
Q Consensus 24 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~ 97 (1170)
|...+.+|||+.+++.+...+.... ..-+.|+|.+|+|||++|+.++..+...+ ...++..+..
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------- 245 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------- 245 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred cCCCCCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--------
Confidence 3445679999999999999987532 24567999999999999999999864322 1112211111
Q ss_pred HHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHHHHHHhhcCcCCCCCCcEEEEEeCCchhhhh
Q 045458 98 VISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVEQLQSLAGKRDWFGPGSRILITTRDKQLLVA 177 (1170)
Q Consensus 98 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~ 177 (1170)
....+. ........+...-..++.+|++| ...+....+...+. ....++|.+|........
T Consensus 246 ---------~~~~g~------~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~ 306 (468)
T 3pxg_A 246 ---------TKYRGE------FEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKY 306 (468)
T ss_dssp ----------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHH
T ss_pred ---------ccccch------HHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHH
Confidence 000000 00111222233333567899999 22222233443332 234566766665442111
Q ss_pred hCC-----CCccEEECCCCChHHHHHHHHHhh
Q 045458 178 HEV-----DEEHILNLDVLNNDEALQLFSMKA 204 (1170)
Q Consensus 178 ~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a 204 (1170)
... .....+.++..+.++..+++...+
T Consensus 307 ~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 307 IEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp HTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hhcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 111 122379999999999999998765
No 202
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.85 E-value=0.00036 Score=79.77 Aligned_cols=171 Identities=18% Similarity=0.234 Sum_probs=98.0
Q ss_pred cCccccchhhHHHHHHHHcC-----------CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhcc-
Q 045458 27 IKELVGIESRLEKIRFLMGT-----------GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEK- 94 (1170)
Q Consensus 27 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~- 94 (1170)
-+++.|.+...++|.+.+.. +-...+-|.++|++|.|||+||++++.+....| +.....+....
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f----i~vs~s~L~sk~ 283 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF----IRVIGSELVQKY 283 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCCCS
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe----EEEEhHHhhccc
Confidence 36789999999998875421 224467889999999999999999999875432 22222222111
Q ss_pred CCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH----------------HHHHhhcCcCC
Q 045458 95 EGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVE----------------QLQSLAGKRDW 158 (1170)
Q Consensus 95 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~----------------~l~~l~~~~~~ 158 (1170)
.+.-....+.+ +...-...+.+|++|+++... .+..++..++.
T Consensus 284 vGesek~ir~l---------------------F~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 342 (467)
T 4b4t_H 284 VGEGARMVREL---------------------FEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDG 342 (467)
T ss_dssp SSHHHHHHHHH---------------------HHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHH---------------------HHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhc
Confidence 11111111111 222224578999999986431 11222222221
Q ss_pred C--CCCcEEEEEeCCchhhhh-h----CCCCccEEECCCCChHHHHHHHHHhhcCCCCCC-hhhHHHHHHHHHHhCCC
Q 045458 159 F--GPGSRILITTRDKQLLVA-H----EVDEEHILNLDVLNNDEALQLFSMKAFKTHQPV-GEYVELSERVLEYAGGL 228 (1170)
Q Consensus 159 ~--~~gsrIIiTTR~~~v~~~-~----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~Gl 228 (1170)
+ ..+..||.||........ . ..+. .++++..+.++..++|..++-+..... -+ ...+++.+.|.
T Consensus 343 ~~~~~~ViVIaATNrpd~LDpALlRpGRFD~--~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~Gf 414 (467)
T 4b4t_H 343 FDPRGNIKVMFATNRPNTLDPALLRPGRIDR--KVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNS 414 (467)
T ss_dssp SCCTTTEEEEEECSCTTSBCHHHHSTTTCCE--EECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSC
T ss_pred cCCCCcEEEEeCCCCcccCChhhhccccccE--EEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCC
Confidence 1 234456667755443221 1 2333 899999999999999987764322111 12 24466677765
No 203
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.84 E-value=0.00012 Score=86.23 Aligned_cols=182 Identities=16% Similarity=0.152 Sum_probs=100.0
Q ss_pred cCccccchhhHHHHHHHHcCC-----------CCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccC
Q 045458 27 IKELVGIESRLEKIRFLMGTG-----------SSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKE 95 (1170)
Q Consensus 27 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 95 (1170)
.+.++|.+..+++|.+++... ....+-|.|+|.+|+|||++|+++++..... ++..+........
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~----fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF----FFLINGPEIMSKL 278 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSE----EEEEEHHHHHTSC
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCC----EEEEEchHhhhhh
Confidence 356999999999998876531 2334668999999999999999998876322 2222222111110
Q ss_pred CcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH-------------HHHHHhhcCcC--CCC
Q 045458 96 GSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV-------------EQLQSLAGKRD--WFG 160 (1170)
Q Consensus 96 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~-------------~~l~~l~~~~~--~~~ 160 (1170)
. .. ........+.....+++.+|+||+++.. .....+...+. ...
T Consensus 279 ~--g~------------------~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~ 338 (489)
T 3hu3_A 279 A--GE------------------SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR 338 (489)
T ss_dssp T--TH------------------HHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTT
T ss_pred c--ch------------------hHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccC
Confidence 0 00 0011122233344567789999998421 11122221111 113
Q ss_pred CCcEEEEEeCCchhhh-hhCC--CCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCC-chHHHHH
Q 045458 161 PGSRILITTRDKQLLV-AHEV--DEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGL-PLALKVL 235 (1170)
Q Consensus 161 ~gsrIIiTTR~~~v~~-~~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~l 235 (1170)
.+.+||.||....... .... .-...+.++..+.++..+++..++-......+. ...++++.+.|. +-.+..+
T Consensus 339 ~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~---~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV---DLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp SCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTC---CHHHHHHTCTTCCHHHHHHH
T ss_pred CceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchh---hHHHHHHHccCCcHHHHHHH
Confidence 3556777776653211 1111 112379999999999999999877432211111 124456666664 4444444
No 204
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.83 E-value=0.0002 Score=82.18 Aligned_cols=175 Identities=15% Similarity=0.198 Sum_probs=99.1
Q ss_pred CccCccccchhhHHHHHHHHcC-----------CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhc
Q 045458 25 ETIKELVGIESRLEKIRFLMGT-----------GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSE 93 (1170)
Q Consensus 25 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 93 (1170)
..-+++.|.+...++|.+.+.. +-...+-|.++|++|.|||.||++++.+.... ++.....+...
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~----f~~v~~s~l~~ 253 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT----FLKLAAPQLVQ 253 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE----EEEEEGGGGCS
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC----EEEEehhhhhh
Confidence 3447799999999988765321 22345778999999999999999999876543 22222222221
Q ss_pred c-CCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH----------------HHHHhhcCc
Q 045458 94 K-EGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVE----------------QLQSLAGKR 156 (1170)
Q Consensus 94 ~-~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~----------------~l~~l~~~~ 156 (1170)
. .+......+.+.. ..-...+.+|++|++|... .+..++...
T Consensus 254 ~~vGese~~ir~lF~---------------------~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~l 312 (434)
T 4b4t_M 254 MYIGEGAKLVRDAFA---------------------LAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQL 312 (434)
T ss_dssp SCSSHHHHHHHHHHH---------------------HHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHH---------------------HHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHh
Confidence 1 1111122222211 1123468899999985320 122333333
Q ss_pred CCCC--CCcEEEEEeCCchhhhhhCCC---CccEEECCCCChHHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHHhCCC
Q 045458 157 DWFG--PGSRILITTRDKQLLVAHEVD---EEHILNLDVLNNDEALQLFSMKAFKTHQP-VGEYVELSERVLEYAGGL 228 (1170)
Q Consensus 157 ~~~~--~gsrIIiTTR~~~v~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~Gl 228 (1170)
+.+. .+..||.||.........-.. -...++++..+.++..++|..++-+.... .-+ ...+++.+.|.
T Consensus 313 dg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 313 DGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEF 386 (434)
T ss_dssp TTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSC
T ss_pred hccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 3222 344566677665543322111 12379999999999999998776332211 112 24466666664
No 205
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.79 E-value=0.0012 Score=76.13 Aligned_cols=124 Identities=16% Similarity=0.282 Sum_probs=61.3
Q ss_pred ccCCCCcccEEEeeCCCCCCCcchhhcCCcccCeEeccCcCCCccCc-cccCCCCCCEEeccCCcCCcccc-ccCCCCCC
Q 045458 605 TISSLKCLRSLVLSGCSKLKKFPEIVESMEDLSELFLDGTSITEVPS-SIELLTGLNVLNLNDCKNLVRIP-DSINGLKS 682 (1170)
Q Consensus 605 ~l~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~ 682 (1170)
.+..+..|+.+.+.... ...-...+.++.+|+.+.+. +.+..++. .+..+.+|+.+.|..+ ++.+. ..|.++.+
T Consensus 260 aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTT
T ss_pred eeeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCC
Confidence 44555666666654321 11222345556666666664 33444433 3455666777766532 33333 34566677
Q ss_pred CCEEEeeCcCCCCCCc-cccCCCCCCcEEEccCccCCCCCccccCCCCCcEEEec
Q 045458 683 LQSLNLSGCFKLENVP-ETLGQVESLEELHISGTAIRQPPSGIFHMKNLKALYFR 736 (1170)
Q Consensus 683 L~~L~L~~c~~l~~l~-~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~ 736 (1170)
|+.+.|..+ +..+. ..+..+.+|+.+++.++.... ..+..+.+|+.+.+.
T Consensus 336 L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 336 LERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVA 386 (394)
T ss_dssp CCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC------
T ss_pred CCEEEECcc--cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeC
Confidence 777777432 33332 356666777777766543221 233445556655554
No 206
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.78 E-value=0.00041 Score=78.51 Aligned_cols=174 Identities=17% Similarity=0.239 Sum_probs=99.3
Q ss_pred ccCccccchhhHHHHHHHHcC-----------CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhcc
Q 045458 26 TIKELVGIESRLEKIRFLMGT-----------GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEK 94 (1170)
Q Consensus 26 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 94 (1170)
.-+++.|.+...++|.+.+.. +-...+-|.++|++|.|||.||++++.+....| +..+..+....
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f----i~v~~s~l~sk 255 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF----LRIVGSELIQK 255 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE----EEEESGGGCCS
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE----EEEEHHHhhhc
Confidence 346788999999988776532 223457799999999999999999999875432 22222222211
Q ss_pred -CCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH----------------HHHHHhhcCcC
Q 045458 95 -EGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV----------------EQLQSLAGKRD 157 (1170)
Q Consensus 95 -~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~----------------~~l~~l~~~~~ 157 (1170)
.+......+.+. ...-...+.+|++|++|.. ..+..++...+
T Consensus 256 ~vGesek~ir~lF---------------------~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lD 314 (437)
T 4b4t_I 256 YLGDGPRLCRQIF---------------------KVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLD 314 (437)
T ss_dssp SSSHHHHHHHHHH---------------------HHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHH---------------------HHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhh
Confidence 111111222221 1222357899999998632 01222222222
Q ss_pred CC--CCCcEEEEEeCCchhhhhhCCC---CccEEECCCCChHHHHHHHHHhhcCCCCC-ChhhHHHHHHHHHHhCCC
Q 045458 158 WF--GPGSRILITTRDKQLLVAHEVD---EEHILNLDVLNNDEALQLFSMKAFKTHQP-VGEYVELSERVLEYAGGL 228 (1170)
Q Consensus 158 ~~--~~gsrIIiTTR~~~v~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~Gl 228 (1170)
.+ ..+..||.||.........-.. -...+.++.-+.++..++|..++-+.... .-+ ...+++.+.|.
T Consensus 315 g~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~Gf 387 (437)
T 4b4t_I 315 GFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDL 387 (437)
T ss_dssp HCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSC
T ss_pred CcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 11 2345677777665544332221 12368899999999999998776432211 112 24456666664
No 207
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.77 E-value=0.00013 Score=92.89 Aligned_cols=156 Identities=12% Similarity=0.097 Sum_probs=82.6
Q ss_pred CccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhcccc------CceeEEEecchhhccCCcH
Q 045458 25 ETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEF------DGSSFLADVREKSEKEGSV 98 (1170)
Q Consensus 25 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 98 (1170)
...+.+|||+.+++++.+.+... ..+.+.|+|.+|+||||+|+.+++.+.... ...++..+.........
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~--~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~-- 242 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAK-- 242 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCS--SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----------
T ss_pred CCCcccCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCc--
Confidence 34466999999999999988753 234578999999999999999998764321 22222222211100000
Q ss_pred HHHHHHHHHHHhhcCCCccccchhhHHHHHHhh-C-CCeEEEEEeCCCCHHH-------H---HHhhcCcCCCCCCcEEE
Q 045458 99 ISLQKQLLSNLLKLGDISIWHVEDGINIIGSRL-R-QKKVLLIIDDVADVEQ-------L---QSLAGKRDWFGPGSRIL 166 (1170)
Q Consensus 99 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L-~-~k~~LlVLDdv~~~~~-------l---~~l~~~~~~~~~gsrII 166 (1170)
...........+.+.+ . +++.+|++|+++.... + ..+..... ..+.++|
T Consensus 243 -----------------~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I 303 (854)
T 1qvr_A 243 -----------------YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLI 303 (854)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEE
T ss_pred -----------------cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEE
Confidence 0001111112222222 2 3678999999976431 1 11111111 1234566
Q ss_pred EEeCCchhhh----hhCCCCccEEECCCCChHHHHHHHHHh
Q 045458 167 ITTRDKQLLV----AHEVDEEHILNLDVLNNDEALQLFSMK 203 (1170)
Q Consensus 167 iTTR~~~v~~----~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 203 (1170)
.||....... ..-......+.++.++.++..+++...
T Consensus 304 ~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 304 GATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp EEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred EecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 6665443211 111122236899999999999998644
No 208
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.74 E-value=5.1e-05 Score=74.02 Aligned_cols=47 Identities=23% Similarity=0.242 Sum_probs=36.0
Q ss_pred ccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 29 ELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 29 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
++||++..++++.+.+..-.....-|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 68999999999888775422233457899999999999999998864
No 209
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.00044 Score=79.32 Aligned_cols=173 Identities=18% Similarity=0.249 Sum_probs=93.6
Q ss_pred cCccccchhhHHHHHHHHcC-----------CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhcc-
Q 045458 27 IKELVGIESRLEKIRFLMGT-----------GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEK- 94 (1170)
Q Consensus 27 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~- 94 (1170)
-+++.|.+...++|.+.+.. +-...+-|.++|++|+|||+||+++++.....| +..+..+....
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~----~~v~~~~l~~~~ 246 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF----IRVNGSEFVHKY 246 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE----EEEEGGGTCCSS
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe----EEEecchhhccc
Confidence 36789999999988776532 223457789999999999999999998775432 22222222111
Q ss_pred CCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH----------------HHHHhhcCcCC
Q 045458 95 EGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVE----------------QLQSLAGKRDW 158 (1170)
Q Consensus 95 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~----------------~l~~l~~~~~~ 158 (1170)
.+......+++ +...-...+.++++|+++... .+..++...+.
T Consensus 247 ~Ge~e~~ir~l---------------------F~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg 305 (428)
T 4b4t_K 247 LGEGPRMVRDV---------------------FRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDG 305 (428)
T ss_dssp CSHHHHHHHHH---------------------HHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHH---------------------HHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhC
Confidence 11111111222 122223578899999984220 12222222211
Q ss_pred --CCCCcEEEEEeCCchhhhhhCC---CCccEEECCCC-ChHHHHHHHHHhhcCCCC-CChhhHHHHHHHHHHhCCC
Q 045458 159 --FGPGSRILITTRDKQLLVAHEV---DEEHILNLDVL-NNDEALQLFSMKAFKTHQ-PVGEYVELSERVLEYAGGL 228 (1170)
Q Consensus 159 --~~~gsrIIiTTR~~~v~~~~~~---~~~~~~~l~~L-~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~Gl 228 (1170)
...+..||.||.........-. .-...++++++ +.++..++|..++-+... +..+ ...+++.+.|.
T Consensus 306 ~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~ 378 (428)
T 4b4t_K 306 FDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSL 378 (428)
T ss_dssp SCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTC
T ss_pred CCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCC
Confidence 1345567777765543222111 11236888766 556666777766533221 1112 24556666664
No 210
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.72 E-value=0.00033 Score=81.76 Aligned_cols=177 Identities=18% Similarity=0.199 Sum_probs=99.2
Q ss_pred ccCccccchhhHHHHHHHHcC----------CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccC
Q 045458 26 TIKELVGIESRLEKIRFLMGT----------GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKE 95 (1170)
Q Consensus 26 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 95 (1170)
..++++|.+..++++.+++.. +..-.+-|.|+|++|+|||+||++++.+....| +..+..+.....
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f----~~is~~~~~~~~ 89 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF----FHISGSDFVELF 89 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE----EEEEGGGTTTCC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe----eeCCHHHHHHHH
Confidence 346799999988888765431 111224488999999999999999998764322 222222211111
Q ss_pred CcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH----------------HHHHHhhcCcCCC
Q 045458 96 GSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV----------------EQLQSLAGKRDWF 159 (1170)
Q Consensus 96 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~----------------~~l~~l~~~~~~~ 159 (1170)
.. . ........+.......+.+|+||+++.. ..+..+......+
T Consensus 90 ~g-~-------------------~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~ 149 (476)
T 2ce7_A 90 VG-V-------------------GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGF 149 (476)
T ss_dssp TT-H-------------------HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHS
T ss_pred hc-c-------------------cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhcc
Confidence 00 0 0011122334444567889999998542 1233333222111
Q ss_pred --CCCcEEEEEeCCchhhhhhCC---CCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCc
Q 045458 160 --GPGSRILITTRDKQLLVAHEV---DEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLP 229 (1170)
Q Consensus 160 --~~gsrIIiTTR~~~v~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 229 (1170)
..+..||.||........... .-...+.++..+.++..+++..++-......+. ....+++.+.|..
T Consensus 150 ~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v---~l~~la~~t~G~s 221 (476)
T 2ce7_A 150 DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV---NLEIIAKRTPGFV 221 (476)
T ss_dssp CGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred CCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh---hHHHHHHhcCCCc
Confidence 245677888877654322111 112378999999999889988776432211111 1334677788876
No 211
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.71 E-value=0.00034 Score=88.21 Aligned_cols=156 Identities=16% Similarity=0.171 Sum_probs=89.1
Q ss_pred ccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccc------cCceeEEEecchhhccCCcHH
Q 045458 26 TIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE------FDGSSFLADVREKSEKEGSVI 99 (1170)
Q Consensus 26 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~~~ 99 (1170)
..+.++||+.+++++.+.+... ...-+.|+|.+|+||||+|+.+++.+... ....++..+......
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~------ 255 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA------ 255 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---C------
T ss_pred CCCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhc------
Confidence 3457999999999999998764 33456899999999999999999876332 122233222111100
Q ss_pred HHHHHHHHHHhhcCCCccccchhhHHHHHHhh-CCCeEEEEEeCCCCH----------HH-HHHhhcCcCCCCCCcEEEE
Q 045458 100 SLQKQLLSNLLKLGDISIWHVEDGINIIGSRL-RQKKVLLIIDDVADV----------EQ-LQSLAGKRDWFGPGSRILI 167 (1170)
Q Consensus 100 ~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L-~~k~~LlVLDdv~~~----------~~-l~~l~~~~~~~~~gsrIIi 167 (1170)
........+.....+.+.+ ..++.+|++|+++.. .+ ...+..... ..+.++|.
T Consensus 256 -------------~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~ 320 (758)
T 1r6b_X 256 -------------GTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIG 320 (758)
T ss_dssp -------------CCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEE
T ss_pred -------------cccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEE
Confidence 0000111122222222222 345789999999754 12 222333322 23456777
Q ss_pred EeCCchhhhhhC-----CCCccEEECCCCChHHHHHHHHHhh
Q 045458 168 TTRDKQLLVAHE-----VDEEHILNLDVLNNDEALQLFSMKA 204 (1170)
Q Consensus 168 TTR~~~v~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 204 (1170)
+|.......... ......+.++..+.++..+++...+
T Consensus 321 at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 321 STTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp EECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred EeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 776543211111 1112368999999999998887544
No 212
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.68 E-value=0.0043 Score=71.08 Aligned_cols=58 Identities=16% Similarity=0.242 Sum_probs=37.9
Q ss_pred CCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCcccch-hhhcCCCCCEeec
Q 045458 771 LSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVSLPA-SISRLSKLECLNL 830 (1170)
Q Consensus 771 l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L 830 (1170)
+.++++|+.+.+.++.+. ..-...+.++.+|+.+.|..+ ++.+.. .+.++++|+.+.+
T Consensus 282 F~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred cccccccccccccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 567778888888777653 223456788888888888643 665553 4555555555544
No 213
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.66 E-value=0.00019 Score=72.79 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=34.0
Q ss_pred cCccccc----hhhHHHHHHHHcCCC-CCeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 27 IKELVGI----ESRLEKIRFLMGTGS-SDVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 27 ~~~~vGr----~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
-++|++. ...++.+.+++..-. ...+.++|+|++|+||||||+.++..+.
T Consensus 9 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 9 LDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred cccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4556653 334444455553321 2347899999999999999999998775
No 214
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.65 E-value=0.00027 Score=78.63 Aligned_cols=49 Identities=18% Similarity=0.284 Sum_probs=38.3
Q ss_pred CccccchhhHHHHHHHHcC------------CCCCeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 28 KELVGIESRLEKIRFLMGT------------GSSDVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 28 ~~~vGr~~~~~~l~~~L~~------------~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
+.++|.+..++.+...+.. .......+.|+|.+|+|||++|+.+++...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999988877643 011235678999999999999999998763
No 215
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.64 E-value=4.6e-05 Score=83.03 Aligned_cols=157 Identities=18% Similarity=0.234 Sum_probs=85.9
Q ss_pred CCccCccccchhhHHHHHHHHcC----------CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhc
Q 045458 24 PETIKELVGIESRLEKIRFLMGT----------GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSE 93 (1170)
Q Consensus 24 ~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 93 (1170)
+...++++|.+..++++.+++.. +....+-|.|+|++|+|||++|+++++.....|-. + +......
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~---v-~~~~~~~ 82 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS---M-GGSSFIE 82 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC---C-CSCTTTT
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---e-chHHHHH
Confidence 34457899999999888876641 11112347899999999999999999876433211 1 1111000
Q ss_pred cCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH-----------------HHHHhhcCc
Q 045458 94 KEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVE-----------------QLQSLAGKR 156 (1170)
Q Consensus 94 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~-----------------~l~~l~~~~ 156 (1170)
. .. . ......... +......++.+|+||+++... .+..+....
T Consensus 83 ~--------------~~-~--~~~~~~~~~---~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l 142 (268)
T 2r62_A 83 M--------------FV-G--LGASRVRDL---FETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEM 142 (268)
T ss_dssp S--------------CS-S--SCSSSSSTT---HHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTT
T ss_pred h--------------hc-c--hHHHHHHHH---HHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHh
Confidence 0 00 0 000111112 222223466799999996531 122333333
Q ss_pred CCCC---CCcEEEEEeCCchhhhhhCCC---CccEEECCCCChHHHHHHHHHhh
Q 045458 157 DWFG---PGSRILITTRDKQLLVAHEVD---EEHILNLDVLNNDEALQLFSMKA 204 (1170)
Q Consensus 157 ~~~~---~gsrIIiTTR~~~v~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~a 204 (1170)
.... ....||.||............ -...+.++..+.++..+++...+
T Consensus 143 ~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 143 DGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp TCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred hCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 2221 234677777655422211111 11368888899999988887665
No 216
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.58 E-value=0.00012 Score=75.95 Aligned_cols=62 Identities=11% Similarity=0.119 Sum_probs=41.3
Q ss_pred CccCccccchh----hHHHHHHHHcCCCCC--eEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 25 ETIKELVGIES----RLEKIRFLMGTGSSD--VRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 25 ~~~~~~vGr~~----~~~~l~~~L~~~~~~--~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
...++|++.+. .++.+.+++...... .+.+.|+|.+|+||||||+++++....+....+++.
T Consensus 22 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 22 ASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 34567887653 334455555433221 267899999999999999999998765544445544
No 217
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.54 E-value=0.00036 Score=87.89 Aligned_cols=151 Identities=15% Similarity=0.172 Sum_probs=84.8
Q ss_pred CccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhcccc------CceeEEEecchhhccCCcH
Q 045458 25 ETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEF------DGSSFLADVREKSEKEGSV 98 (1170)
Q Consensus 25 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 98 (1170)
...+.+|||+.+++++...+... ...-+.++|.+|+|||++|+.+++.+.... ...++..+. +.
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~~--~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-------g~- 246 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-------GT- 246 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCCCCccCchHHHHHHHHHHhCC--CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------cc-
Confidence 34467999999999999998753 224478999999999999999998763321 111221111 00
Q ss_pred HHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHHHHHHhhcCcCCCCCCcEEEEEeCCchhhhhh
Q 045458 99 ISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVEQLQSLAGKRDWFGPGSRILITTRDKQLLVAH 178 (1170)
Q Consensus 99 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~~~~ 178 (1170)
... + .........+......++.+|++| ...+....+.+.+. ....++|.||.........
T Consensus 247 ---------~~~---G---~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~ 307 (758)
T 3pxi_A 247 ---------KYR---G---EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYI 307 (758)
T ss_dssp ---------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHH
T ss_pred ---------ccc---c---hHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHh
Confidence 000 0 001112223333334678899999 22222333444333 2346777777655421111
Q ss_pred CCC-----CccEEECCCCChHHHHHHHHHhh
Q 045458 179 EVD-----EEHILNLDVLNNDEALQLFSMKA 204 (1170)
Q Consensus 179 ~~~-----~~~~~~l~~L~~~ea~~Lf~~~a 204 (1170)
..+ ....+.++..+.++..+++...+
T Consensus 308 ~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 111 12479999999999999998654
No 218
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.48 E-value=6.2e-05 Score=74.92 Aligned_cols=86 Identities=10% Similarity=0.133 Sum_probs=47.2
Q ss_pred CceeEEEccCCChHHH-hhcCCCCCCCcEEEcCCCCCCCcC--CCCCCC----CCccEEEeeccCCccc-ccccccCCCC
Q 045458 446 DKTIEFKMLCSRIEEL-WKGIKSLNMLKVMKVSYSQSLIKI--PDFTGV----PNLEKLYLEGCTRLRE-IHPSLLLHSK 517 (1170)
Q Consensus 446 ~~L~~L~L~~s~i~~L-~~~l~~l~~L~~L~Ls~~~~l~~~--~~~~~l----~~L~~L~L~~~~~l~~-~~~~i~~l~~ 517 (1170)
.+|++|+++++.|... ...+..+++|+.|+|++|..+++- ..++.+ ++|++|+|++|..++. --..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 3455666665555432 133456777777777777654431 123332 3577777777665442 1223455666
Q ss_pred ccEEEeeCCCCCCc
Q 045458 518 LVILNLTGCTSLAT 531 (1170)
Q Consensus 518 L~~L~L~~c~~l~~ 531 (1170)
|+.|++++|..++.
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 66666666665554
No 219
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.44 E-value=0.0001 Score=73.33 Aligned_cols=92 Identities=11% Similarity=0.199 Sum_probs=62.8
Q ss_pred cCCCCCCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCC-Cccc-chhhhcC----CCCCEeeccCccCCCc-
Q 045458 766 SFPPSLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNS-FVSL-PASISRL----SKLECLNLNGCKKLQS- 838 (1170)
Q Consensus 766 ~lp~~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~-l~~l-p~~i~~l----~~L~~L~L~~c~~L~~- 838 (1170)
.+|.....-..|+.||+++|.+++..+ ..+..+++|+.|+|++|. ++.- -..+..+ ++|++|+|++|++++.
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 344433344579999999999865433 456889999999999995 6521 1233443 4799999999987754
Q ss_pred ----CCCCCcccceeeccCCcCCcc
Q 045458 839 ----LPPLPARMRIASVNGCASLET 859 (1170)
Q Consensus 839 ----lp~lp~sL~~L~i~~C~~L~~ 859 (1170)
+..+ ++|+.|++++|+.++.
T Consensus 131 Gl~~L~~~-~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 131 GIIALHHF-RNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHGGGC-TTCCEEEEESCTTCCC
T ss_pred HHHHHhcC-CCCCEEECCCCCCCCc
Confidence 3333 5677777777776654
No 220
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.39 E-value=0.001 Score=73.95 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=38.7
Q ss_pred ccccchhhHHHHHHHHcCCC-------CCeEEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 29 ELVGIESRLEKIRFLMGTGS-------SDVRMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 29 ~~vGr~~~~~~l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
.++|.+..++.+...+.... .....+.|+|.+|+|||++|+.++.....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 58899999988887765421 11357999999999999999999987643
No 221
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.39 E-value=0.0008 Score=74.00 Aligned_cols=28 Identities=32% Similarity=0.628 Sum_probs=24.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
.++.+.++|++|+|||+||+++++....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~ 62 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGI 62 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4568899999999999999999998743
No 222
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.39 E-value=0.0023 Score=68.73 Aligned_cols=157 Identities=18% Similarity=0.176 Sum_probs=82.0
Q ss_pred CCCccCccccchhhHHHHHHHHcCC---------C-CCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhh
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTG---------S-SDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKS 92 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~---------~-~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~ 92 (1170)
+....++++|.+....++..+...- + .-.+-++|+|.+|+||||||+.++...... .+.+. .....
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~---~i~~~-~~~~~ 86 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITAS-GSDFV 86 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCC---EEEEE-HHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC---EEEee-HHHHH
Confidence 3444578999988777776543210 0 111238999999999999999999876421 22222 11110
Q ss_pred ccCCcHHHHHHHHHHHHhhcCCCccccchhhHH-HHHHhhCCCeEEEEEeCCCCHH----------------HHHHhhcC
Q 045458 93 EKEGSVISLQKQLLSNLLKLGDISIWHVEDGIN-IIGSRLRQKKVLLIIDDVADVE----------------QLQSLAGK 155 (1170)
Q Consensus 93 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~-~i~~~L~~k~~LlVLDdv~~~~----------------~l~~l~~~ 155 (1170)
.... . .....+. .++..-...+.++++|+++... .+..+...
T Consensus 87 ~~~~--~-------------------~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~ 145 (254)
T 1ixz_A 87 EMFV--G-------------------VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVE 145 (254)
T ss_dssp HSCT--T-------------------HHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHH
T ss_pred HHHh--h-------------------HHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHH
Confidence 0000 0 0001111 1222222456799999984321 12222221
Q ss_pred cCCC--CCCcEEEEEeCCchhhhhhCC---CCccEEECCCCChHHHHHHHHHhh
Q 045458 156 RDWF--GPGSRILITTRDKQLLVAHEV---DEEHILNLDVLNNDEALQLFSMKA 204 (1170)
Q Consensus 156 ~~~~--~~gsrIIiTTR~~~v~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a 204 (1170)
+... .....++.||.........-. .-...+.++..+.++..+++..++
T Consensus 146 l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 146 MDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp HHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred HhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 1111 122345556666554332211 112378999999999888887665
No 223
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.37 E-value=0.00087 Score=73.88 Aligned_cols=146 Identities=13% Similarity=0.041 Sum_probs=86.5
Q ss_pred cchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhh---ccccCceeEEEecchhhccCCcHHHHHHHHHHH
Q 045458 32 GIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSM---SYEFDGSSFLADVREKSEKEGSVISLQKQLLSN 108 (1170)
Q Consensus 32 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~---~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 108 (1170)
|-+..++.|...+..+. .+...++|+.|+||||+|+.+++.. ....+....+. . ...... .+..+++...
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~-~---~~~~~~-id~ir~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID-P---EGENIG-IDDIRTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC-C---SSSCBC-HHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc-C---CcCCCC-HHHHHHHHHH
Confidence 44566778888887653 6789999999999999999998752 11122222222 1 110111 1222233333
Q ss_pred HhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH--HHHHHhhcCcCCCCCCcEEEEEeCCch-hhhhhCCCCccE
Q 045458 109 LLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV--EQLQSLAGKRDWFGPGSRILITTRDKQ-LLVAHEVDEEHI 185 (1170)
Q Consensus 109 l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~~~~gsrIIiTTR~~~-v~~~~~~~~~~~ 185 (1170)
+... -..+++-++|+|+++.. +..+++...+....+.+.+|++|.++. +..... .. .
T Consensus 74 ~~~~-----------------p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~-SR--~ 133 (305)
T 2gno_A 74 LNYS-----------------PELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIK-SR--V 133 (305)
T ss_dssp HTSC-----------------CSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHH-TT--S
T ss_pred Hhhc-----------------cccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHH-ce--e
Confidence 2210 01235668899999753 445555544444456788888776543 333222 22 8
Q ss_pred EECCCCChHHHHHHHHHhh
Q 045458 186 LNLDVLNNDEALQLFSMKA 204 (1170)
Q Consensus 186 ~~l~~L~~~ea~~Lf~~~a 204 (1170)
+++++++.++..+++...+
T Consensus 134 ~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 134 FRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEEECCCCHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHh
Confidence 9999999999999998776
No 224
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.37 E-value=0.00096 Score=78.46 Aligned_cols=50 Identities=26% Similarity=0.298 Sum_probs=38.2
Q ss_pred cCccccchhhHHHHHHHH---cCCCCCeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 27 IKELVGIESRLEKIRFLM---GTGSSDVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 27 ~~~~vGr~~~~~~l~~~L---~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
.+.+||.+..++.+..++ ..+....+-+.++|++|+|||++|+++++...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 478999998887665443 33323335688999999999999999998764
No 225
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.35 E-value=8.1e-05 Score=72.34 Aligned_cols=49 Identities=12% Similarity=0.109 Sum_probs=34.3
Q ss_pred CccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 28 KELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 28 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
-.++|++..++++.+.+........-|.|+|.+|+|||++|+.+++...
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 3589999999888877653212224478999999999999999987543
No 226
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.33 E-value=2.4e-05 Score=79.87 Aligned_cols=61 Identities=10% Similarity=0.081 Sum_probs=36.0
Q ss_pred CCCcCEEeccCCCCCCCC---CcCccCCCCCCCEEEC--cCCCCcc-----cchhhhcCCCCCEeeccCcc
Q 045458 774 LYSLTKLDLSDCDLGEGF---IPNDIGNLRSLKVLCL--SNNSFVS-----LPASISRLSKLECLNLNGCK 834 (1170)
Q Consensus 774 l~~L~~L~Ls~c~l~~~~---~~~~l~~l~sL~~L~L--s~n~l~~-----lp~~i~~l~~L~~L~L~~c~ 834 (1170)
.++|+.|+|++|.+.+.. +...+...++|++|+| ++|.+.. +...+...+.|++|+|++|.
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 345666777766664321 2334555667777777 6676652 44455566677777776653
No 227
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.27 E-value=0.0014 Score=81.00 Aligned_cols=175 Identities=16% Similarity=0.183 Sum_probs=98.5
Q ss_pred CccccchhhHHHHHHHHcC-----------CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhcc-C
Q 045458 28 KELVGIESRLEKIRFLMGT-----------GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEK-E 95 (1170)
Q Consensus 28 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~-~ 95 (1170)
+++.|.+..+++|.+++.. +....+-|.++|++|+|||+||++++++.... .+..+..+.... .
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~----~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF----FFLINGPEIMSKLA 279 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE----EEEEEHHHHHSSCT
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe----EEEEEhHHhhcccc
Confidence 5688999999988876532 11335779999999999999999999876433 232222221111 1
Q ss_pred CcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH-------------HHHHhhcCcCCC--C
Q 045458 96 GSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVE-------------QLQSLAGKRDWF--G 160 (1170)
Q Consensus 96 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~-------------~l~~l~~~~~~~--~ 160 (1170)
+. ........+....+..+.+|+||+++..- ....+....... .
T Consensus 280 ge---------------------se~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~ 338 (806)
T 3cf2_A 280 GE---------------------SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR 338 (806)
T ss_dssp TH---------------------HHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGG
T ss_pred hH---------------------HHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccccc
Confidence 11 01111222333445678999999985421 122222221111 1
Q ss_pred CCcEEEEEeCCchhhhh-hCC--CCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCCch
Q 045458 161 PGSRILITTRDKQLLVA-HEV--DEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGLPL 230 (1170)
Q Consensus 161 ~gsrIIiTTR~~~v~~~-~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 230 (1170)
.+..||.||........ ... .-.+.++++..+.++..++|..+.-+.....+ .....+++.+.|.--
T Consensus 339 ~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~d---vdl~~lA~~T~Gfsg 408 (806)
T 3cf2_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGHVG 408 (806)
T ss_dssp GCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTT---CCHHHHHHHCCSCCH
T ss_pred CCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcc---cCHHHHHHhcCCCCH
Confidence 34456666655432221 111 11237999999999999999877632221111 013456777777643
No 228
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.27 E-value=0.002 Score=69.82 Aligned_cols=50 Identities=18% Similarity=0.098 Sum_probs=34.7
Q ss_pred cCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 27 IKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 27 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
.+.+||.+..+.++.+.+.........|.|+|.+|+|||++|+.+++...
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred cccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 35689999998888766543222235678999999999999999998654
No 229
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.26 E-value=0.0055 Score=66.78 Aligned_cols=156 Identities=19% Similarity=0.184 Sum_probs=82.6
Q ss_pred CCCccCccccchhhHHHHHHHHcCC---------C-CCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhh
Q 045458 23 EPETIKELVGIESRLEKIRFLMGTG---------S-SDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKS 92 (1170)
Q Consensus 23 ~~~~~~~~vGr~~~~~~l~~~L~~~---------~-~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~ 92 (1170)
++...++++|.+...+++..+...- + .-.+-|+|+|++|+||||||+.++..... ..+.+. .....
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~---~~i~~~-~~~~~ 110 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFV 110 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC---CEEEec-HHHHH
Confidence 3444578999998877776554210 0 01122899999999999999999987642 122222 11110
Q ss_pred ccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH----------------HHHHHhhcCc
Q 045458 93 EKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV----------------EQLQSLAGKR 156 (1170)
Q Consensus 93 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~----------------~~l~~l~~~~ 156 (1170)
.... ... .......++..-...+.++|+|+++.. ..+..+...+
T Consensus 111 ~~~~--~~~------------------~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l 170 (278)
T 1iy2_A 111 EMFV--GVG------------------AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 170 (278)
T ss_dssp HSTT--THH------------------HHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHH
T ss_pred HHHh--hHH------------------HHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHH
Confidence 0000 000 000111122222245679999998422 1122222222
Q ss_pred CCC--CCCcEEEEEeCCchhhhhh-----CCCCccEEECCCCChHHHHHHHHHhh
Q 045458 157 DWF--GPGSRILITTRDKQLLVAH-----EVDEEHILNLDVLNNDEALQLFSMKA 204 (1170)
Q Consensus 157 ~~~--~~gsrIIiTTR~~~v~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a 204 (1170)
... .....++.||......... ..+. .++++..+.++..+++..++
T Consensus 171 sgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~--~i~i~~p~~~~r~~il~~~~ 223 (278)
T 1iy2_A 171 DGFEKDTAIVVMAATNRPDILDPALLRPGRFDR--QIAIDAPDVKGREQILRIHA 223 (278)
T ss_dssp TTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCC--EEECCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCCEEEEEecCCchhCCHhHcCCCcCCe--EEEeCCcCHHHHHHHHHHHH
Confidence 211 1223455566655443221 2233 78999999999999888765
No 230
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.24 E-value=0.033 Score=63.57 Aligned_cols=87 Identities=17% Similarity=0.227 Sum_probs=58.2
Q ss_pred CCCCCCCcCEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCcccch-hhhcCCCCCEeeccCccCCCcCCCCCcccce
Q 045458 770 SLSGLYSLTKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVSLPA-SISRLSKLECLNLNGCKKLQSLPPLPARMRI 848 (1170)
Q Consensus 770 ~l~~l~~L~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~ 848 (1170)
.+.++.+|+.+.+..+ + ...-...+.++++|+.+.+.++.++.++. .+.++++|+.+.|.. .++.|+.
T Consensus 258 aF~~~~~l~~i~l~~~-i-~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~------- 326 (379)
T 4h09_A 258 LLQNCTALKTLNFYAK-V-KTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQV------- 326 (379)
T ss_dssp TTTTCTTCCEEEECCC-C-SEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECT-------
T ss_pred ccceeehhcccccccc-c-eeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc--cccEEHH-------
Confidence 4667788888888654 2 12233467888999999999888888764 567788888887742 2333332
Q ss_pred eeccCCcCCcccCCccccc
Q 045458 849 ASVNGCASLETLSDPLELN 867 (1170)
Q Consensus 849 L~i~~C~~L~~l~~~~~~~ 867 (1170)
--..+|.+|+++..+..+.
T Consensus 327 ~aF~~C~~L~~i~ip~~v~ 345 (379)
T 4h09_A 327 YAFKNCKALSTISYPKSIT 345 (379)
T ss_dssp TTTTTCTTCCCCCCCTTCC
T ss_pred HHhhCCCCCCEEEECCccC
Confidence 1245788888876554433
No 231
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.21 E-value=0.002 Score=77.16 Aligned_cols=158 Identities=15% Similarity=0.156 Sum_probs=78.1
Q ss_pred cccchhhHHHHHHHHcC----CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHH
Q 045458 30 LVGIESRLEKIRFLMGT----GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQL 105 (1170)
Q Consensus 30 ~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 105 (1170)
.+|.+...+.+.+.+.. .......++|+|++|+||||||+.++......|-. + ++...... . .+
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~---i-~~~~~~~~----~----~~ 150 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVR---I-SLGGVRDE----S----EI 150 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEE---E-CCCC---------------
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEE---E-Eecccchh----h----hh
Confidence 67877776666443321 11234689999999999999999999876443221 1 11110000 0 00
Q ss_pred HHHHhhcCCCccccch-hhHHHHHHhhCCCeEEEEEeCCCCHHH------HHHhhcCcCCC---------------CCCc
Q 045458 106 LSNLLKLGDISIWHVE-DGINIIGSRLRQKKVLLIIDDVADVEQ------LQSLAGKRDWF---------------GPGS 163 (1170)
Q Consensus 106 l~~l~~~~~~~~~~~~-~~~~~i~~~L~~k~~LlVLDdv~~~~~------l~~l~~~~~~~---------------~~gs 163 (1170)
.... ........ .....+.......+ +++||+++.... ...+...+... -...
T Consensus 151 ~g~~----~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v 225 (543)
T 3m6a_A 151 RGHR----RTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKV 225 (543)
T ss_dssp -----------------CHHHHHHTTCSSSE-EEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSC
T ss_pred hhHH----HHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccce
Confidence 0000 00000111 11222333323344 888999975421 12333222110 0345
Q ss_pred EEEEEeCCchhhhhhCCCCccEEECCCCChHHHHHHHHHhh
Q 045458 164 RILITTRDKQLLVAHEVDEEHILNLDVLNNDEALQLFSMKA 204 (1170)
Q Consensus 164 rIIiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 204 (1170)
+||.||.........-......+++++++.++-.+++..+.
T Consensus 226 ~iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 226 LFIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EEEEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred EEEeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 67777765442211111122378999999999998887765
No 232
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.16 E-value=0.0018 Score=71.54 Aligned_cols=48 Identities=17% Similarity=0.242 Sum_probs=37.9
Q ss_pred CccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 28 KELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 28 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
+.++|++..+.++.+.+.........|.|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 468999999998887775433333457899999999999999999854
No 233
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.07 E-value=0.00014 Score=74.06 Aligned_cols=11 Identities=9% Similarity=0.021 Sum_probs=5.1
Q ss_pred CCCCEEEeeCc
Q 045458 681 KSLQSLNLSGC 691 (1170)
Q Consensus 681 ~~L~~L~L~~c 691 (1170)
++|++|++++|
T Consensus 151 ~~L~~L~L~~n 161 (185)
T 1io0_A 151 TTLLKFGYHFT 161 (185)
T ss_dssp SSCCEEECCCS
T ss_pred CCcCEEeccCC
Confidence 44444444444
No 234
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.05 E-value=0.0032 Score=73.96 Aligned_cols=175 Identities=17% Similarity=0.166 Sum_probs=93.2
Q ss_pred CCccCccccchhhHHHHHHHHcC---C-------CCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhc
Q 045458 24 PETIKELVGIESRLEKIRFLMGT---G-------SSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSE 93 (1170)
Q Consensus 24 ~~~~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 93 (1170)
....++++|.+..+.++.++... . ..-.+-|.|+|++|+||||||++++...... .+.+. ......
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~---~i~i~-g~~~~~ 102 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITAS-GSDFVE 102 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCC---EEEEE-GGGGTS
T ss_pred CCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEEe-hhHHHH
Confidence 33457899999888877765421 0 0112338999999999999999999876421 12222 211111
Q ss_pred cCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhC----CCeEEEEEeCCCCH----------------HHHHHhh
Q 045458 94 KEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLR----QKKVLLIIDDVADV----------------EQLQSLA 153 (1170)
Q Consensus 94 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~----~k~~LlVLDdv~~~----------------~~l~~l~ 153 (1170)
.. .......+...++ ..+.++++|+++.. ..+..+.
T Consensus 103 ~~------------------------~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL 158 (499)
T 2dhr_A 103 MF------------------------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL 158 (499)
T ss_dssp SC------------------------TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHH
T ss_pred hh------------------------hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHH
Confidence 10 0011112222222 24579999998532 1123333
Q ss_pred cCcCCC--CCCcEEEEEeCCchhhhhhCCC---CccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHhCCC
Q 045458 154 GKRDWF--GPGSRILITTRDKQLLVAHEVD---EEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYAGGL 228 (1170)
Q Consensus 154 ~~~~~~--~~gsrIIiTTR~~~v~~~~~~~---~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 228 (1170)
..+..+ ..+..|+.||.........-.. -...+.++..+.++..+++..++-+.....+. ....++..+.|.
T Consensus 159 ~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv---~l~~lA~~t~G~ 235 (499)
T 2dhr_A 159 VEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV---DLALLAKRTPGF 235 (499)
T ss_dssp HHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSS---TTHHHHTTSCSC
T ss_pred HHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHH---HHHHHHHhcCCC
Confidence 222211 2344566666665543321111 12378999999999999998776322111111 123455666666
Q ss_pred c
Q 045458 229 P 229 (1170)
Q Consensus 229 P 229 (1170)
.
T Consensus 236 ~ 236 (499)
T 2dhr_A 236 V 236 (499)
T ss_dssp C
T ss_pred C
Confidence 5
No 235
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.04 E-value=0.011 Score=63.93 Aligned_cols=152 Identities=14% Similarity=0.125 Sum_probs=79.9
Q ss_pred cCccccchhhHHHHHHHHcC-----------CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccC
Q 045458 27 IKELVGIESRLEKIRFLMGT-----------GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKE 95 (1170)
Q Consensus 27 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 95 (1170)
-+++.|.+...++|.+.+.. +-.-.+-++|+|++|+||||||+.++...... .+.+. ..+.....
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~---~i~i~-g~~l~~~~ 84 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLN---FISVK-GPELLNMY 84 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCE---EEEEE-TTTTCSST
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCC---EEEEE-cHHHHhhh
Confidence 35678888887777664311 00111228999999999999999999865432 22222 11111110
Q ss_pred CcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCHH-------------HHHHhhcCcCC--CC
Q 045458 96 GSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADVE-------------QLQSLAGKRDW--FG 160 (1170)
Q Consensus 96 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~-------------~l~~l~~~~~~--~~ 160 (1170)
. .... ..+.. .++..-...+.++++|+++... ....+...+.. ..
T Consensus 85 -~-~~~~-~~i~~-----------------vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~ 144 (274)
T 2x8a_A 85 -V-GESE-RAVRQ-----------------VFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEAR 144 (274)
T ss_dssp -T-HHHH-HHHHH-----------------HHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCST
T ss_pred -h-hHHH-HHHHH-----------------HHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccccc
Confidence 0 1110 01111 1111112456789999986421 01111111110 12
Q ss_pred CCcEEEEEeCCchhhhhh-----CCCCccEEECCCCChHHHHHHHHHhh
Q 045458 161 PGSRILITTRDKQLLVAH-----EVDEEHILNLDVLNNDEALQLFSMKA 204 (1170)
Q Consensus 161 ~gsrIIiTTR~~~v~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a 204 (1170)
...-++.+|....+.... ..+ ..+.++..+.++..+++..+.
T Consensus 145 ~~~i~ia~tn~p~~LD~al~r~gRfd--~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 145 QQVFIMAATNRPDIIDPAILRPGRLD--KTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp TCEEEEEEESCGGGSCHHHHSTTSSC--EEEECCSCCHHHHHHHHHHHT
T ss_pred CCEEEEeecCChhhCCHhhcCcccCC--eEEEeCCcCHHHHHHHHHHHH
Confidence 334566677766554332 233 378899999999999998765
No 236
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.94 E-value=0.00061 Score=66.45 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=23.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
-..++|+|..|.|||||++.++.....
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 367899999999999999999987654
No 237
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.93 E-value=0.0027 Score=79.86 Aligned_cols=152 Identities=16% Similarity=0.229 Sum_probs=85.8
Q ss_pred cCccccchhhHHHHHHHHcC-----------CCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhcc-
Q 045458 27 IKELVGIESRLEKIRFLMGT-----------GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEK- 94 (1170)
Q Consensus 27 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~- 94 (1170)
.++++|.+..+++|.+++.. +....+.|.|+|.+|+||||||+.++......| +.+. ..+....
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v~-~~~l~~~~ 278 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPEIMSKL 278 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEEE-HHHHSSSS
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEEE-chHhhhhh
Confidence 36799999999999887743 223346789999999999999999998764332 2222 1111111
Q ss_pred CCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH----------------HHHHHhhcCcCC
Q 045458 95 EGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV----------------EQLQSLAGKRDW 158 (1170)
Q Consensus 95 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~----------------~~l~~l~~~~~~ 158 (1170)
.+... ......++......+.++++|+++.. .++-.+.....
T Consensus 279 ~g~~~---------------------~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~- 336 (806)
T 1ypw_A 279 AGESE---------------------SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK- 336 (806)
T ss_dssp TTHHH---------------------HHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-
T ss_pred hhhHH---------------------HHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-
Confidence 01000 01111222333346789999998421 11222222211
Q ss_pred CCCCcEEEEEeCCchhhhhhCC---CCccEEECCCCChHHHHHHHHHhh
Q 045458 159 FGPGSRILITTRDKQLLVAHEV---DEEHILNLDVLNNDEALQLFSMKA 204 (1170)
Q Consensus 159 ~~~gsrIIiTTR~~~v~~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a 204 (1170)
...+..+|.||.+......... .-...+.+...+.++..+++..++
T Consensus 337 ~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 337 QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp TTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred ccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 1234566767766432221111 111367888889999999988765
No 238
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.74 E-value=0.0013 Score=70.50 Aligned_cols=68 Identities=26% Similarity=0.292 Sum_probs=53.7
Q ss_pred CCCCCcCEEeccCCCCCCC-CCcCccCCCCCCCEEECcCCCCcccchhhhcCC--CCCEeeccCccCCCcCC
Q 045458 772 SGLYSLTKLDLSDCDLGEG-FIPNDIGNLRSLKVLCLSNNSFVSLPASISRLS--KLECLNLNGCKKLQSLP 840 (1170)
Q Consensus 772 ~~l~~L~~L~Ls~c~l~~~-~~~~~l~~l~sL~~L~Ls~n~l~~lp~~i~~l~--~L~~L~L~~c~~L~~lp 840 (1170)
..+++|+.|+|++|.+..- .++..+..+++|+.|+|++|.+..+. .+..+. +|+.|+|++|+.-..+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 3577899999999998541 34466678999999999999999874 345555 99999999998766565
No 239
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.67 E-value=0.0045 Score=77.87 Aligned_cols=150 Identities=14% Similarity=0.187 Sum_probs=81.8
Q ss_pred CccccchhhHHHHHHHHcCCC-------CCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHH
Q 045458 28 KELVGIESRLEKIRFLMGTGS-------SDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVIS 100 (1170)
Q Consensus 28 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 100 (1170)
..++|.+..++.+...+.... .....+.++|++|+|||++|+++++.....-...+.+ +..+....... .
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i-~~s~~~~~~~~-~- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRI-DMSEYMEKHST-S- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEE-EGGGGCSSCCC-C-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEE-echhccccccc-c-
Confidence 458999998888877665321 1123689999999999999999998763332222333 23333222211 0
Q ss_pred HHHHHHHHHhhcCCCccccchhhHHHHHHhhCCCeEEEEEeCCCCH--HHHHHhhcCcCC-----------CCCCcEEEE
Q 045458 101 LQKQLLSNLLKLGDISIWHVEDGINIIGSRLRQKKVLLIIDDVADV--EQLQSLAGKRDW-----------FGPGSRILI 167 (1170)
Q Consensus 101 l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L~~k~~LlVLDdv~~~--~~l~~l~~~~~~-----------~~~gsrIIi 167 (1170)
.......+++ ...-+|+||+++.. +....+...+.. .....+||+
T Consensus 568 -------------------~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ 625 (758)
T 3pxi_A 568 -------------------GGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIM 625 (758)
T ss_dssp ----------------------CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEE
T ss_pred -------------------cchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEE
Confidence 0001111111 23348899999754 222222221110 124568999
Q ss_pred EeCCch-------------hhhh--hCCCCccEEECCCCChHHHHHHHHHhh
Q 045458 168 TTRDKQ-------------LLVA--HEVDEEHILNLDVLNNDEALQLFSMKA 204 (1170)
Q Consensus 168 TTR~~~-------------v~~~--~~~~~~~~~~l~~L~~~ea~~Lf~~~a 204 (1170)
||.... +... ...+ .++.+.+++.++..+++...+
T Consensus 626 ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~--~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 626 TSNVGASEKDKVMGELKRAFRPEFINRID--EIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp EESSSTTCCHHHHHHHHHHSCHHHHTTSS--EEEECC--CHHHHHHHHHHHH
T ss_pred eCCCChhhHHHHHHHHHhhCCHHHHhhCC--eEEecCCCCHHHHHHHHHHHH
Confidence 997311 0000 1122 388999999988888876544
No 240
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.66 E-value=0.0029 Score=70.99 Aligned_cols=47 Identities=26% Similarity=0.286 Sum_probs=38.9
Q ss_pred cCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 27 IKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 27 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
.+.++|++..++.+...+..+ .-+.++|.+|+|||+||+.+++....
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred ccceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 457999999999888777653 35789999999999999999987644
No 241
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.53 E-value=0.0098 Score=67.93 Aligned_cols=49 Identities=18% Similarity=0.177 Sum_probs=36.7
Q ss_pred CccccchhhHHHHHHHHc----------------------------CCCCCeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 28 KELVGIESRLEKIRFLMG----------------------------TGSSDVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 28 ~~~vGr~~~~~~l~~~L~----------------------------~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
+.++|.+..++.|...+. ........+.++|++|+|||++|+.+++...
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899888888876661 0011234688999999999999999998763
No 242
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.51 E-value=0.0058 Score=63.83 Aligned_cols=35 Identities=29% Similarity=0.264 Sum_probs=26.4
Q ss_pred HHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHh
Q 045458 39 KIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYD 73 (1170)
Q Consensus 39 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~ 73 (1170)
.|..++..+-..-.+++|.|.+|+||||||+.++.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 44555542223346899999999999999999987
No 243
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.45 E-value=0.002 Score=69.15 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=8.2
Q ss_pred cCCCCCEEeccCCCC
Q 045458 584 LLSKLVSLDLNNCKN 598 (1170)
Q Consensus 584 ~l~~L~~L~L~~~~~ 598 (1170)
.+++|+.|+|++|..
T Consensus 168 ~l~~L~~L~Ls~N~l 182 (267)
T 3rw6_A 168 NIPELLSLNLSNNRL 182 (267)
T ss_dssp HCTTCCEEECTTSCC
T ss_pred hCCCCCEEECCCCCC
Confidence 455556666655543
No 244
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.35 E-value=0.0082 Score=75.59 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=37.1
Q ss_pred CccccchhhHHHHHHHHcCCC-------CCeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 28 KELVGIESRLEKIRFLMGTGS-------SDVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 28 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
..++|.+..++.+...+.... .....+.++|++|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 458899988888877654311 123478999999999999999999876
No 245
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.13 E-value=0.0056 Score=61.71 Aligned_cols=117 Identities=14% Similarity=0.038 Sum_probs=58.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhh-cCCCc---------cccch
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLK-LGDIS---------IWHVE 121 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~-~~~~~---------~~~~~ 121 (1170)
..|.|++-.|.||||+|-.++-+...+--.+.++.-+... ...+- ..+.+.+.-++.. ..... .....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~~~gE-~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-WPNGE-RNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-SCCHH-HHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-CCccH-HHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 4666777777999999999887755443334444322211 11111 2222222000000 00000 00112
Q ss_pred hhHHHHHHhhCCC-eEEEEEeCCCC--------HHHHHHhhcCcCCCCCCcEEEEEeCCch
Q 045458 122 DGINIIGSRLRQK-KVLLIIDDVAD--------VEQLQSLAGKRDWFGPGSRILITTRDKQ 173 (1170)
Q Consensus 122 ~~~~~i~~~L~~k-~~LlVLDdv~~--------~~~l~~l~~~~~~~~~gsrIIiTTR~~~ 173 (1170)
...+.+++.+.+. -=|||||++.. .+++-.+... ......||||+|...
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~---Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA---RPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT---SCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh---CcCCCEEEEECCCCc
Confidence 3344555666544 45999999832 2333333322 246788999999975
No 246
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.09 E-value=0.014 Score=64.28 Aligned_cols=61 Identities=15% Similarity=0.177 Sum_probs=39.2
Q ss_pred ccCccccch----hhHHHHHHHHcCCCC-CeEEEEEEeCCCccHHHHHHHHHhhhc-cccCceeEEE
Q 045458 26 TIKELVGIE----SRLEKIRFLMGTGSS-DVRMIGIWGMGGLGKTTLARVVYDSMS-YEFDGSSFLA 86 (1170)
Q Consensus 26 ~~~~~vGr~----~~~~~l~~~L~~~~~-~~~vi~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~ 86 (1170)
..++|++.+ ..++.+.+++..... ..+.+.|+|.+|+|||+||+++++... .+-..+.++.
T Consensus 122 tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 122 HLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 446677643 233344555553222 246788999999999999999999776 4433344443
No 247
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.98 E-value=0.033 Score=61.65 Aligned_cols=55 Identities=20% Similarity=0.188 Sum_probs=37.0
Q ss_pred ccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 31 VGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 31 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
.|...-...|..++ .+-..-.++.|.|.+|+||||+|..++..+..+-..++|+.
T Consensus 49 ~~i~TG~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 49 TGVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp CSBCCSCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCccCChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 34444455566666 23234478999999999999999999876544334455654
No 248
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.93 E-value=0.042 Score=54.62 Aligned_cols=22 Identities=36% Similarity=0.619 Sum_probs=19.7
Q ss_pred EEEEEEeCCCccHHHHHHHHHhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDS 74 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~ 74 (1170)
.+|+|.|++|+||||+|+.+ .+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 47899999999999999999 44
No 249
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.89 E-value=0.0083 Score=65.34 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=21.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDS 74 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~ 74 (1170)
.+++.|+|++|+||||||.+++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 367889999999999999999876
No 250
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.83 E-value=0.024 Score=63.34 Aligned_cols=79 Identities=20% Similarity=0.189 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhhcc----cCCCc--cCc-cccchhhHHHHHHHHc-CCCCCeEEEEEEeCCCccHHHHHHHHHhhhcccc
Q 045458 8 FIEEIVNVISSKIH----TEPET--IKE-LVGIESRLEKIRFLMG-TGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEF 79 (1170)
Q Consensus 8 ~i~~i~~~i~~~l~----~~~~~--~~~-~vGr~~~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f 79 (1170)
-++..+.+|-++.. .+... ... .-....-...|..+|. .+-..-+++.|+|.+|+||||||..++......-
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~g 89 (356)
T 3hr8_A 10 VLEKALKRIEENFGKGSIMILGDETQVQPVEVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMG 89 (356)
T ss_dssp HHHHHHHHHHHHHCTTSSCCTTCCSCCCCCCEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCceechhccccCCCceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 46666777766664 11111 111 3334455677888886 3334458999999999999999999998765443
Q ss_pred CceeEEE
Q 045458 80 DGSSFLA 86 (1170)
Q Consensus 80 ~~~~~~~ 86 (1170)
..++|+.
T Consensus 90 g~VlyId 96 (356)
T 3hr8_A 90 GVAAFID 96 (356)
T ss_dssp CCEEEEE
T ss_pred CeEEEEe
Confidence 3455664
No 251
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.69 E-value=0.085 Score=52.80 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=21.2
Q ss_pred EEEEEeCCCccHHHHHHHHHhhhc
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
.++|+|..|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987653
No 252
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.62 E-value=0.029 Score=58.26 Aligned_cols=112 Identities=15% Similarity=0.007 Sum_probs=60.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhhc-CCCccccchhhHHHHHH
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKL-GDISIWHVEDGINIIGS 129 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~-~~~~~~~~~~~~~~i~~ 129 (1170)
-.++.|+|..|.||||+|..++.+...+-..+.++.-..+.. +. .++.++++.. .........+..+.+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r---~~-----~~i~srlG~~~~~~~~~~~~~i~~~i~~ 83 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR---SI-----RNIQSRTGTSLPSVEVESAPEILNYIMS 83 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG---GC-----SSCCCCCCCSSCCEEESSTHHHHHHHHS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch---HH-----HHHHHhcCCCccccccCCHHHHHHHHHH
Confidence 378999999999999999999988765533344443111111 10 0111111100 01111222334444554
Q ss_pred hhCCC-eEEEEEeCCCC--HHHHHHhhcCcCCCCCCcEEEEEeCCch
Q 045458 130 RLRQK-KVLLIIDDVAD--VEQLQSLAGKRDWFGPGSRILITTRDKQ 173 (1170)
Q Consensus 130 ~L~~k-~~LlVLDdv~~--~~~l~~l~~~~~~~~~gsrIIiTTR~~~ 173 (1170)
.+.+. .-+||+|.+.. .++++.+....+ .|..||+|-++..
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~---~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVANILAE---NGFVVIISGLDKN 127 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEECCSBC
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHHHHHHh---CCCeEEEEecccc
Confidence 44444 45999999853 345444432111 3688999999654
No 253
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.42 E-value=0.04 Score=61.09 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=37.5
Q ss_pred cccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 30 LVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 30 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
..|...-...|.+++. +-..-.++.|.|.+|+||||+|..++..+..+-..+.|+.
T Consensus 26 ~~gi~TG~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 26 VTGIPTGFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp CCSBCCSCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cCcccCCChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4455555566666664 3233468999999999999999999887654323344544
No 254
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.36 E-value=0.022 Score=59.72 Aligned_cols=38 Identities=26% Similarity=0.384 Sum_probs=27.8
Q ss_pred HHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 38 EKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 38 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
..|..++..+-..-.+++|.|..|+|||||++.++...
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34445554332344799999999999999999998643
No 255
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.35 E-value=0.055 Score=60.69 Aligned_cols=110 Identities=15% Similarity=0.146 Sum_probs=65.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccccCcee-EEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYEFDGSS-FLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSR 130 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~-~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~ 130 (1170)
.+|+|.|+.|.||||+.+.+...+.......+ .+.+..+....... . . +. .... ........+.+.+.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~--~----~---v~-q~~~-~~~~~~~~~~La~a 192 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKK--C----L---VN-QREV-HRDTLGFSEALRSA 192 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS--S----E---EE-EEEB-TTTBSCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccc--c----c---ee-eeee-ccccCCHHHHHHHH
Confidence 59999999999999999999876654322222 22221111100000 0 0 00 0000 00112344578899
Q ss_pred hCCCeEEEEEeCCCCHHHHHHhhcCcCCCCCCcEEEEEeCCchhh
Q 045458 131 LRQKKVLLIIDDVADVEQLQSLAGKRDWFGPGSRILITTRDKQLL 175 (1170)
Q Consensus 131 L~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v~ 175 (1170)
|+..+=+|++|...+.+.++.+.... ..|..||+||.+....
T Consensus 193 L~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 193 LREDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp TTSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred hhhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 99999999999999877766544332 2466799999876643
No 256
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.27 E-value=0.025 Score=69.93 Aligned_cols=150 Identities=15% Similarity=0.293 Sum_probs=77.3
Q ss_pred CccccchhhHHHHHHHHcCC-----------CCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCC
Q 045458 28 KELVGIESRLEKIRFLMGTG-----------SSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEG 96 (1170)
Q Consensus 28 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 96 (1170)
+...|.+...++|.+.+... ....+-|.++|++|.|||.+|++++.+.... |+. +...
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-----f~~-v~~~----- 545 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-----FIS-IKGP----- 545 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-----EEE-CCHH-----
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-----eEE-eccc-----
Confidence 45778888888887665321 1224567899999999999999999876432 332 1110
Q ss_pred cHHHHHHHHHHHHhhcCCCccccchhhH-HHHHHhhCCCeEEEEEeCCCCHH----------------HHHHhhcCcCCC
Q 045458 97 SVISLQKQLLSNLLKLGDISIWHVEDGI-NIIGSRLRQKKVLLIIDDVADVE----------------QLQSLAGKRDWF 159 (1170)
Q Consensus 97 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~-~~i~~~L~~k~~LlVLDdv~~~~----------------~l~~l~~~~~~~ 159 (1170)
+++.... ...+..+ +.+...-+..+.+|++|++|..- .+..++...+..
T Consensus 546 -------~l~s~~v-------Gese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~ 611 (806)
T 3cf2_A 546 -------ELLTMWF-------GESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 611 (806)
T ss_dssp -------HHHTTTC-------SSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSS
T ss_pred -------hhhcccc-------chHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCC
Confidence 0111100 0111112 22222334578999999986320 123333322222
Q ss_pred C--CCcEEEEEeCCchhhh-h----hCCCCccEEECCCCChHHHHHHHHHhh
Q 045458 160 G--PGSRILITTRDKQLLV-A----HEVDEEHILNLDVLNNDEALQLFSMKA 204 (1170)
Q Consensus 160 ~--~gsrIIiTTR~~~v~~-~----~~~~~~~~~~l~~L~~~ea~~Lf~~~a 204 (1170)
. .+.-||-||....... + -..+. .+.++.-+.++..++|..+.
T Consensus 612 ~~~~~V~vi~aTN~p~~lD~AllRpgRfd~--~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 612 STKKNVFIIGATNRPDIIDPAILRPGRLDQ--LIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp CSSSSEEEECC-CCSSSSCHHHHSTTTSCC--EEEC-----CHHHHTTTTTS
T ss_pred CCCCCEEEEEeCCCchhCCHhHcCCCcceE--EEEECCcCHHHHHHHHHHHh
Confidence 2 2333444554433221 1 12344 78888888888888887665
No 257
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.26 E-value=0.04 Score=61.99 Aligned_cols=57 Identities=21% Similarity=0.267 Sum_probs=40.0
Q ss_pred cccchhhHHHHHHHHc-CCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 30 LVGIESRLEKIRFLMG-TGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 30 ~vGr~~~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
.-+...-...|..+|. .+-..-+++.|+|.+|+||||||..++......-..++|+.
T Consensus 52 ~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 52 VQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 3444555667777776 23233468899999999999999999876654434566665
No 258
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.24 E-value=0.036 Score=58.21 Aligned_cols=49 Identities=18% Similarity=0.149 Sum_probs=31.0
Q ss_pred HHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 38 EKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 38 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
..|..++..+-..-.+++|.|.+|+|||||++.++......-..+.|+.
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3444444322122368999999999999999999865543322344443
No 259
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.17 E-value=0.095 Score=57.37 Aligned_cols=45 Identities=27% Similarity=0.209 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHcCCC------CCeEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 34 ESRLEKIRFLMGTGS------SDVRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 34 ~~~~~~l~~~L~~~~------~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
..-.++|.+.+.... ....+|+|+|.+|+||||++..++..+..+
T Consensus 81 ~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 81 ESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp HHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 344556666665421 345799999999999999999999876544
No 260
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.12 E-value=0.033 Score=57.20 Aligned_cols=88 Identities=20% Similarity=0.232 Sum_probs=47.6
Q ss_pred EEEEEeCCCccHHHHHHHHHhhhccccCceeEEEe---cchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHH
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLAD---VREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGS 129 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~---~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~ 129 (1170)
+|.|.|++|+||||.|+.+++++. ...++. +|+....... +-.++-..+..+ . ..+.+-....+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g-----~~~istGdllR~~i~~~t~---lg~~~~~~~~~G-~--lvpd~iv~~lv~~ 70 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG-----FVHISTGDILREAVQKGTP---LGKKAKEYMERG-E--LVPDDLIIALIEE 70 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-----CEEEEHHHHHHHHHHHTCH---HHHHHHHHHHHT-C--CCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-----CeEEcHHHHHHHHHHhcCh---hhhhHHHHHhcC-C--cCCHHHHHHHHHH
Confidence 577899999999999999988652 222320 1111111111 111111111111 1 1122334567788
Q ss_pred hhCCCeEEEEEeCC-CCHHHHHHh
Q 045458 130 RLRQKKVLLIIDDV-ADVEQLQSL 152 (1170)
Q Consensus 130 ~L~~k~~LlVLDdv-~~~~~l~~l 152 (1170)
++....- +|||+. .+..|.+.+
T Consensus 71 ~l~~~~~-~ilDGfPRt~~Qa~~l 93 (206)
T 3sr0_A 71 VFPKHGN-VIFDGFPRTVKQAEAL 93 (206)
T ss_dssp HCCSSSC-EEEESCCCSHHHHHHH
T ss_pred hhccCCc-eEecCCchhHHHHHHH
Confidence 8876554 689998 566666555
No 261
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.09 E-value=0.1 Score=57.70 Aligned_cols=28 Identities=25% Similarity=0.250 Sum_probs=24.3
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
...+++|+|..|+||||+++.++..++.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999999876544
No 262
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.09 E-value=0.042 Score=61.55 Aligned_cols=79 Identities=19% Similarity=0.181 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhhcc----cCCCc--cCccccchhhHHHHHHHHc-CCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccC
Q 045458 8 FIEEIVNVISSKIH----TEPET--IKELVGIESRLEKIRFLMG-TGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFD 80 (1170)
Q Consensus 8 ~i~~i~~~i~~~l~----~~~~~--~~~~vGr~~~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~ 80 (1170)
-++.....|.++.. ..... ....-+...-...|..+|. .+-..-+++.|+|.+|+||||||..++......-.
T Consensus 11 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~ 90 (349)
T 2zr9_A 11 ALELAMAQIDKNFGKGSVMRLGEEVRQPISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGG 90 (349)
T ss_dssp HHHHHHHHHHHHHCTTSSCCTTCCCCCCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhCCCCceeccccccccCCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCC
Confidence 45556666655543 11111 1223344455567777776 33334578999999999999999999876654434
Q ss_pred ceeEEE
Q 045458 81 GSSFLA 86 (1170)
Q Consensus 81 ~~~~~~ 86 (1170)
.++|+.
T Consensus 91 ~vlyi~ 96 (349)
T 2zr9_A 91 IAAFID 96 (349)
T ss_dssp CEEEEE
T ss_pred eEEEEE
Confidence 456665
No 263
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.03 E-value=0.096 Score=60.99 Aligned_cols=54 Identities=15% Similarity=0.190 Sum_probs=35.2
Q ss_pred cchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhcccc-CceeEEE
Q 045458 32 GIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEF-DGSSFLA 86 (1170)
Q Consensus 32 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~ 86 (1170)
|...-...|..++ .+-..-.++.|.|.+|+||||+|..++..+.... ..++|+.
T Consensus 182 ~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s 236 (444)
T 2q6t_A 182 GVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS 236 (444)
T ss_dssp -CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred cccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3334444555555 2333446899999999999999999988765432 2355554
No 264
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.01 E-value=0.18 Score=56.57 Aligned_cols=157 Identities=8% Similarity=-0.019 Sum_probs=93.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhcc-ccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHH
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMSY-EFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIG 128 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~ 128 (1170)
-.++..++|..|.||++.|+.+...+.. .|+....+. +. ....+..+.+....
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~--------------------- 70 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-ID----PNTDWNAIFSLCQA--------------------- 70 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-CC----TTCCHHHHHHHHHH---------------------
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-ec----CCCCHHHHHHHhcC---------------------
Confidence 4578999999999999999999886542 343211111 11 11222222222110
Q ss_pred HhhCCCeEEEEEeCCCC---HHHHHHhhcCcCCCCCCcEEEEEeCC-------chhhhhhCCCCccEEECCCCChHHHHH
Q 045458 129 SRLRQKKVLLIIDDVAD---VEQLQSLAGKRDWFGPGSRILITTRD-------KQLLVAHEVDEEHILNLDVLNNDEALQ 198 (1170)
Q Consensus 129 ~~L~~k~~LlVLDdv~~---~~~l~~l~~~~~~~~~gsrIIiTTR~-------~~v~~~~~~~~~~~~~l~~L~~~ea~~ 198 (1170)
.-+-+++-++|+|+++. .+..+.+........+++.+|++|.. ..+..... .....++..+++.++..+
T Consensus 71 ~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~-sr~~~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 71 MSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALA-NRSVQVTCQTPEQAQLPR 149 (343)
T ss_dssp HHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHT-TTCEEEEECCCCTTHHHH
T ss_pred cCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHH-hCceEEEeeCCCHHHHHH
Confidence 11234566788999865 24455555444434568888877743 12333322 223489999999999998
Q ss_pred HHHHhhcCCCCCChhhHHHHHHHHHHhCCCchHHHHH
Q 045458 199 LFSMKAFKTHQPVGEYVELSERVLEYAGGLPLALKVL 235 (1170)
Q Consensus 199 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 235 (1170)
++...+-... .....+.+..+++.++|.+.++...
T Consensus 150 ~l~~~~~~~g--~~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 150 WVAARAKQLN--LELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHHHHHHTT--CEECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHHHHHcC--CCCCHHHHHHHHHHhchHHHHHHHH
Confidence 8887763322 1233466788889999988877653
No 265
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.99 E-value=0.045 Score=59.28 Aligned_cols=48 Identities=10% Similarity=0.123 Sum_probs=33.2
Q ss_pred HHHHHHHc----CCCCCeEEEEEEeCCCccHHHHHHHHHhhhcccc--CceeEEE
Q 045458 38 EKIRFLMG----TGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEF--DGSSFLA 86 (1170)
Q Consensus 38 ~~l~~~L~----~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~ 86 (1170)
.+|..+|. .+-.. .++.|+|.+|+||||||.+++.....++ ..++|+.
T Consensus 12 ~~LD~~LGg~~~GGl~~-GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 12 PMMNIALSGEITGGMQS-GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp HHHHHHHHSSTTCCBCS-EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred HHHHHHhCCCCCCCCcC-CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 45566676 32222 3789999999999999999887765442 3456655
No 266
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.95 E-value=0.039 Score=57.02 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=24.4
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 49 SDVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 49 ~~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
...++|.|.|++|+||||.|+.+++++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467999999999999999999998865
No 267
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.93 E-value=0.043 Score=61.55 Aligned_cols=57 Identities=25% Similarity=0.309 Sum_probs=40.4
Q ss_pred cccchhhHHHHHHHHc-CCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 30 LVGIESRLEKIRFLMG-TGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 30 ~vGr~~~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
.-+...-...|..+|. .+-..-+++.|+|.+|+||||||..++......-..++|+.
T Consensus 41 ~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 41 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3445555667777776 33234478999999999999999999877654434566665
No 268
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.87 E-value=0.08 Score=61.40 Aligned_cols=54 Identities=20% Similarity=0.178 Sum_probs=35.6
Q ss_pred cchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 32 GIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 32 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
|...-...|.+++. +-..-.++.|.|.+|+||||+|..++..+..+-..++|+.
T Consensus 179 gi~TG~~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 179 GVPSGFTELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp SBCCSCHHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CcCCCcHHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 34444445555553 3234468999999999999999999887654423344543
No 269
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.73 E-value=0.023 Score=64.45 Aligned_cols=48 Identities=21% Similarity=0.158 Sum_probs=37.5
Q ss_pred ccccchhhHHHHHHHHc-------------CCCCCeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 29 ELVGIESRLEKIRFLMG-------------TGSSDVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 29 ~~vGr~~~~~~l~~~L~-------------~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
.++|.+..++.+...+. ......+.|.++|++|+|||++|+++++...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 47999999998887772 1111335688999999999999999998763
No 270
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.73 E-value=0.064 Score=56.67 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=27.9
Q ss_pred HHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhh
Q 045458 38 EKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDS 74 (1170)
Q Consensus 38 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~ 74 (1170)
..|..++..+-..-.+++|.|.+|+||||||+.++..
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4455666433233468999999999999999999875
No 271
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.69 E-value=0.068 Score=57.20 Aligned_cols=109 Identities=13% Similarity=0.166 Sum_probs=61.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecc--hhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHH
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVR--EKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIG 128 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~--~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~ 128 (1170)
-.+++|+|+.|.|||||++.+...+...+.+.+++.... ........ +........ +.......+.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~-----------~v~q~~~gl-~~~~l~~~la 92 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKS-----------IVNQREVGE-DTKSFADALR 92 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSS-----------EEEEEEBTT-TBSCHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcce-----------eeeHHHhCC-CHHHHHHHHH
Confidence 378999999999999999999876544334444443210 00000000 000000000 0122345667
Q ss_pred HhhCCCeEEEEEeCCCCHHHHHHhhcCcCCCCCCcEEEEEeCCchh
Q 045458 129 SRLRQKKVLLIIDDVADVEQLQSLAGKRDWFGPGSRILITTRDKQL 174 (1170)
Q Consensus 129 ~~L~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~v 174 (1170)
+.|..++=++++|...+.+....+.... ..|..|++||.+...
T Consensus 93 ~aL~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 93 AALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHHHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred HHHhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 7777777789999997666544433221 346778888887653
No 272
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.66 E-value=0.028 Score=58.03 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=29.3
Q ss_pred HHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 37 LEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 37 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
+++|.+.+....+...+|+|.|..|.|||||++.+...+.
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3444444432224558999999999999999999988665
No 273
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.64 E-value=0.074 Score=67.58 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=37.4
Q ss_pred ccccchhhHHHHHHHHcCCC-------CCeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 29 ELVGIESRLEKIRFLMGTGS-------SDVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 29 ~~vGr~~~~~~l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
.++|.+..++.+...+.... .....+.|+|.+|+|||++|+.+++...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 57999998888877664321 1235789999999999999999998764
No 274
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.64 E-value=0.016 Score=58.18 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=22.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
.+|.|.|++|+||||+|+.+.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998764
No 275
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.55 E-value=0.15 Score=58.33 Aligned_cols=29 Identities=28% Similarity=0.132 Sum_probs=25.0
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
..++|+++|.+|+||||++..++..++.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 36899999999999999999998766544
No 276
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.55 E-value=0.052 Score=55.68 Aligned_cols=44 Identities=23% Similarity=0.336 Sum_probs=33.1
Q ss_pred chhhHHHHHHHHcC-CCCCeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 33 IESRLEKIRFLMGT-GSSDVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 33 r~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
|++.+++|.+.+.. ......+|+|.|..|.||||+++.+...+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45566666665543 224468999999999999999999987654
No 277
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.55 E-value=0.1 Score=59.81 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=24.8
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
...+|.++|.+|+||||++..++..++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999998766544
No 278
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.52 E-value=0.14 Score=59.70 Aligned_cols=49 Identities=12% Similarity=0.211 Sum_probs=32.5
Q ss_pred HHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccC-ceeEEE
Q 045458 37 LEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFD-GSSFLA 86 (1170)
Q Consensus 37 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~~~~ 86 (1170)
...|..++. +-..-.++.|.|.+|+||||+|..++..+..... .+.|+.
T Consensus 190 ~~~LD~~~g-Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 190 FTELDRMTS-GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp CHHHHHHHS-SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred cHHHHhhcC-CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 344444442 2233468999999999999999999987654322 355554
No 279
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.49 E-value=0.056 Score=53.79 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=19.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHH
Q 045458 51 VRMIGIWGMGGLGKTTLARVVY 72 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~ 72 (1170)
-.+++|.|..|.|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 3689999999999999999644
No 280
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.48 E-value=0.098 Score=60.12 Aligned_cols=32 Identities=34% Similarity=0.590 Sum_probs=25.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccccCcee
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYEFDGSS 83 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~ 83 (1170)
+.++|+|.+|+||||||+.+......++...+
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~ 183 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS 183 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence 35889999999999999999887665544333
No 281
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.31 E-value=0.18 Score=56.47 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=29.7
Q ss_pred HHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 37 LEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 37 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
...|..+|..+-..-.++.|+|.+|+||||||..++...
T Consensus 108 ~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 108 SQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp CHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred ChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345566665333455899999999999999999998764
No 282
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.29 E-value=0.022 Score=56.71 Aligned_cols=25 Identities=20% Similarity=0.120 Sum_probs=22.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
.+|+|.|+.|+||||+|+.+.+++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999988764
No 283
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.29 E-value=0.18 Score=55.00 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=24.2
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
..++|+|+|.+|+||||++..++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999887653
No 284
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.29 E-value=0.035 Score=65.24 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=37.8
Q ss_pred CccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 28 KELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 28 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
+.+||++..++.+...+..+ .-|.|+|++|+|||+||+.+++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHHh
Confidence 47999999998888777653 3578999999999999999998663
No 285
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.26 E-value=0.0076 Score=75.71 Aligned_cols=52 Identities=19% Similarity=0.288 Sum_probs=39.2
Q ss_pred cCccccchhhHHHHHHHHcCC-----------CCCeEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 27 IKELVGIESRLEKIRFLMGTG-----------SSDVRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 27 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
-++++|.+...++|.+.+... -...+.+.++|++|+||||||++++......
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCC
Confidence 356788888888888766421 1223568899999999999999999877543
No 286
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.11 E-value=0.081 Score=57.76 Aligned_cols=43 Identities=23% Similarity=0.231 Sum_probs=31.0
Q ss_pred hHHHHHHHHcCCCCC-------eEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 36 RLEKIRFLMGTGSSD-------VRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 36 ~~~~l~~~L~~~~~~-------~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
..++|...+.....+ .++|++.|.+|+||||++..++..+..+
T Consensus 76 ~~~~l~~~~~~~~~~~i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~ 125 (297)
T 1j8m_F 76 VYDELSNLFGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKK 125 (297)
T ss_dssp HHHHHHHHTTCSCCCCCSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 344555566432222 5799999999999999999998876544
No 287
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.03 E-value=0.15 Score=58.73 Aligned_cols=43 Identities=19% Similarity=0.179 Sum_probs=32.6
Q ss_pred hHHHHHHHHcCCC-------CCeEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 36 RLEKIRFLMGTGS-------SDVRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 36 ~~~~l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
-.++|.+++.... ...++|+++|.+|+||||+|..++..+..+
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4456667775421 346899999999999999999999877654
No 288
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.01 E-value=0.099 Score=57.70 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=27.8
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
..++|+|+|.+|+||||++..++..+... ...+.+.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~-g~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL-GYKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEE
Confidence 46899999999999999999998876544 3344443
No 289
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.91 E-value=0.057 Score=58.74 Aligned_cols=30 Identities=20% Similarity=0.182 Sum_probs=25.6
Q ss_pred CCCeEEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 48 SSDVRMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 48 ~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
.+...+|+|.|..|+||||||+.+...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 355789999999999999999999876653
No 290
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.89 E-value=0.029 Score=56.66 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=22.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
+.|+|.|+.|+||||+|+.++++..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999998763
No 291
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.86 E-value=0.03 Score=57.33 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=23.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
..+|+|.|+.|+||||+|+.++..+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36899999999999999999998763
No 292
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.85 E-value=0.12 Score=57.23 Aligned_cols=38 Identities=24% Similarity=0.303 Sum_probs=28.3
Q ss_pred HHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 38 EKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 38 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
..|..+|..+-..-.++.|+|.+|+||||+|..++...
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 45555654322334689999999999999999998764
No 293
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.73 E-value=0.024 Score=57.06 Aligned_cols=28 Identities=36% Similarity=0.508 Sum_probs=23.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhcccc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYEF 79 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~f 79 (1170)
|.|+|.|++|+|||||++.+..+....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 5688999999999999999988765444
No 294
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.71 E-value=0.037 Score=62.30 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=37.4
Q ss_pred cCCCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 22 TEPETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 22 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
.++...+.++|.+...+.+...+... ...-|.|+|.+|+|||++|+.+++...
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~~--~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCCCchhccChHHHHHHHHHHhhCC--CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 34445577999988666554433221 122388999999999999999998654
No 295
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.71 E-value=0.17 Score=57.12 Aligned_cols=109 Identities=16% Similarity=0.185 Sum_probs=61.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhccccCceeE-EEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHH
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSF-LADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGS 129 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~-~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~ 129 (1170)
-.+|+|+|..|.||||+++.+...+.....+.+. +.+..+....... . +..+ ..-+. +.......+++
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~--~----~v~Q--~~~g~---~~~~~~~~l~~ 204 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKK--S----IVNQ--REVGE---DTKSFADALRA 204 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSS--S----EEEE--EEBTT---TBSCSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCc--e----EEEe--eecCC---CHHHHHHHHHH
Confidence 4789999999999999999998866543233443 2211110000000 0 0000 00000 11233457788
Q ss_pred hhCCCeEEEEEeCCCCHHHHHHhhcCcCCCCCCcEEEEEeCCch
Q 045458 130 RLRQKKVLLIIDDVADVEQLQSLAGKRDWFGPGSRILITTRDKQ 173 (1170)
Q Consensus 130 ~L~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~ 173 (1170)
.++..+=+|++|.+.+.+.+....... ..|..|+.|+....
T Consensus 205 ~L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 205 ALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp HTTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred HhhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 888888899999998776655433321 34666777777654
No 296
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.66 E-value=0.068 Score=59.40 Aligned_cols=27 Identities=26% Similarity=0.207 Sum_probs=23.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
..++|+|.+|+|||||++.+.+.+...
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~~~ 201 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIAYN 201 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHHhhc
Confidence 578999999999999999998866543
No 297
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.55 E-value=0.097 Score=58.16 Aligned_cols=103 Identities=17% Similarity=0.131 Sum_probs=60.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccc--cchhhHHHHHH
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIW--HVEDGINIIGS 129 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~--~~~~~~~~i~~ 129 (1170)
.+++|+|..|.|||||++.+...+... .+.+.+....+.... .. ....... ........+.+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~-~g~i~i~~~~e~~~~-~~--------------~~~i~~~~ggg~~~r~~la~ 235 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKE-ERIISIEDTEEIVFK-HH--------------KNYTQLFFGGNITSADCLKS 235 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTT-SCEEEEESSCCCCCS-SC--------------SSEEEEECBTTBCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCC-CcEEEECCeeccccc-cc--------------hhEEEEEeCCChhHHHHHHH
Confidence 579999999999999999998765432 455665543221100 00 0000000 12344556778
Q ss_pred hhCCCeEEEEEeCCCCHHHHHHhhcCcCCCCCCcEEEEEeCCch
Q 045458 130 RLRQKKVLLIIDDVADVEQLQSLAGKRDWFGPGSRILITTRDKQ 173 (1170)
Q Consensus 130 ~L~~k~~LlVLDdv~~~~~l~~l~~~~~~~~~gsrIIiTTR~~~ 173 (1170)
.|..++=++++|.+...+.++.+... . ..+..+|+||....
T Consensus 236 aL~~~p~ilildE~~~~e~~~~l~~~-~--~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 236 CLRMRPDRIILGELRSSEAYDFYNVL-C--SGHKGTLTTLHAGS 276 (330)
T ss_dssp HTTSCCSEEEECCCCSTHHHHHHHHH-H--TTCCCEEEEEECSS
T ss_pred HhhhCCCEEEEcCCChHHHHHHHHHH-h--cCCCEEEEEEcccH
Confidence 88888889999999876555544322 1 11223666665544
No 298
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.53 E-value=0.17 Score=56.17 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=29.3
Q ss_pred HHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 37 LEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 37 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
...|..+|..+-..-.++.|+|.+|+||||+|..++...
T Consensus 84 ~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 84 SSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp CHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred ChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 455666665332345799999999999999999988653
No 299
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.47 E-value=0.059 Score=59.61 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=33.7
Q ss_pred ccchhhHHHHHHHHcC--CCCCeEEEEEEeCCCccHHHHHHHHHhhhcccc
Q 045458 31 VGIESRLEKIRFLMGT--GSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEF 79 (1170)
Q Consensus 31 vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f 79 (1170)
|+.+...+++.+.+.. ..+....|+|+|++|+||||+|+.++..+...|
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 3444445555544431 234567799999999999999999998765544
No 300
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.40 E-value=0.067 Score=54.15 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=23.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
.+|+|.|++|+||||+|+.+.+++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999987753
No 301
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.38 E-value=0.055 Score=54.89 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=22.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
..+|.|.|++|+||||+|+.+.+.+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4789999999999999999998865
No 302
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.32 E-value=0.041 Score=54.49 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
..+|+|.|+.|+||||+|+.+.+++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988654
No 303
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.28 E-value=0.045 Score=54.78 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=20.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYD 73 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~ 73 (1170)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 304
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.27 E-value=0.058 Score=57.17 Aligned_cols=41 Identities=20% Similarity=0.061 Sum_probs=28.8
Q ss_pred hhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 35 SRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 35 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
..+.++.+...........|+|.|++|+||||+|+.+.+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 13 DLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444443333222345789999999999999999998765
No 305
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.18 E-value=0.076 Score=54.33 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=24.1
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
...+|+|.|+.|.||||+|+.+...+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 347999999999999999999998775
No 306
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.15 E-value=0.043 Score=55.17 Aligned_cols=25 Identities=12% Similarity=0.380 Sum_probs=22.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
++++|+|+.|+|||||++.+.....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 6899999999999999999987654
No 307
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.14 E-value=0.036 Score=55.63 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=22.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
.++|+|.|++|+||||+|+.+.+.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3678999999999999999998765
No 308
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=93.12 E-value=1.6 Score=49.06 Aligned_cols=49 Identities=24% Similarity=0.276 Sum_probs=35.6
Q ss_pred cCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 27 IKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 27 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
...++|....+.++...+..-......|.|+|.+|.||+++|+.+...-
T Consensus 128 ~~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s 176 (368)
T 3dzd_A 128 EIEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYS 176 (368)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhc
Confidence 3568998888877766554322222346799999999999999998654
No 309
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.05 E-value=0.038 Score=54.97 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=22.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
.+|+|+|+.|.||||+|+.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999988653
No 310
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.97 E-value=0.17 Score=53.19 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
.+++|+|..|.|||||++.++.-+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 689999999999999999998643
No 311
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.96 E-value=0.055 Score=54.81 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDS 74 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~ 74 (1170)
..+|+|.|+.|.|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 378999999999999999999875
No 312
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.88 E-value=0.13 Score=56.25 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=24.0
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
...+|+|+|.+|+||||+++.++..+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 3579999999999999999999876544
No 313
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.88 E-value=0.084 Score=53.25 Aligned_cols=28 Identities=29% Similarity=0.335 Sum_probs=24.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
...+|+|.|++|.||||+|+.++..+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3478999999999999999999987654
No 314
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.82 E-value=0.19 Score=54.96 Aligned_cols=28 Identities=29% Similarity=0.270 Sum_probs=24.1
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
...+++|+|..|+||||+++.++..++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999876543
No 315
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.81 E-value=0.053 Score=55.55 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=21.9
Q ss_pred EEEEEeCCCccHHHHHHHHHhhhc
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
.|+|.|+.|+||||+|+.+.+.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998764
No 316
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.78 E-value=0.059 Score=57.48 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=22.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
.+|+|.|++|+||||||+.++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999988653
No 317
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.72 E-value=0.059 Score=54.53 Aligned_cols=26 Identities=23% Similarity=0.497 Sum_probs=23.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
.+|+|.|++|+||||+|+.+.++...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57999999999999999999987653
No 318
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.70 E-value=0.087 Score=51.93 Aligned_cols=29 Identities=24% Similarity=0.194 Sum_probs=24.8
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
..++++|.|..|.|||||+..+...++.+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 35789999999999999999999877554
No 319
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.70 E-value=0.082 Score=53.45 Aligned_cols=42 Identities=10% Similarity=0.119 Sum_probs=30.8
Q ss_pred hhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 35 SRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 35 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
.-+..+..++.. -+....+.|+|++|+||||+|.++++.+..
T Consensus 43 ~f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 43 TFLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 335566666653 233356899999999999999999987653
No 320
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.69 E-value=0.2 Score=47.04 Aligned_cols=56 Identities=21% Similarity=0.264 Sum_probs=40.8
Q ss_pred CEEeccCCCCCCCCCcCccCCCCCCCEEECcCCCCcccchh-hhcCCCCCEeeccCccC
Q 045458 778 TKLDLSDCDLGEGFIPNDIGNLRSLKVLCLSNNSFVSLPAS-ISRLSKLECLNLNGCKK 835 (1170)
Q Consensus 778 ~~L~Ls~c~l~~~~~~~~l~~l~sL~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~~ 835 (1170)
..++.++++++...+|..+ .++|+.|+|++|+|+.+|.. +..+++|+.|+|.+|+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 3677777777522466543 35789999999999988854 57788899998888763
No 321
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.68 E-value=0.23 Score=56.43 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=27.3
Q ss_pred HHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHh
Q 045458 37 LEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYD 73 (1170)
Q Consensus 37 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~ 73 (1170)
...|.++|..+-..-.++.|.|.+|+|||||+..++-
T Consensus 164 ~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 164 SKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHH
Confidence 4456666643323347899999999999999997763
No 322
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.62 E-value=0.082 Score=54.08 Aligned_cols=26 Identities=38% Similarity=0.520 Sum_probs=23.1
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
...+|+|.|+.|.||||+|+.+....
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 34689999999999999999998765
No 323
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.58 E-value=0.06 Score=55.53 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=23.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
.++|+|.|+.|+|||||++.+......
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 468999999999999999999987643
No 324
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.58 E-value=0.057 Score=53.86 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=21.5
Q ss_pred EEEEEeCCCccHHHHHHHHHhhhc
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
.|+|.|++|.||||+|+.++.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999988754
No 325
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.57 E-value=0.053 Score=55.59 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=22.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
..+|+|.|+.|+||||+|+.+...+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998875
No 326
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.56 E-value=0.057 Score=54.55 Aligned_cols=29 Identities=34% Similarity=0.492 Sum_probs=24.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccccC
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYEFD 80 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~f~ 80 (1170)
++++|.|+.|+|||||++.+.......|.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~ 30 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccce
Confidence 57899999999999999999987654443
No 327
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.54 E-value=0.063 Score=54.56 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=22.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
..+|+|.|++|+||||+|+.+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998765
No 328
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.52 E-value=0.076 Score=54.39 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=23.6
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 49 SDVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 49 ~~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
....+|+|.|+.|+||||+|+.+.+..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999998764
No 329
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.51 E-value=0.067 Score=53.92 Aligned_cols=24 Identities=33% Similarity=0.331 Sum_probs=21.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDS 74 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~ 74 (1170)
...|+|+|+.|+||||+|+.+.+.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999886
No 330
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.48 E-value=0.096 Score=52.93 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=20.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYD 73 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~ 73 (1170)
.+++|.|+.|.||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999976
No 331
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.46 E-value=0.089 Score=52.39 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
..+|+|.|+.|.||||+|+.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 332
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.44 E-value=0.19 Score=52.09 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
-.++|.|++|+||||+|+.+.+++
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 357999999999999999998865
No 333
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.44 E-value=0.051 Score=54.73 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=21.9
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
.+|+|.|++|+||||+|+.+..++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999988653
No 334
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.39 E-value=0.11 Score=59.63 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=37.2
Q ss_pred CccccchhhHHHHHHHHcC---------C---CCCeEEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 28 KELVGIESRLEKIRFLMGT---------G---SSDVRMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 28 ~~~vGr~~~~~~l~~~L~~---------~---~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
+.++|.+...+.|...+.. + ....+-|.++|++|+||||+|+.++.....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 4688988888888665521 0 012356889999999999999999987643
No 335
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.34 E-value=0.056 Score=54.31 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=18.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
.+|+|.|++|+||||+|+.+.+.+.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999987654
No 336
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.34 E-value=0.18 Score=56.40 Aligned_cols=38 Identities=26% Similarity=0.384 Sum_probs=29.0
Q ss_pred HHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 38 EKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 38 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
..|..+|..+-..-.++.|+|..|+|||||++.++..+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34555554333445899999999999999999998765
No 337
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.33 E-value=0.1 Score=57.33 Aligned_cols=30 Identities=23% Similarity=0.535 Sum_probs=24.6
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 49 SDVRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 49 ~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
++.++|+|+|-|||||||.|..++.-+...
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~ 75 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL 75 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHC
Confidence 457999999999999999998887765443
No 338
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.32 E-value=0.076 Score=53.84 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=21.9
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
.+|+|.|++|+||||+|+.+.+..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998765
No 339
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.28 E-value=0.078 Score=56.52 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=23.9
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 49 SDVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 49 ~~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
....+|+|.|+.|.||||+|+.+...+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4567899999999999999999988654
No 340
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.25 E-value=0.24 Score=55.38 Aligned_cols=28 Identities=29% Similarity=0.270 Sum_probs=24.2
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
...+|+|+|..|+||||+++.++..+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 3579999999999999999999876543
No 341
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.25 E-value=0.061 Score=55.23 Aligned_cols=27 Identities=26% Similarity=0.440 Sum_probs=23.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
..++|+|.|++|+||||+++.+.....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346899999999999999999988763
No 342
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.19 E-value=0.077 Score=52.39 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=21.5
Q ss_pred EEEEEeCCCccHHHHHHHHHhhhc
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
.|+|.|+.|+||||+|+.+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988653
No 343
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.16 E-value=0.07 Score=54.09 Aligned_cols=27 Identities=11% Similarity=0.364 Sum_probs=23.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
..++|+|.|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 347899999999999999999987654
No 344
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.14 E-value=0.058 Score=53.56 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=22.0
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
.+|+|.|+.|+||||+|+.+.+.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988653
No 345
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.11 E-value=0.12 Score=53.11 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=23.9
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
.+|+|.|++|+||||+|+.+.+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 689999999999999999999876543
No 346
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.11 E-value=0.072 Score=54.28 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=22.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
.+|+|.|++|+||||+|+.+.+++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999988653
No 347
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.08 E-value=0.19 Score=56.51 Aligned_cols=40 Identities=20% Similarity=0.305 Sum_probs=29.8
Q ss_pred HHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 38 EKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 38 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
.++.+.+....+...+|+|+|.+|+|||||+..+...+..
T Consensus 66 ~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 66 QQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3444444433456789999999999999999999876543
No 348
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.07 E-value=0.082 Score=53.22 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.9
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
..|+|.|++|+||||+|+.+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998765
No 349
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.07 E-value=0.091 Score=53.72 Aligned_cols=26 Identities=35% Similarity=0.395 Sum_probs=23.1
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHhh
Q 045458 49 SDVRMIGIWGMGGLGKTTLARVVYDS 74 (1170)
Q Consensus 49 ~~~~vi~I~G~gGiGKTtLA~~~~~~ 74 (1170)
+...+|+|.|+.|.||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34679999999999999999999875
No 350
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.96 E-value=0.097 Score=63.61 Aligned_cols=51 Identities=24% Similarity=0.372 Sum_probs=41.8
Q ss_pred CCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 24 PETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 24 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
|...+.++|.+..++.+...+..+ ..++|+|++|+||||||+.++..+...
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred ccccceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 344467999999999888888754 478999999999999999999876543
No 351
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.96 E-value=0.21 Score=51.89 Aligned_cols=42 Identities=26% Similarity=0.293 Sum_probs=30.4
Q ss_pred hhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 35 SRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 35 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
...+.+...+.. ...+.|+|+|.+|+|||||+..+.......
T Consensus 24 ~~a~~~r~~~~~--~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 24 RLADKNRKLLNK--HGVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp HHHHHHHHHHHH--TTCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHh--CCCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 344555555543 356889999999999999999998764333
No 352
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.95 E-value=0.12 Score=53.47 Aligned_cols=28 Identities=21% Similarity=0.308 Sum_probs=24.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
..+|+|.|+.|+||||+|+.+.+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3689999999999999999999876543
No 353
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.94 E-value=0.093 Score=53.09 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=22.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
..+|+|.|++|+||||+|+.+.+.+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 354
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=91.91 E-value=0.45 Score=54.78 Aligned_cols=34 Identities=29% Similarity=0.393 Sum_probs=26.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhcc-ccCceeEE
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSY-EFDGSSFL 85 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~ 85 (1170)
+.++|.|.+|+|||+|+..+.+.+.. +-+.++|.
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~ 200 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG 200 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEE
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEE
Confidence 56899999999999999999987643 33455554
No 355
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=91.88 E-value=0.59 Score=53.55 Aligned_cols=34 Identities=29% Similarity=0.405 Sum_probs=26.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccc-cCceeEE
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYE-FDGSSFL 85 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~ 85 (1170)
+.++|.|.+|+|||+|+..+.+.+... -+.++|.
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~ 188 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 188 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEE
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEE
Confidence 578999999999999999999876433 2444443
No 356
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.82 E-value=0.093 Score=56.22 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=23.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
..+|.|.|++|+||||+|+.+...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 357
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.78 E-value=0.15 Score=55.52 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=23.1
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
...+|.|.|++|+||||+|+.+..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 358
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.76 E-value=0.099 Score=53.76 Aligned_cols=27 Identities=41% Similarity=0.539 Sum_probs=23.2
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 49 SDVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 49 ~~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
....+|+|+|+.|.||||+|+.+...+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 345789999999999999999998753
No 359
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.75 E-value=0.091 Score=53.73 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=22.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
..+|+|.|++|+||||+|+.+.+.+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998865
No 360
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.73 E-value=0.15 Score=52.77 Aligned_cols=44 Identities=27% Similarity=0.241 Sum_probs=32.0
Q ss_pred chhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 33 IESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 33 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
.+...+.+...+.. ...++|+|+|.+|+|||||+..+.......
T Consensus 14 ~~~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 14 NKRLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 34445555555543 356899999999999999999998765444
No 361
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=91.66 E-value=0.64 Score=55.67 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=23.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
+++.|+|.+|.||||++..+...+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 688899999999999999998876544
No 362
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.66 E-value=0.087 Score=54.81 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=22.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
..|+|.|++|+||||+|+.+++.+.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5789999999999999999988653
No 363
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.60 E-value=0.094 Score=53.76 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=19.9
Q ss_pred EEEEEeCCCccHHHHHHHHHh
Q 045458 53 MIGIWGMGGLGKTTLARVVYD 73 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~ 73 (1170)
+|+|.|+.|+||||+|+.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 364
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.57 E-value=0.097 Score=53.01 Aligned_cols=24 Identities=38% Similarity=0.662 Sum_probs=21.9
Q ss_pred EEEEEeCCCccHHHHHHHHHhhhc
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
+|+|.|+.|+||||+|+.+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 365
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.56 E-value=0.15 Score=56.00 Aligned_cols=47 Identities=26% Similarity=0.302 Sum_probs=32.1
Q ss_pred cccchhhHHHHHHHHcCC--CCCeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 30 LVGIESRLEKIRFLMGTG--SSDVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 30 ~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
++|-...+..+...+... .....+|+|.|..|+||||+|+.+.....
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344444454444333322 34567999999999999999999987654
No 366
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.45 E-value=0.099 Score=54.59 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.7
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
.+|+|+|+.|.||||+|+.+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998754
No 367
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.44 E-value=0.34 Score=56.08 Aligned_cols=36 Identities=28% Similarity=0.301 Sum_probs=27.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
...+++|+|..|+|||||++.++..++.. .+.+++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 35799999999999999999998866543 3445553
No 368
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.42 E-value=0.11 Score=52.59 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhh
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDS 74 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~ 74 (1170)
...+|+|+|+.|.||||+|+.+.+.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999875
No 369
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.35 E-value=0.11 Score=53.66 Aligned_cols=27 Identities=19% Similarity=0.318 Sum_probs=23.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
..+|+|.|+.|+||||+|+.+.+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999987654
No 370
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.33 E-value=0.14 Score=51.66 Aligned_cols=37 Identities=24% Similarity=0.294 Sum_probs=15.6
Q ss_pred CCcccCeEeccCcCCC-----ccCccccCCCCCCEEeccCCc
Q 045458 632 SMEDLSELFLDGTSIT-----EVPSSIELLTGLNVLNLNDCK 668 (1170)
Q Consensus 632 ~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~L~~~~ 668 (1170)
.-..|+.|+|++|.+. .+...+..-+.|+.|+|++|.
T Consensus 68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 3334444444444443 222333344445555554444
No 371
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.27 E-value=0.19 Score=50.80 Aligned_cols=63 Identities=19% Similarity=0.091 Sum_probs=30.1
Q ss_pred ccCCCCCCcEEEecCccCC-----ccCcchhcCCCCCEEeccCCCCCCc----CccccCCCCcccEEEeeCC
Q 045458 558 IVGNMECLSKLLLDGTAIG-----ELPLSIELLSKLVSLDLNNCKNFKN----LPVTISSLKCLRSLVLSGC 620 (1170)
Q Consensus 558 ~l~~l~~L~~L~L~~~~i~-----~l~~~i~~l~~L~~L~L~~~~~l~~----lp~~l~~l~~L~~L~L~~~ 620 (1170)
.+..-..|+.|+|++|.++ .+...+..-+.|++|+|+.|..... +...+..-+.|+.|+|+++
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 3344445555555555552 2333444445556666655543321 2233444445555555543
No 372
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.24 E-value=0.11 Score=53.34 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=22.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
.+|+|.|+.|+||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 689999999999999999998765
No 373
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.20 E-value=0.12 Score=53.20 Aligned_cols=27 Identities=37% Similarity=0.437 Sum_probs=23.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
...+|+|.|..|.|||||++.+...+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 347899999999999999999987654
No 374
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.20 E-value=0.11 Score=53.37 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=20.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYD 73 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~ 73 (1170)
.+|+|.|+.|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 375
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.15 E-value=0.11 Score=53.27 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.8
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
.+++|.|+.|+|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999998754
No 376
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.05 E-value=0.098 Score=54.49 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=22.8
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
...|+|.|++|+||||+|+.+++++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998764
No 377
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.04 E-value=0.12 Score=52.54 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=22.3
Q ss_pred EEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
+|+|.|..|+||||+|+.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987643
No 378
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.04 E-value=0.13 Score=51.31 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=23.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
..+|+|.|+.|.||||+|+.+...+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999988664
No 379
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.99 E-value=0.11 Score=54.22 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
...|+|.|++|+||||+|+.+.+.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3679999999999999999998765
No 380
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.99 E-value=0.16 Score=53.60 Aligned_cols=46 Identities=15% Similarity=0.121 Sum_probs=30.6
Q ss_pred HHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 41 RFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 41 ~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
.++|..+-..-.+++|.|.+|+||||+|.+++......-..++|+.
T Consensus 13 D~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 13 DEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp HHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3444332223368999999999999999988766543333455554
No 381
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.87 E-value=0.12 Score=54.80 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=22.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
..+|+|.|+.|+||||+++.+++++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999765
No 382
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.86 E-value=0.68 Score=55.06 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=28.4
Q ss_pred HHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 39 KIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 39 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
.+..+|..+-..-.+++|.|..|+|||||++.++.....
T Consensus 269 ~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 269 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 344555432233468999999999999999999876544
No 383
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.84 E-value=0.12 Score=53.35 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.6
Q ss_pred EEEEEeCCCccHHHHHHHHHhhh
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
.|+|.|++|+||||+|+.+.+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 384
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=90.83 E-value=0.56 Score=47.63 Aligned_cols=22 Identities=27% Similarity=0.208 Sum_probs=18.7
Q ss_pred EEEEEeCCCccHHHHHHHHHhh
Q 045458 53 MIGIWGMGGLGKTTLARVVYDS 74 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~ 74 (1170)
++.|+|.+|.|||++|......
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6789999999999999886544
No 385
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.76 E-value=0.098 Score=55.44 Aligned_cols=25 Identities=36% Similarity=0.551 Sum_probs=22.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
.+|+|.|+.|.||||+++.++..+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999998654
No 386
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.76 E-value=0.22 Score=57.36 Aligned_cols=41 Identities=27% Similarity=0.336 Sum_probs=30.3
Q ss_pred HHHHHHHcCC------C-CCeEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 38 EKIRFLMGTG------S-SDVRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 38 ~~l~~~L~~~------~-~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
++|.+++... . +..++|+|+|.+|+||||+|..++.....+
T Consensus 79 ~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 79 EELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp HHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4566666543 1 235789999999999999999998866543
No 387
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.72 E-value=0.29 Score=57.34 Aligned_cols=41 Identities=22% Similarity=0.252 Sum_probs=29.5
Q ss_pred HHHHHHHcCCC-------CCeEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 38 EKIRFLMGTGS-------SDVRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 38 ~~l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
++|.+++.... ...++|+|+|.+|+||||++..++..+..+
T Consensus 81 ~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 81 KELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp HHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 34556665421 346799999999999999999998766544
No 388
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.68 E-value=0.085 Score=54.48 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=21.9
Q ss_pred EEEEEeCCCccHHHHHHHHHhhhc
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
+|+|.|..|+||||+|+.+...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988764
No 389
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.63 E-value=0.12 Score=52.86 Aligned_cols=24 Identities=29% Similarity=0.363 Sum_probs=22.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
.+|+|.|+.|+||||+|+.+.+.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998876
No 390
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.61 E-value=0.13 Score=53.18 Aligned_cols=23 Identities=22% Similarity=0.370 Sum_probs=20.5
Q ss_pred EEEEEeCCCccHHHHHHHHHhhh
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
.|+|.|++|+||||+|+.+.+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 391
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=90.44 E-value=0.64 Score=47.39 Aligned_cols=109 Identities=12% Similarity=0.076 Sum_probs=53.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCC-ccccchhhHHHHHH
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDI-SIWHVEDGINIIGS 129 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~-~~~~~~~~~~~i~~ 129 (1170)
-.+..++|..|.||||.|...+.+...+-..+.++.-... .+.+ ...+.+.+...... ...+.. .+.+
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d--~R~g-----e~~i~s~~g~~~~a~~~~~~~----~~~~ 96 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID--NRYS-----EEDVVSHNGLKVKAVPVSASK----DIFK 96 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------------CCEEECSSGG----GGGG
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC--Ccch-----HHHHHhhcCCeeEEeecCCHH----HHHH
Confidence 4788999999999999999888876554333444431111 1111 11233333211110 111111 2222
Q ss_pred hhCCCeEEEEEeCCC--CHHHHHHhhcCcCCCCCCcEEEEEeCCch
Q 045458 130 RLRQKKVLLIIDDVA--DVEQLQSLAGKRDWFGPGSRILITTRDKQ 173 (1170)
Q Consensus 130 ~L~~k~~LlVLDdv~--~~~~l~~l~~~~~~~~~gsrIIiTTR~~~ 173 (1170)
...++--+|++|.+. +.++++.+.... ..|-.||+|-++..
T Consensus 97 ~~~~~~dvViIDEaQF~~~~~V~~l~~l~---~~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 97 HITEEMDVIAIDEVQFFDGDIVEVVQVLA---NRGYRVIVAGLDQD 139 (214)
T ss_dssp GCCSSCCEEEECCGGGSCTTHHHHHHHHH---HTTCEEEEEECSBC
T ss_pred HHhcCCCEEEEECcccCCHHHHHHHHHHh---hCCCEEEEEecccc
Confidence 333334499999873 234444333211 13779999999755
No 392
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.42 E-value=0.17 Score=52.21 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=23.3
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
..+|+|.|+.|.||||+|+.+...+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 47899999999999999999988764
No 393
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.41 E-value=0.14 Score=54.61 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=23.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
..+|+|.|+.|.||||+++.+++++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 36899999999999999999997653
No 394
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=90.32 E-value=0.55 Score=52.11 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=28.0
Q ss_pred hHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 36 RLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 36 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
-++.|..++-.+.+ +.++|.|.+|+|||+|+..+.+.+..
T Consensus 162 GiraID~l~PigrG--QR~lIfg~~g~GKT~Ll~~Ia~~i~~ 201 (427)
T 3l0o_A 162 STRLIDLFAPIGKG--QRGMIVAPPKAGKTTILKEIANGIAE 201 (427)
T ss_dssp HHHHHHHHSCCBTT--CEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred cchhhhhcccccCC--ceEEEecCCCCChhHHHHHHHHHHhh
Confidence 33444444433322 56899999999999999999987654
No 395
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=90.30 E-value=0.11 Score=52.90 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=22.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
++++|+|+.|+|||||++.+...+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999987553
No 396
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.25 E-value=0.16 Score=55.02 Aligned_cols=24 Identities=25% Similarity=0.595 Sum_probs=21.6
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHh
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYD 73 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~ 73 (1170)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999983
No 397
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.15 E-value=0.58 Score=53.75 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=23.1
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
...+|.|+|++|.||||+|+.++++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998754
No 398
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.00 E-value=0.15 Score=54.37 Aligned_cols=27 Identities=30% Similarity=0.365 Sum_probs=23.6
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
...+|.|.|++|.||||+|+.+.....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999988653
No 399
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.93 E-value=0.17 Score=51.84 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.8
Q ss_pred EEEEEeCCCccHHHHHHHHHhhhc
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
+|+|.|+.|.||||+|+.+...+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999988653
No 400
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.92 E-value=0.16 Score=52.56 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.7
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
..|+|.|++|+||||+|+.+.+++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998876
No 401
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.86 E-value=0.19 Score=52.07 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYD 73 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~ 73 (1170)
..+|+|.|+.|.||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
No 402
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.86 E-value=0.15 Score=55.96 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=23.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
.++|+|.|+.|+||||||..+++++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 36899999999999999999998653
No 403
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=89.81 E-value=0.97 Score=53.40 Aligned_cols=37 Identities=11% Similarity=-0.052 Sum_probs=28.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhccc-cCceeEEE
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMSYE-FDGSSFLA 86 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 86 (1170)
.-.++.|.|.+|+||||+|.+++.....+ -..++|+.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 34689999999999999999999876654 23455554
No 404
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.80 E-value=0.18 Score=55.59 Aligned_cols=25 Identities=32% Similarity=0.275 Sum_probs=22.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
.+|+|.|+.|+||||||+.++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998653
No 405
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.79 E-value=0.19 Score=53.24 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=22.8
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
...+|+|.|..|.||||||+.+...+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34789999999999999999998754
No 406
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=89.77 E-value=0.26 Score=54.21 Aligned_cols=30 Identities=23% Similarity=0.535 Sum_probs=24.9
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 49 SDVRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 49 ~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
...++|+|+|-||+||||+|..++..+..+
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~ 68 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL 68 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHC
Confidence 356889999999999999999998876554
No 407
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.71 E-value=0.17 Score=53.04 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=22.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
..|+|.|+.|+||||+|+.+++++.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999998764
No 408
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.68 E-value=0.18 Score=52.01 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.8
Q ss_pred EEEEEeCCCccHHHHHHHHHhhh
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
.|+|.|++|+||||+|+.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998865
No 409
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=89.68 E-value=0.89 Score=47.54 Aligned_cols=21 Identities=33% Similarity=0.360 Sum_probs=17.6
Q ss_pred EEEEEEeCCCccHHHHHHHHH
Q 045458 52 RMIGIWGMGGLGKTTLARVVY 72 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~ 72 (1170)
+.++|.|..|.||||++....
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 578999999999998776554
No 410
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.62 E-value=0.18 Score=55.31 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=22.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
++|+|.|+.|+||||||+.++.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999998653
No 411
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.60 E-value=0.18 Score=52.48 Aligned_cols=23 Identities=39% Similarity=0.468 Sum_probs=21.0
Q ss_pred EEEEEeCCCccHHHHHHHHHhhh
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
.|+|.|++|+||||+|+.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998865
No 412
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.59 E-value=0.18 Score=52.62 Aligned_cols=25 Identities=20% Similarity=0.423 Sum_probs=22.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
.+|+|.|++|.||||+|+.+...+.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999988663
No 413
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=89.59 E-value=0.19 Score=55.23 Aligned_cols=28 Identities=32% Similarity=0.405 Sum_probs=24.3
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 49 SDVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 49 ~~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
....+|+|.|..|.|||||++.+...+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4568999999999999999999987654
No 414
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=89.57 E-value=0.2 Score=48.94 Aligned_cols=26 Identities=35% Similarity=0.406 Sum_probs=23.0
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
.-.+++|.|..|.|||||++.++...
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34789999999999999999998765
No 415
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.57 E-value=0.21 Score=67.34 Aligned_cols=49 Identities=27% Similarity=0.350 Sum_probs=35.2
Q ss_pred HHHHHHHc-CCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 38 EKIRFLMG-TGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 38 ~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
..|..+|. .+-...+.|.|+|++|+|||+||.++......+=..+.|+.
T Consensus 1413 ~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1413 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred HHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 34556665 22234578999999999999999999887655544566665
No 416
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.36 E-value=0.27 Score=55.35 Aligned_cols=27 Identities=30% Similarity=0.186 Sum_probs=23.5
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 49 SDVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 49 ~~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
...++++|+|+.|.|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 445799999999999999999999754
No 417
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.31 E-value=0.29 Score=48.60 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=23.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
.++++|.|..|+|||||++.+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999887643
No 418
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=89.15 E-value=0.19 Score=51.57 Aligned_cols=24 Identities=25% Similarity=0.527 Sum_probs=21.9
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
.+++|.|+.|+|||||++.+....
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 689999999999999999998755
No 419
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.09 E-value=0.13 Score=55.85 Aligned_cols=27 Identities=19% Similarity=0.318 Sum_probs=20.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
+..+|+|.|..|.||||+|+.+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999987653
No 420
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=89.07 E-value=0.65 Score=53.05 Aligned_cols=29 Identities=28% Similarity=0.189 Sum_probs=24.7
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
..++|+|+|.+|+||||++..++..+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999998876544
No 421
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=88.97 E-value=0.16 Score=52.71 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.9
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
.+++|+|+.|+|||||++.+....
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 689999999999999999998755
No 422
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=88.94 E-value=0.48 Score=44.43 Aligned_cols=52 Identities=23% Similarity=0.301 Sum_probs=26.9
Q ss_pred EEEcCCCCCC--CCCCCCCCCceeEEEccCCChHHHhhc-CCCCCCCcEEEcCCCC
Q 045458 428 LLDWPGYPLK--SLPPNLQLDKTIEFKMLCSRIEELWKG-IKSLNMLKVMKVSYSQ 480 (1170)
Q Consensus 428 ~L~l~~~~l~--~lp~~~~l~~L~~L~L~~s~i~~L~~~-l~~l~~L~~L~Ls~~~ 480 (1170)
.++.++..++ ++|..+ +.+|++|+|++|+|..++.+ +..+++|+.|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 3444444544 555432 23355555555555555433 3556666666666664
No 423
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=88.83 E-value=0.37 Score=51.03 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=26.2
Q ss_pred HHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 40 IRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 40 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
+..++....+....|.++|++|.|||.+|.++++..
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 344444332334569999999999999999998853
No 424
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=88.83 E-value=1.1 Score=45.47 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=25.6
Q ss_pred EEEEEeCCCccHHHHHHHHHhhhccccCceeE
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSMSYEFDGSSF 84 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~ 84 (1170)
.|+|-|.-|+||||.++.+++.+..+.-.+++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~ 33 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 47899999999999999999988765433333
No 425
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.79 E-value=0.28 Score=51.84 Aligned_cols=23 Identities=30% Similarity=0.218 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYD 73 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~ 73 (1170)
-.+++|.|+.|+|||||++.++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999999884
No 426
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=88.76 E-value=0.2 Score=51.92 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=23.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
-.+++|.|+.|+|||||++.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 36899999999999999999988664
No 427
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=88.76 E-value=0.37 Score=51.36 Aligned_cols=27 Identities=26% Similarity=0.275 Sum_probs=23.6
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
...++++.|.||+||||++..++....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 457889999999999999999987665
No 428
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.74 E-value=0.24 Score=53.72 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=22.0
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
++|+|.|+.|+||||||..++.++
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 689999999999999999998765
No 429
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=88.72 E-value=0.17 Score=50.21 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=22.8
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
++++|+|..|.|||||++.+...+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57999999999999999999876554
No 430
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.55 E-value=0.24 Score=52.00 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=23.5
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 49 SDVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 49 ~~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
....+|+|.|+.|.||||+++.+..++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 445789999999999999999998765
No 431
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.46 E-value=1.6 Score=49.92 Aligned_cols=93 Identities=17% Similarity=0.155 Sum_probs=51.7
Q ss_pred HHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE-ecchhhccCCcHHHHHHHHHHHHhhcCCCcc
Q 045458 39 KIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA-DVREKSEKEGSVISLQKQLLSNLLKLGDISI 117 (1170)
Q Consensus 39 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~ 117 (1170)
.+..++. ..-.+|+|.|+.|.||||+++.+...+... ...+++. +-.+.. ..+. . + . ....
T Consensus 158 ~L~~l~~---~~ggii~I~GpnGSGKTTlL~allg~l~~~-~g~I~~~ed~ie~~-~~~~-~--------q---~-~v~~ 219 (418)
T 1p9r_A 158 NFRRLIK---RPHGIILVTGPTGSGKSTTLYAGLQELNSS-ERNILTVEDPIEFD-IDGI-G--------Q---T-QVNP 219 (418)
T ss_dssp HHHHHHT---SSSEEEEEECSTTSCHHHHHHHHHHHHCCT-TSCEEEEESSCCSC-CSSS-E--------E---E-ECBG
T ss_pred HHHHHHH---hcCCeEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEEecccchhc-cCCc-c--------e---E-EEcc
Confidence 4445542 234689999999999999999999876544 3334332 111100 0000 0 0 0 0000
Q ss_pred ccchhhHHHHHHhhCCCeEEEEEeCCCCHHHH
Q 045458 118 WHVEDGINIIGSRLRQKKVLLIIDDVADVEQL 149 (1170)
Q Consensus 118 ~~~~~~~~~i~~~L~~k~~LlVLDdv~~~~~l 149 (1170)
.........++..|+..+-++++..+.+.+..
T Consensus 220 ~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~ 251 (418)
T 1p9r_A 220 RVDMTFARGLRAILRQDPDVVMVGEIRDLETA 251 (418)
T ss_dssp GGTBCHHHHHHHHGGGCCSEEEESCCCSHHHH
T ss_pred ccCcCHHHHHHHHhccCCCeEEEcCcCCHHHH
Confidence 00012235567777777888888988776543
No 432
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=88.40 E-value=0.21 Score=50.37 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.4
Q ss_pred EEEEEeCCCccHHHHHHHHHhhhc
Q 045458 53 MIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
+++|+|..|+|||||++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999987654
No 433
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.22 E-value=0.25 Score=49.59 Aligned_cols=24 Identities=25% Similarity=0.169 Sum_probs=21.6
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
+.|.|.|..|+||||||.+++.+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 678999999999999999998763
No 434
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=88.22 E-value=0.32 Score=56.87 Aligned_cols=45 Identities=7% Similarity=-0.068 Sum_probs=31.4
Q ss_pred chhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 33 IESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 33 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
|.+-.+.+.+..........+|.+.|+.|.||||+|+++++++..
T Consensus 377 rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 377 YPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 333444555544221234478999999999999999999998764
No 435
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=87.99 E-value=0.43 Score=51.17 Aligned_cols=27 Identities=30% Similarity=0.596 Sum_probs=23.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
++|+|.|-||+||||+|..++..+..+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~ 28 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM 28 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC
Confidence 578889999999999999998876644
No 436
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=87.99 E-value=0.3 Score=53.67 Aligned_cols=28 Identities=36% Similarity=0.354 Sum_probs=24.2
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 49 SDVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 49 ~~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
....+|+|.|..|.|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999987654
No 437
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=87.95 E-value=0.35 Score=52.75 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=27.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhccccC-ceeEEE
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSYEFD-GSSFLA 86 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~~~~ 86 (1170)
-.+++|.|.+|+|||||++.++..+...-. .+.|+.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 368999999999999999999887654423 344443
No 438
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.90 E-value=0.29 Score=52.93 Aligned_cols=26 Identities=27% Similarity=0.192 Sum_probs=23.1
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
..++|+|.|+.|+||||||..++++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35789999999999999999998864
No 439
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=87.89 E-value=0.27 Score=53.79 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=21.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDS 74 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~ 74 (1170)
.+|.|.|++|.||||+|+.+.++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999874
No 440
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.87 E-value=0.31 Score=51.36 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=23.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
...|+|.|..|+||||+|+.+.+.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36899999999999999999998764
No 441
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=87.79 E-value=0.31 Score=50.91 Aligned_cols=28 Identities=32% Similarity=0.356 Sum_probs=24.7
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
...+|+|.|+.|+||||+++.+.+.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3478999999999999999999988764
No 442
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=87.73 E-value=0.4 Score=49.34 Aligned_cols=27 Identities=15% Similarity=0.011 Sum_probs=22.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
-.|.+.|.||+||||+|..++.....+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 347889999999999999988876544
No 443
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=87.62 E-value=0.18 Score=52.77 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=16.1
Q ss_pred EEEEEEeCCCccHHHHHHHHH-hhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVY-DSM 75 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~-~~~ 75 (1170)
.+++|.|+.|+|||||++.+. ...
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 689999999999999999998 643
No 444
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=87.58 E-value=4 Score=42.58 Aligned_cols=39 Identities=18% Similarity=0.069 Sum_probs=27.4
Q ss_pred cchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 32 GIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 32 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
=|+...+.+..++.. . . +.|+|..|.|||.+|..+....
T Consensus 94 l~~~Q~~ai~~~~~~--~--~-~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 94 LRDYQEKALERWLVD--K--R-GCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCHHHHHHHHHHTTT--S--E-EEEEESSSTTHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHhC--C--C-EEEEeCCCCCHHHHHHHHHHHc
Confidence 345555555555542 1 2 7789999999999999888765
No 445
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=87.58 E-value=0.43 Score=48.82 Aligned_cols=29 Identities=34% Similarity=0.533 Sum_probs=24.9
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccccC
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYEFD 80 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~f~ 80 (1170)
..|+|-|..|+||||+++.+++.+...++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 57999999999999999999998865443
No 446
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=87.51 E-value=0.73 Score=51.34 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=24.3
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 49 SDVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 49 ~~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
.+..+|+|.|.+|+||||++..+.....
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5568999999999999999999987554
No 447
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=87.41 E-value=0.43 Score=47.89 Aligned_cols=25 Identities=24% Similarity=0.057 Sum_probs=21.0
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
.++.|+|..|+||||+|..++.+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5788999999999999977776553
No 448
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=87.14 E-value=0.27 Score=50.43 Aligned_cols=23 Identities=30% Similarity=0.187 Sum_probs=20.8
Q ss_pred EEEEEEeCCCccHHHHHHHHHhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDS 74 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~ 74 (1170)
.+++|.|..|.|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998864
No 449
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=87.12 E-value=0.36 Score=49.30 Aligned_cols=48 Identities=19% Similarity=0.117 Sum_probs=20.1
Q ss_pred CCccCccccchhhHHHHHHHHcCCCCCeEEEEEEeCCCccHHHHHHHHHh
Q 045458 24 PETIKELVGIESRLEKIRFLMGTGSSDVRMIGIWGMGGLGKTTLARVVYD 73 (1170)
Q Consensus 24 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~~~~ 73 (1170)
|+.+...-|++...+.+.++... .+.--|+|.|.+|+|||||+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~m~~~~~~--~~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 5 HHHHHHSSGLVPRGSHMENLYFQ--GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp ---------------------------CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cccccccCCcccchhHHHhHhhc--CCeEEEEEECcCCCCHHHHHHHHHh
Confidence 33334444555555555554432 2335678999999999999998885
No 450
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=87.07 E-value=0.3 Score=51.33 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=22.1
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHhh
Q 045458 49 SDVRMIGIWGMGGLGKTTLARVVYDS 74 (1170)
Q Consensus 49 ~~~~vi~I~G~gGiGKTtLA~~~~~~ 74 (1170)
.. .+++|.|..|.|||||++.++.-
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 45 78999999999999999999853
No 451
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=86.84 E-value=0.38 Score=49.09 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=23.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
.+|+|.|+.|.||||+|+.+++++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999999874
No 452
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=86.83 E-value=0.51 Score=51.22 Aligned_cols=27 Identities=30% Similarity=0.562 Sum_probs=23.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
++|+|.|-||+||||+|..++..+..+
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~ 29 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEM 29 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 678889999999999999998876544
No 453
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=86.78 E-value=3.2 Score=47.33 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.3
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHh
Q 045458 49 SDVRMIGIWGMGGLGKTTLARVVYD 73 (1170)
Q Consensus 49 ~~~~vi~I~G~gGiGKTtLA~~~~~ 73 (1170)
...++..|.|.+|.||||+.++.++
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Confidence 4678999999999999999988864
No 454
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=86.71 E-value=1.6 Score=61.08 Aligned_cols=143 Identities=14% Similarity=0.085 Sum_probs=0.0
Q ss_pred EEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCccccchhhHHHHHHhh--
Q 045458 54 IGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDISIWHVEDGINIIGSRL-- 131 (1170)
Q Consensus 54 i~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~i~~~L-- 131 (1170)
|.++|++|+|||++|+.+.... +...++. ..-............+...+
T Consensus 1270 vLL~GPpGtGKT~la~~~l~~~----~~~~~~~-------------------------infsa~ts~~~~~~~i~~~~~~ 1320 (2695)
T 4akg_A 1270 IILCGPPGSGKTMIMNNALRNS----SLYDVVG-------------------------INFSKDTTTEHILSALHRHTNY 1320 (2695)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC----SSCEEEE-------------------------EECCTTCCHHHHHHHHHHHBCC
T ss_pred EEEECCCCCCHHHHHHHHHhcC----CCCceEE-------------------------EEeecCCCHHHHHHHHHHHhhh
Q ss_pred -------------CCCeEEEEEeCCCCH--------HHHHHhhcCcCCCC------------CCcEEEEEeCCch-----
Q 045458 132 -------------RQKKVLLIIDDVADV--------EQLQSLAGKRDWFG------------PGSRILITTRDKQ----- 173 (1170)
Q Consensus 132 -------------~~k~~LlVLDdv~~~--------~~l~~l~~~~~~~~------------~gsrIIiTTR~~~----- 173 (1170)
.+++.++.+||++-. ..++.+.......+ .+..+|.++....
T Consensus 1321 ~~~~~g~~~~P~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~ 1400 (2695)
T 4akg_A 1321 VTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRI 1400 (2695)
T ss_dssp EEETTTEEEEEBSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCC
T ss_pred ccccCCccccCCCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCc
Q ss_pred hhhhhCCCCccEEECCCCChHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHh
Q 045458 174 LLVAHEVDEEHILNLDVLNNDEALQLFSMKAFKTHQPVGEYVELSERVLEYA 225 (1170)
Q Consensus 174 v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~ 225 (1170)
.....-......+.++..+.++-.++|.......-...+....++..++..+
T Consensus 1401 ~l~~rllRrf~vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~at 1452 (2695)
T 4akg_A 1401 PMSERFTRHAAILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARAS 1452 (2695)
T ss_dssp CCCHHHHTTEEEEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHH
T ss_pred cCChhhhheeeEEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
No 455
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=86.68 E-value=0.54 Score=51.18 Aligned_cols=36 Identities=25% Similarity=0.203 Sum_probs=27.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
..++++|+|.+|+||||++..++..+... ...+.+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l~ 132 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLV 132 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEe
Confidence 35799999999999999999999876544 3344443
No 456
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=86.65 E-value=0.56 Score=53.39 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=22.0
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
+.++|.|.+|+|||+|+.++++....
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh
Confidence 44789999999999999999887654
No 457
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=86.62 E-value=0.4 Score=46.40 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDS 74 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~ 74 (1170)
+-|+|.|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999864
No 458
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=86.54 E-value=0.5 Score=51.04 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
.+++|+|.+|+||||||..++..+.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 6899999999999999999987544
No 459
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=86.53 E-value=0.3 Score=50.77 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=20.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYD 73 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~ 73 (1170)
.+++|.|..|.|||||++.++.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999875
No 460
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=86.40 E-value=0.38 Score=48.49 Aligned_cols=24 Identities=21% Similarity=0.301 Sum_probs=21.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDS 74 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~ 74 (1170)
.-.|+|.|..|+|||||++.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999999864
No 461
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=86.25 E-value=0.31 Score=51.09 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=20.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYD 73 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~ 73 (1170)
.+++|.|+.|.|||||++.+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 6899999999999999999875
No 462
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=86.24 E-value=0.56 Score=55.47 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=25.1
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhcccc
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMSYEF 79 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f 79 (1170)
...+|.++|++|.||||+|+++++.+...|
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 347899999999999999999998765443
No 463
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=86.05 E-value=0.43 Score=53.68 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
++|+|.|+.|+||||||..++.++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 6899999999999999999998654
No 464
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=85.82 E-value=0.48 Score=46.36 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYD 73 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~ 73 (1170)
..|+|.|.+|+|||||.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5689999999999999999976
No 465
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=85.74 E-value=0.88 Score=61.47 Aligned_cols=58 Identities=24% Similarity=0.319 Sum_probs=42.0
Q ss_pred ccccchhhHHHHHHHHc-CCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEE
Q 045458 29 ELVGIESRLEKIRFLMG-TGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLA 86 (1170)
Q Consensus 29 ~~vGr~~~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 86 (1170)
...+...-...|..+|. .+-..-+++.|+|.+|+||||||.+++......-..++|+.
T Consensus 360 ~~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis 418 (2050)
T 3cmu_A 360 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 418 (2050)
T ss_dssp SCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34556666677888886 22234579999999999999999999987665434456664
No 466
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=85.73 E-value=0.4 Score=50.74 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=22.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
.+++|.|..|.|||||++.++.-+..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 58999999999999999999875543
No 467
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=85.71 E-value=0.67 Score=47.64 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=24.2
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhhccc
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
.+|+|.|+.|+||||+++.+.+.+...
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999887654
No 468
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=85.60 E-value=0.59 Score=55.44 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=24.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhhhcc
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDSMSY 77 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~~~~ 77 (1170)
-.+|+|.|+.|.|||||++.++..+..
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 378999999999999999999987754
No 469
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=85.57 E-value=0.65 Score=61.88 Aligned_cols=100 Identities=20% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHc-CCCCCeEEEEEEeCCCccHHHHHHHHHhhhccccCceeEEEecchhhccCCcHHHHHHHHHHHHhhcCCCc
Q 045458 38 EKIRFLMG-TGSSDVRMIGIWGMGGLGKTTLARVVYDSMSYEFDGSSFLADVREKSEKEGSVISLQKQLLSNLLKLGDIS 116 (1170)
Q Consensus 38 ~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~ 116 (1170)
..|..+|. .+-..-+++.|+|.+|+||||||.+++......-..++|+. .+.... ....+.+--.+....-..
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis-----~E~s~~-~~~a~~lGvd~~~L~i~~ 442 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID-----AEHALD-PIYARKLGVDIDNLLCSQ 442 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC-----TTSCCC-HHHHHHTTCCGGGCEEEC
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE-----ccCchH-HHHHHHcCCCHHHeEEcC
Q ss_pred cccchhhHHHHHHhh-CCCeEEEEEeCC
Q 045458 117 IWHVEDGINIIGSRL-RQKKVLLIIDDV 143 (1170)
Q Consensus 117 ~~~~~~~~~~i~~~L-~~k~~LlVLDdv 143 (1170)
..+.++..+.+++.. +.+.-+||+|-+
T Consensus 443 ~~~~e~~l~~l~~lv~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 443 PDTGEQALEICDALARSGAVDVIVVDSV 470 (1706)
T ss_dssp CSSHHHHHHHHHHHHHHTCCSEEEESCS
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEECCH
No 470
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=85.56 E-value=0.41 Score=50.74 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=21.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDS 74 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~ 74 (1170)
.+++|.|..|.|||||++.++.-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 471
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=85.53 E-value=0.95 Score=50.25 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=24.1
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 49 SDVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 49 ~~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
....+++|.|.+|+|||||.+.+.....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 4568999999999999999999986543
No 472
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=85.35 E-value=0.69 Score=51.50 Aligned_cols=28 Identities=32% Similarity=0.458 Sum_probs=24.5
Q ss_pred CCeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 49 SDVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 49 ~~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
...+++.+.|.||+||||+|..++..+.
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la 43 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLA 43 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 4458899999999999999999988776
No 473
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=85.33 E-value=0.65 Score=47.89 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=18.1
Q ss_pred EEEEeCCCccHHHHHHHHHh
Q 045458 54 IGIWGMGGLGKTTLARVVYD 73 (1170)
Q Consensus 54 i~I~G~gGiGKTtLA~~~~~ 73 (1170)
|+|.|.+|+|||+|+..+..
T Consensus 16 ivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHh
Confidence 67899999999999999875
No 474
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=85.28 E-value=0.42 Score=48.51 Aligned_cols=24 Identities=21% Similarity=0.301 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDS 74 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~ 74 (1170)
...|+|.|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999864
No 475
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=85.28 E-value=0.42 Score=51.15 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=21.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDS 74 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~ 74 (1170)
.+++|.|..|.|||||++.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999874
No 476
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=85.28 E-value=0.55 Score=51.80 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=23.2
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
.+++++|.|+.|.|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 47899999999999999999998653
No 477
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=85.23 E-value=0.37 Score=51.78 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.3
Q ss_pred EEEEEEeCCCccHHHHHHHHHh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYD 73 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~ 73 (1170)
.+++|.|+.|.|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999875
No 478
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=85.10 E-value=0.38 Score=51.40 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=20.8
Q ss_pred EEEEEEeCCCccHHHHHHHHHhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDS 74 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~ 74 (1170)
.+++|.|..|.|||||++.++.-
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999753
No 479
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=85.09 E-value=0.29 Score=52.39 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=23.4
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhhc
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSMS 76 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~~ 76 (1170)
....|+|.|..|+||||+|+.+.+.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999987653
No 480
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.08 E-value=0.38 Score=50.60 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYD 73 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~ 73 (1170)
.+++|.|..|.|||||.+.++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999975
No 481
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=84.97 E-value=0.41 Score=47.90 Aligned_cols=21 Identities=38% Similarity=0.427 Sum_probs=19.0
Q ss_pred EEEEEeCCCccHHHHHHHHHh
Q 045458 53 MIGIWGMGGLGKTTLARVVYD 73 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~ 73 (1170)
-|+|.|.+|+|||||++.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999876
No 482
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=84.95 E-value=0.33 Score=49.97 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.7
Q ss_pred EEEEEEeCCCccHHHHHHHHHhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDS 74 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~ 74 (1170)
.+++|.|..|.|||||++.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999999753
No 483
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=84.88 E-value=0.48 Score=45.88 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=19.6
Q ss_pred EEEEEeCCCccHHHHHHHHHhh
Q 045458 53 MIGIWGMGGLGKTTLARVVYDS 74 (1170)
Q Consensus 53 vi~I~G~gGiGKTtLA~~~~~~ 74 (1170)
-|++.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999863
No 484
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=84.87 E-value=0.42 Score=50.39 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYD 73 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~ 73 (1170)
-.+++|.|..|.|||||++.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999975
No 485
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=84.87 E-value=0.34 Score=51.16 Aligned_cols=37 Identities=22% Similarity=0.126 Sum_probs=26.0
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhh-ccccCceeEEE
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSM-SYEFDGSSFLA 86 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~-~~~f~~~~~~~ 86 (1170)
.-.++.|.|.+|+|||++|.+++... ...-..+.|+.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 34689999999999999999876543 33233344544
No 486
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=84.84 E-value=0.4 Score=50.05 Aligned_cols=24 Identities=25% Similarity=0.544 Sum_probs=21.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
.+++|.|..|.|||||++.++.-+
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998643
No 487
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=84.81 E-value=0.61 Score=45.60 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.9
Q ss_pred EEEEEEeCCCccHHHHHHHHHhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDS 74 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~ 74 (1170)
+-|.|.|.+|+||||+|.++..+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 56889999999999999999874
No 488
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=84.81 E-value=0.4 Score=51.32 Aligned_cols=23 Identities=39% Similarity=0.605 Sum_probs=20.9
Q ss_pred EEEEEEeCCCccHHHHHHHHHhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDS 74 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~ 74 (1170)
.+++|.|..|.|||||++.+..-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 68999999999999999999753
No 489
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=84.81 E-value=0.4 Score=51.06 Aligned_cols=22 Identities=36% Similarity=0.449 Sum_probs=20.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYD 73 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~ 73 (1170)
.+++|.|..|.|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999875
No 490
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=84.78 E-value=0.4 Score=51.16 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.8
Q ss_pred EEEEEEeCCCccHHHHHHHHHhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDS 74 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~ 74 (1170)
.+++|.|..|.|||||++.++.-
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Confidence 68999999999999999998753
No 491
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=84.68 E-value=0.41 Score=50.60 Aligned_cols=22 Identities=41% Similarity=0.724 Sum_probs=20.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYD 73 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~ 73 (1170)
.+++|.|..|.|||||++.++.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999875
No 492
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=84.67 E-value=0.93 Score=47.57 Aligned_cols=29 Identities=28% Similarity=0.334 Sum_probs=23.5
Q ss_pred CeEEEEEE-eCCCccHHHHHHHHHhhhccc
Q 045458 50 DVRMIGIW-GMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 50 ~~~vi~I~-G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
..++|+|+ +-||+||||+|..++..+..+
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~ 32 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQE 32 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhC
Confidence 34778787 568999999999999877665
No 493
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=84.66 E-value=0.56 Score=46.83 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDS 74 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~ 74 (1170)
...|+|.|.+|+|||||++.+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999863
No 494
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=84.59 E-value=0.53 Score=47.28 Aligned_cols=25 Identities=28% Similarity=0.181 Sum_probs=21.6
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhh
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDS 74 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~ 74 (1170)
....|+|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999998764
No 495
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=84.57 E-value=0.44 Score=54.26 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.8
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHh
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYD 73 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~ 73 (1170)
...+++|.|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 446999999999999999999986
No 496
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=84.53 E-value=0.43 Score=49.30 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.4
Q ss_pred EEEEEEeCCCccHHHHHHHHHhhh
Q 045458 52 RMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 52 ~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
.+|+|.|+.|.||||+|+.+...+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999998764
No 497
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=84.50 E-value=0.68 Score=47.12 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=22.5
Q ss_pred EEEEEE-eCCCccHHHHHHHHHhhhccc
Q 045458 52 RMIGIW-GMGGLGKTTLARVVYDSMSYE 78 (1170)
Q Consensus 52 ~vi~I~-G~gGiGKTtLA~~~~~~~~~~ 78 (1170)
++|+|+ +-||+||||+|..++..+..+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~ 29 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRS 29 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHC
Confidence 577887 789999999999998877654
No 498
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=84.50 E-value=1.1 Score=56.46 Aligned_cols=22 Identities=27% Similarity=0.019 Sum_probs=20.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHH
Q 045458 51 VRMIGIWGMGGLGKTTLARVVY 72 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~ 72 (1170)
-++++|+|+.|.||||+.+.+.
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999999984
No 499
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=84.48 E-value=0.62 Score=45.32 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=20.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHhh
Q 045458 51 VRMIGIWGMGGLGKTTLARVVYDS 74 (1170)
Q Consensus 51 ~~vi~I~G~gGiGKTtLA~~~~~~ 74 (1170)
.--|+|.|.+|+|||||+..+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999999863
No 500
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=84.48 E-value=0.49 Score=51.50 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=22.9
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHhhh
Q 045458 50 DVRMIGIWGMGGLGKTTLARVVYDSM 75 (1170)
Q Consensus 50 ~~~vi~I~G~gGiGKTtLA~~~~~~~ 75 (1170)
.-.+++|+|..|.|||||++.+..-+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34689999999999999999998765
Done!