BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045468
(221 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZQ4|A Chain A, Unusual, Dual Endo- And Exo-Nuclease Activity In The
Degradosome Explained By Crystal Structure Analysis Of
Rnase J1
pdb|3ZQ4|C Chain C, Unusual, Dual Endo- And Exo-Nuclease Activity In The
Degradosome Explained By Crystal Structure Analysis Of
Rnase J1
pdb|3ZQ4|D Chain D, Unusual, Dual Endo- And Exo-Nuclease Activity In The
Degradosome Explained By Crystal Structure Analysis Of
Rnase J1
pdb|3ZQ4|E Chain E, Unusual, Dual Endo- And Exo-Nuclease Activity In The
Degradosome Explained By Crystal Structure Analysis Of
Rnase J1
Length = 555
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 117/217 (53%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
++SDSTN +P T SE V +++ GR+I FASNIHRL V AA GRK
Sbjct: 192 LLSDSTNSENPEFTMSERRVGESIHDIFRKVDGRIIFATFASNIHRLQQVIEAAVQNGRK 251
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+ G S+ + ++ G +T ++ +I+ + I+ TGSQ EP AAL+
Sbjct: 252 VAVFGRSMESAIEIGQTLGYINCPKNTFIEHNEINRMPANKVTILCTGSQGEPMAALSRI 311
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR 180
+ G + + D +++S+ IPGN V + +N++ G+ ++ G +HTSGHG +
Sbjct: 312 ANGTHRQISINPGDTVVFSSSPIPGNTISVSRTINQLYRAGAEVIHGPLNDIHTSGHGGQ 371
Query: 181 GELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGI 217
E + +L+L+KP+ F+PIHGE K H L GI
Sbjct: 372 EEQKLMLRLIKPKFFMPIHGEYRMQKMHVKLATDCGI 408
>pdb|3T3N|A Chain A, Molecular Basis For The Recognition And Cleavage Of Rna
(Uuccgu) By The Bifunctional 5'-3' ExoENDORIBONUCLEASE
RNASE J
pdb|3T3O|A Chain A, Molecular Basis For The Recognition And Cleavage Of Rna
(Cugg) By The Bifunctional 5'-3' ExoENDORIBONUCLEASE
RNASE J
Length = 562
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 112/202 (55%), Gaps = 1/202 (0%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
+++D+TN PG T SE + L R + A GRV T FAS+IHR+ SV AA+ GRK
Sbjct: 209 LIADATNAERPGYTPSEMEIAKELDRVIGRAPGRVFVTTFASHIHRIQSVIWAAEKYGRK 268
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+ G S+ + A + G + L +E++ +LI+ TGSQ +P + L+
Sbjct: 269 VAMEGRSMLKFSRIALELGYLKVK-DRLYTLEEVKDLPDHQVLILATGSQGQPMSVLHRL 327
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR 180
++ G + + D ++ S+ IPGNE V +++NR+ +G+ ++ +H SGH +
Sbjct: 328 AFEGHAKMAIKPGDTVILSSSPIPGNEEAVNRVINRLYALGAYVLYPPTYKVHASGHASQ 387
Query: 181 GELEEVLKLVKPQHFLPIHGEL 202
EL+ +L L P+ FLP HGE+
Sbjct: 388 EELKLILNLTTPRFFLPWHGEV 409
>pdb|3BK1|A Chain A, Crystal Structure Analysis Of Rnase J
pdb|3BK2|A Chain A, Crystal Structure Analysis Of The Rnase JUMP COMPLEX
Length = 562
Score = 120 bits (300), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 110/202 (54%), Gaps = 1/202 (0%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
+++D+TN PG T SE + L R + A GRV T FAS+IHR+ SV AA+ GRK
Sbjct: 208 LIADATNAERPGYTPSEXEIAKELDRVIGRAPGRVFVTTFASHIHRIQSVIWAAEKYGRK 267
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+ G S + A + G + L +E++ +LI+ TGSQ +P + L+
Sbjct: 268 VAXEGRSXLKFSRIALELGYLKVK-DRLYTLEEVKDLPDHQVLILATGSQGQPXSVLHRL 326
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR 180
++ G + D ++ S+ IPGNE V +++NR+ +G+ ++ +H SGH +
Sbjct: 327 AFEGHAKXAIKPGDTVILSSSPIPGNEEAVNRVINRLYALGAYVLYPPTYKVHASGHASQ 386
Query: 181 GELEEVLKLVKPQHFLPIHGEL 202
EL+ +L L P+ FLP HGE+
Sbjct: 387 EELKLILNLTTPRFFLPWHGEV 408
>pdb|3MIL|A Chain A, Crystal Structure Of Isoamyl Acetate-Hydrolyzing Esterase
From Saccharomyces Cerevisiae
pdb|3MIL|B Chain B, Crystal Structure Of Isoamyl Acetate-Hydrolyzing Esterase
From Saccharomyces Cerevisiae
Length = 240
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 131 TNEDVILYSAKVIP-GNESRV-MKMLNRI--SEIGSTIVMGRNEGLHTSGHGYRGELEEV 186
TNE+ +YS + NE +V LN+ E G +GLH SG GY+ +E+
Sbjct: 144 TNENFAIYSDALAKLANEEKVPFVALNKAFQQEGGDAWQQLLTDGLHFSGKGYKIFHDEL 203
Query: 187 LKLVK---PQH 194
LK+++ PQ+
Sbjct: 204 LKVIETFYPQY 214
>pdb|3A9G|A Chain A, Crystal Structure Of Pqq-Dependent Sugar Dehydrogenase
Apo-Form
pdb|3A9H|A Chain A, Crystal Structure Of Pqq-Dependent Sugar Dehydrogenase
Holo-Form
Length = 354
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 97 YAPKDLLIVTTGSQAEPRAALNLASYGG 124
+ P +L +TTG A+PR A +L+S G
Sbjct: 142 FGPDGMLYITTGDAADPRLAQDLSSLAG 169
>pdb|2ISM|A Chain A, Crystal Structure Of The Putative Oxidoreductase (Glucose
Dehydrogenase) (Ttha0570) From Thermus Theromophilus Hb8
pdb|2ISM|B Chain B, Crystal Structure Of The Putative Oxidoreductase (Glucose
Dehydrogenase) (Ttha0570) From Thermus Theromophilus Hb8
Length = 352
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 96 AYAPKDLLIVTTGSQAEPRAALNLASYGGSHSLKLTNEDVILYSAKVIPGN 146
A+ P +L VTTG E A +LAS GG L+LT E + PGN
Sbjct: 141 AFGPDGMLYVTTGEVYERELAQDLASLGGK-ILRLTPE------GEPAPGN 184
>pdb|2AZ4|A Chain A, Crystal Structure Of A Protein Of Unknown Function From
Enterococcus Faecalis V583
pdb|2AZ4|B Chain B, Crystal Structure Of A Protein Of Unknown Function From
Enterococcus Faecalis V583
Length = 429
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 172 LHTSGHGYRGELEEVLKLVKPQHFLPIH 199
L SGH +L++++ L++PQ +PIH
Sbjct: 377 LACSGHAIPEDLDKIIALIEPQVLVPIH 404
>pdb|3PST|A Chain A, Crystal Structure Of Pul And Pfu(Mutate) Domain
Length = 425
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 10 SPGRTTSESVVKDALMRHVSAAKGRVITTQFA-SNIHRLGSV-KAAADLTGRKLVFVGMS 67
SPGR + VV V + +G + QF+ S+ ++G V A A +K+ F G +
Sbjct: 42 SPGRKEGQIVV-------VKSPQGTIEAHQFSNSSWKKVGDVVGAGATGNDKKIEFEGKT 94
Query: 68 LRTYLDAAWKDGKAPI 83
D +DGK P+
Sbjct: 95 YDYVFDVDIEDGKPPL 110
>pdb|3PSP|A Chain A, Crystal Structure Of Pul And Pfu Domain
Length = 425
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 10 SPGRTTSESVVKDALMRHVSAAKGRVITTQFA-SNIHRLGSV-KAAADLTGRKLVFVGMS 67
SPGR + VV V + +G + QF+ S+ ++G V A A +K+ F G +
Sbjct: 42 SPGRKEGQIVV-------VKSPQGTIEAHQFSNSSWKKVGDVVGAGATGNDKKIEFEGKT 94
Query: 68 LRTYLDAAWKDGKAPI 83
D +DGK P+
Sbjct: 95 YDYVFDVDIEDGKPPL 110
>pdb|2E4O|A Chain A, X-Ray Crystal Structure Of Aristolochene Synthase From
Aspergillus Terreus And The Evolution Of Templates For
The Cyclization Of Farnesyl Diphosphate
pdb|2E4O|B Chain B, X-Ray Crystal Structure Of Aristolochene Synthase From
Aspergillus Terreus And The Evolution Of Templates For
The Cyclization Of Farnesyl Diphosphate
pdb|2E4O|C Chain C, X-Ray Crystal Structure Of Aristolochene Synthase From
Aspergillus Terreus And The Evolution Of Templates For
The Cyclization Of Farnesyl Diphosphate
pdb|2E4O|D Chain D, X-Ray Crystal Structure Of Aristolochene Synthase From
Aspergillus Terreus And The Evolution Of Templates For
The Cyclization Of Farnesyl Diphosphate
pdb|2OA6|A Chain A, Aristolochene Synthase From Aspergillus Terreus Complexed
With Pyrophosphate
pdb|2OA6|B Chain B, Aristolochene Synthase From Aspergillus Terreus Complexed
With Pyrophosphate
pdb|2OA6|C Chain C, Aristolochene Synthase From Aspergillus Terreus Complexed
With Pyrophosphate
pdb|2OA6|D Chain D, Aristolochene Synthase From Aspergillus Terreus Complexed
With Pyrophosphate
pdb|3BNX|A Chain A, Crystal Structure Of Aristolochene Synthase Complexed With
Farnesyl Diphosphate
pdb|3BNX|B Chain B, Crystal Structure Of Aristolochene Synthase Complexed With
Farnesyl Diphosphate
pdb|3BNX|C Chain C, Crystal Structure Of Aristolochene Synthase Complexed With
Farnesyl Diphosphate
pdb|3BNX|D Chain D, Crystal Structure Of Aristolochene Synthase Complexed With
Farnesyl Diphosphate
pdb|3BNY|A Chain A, Crystal Structure Of Aristolochene Synthase Complexed With
2-Fluorofarnesyl Diphosphate (2f-Fpp)
pdb|3BNY|B Chain B, Crystal Structure Of Aristolochene Synthase Complexed With
2-Fluorofarnesyl Diphosphate (2f-Fpp)
pdb|3BNY|C Chain C, Crystal Structure Of Aristolochene Synthase Complexed With
2-Fluorofarnesyl Diphosphate (2f-Fpp)
pdb|3BNY|D Chain D, Crystal Structure Of Aristolochene Synthase Complexed With
2-Fluorofarnesyl Diphosphate (2f-Fpp)
pdb|3CKE|A Chain A, Crystal Structure Of Aristolochene Synthase In Complex
With 12,13- Difluorofarnesyl Diphosphate
pdb|3CKE|B Chain B, Crystal Structure Of Aristolochene Synthase In Complex
With 12,13- Difluorofarnesyl Diphosphate
pdb|3CKE|C Chain C, Crystal Structure Of Aristolochene Synthase In Complex
With 12,13- Difluorofarnesyl Diphosphate
pdb|3CKE|D Chain D, Crystal Structure Of Aristolochene Synthase In Complex
With 12,13- Difluorofarnesyl Diphosphate
Length = 320
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 83 IDPSTLVKVEDIDAYAPKDLLIVTT--GSQAEPRAALNLASYGGSHSLKLTNEDVILYSA 140
+ PS L +V +IDA K L +V + E + S GG + T+ ++ A
Sbjct: 196 LSPSELQRVREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGG---ILCTSVQILAQEA 252
Query: 141 KVIPGNESRVMKMLNRISEIGSTIVMGR--NEGLHTSG 176
V RV+ ++ R E+ +++ R EGL T G
Sbjct: 253 DVTAEAAKRVLFVMCREWELRHQLLVARLSAEGLETPG 290
>pdb|3JW5|A Chain A, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
Trimethoprim
pdb|3JW5|B Chain B, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
Trimethoprim
pdb|3JWC|A Chain A, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
2,4-Diamino-5-(3-(3,4,5-
Trimethoxyphenyl)prop-1-Ynyl)-6-Ethylpyrimidine
(Ucp120a)
pdb|3JWC|B Chain B, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
2,4-Diamino-5-(3-(3,4,5-
Trimethoxyphenyl)prop-1-Ynyl)-6-Ethylpyrimidine
(Ucp120a)
pdb|3JWF|A Chain A, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
(R)-2,4-Diamino-5-(3-Hydroxy-3-(3,
4,5-Trimethoxyphenyl)prop-1-Ynyl)-6-Methylpyrimidine
(Ucp113a)
pdb|3JWF|B Chain B, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
(R)-2,4-Diamino-5-(3-Hydroxy-3-(3,
4,5-Trimethoxyphenyl)prop-1-Ynyl)-6-Methylpyrimidine
(Ucp113a)
pdb|3JWK|A Chain A, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
(S)-2,4-Diamino-5-(3-Methoxy-3-(3,
4,5-Trimethoxyphenyl)prop-1-Ynyl)-6-Methylpyrimidine
(Ucp114a)
pdb|3JWK|B Chain B, Crystal Structure Of Bacillus Anthracis (Y102f)
Dihydrofolate Reductase Complexed With Nadph And
(S)-2,4-Diamino-5-(3-Methoxy-3-(3,
4,5-Trimethoxyphenyl)prop-1-Ynyl)-6-Methylpyrimidine
(Ucp114a)
Length = 168
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 163 TIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHG 200
I++ RNEG H G +EEV +L K + + I G
Sbjct: 66 NIIVTRNEGYHVEGCEVAHSVEEVFELCKNEEEIFIFG 103
>pdb|2QK8|A Chain A, Crystal Structure Of The Anthrax Drug Target, Bacillus
Anthracis Dihydrofolate Reductase
pdb|3DAT|A Chain A, Crystal Structure Of The Ternary Mtx Nadph Complex Of
Bacillus Anthracis Dihydrofolate Reductase
Length = 162
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 163 TIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHG 200
I++ RNEG H G +EEV +L K + + I G
Sbjct: 60 NIIVTRNEGYHVEGCEVAHSVEEVFELCKNEEEIFIFG 97
>pdb|2KGK|A Chain A, Solution Structure Of Bacillus Anthracis Dihydrofolate
Reductase
Length = 172
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 163 TIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHG 200
I++ RNEG H G +EEV +L K + + I G
Sbjct: 60 NIIVTRNEGYHVEGCEVAHSVEEVFELCKNEEEIFIFG 97
>pdb|3JVX|A Chain A, Crystal Structure Of Bacillus Anthracis Dihydrofolate
Reductase Complexed With Nadph And
2,4-Diamino-5-(3-(3,4,5-Trimethoxyphenyl)
Prop-1-Ynyl)-6-Ethylpyrimidine (Ucp120a)
pdb|3JVX|B Chain B, Crystal Structure Of Bacillus Anthracis Dihydrofolate
Reductase Complexed With Nadph And
2,4-Diamino-5-(3-(3,4,5-Trimethoxyphenyl)
Prop-1-Ynyl)-6-Ethylpyrimidine (Ucp120a)
pdb|3JWM|A Chain A, Crystal Structure Of Bacillus Anthracis Dihydrofolate
Reductase Complexed With Nadph And
(S)-2,4-Diamino-5-(3-Methoxy-3-(3,4,5-
Trimethoxyphenyl)prop-1-Ynyl)-6-Methylpyrimidine
(Ucp114a)
pdb|3JWM|B Chain B, Crystal Structure Of Bacillus Anthracis Dihydrofolate
Reductase Complexed With Nadph And
(S)-2,4-Diamino-5-(3-Methoxy-3-(3,4,5-
Trimethoxyphenyl)prop-1-Ynyl)-6-Methylpyrimidine
(Ucp114a)
Length = 168
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 163 TIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHG 200
I++ RNEG H G +EEV +L K + + I G
Sbjct: 66 NIIVTRNEGYHVEGCEVAHSVEEVFELCKNEEEIFIFG 103
>pdb|3FL8|A Chain A, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Rab1, A Tmp-Dihydrophthalazine Derivative
pdb|3FL8|B Chain B, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Rab1, A Tmp-Dihydrophthalazine Derivative
pdb|3FL8|C Chain C, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Rab1, A Tmp-Dihydrophthalazine Derivative
pdb|3FL8|D Chain D, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Rab1, A Tmp-Dihydrophthalazine Derivative
pdb|3FL8|E Chain E, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Rab1, A Tmp-Dihydrophthalazine Derivative
pdb|3FL8|F Chain F, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Rab1, A Tmp-Dihydrophthalazine Derivative
pdb|3FL8|G Chain G, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Rab1, A Tmp-Dihydrophthalazine Derivative
pdb|3FL8|H Chain H, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Rab1, A Tmp-Dihydrophthalazine Derivative
pdb|3FL9|A Chain A, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Trimethoprim
pdb|3FL9|B Chain B, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Trimethoprim
pdb|3FL9|C Chain C, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Trimethoprim
pdb|3FL9|D Chain D, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Trimethoprim
pdb|3FL9|E Chain E, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Trimethoprim
pdb|3FL9|F Chain F, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Trimethoprim
pdb|3FL9|G Chain G, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Trimethoprim
pdb|3FL9|H Chain H, Crystal Structure Of B. Anthracis Dihydrofolate Reductase
(Dhfr) With Trimethoprim
pdb|4ELB|A Chain A, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELB|H Chain H, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELB|C Chain C, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELB|B Chain B, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELB|G Chain G, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELB|F Chain F, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELB|D Chain D, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELB|E Chain E, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|A Chain A, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|B Chain B, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|C Chain C, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|D Chain D, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|E Chain E, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|F Chain F, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|G Chain G, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELE|H Chain H, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|A Chain A, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|B Chain B, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|C Chain C, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|D Chain D, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|E Chain E, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|F Chain F, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|G Chain G, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELF|H Chain H, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|A Chain A, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|B Chain B, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|C Chain C, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|D Chain D, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|E Chain E, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|F Chain F, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|G Chain G, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELG|H Chain H, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|A Chain A, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|H Chain H, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|C Chain C, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|B Chain B, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|G Chain G, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|F Chain F, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|D Chain D, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
pdb|4ELH|E Chain E, Structure-activity Relationship Guides Enantiomeric
Preference Among Potent Inhibitors Of B. Anthracis
Dihydrofolate Reductase
Length = 166
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 163 TIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHG 200
I++ RNEG H G +EEV +L K + + I G
Sbjct: 60 NIIVTRNEGYHVEGCEVAHSVEEVFELCKNEEEIFIFG 97
>pdb|3BCQ|B Chain B, Crystal Structure Of Oxy-Hemoglobin From Brycon Cephalus
pdb|3BCQ|D Chain D, Crystal Structure Of Oxy-Hemoglobin From Brycon Cephalus
Length = 146
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 89 VKVEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGGSHSLKLTNEDVILYSAKVIPGNES 148
+ V++I A LLIV +Q A NL+S + + + KV+ G
Sbjct: 18 ISVDEIGPQALSRLLIVYPWTQRHFAAFGNLSSPAA-----INGNPKVAHHGKVVMGGLE 72
Query: 149 RVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR 180
R +K ++ I S++ + +E LH +R
Sbjct: 73 RAIKNMDNIKAAYSSLSVMHSEKLHVDPDNFR 104
>pdb|2ZKR|JJ Chain j, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 203
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 160 IGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGELLFLKEHELLGRST 215
+G +V+ R EG++ SG+ YR +L + L K + P G F + R+
Sbjct: 29 LGRKVVVVRCEGINISGNFYRNKLNYLAFLRKRMNTNPSRGPYDFRAPSRIFWRTV 84
>pdb|3S9U|A Chain A, Bacillus Anthracis Dihydrofolate Reductase Bound To
Propargyl-Linked Tmp Analog, Ucp120j
pdb|3S9U|B Chain B, Bacillus Anthracis Dihydrofolate Reductase Bound To
Propargyl-Linked Tmp Analog, Ucp120j
pdb|3SA1|A Chain A, Bacuills Anthracis Dihydrofolate Reductase Bound
Propargyl-Linked Tmp Analog, Ucp1021
pdb|3SA1|B Chain B, Bacuills Anthracis Dihydrofolate Reductase Bound
Propargyl-Linked Tmp Analog, Ucp1021
pdb|3SA2|A Chain A, Bacuills Anthracis Dihydrofolate Reductase Bound
Propargyl-Linked Tmp Analog, Ucp1014
pdb|3SA2|B Chain B, Bacuills Anthracis Dihydrofolate Reductase Bound
Propargyl-Linked Tmp Analog, Ucp1014
pdb|3SAI|A Chain A, Bacuills Anthracis Dihydrofolate Reductase Bound To
Propargyl-Linked Tmp Analog, Ucp1015
pdb|3SAI|B Chain B, Bacuills Anthracis Dihydrofolate Reductase Bound To
Propargyl-Linked Tmp Analog, Ucp1015
Length = 165
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 163 TIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHG 200
I++ RNEG H G +EEV +L K + + I G
Sbjct: 63 NIIVTRNEGYHVEGCEVAHSVEEVFELCKNEEEIFIFG 100
>pdb|3E0B|A Chain A, Bacillus Anthracis Dihydrofolate Reductase Complexed With
Nadph And 2,4-Diamino-5-(3-(2,5-Dimethoxyphenyl)prop-1-
Ynyl)-6-Ethylpyrimidine (Ucp120b)
pdb|3E0B|B Chain B, Bacillus Anthracis Dihydrofolate Reductase Complexed With
Nadph And 2,4-Diamino-5-(3-(2,5-Dimethoxyphenyl)prop-1-
Ynyl)-6-Ethylpyrimidine (Ucp120b)
Length = 166
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 163 TIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHG 200
I++ RNEG H G +EEV +L K + + I G
Sbjct: 64 NIIVTRNEGYHVEGCEVAHSVEEVFELCKNEEEIFIFG 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,179,198
Number of Sequences: 62578
Number of extensions: 244249
Number of successful extensions: 608
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 590
Number of HSP's gapped (non-prelim): 24
length of query: 221
length of database: 14,973,337
effective HSP length: 95
effective length of query: 126
effective length of database: 9,028,427
effective search space: 1137581802
effective search space used: 1137581802
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)