Query 045467
Match_columns 237
No_of_seqs 179 out of 672
Neff 4.8
Searched_HMMs 29240
Date Tue Mar 26 00:00:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045467.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045467hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyx_A ORF K3, K3RING; zinc-bi 99.7 5.3E-19 1.8E-23 125.8 3.6 56 72-128 4-59 (60)
2 2d8s_A Cellular modulator of i 99.7 9.6E-17 3.3E-21 120.0 6.2 60 69-128 10-70 (80)
3 1v87_A Deltex protein 2; ring- 98.0 4.7E-06 1.6E-10 63.7 4.9 53 73-130 24-96 (114)
4 2ep4_A Ring finger protein 24; 98.0 8.3E-06 2.9E-10 57.7 5.7 52 72-130 13-66 (74)
5 2kiz_A E3 ubiquitin-protein li 98.0 7.3E-06 2.5E-10 57.2 5.2 51 72-129 12-64 (69)
6 2ecm_A Ring finger and CHY zin 98.0 3.5E-06 1.2E-10 56.2 3.1 49 72-127 3-54 (55)
7 2l0b_A E3 ubiquitin-protein li 97.9 2.6E-06 8.8E-11 63.5 1.8 49 72-127 38-88 (91)
8 2ect_A Ring finger protein 126 97.9 7.9E-06 2.7E-10 58.3 3.8 50 72-128 13-64 (78)
9 2ecl_A Ring-box protein 2; RNF 97.9 8.9E-06 3E-10 59.5 4.0 50 71-127 12-75 (81)
10 2ea6_A Ring finger protein 4; 97.9 7.6E-06 2.6E-10 56.5 3.3 50 71-127 12-67 (69)
11 1x4j_A Ring finger protein 38; 97.8 9.2E-06 3.1E-10 57.8 2.7 49 72-127 21-71 (75)
12 1chc_A Equine herpes virus-1 r 97.8 1.6E-05 5.3E-10 55.2 3.5 51 72-129 3-53 (68)
13 1iym_A EL5; ring-H2 finger, ub 97.7 1E-05 3.5E-10 54.0 1.8 47 73-126 4-53 (55)
14 3ng2_A RNF4, snurf, ring finge 97.7 1.5E-05 5.3E-10 55.5 2.2 51 70-127 6-62 (71)
15 3dpl_R Ring-box protein 1; ubi 97.7 3E-05 1E-09 60.3 3.8 49 72-127 35-100 (106)
16 2ct2_A Tripartite motif protei 97.6 6E-05 2.1E-09 54.4 5.1 52 72-128 13-68 (88)
17 2ct0_A Non-SMC element 1 homol 97.6 5.3E-05 1.8E-09 55.7 4.7 51 73-128 14-64 (74)
18 2ecn_A Ring finger protein 141 97.6 2.4E-05 8.2E-10 54.7 2.5 48 72-128 13-60 (70)
19 2yur_A Retinoblastoma-binding 97.6 5.6E-05 1.9E-09 53.8 4.0 48 73-126 14-62 (74)
20 2d8t_A Dactylidin, ring finger 97.5 4.4E-05 1.5E-09 53.8 2.9 48 72-127 13-60 (71)
21 2xeu_A Ring finger protein 4; 97.5 3.3E-05 1.1E-09 52.4 2.1 48 73-127 2-55 (64)
22 2djb_A Polycomb group ring fin 97.5 7.9E-05 2.7E-09 52.6 3.9 49 73-128 14-62 (72)
23 2ecy_A TNF receptor-associated 97.5 8.1E-05 2.8E-09 51.6 3.4 49 72-127 13-61 (66)
24 2ysl_A Tripartite motif-contai 97.4 0.0001 3.5E-09 51.6 3.8 50 72-127 18-68 (73)
25 2ecw_A Tripartite motif-contai 97.4 0.00025 8.5E-09 50.4 5.7 50 72-127 17-70 (85)
26 2ecv_A Tripartite motif-contai 97.4 0.00033 1.1E-08 49.8 6.3 50 72-127 17-70 (85)
27 2csy_A Zinc finger protein 183 97.4 0.00027 9.3E-09 50.8 5.4 47 73-127 14-60 (81)
28 2ecj_A Tripartite motif-contai 97.3 0.0002 7E-09 47.8 4.2 45 72-122 13-58 (58)
29 2ysj_A Tripartite motif-contai 97.2 0.00041 1.4E-08 47.4 4.9 45 72-122 18-63 (63)
30 3ztg_A E3 ubiquitin-protein li 97.2 0.00035 1.2E-08 51.1 4.3 50 72-127 11-61 (92)
31 2y43_A E3 ubiquitin-protein li 97.2 7.8E-05 2.7E-09 55.6 0.7 49 73-128 21-69 (99)
32 4a0k_B E3 ubiquitin-protein li 97.1 8.1E-05 2.8E-09 59.1 0.6 49 72-127 46-111 (117)
33 3lrq_A E3 ubiquitin-protein li 97.1 0.0003 1E-08 53.0 3.1 49 73-127 21-69 (100)
34 2egp_A Tripartite motif-contai 96.9 0.00022 7.5E-09 50.5 1.3 50 72-127 10-64 (79)
35 1g25_A CDK-activating kinase a 96.9 0.00037 1.3E-08 48.0 2.4 49 73-127 2-54 (65)
36 2ckl_B Ubiquitin ligase protei 96.9 0.0005 1.7E-08 55.8 3.2 49 73-127 53-101 (165)
37 3fl2_A E3 ubiquitin-protein li 96.7 0.0012 4.2E-08 51.0 4.1 49 73-128 51-99 (124)
38 1t1h_A Gspef-atpub14, armadill 96.7 0.001 3.5E-08 47.1 3.3 48 73-127 7-54 (78)
39 2ckl_A Polycomb group ring fin 96.7 0.00066 2.3E-08 51.4 2.3 49 73-128 14-62 (108)
40 4ap4_A E3 ubiquitin ligase RNF 96.6 0.00059 2E-08 52.1 1.5 50 72-128 5-60 (133)
41 1jm7_A BRCA1, breast cancer ty 96.5 0.0013 4.6E-08 49.3 2.9 48 74-127 21-69 (112)
42 4ayc_A E3 ubiquitin-protein li 96.5 0.00088 3E-08 53.1 1.9 45 75-127 54-98 (138)
43 1e4u_A Transcriptional repress 96.5 0.0038 1.3E-07 45.6 4.9 54 72-129 9-63 (78)
44 4ap4_A E3 ubiquitin ligase RNF 96.1 0.0022 7.6E-08 48.9 2.0 50 71-127 69-124 (133)
45 3hct_A TNF receptor-associated 96.0 0.0048 1.6E-07 47.4 3.8 50 72-128 16-65 (118)
46 1z6u_A NP95-like ring finger p 96.0 0.0036 1.2E-07 50.7 3.0 48 74-128 78-125 (150)
47 2y1n_A E3 ubiquitin-protein li 96.0 0.0047 1.6E-07 58.0 4.1 51 72-129 330-380 (389)
48 1rmd_A RAG1; V(D)J recombinati 95.8 0.0052 1.8E-07 46.8 3.1 48 74-128 23-70 (116)
49 3k1l_B Fancl; UBC, ring, RWD, 95.7 0.0054 1.8E-07 57.4 3.3 56 72-127 306-372 (381)
50 3l11_A E3 ubiquitin-protein li 95.4 0.0017 5.8E-08 49.5 -1.2 49 73-128 14-62 (115)
51 3nw0_A Non-structural maintena 95.3 0.011 3.7E-07 51.8 3.7 51 73-129 179-230 (238)
52 1jm7_B BARD1, BRCA1-associated 94.9 0.0043 1.5E-07 47.6 -0.0 46 72-126 20-65 (117)
53 2vje_A E3 ubiquitin-protein li 94.8 0.013 4.4E-07 40.8 2.2 50 72-128 6-57 (64)
54 2vje_B MDM4 protein; proto-onc 94.5 0.017 5.8E-07 40.0 2.1 49 73-128 6-56 (63)
55 4ic3_A E3 ubiquitin-protein li 94.2 0.012 4.2E-07 41.8 1.0 44 73-128 23-67 (74)
56 2c2l_A CHIP, carboxy terminus 93.6 0.038 1.3E-06 46.9 3.0 48 73-127 207-254 (281)
57 3knv_A TNF receptor-associated 93.1 0.026 8.8E-07 45.2 1.1 49 71-126 28-76 (141)
58 3hcs_A TNF receptor-associated 92.9 0.072 2.5E-06 43.0 3.5 51 71-128 15-65 (170)
59 2kr4_A Ubiquitin conjugation f 92.9 0.15 5.1E-06 37.2 4.9 47 73-127 13-59 (85)
60 2ea5_A Cell growth regulator w 92.5 0.13 4.5E-06 36.1 4.0 46 72-129 13-59 (68)
61 2kre_A Ubiquitin conjugation f 92.1 0.2 7E-06 37.8 4.9 47 73-127 28-74 (100)
62 1bor_A Transcription factor PM 91.6 0.049 1.7E-06 36.6 0.8 45 73-128 5-49 (56)
63 2f42_A STIP1 homology and U-bo 91.5 0.12 4.1E-06 43.5 3.4 48 73-127 105-152 (179)
64 1wim_A KIAA0161 protein; ring 91.3 0.15 5.1E-06 37.4 3.3 50 72-126 3-62 (94)
65 2ecg_A Baculoviral IAP repeat- 91.1 0.11 3.9E-06 36.6 2.4 43 74-128 25-68 (75)
66 1wgm_A Ubiquitin conjugation f 89.1 0.43 1.5E-05 35.8 4.3 48 73-127 21-68 (98)
67 2yu4_A E3 SUMO-protein ligase 88.3 0.47 1.6E-05 35.0 3.9 48 72-125 5-59 (94)
68 3t6p_A Baculoviral IAP repeat- 86.9 0.14 4.6E-06 47.1 0.3 44 73-128 294-338 (345)
69 3htk_C E3 SUMO-protein ligase 85.7 0.56 1.9E-05 42.0 3.6 52 71-127 178-231 (267)
70 2yho_A E3 ubiquitin-protein li 82.2 0.4 1.4E-05 34.5 1.0 44 73-128 17-61 (79)
71 2bay_A PRE-mRNA splicing facto 81.3 0.88 3E-05 31.3 2.4 45 75-127 4-49 (61)
72 2lri_C Autoimmune regulator; Z 68.8 1.7 5.7E-05 30.7 1.2 47 73-125 11-59 (66)
73 1weo_A Cellulose synthase, cat 67.1 12 0.00041 28.5 5.6 53 72-129 14-71 (93)
74 1weu_A Inhibitor of growth fam 54.8 7.2 0.00025 29.3 2.5 48 72-125 34-85 (91)
75 2l43_A N-teminal domain from h 49.7 4.5 0.00015 29.9 0.6 51 72-125 23-75 (88)
76 1f62_A Transcription factor WS 49.1 3.5 0.00012 26.9 -0.0 47 75-124 1-49 (51)
77 2ku3_A Bromodomain-containing 49.0 3.1 0.00011 29.7 -0.4 50 72-124 14-65 (71)
78 2ysm_A Myeloid/lymphoid or mix 48.0 2.9 0.0001 31.5 -0.6 40 70-112 3-42 (111)
79 2ko5_A Ring finger protein Z; 48.0 9.3 0.00032 29.4 2.2 46 73-127 27-72 (99)
80 1q90_G Cytochrome B6F complex 46.1 17 0.0006 23.2 2.9 27 187-213 4-30 (37)
81 2kr6_A Presenilin-1; protease, 40.2 30 0.001 29.1 4.3 17 185-201 141-157 (176)
82 2k16_A Transcription initiatio 39.9 5 0.00017 28.2 -0.5 52 72-126 16-69 (75)
83 2l5u_A Chromodomain-helicase-D 35.8 9.4 0.00032 26.1 0.4 48 72-125 9-58 (61)
84 1vf5_G Protein PET G; photosyn 35.2 16 0.00055 23.4 1.4 26 187-212 4-29 (37)
85 2e6r_A Jumonji/ARID domain-con 33.6 4.9 0.00017 29.9 -1.4 51 72-125 14-66 (92)
86 1fp0_A KAP-1 corepressor; PHD 28.6 15 0.00053 27.4 0.6 51 69-125 20-72 (88)
87 3v43_A Histone acetyltransfera 28.1 25 0.00085 26.6 1.7 34 73-109 4-43 (112)
88 2lbm_A Transcriptional regulat 27.9 32 0.0011 27.7 2.4 47 71-123 60-115 (142)
89 3u5n_A E3 ubiquitin-protein li 25.5 7.9 0.00027 32.3 -1.7 47 73-125 6-54 (207)
90 2vpb_A Hpygo1, pygopus homolog 25.4 26 0.00088 24.4 1.3 33 71-107 5-40 (65)
91 1v54_I STA, cytochrome C oxida 24.3 95 0.0033 22.4 4.2 20 207-226 45-64 (73)
92 2kwj_A Zinc finger protein DPF 24.1 17 0.00057 27.7 0.1 33 75-110 2-41 (114)
93 3vk6_A E3 ubiquitin-protein li 24.0 53 0.0018 25.2 2.9 34 91-130 18-51 (101)
94 1znf_A 31ST zinc finger from X 22.5 29 0.00098 17.5 0.8 11 118-128 3-13 (27)
95 1ard_A Yeast transcription fac 20.9 31 0.0011 17.5 0.8 12 117-128 3-14 (29)
96 3o36_A Transcription intermedi 20.3 12 0.00041 30.5 -1.6 47 73-125 3-51 (184)
97 1mm2_A MI2-beta; PHD, zinc fin 20.2 11 0.00039 25.7 -1.5 47 72-124 7-55 (61)
98 2kvh_A Zinc finger and BTB dom 20.1 30 0.001 17.6 0.6 12 117-128 4-15 (27)
99 1xwh_A Autoimmune regulator; P 20.1 11 0.00038 26.0 -1.6 47 72-124 6-54 (66)
100 1wev_A Riken cDNA 1110020M19; 20.0 10 0.00034 27.9 -1.9 51 74-127 16-74 (88)
101 2lvu_A Zinc finger and BTB dom 24.6 23 0.0008 17.9 0.0 13 117-129 3-15 (26)
No 1
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.74 E-value=5.3e-19 Score=125.82 Aligned_cols=56 Identities=29% Similarity=0.698 Sum_probs=50.1
Q ss_pred CCCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHhcCCcccccCcccccc
Q 045467 72 SSHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAVN 128 (237)
Q Consensus 72 s~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~~ 128 (237)
+++++||||+++.++ .+++||+|+|+++++|+.||++|++++++.+||+|++.|..
T Consensus 4 ~~~~~CrIC~~~~~~-~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELGN-ERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECSC-CCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCCC-ceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 567899999987544 46799999999999999999999999999999999999853
No 2
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=9.6e-17 Score=120.00 Aligned_cols=60 Identities=28% Similarity=0.757 Sum_probs=52.5
Q ss_pred cCCCCCCceeEeccCCC-ccceeccccccCCCccccHHHHHHHHHhcCCcccccCcccccc
Q 045467 69 RTASSHEQCRVCQQDKE-EVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAVN 128 (237)
Q Consensus 69 ~~~s~~~~CRIC~~~~~-~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~~ 128 (237)
..++++..||||+++.+ ++.+++||+|+|+++++|+.||++|+..+++.+|++|++.|..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 10 ITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CCCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 34567789999998763 4567899999999999999999999999998999999999864
No 3
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.03 E-value=4.7e-06 Score=63.66 Aligned_cols=53 Identities=19% Similarity=0.419 Sum_probs=40.4
Q ss_pred CCCceeEeccCCCccc-----------------eeccccccCCCccccHHHHHHHHHh---cCCcccccCcccccccc
Q 045467 73 SHEQCRVCQQDKEEVL-----------------IDLGCQCRGGLAKAHRSCINTWFRT---KGSNKCEICQQVAVNVP 130 (237)
Q Consensus 73 ~~~~CRIC~~~~~~~~-----------------l~~PC~CkGsl~~vH~~CL~~Wl~~---s~~~~CEiCk~~~~~v~ 130 (237)
....|-||++...+.. ...||. +..|..||.+|+.. +...+|++|+..|....
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS-----HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSC-----CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCC-----CcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence 3468999998863311 157887 68999999999976 45679999999986554
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=8.3e-06 Score=57.67 Aligned_cols=52 Identities=27% Similarity=0.653 Sum_probs=40.2
Q ss_pred CCCCceeEeccCCCc--cceeccccccCCCccccHHHHHHHHHhcCCcccccCcccccccc
Q 045467 72 SSHEQCRVCQQDKEE--VLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAVNVP 130 (237)
Q Consensus 72 s~~~~CRIC~~~~~~--~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~~v~ 130 (237)
.....|.||++.... ....+||. +.+|..|+.+|++.+. .|++|++.+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~-----H~f~~~Ci~~~~~~~~--~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCK-----HAFHRKCLIKWLEVRK--VCPLCNMPVLQLA 66 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTT-----EEEEHHHHHHHHHHCS--BCTTTCCBCSSCC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCC-----CEecHHHHHHHHHcCC--cCCCcCccccccc
Confidence 346789999998643 33445886 5799999999998754 8999999886553
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.01 E-value=7.3e-06 Score=57.23 Aligned_cols=51 Identities=29% Similarity=0.646 Sum_probs=40.0
Q ss_pred CCCCceeEeccCCC--ccceeccccccCCCccccHHHHHHHHHhcCCcccccCccccccc
Q 045467 72 SSHEQCRVCQQDKE--EVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAVNV 129 (237)
Q Consensus 72 s~~~~CRIC~~~~~--~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~~v 129 (237)
.....|.||++... +....+||. +.+|..|+.+|+..+. +|++|+..+...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCM-----HLFHQVCVDQWLITNK--KCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTS-----CEEEHHHHHHHHHHCS--BCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCC-----CHHHHHHHHHHHHcCC--CCcCcCccccCc
Confidence 35578999988764 345668986 6799999999998854 699999887544
No 6
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.99 E-value=3.5e-06 Score=56.16 Aligned_cols=49 Identities=24% Similarity=0.586 Sum_probs=39.4
Q ss_pred CCCCceeEeccCCCc---cceeccccccCCCccccHHHHHHHHHhcCCcccccCccccc
Q 045467 72 SSHEQCRVCQQDKEE---VLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAV 127 (237)
Q Consensus 72 s~~~~CRIC~~~~~~---~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~ 127 (237)
++...|.||++...+ .....||. +.+|..|+.+|++.+ ..|++|+..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCG-----HLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTS-----CEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCC-----CcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 456889999988532 45678986 679999999999987 68999998753
No 7
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.94 E-value=2.6e-06 Score=63.47 Aligned_cols=49 Identities=20% Similarity=0.669 Sum_probs=38.1
Q ss_pred CCCCceeEeccCCCc--cceeccccccCCCccccHHHHHHHHHhcCCcccccCccccc
Q 045467 72 SSHEQCRVCQQDKEE--VLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAV 127 (237)
Q Consensus 72 s~~~~CRIC~~~~~~--~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~ 127 (237)
.+...|.||++.... ....+||. +.+|..|+.+|++.+ ..|++|++.+.
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~-----H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCH-----HYFHKPCVSIWLQKS--GTCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTT-----EEEEHHHHHHHHTTT--CBCTTTCCBSS
T ss_pred CCCCCCcccChhhcCCCcEEecCCC-----ChHHHHHHHHHHHcC--CcCcCcCccCC
Confidence 355789999987643 34567887 689999999999764 48999998763
No 8
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.90 E-value=7.9e-06 Score=58.35 Aligned_cols=50 Identities=28% Similarity=0.699 Sum_probs=39.2
Q ss_pred CCCCceeEeccCCCc--cceeccccccCCCccccHHHHHHHHHhcCCcccccCcccccc
Q 045467 72 SSHEQCRVCQQDKEE--VLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAVN 128 (237)
Q Consensus 72 s~~~~CRIC~~~~~~--~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~~ 128 (237)
.+...|.||++.... ....+||. +.+|..|+.+|++.+ .+|++|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCN-----HLFHDSCIVPWLEQH--DSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTS-----CEEETTTTHHHHTTT--CSCTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCC-----CeecHHHHHHHHHcC--CcCcCcCCccCC
Confidence 456899999988643 33457887 679999999999754 589999998754
No 9
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=8.9e-06 Score=59.47 Aligned_cols=50 Identities=24% Similarity=0.742 Sum_probs=37.3
Q ss_pred CCCCCceeEeccCCCc-------------cceecc-ccccCCCccccHHHHHHHHHhcCCcccccCccccc
Q 045467 71 ASSHEQCRVCQQDKEE-------------VLIDLG-CQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAV 127 (237)
Q Consensus 71 ~s~~~~CRIC~~~~~~-------------~~l~~P-C~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~ 127 (237)
+.++..|-||++..++ .....| |. +..|..|+.+|++.+. +|++|++.+.
T Consensus 12 ~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~~~--~CP~CR~~~~ 75 (81)
T 2ecl_A 12 DVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECN-----HSFHNCCMSLWVKQNN--RCPLCQQDWV 75 (81)
T ss_dssp SCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTS-----CEEEHHHHHHHTTTCC--BCTTTCCBCC
T ss_pred cCCCCCCcccChhhhccCcccccccCCCceEEEeCCCC-----CccChHHHHHHHHhCC--CCCCcCCCcc
Confidence 3456778888877633 133444 77 6899999999998764 8999998864
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=7.6e-06 Score=56.51 Aligned_cols=50 Identities=18% Similarity=0.543 Sum_probs=39.1
Q ss_pred CCCCCceeEeccCCCcc------ceeccccccCCCccccHHHHHHHHHhcCCcccccCccccc
Q 045467 71 ASSHEQCRVCQQDKEEV------LIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAV 127 (237)
Q Consensus 71 ~s~~~~CRIC~~~~~~~------~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~ 127 (237)
..+...|-||++...+. ....||. +.+|..|+.+|+.. +..|++|+..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSS-----CEEEHHHHHHHHHH--CSSCTTTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCC-----ChhcHHHHHHHHHc--CCCCCCCCCccC
Confidence 34568899999876432 2568887 68999999999987 458999998764
No 11
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.80 E-value=9.2e-06 Score=57.83 Aligned_cols=49 Identities=31% Similarity=0.729 Sum_probs=38.6
Q ss_pred CCCCceeEeccCCCc--cceeccccccCCCccccHHHHHHHHHhcCCcccccCccccc
Q 045467 72 SSHEQCRVCQQDKEE--VLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAV 127 (237)
Q Consensus 72 s~~~~CRIC~~~~~~--~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~ 127 (237)
.+...|.||++.... ....+||. +..|..|+.+|++.+ ..|++|++.+.
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~~--~~CP~Cr~~~~ 71 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCN-----HEFHAKCVDKWLKAN--RTCPICRADSG 71 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTT-----EEEETTHHHHHHHHC--SSCTTTCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCC-----CHhHHHHHHHHHHcC--CcCcCcCCcCC
Confidence 456789999988644 33567887 679999999999875 48999998763
No 12
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.78 E-value=1.6e-05 Score=55.25 Aligned_cols=51 Identities=25% Similarity=0.658 Sum_probs=41.1
Q ss_pred CCCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHhcCCcccccCccccccc
Q 045467 72 SSHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAVNV 129 (237)
Q Consensus 72 s~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~~v 129 (237)
.+...|.||++...+.....||. +..|..|+.+|++.+ ..|++|+..+..+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCL-----HAFCYVCITRWIRQN--PTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTT-----EEESTTHHHHHHHHS--CSTTTTCCCCCCE
T ss_pred CCCCCCeeCCccccCCcEecCCC-----CeeHHHHHHHHHhCc--CcCcCCChhhHhh
Confidence 34678999999877655678987 579999999999865 4899999887543
No 13
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.73 E-value=1e-05 Score=53.97 Aligned_cols=47 Identities=23% Similarity=0.661 Sum_probs=36.5
Q ss_pred CCCceeEeccCCCc--cceecc-ccccCCCccccHHHHHHHHHhcCCcccccCcccc
Q 045467 73 SHEQCRVCQQDKEE--VLIDLG-CQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVA 126 (237)
Q Consensus 73 ~~~~CRIC~~~~~~--~~l~~P-C~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~ 126 (237)
+...|-||++...+ .....| |. +..|..|+.+|++. +.+|++|++.+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~-----H~f~~~Ci~~w~~~--~~~CP~Cr~~~ 53 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCG-----HGFHAECVDMWLGS--HSTCPLCRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSC-----CEECTTHHHHTTTT--CCSCSSSCCCS
T ss_pred CCCcCccCCccccCCCceEECCCCC-----CcccHHHHHHHHHc--CCcCcCCCCEe
Confidence 45789999988643 345566 76 57999999999976 45799999875
No 14
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.68 E-value=1.5e-05 Score=55.48 Aligned_cols=51 Identities=18% Similarity=0.521 Sum_probs=40.0
Q ss_pred CCCCCCceeEeccCCCcc------ceeccccccCCCccccHHHHHHHHHhcCCcccccCccccc
Q 045467 70 TASSHEQCRVCQQDKEEV------LIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAV 127 (237)
Q Consensus 70 ~~s~~~~CRIC~~~~~~~------~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~ 127 (237)
..++...|-||++...+. ....||. +..|..|+.+|++.+ ..|++|+..+.
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 62 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKIN 62 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTS-----CEEEHHHHHHHHHHC--SBCTTTCCBCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCC-----ChHhHHHHHHHHHcC--CCCCCCCCccC
Confidence 345678899999875332 2568987 679999999999876 48999998874
No 15
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.66 E-value=3e-05 Score=60.27 Aligned_cols=49 Identities=18% Similarity=0.466 Sum_probs=37.8
Q ss_pred CCCCceeEeccCCCcc-----------------ceeccccccCCCccccHHHHHHHHHhcCCcccccCccccc
Q 045467 72 SSHEQCRVCQQDKEEV-----------------LIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAV 127 (237)
Q Consensus 72 s~~~~CRIC~~~~~~~-----------------~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~ 127 (237)
.+...|-||++..++. ....||. +..|..|+.+|+.. +.+|++|+..|.
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKT--RQVCPLDNREWE 100 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTS-----CEEEHHHHHHHHTT--CSBCSSSCSBCC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccC-----cEECHHHHHHHHHc--CCcCcCCCCcce
Confidence 4567899998775431 3457887 78999999999987 458999999864
No 16
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.65 E-value=6e-05 Score=54.40 Aligned_cols=52 Identities=17% Similarity=0.458 Sum_probs=41.1
Q ss_pred CCCCceeEeccCCCc---cceeccccccCCCccccHHHHHHHHHhc-CCcccccCcccccc
Q 045467 72 SSHEQCRVCQQDKEE---VLIDLGCQCRGGLAKAHRSCINTWFRTK-GSNKCEICQQVAVN 128 (237)
Q Consensus 72 s~~~~CRIC~~~~~~---~~l~~PC~CkGsl~~vH~~CL~~Wl~~s-~~~~CEiCk~~~~~ 128 (237)
.+...|.||++...+ .+..+||. +.+|..|+.+|++.+ +...|++|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCG-----HTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSS-----CEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred cCCCCCccCCccccccCCCeEECCCC-----ChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 356789999988654 25667886 689999999999986 45799999988643
No 17
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.64 E-value=5.3e-05 Score=55.73 Aligned_cols=51 Identities=16% Similarity=0.441 Sum_probs=38.5
Q ss_pred CCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHhcCCcccccCcccccc
Q 045467 73 SHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAVN 128 (237)
Q Consensus 73 ~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~~ 128 (237)
....|-||++.......-. .| -.-.|..|+.+||+.+++.+|++|++.+..
T Consensus 14 ~i~~C~IC~~~i~~g~~C~--~C---~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCE--TC---GIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSCBCSSSCCBCSSSEECS--SS---CCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCcCcchhhHcccCCccC--CC---CchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 4478999988875432212 33 256899999999999888899999988753
No 18
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.62 E-value=2.4e-05 Score=54.69 Aligned_cols=48 Identities=23% Similarity=0.697 Sum_probs=39.6
Q ss_pred CCCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHhcCCcccccCcccccc
Q 045467 72 SSHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAVN 128 (237)
Q Consensus 72 s~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~~ 128 (237)
.+...|.||++...+ ..+||. +.+|..|+.+|+. ....|++|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~--~~~~Cg-----H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 13 TDEEECCICMDGRAD--LILPCA-----HSFCQKCIDKWSD--RHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCSSSCCSCCS--EEETTT-----EEECHHHHHHSSC--CCSSCHHHHHCTTC
T ss_pred CCCCCCeeCCcCccC--cccCCC-----CcccHHHHHHHHH--CcCcCCCcCCcccC
Confidence 456789999998766 668987 5799999999998 46689999988754
No 19
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.57 E-value=5.6e-05 Score=53.85 Aligned_cols=48 Identities=19% Similarity=0.463 Sum_probs=39.7
Q ss_pred CCCceeEeccCCCccceecc-ccccCCCccccHHHHHHHHHhcCCcccccCcccc
Q 045467 73 SHEQCRVCQQDKEEVLIDLG-CQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVA 126 (237)
Q Consensus 73 ~~~~CRIC~~~~~~~~l~~P-C~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~ 126 (237)
+...|.||++...+ +..+| |. +..|+.|+.+|+..++...|++|+..+
T Consensus 14 ~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 14 DELLCLICKDIMTD-AVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp GGGSCSSSCCCCTT-CEECSSSC-----CEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred CCCCCcCCChHHhC-CeEcCCCC-----CHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 45789999887765 45578 86 678999999999998878999999865
No 20
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.53 E-value=4.4e-05 Score=53.77 Aligned_cols=48 Identities=19% Similarity=0.421 Sum_probs=38.6
Q ss_pred CCCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHhcCCcccccCccccc
Q 045467 72 SSHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAV 127 (237)
Q Consensus 72 s~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~ 127 (237)
.+...|.||++...+ ....||. +..|..|+.+|+..+ ..|++|+..+.
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~ 60 (71)
T 2d8t_A 13 LTVPECAICLQTCVH-PVSLPCK-----HVFCYLCVKGASWLG--KRCALCRQEIP 60 (71)
T ss_dssp SSCCBCSSSSSBCSS-EEEETTT-----EEEEHHHHHHCTTCS--SBCSSSCCBCC
T ss_pred CCCCCCccCCcccCC-CEEccCC-----CHHHHHHHHHHHHCC--CcCcCcCchhC
Confidence 456789999987655 3556887 679999999999764 68999999875
No 21
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.52 E-value=3.3e-05 Score=52.44 Aligned_cols=48 Identities=17% Similarity=0.546 Sum_probs=37.9
Q ss_pred CCCceeEeccCCCcc------ceeccccccCCCccccHHHHHHHHHhcCCcccccCccccc
Q 045467 73 SHEQCRVCQQDKEEV------LIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAV 127 (237)
Q Consensus 73 ~~~~CRIC~~~~~~~------~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~ 127 (237)
+...|.||++...+. ....||. +..|..|+.+|++. +..|++|+..+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCC-----CchhHHHHHHHHHc--CCCCCCCCccCC
Confidence 457899999876432 2567887 67999999999987 458999998864
No 22
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.50 E-value=7.9e-05 Score=52.59 Aligned_cols=49 Identities=24% Similarity=0.436 Sum_probs=39.0
Q ss_pred CCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHhcCCcccccCcccccc
Q 045467 73 SHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAVN 128 (237)
Q Consensus 73 ~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~~ 128 (237)
+...|.||++...+.....||. +..|..|+.+|++. ...|++|+..+..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITECL-----HTFCKSCIVRHFYY--SNRCPKCNIVVHQ 62 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSSC-----CEECHHHHHHHHHH--CSSCTTTCCCCCS
T ss_pred CCCCCCCCChHHHCcCEECCCC-----CHHHHHHHHHHHHc--CCcCCCcCcccCc
Confidence 4578999988876644445987 67899999999977 4589999998754
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.46 E-value=8.1e-05 Score=51.58 Aligned_cols=49 Identities=22% Similarity=0.466 Sum_probs=38.0
Q ss_pred CCCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHhcCCcccccCccccc
Q 045467 72 SSHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAV 127 (237)
Q Consensus 72 s~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~ 127 (237)
.+...|.||++...+. ..+||. +..|..|+.+|++ +++..|++|+..+.
T Consensus 13 ~~~~~C~IC~~~~~~p-~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP-KQTECG-----HRFCESCMAALLS-SSSPKCTACQESIV 61 (66)
T ss_dssp CCCEECTTTCCEESSC-CCCSSS-----CCCCHHHHHHHHT-TSSCCCTTTCCCCC
T ss_pred CcCCCCCCCChHhcCe-eECCCC-----CHHHHHHHHHHHH-hCcCCCCCCCcCCC
Confidence 3457899998876543 346887 5789999999997 45668999998764
No 24
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.44 E-value=0.0001 Score=51.58 Aligned_cols=50 Identities=20% Similarity=0.427 Sum_probs=39.4
Q ss_pred CCCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHh-cCCcccccCccccc
Q 045467 72 SSHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRT-KGSNKCEICQQVAV 127 (237)
Q Consensus 72 s~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~-s~~~~CEiCk~~~~ 127 (237)
.+...|.||++...+ +...||. +.+|..|+.+|++. ++...|++|+..+.
T Consensus 18 ~~~~~C~IC~~~~~~-~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 18 QEEVICPICLDILQK-PVTIDCG-----HNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCBCTTTCSBCSS-EEECTTC-----CEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred ccCCEeccCCcccCC-eEEcCCC-----ChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 456799999987765 4446886 67999999999985 35678999998864
No 25
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.42 E-value=0.00025 Score=50.41 Aligned_cols=50 Identities=20% Similarity=0.559 Sum_probs=40.0
Q ss_pred CCCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHhc----CCcccccCccccc
Q 045467 72 SSHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTK----GSNKCEICQQVAV 127 (237)
Q Consensus 72 s~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s----~~~~CEiCk~~~~ 127 (237)
.+...|.||++...+. ...||. +.+|..|+.+|+..+ +...|++|+..+.
T Consensus 17 ~~~~~C~IC~~~~~~p-~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP-VSADCN-----HSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CTTTSCTTTCSCCSSC-EECTTS-----CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred ccCCCCcCCChhhCcc-eeCCCC-----CHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 3457899998886553 457887 579999999999985 3789999998864
No 26
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.41 E-value=0.00033 Score=49.77 Aligned_cols=50 Identities=18% Similarity=0.534 Sum_probs=39.9
Q ss_pred CCCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHh----cCCcccccCccccc
Q 045467 72 SSHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRT----KGSNKCEICQQVAV 127 (237)
Q Consensus 72 s~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~----s~~~~CEiCk~~~~ 127 (237)
.+...|.||++...+. ...||. +.+|..|+.+|+.. .+...|++|+..+.
T Consensus 17 ~~~~~C~IC~~~~~~p-~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP-LSLDCG-----HSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCTTTCSCCSSC-BCCSSS-----CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred cCCCCCCCCCcccCCc-eeCCCC-----CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 3567899999887653 446887 57899999999988 35779999998875
No 27
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.36 E-value=0.00027 Score=50.77 Aligned_cols=47 Identities=26% Similarity=0.506 Sum_probs=38.1
Q ss_pred CCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHhcCCcccccCccccc
Q 045467 73 SHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAV 127 (237)
Q Consensus 73 ~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~ 127 (237)
+...|.||++...+ +..+||. +..|..|+.+|+.. ...|++|+..+.
T Consensus 14 ~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQN-PVVTKCR-----HYFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCS-EEECTTS-----CEEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcC-eeEccCC-----CHhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 45789999888755 4458987 67899999999976 458999999875
No 28
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.34 E-value=0.0002 Score=47.76 Aligned_cols=45 Identities=22% Similarity=0.688 Sum_probs=35.5
Q ss_pred CCCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHh-cCCcccccC
Q 045467 72 SSHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRT-KGSNKCEIC 122 (237)
Q Consensus 72 s~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~-s~~~~CEiC 122 (237)
.+...|.||++...+. ..+||. +..|..|+.+|+.. +++..|++|
T Consensus 13 ~~~~~C~IC~~~~~~p-~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP-VIIECG-----HNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC-CCCSSC-----CCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc-EeCCCC-----CccCHHHHHHHHHhcCCCCCCCCC
Confidence 4567899999887654 447887 57899999999875 466789988
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.23 E-value=0.00041 Score=47.42 Aligned_cols=45 Identities=22% Similarity=0.506 Sum_probs=35.6
Q ss_pred CCCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHhc-CCcccccC
Q 045467 72 SSHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTK-GSNKCEIC 122 (237)
Q Consensus 72 s~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s-~~~~CEiC 122 (237)
.+...|.||++...+ +...||. +..|+.|+.+|++.+ ++..|++|
T Consensus 18 ~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQK-PVTIDCG-----HNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSS-CEECTTS-----SEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCC-eEEeCCC-----CcchHHHHHHHHHcCCCCCcCcCC
Confidence 456889999987765 3446887 679999999999864 46689988
No 30
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.18 E-value=0.00035 Score=51.13 Aligned_cols=50 Identities=20% Similarity=0.470 Sum_probs=40.7
Q ss_pred CCCCceeEeccCCCccceecc-ccccCCCccccHHHHHHHHHhcCCcccccCccccc
Q 045467 72 SSHEQCRVCQQDKEEVLIDLG-CQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAV 127 (237)
Q Consensus 72 s~~~~CRIC~~~~~~~~l~~P-C~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~ 127 (237)
.+.-.|.||++...+ +...| |. +..++.|+.+|+..++...|++|+..+.
T Consensus 11 ~~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTD-AVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSS-CEECTTTC-----CEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcC-ceECCCCC-----CHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 345789999987664 45578 76 5689999999999888889999998863
No 31
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.17 E-value=7.8e-05 Score=55.61 Aligned_cols=49 Identities=18% Similarity=0.429 Sum_probs=38.6
Q ss_pred CCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHhcCCcccccCcccccc
Q 045467 73 SHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAVN 128 (237)
Q Consensus 73 ~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~~ 128 (237)
+...|.||++...+.....||. +..|..|+.+|+..+ ..|++|+..+..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCS-----HNYCSLCIRKFLSYK--TQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTC-----CEEEHHHHHHHHTTC--CBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCC-----CHhhHHHHHHHHHCC--CCCCCCCCcCCh
Confidence 4578999998876644434887 679999999999854 589999988743
No 32
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.14 E-value=8.1e-05 Score=59.07 Aligned_cols=49 Identities=18% Similarity=0.473 Sum_probs=1.4
Q ss_pred CCCCceeEeccCCCc-----------------cceeccccccCCCccccHHHHHHHHHhcCCcccccCccccc
Q 045467 72 SSHEQCRVCQQDKEE-----------------VLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAV 127 (237)
Q Consensus 72 s~~~~CRIC~~~~~~-----------------~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~ 127 (237)
...+.|-||++..++ ..+..||. +..|..|+.+|+..+ .+|++|+..|.
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~-----H~FH~~CI~~Wl~~~--~~CP~Cr~~~~ 111 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKTR--QVCPLDNREWE 111 (117)
T ss_dssp CCC----------------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcC-----ceEcHHHHHHHHHcC--CcCCCCCCeee
Confidence 345789999877533 12234776 689999999999884 58999998864
No 33
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.07 E-value=0.0003 Score=53.00 Aligned_cols=49 Identities=18% Similarity=0.493 Sum_probs=40.0
Q ss_pred CCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHhcCCcccccCccccc
Q 045467 73 SHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAV 127 (237)
Q Consensus 73 ~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~ 127 (237)
+...|.||++...+.....||. +..|..|+.+|+..++ ..|++|+..+.
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~Cg-----H~FC~~Ci~~~~~~~~-~~CP~Cr~~~~ 69 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCS-----KLCCFSCIRRWLTEQR-AQCPHCRAPLQ 69 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTC-----CEEEHHHHHHHHHHTC-SBCTTTCCBCC
T ss_pred CCCCCccCCccccCccccCCCC-----ChhhHHHHHHHHHHCc-CCCCCCCCcCC
Confidence 4578999998876644338997 6799999999999875 68999999874
No 34
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=96.95 E-value=0.00022 Score=50.50 Aligned_cols=50 Identities=22% Similarity=0.519 Sum_probs=39.7
Q ss_pred CCCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHhc-----CCcccccCccccc
Q 045467 72 SSHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTK-----GSNKCEICQQVAV 127 (237)
Q Consensus 72 s~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s-----~~~~CEiCk~~~~ 127 (237)
.+...|.||++...+ +...||. +..|..|+.+|+..+ +...|++|+..+.
T Consensus 10 ~~~~~C~IC~~~~~~-p~~l~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 10 QEEVTCPICLELLTE-PLSLDCG-----HSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCEETTTTEECSS-CCCCSSS-----CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred ccCCCCcCCCcccCC-eeECCCC-----CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 456889999988755 3446887 578999999999873 3679999999874
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.94 E-value=0.00037 Score=48.01 Aligned_cols=49 Identities=20% Similarity=0.481 Sum_probs=37.0
Q ss_pred CCCceeEecc-CCCcc---ceeccccccCCCccccHHHHHHHHHhcCCcccccCccccc
Q 045467 73 SHEQCRVCQQ-DKEEV---LIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAV 127 (237)
Q Consensus 73 ~~~~CRIC~~-~~~~~---~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~ 127 (237)
++..|.||++ ...+. .+..||. +.+|..|+.+|+.. +...|++|+..+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GAGNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTC-----CCEEHHHHHHHHHT-TSSSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCC-----CHhHHHHHHHHHHc-CCCcCCCCCCccc
Confidence 4568999998 33322 2457988 57899999999875 4668999998874
No 36
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=96.90 E-value=0.0005 Score=55.78 Aligned_cols=49 Identities=24% Similarity=0.561 Sum_probs=38.6
Q ss_pred CCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHhcCCcccccCccccc
Q 045467 73 SHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAV 127 (237)
Q Consensus 73 ~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~ 127 (237)
+...|.||++...+.....||. +.+|..|+.+|+.. +...|++|+..+.
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECL-----HRFCADCIITALRS-GNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTC-----CEEEHHHHHHHHHT-TCCBCTTTCCBCC
T ss_pred CCCCCcccChHhhCcCEeCCCC-----ChhHHHHHHHHHHh-CcCCCCCCCCcCC
Confidence 3458999988877644444887 68999999999985 4568999998874
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=96.73 E-value=0.0012 Score=51.02 Aligned_cols=49 Identities=24% Similarity=0.419 Sum_probs=38.6
Q ss_pred CCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHhcCCcccccCcccccc
Q 045467 73 SHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAVN 128 (237)
Q Consensus 73 ~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~~ 128 (237)
+...|.||++...+ +...||. +..|..|+.+|+. .+...|++|+..+..
T Consensus 51 ~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFR-PITTVCQ-----HNVCKDCLDRSFR-AQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSS-EEECTTS-----CEEEHHHHHHHHH-TTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcC-cEEeeCC-----CcccHHHHHHHHh-HCcCCCCCCCccCCC
Confidence 34689999887765 4456887 5789999999998 355689999998754
No 38
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=96.71 E-value=0.001 Score=47.14 Aligned_cols=48 Identities=17% Similarity=0.372 Sum_probs=38.4
Q ss_pred CCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHhcCCcccccCccccc
Q 045467 73 SHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAV 127 (237)
Q Consensus 73 ~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~ 127 (237)
+.-.|.||++...+ +...||. +..++.|+.+|+.. +..+|++|+..+.
T Consensus 7 ~~~~C~IC~~~~~~-Pv~~~Cg-----H~fc~~Ci~~~~~~-~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 7 EYFRCPISLELMKD-PVIVSTG-----QTYERSSIQKWLDA-GHKTCPKSQETLL 54 (78)
T ss_dssp SSSSCTTTSCCCSS-EEEETTT-----EEEEHHHHHHHHTT-TCCBCTTTCCBCS
T ss_pred ccCCCCCccccccC-CEEcCCC-----CeecHHHHHHHHHH-CcCCCCCCcCCCC
Confidence 45789999887765 4557887 67899999999974 5678999998874
No 39
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=96.69 E-value=0.00066 Score=51.35 Aligned_cols=49 Identities=20% Similarity=0.461 Sum_probs=38.9
Q ss_pred CCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHhcCCcccccCcccccc
Q 045467 73 SHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAVN 128 (237)
Q Consensus 73 ~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~~ 128 (237)
+...|.||++...+.....||. +..|..|+.+|+..+ ..|++|+..+..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECL-----HSFCKTCIVRYLETS--KYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTC-----CEEEHHHHHHHHTSC--SBCTTTCCBSCS
T ss_pred CcCCCccCChHHhCcCEeCCCC-----ChhhHHHHHHHHHhC--CcCcCCCccccc
Confidence 4578999988876644434987 678999999999875 689999988754
No 40
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.62 E-value=0.00059 Score=52.13 Aligned_cols=50 Identities=16% Similarity=0.516 Sum_probs=39.5
Q ss_pred CCCCceeEeccCCCcc------ceeccccccCCCccccHHHHHHHHHhcCCcccccCcccccc
Q 045467 72 SSHEQCRVCQQDKEEV------LIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAVN 128 (237)
Q Consensus 72 s~~~~CRIC~~~~~~~------~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~~ 128 (237)
++...|-||++...+. ...+||. +..|..|+.+|++.+. .|++|+..+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNAN--TCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTC-----CEEEHHHHHHHHTTCS--BCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCC-----ChhhHHHHHHHHHhCC--CCCCCCCcCcc
Confidence 4567899999876432 2668998 6899999999998654 89999998753
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.52 E-value=0.0013 Score=49.35 Aligned_cols=48 Identities=19% Similarity=0.518 Sum_probs=37.9
Q ss_pred CCceeEeccCCCccceeccccccCCCccccHHHHHHHHHhc-CCcccccCccccc
Q 045467 74 HEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTK-GSNKCEICQQVAV 127 (237)
Q Consensus 74 ~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s-~~~~CEiCk~~~~ 127 (237)
...|.||++...+ +...||. +.+|..|+.+|+..+ +...|++|+..+.
T Consensus 21 ~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 21 ILECPICLELIKE-PVSTKCD-----HIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HTSCSSSCCCCSS-CCBCTTS-----CCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCcccChhhcC-eEECCCC-----CHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 4689999887655 3447887 678999999999875 4568999998764
No 42
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.51 E-value=0.00088 Score=53.07 Aligned_cols=45 Identities=31% Similarity=0.702 Sum_probs=36.1
Q ss_pred CceeEeccCCCccceeccccccCCCccccHHHHHHHHHhcCCcccccCccccc
Q 045467 75 EQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAV 127 (237)
Q Consensus 75 ~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~ 127 (237)
..|.||++...+ +...||. +..|..|+.+|+..+ ..|++|+..+.
T Consensus 54 ~~C~iC~~~~~~-~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 98 (138)
T 4ayc_A 54 LQCIICSEYFIE-AVTLNCA-----HSFCSYCINEWMKRK--IECPICRKDIK 98 (138)
T ss_dssp SBCTTTCSBCSS-EEEETTS-----CEEEHHHHHHHTTTC--SBCTTTCCBCC
T ss_pred CCCcccCcccCC-ceECCCC-----CCccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 469999887755 4557986 689999999999764 57999998764
No 43
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=96.45 E-value=0.0038 Score=45.62 Aligned_cols=54 Identities=19% Similarity=0.400 Sum_probs=40.8
Q ss_pred CCCCceeEeccCCCc-cceeccccccCCCccccHHHHHHHHHhcCCcccccCccccccc
Q 045467 72 SSHEQCRVCQQDKEE-VLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAVNV 129 (237)
Q Consensus 72 s~~~~CRIC~~~~~~-~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~~v 129 (237)
.++..|-||++.... +....||.| | +.+++.|+.++... ++..|++|+..|...
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~C-G--H~fC~~Cl~~~~~~-~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTC-G--YQICRFCWHRIRTD-ENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTT-S--CCCCHHHHHHHTTS-SCSBCTTTCCBCSSC
T ss_pred ccCCcCCccCccCccccccccccCC-C--CCcCHHHHHHHHhc-CCCCCCCCCCccCCC
Confidence 456789999997643 445578777 2 45899999998754 567899999998654
No 44
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.07 E-value=0.0022 Score=48.87 Aligned_cols=50 Identities=18% Similarity=0.525 Sum_probs=38.8
Q ss_pred CCCCCceeEeccCCCc------cceeccccccCCCccccHHHHHHHHHhcCCcccccCccccc
Q 045467 71 ASSHEQCRVCQQDKEE------VLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAV 127 (237)
Q Consensus 71 ~s~~~~CRIC~~~~~~------~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~ 127 (237)
+.+...|-||++...+ .....+|. +..|..|+.+|++.+ .+|++|+..+.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 124 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKIN 124 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTS-----BEEEHHHHHHHHHHC--SBCTTTCCBCC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCC-----ChhhHHHHHHHHHcC--CCCCCCCCcCC
Confidence 4567889999887543 12556776 679999999999875 48999998874
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=96.04 E-value=0.0048 Score=47.43 Aligned_cols=50 Identities=22% Similarity=0.549 Sum_probs=39.3
Q ss_pred CCCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHhcCCcccccCcccccc
Q 045467 72 SSHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAVN 128 (237)
Q Consensus 72 s~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~~ 128 (237)
.+...|.||++...+. ...||. ...+..|+.+|+..++. .|++|+..+..
T Consensus 16 ~~~~~C~IC~~~~~~p-~~~~Cg-----H~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMALREA-VQTPCG-----HRFCKACIIKSIRDAGH-KCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBCSSE-EECTTS-----CEEEHHHHHHHHHHHCS-BCTTTCCBCCG
T ss_pred CCCCCCCcCChhhcCe-EECCcC-----ChhhHHHHHHHHhhCCC-CCCCCCCCcCH
Confidence 4557899998776553 557886 67999999999988654 79999987743
No 46
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=96.00 E-value=0.0036 Score=50.74 Aligned_cols=48 Identities=17% Similarity=0.402 Sum_probs=38.2
Q ss_pred CCceeEeccCCCccceeccccccCCCccccHHHHHHHHHhcCCcccccCcccccc
Q 045467 74 HEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAVN 128 (237)
Q Consensus 74 ~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~~ 128 (237)
...|.||++...+ +..+||. +.++..|+.+|+.. +...|++|+..+..
T Consensus 78 ~~~C~IC~~~~~~-pv~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 78 SFMCVCCQELVYQ-PVTTECF-----HNVCKDCLQRSFKA-QVFSCPACRHDLGQ 125 (150)
T ss_dssp HTBCTTTSSBCSS-EEECTTS-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCT
T ss_pred CCEeecCChhhcC-CEEcCCC-----CchhHHHHHHHHHh-CCCcCCCCCccCCC
Confidence 4689999887655 4457987 57899999999985 45589999998754
No 47
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=95.98 E-value=0.0047 Score=58.03 Aligned_cols=51 Identities=18% Similarity=0.571 Sum_probs=39.8
Q ss_pred CCCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHhcCCcccccCccccccc
Q 045467 72 SSHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAVNV 129 (237)
Q Consensus 72 s~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~~v 129 (237)
+....|.||++...+ +...||. +..|..|+.+|+.. +...|++|+..+...
T Consensus 330 ~~~~~C~ICle~~~~-pv~lpCG-----H~FC~~Ci~~wl~~-~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 330 STFQLCKICAENDKD-VKIEPCG-----HLMCTSCLTSWQES-EGQGCPFCRCEIKGT 380 (389)
T ss_dssp TSSSBCTTTSSSBCC-EEEETTC-----CEECHHHHHHHHHH-TCSBCTTTCCBCCEE
T ss_pred CCCCCCCccCcCCCC-eEEeCCC-----ChhhHHHHHHHHhc-CCCCCCCCCCccCCc
Confidence 344799999877654 4568998 46799999999985 456899999987543
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=95.83 E-value=0.0052 Score=46.82 Aligned_cols=48 Identities=17% Similarity=0.479 Sum_probs=38.2
Q ss_pred CCceeEeccCCCccceeccccccCCCccccHHHHHHHHHhcCCcccccCcccccc
Q 045467 74 HEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAVN 128 (237)
Q Consensus 74 ~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~~ 128 (237)
...|.||++...+ +..+||. +..+..|+.+|+..+ ...|++|+..+..
T Consensus 23 ~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILAD-PVETSCK-----HLFCRICILRCLKVM-GSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHHT-CSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhcC-cEEcCCC-----CcccHHHHHHHHhHC-cCcCCCCCCCCCH
Confidence 4689999887765 3447887 678999999999884 4579999998753
No 49
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.71 E-value=0.0054 Score=57.41 Aligned_cols=56 Identities=20% Similarity=0.558 Sum_probs=37.5
Q ss_pred CCCCceeEeccCCCc-cce-eccccccCCCccccHHHHHHHHHhcCC---------cccccCccccc
Q 045467 72 SSHEQCRVCQQDKEE-VLI-DLGCQCRGGLAKAHRSCINTWFRTKGS---------NKCEICQQVAV 127 (237)
Q Consensus 72 s~~~~CRIC~~~~~~-~~l-~~PC~CkGsl~~vH~~CL~~Wl~~s~~---------~~CEiCk~~~~ 127 (237)
.....|-||+....+ +.+ ...|.-.-=-+..|..||.+||+...+ ..|+.|++...
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 456789999988644 222 233531011267999999999987543 48999998653
No 50
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=95.35 E-value=0.0017 Score=49.51 Aligned_cols=49 Identities=22% Similarity=0.493 Sum_probs=38.4
Q ss_pred CCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHhcCCcccccCcccccc
Q 045467 73 SHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAVN 128 (237)
Q Consensus 73 ~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~~ 128 (237)
++..|.||++...+ +...||. +..+..|+.+|+.. +...|++|+..+..
T Consensus 14 ~~~~C~iC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVE-PVTLPCN-----HTLCKPCFQSTVEK-ASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSS-CEECTTS-----CEECHHHHCCCCCT-TTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCc-eeEcCCC-----CHHhHHHHHHHHhH-CcCCCCCCCcccCc
Confidence 34689999877654 4456887 57999999999965 45789999998754
No 51
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=95.33 E-value=0.011 Score=51.79 Aligned_cols=51 Identities=18% Similarity=0.590 Sum_probs=38.9
Q ss_pred CCCceeEeccCCCccceecccc-ccCCCccccHHHHHHHHHhcCCcccccCccccccc
Q 045467 73 SHEQCRVCQQDKEEVLIDLGCQ-CRGGLAKAHRSCINTWFRTKGSNKCEICQQVAVNV 129 (237)
Q Consensus 73 ~~~~CRIC~~~~~~~~l~~PC~-CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~~v 129 (237)
.-..|-||+.--..+. -|. |. ...|..|+.+|++.+++..|+.|+..+..-
T Consensus 179 ~i~~C~iC~~iv~~g~---~C~~C~---~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQ---SCETCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSCE---ECSSSC---CEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCCc---ccCccC---hHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 4688999977654332 232 42 579999999999998888999999987654
No 52
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.94 E-value=0.0043 Score=47.63 Aligned_cols=46 Identities=20% Similarity=0.433 Sum_probs=36.5
Q ss_pred CCCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHhcCCcccccCcccc
Q 045467 72 SSHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVA 126 (237)
Q Consensus 72 s~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~ 126 (237)
.+...|.||++...+.....||. +..+..|+.+|+. ..|++|+..+
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~Cg-----H~fC~~Ci~~~~~----~~CP~Cr~~~ 65 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCE-----HIFCSNCVSDCIG----TGCPVCYTPA 65 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSS-----CCBCTTTGGGGTT----TBCSSSCCBC
T ss_pred hhCCCCCCCChHhhCccEeCCCC-----CHHHHHHHHHHhc----CCCcCCCCcC
Confidence 34678999988876544333887 6789999999997 6899999886
No 53
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=94.82 E-value=0.013 Score=40.76 Aligned_cols=50 Identities=20% Similarity=0.361 Sum_probs=36.3
Q ss_pred CCCCceeEeccCCCccce-eccccccCCCcc-ccHHHHHHHHHhcCCcccccCcccccc
Q 045467 72 SSHEQCRVCQQDKEEVLI-DLGCQCRGGLAK-AHRSCINTWFRTKGSNKCEICQQVAVN 128 (237)
Q Consensus 72 s~~~~CRIC~~~~~~~~l-~~PC~CkGsl~~-vH~~CL~~Wl~~s~~~~CEiCk~~~~~ 128 (237)
.++..|.||++...+..+ ..||. +. +=..|+.+|.+. +..|++|+..+..
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCg-----H~~~C~~C~~~~~~~--~~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTG-----HLMACFTCAKKLKKR--NKPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEE-----EEEECHHHHHHHHHT--TCCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCCCEEEECCCCC-----ChhhHHHHHHHHHHc--CCcCCCcCcchhc
Confidence 356789999988765443 24997 33 348999999975 3579999987754
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=94.49 E-value=0.017 Score=40.03 Aligned_cols=49 Identities=14% Similarity=0.289 Sum_probs=36.3
Q ss_pred CCCceeEeccCCCccc-eeccccccCCCcc-ccHHHHHHHHHhcCCcccccCcccccc
Q 045467 73 SHEQCRVCQQDKEEVL-IDLGCQCRGGLAK-AHRSCINTWFRTKGSNKCEICQQVAVN 128 (237)
Q Consensus 73 ~~~~CRIC~~~~~~~~-l~~PC~CkGsl~~-vH~~CL~~Wl~~s~~~~CEiCk~~~~~ 128 (237)
....|.||++...+.. +..||. +. +=..|+.+|.+.+ ..|++|+..+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCg-----H~~~C~~C~~~~~~~~--~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTG-----HLVTCFHCARRLKKAG--ASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEE-----EEEECHHHHHHHHHTT--CBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCC-----CHhHHHHHHHHHHHhC--CcCCCcCchhhc
Confidence 4578999998765533 235998 33 5789999998653 589999988753
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=94.23 E-value=0.012 Score=41.79 Aligned_cols=44 Identities=18% Similarity=0.576 Sum_probs=34.9
Q ss_pred CCCceeEeccCCCccceeccccccCCCcc-ccHHHHHHHHHhcCCcccccCcccccc
Q 045467 73 SHEQCRVCQQDKEEVLIDLGCQCRGGLAK-AHRSCINTWFRTKGSNKCEICQQVAVN 128 (237)
Q Consensus 73 ~~~~CRIC~~~~~~~~l~~PC~CkGsl~~-vH~~CL~~Wl~~s~~~~CEiCk~~~~~ 128 (237)
+...|.||++...+ .+..||. +. ....|+.+| ..|++|+..+..
T Consensus 23 ~~~~C~iC~~~~~~-~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIA-IVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCC-EEEETTC-----CBCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCC-EEEcCCC-----ChhHHHHhhhcC------ccCCCcCcCccC
Confidence 45789999887655 4457997 55 899999999 689999988754
No 56
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=93.60 E-value=0.038 Score=46.92 Aligned_cols=48 Identities=8% Similarity=-0.062 Sum_probs=37.5
Q ss_pred CCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHhcCCcccccCccccc
Q 045467 73 SHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAV 127 (237)
Q Consensus 73 ~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~ 127 (237)
+.-.|-||++-..+ ++++||. +..-+.|+.+|+..++.. |++|+..+.
T Consensus 207 ~~~~c~i~~~~~~d-Pv~~~~g-----h~f~~~~i~~~~~~~~~~-cP~~~~~~~ 254 (281)
T 2c2l_A 207 DYLCGKISFELMRE-PCITPSG-----ITYDRKDIEEHLQRVGHF-NPVTRSPLT 254 (281)
T ss_dssp STTBCTTTCSBCSS-EEECSSC-----CEEETTHHHHHHHHTCSS-CTTTCCCCC
T ss_pred cccCCcCcCCHhcC-CeECCCC-----CEECHHHHHHHHHHCCCC-CcCCCCCCc
Confidence 45689999877665 5568885 467799999999886544 999998874
No 57
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=93.08 E-value=0.026 Score=45.25 Aligned_cols=49 Identities=14% Similarity=0.457 Sum_probs=38.1
Q ss_pred CCCCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHhcCCcccccCcccc
Q 045467 71 ASSHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVA 126 (237)
Q Consensus 71 ~s~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~ 126 (237)
-.+.-.|-||++...+. +.++|. ...++.|+.+|++. +...|++|+...
T Consensus 28 l~~~~~C~IC~~~~~~p-v~~~Cg-----H~FC~~Ci~~~~~~-~~~~CP~Cr~~~ 76 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP-FQAQCG-----HRYCSFCLASILSS-GPQNCAACVHEG 76 (141)
T ss_dssp CCGGGBCTTTCSBCSSE-EECTTS-----CEEEHHHHHHHGGG-SCEECHHHHHTT
T ss_pred CCcCcCCCCCChhhcCc-EECCCC-----CccCHHHHHHHHhc-CCCCCCCCCCcc
Confidence 34567899998877654 557887 57899999999974 456899999864
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=92.92 E-value=0.072 Score=43.01 Aligned_cols=51 Identities=22% Similarity=0.531 Sum_probs=39.2
Q ss_pred CCCCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHhcCCcccccCcccccc
Q 045467 71 ASSHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAVN 128 (237)
Q Consensus 71 ~s~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~~ 128 (237)
-.+.-.|-||++...+. +..||. ..+...|+.+|+..++. +|++|+..+..
T Consensus 15 ~~~~~~C~IC~~~~~~p-v~~~Cg-----H~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALREA-VQTPCG-----HRFCKACIIKSIRDAGH-KCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCSSE-EECTTS-----CEEEHHHHHHHHHHHCS-BCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhcCc-EECCCC-----CHHHHHHHHHHHHhCCC-CCCCCccCcch
Confidence 34557899998877654 557876 57899999999987654 89999987643
No 59
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=92.86 E-value=0.15 Score=37.15 Aligned_cols=47 Identities=13% Similarity=0.014 Sum_probs=36.9
Q ss_pred CCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHhcCCcccccCccccc
Q 045467 73 SHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAV 127 (237)
Q Consensus 73 ~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~ 127 (237)
++-.|-||++-..+ +..+||. +..-+.|+.+|+.. ..+|++|+..+.
T Consensus 13 ~~~~CpI~~~~m~d-PV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~ 59 (85)
T 2kr4_A 13 DEFRDPLMDTLMTD-PVRLPSG-----TVMDRSIILRHLLN--SPTDPFNRQMLT 59 (85)
T ss_dssp TTTBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCC
T ss_pred hheECcccCchhcC-CeECCCC-----CEECHHHHHHHHhc--CCCCCCCcCCCC
Confidence 45789999877665 4567875 46789999999985 468999998774
No 60
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.50 E-value=0.13 Score=36.12 Aligned_cols=46 Identities=22% Similarity=0.590 Sum_probs=33.6
Q ss_pred CCCCceeEeccCCCccceeccccccCCCcc-ccHHHHHHHHHhcCCcccccCccccccc
Q 045467 72 SSHEQCRVCQQDKEEVLIDLGCQCRGGLAK-AHRSCINTWFRTKGSNKCEICQQVAVNV 129 (237)
Q Consensus 72 s~~~~CRIC~~~~~~~~l~~PC~CkGsl~~-vH~~CL~~Wl~~s~~~~CEiCk~~~~~v 129 (237)
.+...|.||++...+ .+..||. +. +-..|+.+ ...|++|+..+..+
T Consensus 13 ~~~~~C~IC~~~~~~-~v~~pCg-----H~~~C~~C~~~------~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN-WVLLPCR-----HTCLCDGCVKY------FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSSCCSSSSSSCCC-CEETTTT-----BCCSCTTHHHH------CSSCTTTCCCCCCE
T ss_pred CCCCCCCCcCcCCCC-EEEECCC-----ChhhhHHHHhc------CCCCCCCCcchhce
Confidence 346789999887654 4558998 34 67789873 36899999987543
No 61
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=92.07 E-value=0.2 Score=37.77 Aligned_cols=47 Identities=13% Similarity=-0.000 Sum_probs=37.0
Q ss_pred CCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHhcCCcccccCccccc
Q 045467 73 SHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAV 127 (237)
Q Consensus 73 ~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~ 127 (237)
++-.|-||++-..+ +..+||. +..-+.|+.+|+.. ..+|++|+..+.
T Consensus 28 ~~~~CpI~~~~m~d-PV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~ 74 (100)
T 2kre_A 28 DEFRDPLMDTLMTD-PVRLPSG-----TIMDRSIILRHLLN--SPTDPFNRQTLT 74 (100)
T ss_dssp TTTBCTTTCSBCSS-EEEETTT-----EEEEHHHHHHHTTS--CSBCSSSCCBCC
T ss_pred HhhCCcCccCcccC-CeECCCC-----CEEchHHHHHHHHc--CCCCCCCCCCCC
Confidence 46789999877655 4567875 45789999999984 568999998874
No 62
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=91.56 E-value=0.049 Score=36.56 Aligned_cols=45 Identities=22% Similarity=0.448 Sum_probs=33.8
Q ss_pred CCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHhcCCcccccCcccccc
Q 045467 73 SHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAVN 128 (237)
Q Consensus 73 ~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~~ 128 (237)
+...|.||++...+ +..+||. +..+..|+.+ ....|++|+..+..
T Consensus 5 ~~~~C~IC~~~~~~-p~~l~Cg-----H~fC~~Ci~~-----~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKC-PKLLPCL-----HTLCSGCLEA-----SGMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBC-CSCSTTS-----CCSBTTTCSS-----SSSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCC-eEEcCCC-----CcccHHHHcc-----CCCCCCcCCcEeec
Confidence 45679999887765 3557987 4678999877 35689999988643
No 63
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=91.54 E-value=0.12 Score=43.54 Aligned_cols=48 Identities=8% Similarity=-0.073 Sum_probs=37.8
Q ss_pred CCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHhcCCcccccCccccc
Q 045467 73 SHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAV 127 (237)
Q Consensus 73 ~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~ 127 (237)
+.-.|.||++-..+ ++++||. +..=+.|+.+|+...+. +|++|+..+.
T Consensus 105 ~~f~CPI~~elm~D-PV~~~~G-----htfer~~I~~~l~~~~~-tcP~t~~~l~ 152 (179)
T 2f42_A 105 DYLCGKISFELMRE-PCITPSG-----ITYDRKDIEEHLQRVGH-FDPVTRSPLT 152 (179)
T ss_dssp GGGBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHHTCS-BCTTTCCBCC
T ss_pred HhhcccCccccCCC-CeECCCC-----CEECHHHHHHHHHhCCC-CCCCCcCCCC
Confidence 45689999877665 5667875 56789999999988665 7999998874
No 64
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=91.27 E-value=0.15 Score=37.37 Aligned_cols=50 Identities=18% Similarity=0.458 Sum_probs=37.3
Q ss_pred CCCCceeEeccCCCcccee--ccccccCCCccccHHHHHHHHHhc---C---Cccccc--Ccccc
Q 045467 72 SSHEQCRVCQQDKEEVLID--LGCQCRGGLAKAHRSCINTWFRTK---G---SNKCEI--CQQVA 126 (237)
Q Consensus 72 s~~~~CRIC~~~~~~~~l~--~PC~CkGsl~~vH~~CL~~Wl~~s---~---~~~CEi--Ck~~~ 126 (237)
++...|-||++......+. .||. +..-+.|+.+++..+ | ...|+. |+..+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~Cg-----H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQ-----CIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTT-----EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CCCcCCcccCcccccccceEcCCCC-----CcccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence 3456799999887554333 4798 578999999999764 2 468999 98873
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.10 E-value=0.11 Score=36.57 Aligned_cols=43 Identities=19% Similarity=0.600 Sum_probs=32.1
Q ss_pred CCceeEeccCCCccceeccccccCCCcc-ccHHHHHHHHHhcCCcccccCcccccc
Q 045467 74 HEQCRVCQQDKEEVLIDLGCQCRGGLAK-AHRSCINTWFRTKGSNKCEICQQVAVN 128 (237)
Q Consensus 74 ~~~CRIC~~~~~~~~l~~PC~CkGsl~~-vH~~CL~~Wl~~s~~~~CEiCk~~~~~ 128 (237)
...|.||++...+ ....||. +. +...|+.+ ...|++|+..+..
T Consensus 25 ~~~C~IC~~~~~~-~~~~pCg-----H~~~C~~C~~~------~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIA-IVFVPCG-----HLVTCKQCAEA------VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCC-BCCSSSC-----CCCBCHHHHHH------CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCC-EEEecCC-----CHHHHHHHhhC------CCCCccCCceecC
Confidence 4679999887654 4457997 45 78999854 2689999988754
No 66
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=89.12 E-value=0.43 Score=35.84 Aligned_cols=48 Identities=8% Similarity=-0.038 Sum_probs=36.6
Q ss_pred CCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHhcCCcccccCccccc
Q 045467 73 SHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAV 127 (237)
Q Consensus 73 ~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~ 127 (237)
++-.|-||++-..+ ++..||. | +-.-+.|+.+|+.. ..+|++|+..+.
T Consensus 21 ~~~~CpI~~~~m~d-PV~~~cG--~--htf~r~cI~~~l~~--~~~cP~~~~~l~ 68 (98)
T 1wgm_A 21 DEFLDPIMSTLMCD-PVVLPSS--R--VTVDRSTIARHLLS--DQTDPFNRSPLT 68 (98)
T ss_dssp TTTBCTTTCSBCSS-EEECTTT--C--CEEEHHHHHHHTTT--SCBCTTTCSBCC
T ss_pred HhcCCcCccccccC-CeECCCC--C--eEECHHHHHHHHHh--CCCCCCCCCCCC
Confidence 46789999877665 4557865 1 35779999999986 458999998875
No 67
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.28 E-value=0.47 Score=34.97 Aligned_cols=48 Identities=15% Similarity=0.353 Sum_probs=36.7
Q ss_pred CCCCceeEeccCCCccceecc-ccccCCCccccHHHHHHHHHhc----CCccccc--Cccc
Q 045467 72 SSHEQCRVCQQDKEEVLIDLG-CQCRGGLAKAHRSCINTWFRTK----GSNKCEI--CQQV 125 (237)
Q Consensus 72 s~~~~CRIC~~~~~~~~l~~P-C~CkGsl~~vH~~CL~~Wl~~s----~~~~CEi--Ck~~ 125 (237)
.++-.|-||++...+ ++.+| |. +-.-+.|+.+|+... +..+|++ |...
T Consensus 5 ~~~~~CPI~~~~~~d-PV~~~~cG-----h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK-PVKNKVCG-----HTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSS-EEEESSSC-----CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcC-CEEcCCCC-----CeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 345789999877665 55665 86 567899999999875 4578999 9855
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=86.91 E-value=0.14 Score=47.11 Aligned_cols=44 Identities=20% Similarity=0.620 Sum_probs=35.0
Q ss_pred CCCceeEeccCCCccceeccccccCCCcc-ccHHHHHHHHHhcCCcccccCcccccc
Q 045467 73 SHEQCRVCQQDKEEVLIDLGCQCRGGLAK-AHRSCINTWFRTKGSNKCEICQQVAVN 128 (237)
Q Consensus 73 ~~~~CRIC~~~~~~~~l~~PC~CkGsl~~-vH~~CL~~Wl~~s~~~~CEiCk~~~~~ 128 (237)
++..|.||++...+ ++..||. +. +...|+.+| ..|++|+..+..
T Consensus 294 ~~~~C~IC~~~~~~-~v~lpCg-----H~~fC~~C~~~~------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS-VVFIPCG-----HLVVCQECAPSL------RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC-EEEETTC-----CEEECTTTGGGC------SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCc-eEEcCCC-----ChhHhHHHHhcC------CcCCCCCCCccC
Confidence 56899999887755 3446998 45 889999988 689999998754
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=85.65 E-value=0.56 Score=42.04 Aligned_cols=52 Identities=21% Similarity=0.390 Sum_probs=40.0
Q ss_pred CCCCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHhcCCccccc--Cccccc
Q 045467 71 ASSHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEI--CQQVAV 127 (237)
Q Consensus 71 ~s~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEi--Ck~~~~ 127 (237)
....-.|-||++-..+.-....|. +-.=+.|+.+|+...+...|++ |+..+.
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CG-----HsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCN-----HVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSC-----CEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred CceeeECcCccCcccCCeeeCCCC-----CcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 345678999988776533324776 4678999999999878889999 998764
No 70
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=82.18 E-value=0.4 Score=34.46 Aligned_cols=44 Identities=18% Similarity=0.443 Sum_probs=32.4
Q ss_pred CCCceeEeccCCCccceeccccccCCCcc-ccHHHHHHHHHhcCCcccccCcccccc
Q 045467 73 SHEQCRVCQQDKEEVLIDLGCQCRGGLAK-AHRSCINTWFRTKGSNKCEICQQVAVN 128 (237)
Q Consensus 73 ~~~~CRIC~~~~~~~~l~~PC~CkGsl~~-vH~~CL~~Wl~~s~~~~CEiCk~~~~~ 128 (237)
+...|.||++...+ ....||. +. +=..|+.+| ..|++|+..+..
T Consensus 17 ~~~~C~IC~~~~~~-~v~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEIN-STFCPCG-----HTVCCESCAAQL------QSCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBCC-EEEETTC-----BCCBCHHHHTTC------SBCTTTCCBCCE
T ss_pred CCCEeEEeCcccCc-EEEECCC-----CHHHHHHHHHhc------CcCCCCCchhhC
Confidence 34689999877654 4457998 23 457898877 389999998754
No 71
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=81.30 E-value=0.88 Score=31.34 Aligned_cols=45 Identities=9% Similarity=0.149 Sum_probs=33.5
Q ss_pred CceeEeccCCCccceec-cccccCCCccccHHHHHHHHHhcCCcccccCccccc
Q 045467 75 EQCRVCQQDKEEVLIDL-GCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAV 127 (237)
Q Consensus 75 ~~CRIC~~~~~~~~l~~-PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~ 127 (237)
-.|.||++...+ +.++ +|. .-.=+.|+++|++..+ +|++++....
T Consensus 4 ~~CpIs~~~m~d-PV~~~~sG-----~~yer~~I~~~l~~~~--~cP~t~~~L~ 49 (61)
T 2bay_A 4 MLCAISGKVPRR-PVLSPKSR-----TIFEKSLLEQYVKDTG--NDPITNEPLS 49 (61)
T ss_dssp CCCTTTCSCCSS-EEEETTTT-----EEEEHHHHHHHHHHHS--BCTTTCCBCC
T ss_pred EEecCCCCCCCC-CEEeCCCC-----cEEcHHHHHHHHHhCC--CCcCCcCCCC
Confidence 468888777664 4555 554 4678999999998765 5999998764
No 72
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=68.79 E-value=1.7 Score=30.73 Aligned_cols=47 Identities=19% Similarity=0.370 Sum_probs=32.6
Q ss_pred CCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHh--cCCcccccCccc
Q 045467 73 SHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRT--KGSNKCEICQQV 125 (237)
Q Consensus 73 ~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~--s~~~~CEiCk~~ 125 (237)
....|.||..+.+ |+ - |.+=-+..|..|+.-.+.. ++.+.|..|...
T Consensus 11 ~~~~C~vC~~~~~---ll-~--Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDGTD---VL-R--CTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCCTT---CE-E--CSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCCCe---EE-E--CCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 4467999975432 22 2 3344478999999877755 477899999754
No 73
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=67.09 E-value=12 Score=28.54 Aligned_cols=53 Identities=23% Similarity=0.476 Sum_probs=36.1
Q ss_pred CCCCceeEeccCC---Cc-cceeccccccCCCcc-ccHHHHHHHHHhcCCcccccCccccccc
Q 045467 72 SSHEQCRVCQQDK---EE-VLIDLGCQCRGGLAK-AHRSCINTWFRTKGSNKCEICQQVAVNV 129 (237)
Q Consensus 72 s~~~~CRIC~~~~---~~-~~l~~PC~CkGsl~~-vH~~CL~~Wl~~s~~~~CEiCk~~~~~v 129 (237)
....+|.||-+.- .+ +.+ .-|+ .-+| |=+.|.+-=++. ++..|..||.+|.-.
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~F-VAC~---eC~FPvCrpCyEYErke-G~q~CpqCktrYkr~ 71 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLF-VACN---ECGFPACRPCYEYERRE-GTQNCPQCKTRYKRL 71 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBC-CSCS---SSCCCCCHHHHHHHHHT-SCSSCTTTCCCCCCC
T ss_pred cCCCccccccCccccCCCCCEE-Eeee---ccCChhhHHHHHHHHhc-cCccccccCCccccc
Confidence 3568999997763 22 344 3343 1233 788998866655 888999999999743
No 74
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=54.77 E-value=7.2 Score=29.29 Aligned_cols=48 Identities=23% Similarity=0.407 Sum_probs=29.6
Q ss_pred CCCCceeEeccCCCcccee--ccccccCCCccccHHHHHHHHHh--cCCcccccCccc
Q 045467 72 SSHEQCRVCQQDKEEVLID--LGCQCRGGLAKAHRSCINTWFRT--KGSNKCEICQQV 125 (237)
Q Consensus 72 s~~~~CRIC~~~~~~~~l~--~PC~CkGsl~~vH~~CL~~Wl~~--s~~~~CEiCk~~ 125 (237)
.+...| ||...... .++ --|.|.. .+.|..|+. +.. ++...|+.|...
T Consensus 34 ~e~~yC-iC~~~~~g-~MI~CD~~dC~~--~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 34 NEPTYC-LCHQVSYG-EMIGCDNPDCSI--EWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCCBCS-TTCCBCCS-CCCCCSCSSCSC--CCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCCcEE-ECCCCCCC-CEeEecCCCCCC--CCEecccCC--cCcCCCCCEECcCccCc
Confidence 455677 88775433 343 1222432 589999987 333 367899999653
No 75
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=49.67 E-value=4.5 Score=29.92 Aligned_cols=51 Identities=20% Similarity=0.425 Sum_probs=33.1
Q ss_pred CCCCceeEeccCC--CccceeccccccCCCccccHHHHHHHHHhcCCcccccCccc
Q 045467 72 SSHEQCRVCQQDK--EEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQV 125 (237)
Q Consensus 72 s~~~~CRIC~~~~--~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~ 125 (237)
.+...|.||..+. .++.|+ -|. +=-..+|..|+.-=..-.|.+.|..|...
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll-~CD--~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVIL-FCD--MCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEE-ECS--SSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCcCCcCCCCCCCCCCCEE-ECC--CCCchhhcccCCCCccCCCceECccccCc
Confidence 4568999998775 333443 332 33356899998643344578889999654
No 76
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=49.07 E-value=3.5 Score=26.91 Aligned_cols=47 Identities=23% Similarity=0.519 Sum_probs=27.9
Q ss_pred CceeEeccCCCccceeccccccCCCccccHHHHHHHHH--hcCCcccccCcc
Q 045467 75 EQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFR--TKGSNKCEICQQ 124 (237)
Q Consensus 75 ~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~--~s~~~~CEiCk~ 124 (237)
+.|.||....+++.++ - |.+=-+..|..|+.-=+. -++...|..|..
T Consensus 1 a~C~vC~~~~~~~~ll-~--Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 1 ARCKVCRKKGEDDKLI-L--CDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCCTTTCCSSCCSCCE-E--CTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCCEE-E--CCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 3588998776544443 2 234446889999842111 135677888853
No 77
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=48.99 E-value=3.1 Score=29.72 Aligned_cols=50 Identities=20% Similarity=0.432 Sum_probs=32.3
Q ss_pred CCCCceeEeccCC--CccceeccccccCCCccccHHHHHHHHHhcCCcccccCcc
Q 045467 72 SSHEQCRVCQQDK--EEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQ 124 (237)
Q Consensus 72 s~~~~CRIC~~~~--~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~ 124 (237)
.+...|.||.... +++.|+ -| ++=-..+|..|+.-=..-+|.+.|..|..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll-~C--D~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVIL-FC--DMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEE-EC--SSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEE-EC--CCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 4568899998775 333443 23 23335889999863333457788888864
No 78
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=48.02 E-value=2.9 Score=31.54 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=27.0
Q ss_pred CCCCCCceeEeccCCCccceeccccccCCCccccHHHHHHHHH
Q 045467 70 TASSHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFR 112 (237)
Q Consensus 70 ~~s~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~ 112 (237)
+...++.|.||....+...|+ -| .+=-+..|..||.-.+.
T Consensus 3 ~~~~~~~C~~C~~~g~~~~ll-~C--~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 3 SGSSGANCAVCDSPGDLLDQF-FC--TTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCCSCBTTTCCCCCTTTSE-EC--SSSCCEECTTTTTCCCC
T ss_pred CCCCCCCCcCCCCCCCCcCCe-EC--CCCCCCcChHHhCCccc
Confidence 345678999998876543342 33 34347899999987654
No 79
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=48.01 E-value=9.3 Score=29.43 Aligned_cols=46 Identities=15% Similarity=0.460 Sum_probs=33.8
Q ss_pred CCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHhcCCcccccCccccc
Q 045467 73 SHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAV 127 (237)
Q Consensus 73 ~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~ 127 (237)
..-.|..|...... |+ .|+ -+|.=..||..-++.++ .|+||++...
T Consensus 27 G~~nCKsCWf~~k~--LV-~C~----dHYLCl~CLtlmL~~Sd--rCpIC~~pLP 72 (99)
T 2ko5_A 27 GPQFCKSCWFENKG--LV-ECN----NHYLCLNCLTLLLSVSN--RCPICKMPLP 72 (99)
T ss_dssp CCCCCCSSCSCCSS--EE-ECS----SCEEEHHHHHHTCSSSS--EETTTTEECC
T ss_pred CcccChhhccccCC--ee-eec----chhhHHHHHHHHHhhcc--CCcccCCcCC
Confidence 34678889776653 44 454 47888899988777655 8999999874
No 80
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=46.07 E-value=17 Score=23.23 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=21.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHH
Q 045467 187 ALPVNIIIGVIVVLGLGTALRLALEFC 213 (237)
Q Consensus 187 alPf~~iiGllv~~~~gt~vr~~l~~~ 213 (237)
++.+++++|++-...+|.++-.++.+.
T Consensus 4 ~lL~GIVlGlipvtlaGLfv~Ay~Qyr 30 (37)
T 1q90_G 4 PLLCGIVLGLVPVTIAGLFVTAYLQYL 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhHHHhhHHHHHHHHHHHHHHHHh
Confidence 466889999998888888887666654
No 81
>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=40.21 E-value=30 Score=29.09 Aligned_cols=17 Identities=29% Similarity=0.737 Sum_probs=14.0
Q ss_pred ccccchhhHHHHHHHHH
Q 045467 185 VSALPVNIIIGVIVVLG 201 (237)
Q Consensus 185 ~~alPf~~iiGllv~~~ 201 (237)
.-|+|+++.+|++..+.
T Consensus 141 LPALPiSI~lG~~fyf~ 157 (176)
T 2kr6_A 141 LPALPISITFGLVFYFA 157 (176)
T ss_dssp CSSSSSCCCCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 45899999999987665
No 82
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=39.92 E-value=5 Score=28.23 Aligned_cols=52 Identities=13% Similarity=0.198 Sum_probs=32.2
Q ss_pred CCCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHh--cCCcccccCcccc
Q 045467 72 SSHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRT--KGSNKCEICQQVA 126 (237)
Q Consensus 72 s~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~--s~~~~CEiCk~~~ 126 (237)
.+...|.||.....+..++. |.+=-.+.|..|+.--... .+...|+.|....
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~---CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIG---CDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEE---CSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCCcCCCCCCCCCCCCCEEE---cCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 34467889977654434432 3343479999997643322 2567899886543
No 83
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=35.80 E-value=9.4 Score=26.09 Aligned_cols=48 Identities=25% Similarity=0.508 Sum_probs=31.1
Q ss_pred CCCCceeEeccCCCccceeccccccCCCccccHHHHHHHHH--hcCCcccccCccc
Q 045467 72 SSHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFR--TKGSNKCEICQQV 125 (237)
Q Consensus 72 s~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~--~s~~~~CEiCk~~ 125 (237)
.....|.+|.... . ++ - |.+=-+..|..|+.-=+. -++...|..|.+.
T Consensus 9 ~~~~~C~vC~~~g--~-ll-~--CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQGG--E-II-L--CDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCCS--S-EE-E--CSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCCC--c-EE-E--CCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 4567899998743 2 22 2 334446899999875332 2477899999653
No 84
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=35.24 E-value=16 Score=23.37 Aligned_cols=26 Identities=12% Similarity=0.181 Sum_probs=16.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHH
Q 045467 187 ALPVNIIIGVIVVLGLGTALRLALEF 212 (237)
Q Consensus 187 alPf~~iiGllv~~~~gt~vr~~l~~ 212 (237)
++.+.+++|++-...+|.++-.++.+
T Consensus 4 plL~GIVlGlipvtl~GLfv~Ay~Qy 29 (37)
T 1vf5_G 4 PLLDGLVLGLVFATLGGLFYAAYQQY 29 (37)
T ss_dssp -----CHHHHHHHHHHHHTHHHHHHT
T ss_pred hhhhhHHHhhHHHHHHHHHHHHHHHH
Confidence 56788999999888888888766654
No 85
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.62 E-value=4.9 Score=29.87 Aligned_cols=51 Identities=22% Similarity=0.391 Sum_probs=32.5
Q ss_pred CCCCceeEeccCCCccceeccccccCCCccccHHHHHHHH--HhcCCcccccCccc
Q 045467 72 SSHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWF--RTKGSNKCEICQQV 125 (237)
Q Consensus 72 s~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl--~~s~~~~CEiCk~~ 125 (237)
.+...|.||.....++.|+ -| .+=-...|..|+.-=+ .-++.+.|..|...
T Consensus 14 ~~~~~C~vC~~~~~~~~ll-~C--D~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLL-FC--DGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCE-EC--TTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCCCEE-Ec--CCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3457899998876544443 33 2333589999985211 22477899999764
No 86
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=28.62 E-value=15 Score=27.39 Aligned_cols=51 Identities=24% Similarity=0.419 Sum_probs=33.5
Q ss_pred cCCCCCCceeEeccCCCccceeccccccCCCccccHHHHHHHHH--hcCCcccccCccc
Q 045467 69 RTASSHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFR--TKGSNKCEICQQV 125 (237)
Q Consensus 69 ~~~s~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~--~s~~~~CEiCk~~ 125 (237)
........|.+|..+. ..+ - |.+=-+..|..|+.-=+. -++.+.|..|...
T Consensus 20 ~~d~n~~~C~vC~~~g--~LL--~--CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 20 TLDDSATICRVCQKPG--DLV--M--CNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSSSCCSSSCSSS--CCE--E--CTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred ccCCCCCcCcCcCCCC--CEE--E--CCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3455678999998664 222 1 445567899999844332 2477899999753
No 87
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=28.14 E-value=25 Score=26.55 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=21.6
Q ss_pred CCCceeEeccCCC------ccceeccccccCCCccccHHHHHH
Q 045467 73 SHEQCRVCQQDKE------EVLIDLGCQCRGGLAKAHRSCINT 109 (237)
Q Consensus 73 ~~~~CRIC~~~~~------~~~l~~PC~CkGsl~~vH~~CL~~ 109 (237)
..++|.+|+...+ .+.|+ .|.+=-...|..||..
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll---~C~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELI---SCADCGNSGHPSCLKF 43 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCE---ECTTTCCEECHHHHTC
T ss_pred cCccccccCCchhhCcCCCchhce---EhhhcCCCCCCchhcC
Confidence 4578999987642 22343 2334446899999953
No 88
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=27.90 E-value=32 Score=27.73 Aligned_cols=47 Identities=26% Similarity=0.444 Sum_probs=32.7
Q ss_pred CCCCCceeEeccCCCccceeccccccCCCccccHHHHHHHHH---------hcCCcccccCc
Q 045467 71 ASSHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFR---------TKGSNKCEICQ 123 (237)
Q Consensus 71 ~s~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~---------~s~~~~CEiCk 123 (237)
+..+..|++|.++.+- + - |.+=-+..|..|+..=+. ..+.+.|..|.
T Consensus 60 Dg~~d~C~vC~~GG~L--l--c--CD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGNL--I--C--CDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp TSCBCSCSSSCCCSSE--E--E--CSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CCCCCeecccCCCCcE--E--e--CCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 3456899999776632 2 2 233346899999996552 46889999995
No 89
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=25.45 E-value=7.9 Score=32.29 Aligned_cols=47 Identities=21% Similarity=0.514 Sum_probs=32.3
Q ss_pred CCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHh--cCCcccccCccc
Q 045467 73 SHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRT--KGSNKCEICQQV 125 (237)
Q Consensus 73 ~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~--s~~~~CEiCk~~ 125 (237)
....|.+|..+++ ++ - |.+--+..|..|+.--+.. +|.+.|..|...
T Consensus 6 ~~~~C~~C~~~g~---ll-~--Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 6 NEDWCAVCQNGGD---LL-C--CEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SCSSBTTTCCCEE---EE-E--CSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCCc---eE-E--cCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 4578999976542 32 2 4455578999998655433 477899999764
No 90
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=25.38 E-value=26 Score=24.38 Aligned_cols=33 Identities=21% Similarity=0.585 Sum_probs=19.8
Q ss_pred CCCCCceeEeccCCCc-cceeccc--cccCCCccccHHHH
Q 045467 71 ASSHEQCRVCQQDKEE-VLIDLGC--QCRGGLAKAHRSCI 107 (237)
Q Consensus 71 ~s~~~~CRIC~~~~~~-~~l~~PC--~CkGsl~~vH~~CL 107 (237)
+.....|-+|...... ..+ --| .|+ .+.|..|+
T Consensus 5 ~~~~~~C~~C~~p~~~~~~m-I~CD~~C~---~WfH~~Cv 40 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDA-ILCEASCQ---KWFHRICT 40 (65)
T ss_dssp ----CBCTTTCSBCCTTSCE-EEBTTTTC---CEEEHHHH
T ss_pred CCCcCcCccCCCccCCCCCe-EecccCcc---ccCchhcc
Confidence 4455789999887543 333 355 353 78999995
No 91
>1v54_I STA, cytochrome C oxidase polypeptide VIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.3.1 PDB: 1oco_I* 1occ_I* 1ocz_I* 1ocr_I* 1v55_I* 2dyr_I* 2dys_I* 2eij_I* 2eik_I* 2eil_I* 2eim_I* 2ein_I* 2occ_I* 2ybb_T* 2zxw_I* 3abk_I* 3abl_I* 3abm_I* 3ag1_I* 3ag2_I* ...
Probab=24.33 E-value=95 Score=22.39 Aligned_cols=20 Identities=10% Similarity=0.297 Sum_probs=15.1
Q ss_pred HHHHHHHHhhhhhhHHhhhh
Q 045467 207 RLALEFCREWSLRRVVQRVE 226 (237)
Q Consensus 207 r~~l~~~~~w~~~~~i~~~~ 226 (237)
+.+.+|+++...-..+.+|.
T Consensus 45 ~aYadFYknYD~~k~ferMk 64 (73)
T 1v54_I 45 KAYADFYRNYDSMKDFEEMR 64 (73)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHH
Confidence 37899998888866666654
No 92
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=24.13 E-value=17 Score=27.70 Aligned_cols=33 Identities=15% Similarity=0.348 Sum_probs=20.5
Q ss_pred CceeEeccCCCc-------cceeccccccCCCccccHHHHHHH
Q 045467 75 EQCRVCQQDKEE-------VLIDLGCQCRGGLAKAHRSCINTW 110 (237)
Q Consensus 75 ~~CRIC~~~~~~-------~~l~~PC~CkGsl~~vH~~CL~~W 110 (237)
+.|.||+.+... +.|+ -|. +=-...|..||...
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li-~C~--~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELV-SCA--DCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCE-ECS--SSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCe-EeC--CCCCccchhhCCCh
Confidence 579999876521 2343 332 22357899999865
No 93
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=23.97 E-value=53 Score=25.24 Aligned_cols=34 Identities=15% Similarity=0.362 Sum_probs=26.5
Q ss_pred ccccccCCCccccHHHHHHHHHhcCCcccccCcccccccc
Q 045467 91 LGCQCRGGLAKAHRSCINTWFRTKGSNKCEICQQVAVNVP 130 (237)
Q Consensus 91 ~PC~CkGsl~~vH~~CL~~Wl~~s~~~~CEiCk~~~~~v~ 130 (237)
.||+ ...=..|+..|-+. +.++|..|+..+..+.
T Consensus 18 IPCk-----HvFCydCa~~~~~~-~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 18 IPCK-----HVFCYDCAILHEKK-GDKMCPGCSDPVQRIE 51 (101)
T ss_dssp ETTC-----CEEEHHHHHHHHHT-TCCBCTTTCCBCSEEE
T ss_pred cccc-----ccHHHHHHHHHHhc-cCCCCcCcCCeeeeeE
Confidence 5988 46778899998776 4458999999887663
No 94
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=22.53 E-value=29 Score=17.49 Aligned_cols=11 Identities=36% Similarity=0.981 Sum_probs=8.9
Q ss_pred ccccCcccccc
Q 045467 118 KCEICQQVAVN 128 (237)
Q Consensus 118 ~CEiCk~~~~~ 128 (237)
.|++|+..|..
T Consensus 3 ~C~~C~k~f~~ 13 (27)
T 1znf_A 3 KCGLCERSFVE 13 (27)
T ss_dssp BCSSSCCBCSS
T ss_pred cCCCCCCcCCC
Confidence 69999988854
No 95
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=20.89 E-value=31 Score=17.52 Aligned_cols=12 Identities=25% Similarity=0.684 Sum_probs=9.5
Q ss_pred cccccCcccccc
Q 045467 117 NKCEICQQVAVN 128 (237)
Q Consensus 117 ~~CEiCk~~~~~ 128 (237)
-.|++|+..|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 469999998854
No 96
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=20.31 E-value=12 Score=30.49 Aligned_cols=47 Identities=28% Similarity=0.577 Sum_probs=31.9
Q ss_pred CCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHh--cCCcccccCccc
Q 045467 73 SHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRT--KGSNKCEICQQV 125 (237)
Q Consensus 73 ~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~--s~~~~CEiCk~~ 125 (237)
..+.|.+|..+++ + .- |.+--...|..|+.--+.. +|.+.|..|...
T Consensus 3 ~~~~C~~C~~~g~---l-l~--Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 3 NEDWCAVCQNGGE---L-LC--CEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp SCSSCTTTCCCSS---C-EE--CSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCccccCCCCCe---e-ee--cCCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 3578999986543 2 22 3444578999998655443 477999999754
No 97
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=20.18 E-value=11 Score=25.66 Aligned_cols=47 Identities=30% Similarity=0.584 Sum_probs=27.9
Q ss_pred CCCCceeEeccCCCccceeccccccCCCccccHHHHHHHHHh--cCCcccccCcc
Q 045467 72 SSHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFRT--KGSNKCEICQQ 124 (237)
Q Consensus 72 s~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~~--s~~~~CEiCk~ 124 (237)
.+...|.+|.... + .+ - |.+=-...|..|+.-=+.. ++.+.|..|..
T Consensus 7 ~~~~~C~vC~~~g-~-ll--~--Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 55 (61)
T 1mm2_A 7 HHMEFCRVCKDGG-E-LL--C--CDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTC 55 (61)
T ss_dssp SSCSSCTTTCCCS-S-CB--C--CSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTT
T ss_pred CCCCcCCCCCCCC-C-EE--E--cCCCCHHHcccccCCCcCcCCCCccCChhhcC
Confidence 3567899997643 2 22 2 2333456899997632222 36678888854
No 98
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.11 E-value=30 Score=17.61 Aligned_cols=12 Identities=25% Similarity=0.689 Sum_probs=9.6
Q ss_pred cccccCcccccc
Q 045467 117 NKCEICQQVAVN 128 (237)
Q Consensus 117 ~~CEiCk~~~~~ 128 (237)
..|+.|+..|..
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvh_A 4 FSCSLCPQRSRD 15 (27)
T ss_dssp EECSSSSCEESS
T ss_pred ccCCCcChhhCC
Confidence 479999998854
No 99
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=20.08 E-value=11 Score=26.03 Aligned_cols=47 Identities=30% Similarity=0.703 Sum_probs=29.6
Q ss_pred CCCCceeEeccCCCccceeccccccCCCccccHHHHHHHHH--hcCCcccccCcc
Q 045467 72 SSHEQCRVCQQDKEEVLIDLGCQCRGGLAKAHRSCINTWFR--TKGSNKCEICQQ 124 (237)
Q Consensus 72 s~~~~CRIC~~~~~~~~l~~PC~CkGsl~~vH~~CL~~Wl~--~s~~~~CEiCk~ 124 (237)
.....|.||.... ..+ - |.+=-...|..|+.-=+. -++.+.|..|..
T Consensus 6 ~~~~~C~vC~~~g--~ll--~--CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDGG--ELI--C--CDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCCS--SCE--E--CSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCCC--CEE--E--cCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 4568899998653 222 2 334446789999763222 246788988864
No 100
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=20.03 E-value=10 Score=27.89 Aligned_cols=51 Identities=18% Similarity=0.269 Sum_probs=34.4
Q ss_pred CCceeEeccCCC--ccceeccccccCCCccccHHHHHHHHH------hcCCcccccCccccc
Q 045467 74 HEQCRVCQQDKE--EVLIDLGCQCRGGLAKAHRSCINTWFR------TKGSNKCEICQQVAV 127 (237)
Q Consensus 74 ~~~CRIC~~~~~--~~~l~~PC~CkGsl~~vH~~CL~~Wl~------~s~~~~CEiCk~~~~ 127 (237)
...|.+|..... ++.|+. |.+=-...|..|+.-=+. -++.+.|..|.....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~---CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVE---CQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEE---CSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCcCCCCCCCCCCCCCceEE---CCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 578999988753 234432 333346789999875543 357899999977654
No 101
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=24.58 E-value=23 Score=17.91 Aligned_cols=13 Identities=31% Similarity=0.524 Sum_probs=10.0
Q ss_pred cccccCccccccc
Q 045467 117 NKCEICQQVAVNV 129 (237)
Q Consensus 117 ~~CEiCk~~~~~v 129 (237)
-.|++|+..|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 3 YVCERCGKRFVQS 15 (26)
Confidence 3699999988653
Done!