BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045468
(221 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54122|RNJ_CORGL Ribonuclease J OS=Corynebacterium glutamicum (strain ATCC 13032 /
DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
GN=Cgl1970 PE=3 SV=2
Length = 718
Score = 150 bits (378), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 132/217 (60%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
M+ DSTN +PG + SE+ V L R V AK RVI FASN++R+ + AA + RK
Sbjct: 338 MLCDSTNATTPGVSGSEADVAPTLKRLVGDAKQRVILASFASNVYRVQAAVDAAVASNRK 397
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+ F G S+ ++ A K G T++ ++D AP ++++TTG+Q EP AAL+
Sbjct: 398 VAFNGRSMIRNMEIAEKLGYLKAPRGTIISMDDASRMAPHKVMLITTGTQGEPMAALSRM 457
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR 180
+ + + + D+I+ S+ ++PGNE V ++N +++IG+T+V GR+ +HTSGHGY
Sbjct: 458 ARREHRQITVRDGDLIILSSSLVPGNEEAVFGVINMLAQIGATVVTGRDAKVHTSGHGYS 517
Query: 181 GELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGI 217
GEL + +P++ +P+HGE L+ ++ L STG+
Sbjct: 518 GELLFLYNAARPKNAMPVHGEWRHLRANKELAISTGV 554
>sp|Q7A171|RNJ1_STAAW Ribonuclease J 1 OS=Staphylococcus aureus (strain MW2) GN=MW0972
PE=3 SV=1
Length = 565
Score = 147 bits (370), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 121/218 (55%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
++SDSTN L P T SE V + + KGR+I FASNI+R+ AA RK
Sbjct: 192 LLSDSTNSLVPDFTLSEREVGQNVDKIFRNCKGRIIFATFASNIYRVQQAVEAAIKNNRK 251
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+V G S+ + + G P T ++ I+ +LLI+ TGSQ EP AAL+
Sbjct: 252 IVTFGRSMENNIKIGMELGYIKAPPETFIEPNKINTVPKHELLILCTGSQGEPMAALSRI 311
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR 180
+ G +K+ ED +++S+ IPGN + + +N + + G+ ++ + +HTSGHG +
Sbjct: 312 ANGTHKQIKIIPEDTVVFSSSPIPGNTKSINRTINSLYKAGADVIHSKISNIHTSGHGSQ 371
Query: 181 GELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGIR 218
G+ + +L+L+KP++FLPIHGE LK H G G+
Sbjct: 372 GDQQLMLRLIKPKYFLPIHGEYRMLKAHGETGVECGVE 409
>sp|Q6GAC5|RNJ1_STAAS Ribonuclease J 1 OS=Staphylococcus aureus (strain MSSA476)
GN=SAS1024 PE=3 SV=1
Length = 565
Score = 147 bits (370), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 121/218 (55%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
++SDSTN L P T SE V + + KGR+I FASNI+R+ AA RK
Sbjct: 192 LLSDSTNSLVPDFTLSEREVGQNVDKIFRNCKGRIIFATFASNIYRVQQAVEAAIKNNRK 251
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+V G S+ + + G P T ++ I+ +LLI+ TGSQ EP AAL+
Sbjct: 252 IVTFGRSMENNIKIGMELGYIKAPPETFIEPNKINTVPKHELLILCTGSQGEPMAALSRI 311
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR 180
+ G +K+ ED +++S+ IPGN + + +N + + G+ ++ + +HTSGHG +
Sbjct: 312 ANGTHKQIKIIPEDTVVFSSSPIPGNTKSINRTINSLYKAGADVIHSKISNIHTSGHGSQ 371
Query: 181 GELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGIR 218
G+ + +L+L+KP++FLPIHGE LK H G G+
Sbjct: 372 GDQQLMLRLIKPKYFLPIHGEYRMLKAHGETGVECGVE 409
>sp|Q6GHZ6|RNJ1_STAAR Ribonuclease J 1 OS=Staphylococcus aureus (strain MRSA252)
GN=SAR1063 PE=1 SV=1
Length = 565
Score = 147 bits (370), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 121/218 (55%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
++SDSTN L P T SE V + + KGR+I FASNI+R+ AA RK
Sbjct: 192 LLSDSTNSLVPDFTLSEREVGQNVDKIFRNCKGRIIFATFASNIYRVQQAVEAAIKNNRK 251
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+V G S+ + + G P T ++ I+ +LLI+ TGSQ EP AAL+
Sbjct: 252 IVTFGRSMENNIKIGMELGYIKAPPETFIEPNKINTVPKHELLILCTGSQGEPMAALSRI 311
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR 180
+ G +K+ ED +++S+ IPGN + + +N + + G+ ++ + +HTSGHG +
Sbjct: 312 ANGTHKQIKIIPEDTVVFSSSPIPGNTKSINRTINSLYKAGADVIHSKISNIHTSGHGSQ 371
Query: 181 GELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGIR 218
G+ + +L+L+KP++FLPIHGE LK H G G+
Sbjct: 372 GDQQLMLRLIKPKYFLPIHGEYRMLKAHGETGVECGVE 409
>sp|Q7A682|RNJ1_STAAN Ribonuclease J 1 OS=Staphylococcus aureus (strain N315) GN=SA0940
PE=1 SV=1
Length = 565
Score = 147 bits (370), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 121/218 (55%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
++SDSTN L P T SE V + + KGR+I FASNI+R+ AA RK
Sbjct: 192 LLSDSTNSLVPDFTLSEREVGQNVDKIFRNCKGRIIFATFASNIYRVQQAVEAAIKNNRK 251
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+V G S+ + + G P T ++ I+ +LLI+ TGSQ EP AAL+
Sbjct: 252 IVTFGRSMENNIKIGMELGYIKAPPETFIEPNKINTVPKHELLILCTGSQGEPMAALSRI 311
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR 180
+ G +K+ ED +++S+ IPGN + + +N + + G+ ++ + +HTSGHG +
Sbjct: 312 ANGTHKQIKIIPEDTVVFSSSPIPGNTKSINRTINSLYKAGADVIHSKISNIHTSGHGSQ 371
Query: 181 GELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGIR 218
G+ + +L+L+KP++FLPIHGE LK H G G+
Sbjct: 372 GDQQLMLRLIKPKYFLPIHGEYRMLKAHGETGVECGVE 409
>sp|Q99V09|RNJ1_STAAM Ribonuclease J 1 OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=SAV1089 PE=1 SV=1
Length = 565
Score = 147 bits (370), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 121/218 (55%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
++SDSTN L P T SE V + + KGR+I FASNI+R+ AA RK
Sbjct: 192 LLSDSTNSLVPDFTLSEREVGQNVDKIFRNCKGRIIFATFASNIYRVQQAVEAAIKNNRK 251
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+V G S+ + + G P T ++ I+ +LLI+ TGSQ EP AAL+
Sbjct: 252 IVTFGRSMENNIKIGMELGYIKAPPETFIEPNKINTVPKHELLILCTGSQGEPMAALSRI 311
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR 180
+ G +K+ ED +++S+ IPGN + + +N + + G+ ++ + +HTSGHG +
Sbjct: 312 ANGTHKQIKIIPEDTVVFSSSPIPGNTKSINRTINSLYKAGADVIHSKISNIHTSGHGSQ 371
Query: 181 GELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGIR 218
G+ + +L+L+KP++FLPIHGE LK H G G+
Sbjct: 372 GDQQLMLRLIKPKYFLPIHGEYRMLKAHGETGVECGVE 409
>sp|Q5HGZ5|RNJ1_STAAC Ribonuclease J 1 OS=Staphylococcus aureus (strain COL) GN=SACOL1098
PE=3 SV=1
Length = 565
Score = 147 bits (370), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 121/218 (55%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
++SDSTN L P T SE V + + KGR+I FASNI+R+ AA RK
Sbjct: 192 LLSDSTNSLVPDFTLSEREVGQNVDKIFRNCKGRIIFATFASNIYRVQQAVEAAIKNNRK 251
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+V G S+ + + G P T ++ I+ +LLI+ TGSQ EP AAL+
Sbjct: 252 IVTFGRSMENNIKIGMELGYIKAPPETFIEPNKINTVPKHELLILCTGSQGEPMAALSRI 311
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR 180
+ G +K+ ED +++S+ IPGN + + +N + + G+ ++ + +HTSGHG +
Sbjct: 312 ANGTHKQIKIIPEDTVVFSSSPIPGNTKSINRTINSLYKAGADVIHSKISNIHTSGHGSQ 371
Query: 181 GELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGIR 218
G+ + +L+L+KP++FLPIHGE LK H G G+
Sbjct: 372 GDQQLMLRLIKPKYFLPIHGEYRMLKAHGETGVECGVE 409
>sp|Q2FZG9|RNJ1_STAA8 Ribonuclease J 1 OS=Staphylococcus aureus (strain NCTC 8325)
GN=SAOUHSC_01035 PE=3 SV=1
Length = 565
Score = 147 bits (370), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 121/218 (55%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
++SDSTN L P T SE V + + KGR+I FASNI+R+ AA RK
Sbjct: 192 LLSDSTNSLVPDFTLSEREVGQNVDKIFRNCKGRIIFATFASNIYRVQQAVEAAIKNNRK 251
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+V G S+ + + G P T ++ I+ +LLI+ TGSQ EP AAL+
Sbjct: 252 IVTFGRSMENNIKIGMELGYIKAPPETFIEPNKINTVPKHELLILCTGSQGEPMAALSRI 311
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR 180
+ G +K+ ED +++S+ IPGN + + +N + + G+ ++ + +HTSGHG +
Sbjct: 312 ANGTHKQIKIIPEDTVVFSSSPIPGNTKSINRTINSLYKAGADVIHSKISNIHTSGHGSQ 371
Query: 181 GELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGIR 218
G+ + +L+L+KP++FLPIHGE LK H G G+
Sbjct: 372 GDQQLMLRLIKPKYFLPIHGEYRMLKAHGETGVECGVE 409
>sp|Q2FHZ1|RNJ1_STAA3 Ribonuclease J 1 OS=Staphylococcus aureus (strain USA300)
GN=SAUSA300_0989 PE=3 SV=1
Length = 565
Score = 147 bits (370), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 121/218 (55%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
++SDSTN L P T SE V + + KGR+I FASNI+R+ AA RK
Sbjct: 192 LLSDSTNSLVPDFTLSEREVGQNVDKIFRNCKGRIIFATFASNIYRVQQAVEAAIKNNRK 251
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+V G S+ + + G P T ++ I+ +LLI+ TGSQ EP AAL+
Sbjct: 252 IVTFGRSMENNIKIGMELGYIKAPPETFIEPNKINTVPKHELLILCTGSQGEPMAALSRI 311
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR 180
+ G +K+ ED +++S+ IPGN + + +N + + G+ ++ + +HTSGHG +
Sbjct: 312 ANGTHKQIKIIPEDTVVFSSSPIPGNTKSINRTINSLYKAGADVIHSKISNIHTSGHGSQ 371
Query: 181 GELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGIR 218
G+ + +L+L+KP++FLPIHGE LK H G G+
Sbjct: 372 GDQQLMLRLIKPKYFLPIHGEYRMLKAHGETGVECGVE 409
>sp|Q2YX35|RNJ1_STAAB Ribonuclease J 1 OS=Staphylococcus aureus (strain bovine RF122 /
ET3-1) GN=SAB0955c PE=3 SV=1
Length = 565
Score = 147 bits (370), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 121/218 (55%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
++SDSTN L P T SE V + + KGR+I FASNI+R+ AA RK
Sbjct: 192 LLSDSTNSLVPDFTLSEREVGQNVDKIFRNCKGRIIFATFASNIYRVQQAVEAAIKNNRK 251
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+V G S+ + + G P T ++ I+ +LLI+ TGSQ EP AAL+
Sbjct: 252 IVTFGRSMENNIKIGMELGYIKAPPETFIEPNKINTVPKHELLILCTGSQGEPMAALSRI 311
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR 180
+ G +K+ ED +++S+ IPGN + + +N + + G+ ++ + +HTSGHG +
Sbjct: 312 ANGTHKQIKIIPEDTVVFSSSPIPGNTKSINRTINSLYKAGADVIHSKISNIHTSGHGSQ 371
Query: 181 GELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGIR 218
G+ + +L+L+KP++FLPIHGE LK H G G+
Sbjct: 372 GDQQLMLRLIKPKYFLPIHGEYRMLKAHGETGVECGVE 409
>sp|Q8CT16|RNJ1_STAES Ribonuclease J 1 OS=Staphylococcus epidermidis (strain ATCC 12228)
GN=SE_0787 PE=3 SV=1
Length = 560
Score = 146 bits (368), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 122/217 (56%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
++SDSTN L P T SE V + + KGR+I FASNI+R+ AA RK
Sbjct: 192 LLSDSTNALVPDFTLSEREVGQNVDKIFRNCKGRIIFATFASNIYRVQQAVEAAIKYNRK 251
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+V G S+ + + G P T ++ I++ +LLI+ TGSQ EP AAL+
Sbjct: 252 IVTFGRSMENNIKIGMELGYIKAPPETFIEPNKINSVPKHELLILCTGSQGEPMAALSRI 311
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR 180
+ G +K+ ED +++S+ IPGN + + +N + + G+ ++ + +HTSGHG +
Sbjct: 312 ANGTHKQIKIIPEDTVVFSSSPIPGNTKSINRTINALYKAGADVIHSKISNIHTSGHGSQ 371
Query: 181 GELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGI 217
G+ + +L+L++P++FLPIHGE LK H G G+
Sbjct: 372 GDQQLMLRLIQPKYFLPIHGEYRMLKAHGETGVQCGV 408
>sp|Q5HQ80|RNJ1_STAEQ Ribonuclease J 1 OS=Staphylococcus epidermidis (strain ATCC 35984 /
RP62A) GN=SERP0676 PE=3 SV=1
Length = 560
Score = 146 bits (368), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 122/217 (56%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
++SDSTN L P T SE V + + KGR+I FASNI+R+ AA RK
Sbjct: 192 LLSDSTNALVPDFTLSEREVGQNVDKIFRNCKGRIIFATFASNIYRVQQAVEAAIKYNRK 251
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+V G S+ + + G P T ++ I++ +LLI+ TGSQ EP AAL+
Sbjct: 252 IVTFGRSMENNIKIGMELGYIKAPPETFIEPNKINSVPKHELLILCTGSQGEPMAALSRI 311
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR 180
+ G +K+ ED +++S+ IPGN + + +N + + G+ ++ + +HTSGHG +
Sbjct: 312 ANGTHKQIKIIPEDTVVFSSSPIPGNTKSINRTINALYKAGADVIHSKISNIHTSGHGSQ 371
Query: 181 GELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGI 217
G+ + +L+L++P++FLPIHGE LK H G G+
Sbjct: 372 GDQQLMLRLIQPKYFLPIHGEYRMLKAHGETGVQCGV 408
>sp|Q4L5A3|RNJ1_STAHJ Ribonuclease J 1 OS=Staphylococcus haemolyticus (strain JCSC1435)
GN=SH1863 PE=3 SV=1
Length = 559
Score = 145 bits (366), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/218 (35%), Positives = 122/218 (55%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
++SDSTN L P T SE V + + KGR+I FASNI+R+ AA RK
Sbjct: 192 LLSDSTNALVPDFTLSEREVGQNVDKIFRNCKGRIIFATFASNIYRVQQAVEAAIKYNRK 251
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+V G S+ + + G P T V+ I+ +LLI+ TGSQ EP AAL+
Sbjct: 252 IVTFGRSMENNIKIGMELGYIKAPPETFVEPNKINNIPKHELLILCTGSQGEPMAALSRI 311
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR 180
+ G +K+ +D +++S+ IPGN + + +N + + G+ ++ + +HTSGHG +
Sbjct: 312 ANGTHKQIKIIPDDTVVFSSSPIPGNTKSINRTINALYKAGADVIHSKISNIHTSGHGSQ 371
Query: 181 GELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGIR 218
G+ + +L+L++P++FLPIHGE LK H G G++
Sbjct: 372 GDQQLMLRLIQPKYFLPIHGEYRMLKAHGQTGVDCGVK 409
>sp|O33294|Y2752_MYCTU Putative ribonuclease J Rv2752c OS=Mycobacterium tuberculosis
GN=Rv2752c PE=1 SV=1
Length = 558
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 124/217 (57%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
++ DSTN PG SES V L R + A GRVI FASN+ R+ + AA GR+
Sbjct: 199 LLCDSTNAEIPGVGPSESEVGPTLHRLIRGADGRVIVACFASNVDRVQQIIDAAVALGRR 258
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+ FVG S+ + A + G + S L+ + + AP ++++TTG+Q EP +AL+
Sbjct: 259 VSFVGRSMVRNMRVARQLGFLRVADSDLIDIAAAETMAPDQVVLITTGTQGEPMSALSRM 318
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR 180
S G S+ LT D+I+ S+ +IPGNE V +++ +S+IG+ +V +H SGH Y
Sbjct: 319 SRGEHRSITLTAGDLIVLSSSLIPGNEEAVFGVIDALSKIGARVVTNAQARVHVSGHAYA 378
Query: 181 GELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGI 217
GEL + V+P++ +P+HG L+ + L STG+
Sbjct: 379 GELLFLYNGVRPRNVMPVHGTWRMLRANAKLAASTGV 415
>sp|Q49WL3|RNJ1_STAS1 Ribonuclease J 1 OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP1701
PE=3 SV=1
Length = 620
Score = 142 bits (358), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 118/217 (54%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
++SDSTN L P T SE V + + GR+I FASNI+R+ AA RK
Sbjct: 192 LLSDSTNSLVPDFTLSEREVGQNVEKIFRNCSGRIIFATFASNIYRVQQAVEAAIKHNRK 251
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+V G S+ + + G P T V+ I+ +LLI+ TGSQ EP AAL+
Sbjct: 252 IVTFGRSMENNIKIGMELGYIKAPPETFVEPNKINTVPKHELLILCTGSQGEPMAALSRI 311
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR 180
+ G +K+ ED +++S+ IPGN + + +N + G+ ++ + +HTSGHG +
Sbjct: 312 ANGTHKQIKIIPEDTVVFSSSPIPGNTKSINRTINSLYRAGAEVIHNKVSNIHTSGHGSK 371
Query: 181 GELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGI 217
G+ + +L+L++P+ FLPIHGE LK H G G+
Sbjct: 372 GDQQLMLRLLRPKFFLPIHGEYRMLKAHGQSGIECGV 408
>sp|P47385|RNJ_MYCGE Ribonuclease J OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 /
NCTC 10195) GN=MG139 PE=3 SV=1
Length = 569
Score = 140 bits (353), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 125/219 (57%), Gaps = 1/219 (0%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
MS+STN PG + SE ++ + + + A+GRVI T FASNI R+ + A RK
Sbjct: 200 FMSESTNAEVPGFSQSEKLIYRNIQKILKEARGRVILTTFASNITRINEIIEIALNNKRK 259
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+ +G S+ ++ + K G ID + +V+V DI Y +++LI+ TGSQ E AALN
Sbjct: 260 ICLLGKSMDVNVNISRKIGLMAIDSNDIVEVRDIKNYPDRNILILCTGSQGEEAAALNTM 319
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNE-GLHTSGHGY 179
+ G + + L + D I+ S+ IPGN + V +LN +S+ G I ++ LH SGH
Sbjct: 320 ARGKHNWVSLKSTDTIIMSSNPIPGNYAAVENLLNELSKFGVAIYENSSQLKLHASGHAT 379
Query: 180 RGELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGIR 218
+ EL+ +L L+ P++ +PIHGE ++ + + GI+
Sbjct: 380 QQELQLMLNLMFPKYLIPIHGEFKMMRTIKNIANECGIK 418
>sp|P75497|RNJ_MYCPN Ribonuclease J OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129)
GN=MPN_280 PE=3 SV=1
Length = 569
Score = 139 bits (351), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 123/218 (56%), Gaps = 1/218 (0%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
M ++TN PG + SE ++ + + + A+GRVI T FASNI R+ + A RK
Sbjct: 200 FMCETTNAEIPGFSQSEKLIYRNINKIIKEARGRVILTTFASNITRINEIIEIAVNNKRK 259
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+ +G S+ ++ + K G ID + +V+V DI Y + +LI+ TGSQ E AALN
Sbjct: 260 VCLLGKSMDVNVNISRKIGLMDIDSNDIVEVRDIKNYPDRSILILCTGSQGEDSAALNTM 319
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGR-NEGLHTSGHGY 179
+ G + + L + D I+ S+ IPGN + V +LN +S+ G TI N LH SGH
Sbjct: 320 ARGKHNWVSLKSTDTIIMSSNPIPGNYAAVENLLNELSKYGVTIFENSPNMKLHASGHAT 379
Query: 180 RGELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGI 217
+ EL+ +L LV P++ +PIHGE ++ + + + GI
Sbjct: 380 QQELQLMLNLVFPRYLIPIHGEYKMMRTIKNIAQECGI 417
>sp|P54123|RNJ_SYNY3 Ribonuclease J OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=slr0551 PE=3 SV=1
Length = 640
Score = 135 bits (341), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 123/217 (56%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
++SDSTN PG T SE+ V L R S A+GR++ T FAS++HR+ + + A RK
Sbjct: 196 LLSDSTNAEVPGITPSEASVIPNLDRVFSQAEGRLMVTTFASSVHRVNIILSLAQKHQRK 255
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+ VG S+ + A K G + V ++ + LI+TTGSQ EP AA+
Sbjct: 256 VAVVGRSMLNVIAHARKLGYIKCPDNLFVPLKAARNLPDQQQLILTTGSQGEPLAAMTRI 315
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR 180
S G +K+ D +++SA IPGN V+ ++R+ G+ ++ G+++G+H SGH +
Sbjct: 316 SNGEHPQIKIRQGDTVVFSANPIPGNTIAVVNTIDRLMMQGANVIYGKHQGIHVSGHASQ 375
Query: 181 GELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGI 217
E + +L L +P+ F+P+HGE L +H + ++ GI
Sbjct: 376 EEHKMLLALTRPKFFVPVHGEHRMLVKHSQMAQAQGI 412
>sp|Q45493|RNJ1_BACSU Ribonuclease J 1 OS=Bacillus subtilis (strain 168) GN=rnjA PE=1
SV=1
Length = 555
Score = 133 bits (334), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 117/217 (53%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
++SDSTN +P T SE V +++ GR+I FASNIHRL V AA GRK
Sbjct: 192 LLSDSTNSENPEFTMSERRVGESIHDIFRKVDGRIIFATFASNIHRLQQVIEAAVQNGRK 251
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+ G S+ + ++ G +T ++ +I+ + I+ TGSQ EP AAL+
Sbjct: 252 VAVFGRSMESAIEIGQTLGYINCPKNTFIEHNEINRMPANKVTILCTGSQGEPMAALSRI 311
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR 180
+ G + + D +++S+ IPGN V + +N++ G+ ++ G +HTSGHG +
Sbjct: 312 ANGTHRQISINPGDTVVFSSSPIPGNTISVSRTINQLYRAGAEVIHGPLNDIHTSGHGGQ 371
Query: 181 GELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGI 217
E + +L+L+KP+ F+PIHGE K H L GI
Sbjct: 372 EEQKLMLRLIKPKFFMPIHGEYRMQKMHVKLATDCGI 408
>sp|O31760|RNJ2_BACSU Ribonuclease J 2 OS=Bacillus subtilis (strain 168) GN=rnjB PE=1
SV=3
Length = 555
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 119/220 (54%), Gaps = 1/220 (0%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
++SDS N PG T SE+ V + + ++ RVI FASNI+R+ V AA GRK
Sbjct: 193 LLSDSANAERPGYTPSEAAVSGEISDALYNSQNRVIIAVFASNINRIQQVIHAAAQNGRK 252
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+ G +L++ L A K G D + V+D+ Y +++ I+T GSQ EP AAL
Sbjct: 253 IAVAGKNLQSVLQLARKLGYIEADDELFISVQDVKKYPKREVAIITAGSQGEPLAALTRM 312
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR 180
+ L + D ++ ++ IPG E K ++ ++ G+ ++ + +H SGHG +
Sbjct: 313 ANKAHKQLNIEEGDTVVIASTPIPGQELIYSKTVDLLARAGAQVIFAQKR-VHVSGHGSQ 371
Query: 181 GELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGIRHS 220
EL+ ++ L+KP++ +P++GE K H + TG++ S
Sbjct: 372 EELKLMINLLKPKYLIPVNGEYRMQKAHSKIAEETGMKRS 411
>sp|P56185|RNJ_HELPY Ribonuclease J OS=Helicobacter pylori (strain ATCC 700392 / 26695)
GN=HP_1430 PE=3 SV=1
Length = 689
Score = 128 bits (321), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 116/217 (53%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
++SDSTN G T SES + A A+GRVI + F+SNIHR+ RK
Sbjct: 326 LLSDSTNSHKSGTTPSESTIAPAFDTLFKEAQGRVIMSTFSSNIHRVYQAIQYGIKYNRK 385
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+ +G S+ LD A + G + + ++ ++ Y ++LIVTTGSQ E +AL
Sbjct: 386 IAVIGRSMEKNLDIARELGYIHLPYQSFIEANEVAKYPDNEILIVTTGSQGETMSALYRM 445
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR 180
+ + + D+++ SAK IPGNE+ V +LN + + + + + +H SGH +
Sbjct: 446 ATDEHRHISIKPNDLVIISAKAIPGNEASVSAVLNFLIKKEAKVAYQEFDNIHVSGHAAQ 505
Query: 181 GELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGI 217
E + +L+L+KP+ FLP+HGE + H+ S G+
Sbjct: 506 EEQKLMLRLIKPKFFLPVHGEYNHVARHKQTAISCGV 542
>sp|Q9ZJI6|RNJ_HELPJ Ribonuclease J OS=Helicobacter pylori (strain J99) GN=jhp_1323 PE=3
SV=1
Length = 692
Score = 126 bits (317), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 116/217 (53%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
++SDSTN G T SES + A A+GRVI + F+SNIHR+ RK
Sbjct: 329 LLSDSTNSHKSGTTPSESTIAPAFDTLFKEAQGRVIMSTFSSNIHRVHQAIQYGIKYNRK 388
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+ +G S+ LD A + G + + ++ ++ Y ++LIVTTGSQ E +AL
Sbjct: 389 IAVIGRSMEKNLDIARELGYIHLPYQSFIEANEVAKYPDNEVLIVTTGSQGETMSALYRM 448
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR 180
+ + + D+++ SAK IPGNE+ V +LN + + + + + +H SGH +
Sbjct: 449 ATDEHRHISIKPNDLVIISAKAIPGNEASVSAVLNFLIKKEAKVAYQEFDNIHVSGHAAQ 508
Query: 181 GELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGI 217
E + +L+L+KP+ FLP+HGE + H+ + G+
Sbjct: 509 EEQKLMLRLIKPKFFLPVHGEYNHVARHKQTAIACGV 545
>sp|Q8CST0|RNJ2_STAES Ribonuclease J 2 OS=Staphylococcus epidermidis (strain ATCC 12228)
GN=SE_0952 PE=3 SV=2
Length = 557
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 108/217 (49%), Gaps = 1/217 (0%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
++SDST PG T E++++ + + KGR+I + +ASN R+ V A RK
Sbjct: 195 LISDSTEAEKPGYNTPENIIEHHMYDAFAKVKGRLIVSCYASNFVRIQQVLNIASQLNRK 254
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+ F+G SL + + A K G I L+ + +++ Y +++I+ TG Q EP AL+
Sbjct: 255 VSFLGRSLESSFNIARKMGYFDIPKDLLIPINEVENYPKNEVIIIATGMQGEPVEALSQM 314
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR 180
+ + + D I + E + LN + G+ I+ N+ +H S HG
Sbjct: 315 ARKKHKIMNIEEGDSIFLAITASANMEVIIADTLNELVRAGAHII-PNNKKIHASSHGCM 373
Query: 181 GELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGI 217
EL+ +L ++KP++F+P+ GE H L TG+
Sbjct: 374 EELKMMLNIMKPEYFVPVQGEFKMQIAHAKLAAETGV 410
>sp|Q5HPR6|RNJ2_STAEQ Ribonuclease J 2 OS=Staphylococcus epidermidis (strain ATCC 35984 /
RP62A) GN=SERP0842 PE=3 SV=2
Length = 557
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 108/217 (49%), Gaps = 1/217 (0%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
++SDST PG T E++++ + + KGR+I + +ASN R+ V A RK
Sbjct: 195 LISDSTEAEKPGYNTPENIIEHHMYDAFAKVKGRLIVSCYASNFVRIQQVLNIASQLNRK 254
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+ F+G SL + + A K G I L+ + +++ Y +++I+ TG Q EP AL+
Sbjct: 255 VSFLGRSLESSFNIARKMGYFDIPKDLLIPINEVENYPKNEVIIIATGMQGEPVEALSQM 314
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR 180
+ + + D I + E + LN + G+ I+ N+ +H S HG
Sbjct: 315 ARKKHKIMNIEEGDSIFLAITASANMEVIIADTLNELVRAGAHII-PNNKKIHASSHGCM 373
Query: 181 GELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGI 217
EL+ +L ++KP++F+P+ GE H L TG+
Sbjct: 374 EELKMMLNIMKPEYFVPVQGEFKMQIAHAKLAAETGV 410
>sp|Q7A115|RNJ2_STAAW Ribonuclease J 2 OS=Staphylococcus aureus (strain MW2) GN=MW1158
PE=3 SV=1
Length = 557
Score = 107 bits (266), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 107/217 (49%), Gaps = 1/217 (0%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
++SDST PG T E+V++ + + +GR+I + +ASN R+ V A RK
Sbjct: 195 LISDSTEAEKPGYNTPENVIEHHMYDAFAKVRGRLIVSCYASNFIRIQQVLNIASKLNRK 254
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+ F+G SL + + A K G I L+ + ++D Y +++I+ TG Q EP AL+
Sbjct: 255 VSFLGRSLESSFNIARKMGYFDIPKDLLIPITEVDNYPKNEVIIIATGMQGEPVEALSQM 314
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR 180
+ + + D + + E + LN + G+ I+ N+ +H S HG
Sbjct: 315 AQHKHKIMNIEEGDSVFLAITASANMEVIIANTLNELVRAGAHII-PNNKKIHASSHGCM 373
Query: 181 GELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGI 217
EL+ ++ ++KP++F+P+ GE H L G+
Sbjct: 374 EELKMMINIMKPEYFIPVQGEFKMQIAHAKLAAEAGV 410
>sp|Q6G9T8|RNJ2_STAAS Ribonuclease J 2 OS=Staphylococcus aureus (strain MSSA476)
GN=SAS1209 PE=3 SV=1
Length = 557
Score = 107 bits (266), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 107/217 (49%), Gaps = 1/217 (0%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
++SDST PG T E+V++ + + +GR+I + +ASN R+ V A RK
Sbjct: 195 LISDSTEAEKPGYNTPENVIEHHMYDAFAKVRGRLIVSCYASNFIRIQQVLNIASKLNRK 254
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+ F+G SL + + A K G I L+ + ++D Y +++I+ TG Q EP AL+
Sbjct: 255 VSFLGRSLESSFNIARKMGYFDIPKDLLIPITEVDNYPKNEVIIIATGMQGEPVEALSQM 314
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR 180
+ + + D + + E + LN + G+ I+ N+ +H S HG
Sbjct: 315 AQHKHKIMNIEEGDSVFLAITASANMEVIIANTLNELVRAGAHII-PNNKKIHASSHGCM 373
Query: 181 GELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGI 217
EL+ ++ ++KP++F+P+ GE H L G+
Sbjct: 374 EELKMMINIMKPEYFIPVQGEFKMQIAHAKLAAEAGV 410
>sp|Q7A5X6|RNJ2_STAAN Ribonuclease J 2 OS=Staphylococcus aureus (strain N315) GN=SA1118
PE=1 SV=1
Length = 557
Score = 107 bits (266), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 107/217 (49%), Gaps = 1/217 (0%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
++SDST PG T E+V++ + + +GR+I + +ASN R+ V A RK
Sbjct: 195 LISDSTEAEKPGYNTPENVIEHHMYDAFAKVRGRLIVSCYASNFIRIQQVLNIASKLNRK 254
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+ F+G SL + + A K G I L+ + ++D Y +++I+ TG Q EP AL+
Sbjct: 255 VSFLGRSLESSFNIARKMGYFDIPKDLLIPITEVDNYPKNEVIIIATGMQGEPVEALSQM 314
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR 180
+ + + D + + E + LN + G+ I+ N+ +H S HG
Sbjct: 315 AQHKHKIMNIEEGDSVFLAITASANMEVIIANTLNELVRAGAHII-PNNKKIHASSHGCM 373
Query: 181 GELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGI 217
EL+ ++ ++KP++F+P+ GE H L G+
Sbjct: 374 EELKMMINIMKPEYFIPVQGEFKMQIAHAKLAAEAGV 410
>sp|Q99UJ7|RNJ2_STAAM Ribonuclease J 2 OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=SAV1275 PE=1 SV=1
Length = 557
Score = 107 bits (266), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 107/217 (49%), Gaps = 1/217 (0%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
++SDST PG T E+V++ + + +GR+I + +ASN R+ V A RK
Sbjct: 195 LISDSTEAEKPGYNTPENVIEHHMYDAFAKVRGRLIVSCYASNFIRIQQVLNIASKLNRK 254
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+ F+G SL + + A K G I L+ + ++D Y +++I+ TG Q EP AL+
Sbjct: 255 VSFLGRSLESSFNIARKMGYFDIPKDLLIPITEVDNYPKNEVIIIATGMQGEPVEALSQM 314
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR 180
+ + + D + + E + LN + G+ I+ N+ +H S HG
Sbjct: 315 AQHKHKIMNIEEGDSVFLAITASANMEVIIANTLNELVRAGAHII-PNNKKIHASSHGCM 373
Query: 181 GELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGI 217
EL+ ++ ++KP++F+P+ GE H L G+
Sbjct: 374 EELKMMINIMKPEYFIPVQGEFKMQIAHAKLAAEAGV 410
>sp|Q5HGF6|RNJ2_STAAC Ribonuclease J 2 OS=Staphylococcus aureus (strain COL) GN=SACOL1294
PE=3 SV=2
Length = 557
Score = 107 bits (266), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 107/217 (49%), Gaps = 1/217 (0%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
++SDST PG T E+V++ + + +GR+I + +ASN R+ V A RK
Sbjct: 195 LISDSTEAEKPGYNTPENVIEHHMYDAFAKVRGRLIVSCYASNFIRIQQVLNIASKLNRK 254
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+ F+G SL + + A K G I L+ + ++D Y +++I+ TG Q EP AL+
Sbjct: 255 VSFLGRSLESSFNIARKMGYFDIPKDLLIPITEVDNYPKNEVIIIATGMQGEPVEALSQM 314
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR 180
+ + + D + + E + LN + G+ I+ N+ +H S HG
Sbjct: 315 AQHKHKIMNIEEGDSVFLAITASANMEVIIANTLNELVRAGAHII-PNNKKIHASSHGCM 373
Query: 181 GELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGI 217
EL+ ++ ++KP++F+P+ GE H L G+
Sbjct: 374 EELKMMINIMKPEYFIPVQGEFKMQIAHAKLAAEAGV 410
>sp|Q2YXP1|RNJ2_STAAB Ribonuclease J 2 OS=Staphylococcus aureus (strain bovine RF122 /
ET3-1) GN=SAB1137 PE=3 SV=2
Length = 557
Score = 107 bits (266), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 107/217 (49%), Gaps = 1/217 (0%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
++SDST PG T E+V++ + + +GR+I + +ASN R+ V A RK
Sbjct: 195 LISDSTEAEKPGYNTPENVIEHHMYDAFAKVRGRLIVSCYASNFIRIQQVLNIASKLNRK 254
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+ F+G SL + + A K G I L+ + ++D Y +++I+ TG Q EP AL+
Sbjct: 255 VSFLGRSLESSFNIARKMGYFDIPKDLLIPITEVDNYPKNEVIIIATGMQGEPVEALSQM 314
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR 180
+ + + D + + E + LN + G+ I+ N+ +H S HG
Sbjct: 315 AQHKHKIMNIEEGDSVFLAITASANMEVIIANTLNELVRAGAHII-PNNKKIHASSHGCM 373
Query: 181 GELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGI 217
EL+ ++ ++KP++F+P+ GE H L G+
Sbjct: 374 EELKMMINIMKPEYFIPVQGEFKMQIAHAKLAAEAGV 410
>sp|Q2FZ19|RNJ2_STAA8 Ribonuclease J 2 OS=Staphylococcus aureus (strain NCTC 8325)
GN=SAOUHSC_01252 PE=3 SV=2
Length = 557
Score = 107 bits (266), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 107/217 (49%), Gaps = 1/217 (0%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
++SDST PG T E+V++ + + +GR+I + +ASN R+ V A RK
Sbjct: 195 LISDSTEAEKPGYNTPENVIEHHMYDAFAKVRGRLIVSCYASNFIRIQQVLNIASKLNRK 254
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+ F+G SL + + A K G I L+ + ++D Y +++I+ TG Q EP AL+
Sbjct: 255 VSFLGRSLESSFNIARKMGYFDIPKDLLIPITEVDNYPKNEVIIIATGMQGEPVEALSQM 314
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR 180
+ + + D + + E + LN + G+ I+ N+ +H S HG
Sbjct: 315 AQHKHKIMNIEEGDSVFLAITASANMEVIIANTLNELVRAGAHII-PNNKKIHASSHGCM 373
Query: 181 GELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGI 217
EL+ ++ ++KP++F+P+ GE H L G+
Sbjct: 374 EELKMMINIMKPEYFIPVQGEFKMQIAHAKLAAEAGV 410
>sp|Q2FHG3|RNJ2_STAA3 Ribonuclease J 2 OS=Staphylococcus aureus (strain USA300)
GN=SAUSA300_1168 PE=3 SV=2
Length = 557
Score = 107 bits (266), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 107/217 (49%), Gaps = 1/217 (0%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
++SDST PG T E+V++ + + +GR+I + +ASN R+ V A RK
Sbjct: 195 LISDSTEAEKPGYNTPENVIEHHMYDAFAKVRGRLIVSCYASNFIRIQQVLNIASKLNRK 254
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+ F+G SL + + A K G I L+ + ++D Y +++I+ TG Q EP AL+
Sbjct: 255 VSFLGRSLESSFNIARKMGYFDIPKDLLIPITEVDNYPKNEVIIIATGMQGEPVEALSQM 314
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR 180
+ + + D + + E + LN + G+ I+ N+ +H S HG
Sbjct: 315 AQHKHKIMNIEEGDSVFLAITASANMEVIIANTLNELVRAGAHII-PNNKKIHASSHGCM 373
Query: 181 GELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGI 217
EL+ ++ ++KP++F+P+ GE H L G+
Sbjct: 374 EELKMMINIMKPEYFIPVQGEFKMQIAHAKLAAEAGV 410
>sp|Q6GHG0|RNJ2_STAAR Ribonuclease J 2 OS=Staphylococcus aureus (strain MRSA252)
GN=SAR1251 PE=1 SV=1
Length = 557
Score = 107 bits (266), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 107/217 (49%), Gaps = 1/217 (0%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
++SDST PG T E+V++ + + +GR+I + +ASN R+ V A RK
Sbjct: 195 LISDSTEAEKPGYNTPENVIEHHMYDAFAKVRGRLIVSCYASNFIRIQQVLNIASKLNRK 254
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+ F+G SL + + A K G I L+ + ++D Y +++I+ TG Q EP AL+
Sbjct: 255 VSFLGRSLESSFNIARKMGYFDIPKDLLIPITEVDNYPKNEVIIIATGMQGEPVEALSQM 314
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR 180
+ + + D + + E + LN + G+ I+ N+ +H S HG
Sbjct: 315 AQHKHKIMNIEEGDSVFLAITASANMEVIIANTLNELVRAGAHII-PNNKKIHASSHGCM 373
Query: 181 GELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGI 217
EL+ ++ ++KP++F+P+ GE H L G+
Sbjct: 374 EELKMMINIMKPEYFIPVQGEFKMQIAHAKLAAEAGV 410
>sp|Q49X63|RNJ2_STAS1 Ribonuclease J 2 OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP1490
PE=3 SV=1
Length = 557
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 109/218 (50%), Gaps = 1/218 (0%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
++SDST PG T E+V++ + + KGR+I + +ASN R+ V A RK
Sbjct: 195 LISDSTEAEKPGYNTPENVIESHMYDAFTKVKGRLIVSCYASNFIRIQQVLNLAQRLNRK 254
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+ F+G SL + + A K G I L+ + +++ Y +++I+ TG Q EP AL+
Sbjct: 255 VSFLGRSLESSFNIARKMGYFDISKDLLIPINEVENYPKNEVIIIATGMQGEPVEALSQM 314
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR 180
+ + + D + + E V LN + G+ I+ ++ +H S HG
Sbjct: 315 AQKKHKIMNIEPGDSVFLTITASANMEVIVGNTLNELVRAGAEII-PNSKKIHASSHGCM 373
Query: 181 GELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGIR 218
EL+ ++ ++KP++F+P++GE H L G++
Sbjct: 374 EELKMMINIMKPEYFIPVNGEFKMQISHAKLANEAGVQ 411
>sp|Q4L5X8|RNJ2_STAHJ Ribonuclease J 2 OS=Staphylococcus haemolyticus (strain JCSC1435)
GN=SH1638 PE=3 SV=1
Length = 557
Score = 104 bits (260), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 107/217 (49%), Gaps = 1/217 (0%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK 60
++SDST PG T E+V++ + + KGR+I + +ASN R+ V A RK
Sbjct: 195 LISDSTEAEKPGYNTPENVIESHIYDAFAKVKGRLIVSCYASNFIRIQQVLNTASKLNRK 254
Query: 61 LVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLA 120
+ F+G SL + + A K G I L+ + ++ Y +++I+ TG + EP AL+
Sbjct: 255 VSFLGRSLESSFNIARKMGYFDIPKDLLIPINEVGNYPKNEVVIIATGMEGEPIEALSQM 314
Query: 121 SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR 180
+ + + D + + E + LN + G+ I+ N+ +H S HG
Sbjct: 315 AQQKHRIMNIEEGDSVYLAITASANMEVIIADTLNELVRAGAYII-PNNKKIHASSHGCM 373
Query: 181 GELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGI 217
EL+ ++ ++KP++F+P+ GE H L +G+
Sbjct: 374 EELKMMINIMKPEYFIPVQGEFKMQIAHAKLANESGV 410
>sp|Q58271|RNJ_METJA Ribonuclease J OS=Methanocaldococcus jannaschii (strain ATCC 43067
/ DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0861
PE=3 SV=1
Length = 448
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 110/232 (47%), Gaps = 19/232 (8%)
Query: 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAA---KGRVITTQFASNIHRLGSVKAAADLT 57
+S++T + G+T E + L + AA K +I T F+S+I R+ S+ A+
Sbjct: 202 FISETTRINHEGKTPPEIIASGLLKNDLLAADNDKHGIIVTTFSSHIARIKSITDIAEKM 261
Query: 58 GRKLVFVGMSLRTYLDAAWKDG--KAPID------PSTL-VKVEDIDAYAPKDLLIVTTG 108
GR V +G S+ + A G K P D PS++ + +++I + LI+ TG
Sbjct: 262 GRTPVLLGRSMMRFCGIAQDIGLVKFPEDLRIYGDPSSIEMALKNIVKEGKEKYLIIATG 321
Query: 109 SQAEPRAALNLASYGGSHSLKLTNEDVILYSAKVIPG--NESRVMKMLNRISEIGSTIVM 166
Q E A L+ + + K D +++SA IP N ++ + +R+ +G I
Sbjct: 322 HQGEEGAVLSRMATNKT-PYKFEKYDCVVFSADPIPNPMNAAQRYMLESRLKLLGVRIF- 379
Query: 167 GRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGIR 218
+G H SGH + + ++L+ + P+H +P HG+ E+ L G R
Sbjct: 380 ---KGAHVSGHAAKEDHRDMLRWLNPEHIIPSHGDFNLTAEYTKLAEEEGYR 428
>sp|A8H2M6|ISCS_SHEPA Cysteine desulfurase OS=Shewanella pealeana (strain ATCC 700345 /
ANG-SQ1) GN=iscS PE=3 SV=1
Length = 404
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Query: 39 QFASNIHRLGSVKAAADLT-GRKLVFVGMSLRTYLDAAWKDGKAPIDPST----LVKVED 93
Q + I + + A +L RK++F ++DAA GK PID T L+ +
Sbjct: 152 QVNNEIGVIQDIDAIGELCRSRKIIF-------HVDAAQSAGKLPIDVQTTKVDLMSISG 204
Query: 94 IDAYAPKDLLIVTTGSQAEPRAALNLASYGGSH 126
Y PK + + + PR L A +GG H
Sbjct: 205 HKMYGPKGIGALYVSRK--PRIRLEAAMHGGGH 235
>sp|B0TNY1|ISCS_SHEHH Cysteine desulfurase OS=Shewanella halifaxensis (strain HAW-EB4)
GN=iscS PE=3 SV=1
Length = 404
Score = 31.2 bits (69), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Query: 39 QFASNIHRLGSVKAAADLT-GRKLVFVGMSLRTYLDAAWKDGKAPIDPST----LVKVED 93
Q + I + + A +L RK++F ++DAA GK PID T L+ +
Sbjct: 152 QVNNEIGVIQDIDAIGELCRSRKIIF-------HVDAAQSAGKLPIDVQTTKVDLMSISG 204
Query: 94 IDAYAPKDLLIVTTGSQAEPRAALNLASYGGSH 126
Y PK + + + PR L A +GG H
Sbjct: 205 HKMYGPKGIGALYVSRK--PRIRLEAAMHGGGH 235
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,030,635
Number of Sequences: 539616
Number of extensions: 3108402
Number of successful extensions: 8572
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 8519
Number of HSP's gapped (non-prelim): 48
length of query: 221
length of database: 191,569,459
effective HSP length: 113
effective length of query: 108
effective length of database: 130,592,851
effective search space: 14104027908
effective search space used: 14104027908
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)