BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045467
(237 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A6NNE9|MARHB_HUMAN E3 ubiquitin-protein ligase MARCH11 OS=Homo sapiens GN=MARCH11 PE=2
SV=3
Length = 402
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 74/209 (35%), Gaps = 26/209 (12%)
Query: 19 QEVDNSADDANSSLRLPTIVISNG---ESHIEPNDNDKSNSSKGEPPKKDIL-------- 67
QEV + D RLP + G ES + + +P + +
Sbjct: 94 QEVAAAGDSGEGPRRLPEAAAAKGGPGESEAGAGGERERRGAGDQPETRSVCSSRSSSSG 153
Query: 68 ---SRTASSHEQ----CRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCE 120
R H+ C++C Q E+ + C+C G + H+ C+ W +GS CE
Sbjct: 154 GGDQRAGHQHQHHQPICKICFQGAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTCE 213
Query: 121 IC----QQVAVNVPTPESQPSTNYL----VWSIDPTFRSQDRERGCFSPLWVAFSILIGG 172
+C +A+ + P S + V I S LW AFS
Sbjct: 214 LCCYRYHVIAIKMKQPCQWQSISITLVEKVQMIAVILGSLFLIASVTWLLWSAFSPYAVW 273
Query: 173 LLLDVLISITLGVSALPVNIIIGVIVVLG 201
D+L I G+ + IG+IV G
Sbjct: 274 QRKDILFQICYGMYGFMDLVCIGLIVHEG 302
>sp|Q0IH10|MARH3_XENLA E3 ubiquitin-protein ligase MARCH3 OS=Xenopus laevis GN=march3 PE=2
SV=1
Length = 252
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 74 HEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQ 123
H CR+C + + + C+C G L HRSC+ W + ++ CE+C
Sbjct: 67 HPMCRICHEGSTQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCH 116
>sp|Q9P0N8|MARH2_HUMAN E3 ubiquitin-protein ligase MARCH2 OS=Homo sapiens GN=MARCH2 PE=1
SV=1
Length = 246
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 67/175 (38%), Gaps = 26/175 (14%)
Query: 70 TASSHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQ-QVAVN 128
T S CR+C + + C C G L H+SC+ W + ++ CE+C + AV
Sbjct: 57 TPSDGPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVE 116
Query: 129 V-PTPESQPSTNYLVWSIDPTFRSQDRERGC-------FSPL-----WVAFSILIGGLLL 175
P P ++ W DP R++ R C +PL W+ L L
Sbjct: 117 KRPRPLTE-------WLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRL 169
Query: 176 DVLISITLGVSALPVNIIIGVIVVLGLGTALRLALEFCREWSLRRVVQRVETNVN 230
+ V + + I + I VL + R + EW R+ Q+V +
Sbjct: 170 HSQLE---AVGLIALTIALFTIYVLWTLVSFRYHCQLYSEW--RKTNQKVRLKIR 219
>sp|Q6NZQ8|MARH1_MOUSE E3 ubiquitin-protein ligase MARCH1 OS=Mus musculus GN=March1 PE=1
SV=2
Length = 289
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 49 NDNDKSNSSKGEPPK-KDILSRTASSHEQCRVC--QQDKEEVLIDLGCQCRGGLAKAHRS 105
N + S+ + G P+ + LS S+ + CR+C + D+E LI C+C G L H+S
Sbjct: 51 NISKASSPTTGTAPRSQSRLSVCPSTQDICRICHCEGDEESPLIT-PCRCTGTLRFVHQS 109
Query: 106 CINTWFRTKGSNKCEICQ 123
C++ W ++ + CE+C+
Sbjct: 110 CLHQWIKSSDTRCCELCK 127
>sp|Q5I0I2|MARH2_RAT E3 ubiquitin-protein ligase MARCH2 OS=Rattus norvegicus GN=March2
PE=1 SV=1
Length = 246
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 68/171 (39%), Gaps = 20/171 (11%)
Query: 70 TASSHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQ-QVAVN 128
T S CR+C + + C C G L H+SC+ W + ++ CE+C + AV
Sbjct: 57 TPSDCPFCRICHEGANGENLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVE 116
Query: 129 V-PTPESQPSTNYLVWSIDPTFRSQDRERGCFSPLWVAFSILI---GGLLLD------VL 178
P P ++ W DP R++ R C +V + L G L L L
Sbjct: 117 KRPRPLTE-------WLKDPGPRTEKRTLCCDMVCFVFITPLAAISGWLCLRGAQDHLRL 169
Query: 179 ISITLGVSALPVNIIIGVIVVLGLGTALRLALEFCREWSLRRVVQRVETNV 229
S V + + I + I VL + R + EW R+ Q+V +
Sbjct: 170 HSRLEAVGLIALTIALFTIYVLWTLVSFRYHCQLYSEW--RKTNQKVRLKI 218
>sp|Q32L65|MARH2_BOVIN E3 ubiquitin-protein ligase MARCH2 OS=Bos taurus GN=MARCH2 PE=2
SV=1
Length = 245
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 68/174 (39%), Gaps = 24/174 (13%)
Query: 70 TASSHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQ-QVAVN 128
T S CR+C + + C C G L H+SC+ W + ++ CE+C + AV
Sbjct: 57 TPSDGPFCRICHEGANGESLLSPCGCSGTLGAVHKSCLERWLSSSNTSYCELCHTEFAVE 116
Query: 129 VPTPESQPSTNYLVWSIDPTFRSQDRERGC-------FSPL-----WVAFSILIGGLLLD 176
+ S + W DP R++ R C +PL W+ L L
Sbjct: 117 ------KRSRSLTEWLKDPGPRTEKRTLCCDVVCFLFITPLAAISGWLCLRGAQDHLRLH 170
Query: 177 VLISITLGVSALPVNIIIGVIVVLGLGTALRLALEFCREWSLRRVVQRVETNVN 230
+ LG+ AL I + I VL + R + EW RR Q+V +
Sbjct: 171 SHLE-ALGLIAL--TIALFTIYVLWTLVSFRYHCQLYSEW--RRTNQKVRLKMQ 219
>sp|Q99M02|MARH2_MOUSE E3 ubiquitin-protein ligase MARCH2 OS=Mus musculus GN=March2 PE=2
SV=1
Length = 246
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 66/164 (40%), Gaps = 20/164 (12%)
Query: 77 CRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQ-QVAVNV-PTPES 134
CR+C + + C C G L H+SC+ W + ++ CE+C + AV P P +
Sbjct: 64 CRICHEGANGENLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPRPLT 123
Query: 135 QPSTNYLVWSIDPTFRSQDRERGCFSPLWVAFSILI---GGLLLD------VLISITLGV 185
+ W DP R++ R C +V + L G L L L S V
Sbjct: 124 E-------WLKDPGPRTEKRTLCCDMVCFVFITPLAAISGWLCLRGAQDHLRLHSRLEAV 176
Query: 186 SALPVNIIIGVIVVLGLGTALRLALEFCREWSLRRVVQRVETNV 229
+ + I + I VL + R + EW R+ Q+V +
Sbjct: 177 GLIALTIALFTIYVLWTLVSFRYHCQLYSEW--RKTNQKVRLKI 218
>sp|Q8TCQ1|MARH1_HUMAN E3 ubiquitin-protein ligase MARCH1 OS=Homo sapiens GN=MARCH1 PE=1
SV=1
Length = 289
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 49 NDNDKSNSSKGEPPK-KDILSRTASSHEQCRVC--QQDKEEVLIDLGCQCRGGLAKAHRS 105
N + S+ + G P+ + LS S+ + CR+C + D+E LI C+C G L H+S
Sbjct: 51 NISKASSPTTGTAPRSQSRLSVCPSTQDICRICHCEGDEESPLIT-PCRCTGTLRFVHQS 109
Query: 106 CINTWFRTKGSNKCEICQ 123
C++ W ++ + CE+C+
Sbjct: 110 CLHQWIKSSDTRCCELCK 127
>sp|Q28EX7|MARH2_XENTR E3 ubiquitin-protein ligase MARCH2 OS=Xenopus tropicalis GN=march2
PE=2 SV=1
Length = 246
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 64/163 (39%), Gaps = 26/163 (15%)
Query: 77 CRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQ-QVAVN-VPTPES 134
CR+C + + C C G L H++C+ W + ++ CE+C + AV P P +
Sbjct: 64 CRICHEGGNGERLLSPCDCTGTLGTVHKTCLEKWLSSSNTSYCELCHTEFAVERRPRPVT 123
Query: 135 QPSTNYLVWSIDPTFRSQDRERGC-------FSPL-----WVAFSILIGGLLLDVLISIT 182
+ W DP R++ R C +PL W+ L + +
Sbjct: 124 E-------WLKDPGPRNEKRTLFCDMVCFLFITPLAAISGWLCLRGAQDHLQFNSRLE-- 174
Query: 183 LGVSALPVNIIIGVIVVLGLGTALRLALEFCREWSLRRVVQRV 225
V + + I + I VL + R + EW RR Q+V
Sbjct: 175 -AVGLIALTIALFTIYVLWTLVSFRYHCQLYSEW--RRTNQKV 214
>sp|Q86UD3|MARH3_HUMAN E3 ubiquitin-protein ligase MARCH3 OS=Homo sapiens GN=MARCH3 PE=2
SV=1
Length = 253
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 76 QCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQ 123
CR+C + + + C+C G L HRSC+ W + ++ CE+C
Sbjct: 70 MCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCH 117
>sp|Q68FA7|MARH3_XENTR E3 ubiquitin-protein ligase MARCH3 OS=Xenopus tropicalis GN=march3
PE=2 SV=1
Length = 251
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 31/60 (51%)
Query: 64 KDILSRTASSHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQ 123
+ + +++ + CR+C + + + C+C G L HRSC+ W + ++ CE+C
Sbjct: 56 RTLTTQSFNDRPMCRICHEGSTQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCH 115
>sp|Q5PQ35|MARH2_XENLA E3 ubiquitin-protein ligase MARCH2 OS=Xenopus laevis GN=march2 PE=2
SV=1
Length = 246
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 63/163 (38%), Gaps = 26/163 (15%)
Query: 77 CRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQ-QVAVN-VPTPES 134
CR+C + + C C G L H++C+ W + ++ CE+C + AV P P +
Sbjct: 64 CRICHEGGNGERLLSPCDCTGTLGTVHKTCLEKWLSSSNTSYCELCHTEFAVERRPRPVT 123
Query: 135 QPSTNYLVWSIDPTFRSQDRERGC-------FSPL-----WVAFSILIGGLLLDVLISIT 182
+ W DP R + R C +PL W+ L + +
Sbjct: 124 E-------WLKDPGPRHEKRTLFCDMVCFLFITPLAAISGWLCLRGAQDHLQFNSRLE-- 174
Query: 183 LGVSALPVNIIIGVIVVLGLGTALRLALEFCREWSLRRVVQRV 225
V + + I + I VL + R + EW RR Q+V
Sbjct: 175 -AVGLIALTIALFTIYVLWTLVSFRYHCQLYSEW--RRTNQKV 214
>sp|Q5XIE5|MARH3_RAT E3 ubiquitin-protein ligase MARCH3 OS=Rattus norvegicus GN=March3
PE=1 SV=1
Length = 253
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 76 QCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQ 123
CR+C + + + C+C G L HRSC+ W + ++ CE+C
Sbjct: 70 MCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCH 117
>sp|Q5XH39|MARH8_XENLA E3 ubiquitin-protein ligase MARCH8 OS=Xenopus laevis GN=march8 PE=2
SV=2
Length = 264
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 54 SNSSKGEPPKKDILSRTASSHEQCRVC--QQDKEEVLIDLGCQCRGGLAKAHRSCINTWF 111
S +S P + S T SS + CR+C + D E LI C C G L H++C+ W
Sbjct: 30 SPTSVSAPSRFPRTSVTPSSQDICRICHCEGDDESPLIT-PCHCTGSLHFVHQACLQQWI 88
Query: 112 RTKGSNKCEICQ 123
++ + CE+C+
Sbjct: 89 KSSDTRCCELCK 100
>sp|Q9DBD2|MARH8_MOUSE E3 ubiquitin-protein ligase MARCH8 OS=Mus musculus GN=March8 PE=2
SV=1
Length = 286
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 13/91 (14%)
Query: 42 GESHIEPNDNDKSNSSKGEPPKK----DILSRTA---SSHEQCRVC--QQDKEEVLIDLG 92
G S P++ K+ SS PP SRT+ S+ + CR+C + D E LI
Sbjct: 37 GHSMSHPSNISKAGSS---PPSTTAPVSAFSRTSVTPSNQDICRICHCEGDDESPLIT-P 92
Query: 93 CQCRGGLAKAHRSCINTWFRTKGSNKCEICQ 123
C C G L H++C+ W ++ + CE+C+
Sbjct: 93 CHCTGSLHFVHQACLQQWIKSSDTRCCELCK 123
>sp|A0JN69|MARH3_BOVIN E3 ubiquitin-protein ligase MARCH3 OS=Bos taurus GN=MARCH3 PE=2
SV=1
Length = 253
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 76 QCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQ 123
CR+C + + + C+C G L HRSC+ W + ++ CE+C
Sbjct: 70 MCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCH 117
>sp|Q8BRX9|MARH3_MOUSE E3 ubiquitin-protein ligase MARCH3 OS=Mus musculus GN=March3 PE=2
SV=1
Length = 218
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 76 QCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQ 123
CR+C + + + C+C G L HRSC+ W + ++ CE+C
Sbjct: 70 MCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCH 117
>sp|Q1LVZ2|MARH2_DANRE E3 ubiquitin-protein ligase MARCH2 OS=Danio rerio GN=march2 PE=2
SV=1
Length = 249
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 67/172 (38%), Gaps = 27/172 (15%)
Query: 70 TASSHEQCRVCQQDKE----EVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQV 125
T S CR+C + ++ E L+ C C G L H+SC+ W + ++ CE+C
Sbjct: 57 TQSDRPICRICHEGQDVCNSEGLLS-PCDCTGTLGTVHKSCLEKWLSSSNTSYCELCHTE 115
Query: 126 AVNVPTPESQPSTNYLVWSIDPTFRSQDRERGC-------FSPL-----WVAFSILIGGL 173
P +P T W DP R++ R C +PL W+ L
Sbjct: 116 FTIERRP--RPLTE---WLRDPGPRNEKRTLFCDMVCFLFITPLAAISGWLCLRGAQDHL 170
Query: 174 LLDVLISITLGVSALPVNIIIGVIVVLGLGTALRLALEFCREWSLRRVVQRV 225
+ + V + + I + I VL + R + EW RR Q+V
Sbjct: 171 HFNSRLE---AVGLIALTIALFTIYVLWTLVSFRYHCQLYSEW--RRTNQKV 217
>sp|P27426|VIE1_BHV4D Probable E3 ubiquitin-protein ligase IE1 OS=Bovine herpesvirus 4
(strain DN-599) GN=IE1 PE=3 SV=1
Length = 285
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 45/113 (39%), Gaps = 17/113 (15%)
Query: 22 DNSADDANSSLRLPTIVISNGESHIEPNDNDKSNSSKGEPPK------KDI-----LSRT 70
+++ DA S R V +H + + N +KGE KDI S
Sbjct: 71 EDTPSDAESETRFMPFV-----AHSKQPKHTSKNPTKGEIQYFPVEKCKDIHRVENQSSI 125
Query: 71 ASSHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQ 123
+QC +C+ D E + C C G L H C+ TW G KC+ CQ
Sbjct: 126 DEEGKQCWICR-DGESLPEARYCNCYGDLQYCHEECLKTWISMSGEKKCKFCQ 177
>sp|Q86YJ5|MARH9_HUMAN E3 ubiquitin-protein ligase MARCH9 OS=Homo sapiens GN=MARCH9 PE=1
SV=2
Length = 346
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 76 QCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEIC----QQVAVNVPT 131
QCR+C Q E+ + C+C G + H+ C+ W +GS CE+C Q +A++
Sbjct: 109 QCRICFQGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAISTKN 168
Query: 132 P 132
P
Sbjct: 169 P 169
>sp|Q28IK8|MARH8_XENTR E3 ubiquitin-protein ligase MARCH8 OS=Xenopus tropicalis GN=march8
PE=2 SV=1
Length = 264
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 54 SNSSKGEPPKKDILSRTASSHEQCRVC--QQDKEEVLIDLGCQCRGGLAKAHRSCINTWF 111
S +S P S T SS + CR+C + D E LI C C G L H++C+ W
Sbjct: 30 SPTSVSAPSSFPRTSVTPSSQDICRICHCEGDDESPLIT-PCHCTGSLHFVHQACLQQWI 88
Query: 112 RTKGSNKCEICQ 123
++ + CE+C+
Sbjct: 89 KSSDTRCCELCK 100
>sp|Q3TZ87|MARH9_MOUSE E3 ubiquitin-protein ligase MARCH9 OS=Mus musculus GN=March9 PE=2
SV=1
Length = 348
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 76 QCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEIC----QQVAVNVPT 131
QCR+C Q E+ + C+C G + H+ C+ W +GS CE+C Q +A++
Sbjct: 109 QCRICFQGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAISTKN 168
Query: 132 P 132
P
Sbjct: 169 P 169
>sp|Q0P496|MARH4_DANRE E3 ubiquitin-protein ligase MARCH4 OS=Danio rerio GN=march4 PE=2
SV=1
Length = 421
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 77 CRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEIC----QQVAVNVPTP 132
CR+C Q E+ + C+C G + H C+ W +GS CE+C Q +A++ P
Sbjct: 143 CRICFQGPEQGELLSPCRCSGSVRCTHEPCLIKWISERGSWSCELCYYKYQVIAISTKNP 202
>sp|Q5T0T0|MARH8_HUMAN E3 ubiquitin-protein ligase MARCH8 OS=Homo sapiens GN=MARCH8 PE=1
SV=1
Length = 291
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 68 SRTASSHEQCRVC--QQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQ 123
S T SS + CR+C + D E LI C C G L H++C+ W ++ + CE+C+
Sbjct: 71 SITPSSQDICRICHCEGDDESPLIT-PCHCTGSLHFVHQACLQQWIKSSDTRCCELCK 127
>sp|A6P320|MARHB_RAT E3 ubiquitin-protein ligase MARCH11 OS=Rattus norvegicus GN=March11
PE=1 SV=1
Length = 398
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 54/138 (39%), Gaps = 10/138 (7%)
Query: 74 HEQ--CRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEIC----QQVAV 127
H Q C++C Q E+ + C+C G + H+ C+ W +GS CE+C A+
Sbjct: 161 HHQPICKICFQGAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYHVTAI 220
Query: 128 NVPTPESQPSTNYL----VWSIDPTFRSQDRERGCFSPLWVAFSILIGGLLLDVLISITL 183
+ P S + V I S LW AFS D+L I
Sbjct: 221 KMKQPCQWQSISITLVEKVQMIAVILGSLFLIASVTWLLWSAFSPYAVWQRKDILFQICY 280
Query: 184 GVSALPVNIIIGVIVVLG 201
G+ + IG+IV G
Sbjct: 281 GMYGFMDLVCIGLIVHEG 298
>sp|Q8CBH7|MARHB_MOUSE E3 ubiquitin-protein ligase MARCH11 OS=Mus musculus GN=March11 PE=2
SV=2
Length = 400
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 54/138 (39%), Gaps = 10/138 (7%)
Query: 74 HEQ--CRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEIC----QQVAV 127
H Q C++C Q E+ + C+C G + H+ C+ W +GS CE+C A+
Sbjct: 163 HHQPICKICFQGAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYHVTAI 222
Query: 128 NVPTPESQPSTNYL----VWSIDPTFRSQDRERGCFSPLWVAFSILIGGLLLDVLISITL 183
+ P S + V I S LW AFS D+L I
Sbjct: 223 KMKQPCQWQSISITLVEKVQMIAVILGSLFLIASVTWLLWSAFSPYAVWQRKDILFQICY 282
Query: 184 GVSALPVNIIIGVIVVLG 201
G+ + IG+IV G
Sbjct: 283 GMYGFMDLVCIGLIVHEG 300
>sp|Q0VD59|MARH8_BOVIN E3 ubiquitin-protein ligase MARCH8 OS=Bos taurus GN=MARCH8 PE=2
SV=1
Length = 289
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 68 SRTASSHEQCRVC--QQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQ 123
S T S+ + CR+C + D E LI C+C G L H++C+ W ++ + CE+C+
Sbjct: 69 SVTPSNQDICRICHCEGDDESPLIT-PCRCTGSLHFVHQTCLQQWIKSSDTRCCELCK 125
>sp|Q9P2E8|MARH4_HUMAN E3 ubiquitin-protein ligase MARCH4 OS=Homo sapiens GN=MARCH4 PE=2
SV=2
Length = 410
Score = 38.9 bits (89), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 77 CRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEIC 122
CR+C Q E+ + C+C G + H+ C+ W +G CE+C
Sbjct: 163 CRICFQGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELC 208
>sp|Q80TE3|MARH4_MOUSE E3 ubiquitin-protein ligase MARCH4 OS=Mus musculus GN=March4 PE=2
SV=3
Length = 409
Score = 38.1 bits (87), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 77 CRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEIC 122
CR+C Q E+ + C+C G + H+ C+ W +G CE+C
Sbjct: 162 CRICFQGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELC 207
>sp|P40318|DOA10_YEAST ERAD-associated E3 ubiquitin-protein ligase DOA10 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SSM4 PE=1
SV=1
Length = 1319
Score = 37.7 bits (86), Expect = 0.065, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 71 ASSHEQCRVCQ-QDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSN--------KCEI 121
A S CR+C+ + E+ + C+CRG + H SC+ W +K + KC+I
Sbjct: 33 APSGATCRICRGEATEDNPLFHPCKCRGSIKYMHESCLLEWVASKNIDISKPGADVKCDI 92
Query: 122 CQ 123
C
Sbjct: 93 CH 94
>sp|O29269|RADA_ARCFU DNA repair and recombination protein RadA OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=radA PE=3 SV=1
Length = 337
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 106 CINTWFRTKGSNKCEICQQVAVNVPTPESQPSTNYLVWSIDP--TFRSQ 152
I +F GS K +IC Q+AVNV PE + V ID TFR +
Sbjct: 109 AITEFFGEFGSGKTQICHQLAVNVQLPEDEGGLEGSVIIIDTENTFRPE 157
>sp|P90495|MIR1_HHV8P E3 ubiquitin-protein ligase MIR1 OS=Human herpesvirus 8 type P
(isolate GK18) GN=K3 PE=1 SV=1
Length = 333
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 93 CQCRGGLAKAHRSCINTWFRTKGSNKCEICQQV 125
C C G L HRSC++TW + C+IC V
Sbjct: 24 CGCTGELENVHRSCLSTWLTISRNTACQICGVV 56
>sp|O74349|LTN1_SCHPO E3 ubiquitin-protein ligase listerin OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC21D10.09c PE=3 SV=1
Length = 1610
Score = 35.8 bits (81), Expect = 0.24, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 10/65 (15%)
Query: 66 ILSRTASSH----EQCRVCQQ--DKEEVLIDLGC-QCRGGLAKAHRSCINTWFRTKGSNK 118
+L + S H E+C +C E L + C CR K H SC+ WF++ S++
Sbjct: 1543 VLKKNISMHFEGVEECAICYSVLSVERTLPNKRCGTCR---HKFHASCLYKWFKSSNSSR 1599
Query: 119 CEICQ 123
C +C+
Sbjct: 1600 CPLCR 1604
>sp|Q04781|LTN1_YEAST E3 ubiquitin-protein ligase listerin OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RKR1 PE=1 SV=1
Length = 1562
Score = 35.8 bits (81), Expect = 0.30, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 72 SSHEQCRVCQQDKEEVLIDLGCQ-CRGGLAKAHRSCINTWFRTKGSNKCEICQ 123
S E+C +C V L + C K H +C+ WFR+ G+N C +C+
Sbjct: 1503 SGFEECAICYSILHAVDRKLPSKTCPTCKNKFHGACLYKWFRSSGNNTCPLCR 1555
>sp|Q5XI50|MARH7_RAT E3 ubiquitin-protein ligase MARCH7 OS=Rattus norvegicus GN=March7
PE=2 SV=1
Length = 692
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 12/59 (20%)
Query: 77 CRVCQQ---DKEEVLIDLGCQCRGGLAKAHRSCINTWFRTK---GSN-----KCEICQQ 124
CR+CQ +LI+ C+C G L H+ C+ W + K GS+ CE+C++
Sbjct: 553 CRICQMAAASSSNLLIE-PCKCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTCELCKE 610
>sp|Q9WV66|MARH7_MOUSE E3 ubiquitin-protein ligase MARCH7 OS=Mus musculus GN=March7 PE=2
SV=1
Length = 693
Score = 35.0 bits (79), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 12/59 (20%)
Query: 77 CRVCQQ---DKEEVLIDLGCQCRGGLAKAHRSCINTWFRTK---GSN-----KCEICQQ 124
CR+CQ +LI+ C+C G L H+ C+ W + K GS+ CE+C++
Sbjct: 554 CRICQMAAASSSNLLIE-PCKCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTCELCKE 611
>sp|Q5R9W2|MARH7_PONAB E3 ubiquitin-protein ligase MARCH7 OS=Pongo abelii GN=MARCH7 PE=2
SV=1
Length = 707
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 12/59 (20%)
Query: 77 CRVCQQ---DKEEVLIDLGCQCRGGLAKAHRSCINTWFRTK---GSN-----KCEICQQ 124
CR+CQ +LI+ C+C G L H+ C+ W + K GS+ CE+C++
Sbjct: 552 CRICQMAAASSSNLLIE-PCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCELCKE 609
>sp|Q9H992|MARH7_HUMAN E3 ubiquitin-protein ligase MARCH7 OS=Homo sapiens GN=MARCH7 PE=1
SV=1
Length = 704
Score = 35.0 bits (79), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 12/59 (20%)
Query: 77 CRVCQQ---DKEEVLIDLGCQCRGGLAKAHRSCINTWFRTK---GSN-----KCEICQQ 124
CR+CQ +LI+ C+C G L H+ C+ W + K GS+ CE+C++
Sbjct: 552 CRICQMAAASSSNLLIE-PCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCELCKE 609
>sp|O60103|DOA10_SCHPO ERAD-associated E3 ubiquitin-protein ligase doa10
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=doa10 PE=1 SV=1
Length = 1242
Score = 35.0 bits (79), Expect = 0.52, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 75 EQCRVCQ-QDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQ-QVAVNVPTP 132
E CRVC+ + + + C+C G + H+ C+ W CE+C+ +
Sbjct: 6 EICRVCRCEGAPDSPLFHPCKCTGSIRYVHQECLVEWLGHSKKTHCELCKAKFEFTKVYS 65
Query: 133 ESQPST 138
ES P T
Sbjct: 66 ESMPRT 71
>sp|Q5R9W1|MARH6_PONAB E3 ubiquitin-protein ligase MARCH6 OS=Pongo abelii GN=MARCH6 PE=2
SV=1
Length = 910
Score = 34.7 bits (78), Expect = 0.57, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 77 CRVCQQD-KEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQ 124
CRVC+ + E + C C G + H+ C+ W + CE+C+
Sbjct: 9 CRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKH 57
>sp|Q6ZQ89|MARH6_MOUSE E3 ubiquitin-protein ligase MARCH6 OS=Mus musculus GN=March6 PE=2
SV=2
Length = 909
Score = 34.7 bits (78), Expect = 0.57, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 77 CRVCQQD-KEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQ 124
CRVC+ + E + C C G + H+ C+ W + CE+C+
Sbjct: 9 CRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKH 57
>sp|O60337|MARH6_HUMAN E3 ubiquitin-protein ligase MARCH6 OS=Homo sapiens GN=MARCH6 PE=1
SV=2
Length = 910
Score = 34.7 bits (78), Expect = 0.57, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 77 CRVCQQD-KEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQ 124
CRVC+ + E + C C G + H+ C+ W + CE+C+
Sbjct: 9 CRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKH 57
>sp|Q555H8|LTN1_DICDI E3 ubiquitin-protein ligase listerin OS=Dictyostelium discoideum
GN=rnf160 PE=3 SV=1
Length = 1864
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 94 QCRGGLAKAHRSCINTWFRTKGSNKCEICQ 123
QC+ K H CI WF+T + C +CQ
Sbjct: 1831 QCKTCKNKFHAGCIYKWFQTSHKSNCPLCQ 1860
>sp|P58873|RHBL3_MOUSE Rhomboid-related protein 3 OS=Mus musculus GN=Rhbdl3 PE=2 SV=1
Length = 404
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 53 KSNSSKGEPPKKDILSRTASSHEQCRVCQQD 83
+S+SSK +P KK++L A SH ++C QD
Sbjct: 64 ESHSSKLDPHKKEVLLALADSHADGQICYQD 94
>sp|O41933|MIR1_MHV68 E3 ubiquitin-protein ligase MIR1 OS=Murid herpesvirus 4 GN=K3 PE=1
SV=1
Length = 201
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 72 SSHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEIC 122
S+ E C +C Q E + C C+G A +H+ C+ W T C +C
Sbjct: 3 STGEFCWICHQP--EGPLKRFCGCKGSCAVSHQDCLRGWLETSRRQTCALC 51
>sp|Q9LZJ6|ATL5_ARATH RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2
SV=1
Length = 257
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 72 SSHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAVNVPT 131
S E+C VC + EE D G H CI+TWFR++ S C +C+ P
Sbjct: 108 SPLEECSVCLSEFEE--DDEGRVLPKCGHVFHVDCIDTWFRSRSS--CPLCR-----APV 158
Query: 132 PESQPST 138
+QP T
Sbjct: 159 QPAQPVT 165
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,177,059
Number of Sequences: 539616
Number of extensions: 3839363
Number of successful extensions: 12267
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 12053
Number of HSP's gapped (non-prelim): 256
length of query: 237
length of database: 191,569,459
effective HSP length: 114
effective length of query: 123
effective length of database: 130,053,235
effective search space: 15996547905
effective search space used: 15996547905
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)