Query 045468
Match_columns 221
No_of_seqs 113 out of 1058
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 13:33:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045468.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045468hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0595 mRNA degradation ribon 100.0 4.5E-50 9.8E-55 360.4 25.0 219 1-219 195-413 (555)
2 TIGR00649 MG423 conserved hypo 100.0 1.8E-45 4E-50 326.7 26.6 215 1-219 187-403 (422)
3 TIGR03675 arCOG00543 arCOG0054 99.8 4.4E-18 9.4E-23 157.2 18.9 203 1-218 368-617 (630)
4 COG1782 Predicted metal-depend 99.8 1.5E-18 3.3E-23 151.5 13.5 201 1-214 374-619 (637)
5 COG1236 YSH1 Predicted exonucl 99.5 1.2E-13 2.6E-18 122.9 14.1 204 1-216 184-410 (427)
6 PF07521 RMMBL: RNA-metabolisi 99.3 1.4E-12 3E-17 78.9 3.9 33 171-203 11-43 (43)
7 KOG1136 Predicted cleavage and 99.3 5.6E-11 1.2E-15 100.0 11.5 204 1-218 200-433 (501)
8 KOG1137 mRNA cleavage and poly 99.0 1.4E-09 3.1E-14 96.6 10.5 194 1-213 203-434 (668)
9 KOG1137 mRNA cleavage and poly 97.6 5E-06 1.1E-10 74.5 -3.4 196 3-203 348-566 (668)
10 KOG1361 Predicted hydrolase in 96.1 0.026 5.7E-07 50.8 8.0 37 171-207 381-417 (481)
11 PF07522 DRMBL: DNA repair met 94.0 0.093 2E-06 37.9 4.1 28 171-198 78-105 (110)
12 PF13483 Lactamase_B_3: Beta-l 91.6 0.38 8.3E-06 36.9 4.9 29 171-199 133-163 (163)
13 PF10996 Beta-Casp: Beta-Casp 91.5 0.37 8.1E-06 35.2 4.5 48 93-148 74-123 (126)
14 TIGR03588 PseC UDP-4-keto-6-de 91.0 1.7 3.6E-05 38.1 8.9 79 130-217 66-149 (380)
15 PRK00685 metal-dependent hydro 90.1 0.97 2.1E-05 36.5 6.2 27 175-201 168-194 (228)
16 PRK11706 TDP-4-oxo-6-deoxy-D-g 89.4 3.1 6.6E-05 36.5 9.2 78 130-217 68-147 (375)
17 PF12706 Lactamase_B_2: Beta-l 88.3 0.45 9.7E-06 37.1 2.9 58 132-199 128-193 (194)
18 PRK11709 putative L-ascorbate 88.0 1.5 3.2E-05 38.5 6.2 65 132-201 218-284 (355)
19 TIGR02379 ECA_wecE TDP-4-keto- 87.2 4.6 0.0001 35.5 8.9 78 130-217 68-147 (376)
20 PRK00055 ribonuclease Z; Revie 84.7 3.7 8E-05 33.8 6.7 29 174-202 207-235 (270)
21 PF01041 DegT_DnrJ_EryC1: DegT 84.3 5.4 0.00012 34.7 7.8 78 129-217 61-141 (363)
22 PRK11658 UDP-4-amino-4-deoxy-L 83.8 6.9 0.00015 34.4 8.3 78 130-217 70-149 (379)
23 COG1167 ARO8 Transcriptional r 83.2 11 0.00023 34.3 9.4 96 102-217 157-261 (459)
24 COG0399 WecE Predicted pyridox 82.3 12 0.00027 33.0 9.2 79 130-218 71-151 (374)
25 PRK06702 O-acetylhomoserine am 82.0 13 0.00029 33.5 9.5 76 131-217 98-178 (432)
26 cd06451 AGAT_like Alanine-glyo 80.6 28 0.00062 29.7 10.9 79 131-217 72-155 (356)
27 cd00616 AHBA_syn 3-amino-5-hyd 80.2 16 0.00034 31.2 9.1 77 131-217 56-134 (352)
28 PRK15407 lipopolysaccharide bi 78.9 25 0.00055 31.7 10.3 78 130-217 108-187 (438)
29 PRK04311 selenocysteine syntha 77.5 6.7 0.00014 35.7 6.2 80 131-217 163-251 (464)
30 PRK05613 O-acetylhomoserine am 77.0 11 0.00024 33.9 7.5 74 131-217 106-186 (437)
31 PRK11244 phnP carbon-phosphoru 76.8 14 0.0003 30.3 7.5 66 132-201 153-222 (250)
32 PRK05957 aspartate aminotransf 76.3 29 0.00063 30.4 9.8 76 131-217 111-194 (389)
33 TIGR03307 PhnP phosphonate met 76.0 8.3 0.00018 31.4 5.9 68 132-203 143-214 (238)
34 PLN00175 aminotransferase fami 75.9 26 0.00056 31.1 9.4 77 131-217 137-221 (413)
35 COG1105 FruK Fructose-1-phosph 75.1 8.3 0.00018 33.2 5.7 79 130-219 127-217 (310)
36 PRK08175 aminotransferase; Val 74.6 37 0.0008 29.8 10.0 95 103-217 94-198 (395)
37 PRK07550 hypothetical protein; 74.5 42 0.00091 29.2 10.3 78 131-217 112-197 (386)
38 PF11495 Regulator_TrmB: Archa 74.5 17 0.00036 29.7 7.3 51 16-66 7-57 (233)
39 PLN00145 tyrosine/nicotianamin 74.1 29 0.00062 31.1 9.3 97 103-217 120-224 (430)
40 PTZ00377 alanine aminotransfer 73.5 34 0.00073 31.1 9.7 99 103-217 141-252 (481)
41 cd01474 vWA_ATR ATR (Anthrax T 73.1 29 0.00064 26.9 8.2 52 154-213 127-178 (185)
42 PRK08134 O-acetylhomoserine am 72.7 36 0.00079 30.6 9.6 75 131-217 101-180 (433)
43 cd00615 Orn_deC_like Ornithine 72.3 49 0.0011 27.7 9.9 80 131-217 97-184 (294)
44 PRK08912 hypothetical protein; 72.1 41 0.00088 29.3 9.7 97 102-217 89-193 (387)
45 PLN02231 alanine transaminase 72.1 41 0.00088 31.2 9.9 97 103-217 194-305 (534)
46 PRK09257 aromatic amino acid a 71.7 69 0.0015 28.0 11.1 99 103-217 97-206 (396)
47 PRK08636 aspartate aminotransf 71.4 27 0.00058 30.8 8.4 99 102-217 97-209 (403)
48 TIGR00474 selA seryl-tRNA(sec) 71.1 12 0.00025 34.1 6.1 78 131-217 158-246 (454)
49 PRK05939 hypothetical protein; 71.0 49 0.0011 29.4 9.9 74 131-217 84-162 (397)
50 KOG2862 Alanine-glyoxylate ami 70.9 21 0.00045 31.0 7.0 66 130-203 89-154 (385)
51 PF04748 Polysacc_deac_2: Dive 70.9 55 0.0012 26.5 10.0 127 14-165 70-206 (213)
52 PRK05942 aspartate aminotransf 70.4 47 0.001 29.1 9.7 100 100-217 97-204 (394)
53 PLN02368 alanine transaminase 70.3 53 0.0012 29.2 10.0 95 103-217 133-244 (407)
54 TIGR01977 am_tr_V_EF2568 cyste 69.7 52 0.0011 28.3 9.7 80 131-217 84-168 (376)
55 PRK06234 methionine gamma-lyas 69.6 43 0.00093 29.7 9.3 73 131-215 101-178 (400)
56 PRK09082 methionine aminotrans 69.5 38 0.00083 29.6 8.9 77 131-217 113-197 (386)
57 KOG1135 mRNA cleavage and poly 69.4 1.1E+02 0.0024 29.4 12.2 53 1-56 194-248 (764)
58 COG1105 FruK Fructose-1-phosph 69.4 34 0.00073 29.5 8.1 63 5-67 101-168 (310)
59 PRK10874 cysteine sulfinate de 69.1 58 0.0013 28.5 10.0 81 130-217 106-191 (401)
60 PRK08133 O-succinylhomoserine 69.0 44 0.00096 29.5 9.2 75 131-217 98-177 (390)
61 PRK07309 aromatic amino acid a 68.1 72 0.0016 27.9 10.4 77 131-217 113-200 (391)
62 cd06453 SufS_like Cysteine des 68.1 64 0.0014 27.7 10.0 79 132-217 87-170 (373)
63 PRK07810 O-succinylhomoserine 67.9 51 0.0011 29.3 9.4 75 131-217 107-186 (403)
64 TIGR03531 selenium_SpcS O-phos 67.5 32 0.0007 31.2 8.0 80 132-218 150-237 (444)
65 PRK06207 aspartate aminotransf 67.2 59 0.0013 28.7 9.7 79 131-217 124-212 (405)
66 PRK08248 O-acetylhomoserine am 67.0 46 0.001 29.9 9.0 75 131-217 101-180 (431)
67 PRK14012 cysteine desulfurase; 66.9 83 0.0018 27.6 10.6 79 131-217 92-175 (404)
68 PRK07681 aspartate aminotransf 66.8 56 0.0012 28.6 9.4 96 102-217 95-200 (399)
69 PRK09148 aminotransferase; Val 66.8 46 0.001 29.4 8.9 96 102-217 94-199 (405)
70 PRK09331 Sep-tRNA:Cys-tRNA syn 66.4 62 0.0014 28.3 9.6 79 131-217 100-189 (387)
71 cd06185 PDR_like Phthalate dio 65.8 64 0.0014 25.3 10.6 46 174-219 157-202 (211)
72 PLN02409 serine--glyoxylate am 65.3 70 0.0015 28.2 9.7 79 131-217 82-170 (401)
73 PRK12414 putative aminotransfe 65.3 59 0.0013 28.4 9.2 77 131-217 112-196 (384)
74 PLN02656 tyrosine transaminase 64.2 64 0.0014 28.5 9.3 78 131-217 118-203 (409)
75 COG0436 Aspartate/tyrosine/aro 63.4 76 0.0017 28.1 9.6 100 100-217 89-197 (393)
76 PRK07503 methionine gamma-lyas 63.2 54 0.0012 29.1 8.7 75 131-217 102-181 (403)
77 PRK07324 transaminase; Validat 62.8 46 0.001 29.0 8.1 78 131-217 102-187 (373)
78 PRK02948 cysteine desulfurase; 62.6 63 0.0014 28.0 8.9 78 132-217 87-169 (381)
79 cd06388 PBP1_iGluR_AMPA_GluR4 62.2 70 0.0015 28.0 9.1 76 135-219 128-205 (371)
80 PRK08247 cystathionine gamma-s 62.0 49 0.0011 28.8 8.1 75 131-217 88-167 (366)
81 PRK07366 succinyldiaminopimela 61.8 84 0.0018 27.3 9.6 95 102-216 94-198 (388)
82 PRK15481 transcriptional regul 60.9 80 0.0017 28.0 9.4 94 102-216 143-246 (431)
83 PF03102 NeuB: NeuB family; I 60.9 46 0.00099 27.6 7.2 130 44-191 55-194 (241)
84 PRK10834 vancomycin high tempe 60.3 84 0.0018 26.0 8.5 83 132-219 81-164 (239)
85 TIGR03301 PhnW-AepZ 2-aminoeth 60.0 1.1E+02 0.0023 25.9 11.7 78 132-217 73-156 (355)
86 TIGR01265 tyr_nico_aTase tyros 59.8 64 0.0014 28.4 8.5 77 132-217 119-203 (403)
87 PTZ00433 tyrosine aminotransfe 59.8 94 0.002 27.4 9.6 78 131-217 126-211 (412)
88 TIGR03540 DapC_direct LL-diami 59.6 96 0.0021 26.9 9.5 96 102-216 93-197 (383)
89 PRK04017 hypothetical protein; 59.5 72 0.0016 23.9 10.1 92 40-164 2-96 (132)
90 PRK02126 ribonuclease Z; Provi 59.5 35 0.00076 29.6 6.6 70 131-203 240-316 (334)
91 PRK07050 cystathionine beta-ly 59.2 95 0.0021 27.5 9.5 75 131-217 102-181 (394)
92 PRK06176 cystathionine gamma-s 59.1 40 0.00087 29.7 7.0 75 131-217 86-165 (380)
93 PRK06836 aspartate aminotransf 59.1 96 0.0021 27.2 9.5 74 131-214 118-199 (394)
94 PRK05967 cystathionine beta-ly 59.0 73 0.0016 28.4 8.7 75 131-217 101-180 (395)
95 TIGR03392 FeS_syn_CsdA cystein 58.6 1.2E+02 0.0027 26.3 10.5 81 130-217 103-188 (398)
96 TIGR01822 2am3keto_CoA 2-amino 58.6 1.2E+02 0.0026 26.2 10.0 72 131-217 120-201 (393)
97 TIGR01329 cysta_beta_ly_E cyst 58.6 49 0.0011 29.1 7.5 75 131-217 83-162 (378)
98 PRK08064 cystathionine beta-ly 58.5 46 0.001 29.4 7.3 73 131-217 90-169 (390)
99 PRK09276 LL-diaminopimelate am 58.4 1.1E+02 0.0023 26.6 9.6 97 102-217 95-200 (385)
100 PRK05569 flavodoxin; Provision 58.0 65 0.0014 23.6 7.1 54 131-189 82-135 (141)
101 PRK09265 aminotransferase AlaT 58.0 1.2E+02 0.0025 26.7 9.8 78 131-217 117-202 (404)
102 cd06452 SepCysS Sep-tRNA:Cys-t 57.9 1.1E+02 0.0025 26.2 9.6 79 131-217 81-170 (361)
103 PF10281 Ish1: Putative stress 57.3 23 0.00049 20.1 3.5 29 151-189 7-36 (38)
104 PRK07504 O-succinylhomoserine 57.0 41 0.00089 29.8 6.8 75 131-217 102-181 (398)
105 PRK08249 cystathionine gamma-s 57.0 1E+02 0.0022 27.3 9.3 75 131-217 101-180 (398)
106 PRK05994 O-acetylhomoserine am 56.9 1.1E+02 0.0023 27.5 9.4 75 131-217 100-179 (427)
107 PRK07671 cystathionine beta-ly 56.8 43 0.00093 29.4 6.8 73 131-217 86-165 (377)
108 TIGR03278 methan_mark_10 putat 56.5 69 0.0015 28.7 8.0 70 132-207 73-145 (404)
109 TIGR01326 OAH_OAS_sulfhy OAH/O 56.1 1.3E+02 0.0029 26.8 9.9 75 131-217 94-173 (418)
110 PF08659 KR: KR domain; Inter 55.8 30 0.00065 26.8 5.1 82 104-200 3-88 (181)
111 TIGR03537 DapC succinyldiamino 55.8 1.2E+02 0.0026 25.9 9.4 100 102-217 62-170 (350)
112 PRK07682 hypothetical protein; 55.1 1E+02 0.0022 26.6 8.9 78 131-217 103-188 (378)
113 COG2870 RfaE ADP-heptose synth 54.7 33 0.00072 30.7 5.6 52 15-67 128-180 (467)
114 cd07940 DRE_TIM_IPMS 2-isoprop 54.6 1E+02 0.0022 25.6 8.5 82 133-218 127-216 (268)
115 TIGR02651 RNase_Z ribonuclease 54.5 14 0.00031 31.0 3.3 64 133-201 200-268 (299)
116 COG1235 PhnP Metal-dependent h 54.3 11 0.00024 31.5 2.5 33 171-203 206-238 (269)
117 PRK08363 alanine aminotransfer 54.2 68 0.0015 28.1 7.7 78 131-217 115-200 (398)
118 PRK00011 glyA serine hydroxyme 54.1 31 0.00068 30.4 5.6 83 131-217 109-194 (416)
119 TIGR01325 O_suc_HS_sulf O-succ 54.1 98 0.0021 27.1 8.6 75 131-217 91-170 (380)
120 TIGR01264 tyr_amTase_E tyrosin 54.0 1.1E+02 0.0023 26.9 8.9 78 131-217 117-202 (401)
121 PRK07811 cystathionine gamma-s 53.8 41 0.00089 29.6 6.2 75 131-217 98-177 (388)
122 PLN02376 1-aminocyclopropane-1 53.8 1.5E+02 0.0032 27.3 9.9 94 103-217 122-233 (496)
123 KOG1135 mRNA cleavage and poly 53.7 23 0.0005 33.7 4.6 47 170-216 540-586 (764)
124 COG2861 Uncharacterized protei 53.4 92 0.002 25.9 7.6 54 14-68 102-160 (250)
125 PRK13355 bifunctional HTH-doma 53.4 1.1E+02 0.0023 28.1 9.1 78 131-217 230-315 (517)
126 PRK08361 aspartate aminotransf 53.4 1.3E+02 0.0028 26.2 9.3 75 131-216 115-199 (391)
127 PRK02113 putative hydrolase; P 53.2 16 0.00034 29.9 3.3 27 174-200 197-223 (252)
128 PRK08776 cystathionine gamma-s 53.0 1.1E+02 0.0023 27.3 8.8 75 131-217 97-176 (405)
129 PRK06290 aspartate aminotransf 52.9 1.5E+02 0.0033 26.2 9.7 96 102-217 108-213 (410)
130 PLN02187 rooty/superroot1 52.7 1.2E+02 0.0027 27.3 9.3 78 131-217 153-238 (462)
131 TIGR02080 O_succ_thio_ly O-suc 52.7 1E+02 0.0023 27.1 8.6 75 131-217 88-167 (382)
132 PRK08068 transaminase; Reviewe 52.4 1.2E+02 0.0026 26.4 8.9 95 102-216 96-200 (389)
133 cd06384 PBP1_NPR_B Ligand-bind 52.2 77 0.0017 27.7 7.7 61 152-219 167-229 (399)
134 PLN02509 cystathionine beta-ly 52.2 67 0.0014 29.3 7.4 73 131-217 169-248 (464)
135 PLN02855 Bifunctional selenocy 52.2 1.1E+02 0.0023 27.1 8.7 81 130-217 119-204 (424)
136 PF08484 Methyltransf_14: C-me 51.9 17 0.00037 28.0 3.1 31 38-68 44-78 (160)
137 TIGR01328 met_gam_lyase methio 51.8 1.3E+02 0.0028 26.6 9.0 75 131-217 96-175 (391)
138 COG0075 Serine-pyruvate aminot 51.4 1.8E+02 0.0039 25.9 10.5 76 131-216 78-161 (383)
139 PRK07683 aminotransferase A; V 51.3 1E+02 0.0022 26.9 8.3 74 131-217 111-195 (387)
140 PRK14807 histidinol-phosphate 51.2 1.1E+02 0.0023 26.3 8.4 56 131-196 98-153 (351)
141 PF00224 PK: Pyruvate kinase, 50.9 17 0.00036 31.8 3.2 33 152-190 18-50 (348)
142 PRK07337 aminotransferase; Val 50.8 1.3E+02 0.0029 26.0 9.0 78 131-217 112-197 (388)
143 PF13407 Peripla_BP_4: Peripla 50.7 71 0.0015 25.6 6.8 64 149-218 16-82 (257)
144 PLN02242 methionine gamma-lyas 50.5 1.3E+02 0.0027 27.0 8.8 76 131-217 113-194 (418)
145 COG1086 Predicted nucleoside-d 50.4 2.2E+02 0.0049 26.8 17.7 151 24-196 169-330 (588)
146 COG0362 Gnd 6-phosphogluconate 50.3 2E+02 0.0042 26.1 11.0 101 56-176 24-130 (473)
147 PRK06108 aspartate aminotransf 50.1 1.7E+02 0.0036 25.2 10.1 79 131-217 106-192 (382)
148 PRK08187 pyruvate kinase; Vali 50.0 25 0.00054 32.4 4.2 33 152-190 150-182 (493)
149 TIGR01979 sufS cysteine desulf 50.0 1.7E+02 0.0038 25.4 9.7 80 131-217 106-190 (403)
150 PRK13238 tnaA tryptophanase/L- 49.9 1.7E+02 0.0036 26.6 9.6 80 130-217 114-212 (460)
151 PLN02331 phosphoribosylglycina 49.8 1.3E+02 0.0029 24.2 8.0 84 102-198 2-85 (207)
152 PRK08960 hypothetical protein; 49.4 1.7E+02 0.0038 25.4 9.5 78 131-217 114-199 (387)
153 PF00155 Aminotran_1_2: Aminot 48.8 1.5E+02 0.0033 25.2 8.9 96 102-217 70-182 (363)
154 PRK10076 pyruvate formate lyas 48.8 1.4E+02 0.0031 24.0 11.8 180 11-218 15-208 (213)
155 COG2220 Predicted Zn-dependent 48.7 19 0.00042 29.7 3.1 38 162-199 174-211 (258)
156 TIGR01976 am_tr_V_VC1184 cyste 48.3 1.8E+02 0.004 25.2 9.6 78 131-217 102-187 (397)
157 PLN02607 1-aminocyclopropane-1 48.0 2.1E+02 0.0046 25.8 10.7 78 131-217 142-234 (447)
158 PF02421 FeoB_N: Ferrous iron 48.0 99 0.0021 23.7 6.7 36 30-65 77-112 (156)
159 PRK13520 L-tyrosine decarboxyl 48.0 1.1E+02 0.0024 26.1 8.0 75 132-217 103-182 (371)
160 PRK00945 acetyl-CoA decarbonyl 47.9 1.3E+02 0.0029 23.5 7.8 25 132-160 108-132 (171)
161 PF02310 B12-binding: B12 bind 47.9 96 0.0021 21.8 9.3 16 181-196 41-56 (121)
162 TIGR02090 LEU1_arch isopropylm 47.7 1.4E+02 0.003 26.2 8.5 82 133-218 125-211 (363)
163 TIGR03402 FeS_nifS cysteine de 47.7 1.6E+02 0.0035 25.4 9.0 78 132-217 85-167 (379)
164 PLN02765 pyruvate kinase 47.6 27 0.00058 32.4 4.1 34 152-191 44-77 (526)
165 PRK07777 aminotransferase; Val 47.3 1.6E+02 0.0034 25.6 8.9 79 131-217 107-193 (387)
166 TIGR01437 selA_rel uncharacter 46.8 1.3E+02 0.0028 26.2 8.2 76 133-217 99-180 (363)
167 PRK08574 cystathionine gamma-s 46.7 1.6E+02 0.0035 25.9 8.9 73 131-217 90-168 (385)
168 TIGR01324 cysta_beta_ly_B cyst 46.7 2E+02 0.0044 25.2 9.9 75 131-217 87-166 (377)
169 PRK11267 biopolymer transport 46.7 81 0.0018 23.5 6.0 54 11-64 77-133 (141)
170 PRK10076 pyruvate formate lyas 46.6 83 0.0018 25.4 6.4 15 203-217 145-159 (213)
171 cd07944 DRE_TIM_HOA_like 4-hyd 46.5 1.6E+02 0.0035 24.5 8.4 82 133-218 122-210 (266)
172 TIGR03217 4OH_2_O_val_ald 4-hy 46.4 2E+02 0.0043 25.0 9.4 68 147-218 142-215 (333)
173 PRK08114 cystathionine beta-ly 46.2 1.3E+02 0.0029 26.8 8.2 74 131-216 99-177 (395)
174 TIGR02764 spore_ybaN_pdaB poly 46.2 62 0.0014 25.2 5.6 66 152-218 111-183 (191)
175 cd07943 DRE_TIM_HOA 4-hydroxy- 45.9 1.6E+02 0.0034 24.4 8.3 68 147-218 140-212 (263)
176 cd06450 DOPA_deC_like DOPA dec 45.9 1.3E+02 0.0028 25.4 8.0 55 160-217 115-179 (345)
177 PRK08861 cystathionine gamma-s 45.7 1.9E+02 0.0041 25.6 9.1 75 131-217 90-169 (388)
178 cd00288 Pyruvate_Kinase Pyruva 45.6 31 0.00066 31.7 4.1 33 152-190 18-50 (480)
179 PF00682 HMGL-like: HMGL-like 45.5 1.6E+02 0.0035 23.7 8.1 82 133-218 121-208 (237)
180 TIGR02649 true_RNase_BN ribonu 45.1 24 0.00052 29.9 3.2 64 132-202 201-271 (303)
181 TIGR02803 ExbD_1 TonB system t 45.0 96 0.0021 22.4 6.1 52 12-63 64-118 (122)
182 KOG1546 Metacaspase involved i 44.6 46 0.001 28.9 4.7 45 130-180 100-151 (362)
183 PRK06247 pyruvate kinase; Prov 44.4 33 0.00071 31.4 4.1 34 152-191 21-54 (476)
184 TIGR02326 transamin_PhnW 2-ami 44.2 2E+02 0.0044 24.6 10.3 61 154-217 94-160 (363)
185 cd03767 SR_Res_par Serine reco 43.9 1.3E+02 0.0029 22.4 8.8 69 147-217 15-91 (146)
186 PRK07269 cystathionine gamma-s 43.8 1.5E+02 0.0033 25.9 8.1 73 131-217 90-167 (364)
187 cd00378 SHMT Serine-glycine hy 43.4 68 0.0015 28.0 6.0 84 131-217 103-190 (402)
188 PRK06225 aspartate aminotransf 43.3 1.7E+02 0.0037 25.3 8.4 78 132-217 106-191 (380)
189 PLN02762 pyruvate kinase compl 43.1 35 0.00075 31.6 4.1 34 152-191 41-74 (509)
190 PRK07178 pyruvate carboxylase 42.9 98 0.0021 28.1 7.0 38 180-217 62-99 (472)
191 PRK08195 4-hyroxy-2-oxovalerat 42.8 2.3E+02 0.0049 24.7 9.3 68 147-218 143-216 (337)
192 TIGR03235 DNA_S_dndA cysteine 42.4 2.1E+02 0.0046 24.3 8.8 76 134-217 89-169 (353)
193 PRK08045 cystathionine gamma-s 42.1 1.7E+02 0.0038 25.7 8.3 75 131-217 89-168 (386)
194 cd06367 PBP1_iGluR_NMDA N-term 41.9 2.2E+02 0.0048 24.3 9.8 78 136-219 141-221 (362)
195 TIGR03569 NeuB_NnaB N-acetylne 41.9 2.3E+02 0.0051 24.6 11.9 138 44-199 75-223 (329)
196 TIGR01064 pyruv_kin pyruvate k 41.9 38 0.00081 31.0 4.1 32 153-190 18-49 (473)
197 PRK06939 2-amino-3-ketobutyrat 41.8 2.3E+02 0.0049 24.4 10.5 72 131-217 124-205 (397)
198 cd05014 SIS_Kpsf KpsF-like pro 41.5 1E+02 0.0022 21.9 5.8 34 130-165 45-78 (128)
199 cd00614 CGS_like CGS_like: Cys 41.3 1.9E+02 0.004 25.2 8.4 75 131-217 77-156 (369)
200 cd06379 PBP1_iGluR_NMDA_NR1 N- 41.0 2.4E+02 0.0051 24.4 9.7 64 149-219 170-240 (377)
201 PRK09295 bifunctional cysteine 40.8 2.5E+02 0.0054 24.6 9.8 81 130-217 110-195 (406)
202 PF05913 DUF871: Bacterial pro 40.6 2.6E+02 0.0056 24.7 11.1 139 16-165 12-173 (357)
203 PRK14569 D-alanyl-alanine synt 40.2 2.1E+02 0.0046 24.1 8.3 60 150-218 24-84 (296)
204 COG2433 Uncharacterized conser 39.9 34 0.00074 32.1 3.5 65 150-218 39-105 (652)
205 PRK08463 acetyl-CoA carboxylas 39.8 1.2E+02 0.0026 27.7 7.1 39 179-217 61-99 (478)
206 PF07894 DUF1669: Protein of u 39.3 1.1E+02 0.0024 26.1 6.2 61 19-79 134-197 (284)
207 COG2028 Uncharacterized conser 39.2 16 0.00035 26.8 1.1 33 181-213 111-143 (145)
208 PRK09206 pyruvate kinase; Prov 39.2 44 0.00095 30.6 4.1 33 152-190 18-50 (470)
209 PRK06348 aspartate aminotransf 39.1 2.6E+02 0.0056 24.3 9.3 96 103-217 92-196 (384)
210 PLN00143 tyrosine/nicotianamin 39.1 2.7E+02 0.0059 24.5 9.3 78 131-217 119-204 (409)
211 PRK13479 2-aminoethylphosphona 38.9 2.5E+02 0.0054 24.0 11.3 78 132-217 79-162 (368)
212 PTZ00066 pyruvate kinase; Prov 38.7 45 0.00097 30.9 4.1 33 152-190 54-86 (513)
213 cd07941 DRE_TIM_LeuA3 Desulfob 38.4 1.1E+02 0.0023 25.7 6.1 66 149-218 152-222 (273)
214 PRK07812 O-acetylhomoserine am 38.4 3E+02 0.0065 24.8 9.3 74 131-217 106-186 (436)
215 PRK06739 pyruvate kinase; Vali 38.0 49 0.0011 29.1 4.1 34 152-191 17-50 (352)
216 PLN02450 1-aminocyclopropane-1 37.9 3.1E+02 0.0067 24.8 9.9 75 131-217 133-225 (468)
217 COG0027 PurT Formate-dependent 37.7 1.7E+02 0.0036 25.7 7.0 58 136-198 15-82 (394)
218 PRK04165 acetyl-CoA decarbonyl 37.6 2.8E+02 0.0061 25.3 8.9 64 14-78 101-174 (450)
219 PLN02461 Probable pyruvate kin 37.1 49 0.0011 30.6 4.1 33 152-190 37-69 (511)
220 PRK13938 phosphoheptose isomer 37.1 2.1E+02 0.0046 22.7 9.8 34 130-165 111-144 (196)
221 PRK06354 pyruvate kinase; Prov 36.7 49 0.0011 31.2 4.1 34 152-191 24-57 (590)
222 PRK11024 colicin uptake protei 36.6 1.6E+02 0.0035 21.9 6.3 49 15-63 85-136 (141)
223 COG2129 Predicted phosphoester 36.5 92 0.002 25.6 5.1 26 174-201 156-183 (226)
224 COG2873 MET17 O-acetylhomoseri 36.4 1.7E+02 0.0037 26.1 7.0 73 132-218 100-179 (426)
225 COG0695 GrxC Glutaredoxin and 36.2 67 0.0015 21.4 3.7 41 152-198 16-56 (80)
226 COG0370 FeoB Fe2+ transport sy 36.0 1.9E+02 0.004 27.8 7.7 47 30-80 80-126 (653)
227 cd02068 radical_SAM_B12_BD B12 35.7 1.6E+02 0.0034 21.1 6.0 37 30-66 38-76 (127)
228 cd06348 PBP1_ABC_ligand_bindin 35.6 2.7E+02 0.0058 23.4 8.6 64 148-218 152-218 (344)
229 PF13727 CoA_binding_3: CoA-bi 35.5 72 0.0016 23.8 4.3 31 33-63 143-173 (175)
230 cd07041 STAS_RsbR_RsbS_like Su 35.4 1.5E+02 0.0033 20.5 8.0 62 18-80 26-94 (109)
231 TIGR02320 PEP_mutase phosphoen 35.3 2.1E+02 0.0047 24.2 7.5 75 133-218 151-235 (285)
232 TIGR02617 tnaA_trp_ase tryptop 35.2 38 0.00083 30.8 3.0 55 150-218 334-388 (467)
233 PF00763 THF_DHG_CYH: Tetrahyd 35.2 1E+02 0.0022 22.2 4.9 43 144-191 41-83 (117)
234 TIGR01158 SUI1_rel translation 35.2 67 0.0015 22.8 3.7 23 195-219 74-96 (101)
235 PLN02828 formyltetrahydrofolat 35.0 2.8E+02 0.006 23.4 8.3 58 99-165 70-127 (268)
236 cd07945 DRE_TIM_CMS Leptospira 35.0 1.7E+02 0.0037 24.7 6.8 67 148-218 147-218 (280)
237 cd07937 DRE_TIM_PC_TC_5S Pyruv 34.9 1.8E+02 0.0039 24.4 6.9 68 147-218 148-219 (275)
238 PRK05568 flavodoxin; Provision 34.9 1.8E+02 0.0039 21.2 7.5 54 132-189 82-135 (142)
239 PRK01533 histidinol-phosphate 34.9 1.6E+02 0.0035 25.6 6.9 17 131-147 103-119 (366)
240 cd02067 B12-binding B12 bindin 34.9 1.6E+02 0.0036 20.7 8.6 14 152-165 41-54 (119)
241 PF02875 Mur_ligase_C: Mur lig 34.8 71 0.0015 21.5 3.8 32 34-66 15-49 (91)
242 COG1448 TyrB Aspartate/tyrosin 34.3 3.2E+02 0.0069 24.4 8.4 77 132-213 119-233 (396)
243 COG2247 LytB Putative cell wal 34.2 1.1E+02 0.0024 26.5 5.5 53 155-217 94-155 (337)
244 cd04795 SIS SIS domain. SIS (S 34.2 1.3E+02 0.0028 19.5 5.0 33 131-165 46-78 (87)
245 COG0300 DltE Short-chain dehyd 33.6 1.5E+02 0.0032 25.0 6.1 44 32-77 6-49 (265)
246 TIGR03538 DapC_gpp succinyldia 33.6 3.2E+02 0.007 23.7 10.2 99 101-217 91-199 (393)
247 cd06389 PBP1_iGluR_AMPA_GluR2 33.6 2.1E+02 0.0045 24.9 7.4 69 149-219 133-203 (370)
248 cd06216 FNR_iron_sulfur_bindin 33.6 2.5E+02 0.0055 22.5 11.9 109 100-218 123-235 (243)
249 PLN02651 cysteine desulfurase 33.5 3.1E+02 0.0066 23.6 8.4 79 131-217 86-169 (364)
250 TIGR01753 flav_short flavodoxi 33.3 1.8E+02 0.004 20.8 9.8 55 132-189 80-135 (140)
251 COG2875 CobM Precorrin-4 methy 32.9 2.8E+02 0.0061 23.1 7.4 72 132-218 28-105 (254)
252 PRK13413 mpi multiple promoter 32.9 2.4E+02 0.0053 22.1 8.6 69 147-217 16-92 (200)
253 PLN02271 serine hydroxymethylt 32.7 1.1E+02 0.0023 29.0 5.5 43 175-217 282-327 (586)
254 cd06363 PBP1_Taste_receptor Li 32.7 1.7E+02 0.0037 25.7 6.8 65 150-218 193-260 (410)
255 TIGR00162 conserved hypothetic 32.6 2.5E+02 0.0054 22.2 8.3 85 133-219 15-113 (188)
256 PLN02623 pyruvate kinase 32.5 63 0.0014 30.4 4.1 34 152-191 126-159 (581)
257 COG0469 PykF Pyruvate kinase [ 32.2 63 0.0014 29.6 3.9 33 152-190 21-53 (477)
258 COG1619 LdcA Uncharacterized p 32.1 1.6E+02 0.0034 25.5 6.1 74 129-202 6-85 (313)
259 cd06454 KBL_like KBL_like; thi 31.9 3.1E+02 0.0067 23.0 9.9 72 131-217 83-163 (349)
260 PLN03226 serine hydroxymethylt 31.8 1.8E+02 0.0039 26.6 6.9 41 176-216 168-211 (475)
261 TIGR02160 PA_CoA_Oxy5 phenylac 31.8 3.3E+02 0.0072 23.4 11.9 45 175-219 186-233 (352)
262 PRK09147 succinyldiaminopimela 31.4 3.5E+02 0.0076 23.5 10.0 97 102-216 92-199 (396)
263 PF01053 Cys_Met_Meta_PP: Cys/ 31.4 3E+02 0.0064 24.4 8.0 72 131-216 92-170 (386)
264 cd02696 MurNAc-LAA N-acetylmur 31.0 1.7E+02 0.0038 22.1 5.9 49 150-202 31-79 (172)
265 COG0112 GlyA Glycine/serine hy 30.9 85 0.0019 28.0 4.4 42 175-216 150-194 (413)
266 PRK06084 O-acetylhomoserine am 30.9 3.4E+02 0.0074 24.3 8.5 75 131-217 95-174 (425)
267 cd00138 PLDc Phospholipase D. 30.8 2.3E+02 0.005 21.2 6.8 50 14-63 16-71 (176)
268 PF06792 UPF0261: Uncharacteri 30.7 1.9E+02 0.0042 25.9 6.6 57 131-196 183-240 (403)
269 PLN02483 serine palmitoyltrans 30.6 2.7E+02 0.0058 25.4 7.9 72 131-217 183-271 (489)
270 PRK01372 ddl D-alanine--D-alan 30.1 2E+02 0.0044 23.9 6.6 39 150-198 25-63 (304)
271 cd04469 S1_Hex1 S1_Hex1: Hex1, 29.9 1.1E+02 0.0025 20.4 3.9 26 15-40 30-56 (75)
272 COG1234 ElaC Metal-dependent h 29.6 38 0.00082 28.8 2.0 66 132-204 189-261 (292)
273 PF01380 SIS: SIS domain SIS d 29.6 2E+02 0.0044 20.2 5.9 34 130-165 51-84 (131)
274 TIGR01496 DHPS dihydropteroate 29.5 3.3E+02 0.0072 22.6 9.2 67 12-79 17-95 (257)
275 PF00248 Aldo_ket_red: Aldo/ke 29.5 1.9E+02 0.0041 23.8 6.2 79 132-217 99-182 (283)
276 PF07614 DUF1577: Protein of u 29.4 86 0.0019 26.2 4.0 47 17-66 129-175 (256)
277 cd00474 SUI1_eIF1 The SUI1/eIF 29.3 1E+02 0.0022 20.6 3.7 24 194-219 48-71 (77)
278 PTZ00376 aspartate aminotransf 29.2 3.9E+02 0.0085 23.4 10.8 79 131-217 122-210 (404)
279 PRK05968 hypothetical protein; 28.8 4E+02 0.0087 23.4 8.7 74 131-217 100-178 (389)
280 cd06184 flavohem_like_fad_nad_ 28.6 3.1E+02 0.0067 22.0 11.9 28 192-219 208-235 (247)
281 KOG0780 Signal recognition par 28.1 2.5E+02 0.0054 25.4 6.7 61 136-201 158-223 (483)
282 PRK05764 aspartate aminotransf 27.9 4E+02 0.0086 23.0 9.3 74 131-217 113-198 (393)
283 cd06316 PBP1_ABC_sugar_binding 27.9 3.4E+02 0.0073 22.2 9.2 14 150-163 45-58 (294)
284 COG0329 DapA Dihydrodipicolina 27.9 2E+02 0.0044 24.5 6.2 46 14-59 53-100 (299)
285 COG0274 DeoC Deoxyribose-phosp 27.6 3.4E+02 0.0074 22.3 7.0 63 148-212 140-202 (228)
286 COG2089 SpsE Sialic acid synth 27.6 4.2E+02 0.0091 23.2 9.9 17 43-59 88-104 (347)
287 TIGR02539 SepCysS Sep-tRNA:Cys 27.5 4E+02 0.0087 23.0 10.0 75 131-217 88-177 (370)
288 PRK09389 (R)-citramalate synth 27.5 3.5E+02 0.0077 24.8 8.0 82 133-218 127-213 (488)
289 COG4882 Predicted aminopeptida 27.4 63 0.0014 28.7 2.9 49 19-67 76-125 (486)
290 COG2089 SpsE Sialic acid synth 27.4 1.8E+02 0.0039 25.4 5.7 39 25-63 140-179 (347)
291 TIGR03217 4OH_2_O_val_ald 4-hy 27.2 3.2E+02 0.0069 23.7 7.3 43 150-192 26-76 (333)
292 TIGR03855 NAD_NadX aspartate d 27.1 2.7E+02 0.0059 22.7 6.6 49 15-64 45-95 (229)
293 PLN02746 hydroxymethylglutaryl 27.1 2.6E+02 0.0057 24.5 6.8 66 149-218 198-268 (347)
294 TIGR02804 ExbD_2 TonB system t 26.9 2.1E+02 0.0046 20.5 5.4 44 14-59 68-112 (121)
295 PRK08636 aspartate aminotransf 26.9 2.9E+02 0.0063 24.2 7.3 53 15-67 156-217 (403)
296 cd06337 PBP1_ABC_ligand_bindin 26.6 4.1E+02 0.0088 22.7 8.6 64 152-219 167-230 (357)
297 PF01212 Beta_elim_lyase: Beta 26.5 91 0.002 26.5 3.8 57 14-71 105-171 (290)
298 COG1737 RpiR Transcriptional r 26.4 3.9E+02 0.0084 22.4 8.7 34 130-165 175-208 (281)
299 PRK06855 aminotransferase; Val 26.4 4.6E+02 0.01 23.3 9.6 94 103-217 99-205 (433)
300 TIGR01859 fruc_bis_ald_ fructo 26.3 4E+02 0.0087 22.5 17.6 150 32-202 14-181 (282)
301 PF01116 F_bP_aldolase: Fructo 26.2 1.3E+02 0.0027 25.7 4.6 33 32-64 15-47 (287)
302 PF01555 N6_N4_Mtase: DNA meth 26.2 1.9E+02 0.004 22.5 5.5 55 16-76 176-230 (231)
303 TIGR02006 IscS cysteine desulf 26.2 4.4E+02 0.0096 23.0 9.2 78 132-217 91-173 (402)
304 PF01520 Amidase_3: N-acetylmu 26.1 1.8E+02 0.0038 22.0 5.1 48 150-201 30-77 (175)
305 PRK07568 aspartate aminotransf 26.1 4.3E+02 0.0093 22.8 9.4 77 131-217 110-196 (397)
306 cd01310 TatD_DNAse TatD like p 26.1 2.4E+02 0.0053 22.4 6.2 43 151-201 111-153 (251)
307 PF02670 DXP_reductoisom: 1-de 26.0 2.3E+02 0.0051 21.0 5.4 43 152-201 13-57 (129)
308 PRK07049 methionine gamma-lyas 25.9 4.8E+02 0.01 23.3 8.8 74 131-214 120-202 (427)
309 cd07937 DRE_TIM_PC_TC_5S Pyruv 25.8 3.3E+02 0.0071 22.8 7.0 31 33-63 106-136 (275)
310 PRK08462 biotin carboxylase; V 25.8 2.3E+02 0.0049 25.4 6.4 38 180-217 65-102 (445)
311 PRK13210 putative L-xylulose 5 25.6 3.7E+02 0.0081 22.0 8.2 14 152-165 98-111 (284)
312 TIGR02801 tolR TolR protein. T 25.6 2.6E+02 0.0057 20.2 5.9 43 17-59 77-121 (129)
313 PRK14171 bifunctional 5,10-met 25.6 3.6E+02 0.0078 23.0 7.1 40 147-191 47-86 (288)
314 cd03030 GRX_SH3BGR Glutaredoxi 25.5 1.8E+02 0.004 20.0 4.6 65 136-208 3-80 (92)
315 TIGR01860 VNFD nitrogenase van 25.5 4.9E+02 0.011 23.6 8.5 72 133-218 202-274 (461)
316 cd07948 DRE_TIM_HCS Saccharomy 25.5 4E+02 0.0086 22.2 9.7 82 133-218 125-211 (262)
317 cd06364 PBP1_CaSR Ligand-bindi 25.4 4.4E+02 0.0096 24.1 8.4 65 149-218 203-270 (510)
318 TIGR00097 HMP-P_kinase phospho 25.3 2.9E+02 0.0064 22.4 6.6 52 14-65 49-101 (254)
319 cd00946 FBP_aldolase_IIA Class 25.3 1.9E+02 0.0041 25.4 5.5 33 32-64 14-46 (345)
320 cd01173 pyridoxal_pyridoxamine 25.2 3.2E+02 0.0069 22.1 6.8 56 10-65 47-110 (254)
321 cd06312 PBP1_ABC_sugar_binding 25.1 3.6E+02 0.0078 21.6 9.4 17 149-165 45-61 (271)
322 PRK12738 kbaY tagatose-bisphos 25.0 1.8E+02 0.0039 24.8 5.2 33 32-64 16-48 (286)
323 COG3967 DltE Short-chain dehyd 25.0 2.5E+02 0.0053 23.1 5.7 43 31-75 4-46 (245)
324 PRK09028 cystathionine beta-ly 24.8 5E+02 0.011 23.1 10.2 75 131-217 98-177 (394)
325 PRK00939 translation initiatio 24.7 1E+02 0.0022 21.8 3.1 24 195-220 73-96 (99)
326 TIGR02884 spore_pdaA delta-lac 24.6 2.7E+02 0.0059 22.4 6.2 67 152-218 143-216 (224)
327 PF03446 NAD_binding_2: NAD bi 24.5 2.1E+02 0.0046 21.6 5.3 17 147-163 140-156 (163)
328 KOG2653 6-phosphogluconate deh 24.5 5.2E+02 0.011 23.2 10.5 100 51-165 22-127 (487)
329 cd07938 DRE_TIM_HMGL 3-hydroxy 24.5 4.2E+02 0.0091 22.2 7.9 67 148-218 149-220 (274)
330 COG1064 AdhP Zn-dependent alco 24.4 4.8E+02 0.01 22.8 8.1 137 33-199 168-308 (339)
331 PRK15482 transcriptional regul 24.4 4.1E+02 0.009 22.0 8.6 34 130-165 180-213 (285)
332 PRK06111 acetyl-CoA carboxylas 24.2 3.3E+02 0.0071 24.2 7.2 39 179-217 62-100 (450)
333 COG1540 Uncharacterized protei 23.9 73 0.0016 26.4 2.5 20 194-213 219-238 (252)
334 PRK15408 autoinducer 2-binding 23.8 4.7E+02 0.01 22.4 9.3 15 151-165 70-84 (336)
335 cd05008 SIS_GlmS_GlmD_1 SIS (S 23.7 2.1E+02 0.0045 20.2 4.9 34 130-165 44-77 (126)
336 TIGR03853 matur_matur probable 23.7 2.4E+02 0.0052 19.0 4.9 45 12-59 15-59 (77)
337 cd00952 CHBPH_aldolase Trans-o 23.6 2.4E+02 0.0052 24.1 5.9 47 14-60 57-105 (309)
338 PRK08654 pyruvate carboxylase 23.6 3.7E+02 0.0079 24.8 7.4 39 179-217 62-100 (499)
339 TIGR00655 PurU formyltetrahydr 23.6 4.5E+02 0.0098 22.2 8.5 24 100-123 85-108 (280)
340 TIGR00167 cbbA ketose-bisphosp 23.5 1.9E+02 0.004 24.7 5.1 33 32-64 16-48 (288)
341 cd05017 SIS_PGI_PMI_1 The memb 23.5 2.2E+02 0.0048 20.2 4.9 50 130-191 41-90 (119)
342 COG1237 Metal-dependent hydrol 23.5 3.4E+02 0.0073 22.8 6.4 79 132-216 165-245 (259)
343 PRK12815 carB carbamoyl phosph 23.4 4E+02 0.0086 27.2 8.1 66 151-217 579-655 (1068)
344 PRK12581 oxaloacetate decarbox 23.3 2.9E+02 0.0062 25.4 6.5 68 147-218 162-233 (468)
345 cd03174 DRE_TIM_metallolyase D 23.3 4E+02 0.0088 21.5 16.0 68 147-218 145-217 (265)
346 PRK14184 bifunctional 5,10-met 23.2 3.6E+02 0.0078 23.0 6.7 35 152-191 51-85 (286)
347 PRK07998 gatY putative fructos 23.2 2.2E+02 0.0047 24.3 5.4 34 32-65 16-49 (283)
348 PF01740 STAS: STAS domain; I 23.2 2.7E+02 0.0057 19.4 7.5 64 16-80 23-101 (117)
349 TIGR00872 gnd_rel 6-phosphoglu 23.2 4.5E+02 0.0098 22.1 11.4 101 49-165 14-115 (298)
350 COG1387 HIS2 Histidinol phosph 22.9 1.6E+02 0.0034 24.2 4.4 21 46-66 148-168 (237)
351 PRK09195 gatY tagatose-bisphos 22.8 2.1E+02 0.0046 24.3 5.3 33 32-64 16-48 (284)
352 cd06374 PBP1_mGluR_groupI Liga 22.7 5.5E+02 0.012 23.0 8.4 66 149-218 202-271 (472)
353 PRK08610 fructose-bisphosphate 22.6 2.2E+02 0.0047 24.3 5.3 33 32-64 16-48 (286)
354 PRK05692 hydroxymethylglutaryl 22.6 4.7E+02 0.01 22.1 8.9 68 147-218 154-226 (287)
355 TIGR00228 ruvC crossover junct 22.5 66 0.0014 24.8 2.0 38 153-190 85-126 (156)
356 cd06317 PBP1_ABC_sugar_binding 22.5 4E+02 0.0087 21.2 8.7 14 151-164 46-59 (275)
357 PF14062 DUF4253: Domain of un 22.5 2.8E+02 0.0061 19.8 5.2 53 145-197 28-86 (111)
358 cd01477 vWA_F09G8-8_type VWA F 22.5 2.8E+02 0.006 21.8 5.7 39 152-195 152-190 (193)
359 cd01993 Alpha_ANH_like_II This 22.4 1.9E+02 0.0041 21.9 4.7 33 44-76 92-124 (185)
360 TIGR03586 PseI pseudaminic aci 22.4 5.2E+02 0.011 22.4 11.9 137 44-199 76-222 (327)
361 TIGR00683 nanA N-acetylneurami 22.4 2.7E+02 0.0059 23.4 5.9 46 14-59 50-97 (290)
362 cd00617 Tnase_like Tryptophana 22.4 5.8E+02 0.013 23.0 9.0 109 92-217 60-187 (431)
363 cd06394 PBP1_iGluR_Kainate_KA1 22.3 5.1E+02 0.011 22.3 8.6 31 188-219 183-213 (333)
364 PRK12857 fructose-1,6-bisphosp 22.2 2E+02 0.0043 24.5 5.0 33 32-64 16-48 (284)
365 PRK05835 fructose-bisphosphate 22.2 2.2E+02 0.0047 24.6 5.2 33 32-64 15-47 (307)
366 PLN02417 dihydrodipicolinate s 22.2 2.6E+02 0.0056 23.4 5.7 49 14-62 50-100 (280)
367 TIGR03573 WbuX N-acetyl sugar 22.1 2.7E+02 0.0059 24.1 6.0 34 38-71 140-173 (343)
368 COG2266 GTP:adenosylcobinamide 22.1 2.3E+02 0.0051 22.3 5.0 38 154-198 56-94 (177)
369 TIGR02026 BchE magnesium-proto 22.1 2.8E+02 0.0062 25.4 6.4 49 15-66 50-100 (497)
370 COG3636 Predicted transcriptio 22.1 39 0.00085 23.9 0.6 44 15-59 18-61 (100)
371 cd06380 PBP1_iGluR_AMPA N-term 22.0 5.1E+02 0.011 22.2 8.7 63 150-218 142-209 (382)
372 COG0421 SpeE Spermidine syntha 22.0 1.9E+02 0.0041 24.6 4.8 37 1-38 153-189 (282)
373 PLN02516 methylenetetrahydrofo 21.9 4.2E+02 0.0091 22.7 6.9 39 148-191 55-93 (299)
374 PRK06423 phosphoribosylformylg 21.8 2.4E+02 0.0052 18.4 5.0 49 143-192 10-63 (73)
375 PF00731 AIRC: AIR carboxylase 21.8 3.7E+02 0.008 20.5 7.5 48 150-202 16-66 (150)
376 cd06183 cyt_b5_reduct_like Cyt 21.7 4E+02 0.0087 20.9 9.7 28 192-219 200-228 (234)
377 PF07485 DUF1529: Domain of Un 21.7 3.4E+02 0.0073 20.0 5.7 43 147-189 67-118 (123)
378 TIGR03407 urea_ABC_UrtA urea A 21.7 3.9E+02 0.0085 22.8 7.0 65 150-218 151-215 (359)
379 TIGR01858 tag_bisphos_ald clas 21.7 2.3E+02 0.0049 24.1 5.2 33 32-64 14-46 (282)
380 PRK12330 oxaloacetate decarbox 21.6 2.2E+02 0.0048 26.3 5.5 69 146-218 153-227 (499)
381 PRK07315 fructose-bisphosphate 21.6 2.3E+02 0.0049 24.2 5.3 33 32-64 16-48 (293)
382 COG4091 Predicted homoserine d 21.6 5.9E+02 0.013 22.8 11.6 80 135-218 152-237 (438)
383 cd00953 KDG_aldolase KDG (2-ke 21.5 3.7E+02 0.008 22.5 6.6 45 14-59 48-92 (279)
384 PRK12737 gatY tagatose-bisphos 21.5 2.3E+02 0.005 24.1 5.2 33 32-64 16-48 (284)
385 TIGR01370 cysRS possible cyste 21.3 4.4E+02 0.0096 22.8 7.0 64 3-68 234-307 (315)
386 cd01320 ADA Adenosine deaminas 21.3 3.6E+02 0.0078 22.8 6.6 62 148-217 173-235 (325)
387 COG2145 ThiM Hydroxyethylthiaz 21.2 2.6E+02 0.0057 23.5 5.3 41 23-64 48-91 (265)
388 COG0683 LivK ABC-type branched 21.1 5.4E+02 0.012 22.2 8.1 80 135-219 151-230 (366)
389 PRK09196 fructose-1,6-bisphosp 21.0 2.4E+02 0.0051 24.8 5.3 34 32-65 16-49 (347)
390 cd06393 PBP1_iGluR_Kainate_Glu 21.0 4.1E+02 0.0089 23.0 7.0 60 152-219 157-219 (384)
391 PF03447 NAD_binding_3: Homose 20.9 2E+02 0.0044 20.2 4.3 41 25-67 52-92 (117)
392 TIGR02855 spore_yabG sporulati 20.9 3.7E+02 0.008 22.9 6.2 49 145-198 112-160 (283)
393 PRK13397 3-deoxy-7-phosphohept 20.9 5E+02 0.011 21.7 11.0 54 14-68 25-89 (250)
394 PRK13789 phosphoribosylamine-- 20.9 2.5E+02 0.0054 25.2 5.7 41 177-218 54-94 (426)
395 cd06361 PBP1_GPC6A_like Ligand 20.9 3.4E+02 0.0074 23.9 6.5 68 147-218 186-260 (403)
396 cd06368 PBP1_iGluR_non_NMDA_li 20.7 3.6E+02 0.0077 22.4 6.4 60 151-218 144-206 (324)
397 PRK11524 putative methyltransf 20.7 3.3E+02 0.0071 22.8 6.1 54 18-77 195-248 (284)
398 PF01565 FAD_binding_4: FAD bi 20.7 2E+02 0.0044 20.7 4.3 29 39-67 5-33 (139)
399 PRK03321 putative aminotransfe 20.6 2.4E+02 0.0052 24.0 5.4 58 131-199 96-153 (352)
400 cd06323 PBP1_ribose_binding Pe 20.6 4.3E+02 0.0093 20.8 8.9 13 151-163 45-57 (268)
401 COG1636 Uncharacterized protei 20.6 4.2E+02 0.0091 21.3 6.1 63 146-219 45-113 (204)
402 PRK13604 luxD acyl transferase 20.6 4.5E+02 0.0098 22.6 6.9 65 132-203 36-117 (307)
403 PLN02721 threonine aldolase 20.6 2.7E+02 0.006 23.4 5.7 24 43-66 156-179 (353)
404 TIGR00010 hydrolase, TatD fami 20.5 3E+02 0.0064 21.9 5.7 35 28-65 24-60 (252)
405 PRK14188 bifunctional 5,10-met 20.5 4.6E+02 0.01 22.4 6.9 37 150-191 50-86 (296)
406 PRK14463 ribosomal RNA large s 20.4 2.4E+02 0.0053 24.6 5.4 16 203-218 301-316 (349)
407 PRK06107 aspartate aminotransf 20.4 5.8E+02 0.013 22.2 8.6 96 103-216 96-200 (402)
408 cd06381 PBP1_iGluR_delta_like 20.4 5.7E+02 0.012 22.2 8.5 63 150-218 154-225 (363)
409 cd04724 Tryptophan_synthase_al 20.3 2.6E+02 0.0057 22.8 5.3 36 181-218 94-131 (242)
410 PRK02399 hypothetical protein; 20.2 3.9E+02 0.0084 24.1 6.5 49 132-189 185-234 (406)
411 PRK08175 aminotransferase; Val 20.2 3.6E+02 0.0078 23.5 6.5 25 43-67 182-206 (395)
412 PF01136 Peptidase_U32: Peptid 20.2 2.9E+02 0.0063 22.1 5.5 47 154-207 53-100 (233)
413 PF05889 SLA_LP_auto_ag: Solub 20.1 2.3E+02 0.0051 25.3 5.1 66 16-82 140-215 (389)
414 PF11079 YqhG: Bacterial prote 20.1 1.2E+02 0.0025 25.5 3.0 19 46-64 87-105 (260)
415 PRK06806 fructose-bisphosphate 20.1 2.6E+02 0.0056 23.7 5.3 33 32-64 16-48 (281)
416 TIGR03023 WcaJ_sugtrans Undeca 20.1 3.3E+02 0.0072 24.4 6.3 45 22-66 181-226 (451)
417 PF13528 Glyco_trans_1_3: Glyc 20.0 1.9E+02 0.0042 24.0 4.6 55 151-217 242-296 (318)
No 1
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=100.00 E-value=4.5e-50 Score=360.39 Aligned_cols=219 Identities=37% Similarity=0.633 Sum_probs=210.7
Q ss_pred CccccCCCCCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHHHHcCCeEEEEcccHHHHHHHHHHCCC
Q 045468 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGK 80 (221)
Q Consensus 1 Li~EsT~~~~~~~~~sE~~v~~~i~~~~~~~~g~viv~~~a~ni~Rl~~i~~~a~~~gR~~vi~~~~~~~~~~~~~~~g~ 80 (221)
|||||||+.+++.+.||+++.+.+.+++.+++|||+|+||++|++|+|+++++|.++||+++++|++|..+...+.+.|+
T Consensus 195 LisdsTna~~pg~t~SE~~v~~~l~~i~~~a~grVIv~tfaSni~Ri~~i~~~A~~~gR~vvv~GrSm~~~~~~a~~lg~ 274 (555)
T COG0595 195 LISDSTNAENPGFTPSESEVGENLEDIIRNAKGRVIVTTFASNIERIQTIIDAAEKLGRKVVVTGRSMERLIAIARRLGY 274 (555)
T ss_pred EEeCCcccCCCCCCCCHHHHHHHHHHHHHhCCCcEEEEEchhhHHHHHHHHHHHHHcCCeEEEEcHhHHHHHHHHhhccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccChhhhhhcCCCCEEEEecCCCccHHHHHHHHhcCCCCCcccCCCCEEEEEecCCCCcHHHHHHHHHHHHHc
Q 045468 81 APIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEI 160 (221)
Q Consensus 81 ~~~~~~~~v~~~~~~~~~~~~~vi~~~g~~~e~~~~l~~~~~~~~~~~~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~ 160 (221)
+..+++.+++.++++.++.++++++|||+||||++.|.+++.++|..+++.++|++|||+.++||+|.....+.|+|.+.
T Consensus 275 ~~~~~~~~i~~~~~~~~~~~~~lii~TG~qgep~aaL~r~a~~~h~~~~i~~gD~vIfss~~ipgne~~~~~~~n~l~~~ 354 (555)
T COG0595 275 LKLPDESFIEIREVKRYPDEEVLIICTGSQGEPMAALSRMANGEHRYVKIKEGDTVIFSSSPIPGNEAAVYRLLNRLYKA 354 (555)
T ss_pred ccCccccccCHHHhccccccceEEEEeCCCCCchhhhhHhhcCCccceecCCCCeEEEeccCcCCcHHHHHHHHHHHHhc
Confidence 98876688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHhcCCCC
Q 045468 161 GSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGIRH 219 (221)
Q Consensus 161 g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~~~~~~~~~~~~~~g~~~ 219 (221)
|++++......+|+||||+++||+.|++.++|+++||||||++++.+|+++|.++|++.
T Consensus 355 g~~i~~~~~~~~hvSGHas~eel~~mi~~l~Pky~iPvHGeyr~~~~~a~la~~~G~~~ 413 (555)
T COG0595 355 GAKVITGGDKKVHVSGHASREELKLMINLLRPKYLIPVHGEYRMLVAHAKLAEEEGIPQ 413 (555)
T ss_pred CcEEeecccceeEecCCCChHHHHHHHHhhCCceecccCCCcHHHHHHHHHHHhcCCCc
Confidence 99999765567999999999999999999999999999999999999999999999865
No 2
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=100.00 E-value=1.8e-45 Score=326.71 Aligned_cols=215 Identities=35% Similarity=0.560 Sum_probs=201.2
Q ss_pred CccccCCCCCCCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHHHHcCCeEEEEcccHHHHHHHHHHCCC
Q 045468 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGK 80 (221)
Q Consensus 1 Li~EsT~~~~~~~~~sE~~v~~~i~~~~~~~~g~viv~~~a~ni~Rl~~i~~~a~~~gR~~vi~~~~~~~~~~~~~~~g~ 80 (221)
||+|||++++++++.+|+.+.+.+.++++++++++++++|++|++|+|+++++|+++||+++++|+++..+++.+.+.|+
T Consensus 187 Li~EsT~~~~~~~~~~e~~~~~~i~~~~~~~~~~viv~~fa~~~~R~~~i~~~a~~~~r~v~v~g~~~~~~~~~~~~~g~ 266 (422)
T TIGR00649 187 LISDSTNVENPGFTPSEAKVLEQLNDIFKNAKGRVIVATFASNIHRVQQLIQIARKQGRKFAVYGRSMEHLFGIARRLGL 266 (422)
T ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEccccHHHHHHHHHHHHHhCCEEEEECccHHHHHHHHHHcCC
Confidence 68999999988888999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccChhhhhhcCCCCEEEEecCCCccHHHHHHHHhcCCCCCcccCCCCEEEEEecCCCCcH-HHHHHHHH-HHH
Q 045468 81 APIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGGSHSLKLTNEDVILYSAKVIPGNE-SRVMKMLN-RIS 158 (221)
Q Consensus 81 ~~~~~~~~v~~~~~~~~~~~~~vi~~~g~~~e~~~~l~~~~~~~~~~~~~~~~~~vI~s~~~~pg~e-~~~~~~~~-~l~ 158 (221)
++.++...++.+++++.+++++++++||+||+++++|.+++.+++..++++++|+||||+..+||+| .....+.| |+.
T Consensus 267 ~~~~~~~~~~~~~i~~~~~~~~vii~tg~~g~~~~~l~~~~~~~~~~i~l~~~d~vi~s~~~~~G~~~~~~~~~~~~~~~ 346 (422)
T TIGR00649 267 IKNPHNNFISLKEVNNSPDENYLIITTGSQGEPYAALTRIANNEHEQIRIRKGDTVVFSAPPIPGNENIAVSILLDIRLN 346 (422)
T ss_pred ccCCccceeCHHHHhcCCcccEEEEEeCCCCcHHHHHHHHhCCCCCcEEeCCCCEEEEECCCCCcHHHHHHHHHHHHHHH
Confidence 8876666778889998888899999999999999999999999999999999999999999999998 67777788 999
Q ss_pred HcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHhcCCCC
Q 045468 159 EIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGIRH 219 (221)
Q Consensus 159 ~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~~~~~~~~~~~~~~g~~~ 219 (221)
+.|++++. .+|+||||+++||+.|++.++||++||||||++++.+|+++|+++|+++
T Consensus 347 ~~~~~~~~----~~h~SgHa~~~dl~~~i~~~~Pk~~ipvHge~~~~~~~~~~a~~~g~~~ 403 (422)
T TIGR00649 347 EVGARVIK----RIHVSGHASQEDHKLLLRLLKPKYIIPVHGEYRMLINHTKLAEEEGYPG 403 (422)
T ss_pred hcCCEEEe----ceEecCCCCHHHHHHHHHHhCCCEEEecCCcHHHHHHHHHHHHHcCCCc
Confidence 99999862 5899999999999999999999999999999999999999999999963
No 3
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.80 E-value=4.4e-18 Score=157.23 Aligned_cols=203 Identities=17% Similarity=0.195 Sum_probs=129.2
Q ss_pred CccccCCCCCCCCCCCH----HHHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHHHHc---CC----eEEEEcccHH
Q 045468 1 MMSDSTNVLSPGRTTSE----SVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLT---GR----KLVFVGMSLR 69 (221)
Q Consensus 1 Li~EsT~~~~~~~~~sE----~~v~~~i~~~~~~~~g~viv~~~a~ni~Rl~~i~~~a~~~---gR----~~vi~~~~~~ 69 (221)
||+||||+++.....+. .++.+.+.+++. .+|.|+||+|+ ++|.|+++.+..++ |+ +++++|+..
T Consensus 368 LI~ESTYg~~~~~~~~r~~~e~~l~~~I~~tl~-~gG~VLIP~fa--vGR~QEll~~L~~~~~~g~lp~~pIy~dg~~~- 443 (630)
T TIGR03675 368 LIMESTYGGRDDYQPSREEAEKELIKVVNETIK-RGGKVLIPVFA--VGRAQEVMLVLEEAMRKGLIPEVPVYLDGMIW- 443 (630)
T ss_pred EEEeCccCCCCCCCCCHHHHHHHHHHHHHHHHh-CCCEEEEEech--hHHHHHHHHHHHHHHHhCCCCCCcEEEEchHH-
Confidence 68999999875333344 445555555553 58899999999 99999998876653 43 677887443
Q ss_pred HHHHHHHH---------------CCCCCCCCCC--cc-Chhh---hhhcCCCCEEEEe-cCC--CccHHHHHHHHhcCCC
Q 045468 70 TYLDAAWK---------------DGKAPIDPST--LV-KVED---IDAYAPKDLLIVT-TGS--QAEPRAALNLASYGGS 125 (221)
Q Consensus 70 ~~~~~~~~---------------~g~~~~~~~~--~v-~~~~---~~~~~~~~~vi~~-~g~--~~e~~~~l~~~~~~~~ 125 (221)
..++...+ .+.-++.... ++ +.++ +...+. .+||++ +|| .|....+|..++.+
T Consensus 444 ~~t~i~~~~~e~l~~~~~~~i~~~~~npf~~~~~~~v~~~~~~~~i~~~~~-p~VIiatsGMl~gG~~~~~l~~l~~d-- 520 (630)
T TIGR03675 444 EATAIHTAYPEYLNKELRERIFHEGENPFLSEIFVRVEGSDERREIIESDE-PAIILATSGMLNGGPVVEYLKLLAPD-- 520 (630)
T ss_pred HHHHHHHHhHHHhCHHHHHHHhhcCCCcccCCceEEeCCHHHHHHHhcCCC-CEEEEECCCCCCcchHHHHHHHHcCC--
Confidence 33332211 1111111111 12 2222 222233 445554 465 36668888888775
Q ss_pred CCcccCCCCEEEEEecCCCCcHHHHHHHHHHHHH---cC---CeEEe--cCCceee-eecCCCHHHHHHHHHHcCC--CE
Q 045468 126 HSLKLTNEDVILYSAKVIPGNESRVMKMLNRISE---IG---STIVM--GRNEGLH-TSGHGYRGELEEVLKLVKP--QH 194 (221)
Q Consensus 126 ~~~~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~---~g---~~v~~--~~~~~~h-~SGHA~~~dL~~~i~~i~P--k~ 194 (221)
+.+++||.+|+++|+-.. ++++.... .| .+.+. .....+. +||||++.||.+|++.++| +.
T Consensus 521 ------~kn~IifvGyqa~gTlGr--~l~~g~~~i~i~g~~~~~~i~v~~~V~~~~gfSaHaD~~~L~~~v~~~~p~p~~ 592 (630)
T TIGR03675 521 ------PRNSLVFVGYQAEGTLGR--RIQSGWREIPLTDEGKTETIKINMEVETVEGFSGHSDRRQLMNYVRRMQPKPEK 592 (630)
T ss_pred ------CCCeEEEeCCCCCCchHH--HHhcCCcEEEecCCCCceEEEEEEEEEEeCCccccCCHHHHHHHHHhcCCCCCE
Confidence 789999999999998653 44442111 11 01110 0111333 8999999999999999965 99
Q ss_pred EEEcCCChHHHHHHHHHHH-hcCCC
Q 045468 195 FLPIHGELLFLKEHELLGR-STGIR 218 (221)
Q Consensus 195 iiPVHge~~~~~~~~~~~~-~~g~~ 218 (221)
++-||||...+..+++.++ +.|++
T Consensus 593 v~lvHGe~~~~~~la~~l~~~~~~~ 617 (630)
T TIGR03675 593 ILLNHGEPSKILDLASSIYKKFNIE 617 (630)
T ss_pred EEEEcCCHHHHHHHHHHHHHHhCCc
Confidence 9999999999999999876 44763
No 4
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=99.79 E-value=1.5e-18 Score=151.48 Aligned_cols=201 Identities=16% Similarity=0.194 Sum_probs=131.8
Q ss_pred CccccCCCCCCCC----CCCHHHHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHHHHc---CC----eEEEEcccHH
Q 045468 1 MMSDSTNVLSPGR----TTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLT---GR----KLVFVGMSLR 69 (221)
Q Consensus 1 Li~EsT~~~~~~~----~~sE~~v~~~i~~~~~~~~g~viv~~~a~ni~Rl~~i~~~a~~~---gR----~~vi~~~~~~ 69 (221)
||+||||.+++.. ...|.++.+.+++++. .+|.|+||+|| ++|-|+++-+..++ |+ +++++|+-..
T Consensus 374 limEsTYGg~~d~q~~R~eaE~~L~~vi~~t~~-rGGKvLIP~fA--VGR~QEvM~VLee~mr~g~ipe~PVYlDGMI~E 450 (637)
T COG1782 374 LIMESTYGGRDDVQPPREEAEKELIKVINDTLK-RGGKVLIPVFA--VGRSQEVMIVLEEAMRKGLIPEVPVYLDGMIWE 450 (637)
T ss_pred eeeeeccCCccccCccHHHHHHHHHHHHHHHHh-cCCeEEEEeee--ccccceehhHHHHHHhcCCCCCCceeeeeeeee
Confidence 7899999977543 3456667777777764 48999999999 99999998875554 55 7788887643
Q ss_pred HHH---------H-HHHH----CCCCCCCCCCcc---Chh---hhhhcCCCCEEEEecCC--CccHHHHHHHHhcCCCCC
Q 045468 70 TYL---------D-AAWK----DGKAPIDPSTLV---KVE---DIDAYAPKDLLIVTTGS--QAEPRAALNLASYGGSHS 127 (221)
Q Consensus 70 ~~~---------~-~~~~----~g~~~~~~~~~v---~~~---~~~~~~~~~~vi~~~g~--~~e~~~~l~~~~~~~~~~ 127 (221)
... + -+.+ .|.=+|-...|. +.+ ++...+.+.+++.++|| .|..+.+++.++-+
T Consensus 451 atAIhtaYPEyL~~~lr~~I~~~g~NPF~se~f~~V~~~~~r~~i~~~~ep~iIlaTSGMlnGGPvveyfk~lA~D---- 526 (637)
T COG1782 451 ATAIHTAYPEYLNKELRERIFHEGENPFLSEIFKRVEGSDERQEIIESDEPAIILATSGMLNGGPVVEYFKHLAPD---- 526 (637)
T ss_pred hhhhhhcCHHhhhHHHHHHHhcCCCCCccccceeecCChhHHHHHhcCCCCeEEEeccccccCCcHHHHHHHhCCC----
Confidence 211 1 1111 121112111221 111 22232344545555566 46679999988875
Q ss_pred cccCCCCEEEEEecCCCCcHHHHHHHHHHHH------HcC-CeEEecCC---ceeeeecCCCHHHHHHHHHHcC--CCEE
Q 045468 128 LKLTNEDVILYSAKVIPGNESRVMKMLNRIS------EIG-STIVMGRN---EGLHTSGHGYRGELEEVLKLVK--PQHF 195 (221)
Q Consensus 128 ~~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~------~~g-~~v~~~~~---~~~h~SGHA~~~dL~~~i~~i~--Pk~i 195 (221)
|++++||.+||++|+-.+ ++.+-.. .-| .+++..++ ---.||||+++.+|.++++.++ |+++
T Consensus 527 ----prntliFVgYQAeGTLGR--riq~G~kEipi~~~~G~te~i~inMeV~tieGFSGHsdrrqL~~yvr~~~PkP~ki 600 (637)
T COG1782 527 ----PKNTLIFVGYQAEGTLGR--RIQSGAKEIPIPGEDGKTEVIKVNMEVETIEGFSGHSDRRQLMKYVRRMNPKPEKI 600 (637)
T ss_pred ----CCceEEEEEeccCcchhh--hhhcCceecccccCCCCeEEEEEEEEEEEecCcCCCccHHHHHHHHHhcCCCCcee
Confidence 899999999999998653 2222111 111 11111110 1356899999999999999996 5799
Q ss_pred EEcCCChHHHHHHHHHHHh
Q 045468 196 LPIHGELLFLKEHELLGRS 214 (221)
Q Consensus 196 iPVHge~~~~~~~~~~~~~ 214 (221)
+-+|||...+.+++..++.
T Consensus 601 ~~~HGe~sk~~~lA~si~~ 619 (637)
T COG1782 601 LLNHGEPSKCLDLASSIRR 619 (637)
T ss_pred EeecCChHHHHHHHHHHHh
Confidence 9999999999999997763
No 5
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=1.2e-13 Score=122.86 Aligned_cols=204 Identities=18% Similarity=0.126 Sum_probs=131.2
Q ss_pred CccccCCCCCCC--CCCCHHHHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHHHHcC----CeEEEEcccHHHHHHH
Q 045468 1 MMSDSTNVLSPG--RTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTG----RKLVFVGMSLRTYLDA 74 (221)
Q Consensus 1 Li~EsT~~~~~~--~~~sE~~v~~~i~~~~~~~~g~viv~~~a~ni~Rl~~i~~~a~~~g----R~~vi~~~~~~~~~~~ 74 (221)
||+||||+++.. +...|.++.+.+.+.+.+ +|.|++|+|+ ++|.|+++.+....+ -++++++.- +.....
T Consensus 184 LI~EsTYg~~~~~~r~~~e~~f~~~v~~~l~~-GG~vlipafa--~graQEll~~L~~~~~~~~~pi~~d~~~-a~~~~~ 259 (427)
T COG1236 184 LIVESTYGDRLHPNRDEVERRFIESVKAALER-GGTVLIPAFA--LGRAQELLLILRELGFAGDYPIYVDGPI-ARVALA 259 (427)
T ss_pred EEEecccCCccCCCHHHHHHHHHHHHHHHHhC-CCEEEEeccc--ccHHHHHHHHHHHHhccCCCCeEeccHH-HHHHHH
Confidence 689999999744 445666677788887754 6899999999 999999999999998 355565544 444444
Q ss_pred HHH-CCCCCCCCC------C--ccC-hhh--hhhcCCCCEEEEec-CC--CccHHHHHHHHhcCCCCCcccCCCCEEEEE
Q 045468 75 AWK-DGKAPIDPS------T--LVK-VED--IDAYAPKDLLIVTT-GS--QAEPRAALNLASYGGSHSLKLTNEDVILYS 139 (221)
Q Consensus 75 ~~~-~g~~~~~~~------~--~v~-~~~--~~~~~~~~~vi~~~-g~--~~e~~~~l~~~~~~~~~~~~~~~~~~vI~s 139 (221)
..+ ...+..++. . ++. ... .....+...+|+++ |+ .|...+++.++..+ +.+.+++.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~vi~a~~gm~~~g~~~~~~~~~~~~--------~~n~~~l~ 331 (427)
T COG1236 260 YAKYPIGLDLPDLLKVAESRFRFVESRRNSMREGIDKGPAVVLAAPGMLKGGRSRYYLKHLLSD--------EKNWVLLP 331 (427)
T ss_pred HHHhchhccChHHHHHHHhhcccccchhhhhhhhccCCceEEEEecccccCCcHHHHHHHHhcC--------CcceEEEc
Confidence 433 222222211 0 111 111 11112233444444 44 35567778777765 78899999
Q ss_pred ecCCCCcHHHHHHHHHH-HHHcCCeEE-ecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHhcC
Q 045468 140 AKVIPGNESRVMKMLNR-ISEIGSTIV-MGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTG 216 (221)
Q Consensus 140 ~~~~pg~e~~~~~~~~~-l~~~g~~v~-~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~~~~~~~~~~~~~~g 216 (221)
+++..|+......-..+ +.-.|.++- ....+.+.+|+||+..+|..+++.++|++++-+||+........+...+.+
T Consensus 332 ~~~~~~t~gr~~~~~~~~~~~~~~~i~~~~~ve~~~~s~Had~~~l~~~i~~~~~~~v~~~Hg~~~~~~~~~~~~~~e~ 410 (427)
T COG1236 332 GYQAEGTLGRVLLEGGTSVHIKGIEIKVKARVEELDFSAHADGDELLEFIKDISPPKVVLVHGEPEYGAALRARLLEEL 410 (427)
T ss_pred ccccCCcchhHHhcCCcEEeecceeecccceEEEeccccccCcHHHHHHHhcCCCceEEEEeCCchhhhHHHHHHHHhh
Confidence 99988875543221121 111111111 011236889999999999999999999999999999987766666555443
No 6
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=99.33 E-value=1.4e-12 Score=78.85 Aligned_cols=33 Identities=33% Similarity=0.556 Sum_probs=30.5
Q ss_pred eeeeecCCCHHHHHHHHHHcCCCEEEEcCCChH
Q 045468 171 GLHTSGHGYRGELEEVLKLVKPQHFLPIHGELL 203 (221)
Q Consensus 171 ~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~~ 203 (221)
.+++||||+++||++|++.++|+.+||||||++
T Consensus 11 ~~~fSgHad~~~L~~~i~~~~p~~vilVHGe~~ 43 (43)
T PF07521_consen 11 QIDFSGHADREELLEFIEQLNPRKVILVHGEPR 43 (43)
T ss_dssp ESGCSSS-BHHHHHHHHHHHCSSEEEEESSEHH
T ss_pred EEeecCCCCHHHHHHHHHhcCCCEEEEecCCCC
Confidence 789999999999999999999999999999964
No 7
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=99.27 E-value=5.6e-11 Score=100.03 Aligned_cols=204 Identities=16% Similarity=0.187 Sum_probs=124.0
Q ss_pred CccccCCCCC--CCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHHHHc----C--CeEEEE-ccc--HH
Q 045468 1 MMSDSTNVLS--PGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLT----G--RKLVFV-GMS--LR 69 (221)
Q Consensus 1 Li~EsT~~~~--~~~~~sE~~v~~~i~~~~~~~~g~viv~~~a~ni~Rl~~i~~~a~~~----g--R~~vi~-~~~--~~ 69 (221)
||+||||+.. .+.-..|.++.+.+.+-+.. +|+|+||.|| ++|.|++.-....+ + -++++. |-. ..
T Consensus 200 LIsESTYattiRdskr~rERdFLk~VhecVa~-GGkvlIPvFA--LGRAQElCiLLd~YWERm~lk~Piyfs~Glte~an 276 (501)
T KOG1136|consen 200 LISESTYATTIRDSKRCRERDFLKKVHECVAR-GGKVLIPVFA--LGRAQELCILLDDYWERMNLKVPIYFSSGLTEKAN 276 (501)
T ss_pred EEeeccceeeeccccchhHHHHHHHHHHHHhc-CCeEEEEeee--cchHHHHHHHHHHHHHhhccCCCccccccccchhc
Confidence 7999999974 55667899999999998765 7999999999 99999985543322 2 244442 111 00
Q ss_pred HHHHHHHH--CCCCC--CCCCCccChhhh-------hhcCCCCEEEEecCC--CccHHHHHHHHhcCCCCCcccCCCCEE
Q 045468 70 TYLDAAWK--DGKAP--IDPSTLVKVEDI-------DAYAPKDLLIVTTGS--QAEPRAALNLASYGGSHSLKLTNEDVI 136 (221)
Q Consensus 70 ~~~~~~~~--~g~~~--~~~~~~v~~~~~-------~~~~~~~~vi~~~g~--~~e~~~~l~~~~~~~~~~~~~~~~~~v 136 (221)
.+...... .+.++ +-.....+.+.+ ...+.+.++..+.|+ .|--+..+.+++.+ |.+.+
T Consensus 277 ~yyk~fiswtn~~v~k~~~~rNmfdfkhiKpfd~~~~~~pGp~VlFatPGMLhaG~SLkvFK~W~~~--------~~Nlv 348 (501)
T KOG1136|consen 277 MYYKMFISWTNENVKKKFVERNMFDFKHIKPFDRSYIEAPGPMVLFATPGMLHAGFSLKVFKKWCPD--------PLNLV 348 (501)
T ss_pred hHhhhhhhhcccchhhhhccCCccccccCChhhhhhhcCCCCEEEEcCCcccccccchHHHHhhCCC--------ccceE
Confidence 11111100 00000 000000111111 122444434444454 23345666777764 78899
Q ss_pred EEEecCCCCcHHHHHHHHHHHHHcC-----CeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHH
Q 045468 137 LYSAKVIPGNESRVMKMLNRISEIG-----STIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGELLFLKEHELL 211 (221)
Q Consensus 137 I~s~~~~pg~e~~~~~~~~~l~~~g-----~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~~~~~~~~~~ 211 (221)
|+-+|...|+-.. +++|--.+.. .++. ..-+.+-||.||+...+..+++...|+.++.||||.+.+.-+.+-
T Consensus 349 imPGYcV~GTvG~--kvl~G~~kvei~~~~~eir-l~V~~maFSaHaDAkGIm~li~~csPknVmlVHGE~~kM~~Lk~k 425 (501)
T KOG1136|consen 349 IMPGYCVAGTVGH--KVLNGATKVEIYGTKVEIR-LKVEYMAFSAHADAKGIMQLIKQCSPKNVMLVHGEKSKMKFLKEK 425 (501)
T ss_pred eecCceeccchhh--hhhCCccEEEEeeeEEEEE-EEEEEeeeccccCchhHHHHHHhcCcceEEEEeccchhhHHHHHh
Confidence 9988887776542 3333211111 1111 112368899999999999999999999999999999988877775
Q ss_pred HH-hcCCC
Q 045468 212 GR-STGIR 218 (221)
Q Consensus 212 ~~-~~g~~ 218 (221)
+. |.+++
T Consensus 426 i~~e~~ip 433 (501)
T KOG1136|consen 426 IESEFDIP 433 (501)
T ss_pred hHhhcCCc
Confidence 55 55664
No 8
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=99.05 E-value=1.4e-09 Score=96.59 Aligned_cols=194 Identities=15% Similarity=0.174 Sum_probs=120.5
Q ss_pred CccccCCCCC--CCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHHHHc-------CCeEEEEcccHHHH
Q 045468 1 MMSDSTNVLS--PGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLT-------GRKLVFVGMSLRTY 71 (221)
Q Consensus 1 Li~EsT~~~~--~~~~~sE~~v~~~i~~~~~~~~g~viv~~~a~ni~Rl~~i~~~a~~~-------gR~~vi~~~~~~~~ 71 (221)
||+|||++-. .++...|..+.+-+-.++. ++||+++|+|| ++|.|+++.+.-++ ...++.+.+++++-
T Consensus 203 li~estygv~~h~~r~~re~rlt~vIh~~v~-rGGR~L~PvFA--lgrAqELllildeyw~~h~~l~~iPiyyaSslakk 279 (668)
T KOG1137|consen 203 LITESTYGVQIHEPREEREGRLTWVIHSTVP-RGGRVLIPVFA--LGRAQELLLILDEYWGNHVDLRDIPIYYASSLAKK 279 (668)
T ss_pred EEEEeeeeEEecCchHHhhhhhhhhHHhhcc-CCCceEeeeee--cchHHHHHHHHHHHhhcchhhhcCceeehhhHHHh
Confidence 5899999865 4555677889888888875 48999999999 99999999998776 11333444333222
Q ss_pred HHH------------HHHCCCCCCCCCCcc-----Chhhhhhc--CCCCEEEEecCC-CccH-HHHHHHHhcCCCCCccc
Q 045468 72 LDA------------AWKDGKAPIDPSTLV-----KVEDIDAY--APKDLLIVTTGS-QAEP-RAALNLASYGGSHSLKL 130 (221)
Q Consensus 72 ~~~------------~~~~g~~~~~~~~~v-----~~~~~~~~--~~~~~vi~~~g~-~~e~-~~~l~~~~~~~~~~~~~ 130 (221)
.-. +.+.-.+ .+.|+ ..+.++.. ..+..++...|+ |.++ ..-+.+|+.+
T Consensus 280 cm~vfQtyv~~mnd~Irk~~~~---~Npfifk~vs~L~~~D~f~D~gP~vv~aspgmlqsglSRelfe~wcsD------- 349 (668)
T KOG1137|consen 280 CMGVFQTYVNMMNDRIRKQSAL---RNPFIFKHVSILRTGDWFDDEGPSVVMASPGMLQSGLSRELFERWCSD------- 349 (668)
T ss_pred hhhhHheehhhhhhhhHHhhcc---CCceEeeccccccccccccccCCceeEeCchHhhhhhhHHHHHHhCCC-------
Confidence 211 1110000 01121 11111111 112333443344 3444 3334577765
Q ss_pred CCCCEEEEEecCCCCcHHH-------HHHHH-HHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCCh
Q 045468 131 TNEDVILYSAKVIPGNESR-------VMKML-NRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGEL 202 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~-------~~~~~-~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~ 202 (221)
+.+.+|..++.+.|+-.. +...+ +.-..+.+.|. .+-||.|.+..+=.++++.++|+++|-||||-
T Consensus 350 -~kN~vlipGy~Vegtlak~il~eP~eI~a~~G~klp~~m~V~-----~isFaAhvdy~q~s~fi~~i~~~~lilVHGE~ 423 (668)
T KOG1137|consen 350 -SKNAVLIPGYCVEGTLAKDILSEPKEIMAMNGRKLPLRMQVE-----YISFAAHVDYLQNSEFIADITPPHLILVHGEA 423 (668)
T ss_pred -CCCcEEeccceechhHHHHHhcCchhhhcccCCcccccceEE-----EEEeeechhhhhhHHHHHHhCCCeEEEEeccc
Confidence 678899999888886432 11111 11122334454 68899999999999999999999999999998
Q ss_pred HHHHHHHHHHH
Q 045468 203 LFLKEHELLGR 213 (221)
Q Consensus 203 ~~~~~~~~~~~ 213 (221)
-++..+...+.
T Consensus 424 neM~rLKs~L~ 434 (668)
T KOG1137|consen 424 NEMMRLKSALE 434 (668)
T ss_pred chhHHHHHHHH
Confidence 87777666433
No 9
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=97.55 E-value=5e-06 Score=74.47 Aligned_cols=196 Identities=46% Similarity=0.679 Sum_probs=104.1
Q ss_pred cccCC-CCCCCCCCCHHHHHHHHHH--HHHhcCCc-------EEEEeccccHHHHHHHHHHHHHcCCeEEEE-c-----c
Q 045468 3 SDSTN-VLSPGRTTSESVVKDALMR--HVSAAKGR-------VITTQFASNIHRLGSVKAAADLTGRKLVFV-G-----M 66 (221)
Q Consensus 3 ~EsT~-~~~~~~~~sE~~v~~~i~~--~~~~~~g~-------viv~~~a~ni~Rl~~i~~~a~~~gR~~vi~-~-----~ 66 (221)
+|++| +--+|.+..+.-..+.+.+ -+...+|+ |.-..||.|++|+|+.--++.-+++.+++. | .
T Consensus 348 sD~kN~vlipGy~Vegtlak~il~eP~eI~a~~G~klp~~m~V~~isFaAhvdy~q~s~fi~~i~~~~lilVHGE~neM~ 427 (668)
T KOG1137|consen 348 SDSKNAVLIPGYCVEGTLAKDILSEPKEIMAMNGRKLPLRMQVEYISFAAHVDYLQNSEFIADITPPHLILVHGEANEMM 427 (668)
T ss_pred CCCCCcEEeccceechhHHHHHhcCchhhhcccCCcccccceEEEEEeeechhhhhhHHHHHHhCCCeEEEEecccchhH
Confidence 57888 4568888777766666665 44556777 888999999999999888888889988887 7 5
Q ss_pred cHHHHHHHHHHCCCCCCCCCCccChhhhhhc-CCCCEEEEecCCCcc-H-HHHHH--HHhcCCCCCcccCCCCEEEEE-e
Q 045468 67 SLRTYLDAAWKDGKAPIDPSTLVKVEDIDAY-APKDLLIVTTGSQAE-P-RAALN--LASYGGSHSLKLTNEDVILYS-A 140 (221)
Q Consensus 67 ~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~-~~~~~vi~~~g~~~e-~-~~~l~--~~~~~~~~~~~~~~~~~vI~s-~ 140 (221)
++..++....+.|..+.........+++.-+ ++++ +..++|.+.+ | ....+ -..++....+ +.+.|..+|| .
T Consensus 428 rLKs~L~~~f~d~kv~i~v~tprn~e~v~l~f~~ek-lak~~G~~a~~p~~~~~sgiLv~~~~~~~i-ls~edL~~ys~l 505 (668)
T KOG1137|consen 428 RLKSALEAAFRDGKVPIDVSTPRNCEDVELYFPGEK-LAKTTGSLAEVPKEDRVSGILVSYGFSYAI-LSPEDLILYSDL 505 (668)
T ss_pred HHHHHHHHHhccCCCcceecCCccceEeeeecCcch-hhhhhhccccCCccceEEEEEEecCCceee-ccHHHhhhhhhh
Confidence 5556666655555433321111112222211 2222 3444444333 1 00000 0012222222 4456677777 4
Q ss_pred cCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeec-CCCHHHHHHHHHHcCCCEEEEcCCChH
Q 045468 141 KVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSG-HGYRGELEEVLKLVKPQHFLPIHGELL 203 (221)
Q Consensus 141 ~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SG-HA~~~dL~~~i~~i~Pk~iiPVHge~~ 203 (221)
..++++|....++.+.+...+..+.....+..|.|+ ||++-.+. +..++|... |||+|-.
T Consensus 506 ~~~~~~erq~i~~~~~~~li~~~l~~~~~e~~e~s~~~a~~v~~v--i~v~~~q~~-~ivlEw~ 566 (668)
T KOG1137|consen 506 KTIPLNERQVIPYMGRIALIGPNLIQGKNEMLETSKKHAYRVELV--IKVVKPQEF-PIVLEWL 566 (668)
T ss_pred eeeeccceEEEeccccHHhhhhHHHhcchhhhhcccCcceEEEeE--EEEeccCCc-eEEEEec
Confidence 456677653333333333322222211223577777 88765432 223344332 6666533
No 10
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=96.13 E-value=0.026 Score=50.82 Aligned_cols=37 Identities=30% Similarity=0.318 Sum_probs=32.2
Q ss_pred eeeeecCCCHHHHHHHHHHcCCCEEEEcCCChHHHHH
Q 045468 171 GLHTSGHGYRGELEEVLKLVKPQHFLPIHGELLFLKE 207 (221)
Q Consensus 171 ~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~~~~~~ 207 (221)
.++-|=|.+..+|.++++.++|+.+||.=++..++..
T Consensus 381 ~vpYseHSs~~el~~f~~~lk~k~iiptv~~~~~~~~ 417 (481)
T KOG1361|consen 381 LVPYSEHSSYTELSEFLSKLKPKTIIPTVNEDTELSD 417 (481)
T ss_pred cccccccCCHHHHHHHHHhcCCCeeecCccCCccccc
Confidence 5667899999999999999999999999998874443
No 11
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=93.98 E-value=0.093 Score=37.91 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=26.1
Q ss_pred eeeeecCCCHHHHHHHHHHcCCCEEEEc
Q 045468 171 GLHTSGHGYRGELEEVLKLVKPQHFLPI 198 (221)
Q Consensus 171 ~~h~SGHA~~~dL~~~i~~i~Pk~iiPV 198 (221)
.+=.|=|++..||+++++.++|+.+||.
T Consensus 78 ~VPYSeHSSf~EL~~Fv~~l~P~~IiPt 105 (110)
T PF07522_consen 78 RVPYSEHSSFSELKEFVSFLKPKKIIPT 105 (110)
T ss_pred EEecccCCCHHHHHHHHHhcCCcEEEcc
Confidence 5667999999999999999999999996
No 12
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=91.60 E-value=0.38 Score=36.85 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=21.1
Q ss_pred eeeeecC--CCHHHHHHHHHHcCCCEEEEcC
Q 045468 171 GLHTSGH--GYRGELEEVLKLVKPQHFLPIH 199 (221)
Q Consensus 171 ~~h~SGH--A~~~dL~~~i~~i~Pk~iiPVH 199 (221)
.+-++|. .+.++..++++.++||.+||+|
T Consensus 133 ~~p~~g~~~~~~~~a~~~~~~l~pk~viP~H 163 (163)
T PF13483_consen 133 FLPVGGPFTMGPEEAAELAERLKPKLVIPMH 163 (163)
T ss_dssp EEE--TTTS--HHHHHHHHHHCT-SEEEEES
T ss_pred EecCCCCcccCHHHHHHHHHHcCCCEEEeCC
Confidence 4555663 5899999999999999999999
No 13
>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains []. ; PDB: 2YCB_B 2XR1_B 2I7T_A 2I7V_A 2I7X_A 3A4Y_A 3IE2_D 3IE1_B 3IE0_D 2DKF_D ....
Probab=91.51 E-value=0.37 Score=35.19 Aligned_cols=48 Identities=17% Similarity=0.360 Sum_probs=30.7
Q ss_pred hhhhcCCCCEEEEecCC--CccHHHHHHHHhcCCCCCcccCCCCEEEEEecCCCCcHH
Q 045468 93 DIDAYAPKDLLIVTTGS--QAEPRAALNLASYGGSHSLKLTNEDVILYSAKVIPGNES 148 (221)
Q Consensus 93 ~~~~~~~~~~vi~~~g~--~~e~~~~l~~~~~~~~~~~~~~~~~~vI~s~~~~pg~e~ 148 (221)
++...+.+.+++..+|+ .|....+|.+++.+ ++++|||.+++.||+-.
T Consensus 74 ~l~~~~~p~Vvias~gml~~G~s~~~l~~~~~d--------~~n~Ii~~gy~~~~T~g 123 (126)
T PF10996_consen 74 ELNALSGPKVVIASSGMLEGGRSRHYLKRLASD--------PRNTIIFTGYQAPGTLG 123 (126)
T ss_dssp HHHHSCSSEEEEESSTTSSSSHHHHHHHHHTTS--------TTSEEEESSS--TTSHH
T ss_pred ccccCCCCeEEEeCCCCCCCCHHHHHHHHHcCC--------CCCeEEEecCCCCCCcc
Confidence 34434544444444455 35557778888875 88999999999998754
No 14
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=91.05 E-value=1.7 Score=38.11 Aligned_cols=79 Identities=15% Similarity=0.218 Sum_probs=53.9
Q ss_pred cCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHH---cCCCEEEEcC--CChHH
Q 045468 130 LTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKL---VKPQHFLPIH--GELLF 204 (221)
Q Consensus 130 ~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~---i~Pk~iiPVH--ge~~~ 204 (221)
+++||.||.+.+..+++ .+.+...|++++....+ ...+.-+.++|...++. -+++.++|+| |...+
T Consensus 66 ~~~Gd~Viv~~~~~~~~-------~~~~~~~G~~~~~~~~~--~~~~~~d~~~l~~~i~~~~~~~t~~v~~~~~~G~~~~ 136 (380)
T TIGR03588 66 VGPGDRVWTTPITFVAT-------ANCALYCGAKVDFVDID--PDTGNIDEDALEKKLAAAKGKLPKAIVPVDFAGKSVD 136 (380)
T ss_pred CCCCCEEEeCCcchHHH-------HHHHHHcCCEEEEEecC--CCcCCcCHHHHHHHhhcccCCCceEEEEeCCCCccCC
Confidence 45899988887644332 24456779887632110 12467888999888874 3578999998 44456
Q ss_pred HHHHHHHHHhcCC
Q 045468 205 LKEHELLGRSTGI 217 (221)
Q Consensus 205 ~~~~~~~~~~~g~ 217 (221)
+.+.++++++.|+
T Consensus 137 ~~~i~~l~~~~~~ 149 (380)
T TIGR03588 137 MQAIAALAKKHGL 149 (380)
T ss_pred HHHHHHHHHHcCC
Confidence 7888889988885
No 15
>PRK00685 metal-dependent hydrolase; Provisional
Probab=90.15 E-value=0.97 Score=36.46 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=24.8
Q ss_pred ecCCCHHHHHHHHHHcCCCEEEEcCCC
Q 045468 175 SGHGYRGELEEVLKLVKPQHFLPIHGE 201 (221)
Q Consensus 175 SGHA~~~dL~~~i~~i~Pk~iiPVHge 201 (221)
+.|-+.+|..++++.++||.+||+|-.
T Consensus 168 ~~h~~~~ea~~~~~~~~~k~~v~~H~~ 194 (228)
T PRK00685 168 NFTMGPEDAALAVELIKPKIVIPMHYN 194 (228)
T ss_pred ccccCHHHHHHHHHhhCCCEEEEeccC
Confidence 568999999999999999999999964
No 16
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=89.36 E-value=3.1 Score=36.48 Aligned_cols=78 Identities=13% Similarity=0.131 Sum_probs=53.0
Q ss_pred cCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCC--ChHHHHH
Q 045468 130 LTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHG--ELLFLKE 207 (221)
Q Consensus 130 ~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHg--e~~~~~~ 207 (221)
+++||.||...+..+++ .+.+...|++++....+ ....+.+.++|.+.+.. +++.++|+|- ...++.+
T Consensus 68 ~~~Gd~Viv~~~t~~~~-------~~~~~~~G~~~v~~d~d--~~~~~~d~~~le~~i~~-~tk~i~~~~~~G~~~~~~~ 137 (375)
T PRK11706 68 IQPGDEVIMPSYTFVST-------ANAFVLRGAKIVFVDIR--PDTMNIDETLIEAAITP-KTRAIVPVHYAGVACEMDT 137 (375)
T ss_pred CCCCCEEEECCCCcHHH-------HHHHHHcCCEEEEEecC--CCcCCcCHHHHHHhcCC-CCeEEEEeCCCCCccCHHH
Confidence 35899999888754433 23445678887732211 12357788888887754 7889999985 3456778
Q ss_pred HHHHHHhcCC
Q 045468 208 HELLGRSTGI 217 (221)
Q Consensus 208 ~~~~~~~~g~ 217 (221)
..+++++.|+
T Consensus 138 i~~la~~~~i 147 (375)
T PRK11706 138 IMALAKKHNL 147 (375)
T ss_pred HHHHHHHcCC
Confidence 8888888875
No 17
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=88.33 E-value=0.45 Score=37.10 Aligned_cols=58 Identities=19% Similarity=0.206 Sum_probs=40.4
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEE--ecCCc------eeeeecCCCHHHHHHHHHHcCCCEEEEcC
Q 045468 132 NEDVILYSAKVIPGNESRVMKMLNRISEIGSTIV--MGRNE------GLHTSGHGYRGELEEVLKLVKPQHFLPIH 199 (221)
Q Consensus 132 ~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~--~~~~~------~~h~SGHA~~~dL~~~i~~i~Pk~iiPVH 199 (221)
++..++|++-..+ + .+++ .++++. .+... ....++|...+++.++++.++|+++||+|
T Consensus 128 ~~~~i~~~gD~~~--~------~~~~--~~~D~li~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~il~H 193 (194)
T PF12706_consen 128 DGKKIFYSGDTNY--D------FEEL--KNIDLLILECGYIDEEEEPPARGPGHMTLEEALELAKELKAKKVILIH 193 (194)
T ss_dssp TTEEEEEETSSSS--C------HHHH--TTBSEEEEEBCBSSGGHHCHHCCTTSBBHHHHHHHHHHHTTSEEEEES
T ss_pred CCcceEEeeccch--h------hhhh--ccCCEEEEeCCCcchhhcccccCCCCCCHHHHHHHHHHcCCCEEEEEC
Confidence 4567788876544 1 2444 345444 22211 24459999999999999999999999999
No 18
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=88.03 E-value=1.5 Score=38.47 Aligned_cols=65 Identities=8% Similarity=0.083 Sum_probs=40.2
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCC--ceeeeecCCCHHHHHHHHHHcCCCEEEEcCCC
Q 045468 132 NEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRN--EGLHTSGHGYRGELEEVLKLVKPQHFLPIHGE 201 (221)
Q Consensus 132 ~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~--~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge 201 (221)
++.++.|++-. |+-.... ......++++...+. ......+|-+++|..++++.++|+.+||+|=+
T Consensus 218 ~~~tvy~sGDT--~~~~~~~---~i~~~~~iDvall~iG~~p~~~~~hm~p~ea~~~a~~l~ak~vIpiH~d 284 (355)
T PRK11709 218 PGGNIYHSGDS--HYSNYFA---KHGNDHQIDVALGSYGENPRGITDKMTSIDILRMAESLNAKVVIPVHHD 284 (355)
T ss_pred CCeEEEEeCCC--CccHHHH---HHHhcCCCCEEEecCCCCCCCCcCCCCHHHHHHHHHHcCCCEEEEEChh
Confidence 44566777755 3222222 223334565552211 11123569999999999999999999999974
No 19
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=87.24 E-value=4.6 Score=35.54 Aligned_cols=78 Identities=12% Similarity=0.115 Sum_probs=50.1
Q ss_pred cCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCC--ChHHHHH
Q 045468 130 LTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHG--ELLFLKE 207 (221)
Q Consensus 130 ~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHg--e~~~~~~ 207 (221)
+++||.||.+.+..+++. +.+...|++++....+. -.+--+.+++...+.. +++.++|+|- -..++.+
T Consensus 68 ~~pGd~Viv~~~t~~~~~-------~~~~~~G~~~v~vd~d~--~~~~~d~~~le~~i~~-~tk~Iip~~~~G~~~d~~~ 137 (376)
T TIGR02379 68 IQPGDEVIMPSYTFVSTA-------NAFVLRGAKIVFVDIRP--DTMNIDETLIESAITH-RTKAIVPVHYAGVACDMDT 137 (376)
T ss_pred CCCcCEEEECCCCcHHHH-------HHHHHcCCEEEEEecCC--CcCCCCHHHHHHhcCc-CceEEEEeCCCCCccCHHH
Confidence 458999998876544332 23346688877322111 1134567777776643 6789999995 4446778
Q ss_pred HHHHHHhcCC
Q 045468 208 HELLGRSTGI 217 (221)
Q Consensus 208 ~~~~~~~~g~ 217 (221)
..+++++.|+
T Consensus 138 I~~la~~~~i 147 (376)
T TIGR02379 138 IMALANKHQL 147 (376)
T ss_pred HHHHHHHCCC
Confidence 8888888885
No 20
>PRK00055 ribonuclease Z; Reviewed
Probab=84.68 E-value=3.7 Score=33.78 Aligned_cols=29 Identities=17% Similarity=0.161 Sum_probs=26.8
Q ss_pred eecCCCHHHHHHHHHHcCCCEEEEcCCCh
Q 045468 174 TSGHGYRGELEEVLKLVKPQHFLPIHGEL 202 (221)
Q Consensus 174 ~SGHA~~~dL~~~i~~i~Pk~iiPVHge~ 202 (221)
.+||.+.++..++++.++|+.++++|-..
T Consensus 207 ~~~H~~~~~a~~~~~~~~~~~~vl~H~~~ 235 (270)
T PRK00055 207 EYGHSTARQAAEIAKEAGVKRLILTHFSP 235 (270)
T ss_pred hcCCCCHHHHHHHHHHcCCCEEEEEeecc
Confidence 57999999999999999999999999754
No 21
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=84.27 E-value=5.4 Score=34.75 Aligned_cols=78 Identities=18% Similarity=0.172 Sum_probs=52.3
Q ss_pred ccCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceee-eecCCCHHHHHHHHHHcCCCEEEEcCC--ChHHH
Q 045468 129 KLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLH-TSGHGYRGELEEVLKLVKPQHFLPIHG--ELLFL 205 (221)
Q Consensus 129 ~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h-~SGHA~~~dL~~~i~~i~Pk~iiPVHg--e~~~~ 205 (221)
.+++||.||.+++..+. ..+-+...|++++... +. .++.-+++++++.+..- .+.++++|- -..++
T Consensus 61 ~~~~gdeVi~p~~t~~~-------~~~ai~~~G~~pv~~D---i~~~~~~id~~~~~~~i~~~-t~ai~~~h~~G~~~d~ 129 (363)
T PF01041_consen 61 GLGPGDEVIVPAYTFPA-------TASAILWAGAEPVFVD---IDPETLNIDPEALEKAITPK-TKAILVVHLFGNPADM 129 (363)
T ss_dssp TGGTTSEEEEESSS-TH-------HHHHHHHTT-EEEEE----BETTTSSB-HHHHHHHHHTT-EEEEEEE-GGGB---H
T ss_pred CCCcCceEecCCCcchH-------HHHHHHHhccEEEEEe---ccCCcCCcCHHHHHHHhccC-ccEEEEecCCCCcccH
Confidence 46699999999987663 3455677898776322 33 58899999999987633 378888886 56688
Q ss_pred HHHHHHHHhcCC
Q 045468 206 KEHELLGRSTGI 217 (221)
Q Consensus 206 ~~~~~~~~~~g~ 217 (221)
.+..+++++.|+
T Consensus 130 ~~i~~~~~~~~i 141 (363)
T PF01041_consen 130 DAIRAIARKHGI 141 (363)
T ss_dssp HHHHHHHHHTT-
T ss_pred HHHHHHHHHcCC
Confidence 888999999986
No 22
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=83.76 E-value=6.9 Score=34.38 Aligned_cols=78 Identities=18% Similarity=0.193 Sum_probs=49.6
Q ss_pred cCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCC--ChHHHHH
Q 045468 130 LTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHG--ELLFLKE 207 (221)
Q Consensus 130 ~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHg--e~~~~~~ 207 (221)
+++||.||...+..+++. ..+...|++++....+. -.+..+.+++...+.. +++.++|+|- ...++.+
T Consensus 70 ~~~Gd~Viv~~~~~~~~~-------~~~~~~G~~~v~vd~~~--~~~~~d~~~l~~~i~~-~tkav~~~~~~G~~~d~~~ 139 (379)
T PRK11658 70 IGPGDEVITPSLTWVSTL-------NMIVLLGATPVMVDVDR--DTLMVTPEAIEAAITP-RTKAIIPVHYAGAPADLDA 139 (379)
T ss_pred CCCCCEEEECCCcHHHHH-------HHHHHcCCEEEEEecCC--CcCCcCHHHHHHhccc-CCeEEEEeCCCCCcCCHHH
Confidence 358999988876544432 33455798877321110 1234567777776643 5678998884 4446778
Q ss_pred HHHHHHhcCC
Q 045468 208 HELLGRSTGI 217 (221)
Q Consensus 208 ~~~~~~~~g~ 217 (221)
.++++++.|+
T Consensus 140 i~~~a~~~gi 149 (379)
T PRK11658 140 IRAIGERYGI 149 (379)
T ss_pred HHHHHHHcCC
Confidence 8889998885
No 23
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=83.21 E-value=11 Score=34.28 Aligned_cols=96 Identities=20% Similarity=0.215 Sum_probs=64.4
Q ss_pred EEEEecCCCccHHHHHHHHhcCCCCCcccCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHH
Q 045468 102 LLIVTTGSQAEPRAALNLASYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRG 181 (221)
Q Consensus 102 ~vi~~~g~~~e~~~~l~~~~~~~~~~~~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~ 181 (221)
-+++++|+|.-+. .+.++.. ++||+|++-.+ +|-. +.+-+...|++++..+ .+..| -+++
T Consensus 157 ~IiiT~G~q~al~-l~~~~l~--------~pGd~v~vE~P---tY~~----~~~~~~~~g~~~~~vp---~d~~G-~~~e 216 (459)
T COG1167 157 QIVITSGAQQALD-LLLRLLL--------DPGDTVLVEDP---TYPG----ALQALEALGARVIPVP---VDEDG-IDPE 216 (459)
T ss_pred eEEEeCCHHHHHH-HHHHHhC--------CCCCEEEEcCC---CcHH----HHHHHHHcCCcEEecC---CCCCC-CCHH
Confidence 5788888864433 3334333 38999887665 5443 3467788899887332 22223 4788
Q ss_pred HHHHHHHHcCCC--EEEEcCCC-------hHHHHHHHHHHHhcCC
Q 045468 182 ELEEVLKLVKPQ--HFLPIHGE-------LLFLKEHELLGRSTGI 217 (221)
Q Consensus 182 dL~~~i~~i~Pk--~iiPVHge-------~~~~~~~~~~~~~~g~ 217 (221)
+|.+.++.-+|| |++|.|-. .....+..++|++.|+
T Consensus 217 ~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~ 261 (459)
T COG1167 217 ALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDV 261 (459)
T ss_pred HHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCC
Confidence 899988887888 77888864 3467778888888775
No 24
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=82.26 E-value=12 Score=33.02 Aligned_cols=79 Identities=11% Similarity=0.121 Sum_probs=55.2
Q ss_pred cCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCC--ChHHHHH
Q 045468 130 LTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHG--ELLFLKE 207 (221)
Q Consensus 130 ~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHg--e~~~~~~ 207 (221)
+.+||-||.++.... ...|-....|++.+....+. -|+--+++.|+.-|..- +|-|||||- -..++.+
T Consensus 71 ig~GDeVI~ps~Tfv-------ATan~i~~~Ga~PVFvDid~--~T~nid~~~ie~aIt~~-tKAIipVhl~G~~~dm~~ 140 (374)
T COG0399 71 IGPGDEVIVPSFTFV-------ATANAVLLVGAKPVFVDIDP--DTLNIDPDLIEAAITPR-TKAIIPVHLAGQPCDMDA 140 (374)
T ss_pred CCCCCEEEecCCchH-------HHHHHHHHcCCeEEEEecCC--cccCCCHHHHHHHcccC-CeEEEEehhccCCCCHHH
Confidence 569999999887533 34466777888655221111 35667777777666544 799999995 5668899
Q ss_pred HHHHHHhcCCC
Q 045468 208 HELLGRSTGIR 218 (221)
Q Consensus 208 ~~~~~~~~g~~ 218 (221)
..++|++.|+.
T Consensus 141 i~~la~~~~l~ 151 (374)
T COG0399 141 IMALAKRHGLP 151 (374)
T ss_pred HHHHHHHcCCe
Confidence 99999999863
No 25
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=82.03 E-value=13 Score=33.48 Aligned_cols=76 Identities=12% Similarity=0.037 Sum_probs=50.8
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCChH-----HH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGELL-----FL 205 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~~-----~~ 205 (221)
++||.||.+... |-.-...+...+.+.|+++. .+ ....+.+++++.|+. ++|.|++.|--+| ++
T Consensus 98 ~~GD~VI~~~~~---Y~~T~~~~~~~l~~~Gi~v~-----~v--d~~~d~~~l~~~I~~-~Tk~I~~e~pgnP~~~v~Di 166 (432)
T PRK06702 98 SSGDHLLCSSTV---YGGTFNLFGVSLRKLGIDVT-----FF--NPNLTADEIVALAND-KTKLVYAESLGNPAMNVLNF 166 (432)
T ss_pred CCCCEEEECCCc---hHHHHHHHHHHHHHCCCEEE-----EE--CCCCCHHHHHHhCCc-CCeEEEEEcCCCccccccCH
Confidence 589998887753 33222234455788899875 23 334566777666643 5678887765555 68
Q ss_pred HHHHHHHHhcCC
Q 045468 206 KEHELLGRSTGI 217 (221)
Q Consensus 206 ~~~~~~~~~~g~ 217 (221)
.+.+++|++.|+
T Consensus 167 ~~I~~iA~~~gi 178 (432)
T PRK06702 167 KEFSDAAKELEV 178 (432)
T ss_pred HHHHHHHHHcCC
Confidence 999999999986
No 26
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=80.58 E-value=28 Score=29.74 Aligned_cols=79 Identities=14% Similarity=0.085 Sum_probs=50.3
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCC-----ChHHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHG-----ELLFL 205 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHg-----e~~~~ 205 (221)
.+++.++...+..++. .+.......|+++...+ ..-.++.+.++|.+.++.-+|+.++-.|. ....+
T Consensus 72 ~~g~~vl~~~~~~~~~-----~~~~~~~~~g~~~~~v~---~~~~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~~ 143 (356)
T cd06451 72 EPGDKVLVGVNGVFGD-----RWADMAERYGADVDVVE---KPWGEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNPL 143 (356)
T ss_pred CCCCEEEEecCCchhH-----HHHHHHHHhCCCeEEee---cCCCCCCCHHHHHHHHhccCCCEEEEeccCCCcccccCH
Confidence 3788888776433331 12244556787765211 22247889999998887657887776665 33456
Q ss_pred HHHHHHHHhcCC
Q 045468 206 KEHELLGRSTGI 217 (221)
Q Consensus 206 ~~~~~~~~~~g~ 217 (221)
.+.++++++.|+
T Consensus 144 ~~i~~~a~~~~~ 155 (356)
T cd06451 144 EGIGALAKKHDA 155 (356)
T ss_pred HHHHHHHHhcCC
Confidence 777888888774
No 27
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=80.19 E-value=16 Score=31.20 Aligned_cols=77 Identities=14% Similarity=0.198 Sum_probs=48.5
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcC--CChHHHHHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIH--GELLFLKEH 208 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVH--ge~~~~~~~ 208 (221)
.++|.++......+++ ...+...|++++..+.+. ..++.+.++|...++ -+++.++++| |....+.+.
T Consensus 56 ~~gd~vl~~~~~~~~~-------~~~~~~~g~~~~~~~~~~--~~~~~d~~~l~~~i~-~~~~~v~~~~~~G~~~~~~~i 125 (352)
T cd00616 56 GPGDEVIVPSFTFVAT-------ANAILLLGATPVFVDIDP--DTYNIDPELIEAAIT-PRTKAIIPVHLYGNPADMDAI 125 (352)
T ss_pred CCCCEEEeCCcchHHH-------HHHHHHcCCeEEEEecCC--CcCCcCHHHHHHhcC-cCCeEEEEECCCCCcCCHHHH
Confidence 4788877766532222 233455788776322111 156778888877663 2678888887 455567788
Q ss_pred HHHHHhcCC
Q 045468 209 ELLGRSTGI 217 (221)
Q Consensus 209 ~~~~~~~g~ 217 (221)
++++++.|+
T Consensus 126 ~~l~~~~~i 134 (352)
T cd00616 126 MAIAKRHGL 134 (352)
T ss_pred HHHHHHcCC
Confidence 888888875
No 28
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=78.86 E-value=25 Score=31.67 Aligned_cols=78 Identities=19% Similarity=0.132 Sum_probs=49.5
Q ss_pred cCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcC--CChHHHHH
Q 045468 130 LTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIH--GELLFLKE 207 (221)
Q Consensus 130 ~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVH--ge~~~~~~ 207 (221)
+.+||.||......+++. +.+...|+.++....+. ..+.-+.+++...+.. +++.++++| |...++.+
T Consensus 108 ~~pGd~VIv~~~t~~a~~-------~~v~~~G~~pv~vdvd~--~~~~id~~~le~~i~~-~tkaVi~~~~~G~p~dl~~ 177 (438)
T PRK15407 108 LKPGDEVITVAAGFPTTV-------NPIIQNGLVPVFVDVEL--PTYNIDASLLEAAVSP-KTKAIMIAHTLGNPFDLAA 177 (438)
T ss_pred CCCCCEEEECCCCcHHHH-------HHHHHcCCEEEEEecCC--CcCCcCHHHHHHHcCc-CCeEEEEeCCCCChhhHHH
Confidence 468999888876544332 23345688766321111 2355567777766532 567888876 66667888
Q ss_pred HHHHHHhcCC
Q 045468 208 HELLGRSTGI 217 (221)
Q Consensus 208 ~~~~~~~~g~ 217 (221)
..+++++.|+
T Consensus 178 I~~la~~~gi 187 (438)
T PRK15407 178 VKAFCDKHNL 187 (438)
T ss_pred HHHHHHHCCC
Confidence 8899999885
No 29
>PRK04311 selenocysteine synthase; Provisional
Probab=77.51 E-value=6.7 Score=35.73 Aligned_cols=80 Identities=15% Similarity=0.255 Sum_probs=50.6
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCCh--------
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGEL-------- 202 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~-------- 202 (221)
.++|.||.|..+.+.+- ...++.+.+.+.|++++ .+.+.+-.+.+|+...++. +++.++.+|.-+
T Consensus 163 ~~GdeVIvs~~e~~~~g-gs~~i~~~~~~~G~~l~-----~v~~~~~t~~~dle~aI~~-~TklV~~vh~sN~~i~G~~~ 235 (464)
T PRK04311 163 AAGKEVIVSRGELVEIG-GAFRIPDVMRQAGARLV-----EVGTTNRTHLRDYEQAINE-NTALLLKVHTSNYRIEGFTK 235 (464)
T ss_pred CCCCEEEEcchhhhhcC-cchhhHHHHHHCCcEEE-----EECCCCCCCHHHHHHhcCc-cCeEEEEEcCCCccccccCC
Confidence 47888888875433110 11123445677899876 3444444556666655531 457889999754
Q ss_pred -HHHHHHHHHHHhcCC
Q 045468 203 -LFLKEHELLGRSTGI 217 (221)
Q Consensus 203 -~~~~~~~~~~~~~g~ 217 (221)
.++.+.+++|++.|+
T Consensus 236 ~~dl~eI~~lak~~gi 251 (464)
T PRK04311 236 EVSLAELAALGKEHGL 251 (464)
T ss_pred cCCHHHHHHHHHHcCC
Confidence 478889999999886
No 30
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=77.04 E-value=11 Score=33.95 Aligned_cols=74 Identities=14% Similarity=0.185 Sum_probs=47.1
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCC--CEEEEcCCChH-----
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKP--QHFLPIHGELL----- 203 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~P--k~iiPVHge~~----- 203 (221)
++||.||.+.....++. ..+.+.+.+.|+++.. +... .+.++++. .++| +.++..|--++
T Consensus 106 ~~Gd~VI~~~~~y~~t~---~~~~~~l~~~Gi~v~~-----vd~~--~d~e~l~~---~l~~~tk~V~~e~~~Np~~~v~ 172 (437)
T PRK05613 106 GAGDHIVTSPRLYGGTE---TLFLVTLNRLGIEVTF-----VENP--DDPESWQA---AVQPNTKAFFGETFANPQADVL 172 (437)
T ss_pred CCCCEEEECCCccHHHH---HHHHHHHHhcCeEEEE-----ECCC--CCHHHHHH---hCCccCeEEEEECCCCCCCccc
Confidence 48999888876444442 2344667888998862 2211 14455544 5544 56776555444
Q ss_pred HHHHHHHHHHhcCC
Q 045468 204 FLKEHELLGRSTGI 217 (221)
Q Consensus 204 ~~~~~~~~~~~~g~ 217 (221)
++.+.+++|++.|+
T Consensus 173 di~~I~~la~~~gi 186 (437)
T PRK05613 173 DIPAVAEVAHRNQV 186 (437)
T ss_pred CHHHHHHHHHHcCC
Confidence 88999999999985
No 31
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=76.84 E-value=14 Score=30.31 Aligned_cols=66 Identities=9% Similarity=0.128 Sum_probs=41.0
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecC----CceeeeecCCCHHHHHHHHHHcCCCEEEEcCCC
Q 045468 132 NEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGR----NEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGE 201 (221)
Q Consensus 132 ~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~----~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge 201 (221)
++..++|++-..+-.+ .+...+...++++.... ....-.-||.+.++..++++.++|+.+++.|=.
T Consensus 153 ~~~~i~ysgDt~~~~~----~~~~~~~~~~~Dlli~e~~~~~~~~~~~~H~~~~~a~~~a~~~~~k~lvltH~~ 222 (250)
T PRK11244 153 AHSRVAYLTDTVGLPE----DTLKFLRNNQPDLLVLDCSHPPQEDAPRNHNDLTTALAIIEVLRPPRVILTHIS 222 (250)
T ss_pred CCeEEEEEcCCCCCCH----HHHHHHhcCCCCEEEEeCcCCCCCCCCCCCCCHHHHHHHHHhcCCceEEEEccc
Confidence 3447888886532222 12333333455555211 011112479999999999999999999999963
No 32
>PRK05957 aspartate aminotransferase; Provisional
Probab=76.30 E-value=29 Score=30.39 Aligned_cols=76 Identities=14% Similarity=0.159 Sum_probs=46.5
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCC--------h
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGE--------L 202 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge--------~ 202 (221)
++||.|+.+.+..+++.. .+...|++++..+ ..-.+..+.++|+..++. +++.++-.|-- .
T Consensus 111 ~~gd~Vlv~~P~y~~~~~-------~~~~~g~~~~~v~---~~~~~~~d~~~l~~~i~~-~~klv~~~~p~NPtG~~~~~ 179 (389)
T PRK05957 111 DPGDEIILNTPYYFNHEM-------AITMAGCQPILVP---TDDNYQLQPEAIEQAITP-KTRAIVTISPNNPTGVVYPE 179 (389)
T ss_pred CCCCEEEEeCCCCcCHHH-------HHHhcCCEEEEee---cCCCCCcCHHHHHHhcCc-CceEEEEeCCCCCCCcCcCH
Confidence 488998888765544432 3456788876322 112345667777765532 46777766621 2
Q ss_pred HHHHHHHHHHHhcCC
Q 045468 203 LFLKEHELLGRSTGI 217 (221)
Q Consensus 203 ~~~~~~~~~~~~~g~ 217 (221)
.++.+.+++|++.|+
T Consensus 180 ~~~~~i~~~a~~~~~ 194 (389)
T PRK05957 180 ALLRAVNQICAEHGI 194 (389)
T ss_pred HHHHHHHHHHHHcCc
Confidence 357788888988774
No 33
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=75.96 E-value=8.3 Score=31.38 Aligned_cols=68 Identities=6% Similarity=0.044 Sum_probs=42.9
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEe--cCC--ceeeeecCCCHHHHHHHHHHcCCCEEEEcCCChH
Q 045468 132 NEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVM--GRN--EGLHTSGHGYRGELEEVLKLVKPQHFLPIHGELL 203 (221)
Q Consensus 132 ~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~--~~~--~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~~ 203 (221)
++..++|++-..+ ... .+...+...++++.. ... .....-+|.+.++..++++.++|+.+|++|=...
T Consensus 143 ~~~~i~y~gDt~~-~~~---~~~~~~~~~~~D~li~e~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~lil~H~~~~ 214 (238)
T TIGR03307 143 DGQRVAYLTDTAG-LPP---DTEAFLKNHPLDVLILDCSHPPQSDAPRNHNDLTRALAINEQLRPKQVILTHISHQ 214 (238)
T ss_pred CCcEEEEEecCCC-CCH---HHHHHHhcCCCCEEEEeCCcCccccCCCCcCCHHHHHHHHHHcCCCEEEEEecccc
Confidence 4557888886522 122 122334333555441 111 1112358999999999999999999999999754
No 34
>PLN00175 aminotransferase family protein; Provisional
Probab=75.93 E-value=26 Score=31.11 Aligned_cols=77 Identities=16% Similarity=0.039 Sum_probs=45.0
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCCh--------
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGEL-------- 202 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~-------- 202 (221)
++||.|+...+..+++. +.+...|++++..+.. ...+..+.++|+..+.. ++|.++..+-.+
T Consensus 137 ~~gd~Vlv~~P~y~~~~-------~~~~~~g~~~~~v~~~--~~~~~~~~~~l~~~~~~-~~k~i~i~~p~NPtG~~~s~ 206 (413)
T PLN00175 137 NPGDEVILFAPFYDSYE-------ATLSMAGAKIKTVTLR--PPDFAVPEDELKAAFTS-KTRAILINTPHNPTGKMFTR 206 (413)
T ss_pred CCCCEEEEeCCCchhHH-------HHHHHcCCEEEEEECC--cccCCCCHHHHHHhcCc-CceEEEecCCCCCCCcCCCH
Confidence 48999888875444332 3345578877621110 01245667777766543 456666444333
Q ss_pred HHHHHHHHHHHhcCC
Q 045468 203 LFLKEHELLGRSTGI 217 (221)
Q Consensus 203 ~~~~~~~~~~~~~g~ 217 (221)
.++.+.+++|++.|+
T Consensus 207 ~~l~~l~~~a~~~~~ 221 (413)
T PLN00175 207 EELELIASLCKENDV 221 (413)
T ss_pred HHHHHHHHHHHHcCc
Confidence 367778888888774
No 35
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=75.13 E-value=8.3 Score=33.17 Aligned_cols=79 Identities=23% Similarity=0.346 Sum_probs=56.2
Q ss_pred cCCCCEEEEEecCCCCcH-HHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCChH-----
Q 045468 130 LTNEDVILYSAKVIPGNE-SRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGELL----- 203 (221)
Q Consensus 130 ~~~~~~vI~s~~~~pg~e-~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~~----- 203 (221)
+++.|.+++|++..||.. ..+.++.+.+.+.|+.++ +.+||-| |...++.- |-.+-|=|=|-.
T Consensus 127 l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vi------lD~Sg~~----L~~~L~~~-P~lIKPN~~EL~~~~g~ 195 (310)
T COG1105 127 LESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVI------LDTSGEA----LLAALEAK-PWLIKPNREELEALFGR 195 (310)
T ss_pred cccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEE------EECChHH----HHHHHccC-CcEEecCHHHHHHHhCC
Confidence 457899999999877864 458889999999999996 7778754 44444333 888888765432
Q ss_pred ------HHHHHHHHHHhcCCCC
Q 045468 204 ------FLKEHELLGRSTGIRH 219 (221)
Q Consensus 204 ------~~~~~~~~~~~~g~~~ 219 (221)
+....++..++.|+..
T Consensus 196 ~~~~~~d~i~~a~~l~~~g~~~ 217 (310)
T COG1105 196 ELTTLEDVIKAARELLAEGIEN 217 (310)
T ss_pred CCCChHHHHHHHHHHHHCCCCE
Confidence 5555566566677654
No 36
>PRK08175 aminotransferase; Validated
Probab=74.62 E-value=37 Score=29.76 Aligned_cols=95 Identities=23% Similarity=0.258 Sum_probs=55.9
Q ss_pred EEEecCCCccHHHHHHHHhcCCCCCcccCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHH
Q 045468 103 LIVTTGSQAEPRAALNLASYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGE 182 (221)
Q Consensus 103 vi~~~g~~~e~~~~l~~~~~~~~~~~~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~d 182 (221)
+++++|.+.-+. .+..... ++||.|++..+..+++... +...|++++..+. . -++-..++
T Consensus 94 i~~t~G~~~~l~-~~~~~~~--------~~gd~Vlv~~P~y~~~~~~-------~~~~g~~~~~v~~---~-~~~~~~~~ 153 (395)
T PRK08175 94 AIVTIGSKEGLA-HLMLATL--------DHGDTVLVPNPSYPIHIYG-------AVIAGAQVRSVPL---V-EGVDFFNE 153 (395)
T ss_pred EEEccCcHHHHH-HHHHHhC--------CCCCEEEEcCCCCcchHHH-------HHHcCCeEEEEec---c-cCCCcHHH
Confidence 667777643332 2322222 4899999988766654332 2246777652111 1 13335788
Q ss_pred HHHHHHHc--CCCEEEEcC-----C---ChHHHHHHHHHHHhcCC
Q 045468 183 LEEVLKLV--KPQHFLPIH-----G---ELLFLKEHELLGRSTGI 217 (221)
Q Consensus 183 L~~~i~~i--~Pk~iiPVH-----g---e~~~~~~~~~~~~~~g~ 217 (221)
|.+.++.. +++.++..+ | ...++.+.+++|++.|+
T Consensus 154 l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i 198 (395)
T PRK08175 154 LERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDV 198 (395)
T ss_pred HHHHHhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCc
Confidence 88888764 567777553 2 34466788888888774
No 37
>PRK07550 hypothetical protein; Provisional
Probab=74.55 E-value=42 Score=29.23 Aligned_cols=78 Identities=13% Similarity=0.056 Sum_probs=47.8
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCChH-------
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGELL------- 203 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~~------- 203 (221)
++||.|+...+..+++. +.+...|++++..+.+. ...+-.+.++|.+.++. +++.++-++--+|
T Consensus 112 ~~gd~Vlv~~p~y~~~~-------~~~~~~g~~~~~v~~~~-~~~~~~~~~~l~~~~~~-~~~~v~~~~P~NPtG~~~~~ 182 (386)
T PRK07550 112 GAGDEVILPLPWYFNHK-------MWLDMLGIRPVYLPCDE-GPGLLPDPAAAEALITP-RTRAIALVTPNNPTGVVYPP 182 (386)
T ss_pred CCCCEEEEcCCCCcchH-------HHHHhcCCEEEEEecCC-CcCCCCCHHHHHHHhcc-cCcEEEEeCCCCCCCcccCH
Confidence 38999888876554442 23456888876221110 11233467788877764 6777777764332
Q ss_pred -HHHHHHHHHHhcCC
Q 045468 204 -FLKEHELLGRSTGI 217 (221)
Q Consensus 204 -~~~~~~~~~~~~g~ 217 (221)
++.+.++++++.|+
T Consensus 183 ~~~~~i~~~~~~~~~ 197 (386)
T PRK07550 183 ELLHELYDLARRHGI 197 (386)
T ss_pred HHHHHHHHHHHHcCe
Confidence 57778888887774
No 38
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=74.50 E-value=17 Score=29.70 Aligned_cols=51 Identities=10% Similarity=0.106 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHHHHcCCeEEEEcc
Q 045468 16 SESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGM 66 (221)
Q Consensus 16 sE~~v~~~i~~~~~~~~g~viv~~~a~ni~Rl~~i~~~a~~~gR~~vi~~~ 66 (221)
+...+.+.+++++++++..|++.+....+.++..-+..|.+.|-++.+...
T Consensus 7 g~~~I~~~i~elI~~Ae~eI~is~~~~~l~~l~~~L~~a~~rGV~V~li~~ 57 (233)
T PF11495_consen 7 GRETILERIRELIENAESEIYISIPPEFLEELRDELEEAVDRGVKVKLIVF 57 (233)
T ss_dssp SHHHHHHHHHHHHHC-SSEEEEEE-GGGHHHHHHHHHHHHHTT-EEEEEES
T ss_pred CHHHHHHHHHHHHHHhheEEEEEcCHHHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 567899999999999999999999999999999999999999987776533
No 39
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=74.07 E-value=29 Score=31.06 Aligned_cols=97 Identities=14% Similarity=0.030 Sum_probs=55.9
Q ss_pred EEEecCCCccHHHHHHHHhcCCCCCcccCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHH
Q 045468 103 LIVTTGSQAEPRAALNLASYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGE 182 (221)
Q Consensus 103 vi~~~g~~~e~~~~l~~~~~~~~~~~~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~d 182 (221)
++++.|.+.-+...+..+ . ++||.|++..+..+.++.. ....|+++....... .....-+.++
T Consensus 120 v~it~G~~~al~l~~~~l-~--------~~Gd~Vlv~~P~y~~y~~~-------~~~~g~~~~~~~~~~-~~~~~~d~~~ 182 (430)
T PLN00145 120 IYLTAGCAQAIEIIMSVL-A--------QPGANILLPRPGYPLYEAR-------AVFSGLEVRHFDLLP-ERGWEVDLEG 182 (430)
T ss_pred EEEeCCHHHHHHHHHHHh-c--------CCCCEEEEcCCCCccHHHH-------HHHcCCEEEEeeCCc-ccCCcCCHHH
Confidence 566767644333333322 1 3889999888766665442 222456554111000 1123456677
Q ss_pred HHHHHHHcCCCEEEEcCCChH--------HHHHHHHHHHhcCC
Q 045468 183 LEEVLKLVKPQHFLPIHGELL--------FLKEHELLGRSTGI 217 (221)
Q Consensus 183 L~~~i~~i~Pk~iiPVHge~~--------~~~~~~~~~~~~g~ 217 (221)
|+.+++. +++.++.+|--+| ++.+.+++|++.|+
T Consensus 183 l~~~~~~-~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i 224 (430)
T PLN00145 183 VEALADE-NTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGI 224 (430)
T ss_pred HHHHhCc-CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 7665532 5678888886665 68888888988885
No 40
>PTZ00377 alanine aminotransferase; Provisional
Probab=73.46 E-value=34 Score=31.09 Aligned_cols=99 Identities=18% Similarity=0.164 Sum_probs=57.2
Q ss_pred EEEecCCCccHHHHHHHHhcCCCCCcccCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHH
Q 045468 103 LIVTTGSQAEPRAALNLASYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGE 182 (221)
Q Consensus 103 vi~~~g~~~e~~~~l~~~~~~~~~~~~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~d 182 (221)
|++++|.+.-+.. +.+.... ++||.|++..+..|++... +...|++++..+... .....-+.++
T Consensus 141 I~it~Ga~~al~~-~~~~l~~-------~~gD~Vlv~~P~y~~y~~~-------~~~~g~~~v~v~~~~-~~~~~~d~~~ 204 (481)
T PTZ00377 141 IFLTDGASSGIKL-LLQLLIG-------DPSDGVMIPIPQYPLYSAA-------ITLLGGKQVPYYLDE-EKGWSLDQEE 204 (481)
T ss_pred EEEcCCHHHHHHH-HHHHhcc-------CCCCEEEECCCCchhHHHH-------HHHcCCEEEEEEecc-ccCCCCCHHH
Confidence 6677776433333 3222221 3789998888766665432 344677766211000 0112467788
Q ss_pred HHHHHHHc-----CCCEEEEcCCCh--------HHHHHHHHHHHhcCC
Q 045468 183 LEEVLKLV-----KPQHFLPIHGEL--------LFLKEHELLGRSTGI 217 (221)
Q Consensus 183 L~~~i~~i-----~Pk~iiPVHge~--------~~~~~~~~~~~~~g~ 217 (221)
|...+... ++|.++-++=-+ .++.+.+++|++.|+
T Consensus 205 l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~ 252 (481)
T PTZ00377 205 LEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGI 252 (481)
T ss_pred HHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCC
Confidence 88887653 678766665433 367888888887764
No 41
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=73.06 E-value=29 Score=26.87 Aligned_cols=52 Identities=8% Similarity=0.052 Sum_probs=40.6
Q ss_pred HHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHH
Q 045468 154 LNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGELLFLKEHELLGR 213 (221)
Q Consensus 154 ~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~~~~~~~~~~~~ 213 (221)
.+.+.+.|+.++ -+.. |.++.++|+.+.. +|.+++.+...+..+....+.+.
T Consensus 127 a~~l~~~gv~i~-----~vgv-~~~~~~~L~~iA~--~~~~~f~~~~~~~~l~~~~~~~~ 178 (185)
T cd01474 127 AKLSRKLGAIVY-----CVGV-TDFLKSQLINIAD--SKEYVFPVTSGFQALSGIIESVV 178 (185)
T ss_pred HHHHHHcCCEEE-----EEee-chhhHHHHHHHhC--CCCeeEecCccHHHHHHHHHHHH
Confidence 356777899887 5666 6678888888887 68999989988888887777554
No 42
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=72.74 E-value=36 Score=30.63 Aligned_cols=75 Identities=7% Similarity=0.044 Sum_probs=47.5
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCChH-----HH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGELL-----FL 205 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~~-----~~ 205 (221)
++||.||.+....+++-. .+...+.+.|+++. .+... +.++++..++. +++.|+..|=-++ ++
T Consensus 101 ~~Gd~Vi~~~~~y~~t~~---~~~~~l~~~Gi~v~-----~vd~~---d~~~l~~~i~~-~TklV~~e~~~np~g~v~Di 168 (433)
T PRK08134 101 GAGSHIVASSALYGGSHN---LLHYTLRRFGIETT-----FVKPG---DIDGWRAAIRP-NTRLLFGETLGNPGLEVLDI 168 (433)
T ss_pred CCCCEEEEeCCccHHHHH---HHHHHHhhCCeEEE-----EECCC---CHHHHHHhcCC-CCeEEEEECCCcccCcccCH
Confidence 478988888775444322 12234567898876 33321 45555554432 4567887776664 78
Q ss_pred HHHHHHHHhcCC
Q 045468 206 KEHELLGRSTGI 217 (221)
Q Consensus 206 ~~~~~~~~~~g~ 217 (221)
.+.+++|++.|+
T Consensus 169 ~~I~~la~~~gi 180 (433)
T PRK08134 169 PTVAAIAHEAGV 180 (433)
T ss_pred HHHHHHHHHcCC
Confidence 889999999985
No 43
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=72.28 E-value=49 Score=27.75 Aligned_cols=80 Identities=15% Similarity=0.084 Sum_probs=52.5
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecC---CceeeeecCCCHHHHHHHHHH-cCCCEEEEcC----CCh
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGR---NEGLHTSGHGYRGELEEVLKL-VKPQHFLPIH----GEL 202 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~---~~~~h~SGHA~~~dL~~~i~~-i~Pk~iiPVH----ge~ 202 (221)
+++|.|+.... .+ ..+.+.+...|++++... +......|+-+.+++++.++. -+|+.++..+ |.-
T Consensus 97 ~~gd~Vlv~~~---~h----~s~~~~~~~~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p~~~G~~ 169 (294)
T cd00615 97 GPGDKILIDRN---CH----KSVINGLVLSGAVPVYLKPERNPYYGIAGGIPPETFKKALIEHPDAKAAVITNPTYYGIC 169 (294)
T ss_pred CCCCEEEEeCC---ch----HHHHHHHHHCCCEEEEecCccCcccCcCCCCCHHHHHHHHHhCCCceEEEEECCCCCCEe
Confidence 47888887754 22 233455566787665321 122344678999999998876 3677777665 333
Q ss_pred HHHHHHHHHHHhcCC
Q 045468 203 LFLKEHELLGRSTGI 217 (221)
Q Consensus 203 ~~~~~~~~~~~~~g~ 217 (221)
.++.+.++++++.|+
T Consensus 170 ~dl~~I~~~~~~~g~ 184 (294)
T cd00615 170 YNLRKIVEEAHHRGL 184 (294)
T ss_pred cCHHHHHHHHHhcCC
Confidence 477888889988875
No 44
>PRK08912 hypothetical protein; Provisional
Probab=72.13 E-value=41 Score=29.34 Aligned_cols=97 Identities=15% Similarity=0.034 Sum_probs=53.9
Q ss_pred EEEEecCCCccHHHHHHHHhcCCCCCcccCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHH
Q 045468 102 LLIVTTGSQAEPRAALNLASYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRG 181 (221)
Q Consensus 102 ~vi~~~g~~~e~~~~l~~~~~~~~~~~~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~ 181 (221)
-+++++|.+.-....+..+ ++++|.|++..+..+++. ..+...|++++..+.+ +..+.-+.+
T Consensus 89 ~i~~t~G~~~al~~~~~~~---------~~~gd~Vlv~~p~y~~~~-------~~~~~~g~~~~~~~~~--~~~~~~~~~ 150 (387)
T PRK08912 89 EVMVTSGATEALAAALLAL---------VEPGDEVVLFQPLYDAYL-------PLIRRAGGVPRLVRLE--PPHWRLPRA 150 (387)
T ss_pred cEEEeCCcHHHHHHHHHHh---------cCCCCEEEEeCCCchhhH-------HHHHHcCCEEEEEecC--cccCcCCHH
Confidence 3667777654333333221 247899888886555433 3456678877621110 112345566
Q ss_pred HHHHHHHHcCCCEEEEcCCC--------hHHHHHHHHHHHhcCC
Q 045468 182 ELEEVLKLVKPQHFLPIHGE--------LLFLKEHELLGRSTGI 217 (221)
Q Consensus 182 dL~~~i~~i~Pk~iiPVHge--------~~~~~~~~~~~~~~g~ 217 (221)
+|...+.. +++.++-.|-- ..++.+..+++++.|+
T Consensus 151 ~l~~~~~~-~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~ 193 (387)
T PRK08912 151 ALAAAFSP-RTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDA 193 (387)
T ss_pred HHHHHhCc-cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCe
Confidence 66665532 55666655522 2367777888887763
No 45
>PLN02231 alanine transaminase
Probab=72.05 E-value=41 Score=31.24 Aligned_cols=97 Identities=18% Similarity=0.146 Sum_probs=57.1
Q ss_pred EEEecCCCccHHHHHHHHhcCCCCCcccCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeee--cCCCH
Q 045468 103 LIVTTGSQAEPRAALNLASYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTS--GHGYR 180 (221)
Q Consensus 103 vi~~~g~~~e~~~~l~~~~~~~~~~~~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~S--GHA~~ 180 (221)
++++.|.+.-....+.-+.. .++|.|++-.+..|++.. .+...|++++... +... -..+.
T Consensus 194 I~iT~Ga~~ai~~~~~~l~~--------~~gd~Vli~~P~Y~~y~~-------~~~~~g~~~v~~~---l~~~~~~~~d~ 255 (534)
T PLN02231 194 IFLTDGASPAVHMMMQLLIR--------SEKDGILCPIPQYPLYSA-------SIALHGGTLVPYY---LDEATGWGLEI 255 (534)
T ss_pred EEEeCCHHHHHHHHHHHhcc--------CCCCEEEEeCCCChhHHH-------HHHHcCCEEEEEe---cCcccCCCCCH
Confidence 66777764433333332221 268888888776665543 2445677766211 1111 24678
Q ss_pred HHHHHHHHHc-----CCCEEEEcCC--------ChHHHHHHHHHHHhcCC
Q 045468 181 GELEEVLKLV-----KPQHFLPIHG--------ELLFLKEHELLGRSTGI 217 (221)
Q Consensus 181 ~dL~~~i~~i-----~Pk~iiPVHg--------e~~~~~~~~~~~~~~g~ 217 (221)
++|+..++.. +||.++-+.- ...++.+.+++|++.|+
T Consensus 256 ~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l 305 (534)
T PLN02231 256 SELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGL 305 (534)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCC
Confidence 8898888763 5775554442 23478888888888774
No 46
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=71.72 E-value=69 Score=28.03 Aligned_cols=99 Identities=11% Similarity=0.022 Sum_probs=57.7
Q ss_pred EEEecCCCccHHHHHHHHhcCCCCCcccCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeee-ecCCCHH
Q 045468 103 LIVTTGSQAEPRAALNLASYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHT-SGHGYRG 181 (221)
Q Consensus 103 vi~~~g~~~e~~~~l~~~~~~~~~~~~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~-SGHA~~~ 181 (221)
+++++|.+.-+...+.-++. +++||.|++..+..|++... +...|++++..+. ... -.--+.+
T Consensus 97 v~iT~Ga~~al~~~~~~l~~-------~~pGd~Vlv~~P~y~~~~~~-------~~~~g~~~v~v~~--~~~~~~~~d~~ 160 (396)
T PRK09257 97 TVQTPGGTGALRVGADFLKR-------AFPDAKVWVSDPTWPNHRAI-------FEAAGLEVKTYPY--YDAATKGLDFD 160 (396)
T ss_pred EEecCCccHHHHHHHHHHHH-------hCCCCeEEECCCCcccHHHH-------HHHcCCcEEEEec--cccccCccCHH
Confidence 47777876655444432321 24899999998877776543 3446887762111 000 1234677
Q ss_pred HHHHHHHHcCCC-EEE--EcCC-------ChHHHHHHHHHHHhcCC
Q 045468 182 ELEEVLKLVKPQ-HFL--PIHG-------ELLFLKEHELLGRSTGI 217 (221)
Q Consensus 182 dL~~~i~~i~Pk-~ii--PVHg-------e~~~~~~~~~~~~~~g~ 217 (221)
+|...+...+|+ .++ |-+- ...++.+.+++|++.|+
T Consensus 161 ~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~ 206 (396)
T PRK09257 161 AMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGL 206 (396)
T ss_pred HHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCc
Confidence 777777666664 333 4322 34577788888887774
No 47
>PRK08636 aspartate aminotransferase; Provisional
Probab=71.39 E-value=27 Score=30.79 Aligned_cols=99 Identities=15% Similarity=0.113 Sum_probs=56.6
Q ss_pred EEEEecCCCccHHHHHHHHhcCCCCCcccCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHH
Q 045468 102 LLIVTTGSQAEPRAALNLASYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRG 181 (221)
Q Consensus 102 ~vi~~~g~~~e~~~~l~~~~~~~~~~~~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~ 181 (221)
-+++++|++.-+...+.-+. ++||.|++..+..+++.. .+...|++++..+.+ .....--+.+
T Consensus 97 ~I~it~G~~~al~~~~~~l~---------~~gd~Vlv~~P~y~~~~~-------~~~~~g~~~~~v~~~-~~~~~~~d~~ 159 (403)
T PRK08636 97 EVVATMGSKEGYVHLVQAIT---------NPGDVAIVPDPAYPIHSQ-------AFILAGGNVHKMPLE-YNEDFELDED 159 (403)
T ss_pred eEEECCChHHHHHHHHHHhC---------CCCCEEEEcCCCCcchHH-------HHHhcCCEEEEEecc-ccccCccChh
Confidence 46778887554433333222 389999998876666543 244468877621110 0111123333
Q ss_pred ----HHHHHHHH--cCCCEEEEcCCC--------hHHHHHHHHHHHhcCC
Q 045468 182 ----ELEEVLKL--VKPQHFLPIHGE--------LLFLKEHELLGRSTGI 217 (221)
Q Consensus 182 ----dL~~~i~~--i~Pk~iiPVHge--------~~~~~~~~~~~~~~g~ 217 (221)
.|...++. .++++++|.+-- ..++.+.+++|++.|+
T Consensus 160 ~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~ 209 (403)
T PRK08636 160 QFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERF 209 (403)
T ss_pred hhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCc
Confidence 34555554 356799998622 3477888888888774
No 48
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=71.06 E-value=12 Score=34.05 Aligned_cols=78 Identities=15% Similarity=0.271 Sum_probs=48.2
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCC--CEEEEcCCC-------
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKP--QHFLPIHGE------- 201 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~P--k~iiPVHge------- 201 (221)
.++|.||.|....+.+-. ..++.+.+...|+++. .+.+.+.. ++..+.+.++| +.++.+|.-
T Consensus 158 ~~GdeVIvs~~e~v~~gg-s~~i~~~~~~~G~~~~-----~v~~~~~~---~l~dle~aI~~~T~lv~~~h~sN~~~~G~ 228 (454)
T TIGR00474 158 AKGKEVIVSRGELVEIGG-SFRIPDVMEQSGAKLV-----EVGTTNRT---HLKDYEDAITENTALLLKVHTSNYRIVGF 228 (454)
T ss_pred CCcCEEEECCChhhhhcc-hhhHHHHHHHcCCEEE-----EeCCCCCC---CHHHHHHhcCcCCEEEEEEccCcccccCC
Confidence 478899988754221100 1123355677898876 33333334 44445555655 688889984
Q ss_pred --hHHHHHHHHHHHhcCC
Q 045468 202 --LLFLKEHELLGRSTGI 217 (221)
Q Consensus 202 --~~~~~~~~~~~~~~g~ 217 (221)
..++.+.+++|++.|+
T Consensus 229 ~~~~dl~~I~~la~~~g~ 246 (454)
T TIGR00474 229 TEEVSIAELVALGREHGL 246 (454)
T ss_pred CCCCCHHHHHHHHHHcCC
Confidence 3468889999999886
No 49
>PRK05939 hypothetical protein; Provisional
Probab=71.01 E-value=49 Score=29.37 Aligned_cols=74 Identities=11% Similarity=0.157 Sum_probs=45.9
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcC-----CChHHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIH-----GELLFL 205 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVH-----ge~~~~ 205 (221)
++||.||.+....+++.. +.+.+.+.|+++. .+.. .+.++|+..+.. +++.++-.| |.-.++
T Consensus 84 ~~Gd~Vv~~~~~y~~t~~----~~~~l~~~G~~v~-----~v~~---~d~e~l~~~l~~-~tklV~vesp~NptG~v~dl 150 (397)
T PRK05939 84 RAGDHLVSSQFLFGNTNS----LFGTLRGLGVEVT-----MVDA---TDVQNVAAAIRP-NTRMVFVETIANPGTQVADL 150 (397)
T ss_pred CCCCEEEECCCccccHHH----HHHHHHhcCCEEE-----EECC---CCHHHHHHhCCC-CCeEEEEECCCCCCCCHHhH
Confidence 489998887764444332 2344677898776 2221 255555554421 445555433 456788
Q ss_pred HHHHHHHHhcCC
Q 045468 206 KEHELLGRSTGI 217 (221)
Q Consensus 206 ~~~~~~~~~~g~ 217 (221)
.+.++++++.|+
T Consensus 151 ~~I~~la~~~gi 162 (397)
T PRK05939 151 AGIGALCRERGL 162 (397)
T ss_pred HHHHHHHHHcCC
Confidence 999999999885
No 50
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=70.91 E-value=21 Score=30.96 Aligned_cols=66 Identities=18% Similarity=0.160 Sum_probs=48.6
Q ss_pred cCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCChH
Q 045468 130 LTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGELL 203 (221)
Q Consensus 130 ~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~~ 203 (221)
+.|||.++.......| .+..|-.++.|++|... ....-+|+.-|++.+=++.-+|+.++-.|||..
T Consensus 89 lePgd~vLv~~~G~wg-----~ra~D~~~r~ga~V~~v---~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsS 154 (385)
T KOG2862|consen 89 LEPGDNVLVVSTGTWG-----QRAADCARRYGAEVDVV---EADIGQAVPLEEITEKLSQHKPKAVFVTHGDSS 154 (385)
T ss_pred cCCCCeEEEEEechHH-----HHHHHHHHhhCceeeEE---ecCcccCccHHHHHHHHHhcCCceEEEEecCcc
Confidence 3588877555442222 35567788889877632 344578999999999999999999999999853
No 51
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=70.85 E-value=55 Score=26.49 Aligned_cols=127 Identities=13% Similarity=0.089 Sum_probs=70.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEe-----ccccHHHHHHHHHHHHHcCCeEEEEcccHH--HHHHHHHHCCCCCCCCC
Q 045468 14 TTSESVVKDALMRHVSAAKGRVITTQ-----FASNIHRLGSVKAAADLTGRKLVFVGMSLR--TYLDAAWKDGKAPIDPS 86 (221)
Q Consensus 14 ~~sE~~v~~~i~~~~~~~~g~viv~~-----~a~ni~Rl~~i~~~a~~~gR~~vi~~~~~~--~~~~~~~~~g~~~~~~~ 86 (221)
..+++++.+.+...+.+-++.+-|+- |.+|-.-++.+++.+++.|. ++++++... .....+.+.|......+
T Consensus 70 ~~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T~~~~~m~~vl~~l~~~gl-~FvDS~T~~~s~a~~~A~~~gvp~~~rd 148 (213)
T PF04748_consen 70 GMSEEEIRKRLEAALARVPGAVGVNNHMGSRFTSDREAMRWVLEVLKERGL-FFVDSRTTPRSVAPQVAKELGVPAARRD 148 (213)
T ss_dssp TS-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHHC-HHHHHHHHHHHHHTT--EEEE-S--TT-SHHHHHHHCT--EEE-S
T ss_pred CCCHHHHHHHHHHHHHHCCCcEEEecCCCccccCCHHHHHHHHHHHHHcCC-EEEeCCCCcccHHHHHHHHcCCCEEeec
Confidence 47999999999999988888777766 77899999999999999987 777655431 12345666664321111
Q ss_pred CccChhhhhhcCCCCEEEEecCCCccH---HHHHHHHhcCCCCCcccCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCe
Q 045468 87 TLVKVEDIDAYAPKDLLIVTTGSQAEP---RAALNLASYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGST 163 (221)
Q Consensus 87 ~~v~~~~~~~~~~~~~vi~~~g~~~e~---~~~l~~~~~~~~~~~~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~ 163 (221)
.|++-. -+.... +..+.+++.. .|.. |--+.+.|.+-....+....+.+.|+.
T Consensus 149 vfLD~~---------------~~~~~I~~ql~~~~~~A~~--------~G~a-I~Igh~~p~Tl~~L~~~~~~l~~~gi~ 204 (213)
T PF04748_consen 149 VFLDND---------------QDEAAIRRQLDQAARIARK--------QGSA-IAIGHPRPETLEALEEWLPELEAQGIE 204 (213)
T ss_dssp EETTST----------------SHHHHHHHHHHHHHHHHC--------CSEE-EEEEE-SCCHHHHHHHHHHHHHHCTEE
T ss_pred eecCCC---------------CCHHHHHHHHHHHHHhhhh--------cCcE-EEEEcCCHHHHHHHHHHHhHHhhCCEE
Confidence 222110 011111 2333444442 3444 444555666655555566667778887
Q ss_pred EE
Q 045468 164 IV 165 (221)
Q Consensus 164 v~ 165 (221)
++
T Consensus 205 lV 206 (213)
T PF04748_consen 205 LV 206 (213)
T ss_dssp E-
T ss_pred EE
Confidence 76
No 52
>PRK05942 aspartate aminotransferase; Provisional
Probab=70.37 E-value=47 Score=29.06 Aligned_cols=100 Identities=16% Similarity=0.050 Sum_probs=56.2
Q ss_pred CCEEEEecCCCccHHHHHHHHhcCCCCCcccCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCC
Q 045468 100 KDLLIVTTGSQAEPRAALNLASYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGY 179 (221)
Q Consensus 100 ~~~vi~~~g~~~e~~~~l~~~~~~~~~~~~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~ 179 (221)
++.+++++|.+.-+ +.+.... +++||.|++..+..+++... ....|++++..+.+ .....+.+
T Consensus 97 ~~~i~vt~G~~~al-~~~~~~~--------~~~gd~Vlv~~P~y~~~~~~-------~~~~g~~~~~v~~~-~~~~~~~d 159 (394)
T PRK05942 97 DSEALPLLGSKEGL-THLALAY--------VNPGDVVLVPSPAYPAHFRG-------PLIAGAQIYPIILK-PENDWLID 159 (394)
T ss_pred CCeEEEccChHHHH-HHHHHHh--------CCCCCEEEEcCCCCcchHHH-------HHHcCCEEEEeecC-CccCCccC
Confidence 34466666764333 2222222 24899999888766654332 23468877632111 01123577
Q ss_pred HHHHHHHHHHcCCCEEEEcCCC--------hHHHHHHHHHHHhcCC
Q 045468 180 RGELEEVLKLVKPQHFLPIHGE--------LLFLKEHELLGRSTGI 217 (221)
Q Consensus 180 ~~dL~~~i~~i~Pk~iiPVHge--------~~~~~~~~~~~~~~g~ 217 (221)
.+++.+.+.. ++|.++-.+=- ..++.+..++|++.|+
T Consensus 160 ~~~l~~~~~~-~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~ 204 (394)
T PRK05942 160 LSSIPEEVAQ-QAKILYFNYPSNPTTATAPREFFEEIVAFARKYEI 204 (394)
T ss_pred HHHHHHhccc-cceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCe
Confidence 7888776643 67777754322 2357788888887764
No 53
>PLN02368 alanine transaminase
Probab=70.32 E-value=53 Score=29.24 Aligned_cols=95 Identities=17% Similarity=0.108 Sum_probs=55.4
Q ss_pred EEEecCCCccHHHHHHHHhcCCCCCcccCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeee----cCC
Q 045468 103 LIVTTGSQAEPRAALNLASYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTS----GHG 178 (221)
Q Consensus 103 vi~~~g~~~e~~~~l~~~~~~~~~~~~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~S----GHA 178 (221)
++++.|.+.-+...+.-+.. ++||.|++-.+..+++... +...|.+++. +.+. -+-
T Consensus 133 I~it~Ga~~al~~~~~~l~~--------~pGd~Vli~~P~Y~~y~~~-------~~~~g~~~v~-----v~~~~~~~~~~ 192 (407)
T PLN02368 133 IFLTDGASKGVMQILNAVIR--------GEKDGVLVPVPQYPLYSAT-------ISLLGGTLVP-----YYLEESENWGL 192 (407)
T ss_pred EEEcccHHHHHHHHHHHHcC--------CCCCEEEEeCCCCccHHHH-------HHHcCCEEEE-----EecccccCCCC
Confidence 66666764333333332221 3789999888877766543 3456777662 2221 246
Q ss_pred CHHHHHHHHHHc-----CCCEEEEcCC--------ChHHHHHHHHHHHhcCC
Q 045468 179 YRGELEEVLKLV-----KPQHFLPIHG--------ELLFLKEHELLGRSTGI 217 (221)
Q Consensus 179 ~~~dL~~~i~~i-----~Pk~iiPVHg--------e~~~~~~~~~~~~~~g~ 217 (221)
+.++|...++.. ++|.++-..- ...++.+.++++++.|+
T Consensus 193 d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~ 244 (407)
T PLN02368 193 DVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERL 244 (407)
T ss_pred CHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCC
Confidence 678887777642 4564443332 34477788888887764
No 54
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=69.71 E-value=52 Score=28.30 Aligned_cols=80 Identities=14% Similarity=0.150 Sum_probs=49.3
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCChH-----HH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGELL-----FL 205 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~~-----~~ 205 (221)
+++|.++.+.+..+++ ...+..+....|++++..+. ...|+.+.++|++.++. +|+.++-.|..++ .+
T Consensus 84 ~~gd~vl~~~~~~~~~---~~~~~~~~~~~g~~~~~v~~---~~~~~~d~~~l~~~~~~-~~~~v~~~~~~n~tG~~~~~ 156 (376)
T TIGR01977 84 KEGDHVITTPMEHNSV---ARPLECLKEQIGVEITIVKC---DNEGLISPERIKRAIKT-NTKLIVVSHASNVTGTILPI 156 (376)
T ss_pred CCCCEEEECcchhhHH---HHHHHHHHHHcCcEEEEEec---CCCCCcCHHHHHHhcCC-CCeEEEEECCCCCccccCCH
Confidence 4788888776533332 22333444556887763221 12477888888887743 6777777675443 56
Q ss_pred HHHHHHHHhcCC
Q 045468 206 KEHELLGRSTGI 217 (221)
Q Consensus 206 ~~~~~~~~~~g~ 217 (221)
.+..+++++.|+
T Consensus 157 ~~i~~l~~~~~~ 168 (376)
T TIGR01977 157 EEIGELAQENGI 168 (376)
T ss_pred HHHHHHHHHcCC
Confidence 677778887764
No 55
>PRK06234 methionine gamma-lyase; Provisional
Probab=69.62 E-value=43 Score=29.69 Aligned_cols=73 Identities=12% Similarity=0.134 Sum_probs=45.7
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEE---EcC--CChHHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFL---PIH--GELLFL 205 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~ii---PVH--ge~~~~ 205 (221)
++||.+|.+.+..++ ....+...+...|+++. .+.. .+.++++..++. +++.++ |.+ |.-.++
T Consensus 101 ~~Gd~Vl~~~~~y~~---~~~~~~~~~~~~G~~v~-----~vd~---~d~e~l~~~i~~-~tklI~iesP~NPtG~v~dl 168 (400)
T PRK06234 101 KAGDHVVASDTLYGC---TFALLNHGLTRYGVEVT-----FVDT---SNLEEVRNALKA-NTKVVYLETPANPTLKVTDI 168 (400)
T ss_pred CCCCEEEEecCccch---HHHHHHHHHhhCCeEEE-----EECC---CCHHHHHHHhcc-CCeEEEEECCCCCCCCcCCH
Confidence 488988887753322 22233455677898776 3322 255665555432 567777 654 666778
Q ss_pred HHHHHHHHhc
Q 045468 206 KEHELLGRST 215 (221)
Q Consensus 206 ~~~~~~~~~~ 215 (221)
.+.+++++++
T Consensus 169 ~~I~~la~~~ 178 (400)
T PRK06234 169 KAISNIAHEN 178 (400)
T ss_pred HHHHHHHHhc
Confidence 8889999886
No 56
>PRK09082 methionine aminotransferase; Validated
Probab=69.53 E-value=38 Score=29.55 Aligned_cols=77 Identities=9% Similarity=-0.067 Sum_probs=45.5
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCC--------Ch
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHG--------EL 202 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHg--------e~ 202 (221)
+++|.|++..+..+++ ..++...|++++..+.+. ..+..+.+++++.++. +++.++-.+= -.
T Consensus 113 ~~gd~Vli~~p~y~~~-------~~~~~~~g~~~~~~~~~~--~~~~~d~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~ 182 (386)
T PRK09082 113 RPGDEVIVFDPSYDSY-------APAIELAGGRAVRVALQP--PDFRVDWQRFAAAISP-RTRLIILNTPHNPSGTVWSA 182 (386)
T ss_pred CCCCEEEEeCCCchhh-------HHHHHHcCCEEEEEecCc--ccccCCHHHHHHhcCc-cceEEEEeCCCCCCCcCCCH
Confidence 3789988877654443 344555688877322111 1356677777766542 4555544321 12
Q ss_pred HHHHHHHHHHHhcCC
Q 045468 203 LFLKEHELLGRSTGI 217 (221)
Q Consensus 203 ~~~~~~~~~~~~~g~ 217 (221)
.++.+..++|++.|+
T Consensus 183 ~~~~~i~~~a~~~~i 197 (386)
T PRK09082 183 ADMRALWQLIAGTDI 197 (386)
T ss_pred HHHHHHHHHHHHCCE
Confidence 477888889888774
No 57
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=69.41 E-value=1.1e+02 Score=29.38 Aligned_cols=53 Identities=17% Similarity=0.314 Sum_probs=35.2
Q ss_pred CccccCCCCC--CCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHHHH
Q 045468 1 MMSDSTNVLS--PGRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADL 56 (221)
Q Consensus 1 Li~EsT~~~~--~~~~~sE~~v~~~i~~~~~~~~g~viv~~~a~ni~Rl~~i~~~a~~ 56 (221)
||+++-++.. +.+...-+.+.+.+.+.+.+ +|.|++|+-. -+|..+++.+..+
T Consensus 194 lITda~~~~~~~~~rkkRDe~f~d~v~~~L~~-~G~VlipVDt--AgRvLELa~iLdq 248 (764)
T KOG1135|consen 194 LITDANHALYSQPRRKKRDEQFLDTVLKTLRS-GGNVLIPVDT--AGRVLELALILDQ 248 (764)
T ss_pred EEeccccccccccchhHHHHHHHHHHHHHhcC-CCcEEEEecc--cHHHHHHHHHHHH
Confidence 3555555543 23344556788888888754 8999999977 6787777766443
No 58
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=69.36 E-value=34 Score=29.51 Aligned_cols=63 Identities=14% Similarity=0.122 Sum_probs=44.1
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEec---cccHHHHHHHHHHHHHcCCeEEEEccc
Q 045468 5 STNVLSPGRTTSESVVKDALMRHVSAA--KGRVITTQF---ASNIHRLGSVKAAADLTGRKLVFVGMS 67 (221)
Q Consensus 5 sT~~~~~~~~~sE~~v~~~i~~~~~~~--~g~viv~~~---a~ni~Rl~~i~~~a~~~gR~~vi~~~~ 67 (221)
-|-+..+|...+|.++.+.+..+-... ...|+++-+ .-.-+-..++++.|++.|.+++++...
T Consensus 101 ~Tein~~Gp~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg 168 (310)
T COG1105 101 ETEINFPGPEISEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTSG 168 (310)
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECCh
Confidence 355777888999999888776654412 234444431 124667889999999999999998544
No 59
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=69.09 E-value=58 Score=28.46 Aligned_cols=81 Identities=16% Similarity=0.080 Sum_probs=49.2
Q ss_pred cCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCC-----hHH
Q 045468 130 LTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGE-----LLF 204 (221)
Q Consensus 130 ~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge-----~~~ 204 (221)
+++||.|+.+....|+ ....+.......|+++...+ ....|..+.++++..++. +++.++-.|-. ...
T Consensus 106 ~~~gd~vl~~~~~~~s---~~~~~~~~~~~~g~~v~~v~---~~~~~~~d~~~l~~~i~~-~t~lv~i~~~~n~tG~~~~ 178 (401)
T PRK10874 106 LQPGDEIIVSEAEHHA---NLVPWLMVAQQTGAKVVKLP---LGADRLPDVDLLPELITP-RTRILALGQMSNVTGGCPD 178 (401)
T ss_pred CCCcCEEEECCcchHH---HHHHHHHHHHHhCCEEEEEe---cCCCCcCCHHHHHHhcCc-CcEEEEEeCCcccccCcCC
Confidence 3588988888764443 22233344456788776322 223567777777776632 55666555533 336
Q ss_pred HHHHHHHHHhcCC
Q 045468 205 LKEHELLGRSTGI 217 (221)
Q Consensus 205 ~~~~~~~~~~~g~ 217 (221)
+.+.++++++.|+
T Consensus 179 ~~~i~~l~~~~g~ 191 (401)
T PRK10874 179 LARAITLAHQAGM 191 (401)
T ss_pred HHHHHHHHHHcCC
Confidence 7788888888874
No 60
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=69.01 E-value=44 Score=29.49 Aligned_cols=75 Identities=12% Similarity=0.141 Sum_probs=44.9
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEE---EcC--CChHHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFL---PIH--GELLFL 205 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~ii---PVH--ge~~~~ 205 (221)
++||.||.+....+++ ...+.+.+...|+++. .+.. .+.+++.+.++. +++.++ |.+ |.-.++
T Consensus 98 ~~Gd~Vi~~~~~y~~t---~~~~~~~~~~~G~~v~-----~vd~---~d~~~l~~~i~~-~tklV~ie~p~NptG~v~dl 165 (390)
T PRK08133 98 QAGDHVVSSRSLFGST---VSLFEKIFARFGIETT-----FVDL---TDLDAWRAAVRP-NTKLFFLETPSNPLTELADI 165 (390)
T ss_pred CCCCEEEEccCcchhH---HHHHHHHHHHcCcEEE-----EECC---CCHHHHHHhcCc-CCeEEEEECCCCCCCCcCCH
Confidence 4788888876533332 2233345667898776 2221 255555554432 446666 543 455678
Q ss_pred HHHHHHHHhcCC
Q 045468 206 KEHELLGRSTGI 217 (221)
Q Consensus 206 ~~~~~~~~~~g~ 217 (221)
.+.+++|++.|+
T Consensus 166 ~~I~~la~~~gi 177 (390)
T PRK08133 166 AALAEIAHAAGA 177 (390)
T ss_pred HHHHHHHHHcCC
Confidence 888999998885
No 61
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=68.08 E-value=72 Score=27.89 Aligned_cols=77 Identities=19% Similarity=0.132 Sum_probs=46.8
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecC-CCHHHHHHHHHHc--CCCEEEEcC-----CC-
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGH-GYRGELEEVLKLV--KPQHFLPIH-----GE- 201 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGH-A~~~dL~~~i~~i--~Pk~iiPVH-----ge- 201 (221)
.++|.|++.++..+++.. .+...|++++..+. +..++ -+.++|.+.++.. +++.++..| |-
T Consensus 113 ~~gd~vl~~~p~y~~~~~-------~~~~~g~~~~~~~~---~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~ 182 (391)
T PRK07309 113 EPGDKVLLPAPAYPGYEP-------IVNLVGAEIVEIDT---TENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVT 182 (391)
T ss_pred CCCCEEEEeCCCCcchHH-------HHHHcCCEEEEEec---CCcCCcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcC
Confidence 378998888876555533 33456887762111 11122 4567777776553 467888664 32
Q ss_pred --hHHHHHHHHHHHhcCC
Q 045468 202 --LLFLKEHELLGRSTGI 217 (221)
Q Consensus 202 --~~~~~~~~~~~~~~g~ 217 (221)
..++.+.++++++.|+
T Consensus 183 ~s~~~~~~l~~~~~~~~~ 200 (391)
T PRK07309 183 YSREQIKALADVLKKYDI 200 (391)
T ss_pred cCHHHHHHHHHHHHHcCc
Confidence 2368888888888774
No 62
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=68.07 E-value=64 Score=27.73 Aligned_cols=79 Identities=16% Similarity=0.101 Sum_probs=50.3
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCCh-----HHHH
Q 045468 132 NEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGEL-----LFLK 206 (221)
Q Consensus 132 ~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~-----~~~~ 206 (221)
+++.|+.+....++.-. .+.......|+++...+ ....|..+.++|++.+.. +++.++-.|..+ -.+.
T Consensus 87 ~g~~vl~~~~~~~~~~~---~~~~~~~~~g~~~~~v~---~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~~~tG~~~~~~ 159 (373)
T cd06453 87 PGDEIVTSVMEHHSNIV---PWQQLAERTGAKLKVVP---VDDDGQLDLEALEKLLTE-RTKLVAVTHVSNVLGTINPVK 159 (373)
T ss_pred CCCEEEECcchhHHHHH---HHHHHHhhcCcEEEEee---cCCCCCcCHHHHHHHhcC-CceEEEEeCcccccCCcCCHH
Confidence 67888887754443211 12222345677765322 224577888999888865 788888777643 3567
Q ss_pred HHHHHHHhcCC
Q 045468 207 EHELLGRSTGI 217 (221)
Q Consensus 207 ~~~~~~~~~g~ 217 (221)
+.++++++.|+
T Consensus 160 ~i~~~~~~~~~ 170 (373)
T cd06453 160 EIGEIAHEAGV 170 (373)
T ss_pred HHHHHHHHcCC
Confidence 78888888874
No 63
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=67.89 E-value=51 Score=29.30 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=45.9
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEE---EcC--CChHHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFL---PIH--GELLFL 205 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~ii---PVH--ge~~~~ 205 (221)
++||.+|.+....++ .+..+..++...|+++. .+. +.+.++++..+.. +.+.|+ |.+ |.-.++
T Consensus 107 ~~Gd~Vl~~~~~~~~---t~~~~~~~~~~~G~~v~-----~vd---~~d~~~l~~ai~~-~tklV~~esp~Nptg~v~dl 174 (403)
T PRK07810 107 GAGDRLVAARSLFGS---CFVVCNEILPRWGVETV-----FVD---GEDLSQWEEALSV-PTQAVFFETPSNPMQSLVDI 174 (403)
T ss_pred CCCCEEEEccCCcch---HHHHHHHHHHHcCcEEE-----EEC---CCCHHHHHHhcCc-CceEEEEECCCCCCCeecCH
Confidence 478888877642222 23344566777898876 221 3355555544432 345565 554 556688
Q ss_pred HHHHHHHHhcCC
Q 045468 206 KEHELLGRSTGI 217 (221)
Q Consensus 206 ~~~~~~~~~~g~ 217 (221)
.+.+++|++.|+
T Consensus 175 ~~I~~la~~~g~ 186 (403)
T PRK07810 175 AAVSELAHAAGA 186 (403)
T ss_pred HHHHHHHHHcCC
Confidence 899999999884
No 64
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=67.45 E-value=32 Score=31.19 Aligned_cols=80 Identities=10% Similarity=0.023 Sum_probs=55.9
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCC--------ChH
Q 045468 132 NEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHG--------ELL 203 (221)
Q Consensus 132 ~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHg--------e~~ 203 (221)
+++.||+++.. .....+-+...|++.+......-.-+...+.++|++.|....|+.+++||+ -..
T Consensus 150 ~gd~VI~p~~t-------h~S~~kAi~~~G~~pv~Vd~~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~d 222 (444)
T TIGR03531 150 KAKYVIWPRID-------QKSCIKAISTAGFEPRVIETVLDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPD 222 (444)
T ss_pred CCCEEEEECcC-------hHHHHHHHHHcCCeEEEeeeeecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchh
Confidence 47788888753 345567777788866522210112356778999998888665688899995 456
Q ss_pred HHHHHHHHHHhcCCC
Q 045468 204 FLKEHELLGRSTGIR 218 (221)
Q Consensus 204 ~~~~~~~~~~~~g~~ 218 (221)
++.+.+++|++.|+.
T Consensus 223 dL~eIa~la~k~gI~ 237 (444)
T TIGR03531 223 DIEEIAKICANYDIP 237 (444)
T ss_pred CHHHHHHHHHHcCCE
Confidence 889999999999863
No 65
>PRK06207 aspartate aminotransferase; Provisional
Probab=67.17 E-value=59 Score=28.70 Aligned_cols=79 Identities=16% Similarity=0.060 Sum_probs=45.0
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCcee--eeecCCCHHHHHHHHHHcCCCEEEEcCCChH-----
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGL--HTSGHGYRGELEEVLKLVKPQHFLPIHGELL----- 203 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~--h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~~----- 203 (221)
++||.|++..+..+++. ..+...|++++..+.+.. ......+.++|++.++. +++.++-.+=.+|
T Consensus 124 ~~Gd~Vlv~~P~y~~~~-------~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~-~~k~v~l~~P~NPTG~~~ 195 (405)
T PRK06207 124 ARGDKVAIVQPDYFANR-------KLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKA-GVRVFLFSNPNNPAGVVY 195 (405)
T ss_pred CCCCEEEEeCCCchhHH-------HHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhh-cCeEEEECCCCCCCCcCC
Confidence 48999988876544433 445556887752111100 01134567777766543 4665555543343
Q ss_pred ---HHHHHHHHHHhcCC
Q 045468 204 ---FLKEHELLGRSTGI 217 (221)
Q Consensus 204 ---~~~~~~~~~~~~g~ 217 (221)
++.+.++++++.|+
T Consensus 196 s~e~l~~l~~~a~~~~~ 212 (405)
T PRK06207 196 SAEEIAQIAALARRYGA 212 (405)
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 57788888887764
No 66
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=67.00 E-value=46 Score=29.92 Aligned_cols=75 Identities=15% Similarity=0.213 Sum_probs=45.5
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCC-----ChHHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHG-----ELLFL 205 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHg-----e~~~~ 205 (221)
++||.|+.+....+++ ...+...+.+.|++++ .+.. .+.+++++.++. +++.++..|= .-.++
T Consensus 101 ~~GD~Vlv~~~~y~~t---~~~~~~~~~~~Gv~v~-----~vd~---~d~e~l~~ai~~-~tklV~l~sp~NPtG~v~di 168 (431)
T PRK08248 101 SAGDEIVSSSSLYGGT---YNLFAHTLPKLGITVK-----FVDP---SDPENFEAAITD-KTKALFAETIGNPKGDVLDI 168 (431)
T ss_pred CCCCEEEEccCchhhH---HHHHHHHHHhCCEEEE-----EECC---CCHHHHHHhcCC-CCeEEEEECCCCCCCcccCH
Confidence 4789988876543333 2234456778899886 3322 355666555432 4566665443 33467
Q ss_pred HHHHHHHHhcCC
Q 045468 206 KEHELLGRSTGI 217 (221)
Q Consensus 206 ~~~~~~~~~~g~ 217 (221)
.+.++++++.|+
T Consensus 169 ~~I~~la~~~gi 180 (431)
T PRK08248 169 EAVAAIAHEHGI 180 (431)
T ss_pred HHHHHHHHHcCC
Confidence 788889998884
No 67
>PRK14012 cysteine desulfurase; Provisional
Probab=66.91 E-value=83 Score=27.60 Aligned_cols=79 Identities=14% Similarity=0.085 Sum_probs=50.0
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcC-----CChHHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIH-----GELLFL 205 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVH-----ge~~~~ 205 (221)
.++|.||.+....+.+.. ....+...|++++..+ ..-.|..+.++|.+.+.. +++.++..| |-...+
T Consensus 92 ~~gd~Vi~~~~~~~s~~~----~~~~~~~~g~~~~~v~---~~~~g~~d~~~l~~~i~~-~t~lv~~~~~~n~tG~~~~~ 163 (404)
T PRK14012 92 KKGKHIITSKTEHKAVLD----TCRQLEREGFEVTYLD---PQSNGIIDLEKLEAAMRD-DTILVSIMHVNNEIGVIQDI 163 (404)
T ss_pred CCCCEEEEecCccHHHHH----HHHHHHhCCCEEEEEc---cCCCCcCCHHHHHHhcCC-CCEEEEEECcCCCccchhhH
Confidence 378888887654333322 2234556788776322 223566778888777643 567776766 455577
Q ss_pred HHHHHHHHhcCC
Q 045468 206 KEHELLGRSTGI 217 (221)
Q Consensus 206 ~~~~~~~~~~g~ 217 (221)
.+.++++++.|+
T Consensus 164 ~~I~~la~~~g~ 175 (404)
T PRK14012 164 AAIGEICRERGI 175 (404)
T ss_pred HHHHHHHHHcCC
Confidence 888889998884
No 68
>PRK07681 aspartate aminotransferase; Provisional
Probab=66.81 E-value=56 Score=28.64 Aligned_cols=96 Identities=18% Similarity=0.106 Sum_probs=53.5
Q ss_pred EEEEecCCCccHHHHHHHHhcCCCCCcccCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeec--CCC
Q 045468 102 LLIVTTGSQAEPRAALNLASYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSG--HGY 179 (221)
Q Consensus 102 ~vi~~~g~~~e~~~~l~~~~~~~~~~~~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SG--HA~ 179 (221)
-+++++|.+.- ++.+..... ++||.|++..+..+++.. .+...|++++..+. ...+ ..+
T Consensus 95 ~I~it~G~~~a-l~~~~~~~~--------~~Gd~Vlv~~P~y~~~~~-------~~~~~G~~~~~v~~---~~~~~~~~d 155 (399)
T PRK07681 95 EVLLLMGSQDG-LVHLPMVYA--------NPGDIILVPDPGYTAYET-------GIQMAGATSYYMPL---KKENDFLPD 155 (399)
T ss_pred eEEECCCcHHH-HHHHHHHhC--------CCCCEEEECCCCccchHH-------HHHhcCCEEEEEec---CCCCCCcCC
Confidence 46667776433 333332222 489999988876666543 24456887762111 1111 235
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCh--------HHHHHHHHHHHhcCC
Q 045468 180 RGELEEVLKLVKPQHFLPIHGEL--------LFLKEHELLGRSTGI 217 (221)
Q Consensus 180 ~~dL~~~i~~i~Pk~iiPVHge~--------~~~~~~~~~~~~~g~ 217 (221)
.++|.+.+. -+++.++..+--+ .++.+.++++++.|+
T Consensus 156 ~~~l~~~~~-~~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~ 200 (399)
T PRK07681 156 LELIPEEIA-DKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNI 200 (399)
T ss_pred HHHHHHhcc-ccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCe
Confidence 556555442 2577887775222 357777888887763
No 69
>PRK09148 aminotransferase; Validated
Probab=66.76 E-value=46 Score=29.36 Aligned_cols=96 Identities=19% Similarity=0.164 Sum_probs=56.3
Q ss_pred EEEEecCCCccHHHHHHHHhcCCCCCcccCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHH
Q 045468 102 LLIVTTGSQAEPRAALNLASYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRG 181 (221)
Q Consensus 102 ~vi~~~g~~~e~~~~l~~~~~~~~~~~~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~ 181 (221)
-+++++|++.-+...+.- .. ++||.|++..+..+++... +...|++++..+. ...+ -..+
T Consensus 94 ~I~it~G~~~al~~~~~~-l~--------~~gd~Vl~~~P~y~~~~~~-------~~~~g~~v~~v~~---~~~~-~~~~ 153 (405)
T PRK09148 94 QVVATLGSKEGFANMAQA-IT--------APGDVILCPNPSYPIHAFG-------FIMAGGVIRSVPA---EPDE-EFFP 153 (405)
T ss_pred cEEEcCChHHHHHHHHHH-hc--------CCCCEEEEcCCCCcccHHH-------HHhcCCEEEEEeC---CCCC-CCcc
Confidence 367777775443333322 22 3799999988877776443 2346887752111 1111 1356
Q ss_pred HHHHHHHHc--CCCEEEEcCCC--------hHHHHHHHHHHHhcCC
Q 045468 182 ELEEVLKLV--KPQHFLPIHGE--------LLFLKEHELLGRSTGI 217 (221)
Q Consensus 182 dL~~~i~~i--~Pk~iiPVHge--------~~~~~~~~~~~~~~g~ 217 (221)
++.+.++.. +++.+++.+=- ..++.+.++++++.|+
T Consensus 154 ~l~~~~~~~~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~ 199 (405)
T PRK09148 154 ALERAVRHSIPKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDI 199 (405)
T ss_pred CHHHHHhhccccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCe
Confidence 777777654 56788888622 3356677778887763
No 70
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=66.43 E-value=62 Score=28.32 Aligned_cols=79 Identities=14% Similarity=0.051 Sum_probs=50.4
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHc------CCCEEEEcCCC---
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLV------KPQHFLPIHGE--- 201 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i------~Pk~iiPVHge--- 201 (221)
+++|.|+.+.. +.-.. ...+...|++++..+.. ....|+.+.+++.+.++.. +|+.++-.|..
T Consensus 100 ~~gd~Vlv~~~---~h~s~----~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~t 171 (387)
T PRK09331 100 KKGDYVVLDGL---AHYTS----YVAAERAGLNVREVPKT-GYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNY 171 (387)
T ss_pred CCCCEEEECCC---chHHH----HHHHHHcCCEEEEEeCc-cCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCC
Confidence 37888777644 22221 22356678887621110 0236788999999988764 67888877643
Q ss_pred --hHHHHHHHHHHHhcCC
Q 045468 202 --LLFLKEHELLGRSTGI 217 (221)
Q Consensus 202 --~~~~~~~~~~~~~~g~ 217 (221)
...+.+.++++++.|+
T Consensus 172 G~~~~l~~I~~la~~~g~ 189 (387)
T PRK09331 172 GNLADAKKVAKVAHEYGI 189 (387)
T ss_pred cccccHHHHHHHHHHcCC
Confidence 3467788888888874
No 71
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=65.81 E-value=64 Score=25.33 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=35.7
Q ss_pred eecCCCHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHhcCCCC
Q 045468 174 TSGHGYRGELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGIRH 219 (221)
Q Consensus 174 ~SGHA~~~dL~~~i~~i~Pk~iiPVHge~~~~~~~~~~~~~~g~~~ 219 (221)
++.+..+.++.+++........+-+=|..++..+..+.+.+.|+++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~vyicGp~~m~~~~~~~l~~~gv~~ 202 (211)
T cd06185 157 FDDEGGRLDLAALLAAPPAGTHVYVCGPEGMMDAVRAAAAALGWPE 202 (211)
T ss_pred ECCCCCccCHHHHhccCCCCCEEEEECCHHHHHHHHHHHHHcCCCh
Confidence 3444456677777776655578889999999999999999999975
No 72
>PLN02409 serine--glyoxylate aminotransaminase
Probab=65.30 E-value=70 Score=28.23 Aligned_cols=79 Identities=10% Similarity=-0.037 Sum_probs=47.8
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHH---cCCCEEEEcCCChH----
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKL---VKPQHFLPIHGELL---- 203 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~---i~Pk~iiPVHge~~---- 203 (221)
++||.|+.+.+..++ . .+.+...+.|+++...+. ...+..+.++|+..++. -+++.++-+|-+.+
T Consensus 82 ~~Gd~Vlv~~~~~~~---~--~~~~~~~~~g~~v~~v~~---~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~ 153 (401)
T PLN02409 82 SPGDKVVSFRIGQFS---L--LWIDQMQRLNFDVDVVES---PWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVT 153 (401)
T ss_pred CCCCEEEEeCCCchh---H--HHHHHHHHcCCceEEEEC---CCCCCCCHHHHHHHHhhCcCCCccEEEEEeeccccccc
Confidence 588998888754333 1 233556677887762211 11123578888888875 26788888886533
Q ss_pred -HHHHHHHH--HHhcCC
Q 045468 204 -FLKEHELL--GRSTGI 217 (221)
Q Consensus 204 -~~~~~~~~--~~~~g~ 217 (221)
.+.+.+++ +++.|+
T Consensus 154 ~~~~~i~~l~~~~~~g~ 170 (401)
T PLN02409 154 NDLAGVRKLLDCAQHPA 170 (401)
T ss_pred CCHHHHHHHHhhhccCc
Confidence 44555556 776663
No 73
>PRK12414 putative aminotransferase; Provisional
Probab=65.29 E-value=59 Score=28.39 Aligned_cols=77 Identities=14% Similarity=0.053 Sum_probs=44.3
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCCh--------
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGEL-------- 202 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~-------- 202 (221)
++||.++...+..+++. .++...|.+++..+.+. ..++.+.++|.+.++. +++.++-.+--+
T Consensus 112 ~~gd~Vlv~~p~y~~~~-------~~~~~~g~~~~~v~~~~--~~~~~d~~~l~~~l~~-~~~~v~i~~p~NPTG~~~s~ 181 (384)
T PRK12414 112 HPGDEVIYFEPSFDSYA-------PIVRLQGATPVAIKLSP--EDFRVNWDEVAAAITP-RTRMIIVNTPHNPSATVFSA 181 (384)
T ss_pred CCCCEEEEeCCCccchH-------HHHHHcCCEEEEEecCc--cccccCHHHHHhhcCc-ccEEEEEcCCCCCCCcCCCH
Confidence 48899888765443332 33445687766221110 1345677777766542 567666543322
Q ss_pred HHHHHHHHHHHhcCC
Q 045468 203 LFLKEHELLGRSTGI 217 (221)
Q Consensus 203 ~~~~~~~~~~~~~g~ 217 (221)
.++.+.+++|++.|+
T Consensus 182 ~~~~~i~~~a~~~~~ 196 (384)
T PRK12414 182 ADLARLAQLTRNTDI 196 (384)
T ss_pred HHHHHHHHHHHHCCe
Confidence 367777788887774
No 74
>PLN02656 tyrosine transaminase
Probab=64.25 E-value=64 Score=28.48 Aligned_cols=78 Identities=12% Similarity=-0.092 Sum_probs=44.6
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCChH-------
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGELL------- 203 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~~------- 203 (221)
++||.|++..+..+++... ....|++++..+... .....-+.++|+..++. +++.++..|--+|
T Consensus 118 ~~gd~Vlv~~p~y~~~~~~-------~~~~g~~~~~i~~~~-~~~~~~d~~~l~~~~~~-~~~~v~l~~P~NPtG~~~s~ 188 (409)
T PLN02656 118 RPGANILLPRPGFPIYELC-------AAFRHLEVRYVDLLP-EKGWEVDLDAVEALADQ-NTVALVIINPGNPCGNVYSY 188 (409)
T ss_pred CCCCeEEEeCCCCCcHHHH-------HHHcCCEEEEEeCCC-cCCCCCCHHHHHHHhcc-CceEEEEECCCCCCCCCCCH
Confidence 3889999988766655332 223577765211100 01123566666655432 4566777665443
Q ss_pred -HHHHHHHHHHhcCC
Q 045468 204 -FLKEHELLGRSTGI 217 (221)
Q Consensus 204 -~~~~~~~~~~~~g~ 217 (221)
++.+.+++|++.|+
T Consensus 189 ~~~~~i~~~a~~~~~ 203 (409)
T PLN02656 189 QHLKKIAETAEKLKI 203 (409)
T ss_pred HHHHHHHHHHHHcCC
Confidence 57778888888774
No 75
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=63.38 E-value=76 Score=28.13 Aligned_cols=100 Identities=20% Similarity=0.125 Sum_probs=58.1
Q ss_pred CCEEEEecCCCccHHHHHHHHhcCCCCCcccCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCc-eeeeecCC
Q 045468 100 KDLLIVTTGSQAEPRAALNLASYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNE-GLHTSGHG 178 (221)
Q Consensus 100 ~~~vi~~~g~~~e~~~~l~~~~~~~~~~~~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~-~~h~SGHA 178 (221)
++-++++.|.+.-++..+.-+ +++||.||+-.+.+|.|... ..-.|.+++..+.. .- .--..
T Consensus 89 ~~eiivt~Ga~~al~~~~~a~---------~~pGDeVlip~P~Y~~y~~~-------~~~~gg~~v~v~l~~~~-~~f~~ 151 (393)
T COG0436 89 EEEIIVTAGAKEALFLAFLAL---------LNPGDEVLIPDPGYPSYEAA-------VKLAGGKPVPVPLDEEE-NGFKP 151 (393)
T ss_pred CCeEEEeCCHHHHHHHHHHHh---------cCCCCEEEEeCCCCcCHHHH-------HHhcCCEEEEEeCCcCc-cCCcC
Confidence 343677777644444333322 24899999888767766543 44568877621100 00 12355
Q ss_pred CHHHHHHHHHHcCCCEEEEcCC--------ChHHHHHHHHHHHhcCC
Q 045468 179 YRGELEEVLKLVKPQHFLPIHG--------ELLFLKEHELLGRSTGI 217 (221)
Q Consensus 179 ~~~dL~~~i~~i~Pk~iiPVHg--------e~~~~~~~~~~~~~~g~ 217 (221)
+.++|...+.. +.|.++-.-= ...++.+.+++|+++|+
T Consensus 152 d~~~l~~~i~~-ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i 197 (393)
T COG0436 152 DLEDLEAAITP-KTKAIILNSPNNPTGAVYSKEELKAIVELAREHDI 197 (393)
T ss_pred CHHHHHhhcCc-cceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCe
Confidence 66677666666 5665554221 34578888888888874
No 76
>PRK07503 methionine gamma-lyase; Provisional
Probab=63.23 E-value=54 Score=29.08 Aligned_cols=75 Identities=12% Similarity=0.161 Sum_probs=45.5
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEE---EcC--CChHHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFL---PIH--GELLFL 205 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~ii---PVH--ge~~~~ 205 (221)
++||.||.+.+...++ ...+...+...|+++. .+.. .+.++|.+.++. +++.++ |.| |.-.++
T Consensus 102 ~~Gd~Viv~~~~y~~t---~~~~~~~~~~~G~~v~-----~vd~---~d~~~l~~~i~~-~tklV~le~p~NPtG~~~di 169 (403)
T PRK07503 102 RPGDEVIVDQTLYGCT---FAFLHHGLGEFGVTVR-----HVDL---TDPAALKAAISD-KTRMVYFETPANPNMRLVDI 169 (403)
T ss_pred CCCCEEEEccCccchH---HHHHHHHHhhCCEEEE-----EeCC---CCHHHHHHhcCc-cCcEEEEeCCCCCCCeeeCH
Confidence 4899988876532222 1222344667888775 2221 245666555533 567776 443 666678
Q ss_pred HHHHHHHHhcCC
Q 045468 206 KEHELLGRSTGI 217 (221)
Q Consensus 206 ~~~~~~~~~~g~ 217 (221)
.+.+++|++.|+
T Consensus 170 ~~I~~la~~~gi 181 (403)
T PRK07503 170 AAVAEIAHGAGA 181 (403)
T ss_pred HHHHHHHHHcCC
Confidence 888999998885
No 77
>PRK07324 transaminase; Validated
Probab=62.82 E-value=46 Score=28.99 Aligned_cols=78 Identities=12% Similarity=0.112 Sum_probs=43.2
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcC-----C---Ch
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIH-----G---EL 202 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVH-----g---e~ 202 (221)
++||.|+...+ ++.. ..+.....|++++..+.+. ......+.++|.+.+.. ++|.++-.| | ..
T Consensus 102 ~~gd~Vl~~~P---~y~~----~~~~~~~~g~~v~~v~~~~-~~~~~~d~~~l~~~~~~-~~kli~i~~p~NPtG~~~~~ 172 (373)
T PRK07324 102 EPGDHVISVYP---TYQQ----LYDIPESLGAEVDYWQLKE-ENGWLPDLDELRRLVRP-NTKLICINNANNPTGALMDR 172 (373)
T ss_pred CCCCEEEEcCC---Cchh----HHHHHHHcCCEEEEEeccc-ccCCCCCHHHHHHhCCC-CCcEEEEeCCCCCCCCCCCH
Confidence 47898887654 4322 2345566788776211100 01123466666655432 567665444 2 33
Q ss_pred HHHHHHHHHHHhcCC
Q 045468 203 LFLKEHELLGRSTGI 217 (221)
Q Consensus 203 ~~~~~~~~~~~~~g~ 217 (221)
.++.+.+++|++.|+
T Consensus 173 ~~l~~i~~~a~~~~~ 187 (373)
T PRK07324 173 AYLEEIVEIARSVDA 187 (373)
T ss_pred HHHHHHHHHHHHCCC
Confidence 357888888988874
No 78
>PRK02948 cysteine desulfurase; Provisional
Probab=62.55 E-value=63 Score=28.00 Aligned_cols=78 Identities=15% Similarity=0.085 Sum_probs=48.5
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCC-----hHHHH
Q 045468 132 NEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGE-----LLFLK 206 (221)
Q Consensus 132 ~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge-----~~~~~ 206 (221)
+++.++.+....|.+.. ....+...|+++...+ ....||.+.++|.+.++. +++.++..|.. ...+.
T Consensus 87 ~g~~vv~~~~~h~s~~~----~~~~~~~~g~~v~~v~---~~~~~~~d~~~l~~~l~~-~~~lv~~~~~~n~tG~~~~~~ 158 (381)
T PRK02948 87 NKKHIITTPMEHASIHS----YFQSLESQGYTVTEIP---VDKSGLIRLVDLERAITP-DTVLASIQHANSEIGTIQPIA 158 (381)
T ss_pred CCCEEEECCcccHHHHH----HHHHHHhCCCEEEEEe---eCCCCCCCHHHHHHhcCC-CCEEEEEECCcCCcEeehhHH
Confidence 67787777654444332 2345566788776322 233578888888776532 45677776654 34677
Q ss_pred HHHHHHHhcCC
Q 045468 207 EHELLGRSTGI 217 (221)
Q Consensus 207 ~~~~~~~~~g~ 217 (221)
+.++++++.|+
T Consensus 159 ~I~~l~~~~~~ 169 (381)
T PRK02948 159 EIGALLKKYNV 169 (381)
T ss_pred HHHHHHHHcCC
Confidence 77888888773
No 79
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=62.20 E-value=70 Score=27.99 Aligned_cols=76 Identities=16% Similarity=0.122 Sum_probs=52.4
Q ss_pred EEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCC--CEEEEcCCChHHHHHHHHHH
Q 045468 135 VILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKP--QHFLPIHGELLFLKEHELLG 212 (221)
Q Consensus 135 ~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~P--k~iiPVHge~~~~~~~~~~~ 212 (221)
+|||.+. .|+ .....+.+.+...|+++... ...- ....|.+.++..++. ...|-+|+.+.+.....+-|
T Consensus 128 aiiYd~~--~~~-~~lq~l~~~~~~~g~~v~~~---~~~~---~~~~d~~~~L~~ik~~~~~~iil~~~~~~~~~il~qa 198 (371)
T cd06388 128 VFLYDTD--RGY-SILQAIMEKAGQNGWQVSAI---CVEN---FNDASYRRLLEDLDRRQEKKFVIDCEIERLQNILEQI 198 (371)
T ss_pred EEEecCC--ccH-HHHHHHHHhhHhcCCeeeeE---Eecc---CCcHHHHHHHHHhcccccEEEEEECCHHHHHHHHHHH
Confidence 5566543 244 33556778888889887620 1111 223488888888863 36777899999999999999
Q ss_pred HhcCCCC
Q 045468 213 RSTGIRH 219 (221)
Q Consensus 213 ~~~g~~~ 219 (221)
++.|++.
T Consensus 199 ~~~gm~~ 205 (371)
T cd06388 199 VSVGKHV 205 (371)
T ss_pred HhcCccc
Confidence 9999864
No 80
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=61.98 E-value=49 Score=28.83 Aligned_cols=75 Identities=11% Similarity=0.160 Sum_probs=46.7
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEE---EcC--CChHHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFL---PIH--GELLFL 205 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~ii---PVH--ge~~~~ 205 (221)
.+||.+|.+.+..++.-. .+...+...|+++. .+.. .+.++++..++. +++.++ |.+ +...++
T Consensus 88 ~~Gd~Vl~~~~~y~~t~~---~~~~~~~~~G~~v~-----~vd~---~d~~~l~~~i~~-~tklv~le~P~NP~~~~~dl 155 (366)
T PRK08247 88 RSGDELIVSSDLYGGTYR---LFEEHWKKWNVRFV-----YVNT---ASLKAIEQAITP-NTKAIFIETPTNPLMQETDI 155 (366)
T ss_pred CCCCEEEEecCCcCcHHH---HHHHHhhccCceEE-----EECC---CCHHHHHHhccc-CceEEEEECCCCCCCcHHHH
Confidence 478888888765554322 23345667888876 2322 255555555433 566666 332 556688
Q ss_pred HHHHHHHHhcCC
Q 045468 206 KEHELLGRSTGI 217 (221)
Q Consensus 206 ~~~~~~~~~~g~ 217 (221)
.+.++++++.|+
T Consensus 156 ~~I~~la~~~g~ 167 (366)
T PRK08247 156 AAIAKIAKKHGL 167 (366)
T ss_pred HHHHHHHHHcCC
Confidence 899999998884
No 81
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=61.80 E-value=84 Score=27.34 Aligned_cols=95 Identities=18% Similarity=0.180 Sum_probs=51.4
Q ss_pred EEEEecCCCccHHHHHHHHhcCCCCCcccCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHH
Q 045468 102 LLIVTTGSQAEPRAALNLASYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRG 181 (221)
Q Consensus 102 ~vi~~~g~~~e~~~~l~~~~~~~~~~~~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~ 181 (221)
.++++.|++.-+ ..+.+... ++||.|++..+..+++.. .+...|++++..+ ++..|. ...
T Consensus 94 ~I~it~Gs~~al-~~~~~~l~--------~~gd~Vlv~~P~y~~~~~-------~~~~~g~~~~~v~---~~~~~~-~~~ 153 (388)
T PRK07366 94 EVLPLIGSQEGT-AHLPLAVL--------NPGDFALLLDPGYPSHAG-------GVYLAGGQIYPMP---LRAEND-FLP 153 (388)
T ss_pred eEEECCCcHHHH-HHHHHHhC--------CCCCEEEEcCCCCcchHH-------HHHhcCCEEEEEE---CCCccC-CCC
Confidence 466677774433 33333222 389999888876666543 2344688776211 111121 234
Q ss_pred HHHHHHHHc--CCCEEEEcCCC--------hHHHHHHHHHHHhcC
Q 045468 182 ELEEVLKLV--KPQHFLPIHGE--------LLFLKEHELLGRSTG 216 (221)
Q Consensus 182 dL~~~i~~i--~Pk~iiPVHge--------~~~~~~~~~~~~~~g 216 (221)
|+..+.+.+ +||.++...-- ..++.+.+++|++.|
T Consensus 154 d~~~l~~~~~~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~ 198 (388)
T PRK07366 154 VFADIPTEVLAQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHD 198 (388)
T ss_pred CHHHHHHhhcccceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcC
Confidence 455555444 56666654422 246777777888766
No 82
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=60.86 E-value=80 Score=28.04 Aligned_cols=94 Identities=12% Similarity=-0.025 Sum_probs=53.8
Q ss_pred EEEEecCCCccHHHHHHHHhcCCCCCcccCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHH
Q 045468 102 LLIVTTGSQAEPRAALNLASYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRG 181 (221)
Q Consensus 102 ~vi~~~g~~~e~~~~l~~~~~~~~~~~~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~ 181 (221)
-++++.|.+.-+...+.- .. ++||.|++..+..+++. ..+...|++++..+. ...| -+.+
T Consensus 143 ~Iiit~G~~~al~~~~~~-l~--------~pgd~Vlv~~P~y~~~~-------~~~~~~g~~~~~v~~---~~~g-~~~~ 202 (431)
T PRK15481 143 EIDLTSGAIDAIERLLCA-HL--------LPGDSVAVEDPCFLSSI-------NMLRYAGFSASPVSV---DAEG-MQPE 202 (431)
T ss_pred eEEEecCcHHHHHHHHHH-hC--------CCCCEEEEeCCCcHHHH-------HHHHHcCCeEEeecc---CCCC-CCHH
Confidence 467777774433322222 22 38999988887554443 345567887763221 1123 5677
Q ss_pred HHHHHHHHcCCCEEEEc--CC-------ChHHHHHHHHHHHhc-C
Q 045468 182 ELEEVLKLVKPQHFLPI--HG-------ELLFLKEHELLGRST-G 216 (221)
Q Consensus 182 dL~~~i~~i~Pk~iiPV--Hg-------e~~~~~~~~~~~~~~-g 216 (221)
+|.+.++. +||.++-+ +- ...++.+..++|++. +
T Consensus 203 ~l~~~~~~-~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~ 246 (431)
T PRK15481 203 KLERALAQ-GARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQ 246 (431)
T ss_pred HHHHHHhc-CCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCC
Confidence 78777754 77765544 22 233556777788776 5
No 83
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=60.85 E-value=46 Score=27.57 Aligned_cols=130 Identities=16% Similarity=0.158 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcccHHHHHHHHHHCC--CCCCCCCCccChhhhhhc-CCCCEEEEecCCC--ccHHHHHH
Q 045468 44 IHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDG--KAPIDPSTLVKVEDIDAY-APKDLLIVTTGSQ--AEPRAALN 118 (221)
Q Consensus 44 i~Rl~~i~~~a~~~gR~~vi~~~~~~~~~~~~~~~g--~~~~~~~~~v~~~~~~~~-~~~~~vi~~~g~~--~e~~~~l~ 118 (221)
.+=...+.+.|++.|-.++...-+. .-++.+.+.| .++........++-++.. ....-+|+.||+. .|.-..+.
T Consensus 55 ~e~~~~L~~~~~~~gi~f~stpfd~-~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~stl~EI~~Av~ 133 (241)
T PF03102_consen 55 EEQHKELFEYCKELGIDFFSTPFDE-ESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMSTLEEIERAVE 133 (241)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE-SH-HHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEECCCCH-HHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCCCHHHHHHHHH
Confidence 4455678888888888777665443 3334444433 111111111122222211 1223388899973 44444444
Q ss_pred HH-hcCCCCCcccCCCCEEEE---EecCCCCcHHHHHHHHHHHH-HcCCeEEecCCceeeeecCCCHHHHHHHHHHcC
Q 045468 119 LA-SYGGSHSLKLTNEDVILY---SAKVIPGNESRVMKMLNRIS-EIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVK 191 (221)
Q Consensus 119 ~~-~~~~~~~~~~~~~~~vI~---s~~~~pg~e~~~~~~~~~l~-~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~ 191 (221)
.+ ..+ ..+.+++ |+|+.|-.+... +.+..|. ++|+ .+.+|+|...-..--+.-.+.
T Consensus 134 ~~~~~~--------~~~l~llHC~s~YP~~~e~~NL-~~i~~L~~~f~~--------~vG~SDHt~g~~~~~~AvalG 194 (241)
T PF03102_consen 134 VLREAG--------NEDLVLLHCVSSYPTPPEDVNL-RVIPTLKERFGV--------PVGYSDHTDGIEAPIAAVALG 194 (241)
T ss_dssp HHHHHC--------T--EEEEEE-SSSS--GGG--T-THHHHHHHHSTS--------EEEEEE-SSSSHHHHHHHHTT
T ss_pred HHHhcC--------CCCEEEEecCCCCCCChHHcCh-HHHHHHHHhcCC--------CEEeCCCCCCcHHHHHHHHcC
Confidence 33 122 3444443 333333333333 2334444 4564 345677776544444443333
No 84
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=60.26 E-value=84 Score=26.04 Aligned_cols=83 Identities=14% Similarity=0.168 Sum_probs=48.9
Q ss_pred CCCEEEEEecCCC-CcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCChHHHHHHHH
Q 045468 132 NEDVILYSAKVIP-GNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGELLFLKEHEL 210 (221)
Q Consensus 132 ~~~~vI~s~~~~p-g~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~~~~~~~~~ 210 (221)
+...+|+|+.... ++ .+-..+.+.|.+.|++-- .-....-|.-..|.+...-+.++-+.++-| |..-|+....-
T Consensus 81 k~~~ilvSGg~~~~~~-~Ea~~M~~yLi~~GVp~e---~Ii~e~~s~nT~en~~~a~~i~~~~~~iIV-Tq~fHm~RA~~ 155 (239)
T PRK10834 81 KVNYLLLSGDNALQSY-NEPMTMRKDLIAAGVDPS---DIVLDYAGFRTLDSIVRTRKVFDTNDFIII-TQRFHCERALF 155 (239)
T ss_pred CCCEEEEeCCCCCCCC-CHHHHHHHHHHHcCCCHH---HEEecCCCCCHHHHHHHHHHHhCCCCEEEE-CCHHHHHHHHH
Confidence 4567888887422 22 122357889999998321 001333445556666655566665534333 33337888888
Q ss_pred HHHhcCCCC
Q 045468 211 LGRSTGIRH 219 (221)
Q Consensus 211 ~~~~~g~~~ 219 (221)
+++..|++.
T Consensus 156 ia~~~Gi~~ 164 (239)
T PRK10834 156 IALHMGIQA 164 (239)
T ss_pred HHHHcCCce
Confidence 899999864
No 85
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=60.03 E-value=1.1e+02 Score=25.95 Aligned_cols=78 Identities=18% Similarity=0.132 Sum_probs=46.1
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHH-cCCCEEEEcCCC-----hHHH
Q 045468 132 NEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKL-VKPQHFLPIHGE-----LLFL 205 (221)
Q Consensus 132 ~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~-i~Pk~iiPVHge-----~~~~ 205 (221)
++|.+|+.....++.. +.......|++++..+ ...-+..+.+++...++. -+++.++.+|.+ ...+
T Consensus 73 ~~~~vi~~~~~~~~~~-----~~~~a~~~g~~~~~i~---~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~ 144 (355)
T TIGR03301 73 RDGKLLVLINGAYGER-----LAKICEYLGIPHTDLN---FSEYEPPDLNRIEEALAADPDITHVATVHHETTTGILNPL 144 (355)
T ss_pred CCCeEEEECCCchhhH-----HHHHHHHcCCceEEEe---cCCCCCCCHHHHHHHHHhCCCceEEEEEecCCcccchhHH
Confidence 5677666554333321 2344455788776211 111256678888888865 234577777743 3467
Q ss_pred HHHHHHHHhcCC
Q 045468 206 KEHELLGRSTGI 217 (221)
Q Consensus 206 ~~~~~~~~~~g~ 217 (221)
.+.++++++.|+
T Consensus 145 ~~i~~l~~~~~~ 156 (355)
T TIGR03301 145 EAIAKVARSHGA 156 (355)
T ss_pred HHHHHHHHHcCC
Confidence 778888888874
No 86
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=59.84 E-value=64 Score=28.37 Aligned_cols=77 Identities=17% Similarity=0.044 Sum_probs=44.5
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCCh--------H
Q 045468 132 NEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGEL--------L 203 (221)
Q Consensus 132 ~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~--------~ 203 (221)
+||.|+++.+..+++. ......|++++..... -...+..+.+++++.+.. +++.++-.|--+ .
T Consensus 119 ~gd~Vlv~~p~y~~~~-------~~~~~~g~~~~~~~~~-~~~~~~~d~~~l~~~~~~-~~~~v~i~~p~NPtG~~~~~~ 189 (403)
T TIGR01265 119 PGANILVPRPGFPLYD-------TRAAFSGLEVRLYDLL-PEKDWEIDLDGLEALADE-KTVAIVVINPSNPCGSVFSRD 189 (403)
T ss_pred CCCEEEEeCCCchhHH-------HHHHHcCCEEEEecCC-cccCCccCHHHHHHHhCc-CccEEEEecCCCCCCCCCCHH
Confidence 7888888876443322 2345568777621110 011234566777665532 467777776432 3
Q ss_pred HHHHHHHHHHhcCC
Q 045468 204 FLKEHELLGRSTGI 217 (221)
Q Consensus 204 ~~~~~~~~~~~~g~ 217 (221)
++.+..+++++.|+
T Consensus 190 ~~~~i~~~a~~~~~ 203 (403)
T TIGR01265 190 HLQKIAEVARKLGI 203 (403)
T ss_pred HHHHHHHHHHHCCC
Confidence 57778888888774
No 87
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=59.77 E-value=94 Score=27.42 Aligned_cols=78 Identities=12% Similarity=0.074 Sum_probs=45.1
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCC--------h
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGE--------L 202 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge--------~ 202 (221)
++||.+++..+..+++. ..+...|+++...+.. -...+.-+.++|...++. +++.++-.|-- .
T Consensus 126 ~~gd~vlv~~P~y~~~~-------~~~~~~g~~~~~i~~~-~~~~~~~d~~~l~~~~~~-~~~~i~~~~p~NPtG~~~s~ 196 (412)
T PTZ00433 126 DEGDNILVPAPGFPHYE-------TVCKAYGIEMRFYNCR-PEKDWEADLDEIRRLVDD-RTKALIMTNPSNPCGSNFSR 196 (412)
T ss_pred CCCCEEEEccCCcccHH-------HHHHHcCCEEEEEecC-ccccCcCCHHHHHHHhcc-CceEEEEeCCCCCCCcccCH
Confidence 37899988886555433 3355678877621110 011224456666655543 56766655532 3
Q ss_pred HHHHHHHHHHHhcCC
Q 045468 203 LFLKEHELLGRSTGI 217 (221)
Q Consensus 203 ~~~~~~~~~~~~~g~ 217 (221)
.++.+.+++|++.|+
T Consensus 197 ~~~~~l~~~a~~~~~ 211 (412)
T PTZ00433 197 KHVEDIIRLCEELRL 211 (412)
T ss_pred HHHHHHHHHHHHcCC
Confidence 467777888887774
No 88
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=59.63 E-value=96 Score=26.90 Aligned_cols=96 Identities=16% Similarity=0.060 Sum_probs=51.7
Q ss_pred EEEEecCCCccHHHHHHHHhcCCCCCcccCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecC-CCH
Q 045468 102 LLIVTTGSQAEPRAALNLASYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGH-GYR 180 (221)
Q Consensus 102 ~vi~~~g~~~e~~~~l~~~~~~~~~~~~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGH-A~~ 180 (221)
.++++.|.+.-+ ..+.+... ++||.|++..+..+++... ....|++++..+... -.|- .+.
T Consensus 93 ~vi~t~G~~~~l-~~~~~~~~--------~~gd~vlv~~P~y~~~~~~-------~~~~G~~v~~v~~~~--~~g~~~d~ 154 (383)
T TIGR03540 93 EVLSLIGSKEGI-AHIPLAFV--------NPGDIVLVPDPGYPVYRIG-------TLFAGGEPYEMPLKE--ENGFLPDF 154 (383)
T ss_pred eEEECCCcHHHH-HHHHHHhC--------CCCCEEEEeCCCCcchHHH-------HHhcCCEEEEEecCc--ccCCccCH
Confidence 456666764333 32322222 4889999888766665432 344687776211100 1122 345
Q ss_pred HHHHHHHHHcCCCEEEEcCCCh--------HHHHHHHHHHHhcC
Q 045468 181 GELEEVLKLVKPQHFLPIHGEL--------LFLKEHELLGRSTG 216 (221)
Q Consensus 181 ~dL~~~i~~i~Pk~iiPVHge~--------~~~~~~~~~~~~~g 216 (221)
++++..+.. +++.++-.|--+ .++.+.++++++.|
T Consensus 155 ~~l~~~~~~-~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~ 197 (383)
T TIGR03540 155 DAIPEDIAK-KAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYN 197 (383)
T ss_pred HHHHhhccc-cceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcC
Confidence 555544432 677777665332 35777778888776
No 89
>PRK04017 hypothetical protein; Provisional
Probab=59.53 E-value=72 Score=23.87 Aligned_cols=92 Identities=15% Similarity=0.215 Sum_probs=52.8
Q ss_pred ccccHHHHHHHHHHHHHc---CCeEEEEcccHHHHHHHHHHCCCCCCCCCCccChhhhhhcCCCCEEEEecCCCccHHHH
Q 045468 40 FASNIHRLGSVKAAADLT---GRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAA 116 (221)
Q Consensus 40 ~a~ni~Rl~~i~~~a~~~---gR~~vi~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~vi~~~g~~~e~~~~ 116 (221)
+..|++++.++++-.++. |..+++-|+. -.+.+.+.|. +.-++.++|..- ...
T Consensus 2 ~~~~~~~~~e~i~~L~e~s~~g~vIVVEGk~---D~~~L~~lGv-------------------~~~iI~t~g~~~--~~~ 57 (132)
T PRK04017 2 YRENYERFEEIIEELKEFSEAGAPIIVEGKR---DVESLRKLGV-------------------EGEIIKVSRTPL--AEI 57 (132)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCEEEEeCcc---HHHHHHHcCC-------------------CccEEEECCeec--chH
Confidence 345788888888887666 4558888975 2223333332 112455655421 111
Q ss_pred HHHHhcCCCCCcccCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeE
Q 045468 117 LNLASYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTI 164 (221)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v 164 (221)
...++.+ ..+.+|+.-|-.+|..- ...+...+...|+.+
T Consensus 58 ~e~ia~~--------~r~VIILTD~D~~GekI-r~~l~~~l~~~G~~v 96 (132)
T PRK04017 58 AELIASR--------GKEVIILTDFDRKGEEL-AKKLSEYLQGYGIKV 96 (132)
T ss_pred HHHHHhc--------CCeEEEEECCCcchHHH-HHHHHHHHHhCCCCc
Confidence 1233332 45677888776666443 346667787788765
No 90
>PRK02126 ribonuclease Z; Provisional
Probab=59.53 E-value=35 Score=29.62 Aligned_cols=70 Identities=13% Similarity=0.157 Sum_probs=45.6
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEe--cC-----CceeeeecCCCHHHHHHHHHHcCCCEEEEcCCChH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVM--GR-----NEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGELL 203 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~--~~-----~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~~ 203 (221)
.++..++|++-..+..+ .+..+.+... |+++.. .. .....-+||.+.++..++++..+|+.++.+|-...
T Consensus 240 ~~g~~v~y~gDT~~~~~-~~~~l~~~a~--~aDlLI~Eat~~~~~~~~a~~~gH~t~~~a~~lA~~a~vk~LvLtH~sp~ 316 (334)
T PRK02126 240 EPGQKIGYVTDIGYTEE-NLARIVELAA--GVDLLFIEAVFLDEDAEKARRKNHLTARQAGRLAREAGVKRLLPFHFSPR 316 (334)
T ss_pred CCCCEEEEECCCCCCcc-cHHHHHHHHc--CCCEEEEEcccChHHhhhcccCCCCCHHHHHHHHHHcCCCEEEEEecCcc
Confidence 35778999997654322 2223444443 444331 11 01123479999999999999999999999997644
No 91
>PRK07050 cystathionine beta-lyase; Provisional
Probab=59.25 E-value=95 Score=27.45 Aligned_cols=75 Identities=12% Similarity=0.082 Sum_probs=45.6
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEE---EcC--CChHHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFL---PIH--GELLFL 205 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~ii---PVH--ge~~~~ 205 (221)
++||.||.+....+++.. .+...+...|+++. .+.. ...++++..++. ++|.++ |.+ +...++
T Consensus 102 ~~GD~Vl~~~~~y~~~~~---~~~~~~~~~Gi~v~-----~vd~---~~~~~l~~~i~~-~tklV~le~p~Np~~~~~di 169 (394)
T PRK07050 102 KAGDDVLIPDNAYGPNRD---HGEWLARDFGITVR-----FYDP---LIGAGIADLIQP-NTRLIWLEAPGSVTMEVPDV 169 (394)
T ss_pred CCCCEEEEecCCcccHHH---HHHHHHHhcCeEEE-----EECC---CCHHHHHHhcCC-CCeEEEEECCCCCCccHhhH
Confidence 489998888865554432 12234566788775 2321 134556555431 456666 443 466788
Q ss_pred HHHHHHHHhcCC
Q 045468 206 KEHELLGRSTGI 217 (221)
Q Consensus 206 ~~~~~~~~~~g~ 217 (221)
.+.+++|++.|+
T Consensus 170 ~~I~~ia~~~gi 181 (394)
T PRK07050 170 PAITAAARARGV 181 (394)
T ss_pred HHHHHHHHHcCC
Confidence 899999999885
No 92
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=59.14 E-value=40 Score=29.68 Aligned_cols=75 Identities=13% Similarity=0.230 Sum_probs=44.9
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEE---EcC--CChHHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFL---PIH--GELLFL 205 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~ii---PVH--ge~~~~ 205 (221)
++||.+|.+....++ ....+.+.+.+.|+++.. +.. .+.+++++.++. +++.++ |.+ |.-.++
T Consensus 86 ~pGd~Vi~~~~~y~~---t~~~~~~~~~~~gi~v~~-----vd~---~d~e~l~~ai~~-~t~lV~lesP~Nptg~~~di 153 (380)
T PRK06176 86 QSGDHVLLGDDVYGG---TFRLFDKVLVKNGLSCTI-----IDT---SDLSQIKKAIKP-NTKALYLETPSNPLLKITDL 153 (380)
T ss_pred CCCCEEEEcCCChhH---HHHHHHHHHHhcCeEEEE-----cCC---CCHHHHHHhcCc-CceEEEEECCCCCCceecCH
Confidence 488998887653332 223344556778887752 211 145555544432 456666 654 345578
Q ss_pred HHHHHHHHhcCC
Q 045468 206 KEHELLGRSTGI 217 (221)
Q Consensus 206 ~~~~~~~~~~g~ 217 (221)
.+.+++|++.|+
T Consensus 154 ~~I~~la~~~gi 165 (380)
T PRK06176 154 AQCASVAKDHGL 165 (380)
T ss_pred HHHHHHHHHcCC
Confidence 888999999885
No 93
>PRK06836 aspartate aminotransferase; Provisional
Probab=59.14 E-value=96 Score=27.15 Aligned_cols=74 Identities=14% Similarity=0.040 Sum_probs=44.1
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCC--------h
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGE--------L 202 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge--------~ 202 (221)
.++|.|+.+.+..+++. ..+...|++++..+.+. -++..+.++|.+.++. +++.++-.|=- .
T Consensus 118 ~~gd~Vli~~p~~~~~~-------~~~~~~g~~v~~v~~~~--~~~~~d~~~l~~~~~~-~~~~v~~~~p~NPtG~~~~~ 187 (394)
T PRK06836 118 NPGDEVIVFAPYFVEYR-------FYVDNHGGKLVVVPTDT--DTFQPDLDALEAAITP-KTKAVIINSPNNPTGVVYSE 187 (394)
T ss_pred CCCCEEEEcCCCCccHH-------HHHHHcCCEEEEEecCC--ccCcCCHHHHHhhcCc-CceEEEEeCCCCCCCcCCCH
Confidence 37888888876444432 34566788876322111 1245667777766643 56777655522 2
Q ss_pred HHHHHHHHHHHh
Q 045468 203 LFLKEHELLGRS 214 (221)
Q Consensus 203 ~~~~~~~~~~~~ 214 (221)
.++.+.++++++
T Consensus 188 ~~~~~l~~la~~ 199 (394)
T PRK06836 188 ETLKALAALLEE 199 (394)
T ss_pred HHHHHHHHHHHH
Confidence 467778888876
No 94
>PRK05967 cystathionine beta-lyase; Provisional
Probab=59.03 E-value=73 Score=28.37 Aligned_cols=75 Identities=8% Similarity=0.002 Sum_probs=46.3
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcC-----CChHHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIH-----GELLFL 205 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVH-----ge~~~~ 205 (221)
++||.+|.+... |-....-+.+++.+.|+++. .+... ..+++++.++. ++|.++--+ +.-.++
T Consensus 101 ~~GD~Vlv~~~~---Y~~~~~l~~~~l~~~Gi~v~-----~vd~~---~~e~l~~al~~-~TklV~lesPsNP~l~v~dl 168 (395)
T PRK05967 101 SPGDHALIVDSV---YYPTRHFCDTMLKRLGVEVE-----YYDPE---IGAGIAKLMRP-NTKVVHTEAPGSNTFEMQDI 168 (395)
T ss_pred CCCCEEEEccCC---cHHHHHHHHHHHHhcCeEEE-----EeCCC---CHHHHHHhcCc-CceEEEEECCCCCCCcHHHH
Confidence 589998888653 33322234467888999875 33322 23445544431 345444432 477789
Q ss_pred HHHHHHHHhcCC
Q 045468 206 KEHELLGRSTGI 217 (221)
Q Consensus 206 ~~~~~~~~~~g~ 217 (221)
.+.+++|++.|+
T Consensus 169 ~~I~~la~~~g~ 180 (395)
T PRK05967 169 PAIAEAAHRHGA 180 (395)
T ss_pred HHHHHHHHHhCC
Confidence 999999999985
No 95
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=58.63 E-value=1.2e+02 Score=26.33 Aligned_cols=81 Identities=17% Similarity=0.069 Sum_probs=47.3
Q ss_pred cCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCC-----ChHH
Q 045468 130 LTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHG-----ELLF 204 (221)
Q Consensus 130 ~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHg-----e~~~ 204 (221)
++++|.|+.+....|++ ...+.......|++++..+ ....|..+.++|...+.. +++.++-.|- -...
T Consensus 103 ~~~gd~Vl~~~~~~~s~---~~~~~~~~~~~g~~v~~v~---~~~~~~~~~~~l~~~i~~-~t~lv~i~~~~n~tG~~~~ 175 (398)
T TIGR03392 103 LQPGDEIIVSEAEHHAN---LIPWLMVAQQTGAKVVKLP---IGADLLPDIRQLPELLTP-RTRILALGQMSNVTGGCPD 175 (398)
T ss_pred CCCCCEEEECCcchhHH---HHHHHHHHHHcCcEEEEEe---cCCCCCcCHHHHHHHhcc-CceEEEEECccccccccCC
Confidence 35788888877644432 2223344566788876322 122356667777766532 4565555453 3336
Q ss_pred HHHHHHHHHhcCC
Q 045468 205 LKEHELLGRSTGI 217 (221)
Q Consensus 205 ~~~~~~~~~~~g~ 217 (221)
+.+.++++++.|+
T Consensus 176 ~~~i~~~~~~~~~ 188 (398)
T TIGR03392 176 LARAITLAHQYGA 188 (398)
T ss_pred HHHHHHHHHHcCC
Confidence 7778888888874
No 96
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=58.61 E-value=1.2e+02 Score=26.24 Aligned_cols=72 Identities=17% Similarity=0.064 Sum_probs=45.9
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHc-----CCCEEEEcC-----C
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLV-----KPQHFLPIH-----G 200 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i-----~Pk~iiPVH-----g 200 (221)
+++|.||......|++ ...+...+...+ . .+|.+.++|.+.++.. +++.++.-| |
T Consensus 120 ~~gd~vi~~~~~~~s~-------~~~~~~~~~~~~-----~---~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG 184 (393)
T TIGR01822 120 GAEDAIISDALNHASI-------IDGVRLCKAKRY-----R---YANNDMADLEAQLKEARAAGARHRLIATDGVFSMDG 184 (393)
T ss_pred CCCCEEEEeccccHHH-------HHHHHhcCCceE-----E---eCCCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCC
Confidence 4889888876543332 222333444333 1 3579999999988863 566777544 3
Q ss_pred ChHHHHHHHHHHHhcCC
Q 045468 201 ELLFLKEHELLGRSTGI 217 (221)
Q Consensus 201 e~~~~~~~~~~~~~~g~ 217 (221)
....+.+.++++++.|+
T Consensus 185 ~~~~l~~i~~la~~~~~ 201 (393)
T TIGR01822 185 VIAPLDEICDLADKYDA 201 (393)
T ss_pred CcCCHHHHHHHHHHcCC
Confidence 33478888999998874
No 97
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=58.58 E-value=49 Score=29.07 Aligned_cols=75 Identities=15% Similarity=0.226 Sum_probs=46.2
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEE---EcC--CChHHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFL---PIH--GELLFL 205 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~ii---PVH--ge~~~~ 205 (221)
++||.||.+....+++ ...+..++.+.|+++. .+.. .+.++++..++ -+++.++ |.+ |.-.++
T Consensus 83 ~~Gd~Vl~~~~~y~~~---~~~~~~~~~~~G~~v~-----~vd~---~d~~~le~~i~-~~tklv~le~psnptg~v~dl 150 (378)
T TIGR01329 83 NNGDEIIAGDDLYGGT---DRLLTQVVPRSGVVVV-----HVDT---TDLDKVKAALG-PKTKLVLLESPTNPLQKIVDI 150 (378)
T ss_pred CCCCEEEEcCCCchHH---HHHHHHHHHHcCcEEE-----EeCC---CCHHHHHHhcC-cCceEEEEECCCCCCCeeecH
Confidence 4889988876543332 2223455677899876 2222 25566655443 2456677 533 455588
Q ss_pred HHHHHHHHhcCC
Q 045468 206 KEHELLGRSTGI 217 (221)
Q Consensus 206 ~~~~~~~~~~g~ 217 (221)
.+.+++|++.|+
T Consensus 151 ~~I~~la~~~g~ 162 (378)
T TIGR01329 151 RKISEMAHAQNA 162 (378)
T ss_pred HHHHHHHHHcCC
Confidence 899999999885
No 98
>PRK08064 cystathionine beta-lyase; Provisional
Probab=58.52 E-value=46 Score=29.36 Aligned_cols=73 Identities=22% Similarity=0.271 Sum_probs=46.3
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcC--CCEEE---EcC--CChH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVK--PQHFL---PIH--GELL 203 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~--Pk~ii---PVH--ge~~ 203 (221)
++||.++.+....+++-. .+.+.+.+.|+++. .+.. .|+..+.+.++ ++.++ |.+ |...
T Consensus 90 ~~Gd~Vlv~~~~y~~~~~---~~~~~~~~~G~~v~-----~v~~------~d~~~l~~~l~~~tklV~l~~p~NptG~~~ 155 (390)
T PRK08064 90 SKGDHVLISEDVYGGTYR---MITEVLSRFGIEHT-----FVDM------TNLEEVAQNIKPNTKLFYVETPSNPLLKVT 155 (390)
T ss_pred CCCCEEEEccCccchHHH---HHHHHHHHcCCEEE-----EECC------CCHHHHHHhcCCCceEEEEECCCCCCcEec
Confidence 478888888765444322 23345667898876 2221 14455555554 46777 654 6667
Q ss_pred HHHHHHHHHHhcCC
Q 045468 204 FLKEHELLGRSTGI 217 (221)
Q Consensus 204 ~~~~~~~~~~~~g~ 217 (221)
++.+.++++++.|+
T Consensus 156 dl~~I~~la~~~g~ 169 (390)
T PRK08064 156 DIRGVVKLAKAIGC 169 (390)
T ss_pred cHHHHHHHHHHcCC
Confidence 88888999998884
No 99
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=58.38 E-value=1.1e+02 Score=26.59 Aligned_cols=97 Identities=19% Similarity=0.108 Sum_probs=51.1
Q ss_pred EEEEecCCCccHHHHHHHHhcCCCCCcccCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecC-CCH
Q 045468 102 LLIVTTGSQAEPRAALNLASYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGH-GYR 180 (221)
Q Consensus 102 ~vi~~~g~~~e~~~~l~~~~~~~~~~~~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGH-A~~ 180 (221)
.++++.|.+.-+ +.+.+... ++||.|++..+..+++... ....|++++..+.. ...|. .+.
T Consensus 95 ~ii~t~G~~~~i-~~~~~~~~--------~~gd~Vl~~~P~y~~~~~~-------~~~~g~~~~~v~~~--~~~g~~~d~ 156 (385)
T PRK09276 95 EVISLIGSKEGI-AHIPLAFV--------NPGDVVLVPDPGYPVYKIG-------TIFAGGEPYFMPLK--EENGFLPDL 156 (385)
T ss_pred cEEEccCcHHHH-HHHHHHhC--------CCCCEEEEcCCCCcChHHH-------HHHcCCEEEEEecC--CCCCCcCCH
Confidence 356666664333 33333222 4899999988766655432 33468877621110 01122 344
Q ss_pred HHHHHHHHHcCCCEEEEcCCC--------hHHHHHHHHHHHhcCC
Q 045468 181 GELEEVLKLVKPQHFLPIHGE--------LLFLKEHELLGRSTGI 217 (221)
Q Consensus 181 ~dL~~~i~~i~Pk~iiPVHge--------~~~~~~~~~~~~~~g~ 217 (221)
+++...+.. +++.++-.+-- ..++.+.++++++.|+
T Consensus 157 ~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~ 200 (385)
T PRK09276 157 DAIPEDVAK-KAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDI 200 (385)
T ss_pred HHHHHhccc-cceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCc
Confidence 555443322 56767655432 2356777888887763
No 100
>PRK05569 flavodoxin; Provisional
Probab=57.98 E-value=65 Score=23.59 Aligned_cols=54 Identities=19% Similarity=0.270 Sum_probs=37.4
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKL 189 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~ 189 (221)
+.+..++|+++.+.+.+ ....+...+...|++++ ..+.+.|+.+.+|+++..+.
T Consensus 82 ~~K~v~~f~t~g~~~~~-~~~~~~~~l~~~g~~~~----~~~~~~~~p~~~~~~~~~~~ 135 (141)
T PRK05569 82 ENKKCILFGSYGWDNGE-FMKLWKDRMKDYGFNVI----GDLAVNESPNKEELNSAKEL 135 (141)
T ss_pred CCCEEEEEeCCCCCCCc-HHHHHHHHHHHCCCeEe----eeEEEccCCCHHHHHHHHHH
Confidence 34557788887555322 23356677888999887 25888899999999876543
No 101
>PRK09265 aminotransferase AlaT; Validated
Probab=57.96 E-value=1.2e+02 Score=26.71 Aligned_cols=78 Identities=15% Similarity=0.116 Sum_probs=44.5
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCC--------h
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGE--------L 202 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge--------~ 202 (221)
++||.|+.+.+..+++.. .+...|+.++....+. ...+..+.+++...++ -+++.++-.|-- .
T Consensus 117 ~~gd~Vlv~~p~y~~~~~-------~~~~~g~~~v~~~~~~-~~~~~~d~~~l~~~~~-~~~~~v~l~~P~NPtG~~~~~ 187 (404)
T PRK09265 117 NNGDEVLVPAPDYPLWTA-------AVSLSGGKPVHYLCDE-EAGWFPDLDDIRSKIT-PRTKAIVIINPNNPTGAVYSK 187 (404)
T ss_pred CCCCEEEEeCCCCcChHH-------HHHHcCCEEEEEeccc-ccCCCCCHHHHHHhcc-ccceEEEEECCCCCCCcCCCH
Confidence 478998888765544332 2334576665211000 1134466777776653 256777766632 3
Q ss_pred HHHHHHHHHHHhcCC
Q 045468 203 LFLKEHELLGRSTGI 217 (221)
Q Consensus 203 ~~~~~~~~~~~~~g~ 217 (221)
.++.+.++++++.|+
T Consensus 188 ~~~~~i~~~a~~~~~ 202 (404)
T PRK09265 188 ELLEEIVEIARQHNL 202 (404)
T ss_pred HHHHHHHHHHHHCCC
Confidence 357788888888774
No 102
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=57.86 E-value=1.1e+02 Score=26.21 Aligned_cols=79 Identities=18% Similarity=0.092 Sum_probs=48.7
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHc------CCCEEEEcCCCh--
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLV------KPQHFLPIHGEL-- 202 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i------~Pk~iiPVHge~-- 202 (221)
+++|.++.+....++ . ...+...|++++..+.+. ...++.+.++|...++.. +|+.++-.|..+
T Consensus 81 ~~gd~Vl~~~~~~~~---~----~~~~~~~g~~~~~v~~~~-~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~t 152 (361)
T cd06452 81 EKGDWVVVDGLAHYT---S----YVAAERAGLNVREVPNTG-HPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNY 152 (361)
T ss_pred CCCCEEEEcCCcchH---H----HHHHHhcCCEEEEEecCC-CCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCC
Confidence 478888887543222 1 123566788876311100 112378899998888642 577788777544
Q ss_pred ---HHHHHHHHHHHhcCC
Q 045468 203 ---LFLKEHELLGRSTGI 217 (221)
Q Consensus 203 ---~~~~~~~~~~~~~g~ 217 (221)
.++.+.++++++.|+
T Consensus 153 G~~~~~~~i~~~~~~~~~ 170 (361)
T cd06452 153 GNLHDAKKIAKVCHEYGV 170 (361)
T ss_pred eeeccHHHHHHHHHHcCC
Confidence 367788888888774
No 103
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=57.26 E-value=23 Score=20.15 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=22.0
Q ss_pred HHHHHHHHHcCCeEEecCCceeeeecC-CCHHHHHHHHHH
Q 045468 151 MKMLNRISEIGSTIVMGRNEGLHTSGH-GYRGELEEVLKL 189 (221)
Q Consensus 151 ~~~~~~l~~~g~~v~~~~~~~~h~SGH-A~~~dL~~~i~~ 189 (221)
..+.+||...|+.+ +-. ..+++|...++.
T Consensus 7 ~~L~~wL~~~gi~~----------~~~~~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 7 SDLKSWLKSHGIPV----------PKSAKTRDELLKLAKK 36 (38)
T ss_pred HHHHHHHHHcCCCC----------CCCCCCHHHHHHHHHH
Confidence 46789999999754 223 599999998864
No 104
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=57.05 E-value=41 Score=29.79 Aligned_cols=75 Identities=9% Similarity=0.110 Sum_probs=46.5
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEE---EcC--CChHHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFL---PIH--GELLFL 205 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~ii---PVH--ge~~~~ 205 (221)
++||.|+.+....+++.. .+...+.+.|+++. .+. +.+.++++..+. =++|.++ |.+ |.-.++
T Consensus 102 ~~Gd~Vl~~~~~y~~~~~---~~~~~~~~~G~~v~-----~vd---~~d~e~l~~ai~-~~tklV~lesp~NptG~v~dl 169 (398)
T PRK07504 102 KAGDHVVAARALFGSCRY---VVETLLPRYGIEST-----LVD---GLDLDNWEKAVR-PNTKVFFLESPTNPTLEVIDI 169 (398)
T ss_pred CCCCEEEEcCCchhHHHH---HHHHHHhhcCeEEE-----EEC---CCCHHHHHHhcC-cCceEEEEECCCCCCcEecCH
Confidence 488988887654333322 22344566788775 232 345555554442 1456777 766 666678
Q ss_pred HHHHHHHHhcCC
Q 045468 206 KEHELLGRSTGI 217 (221)
Q Consensus 206 ~~~~~~~~~~g~ 217 (221)
.+.++++++.|+
T Consensus 170 ~~I~~la~~~gi 181 (398)
T PRK07504 170 AAVAKIANQAGA 181 (398)
T ss_pred HHHHHHHHHcCC
Confidence 889999998884
No 105
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=57.03 E-value=1e+02 Score=27.32 Aligned_cols=75 Identities=9% Similarity=0.122 Sum_probs=44.2
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEE---Ec--CCChHHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFL---PI--HGELLFL 205 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~ii---PV--Hge~~~~ 205 (221)
.+||.||.+....+++ ...+.+.+...|+++. .+ ...+.+++.+.++. +++.++ |. .|...++
T Consensus 101 ~~GD~Vi~~~~~y~~~---~~~~~~~~~~~Gi~v~-----~v---d~~d~e~l~~~i~~-~tklV~ie~p~NPtg~v~dl 168 (398)
T PRK08249 101 KPGDRVVSIKDTYGGT---NKIFTEFLPRMGVDVT-----LC---ETGDHEQIEAEIAK-GCDLLYLETPTNPTLKIVDI 168 (398)
T ss_pred CCCCEEEEcCCchHHH---HHHHHHHHhhCCeEEE-----Ec---CCCCHHHHHHhcCC-CCeEEEEECCCCCCCccCCH
Confidence 4789888877533332 2223345667888775 22 23566666555432 445554 33 2455678
Q ss_pred HHHHHHHHhcCC
Q 045468 206 KEHELLGRSTGI 217 (221)
Q Consensus 206 ~~~~~~~~~~g~ 217 (221)
.+.+++|++.|+
T Consensus 169 ~~I~~la~~~gi 180 (398)
T PRK08249 169 ERLAAAAKKVGA 180 (398)
T ss_pred HHHHHHHHHcCC
Confidence 888999999885
No 106
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=56.90 E-value=1.1e+02 Score=27.52 Aligned_cols=75 Identities=9% Similarity=0.151 Sum_probs=46.3
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcC-----CChHHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIH-----GELLFL 205 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVH-----ge~~~~ 205 (221)
++||.||.+.....|+ ...+...+.+.|+++. .+.. .+.+++++.++. +++.++..| |...++
T Consensus 100 ~pGd~VIv~~~~y~~t---~~~~~~~~~~~G~~v~-----~vd~---~d~~~l~~ai~~-~tklV~vesp~NptG~v~dl 167 (427)
T PRK05994 100 QPGDEFIAARKLYGGS---INQFGHAFKSFGWQVR-----WADA---DDPASFERAITP-RTKAIFIESIANPGGTVTDI 167 (427)
T ss_pred CCCCEEEEecCcchhH---HHHHHHHHHhcCcEEE-----EECC---CCHHHHHHhcCc-CCeEEEEECCCCCCCeecCH
Confidence 4889988877543333 2234455677898876 2221 255666655532 456566533 555678
Q ss_pred HHHHHHHHhcCC
Q 045468 206 KEHELLGRSTGI 217 (221)
Q Consensus 206 ~~~~~~~~~~g~ 217 (221)
.+.++++++.|+
T Consensus 168 ~~I~~la~~~gi 179 (427)
T PRK05994 168 AAIAEVAHRAGL 179 (427)
T ss_pred HHHHHHHHHcCC
Confidence 888999999885
No 107
>PRK07671 cystathionine beta-lyase; Provisional
Probab=56.77 E-value=43 Score=29.45 Aligned_cols=73 Identities=16% Similarity=0.291 Sum_probs=44.7
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcC--CCEEE---EcC--CChH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVK--PQHFL---PIH--GELL 203 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~--Pk~ii---PVH--ge~~ 203 (221)
++||.+|.+.+..++ .+..+.+.+.+.|+++. .+. .. |+..+.+.++ ++.++ |.+ |.-.
T Consensus 86 ~~Gd~Viv~~~~y~~---~~~~~~~~~~~~G~~v~-----~v~---~~---d~~~l~~ai~~~tklV~le~P~NPtg~~~ 151 (377)
T PRK07671 86 SSGDHVILTDDVYGG---TYRVMTKVLNRFGIEHT-----FVD---TS---NLEEVEEAIRPNTKAIYVETPTNPLLKIT 151 (377)
T ss_pred CCCCEEEECCCccch---HHHHHHHHHhcCCeEEE-----EEC---CC---CHHHHHHhcCCCCeEEEEECCCCCCCccc
Confidence 478998887764332 23334456677898776 221 12 4444555554 45666 554 3455
Q ss_pred HHHHHHHHHHhcCC
Q 045468 204 FLKEHELLGRSTGI 217 (221)
Q Consensus 204 ~~~~~~~~~~~~g~ 217 (221)
++.+.++++++.|+
T Consensus 152 dl~~I~~la~~~g~ 165 (377)
T PRK07671 152 DIKKISTIAKEKGL 165 (377)
T ss_pred CHHHHHHHHHHcCC
Confidence 78888899998884
No 108
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=56.50 E-value=69 Score=28.69 Aligned_cols=70 Identities=14% Similarity=0.041 Sum_probs=50.0
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeee--cCCCHHHHHHHHHH-cCCCEEEEcCCChHHHHH
Q 045468 132 NEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTS--GHGYRGELEEVLKL-VKPQHFLPIHGELLFLKE 207 (221)
Q Consensus 132 ~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~S--GHA~~~dL~~~i~~-i~Pk~iiPVHge~~~~~~ 207 (221)
.++.+.+|+...|-.-+....++..+.+.|+.+. ...+| |+.+++++.++++. +.| ..|=+|+-.++.+.
T Consensus 73 ~~ggVtisGGGepl~~~~l~eLl~~lk~~gi~ta-----I~~TnG~~l~~~e~~~~L~~~gld~-v~iSvka~dpe~h~ 145 (404)
T TIGR03278 73 RDTKVTISGGGDVSCYPELEELTKGLSDLGLPIH-----LGYTSGKGFDDPEIAEFLIDNGVRE-VSFTVFATDPELRR 145 (404)
T ss_pred CCCEEEEECCcccccCHHHHHHHHHHHhCCCCEE-----EeCCCCcccCCHHHHHHHHHcCCCE-EEEecccCCHHHHH
Confidence 4678888887666433455677888888888654 12366 68899999998887 664 77888887666554
No 109
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=56.11 E-value=1.3e+02 Score=26.76 Aligned_cols=75 Identities=11% Similarity=0.092 Sum_probs=42.7
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCCh-----HHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGEL-----LFL 205 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~-----~~~ 205 (221)
++||.+|.+....+| -...+...+...|+++. .+. +.+.++++..+.. +++.++.-+--+ .++
T Consensus 94 ~~Gd~Vl~~~~~y~~---t~~~~~~~~~~~G~~v~-----~v~---~~d~~~l~~~l~~-~t~~V~le~p~NPtg~v~dl 161 (418)
T TIGR01326 94 QAGDNIVSSSYLYGG---TYNLFKHTLKRLGIEVR-----FVD---PDDPEEFEKAIDE-NTKAVFAETIGNPAINVPDI 161 (418)
T ss_pred CCCCEEEEECCCcHH---HHHHHHHHHHHcCcEEE-----EEC---CCCHHHHHHhcCc-CCeEEEEECCCCCCCeecCH
Confidence 378888887653333 22234456677898876 232 2255555554421 345555433222 367
Q ss_pred HHHHHHHHhcCC
Q 045468 206 KEHELLGRSTGI 217 (221)
Q Consensus 206 ~~~~~~~~~~g~ 217 (221)
.+.++++++.|+
T Consensus 162 ~~I~~la~~~~i 173 (418)
T TIGR01326 162 EAIAEVAHAHGV 173 (418)
T ss_pred HHHHHHHHHcCC
Confidence 888889998874
No 110
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=55.81 E-value=30 Score=26.82 Aligned_cols=82 Identities=9% Similarity=0.031 Sum_probs=47.5
Q ss_pred EEecCCCccHHHHHHHH-hcCCCCCcccCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHH
Q 045468 104 IVTTGSQAEPRAALNLA-SYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGE 182 (221)
Q Consensus 104 i~~~g~~~e~~~~l~~~-~~~~~~~~~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~d 182 (221)
++++|..|.....+.+. +.. -...+|+.+....+ ........+.+...|.++. +..---.++++
T Consensus 3 ylitGG~gglg~~la~~La~~--------~~~~~il~~r~~~~-~~~~~~~i~~l~~~g~~v~------~~~~Dv~d~~~ 67 (181)
T PF08659_consen 3 YLITGGLGGLGQSLARWLAER--------GARRLILLGRSGAP-SAEAEAAIRELESAGARVE------YVQCDVTDPEA 67 (181)
T ss_dssp EEEETTTSHHHHHHHHHHHHT--------T-SEEEEEESSGGG-STTHHHHHHHHHHTT-EEE------EEE--TTSHHH
T ss_pred EEEECCccHHHHHHHHHHHHc--------CCCEEEEeccCCCc-cHHHHHHHHHHHhCCCcee------eeccCccCHHH
Confidence 45667777776666543 332 23456666654111 1122357788888899875 44445688999
Q ss_pred HHHHHHHcC---CCEEEEcCC
Q 045468 183 LEEVLKLVK---PQHFLPIHG 200 (221)
Q Consensus 183 L~~~i~~i~---Pk~iiPVHg 200 (221)
+..++..+. |+.---||.
T Consensus 68 v~~~~~~~~~~~~~i~gVih~ 88 (181)
T PF08659_consen 68 VAAALAQLRQRFGPIDGVIHA 88 (181)
T ss_dssp HHHHHHTSHTTSS-EEEEEE-
T ss_pred HHHHHHHHHhccCCcceeeee
Confidence 999999986 444444554
No 111
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=55.79 E-value=1.2e+02 Score=25.92 Aligned_cols=100 Identities=14% Similarity=0.094 Sum_probs=54.9
Q ss_pred EEEEecCCCccHHHHHHHHhcCCCCCcccCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecC-CCH
Q 045468 102 LLIVTTGSQAEPRAALNLASYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGH-GYR 180 (221)
Q Consensus 102 ~vi~~~g~~~e~~~~l~~~~~~~~~~~~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGH-A~~ 180 (221)
-++++.|++.-+.. +....-+. =+++|.|++..+..+++... ....|++++..+.. +--|- .+.
T Consensus 62 ~Iiit~Gs~~ai~~-~~~~~~~~-----g~~~d~Vl~~~p~y~~~~~~-------~~~~g~~~~~v~~~--~~~~~~~d~ 126 (350)
T TIGR03537 62 QVLPSAGSKEAIFH-FPLVFIDP-----EEDRRRVIFGTPGYPVYERG-------ALFAGGEPTAVKLK--KEDGFLLRL 126 (350)
T ss_pred cEEEcCChHHHHHH-HHHHHcCC-----CCCCceEEEcCCCCcchHHH-------HHhcCCEEEEcccC--cccCCccCH
Confidence 36777777543333 22222220 01236888887766655543 34578877632110 11122 467
Q ss_pred HHHHHHHHHcCCCEEEEcCC--------ChHHHHHHHHHHHhcCC
Q 045468 181 GELEEVLKLVKPQHFLPIHG--------ELLFLKEHELLGRSTGI 217 (221)
Q Consensus 181 ~dL~~~i~~i~Pk~iiPVHg--------e~~~~~~~~~~~~~~g~ 217 (221)
++++..++. +++.++-.+- ...++.+.+++|++.|+
T Consensus 127 ~~l~~~~~~-~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~ 170 (350)
T TIGR03537 127 EKVEKSILE-ETKIVWINYPHNPTGATAPRSYLKETIAMCREHGI 170 (350)
T ss_pred HHHHHhhhh-ccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCc
Confidence 777776654 6777773332 23358888888888774
No 112
>PRK07682 hypothetical protein; Validated
Probab=55.09 E-value=1e+02 Score=26.64 Aligned_cols=78 Identities=12% Similarity=0.035 Sum_probs=42.1
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCC--------h
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGE--------L 202 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge--------~ 202 (221)
++||.|+...+..+++. ..+...|.+++..+... ...+..+.++|...+.. +++.++-.+-- .
T Consensus 103 ~~gd~vl~~~p~y~~~~-------~~~~~~g~~~~~~~~~~-~~~~~~d~~~l~~~~~~-~~~~v~~~~p~NPtG~~~s~ 173 (378)
T PRK07682 103 NPGDEVLIVEPSFVSYA-------PLVTLAGGVPVPVATTL-ENEFKVQPAQIEAAITA-KTKAILLCSPNNPTGAVLNK 173 (378)
T ss_pred CCCCEEEEeCCCchhhH-------HHHHHcCCEEEEeecCC-ccCCCCCHHHHHhhcCc-ccEEEEEECCCCCcCcCcCH
Confidence 37899988876544432 33444677665211100 01234566777665532 45656532211 2
Q ss_pred HHHHHHHHHHHhcCC
Q 045468 203 LFLKEHELLGRSTGI 217 (221)
Q Consensus 203 ~~~~~~~~~~~~~g~ 217 (221)
.++.+.++++++.|+
T Consensus 174 ~~~~~l~~~~~~~~~ 188 (378)
T PRK07682 174 SELEEIAVIVEKHDL 188 (378)
T ss_pred HHHHHHHHHHHHcCc
Confidence 357777888887763
No 113
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=54.70 E-value=33 Score=30.73 Aligned_cols=52 Identities=8% Similarity=0.154 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEecccc-HHHHHHHHHHHHHcCCeEEEEccc
Q 045468 15 TSESVVKDALMRHVSAAKGRVITTQFASN-IHRLGSVKAAADLTGRKLVFVGMS 67 (221)
Q Consensus 15 ~sE~~v~~~i~~~~~~~~g~viv~~~a~n-i~Rl~~i~~~a~~~gR~~vi~~~~ 67 (221)
..+..+.+.+.+.+.+. +-++.+-|+.- +.-.|.++++|++.|+++.++.+.
T Consensus 128 ~~~~~ll~~~~~~l~~~-~~vVLSDY~KG~L~~~q~~I~~ar~~~~pVLvDPKg 180 (467)
T COG2870 128 EDENKLLEKIKNALKSF-DALVLSDYAKGVLTNVQKMIDLAREAGIPVLVDPKG 180 (467)
T ss_pred hhHHHHHHHHHHHhhcC-CEEEEeccccccchhHHHHHHHHHHcCCcEEECCCC
Confidence 34566778888877664 56777777732 223799999999999999998544
No 114
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=54.63 E-value=1e+02 Score=25.59 Aligned_cols=82 Identities=21% Similarity=0.216 Sum_probs=56.6
Q ss_pred CCEEEEEecCCCCc-HHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcC---CC--EEEEcCC--ChHH
Q 045468 133 EDVILYSAKVIPGN-ESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVK---PQ--HFLPIHG--ELLF 204 (221)
Q Consensus 133 ~~~vI~s~~~~pg~-e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~---Pk--~iiPVHg--e~~~ 204 (221)
|-.+.|+....+.. ......+...+...|++.+. ...+.|.+.|+++..+++.++ |. .-|=+|+ ..-.
T Consensus 127 G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~----l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~Gl 202 (268)
T cd07940 127 GLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTIN----IPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGL 202 (268)
T ss_pred CCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEE----ECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcch
Confidence 33455555433333 34457788888889987763 577999999999999999984 32 4444666 4556
Q ss_pred HHHHHHHHHhcCCC
Q 045468 205 LKEHELLGRSTGIR 218 (221)
Q Consensus 205 ~~~~~~~~~~~g~~ 218 (221)
..+++-.|.+.|+.
T Consensus 203 A~An~laAi~aG~~ 216 (268)
T cd07940 203 AVANSLAAVEAGAR 216 (268)
T ss_pred HHHHHHHHHHhCCC
Confidence 66677777788864
No 115
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=54.50 E-value=14 Score=31.01 Aligned_cols=64 Identities=16% Similarity=0.176 Sum_probs=40.5
Q ss_pred CCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecC--Cc---eeeeecCCCHHHHHHHHHHcCCCEEEEcCCC
Q 045468 133 EDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGR--NE---GLHTSGHGYRGELEEVLKLVKPQHFLPIHGE 201 (221)
Q Consensus 133 ~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~--~~---~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge 201 (221)
+..++|++-..+ -. .+.+++...++=++.+. +. .....||.+.++..++++..+++.+++.|=.
T Consensus 200 g~~i~y~gDt~~--~~---~~~~~~~~~dlLi~E~~~~~~~~~~~~~~~H~t~~~a~~~~~~~~~k~lvltH~s 268 (299)
T TIGR02651 200 GRKIAYTGDTRP--CE---EVIEFAKNADLLIHEATFLDEDKKLAKEYGHSTAAQAAEIAKEANVKRLILTHIS 268 (299)
T ss_pred CcEEEEecCCCC--hH---HHHHHHcCCCEEEEECCCCchhHHHHhhcCCCCHHHHHHHHHHcCCCEEEEEecc
Confidence 457888876533 21 33444443333222111 10 1124799999999999999999999999954
No 116
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=54.33 E-value=11 Score=31.48 Aligned_cols=33 Identities=24% Similarity=0.203 Sum_probs=28.9
Q ss_pred eeeeecCCCHHHHHHHHHHcCCCEEEEcCCChH
Q 045468 171 GLHTSGHGYRGELEEVLKLVKPQHFLPIHGELL 203 (221)
Q Consensus 171 ~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~~ 203 (221)
.-|.|+|-..++..++++..+||.++-.|=.+.
T Consensus 206 ~gh~~~h~~~~~a~~~~~~~~~~rivLtHls~~ 238 (269)
T COG1235 206 PGHLSNHLSAEEALELIEKLKPKRLVLTHLSHK 238 (269)
T ss_pred cCCCCCchhHHHHHHHHHhCCcceEEEEecCCC
Confidence 368999999999999999999998888886544
No 117
>PRK08363 alanine aminotransferase; Validated
Probab=54.22 E-value=68 Score=28.08 Aligned_cols=78 Identities=15% Similarity=0.052 Sum_probs=43.5
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCC--------h
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGE--------L 202 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge--------~ 202 (221)
+++|.|+...+..+++.. .....|..++.... .-.-..+.+.++|.+.+.. +++.++-.|-- .
T Consensus 115 ~~gd~Vl~~~p~y~~~~~-------~~~~~g~~~v~~~~-~~~~~~~~d~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~ 185 (398)
T PRK08363 115 DPGDEILIPGPSYPPYTG-------LVKFYGGVPVEYRT-IEEEGWQPDIDDIRKKITE-KTKAIAVINPNNPTGALYEK 185 (398)
T ss_pred CCCCEEEEcCCCCcchHH-------HHHHcCCEEEEecc-ccccCCcCCHHHHHhhCCc-ceEEEEEECCCCCCCcCcCH
Confidence 488998888765555433 33446765542100 0001234566666655432 45666666632 2
Q ss_pred HHHHHHHHHHHhcCC
Q 045468 203 LFLKEHELLGRSTGI 217 (221)
Q Consensus 203 ~~~~~~~~~~~~~g~ 217 (221)
.++.+.++++++.|+
T Consensus 186 ~~~~~l~~~a~~~~~ 200 (398)
T PRK08363 186 KTLKEILDIAGEHDL 200 (398)
T ss_pred HHHHHHHHHHHHcCe
Confidence 357778888887774
No 118
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=54.09 E-value=31 Score=30.38 Aligned_cols=83 Identities=16% Similarity=0.020 Sum_probs=49.7
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCChH---HHHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGELL---FLKE 207 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~~---~~~~ 207 (221)
++||.|+.+....+++-..... ..+...|++++..+. -.-.++-+.++|.+.++.-+|+.++..++.++ ++.+
T Consensus 109 ~~gd~Vl~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~--~~~~~~~d~~~l~~~i~~~~~k~v~~~~~~~~~~~~~~~ 184 (416)
T PRK00011 109 KPGDTILGMDLAHGGHLTHGSP--VNFSGKLYNVVSYGV--DEETGLIDYDEVEKLALEHKPKLIIAGASAYSRPIDFKR 184 (416)
T ss_pred CCCCEEEEeccccCCccccccc--cccccceeeEeecCc--CcccCCcCHHHHHHHHHhcCCCEEEECCCcCCCccCHHH
Confidence 4889988887654443211100 011233455542111 11248899999999997668898887665544 4567
Q ss_pred HHHHHHhcCC
Q 045468 208 HELLGRSTGI 217 (221)
Q Consensus 208 ~~~~~~~~g~ 217 (221)
.++++++.|+
T Consensus 185 I~~la~~~~~ 194 (416)
T PRK00011 185 FREIADEVGA 194 (416)
T ss_pred HHHHHHHcCC
Confidence 7778888773
No 119
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=54.05 E-value=98 Score=27.12 Aligned_cols=75 Identities=16% Similarity=0.176 Sum_probs=44.4
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEE---Ec--CCChHHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFL---PI--HGELLFL 205 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~ii---PV--Hge~~~~ 205 (221)
+++|.++.+....+++ ...+.+.+...|+++. .+.. .+.+++.+.++. +++.++ |. .|...++
T Consensus 91 ~~Gd~Vl~~~~~~~~t---~~~~~~~~~~~g~~v~-----~v~~---~d~~~l~~~i~~-~tklV~le~p~np~g~~~dl 158 (380)
T TIGR01325 91 QAGDHVVASRSLFGST---VGFISEILPRFGIEVS-----FVDP---TDLNAWEAAVKP-NTKLVFVETPSNPLGELVDI 158 (380)
T ss_pred CCCCEEEEecCCcchH---HHHHHHHHHHhCCEEE-----EECC---CCHHHHHHhcCC-CceEEEEECCCCCCCeeeCH
Confidence 3788888766432222 2223356677888775 2221 145555444322 456777 54 3666788
Q ss_pred HHHHHHHHhcCC
Q 045468 206 KEHELLGRSTGI 217 (221)
Q Consensus 206 ~~~~~~~~~~g~ 217 (221)
.+.++++++.|+
T Consensus 159 ~~I~~la~~~gi 170 (380)
T TIGR01325 159 AALAELAHAIGA 170 (380)
T ss_pred HHHHHHHHHcCC
Confidence 889999998885
No 120
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=53.96 E-value=1.1e+02 Score=26.90 Aligned_cols=78 Identities=13% Similarity=0.009 Sum_probs=43.8
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCChH-------
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGELL------- 203 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~~------- 203 (221)
+++|.|++..+..+.+ ...+...|++++..+.. ....+..+.++|...++. +++.++-.+--+|
T Consensus 117 ~~gd~v~i~~P~y~~~-------~~~~~~~g~~v~~~~~~-~~~~~~~d~~~l~~~~~~-~~~~v~~~~p~NPtG~~~~~ 187 (401)
T TIGR01264 117 NAGQNILVPRPGFPLY-------ETLAESMGIEVKLYNLL-PDKSWEIDLKQLESLIDE-KTAALIVNNPSNPCGSVFSR 187 (401)
T ss_pred CCCCEEEEeCCCChhH-------HHHHHHcCCEEEEeecC-CccCCCCCHHHHHHHhcc-CceEEEEcCCCCCCCCCCCH
Confidence 3788888876533322 24456678877621110 011334667777665543 4566554444332
Q ss_pred -HHHHHHHHHHhcCC
Q 045468 204 -FLKEHELLGRSTGI 217 (221)
Q Consensus 204 -~~~~~~~~~~~~g~ 217 (221)
++.+.++++++.|+
T Consensus 188 ~~~~~l~~~a~~~~~ 202 (401)
T TIGR01264 188 QHLEEILAVAERQCL 202 (401)
T ss_pred HHHHHHHHHHHHCCC
Confidence 57788888888774
No 121
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=53.82 E-value=41 Score=29.65 Aligned_cols=75 Identities=9% Similarity=0.097 Sum_probs=44.0
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEE---EcC--CChHHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFL---PIH--GELLFL 205 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~ii---PVH--ge~~~~ 205 (221)
+++|.+|.+.+..++ ....+...+.+.|+++. .... .+.++|++.++. ++|.++ |.+ |...++
T Consensus 98 ~~Gd~Vl~~~~~y~~---t~~~~~~~~~~~gi~~~-----~~d~---~d~e~l~~~i~~-~tklV~ie~p~NPtg~~~dl 165 (388)
T PRK07811 98 RPGDHIVIPNDAYGG---TFRLIDKVFTRWGVEYT-----PVDL---SDLDAVRAAITP-RTKLIWVETPTNPLLSITDI 165 (388)
T ss_pred CCCCEEEEcCCCchH---HHHHHHHhCcCCCeEEE-----EeCC---CCHHHHHHhcCc-CCeEEEEECCCCCcceecCH
Confidence 488988887653333 22233344555677665 2211 355555555433 456564 443 556688
Q ss_pred HHHHHHHHhcCC
Q 045468 206 KEHELLGRSTGI 217 (221)
Q Consensus 206 ~~~~~~~~~~g~ 217 (221)
.+.++++++.|+
T Consensus 166 ~~I~~la~~~gi 177 (388)
T PRK07811 166 AALAELAHDAGA 177 (388)
T ss_pred HHHHHHHHHcCC
Confidence 888999998884
No 122
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=53.82 E-value=1.5e+02 Score=27.27 Aligned_cols=94 Identities=11% Similarity=0.073 Sum_probs=53.5
Q ss_pred EEEecCCCccHHHHHHHHhcCCCCCcccCCCCEEEEEecCCCCcHHHHHHHHHHHH-HcCCeEEecCCceeee----ecC
Q 045468 103 LIVTTGSQAEPRAALNLASYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRIS-EIGSTIVMGRNEGLHT----SGH 177 (221)
Q Consensus 103 vi~~~g~~~e~~~~l~~~~~~~~~~~~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~-~~g~~v~~~~~~~~h~----SGH 177 (221)
++++.|.+. .++.+..... ++||.|++..+..+++... +. ..|++++ .+.+ ...
T Consensus 122 Ivit~Ga~~-al~~l~~~l~--------~pGD~Vlv~~P~Y~~~~~~-------~~~~~G~~vv-----~v~~~~~~~~~ 180 (496)
T PLN02376 122 VVMSGGATG-ANETIMFCLA--------DPGDVFLIPSPYYAAFDRD-------LRWRTGVEII-----PVPCSSSDNFK 180 (496)
T ss_pred EEEccchHH-HHHHHHHHhC--------CCCCEEEECCCCccchHHH-------HHhhCCCEEE-----EEeCCCCccCc
Confidence 566666633 3333333222 3899999888777776542 23 4688877 3332 123
Q ss_pred CCHHHHHHHHHH-----cCCCEEEEcCCC--------hHHHHHHHHHHHhcCC
Q 045468 178 GYRGELEEVLKL-----VKPQHFLPIHGE--------LLFLKEHELLGRSTGI 217 (221)
Q Consensus 178 A~~~dL~~~i~~-----i~Pk~iiPVHge--------~~~~~~~~~~~~~~g~ 217 (221)
.+.+.+...+.. .++|.++-..=- ..++.+.++++++.|+
T Consensus 181 ~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i 233 (496)
T PLN02376 181 LTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNI 233 (496)
T ss_pred CCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCC
Confidence 456666554332 367755543322 2367778888887774
No 123
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=53.73 E-value=23 Score=33.70 Aligned_cols=47 Identities=15% Similarity=0.285 Sum_probs=39.1
Q ss_pred ceeeeecCCCHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHhcC
Q 045468 170 EGLHTSGHGYRGELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTG 216 (221)
Q Consensus 170 ~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~~~~~~~~~~~~~~g 216 (221)
+.+..=|-.+.+.+++++..++|+.+|-|||-..+...+++.-...|
T Consensus 540 ~~iDyeGisDgrSik~ii~ql~Pr~lIlvh~s~e~~r~~~~~c~~l~ 586 (764)
T KOG1135|consen 540 EKIDYEGISDGRSIKKIIAQLSPRKLILVHGSAEDTRDLKHTCASLG 586 (764)
T ss_pred EEeeeeccccchhHHHHHhccCccEEEEecCCchhhHHHHHHHHhcC
Confidence 35667788899999999999999999999998877777777655554
No 124
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.41 E-value=92 Score=25.89 Aligned_cols=54 Identities=15% Similarity=0.124 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEe-----ccccHHHHHHHHHHHHHcCCeEEEEcccH
Q 045468 14 TTSESVVKDALMRHVSAAKGRVITTQ-----FASNIHRLGSVKAAADLTGRKLVFVGMSL 68 (221)
Q Consensus 14 ~~sE~~v~~~i~~~~~~~~g~viv~~-----~a~ni~Rl~~i~~~a~~~gR~~vi~~~~~ 68 (221)
..+..++.+.+...+.+.+..+-++- |.+|-+=++.+++..++.|. +++++.+.
T Consensus 102 ~~s~~e~~~rl~~a~~~v~~~~GlnNhmGs~~tsn~~aM~~~m~~Lk~r~l-~flDs~T~ 160 (250)
T COG2861 102 GMSAEEILRRLRKAMNKVPDAVGLNNHMGSRFTSNEDAMEKLMEALKERGL-YFLDSGTI 160 (250)
T ss_pred CCCHHHHHHHHHHHHhhCccceeehhhhhhhhcCcHHHHHHHHHHHHHCCe-EEEccccc
Confidence 46788999999999988777777754 67899999999999999887 77775544
No 125
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=53.39 E-value=1.1e+02 Score=28.12 Aligned_cols=78 Identities=13% Similarity=0.116 Sum_probs=44.7
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCC--------h
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGE--------L 202 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge--------~ 202 (221)
++||.|++..+..+.+... ....|++++...... .....-+.++|+..+. -+++.++-++-- .
T Consensus 230 ~~Gd~Vli~~P~y~~y~~~-------~~~~g~~~v~~~~~~-~~~~~~d~~~l~~~~~-~~~k~i~i~nP~NPTG~v~~~ 300 (517)
T PRK13355 230 DDGDEVLIPSPDYPLWTAC-------VNLAGGTAVHYRCDE-QSEWYPDIDDIRSKIT-SRTKAIVIINPNNPTGALYPR 300 (517)
T ss_pred CCCCEEEEcCCCCcCHHHH-------HHHCCCEEEEeecCc-ccCCCCCHHHHHHhcC-cCceEEEEECCCCCCCcCcCH
Confidence 4899999988766665542 234577765211000 0112355666665442 145667666622 3
Q ss_pred HHHHHHHHHHHhcCC
Q 045468 203 LFLKEHELLGRSTGI 217 (221)
Q Consensus 203 ~~~~~~~~~~~~~g~ 217 (221)
.++.+.+++|++.|+
T Consensus 301 ~~l~~i~~~a~~~~~ 315 (517)
T PRK13355 301 EVLQQIVDIAREHQL 315 (517)
T ss_pred HHHHHHHHHHHHcCc
Confidence 367888888888763
No 126
>PRK08361 aspartate aminotransferase; Provisional
Probab=53.35 E-value=1.3e+02 Score=26.24 Aligned_cols=75 Identities=8% Similarity=-0.048 Sum_probs=43.0
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeee--cCCCHHHHHHHHHHcCCCEEEEcCCCh------
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTS--GHGYRGELEEVLKLVKPQHFLPIHGEL------ 202 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~S--GHA~~~dL~~~i~~i~Pk~iiPVHge~------ 202 (221)
+++|.|+...+..+++. +.+...|++++..+ .... +..+.++|.+.++. +++.++-.|-.+
T Consensus 115 ~~g~~Vlv~~p~y~~~~-------~~~~~~g~~~~~v~---~~~~~~~~~d~~~l~~~i~~-~~~~v~i~~p~NPtG~~~ 183 (391)
T PRK08361 115 EEGDEVIIPDPAFVCYV-------EDAKIAEAKPIRIP---LREENEFQPDPDELLELITK-RTRMIVINYPNNPTGATL 183 (391)
T ss_pred CCCCEEEEcCCCCcccH-------HHHHHcCCEEEEEe---cCCccCCCCCHHHHHHhccc-ccEEEEEeCCCCCCCcCc
Confidence 37888888876555432 34445688776211 1112 23667777665543 456666544322
Q ss_pred --HHHHHHHHHHHhcC
Q 045468 203 --LFLKEHELLGRSTG 216 (221)
Q Consensus 203 --~~~~~~~~~~~~~g 216 (221)
.++.+.++++++.|
T Consensus 184 ~~~~~~~l~~~~~~~~ 199 (391)
T PRK08361 184 DKEVAKAIADIAEDYN 199 (391)
T ss_pred CHHHHHHHHHHHHHcC
Confidence 23667777787766
No 127
>PRK02113 putative hydrolase; Provisional
Probab=53.18 E-value=16 Score=29.91 Aligned_cols=27 Identities=22% Similarity=0.127 Sum_probs=25.2
Q ss_pred eecCCCHHHHHHHHHHcCCCEEEEcCC
Q 045468 174 TSGHGYRGELEEVLKLVKPQHFLPIHG 200 (221)
Q Consensus 174 ~SGHA~~~dL~~~i~~i~Pk~iiPVHg 200 (221)
..||.+.++..++++.++||.++++|=
T Consensus 197 ~~~H~t~~~a~~~~~~~~~k~l~l~H~ 223 (252)
T PRK02113 197 HPTHQSLEEALENIKRIGAKETYLIHM 223 (252)
T ss_pred CCCcCCHHHHHHHHHHhCCCEEEEEcc
Confidence 468999999999999999999999994
No 128
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=52.98 E-value=1.1e+02 Score=27.27 Aligned_cols=75 Identities=11% Similarity=0.014 Sum_probs=44.7
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEE---Ec--CCChHHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFL---PI--HGELLFL 205 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~ii---PV--Hge~~~~ 205 (221)
++||.++.+.. .|-.-...+...+...|+++. .+.. .+.++|.+.++. +++.++ |. .|.-.++
T Consensus 97 ~pGD~Vvv~~p---~Y~~t~~~~~~~~~~~g~~v~-----~v~~---~d~~~l~~~i~~-~tklV~l~~P~NPtG~v~dl 164 (405)
T PRK08776 97 QPGDTLVVPHD---AYGGSWRLFNALAKKGHFALI-----TADL---TDPRSLADALAQ-SPKLVLIETPSNPLLRITDL 164 (405)
T ss_pred CCCCEEEEccC---CchHHHHHHHHHHHhcCcEEE-----EECC---CCHHHHHHhcCc-CCeEEEEECCCCCCCccCCH
Confidence 48898887654 333322233344566787775 2211 255666655532 567666 43 4556688
Q ss_pred HHHHHHHHhcCC
Q 045468 206 KEHELLGRSTGI 217 (221)
Q Consensus 206 ~~~~~~~~~~g~ 217 (221)
.+.++++++.|+
T Consensus 165 ~~I~~la~~~gi 176 (405)
T PRK08776 165 RFVIEAAHKVGA 176 (405)
T ss_pred HHHHHHHHHcCC
Confidence 888999998874
No 129
>PRK06290 aspartate aminotransferase; Provisional
Probab=52.90 E-value=1.5e+02 Score=26.23 Aligned_cols=96 Identities=15% Similarity=0.034 Sum_probs=52.5
Q ss_pred EEEEecCCCccHHHHHHHHhcCCCCCcccCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeee--cCCC
Q 045468 102 LLIVTTGSQAEPRAALNLASYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTS--GHGY 179 (221)
Q Consensus 102 ~vi~~~g~~~e~~~~l~~~~~~~~~~~~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~S--GHA~ 179 (221)
-++++.|++.-+...+ .... ++||.|++..+..+++.. .+...|++++..+ +... ...+
T Consensus 108 ~I~it~Gs~~al~~~~-~~~~--------~~gd~Vlv~~P~y~~~~~-------~~~~~g~~v~~v~---~~~~~~~~~d 168 (410)
T PRK06290 108 EVIHSIGSKPALAMLP-SCFI--------NPGDVTLMTVPGYPVTGT-------HTKYYGGEVYNLP---LLEENNFLPD 168 (410)
T ss_pred eEEEccCHHHHHHHHH-HHhC--------CCCCEEEEeCCCCccHHH-------HHHHcCCEEEEEe---cCCCcCCcCC
Confidence 4677777754332322 2222 388999888876666543 3344688776321 1111 1234
Q ss_pred HHHHHHHHHHcCCCEEEEcCC--------ChHHHHHHHHHHHhcCC
Q 045468 180 RGELEEVLKLVKPQHFLPIHG--------ELLFLKEHELLGRSTGI 217 (221)
Q Consensus 180 ~~dL~~~i~~i~Pk~iiPVHg--------e~~~~~~~~~~~~~~g~ 217 (221)
.++|.+.+.. +++.++-.+= ...++.+..++|++.|+
T Consensus 169 ~~~l~~~~~~-~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~ 213 (410)
T PRK06290 169 LDSIPKDIKE-KAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNI 213 (410)
T ss_pred HHHHHHhhcc-cceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCe
Confidence 5555544432 5666665531 23467777888887763
No 130
>PLN02187 rooty/superroot1
Probab=52.69 E-value=1.2e+02 Score=27.33 Aligned_cols=78 Identities=15% Similarity=0.046 Sum_probs=43.7
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCC--------h
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGE--------L 202 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge--------~ 202 (221)
++||.|++..+..|++.. .....|++++..+... .-...-+.++|...++. +++.++-.|=- .
T Consensus 153 ~pGd~Vlv~~P~y~~y~~-------~~~~~g~~~~~~~l~~-~~~~~~d~~~l~~~~~~-~~~~v~i~nP~NPTG~v~s~ 223 (462)
T PLN02187 153 RPNANILLPRPGFPHYDA-------RAAYSGLEVRKFDLLP-EKEWEIDLEGIEAIADE-NTVAMVVINPNNPCGNVYSH 223 (462)
T ss_pred CCCCEEEEeCCCCccHHH-------HHHHcCCEEEEEeCcc-ccCCccCHHHHHHhcCC-CcEEEEEeCCCCCCCCccCH
Confidence 389999988876666533 2445677775211000 01123345555544321 34566666622 3
Q ss_pred HHHHHHHHHHHhcCC
Q 045468 203 LFLKEHELLGRSTGI 217 (221)
Q Consensus 203 ~~~~~~~~~~~~~g~ 217 (221)
.++.+.+++|++.|+
T Consensus 224 e~l~~i~~~a~~~~i 238 (462)
T PLN02187 224 DHLKKVAETARKLGI 238 (462)
T ss_pred HHHHHHHHHHHHCCC
Confidence 367888888888774
No 131
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=52.66 E-value=1e+02 Score=27.07 Aligned_cols=75 Identities=15% Similarity=0.167 Sum_probs=41.3
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEE---EcC--CChHHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFL---PIH--GELLFL 205 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~ii---PVH--ge~~~~ 205 (221)
++||.++.+....++ ....+.......++++. ... -.+.+++.+.++. +++.++ |.+ |.-.++
T Consensus 88 ~~GD~Vl~~~p~y~~---~~~~~~~~~~~~~~~v~-----~~d---~~d~~~l~~ai~~-~tklV~l~~p~NPtG~~~dl 155 (382)
T TIGR02080 88 GPDDLLVAPHDCYGG---TYRLLNALAKKGCFRVL-----FVD---QGDEQALRAALAQ-KPKLVLIETPSNPLLRVVDI 155 (382)
T ss_pred CCCCEEEEcCCCcHH---HHHHHHHHHhhcCeEEE-----EEC---CCCHHHHHHhcCc-CceEEEEECCCCCCCEecCH
Confidence 488988776653322 22222233444456654 111 1244555544432 456666 444 555678
Q ss_pred HHHHHHHHhcCC
Q 045468 206 KEHELLGRSTGI 217 (221)
Q Consensus 206 ~~~~~~~~~~g~ 217 (221)
.+.+++|++.|+
T Consensus 156 ~~I~~la~~~g~ 167 (382)
T TIGR02080 156 AKICHLAKAVGA 167 (382)
T ss_pred HHHHHHHHHcCC
Confidence 888889998874
No 132
>PRK08068 transaminase; Reviewed
Probab=52.43 E-value=1.2e+02 Score=26.45 Aligned_cols=95 Identities=13% Similarity=0.027 Sum_probs=50.6
Q ss_pred EEEEecCCCccHHHHHHHHhcCCCCCcccCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeee-c-CCC
Q 045468 102 LLIVTTGSQAEPRAALNLASYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTS-G-HGY 179 (221)
Q Consensus 102 ~vi~~~g~~~e~~~~l~~~~~~~~~~~~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~S-G-HA~ 179 (221)
-+++++|++......+..+. +++|.|++..+..+++.. .+...|++++..+ .... | ..+
T Consensus 96 ~i~it~G~~~~l~~~~~~~~---------~~gd~vlv~~P~y~~~~~-------~~~~~g~~~~~i~---~~~~~~~~~d 156 (389)
T PRK08068 96 EVAILFGGKAGLVELPQCLM---------NPGDTILVPDPGYPDYLS-------GVALARAQFETMP---LIAENNFLPD 156 (389)
T ss_pred cEEEcCCcHHHHHHHHHHhC---------CCCCEEEEcCCCCcchHH-------HHHhcCCEEEEee---cccccCCCCC
Confidence 35677777554443333221 378998888776655543 2345687776211 1100 1 234
Q ss_pred HHHHHHHHHHcCCCEEEEcCCChH--------HHHHHHHHHHhcC
Q 045468 180 RGELEEVLKLVKPQHFLPIHGELL--------FLKEHELLGRSTG 216 (221)
Q Consensus 180 ~~dL~~~i~~i~Pk~iiPVHge~~--------~~~~~~~~~~~~g 216 (221)
.+++.+.+.. +++.++-..--+| ++.+.++++++.|
T Consensus 157 ~~~l~~~~~~-~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~ 200 (389)
T PRK08068 157 YTKIPEEVAE-KAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHN 200 (389)
T ss_pred HHHHHHhccc-cceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcC
Confidence 4555544422 5676665533333 6667777777665
No 133
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor. Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.
Probab=52.24 E-value=77 Score=27.73 Aligned_cols=61 Identities=15% Similarity=0.228 Sum_probs=40.4
Q ss_pred HHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHc--CCCEEEEcCCChHHHHHHHHHHHhcCCCC
Q 045468 152 KMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLV--KPQHFLPIHGELLFLKEHELLGRSTGIRH 219 (221)
Q Consensus 152 ~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i--~Pk~iiPVHge~~~~~~~~~~~~~~g~~~ 219 (221)
.+.+.+.+.|+++.. +....+...|+...+..+ +|+.|| +.|...+.....+-|++.|+..
T Consensus 167 ~~~~~~~~~gi~v~~------~~~~~~~~~d~~~~l~~ik~~~~vIi-~~~~~~~~~~i~~qa~~~g~~~ 229 (399)
T cd06384 167 GVFLALQEENANVSA------HPYHIEKNSDIIEIIQFIKQNGRIVY-ICGPLETFLEIMLQAQREGLTP 229 (399)
T ss_pred HHHHHHHhcCceEEE------EEEeccchhhHHHHHHHHhhcccEEE-EeCCchHHHHHHHHHHHcCCCC
Confidence 456777888988761 222233345555555555 676555 5677778888899999999854
No 134
>PLN02509 cystathionine beta-lyase
Probab=52.20 E-value=67 Score=29.32 Aligned_cols=73 Identities=15% Similarity=0.250 Sum_probs=45.1
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCC--EEE---EcC--CChH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQ--HFL---PIH--GELL 203 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk--~ii---PVH--ge~~ 203 (221)
++||.||.+....+++.. .+.+.+.+.|+++. .+. +.+.++ +.+.++|+ .++ |.+ |...
T Consensus 169 ~~GD~VI~~~~~y~~t~~---ll~~~l~~~G~~v~-----~vd---~~d~e~---l~~ai~~~TklV~lesPsNPtG~i~ 234 (464)
T PLN02509 169 KNGEEIVAGDDVYGGSDR---LLSQVVPRSGVVVK-----RVN---TTNLDE---VAAAIGPQTKLVWLESPTNPRQQIS 234 (464)
T ss_pred CCCCEEEEcCCchhhHHH---HHHHHHHHCCeEEE-----EeC---CCCHHH---HHHhCCcCCeEEEEECCCCCCCCHH
Confidence 489998876653333322 23345677888775 222 334444 45556663 443 544 7788
Q ss_pred HHHHHHHHHHhcCC
Q 045468 204 FLKEHELLGRSTGI 217 (221)
Q Consensus 204 ~~~~~~~~~~~~g~ 217 (221)
++.+.+++|++.|+
T Consensus 235 Dl~~I~~lAk~~g~ 248 (464)
T PLN02509 235 DIRKIAEMAHAQGA 248 (464)
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999999884
No 135
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=52.16 E-value=1.1e+02 Score=27.13 Aligned_cols=81 Identities=16% Similarity=0.101 Sum_probs=48.1
Q ss_pred cCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCC-----ChHH
Q 045468 130 LTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHG-----ELLF 204 (221)
Q Consensus 130 ~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHg-----e~~~ 204 (221)
++++|.++++....|+.-. .+.......|+++...+ ....+.-+.+++.+.+.. +++.++-.|- --..
T Consensus 119 ~~~gd~vl~~~~~~~s~~~---~~~~~a~~~g~~v~~v~---~~~~~~~~~~~l~~~i~~-~t~lv~i~~~~n~tG~~~~ 191 (424)
T PLN02855 119 LKPGDEVILSVAEHHSNIV---PWQLVAQKTGAVLKFVG---LTPDEVLDVEQLKELLSE-KTKLVATHHVSNVLGSILP 191 (424)
T ss_pred CCCcCEEEECCCccHHHHH---HHHHHHHHcCCEEEEEe---cCCCCCcCHHHHHHHhcc-CceEEEEeCccccccccCC
Confidence 3578888887764443222 22334456788776211 112355677777776653 6777776663 3335
Q ss_pred HHHHHHHHHhcCC
Q 045468 205 LKEHELLGRSTGI 217 (221)
Q Consensus 205 ~~~~~~~~~~~g~ 217 (221)
+.+.++++++.|+
T Consensus 192 ~~~I~~l~~~~g~ 204 (424)
T PLN02855 192 VEDIVHWAHAVGA 204 (424)
T ss_pred HHHHHHHHHHcCC
Confidence 6677888888874
No 136
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=51.91 E-value=17 Score=28.01 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=18.4
Q ss_pred EeccccHH----HHHHHHHHHHHcCCeEEEEcccH
Q 045468 38 TQFASNIH----RLGSVKAAADLTGRKLVFVGMSL 68 (221)
Q Consensus 38 ~~~a~ni~----Rl~~i~~~a~~~gR~~vi~~~~~ 68 (221)
.-|+.+++ ++.++++.++..|++++++|.+.
T Consensus 44 ~~f~~~~~~~~~~l~~~L~~~~~~gk~I~~yGA~~ 78 (160)
T PF08484_consen 44 ENFAKRVEQSKAELREFLEKLKAEGKRIAGYGAGA 78 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT--EEEE---S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCEEEEECcch
Confidence 33555555 45677777888899999998764
No 137
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=51.79 E-value=1.3e+02 Score=26.57 Aligned_cols=75 Identities=11% Similarity=0.126 Sum_probs=43.3
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEE---Ec--CCChHHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFL---PI--HGELLFL 205 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~ii---PV--Hge~~~~ 205 (221)
.+||.+|.+.+..+ .....+.+.+...|+++. .+.. .+.+++...++. +++.++ |. .|...++
T Consensus 96 ~~Gd~Vi~~~~~y~---~t~~~~~~~~~~~G~~~~-----~vd~---~d~e~l~~~i~~-~tklV~le~p~Np~G~v~dl 163 (391)
T TIGR01328 96 KAGDHLISDECLYG---CTFALLEHALTKFGIQVD-----FINM---AIPEEVKAHIKD-NTKIVYFETPANPTMKLIDM 163 (391)
T ss_pred CCCCEEEEecCcch---HHHHHHHHHHhcCCeEEE-----EECC---CCHHHHHHhhcc-CCeEEEEECCCCCCCcccCH
Confidence 47888887665322 223344455667888765 2211 144555444321 345666 53 3455578
Q ss_pred HHHHHHHHhcCC
Q 045468 206 KEHELLGRSTGI 217 (221)
Q Consensus 206 ~~~~~~~~~~g~ 217 (221)
.+.++++++.|+
T Consensus 164 ~~I~~la~~~gi 175 (391)
T TIGR01328 164 ERVCRDAHSQGV 175 (391)
T ss_pred HHHHHHHHHcCC
Confidence 888999998885
No 138
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=51.40 E-value=1.8e+02 Score=25.94 Aligned_cols=76 Identities=21% Similarity=0.169 Sum_probs=56.2
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeee--cCCCHHHHHHHHHHc-CCCEEEEcCCChH----
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTS--GHGYRGELEEVLKLV-KPQHFLPIHGELL---- 203 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~S--GHA~~~dL~~~i~~i-~Pk~iiPVHge~~---- 203 (221)
+|+|.++......+| .++.++..+.|.++. .+.++ -=.+++++++.++.- ..+.+.-+|.|-.
T Consensus 78 ~pgdkVLv~~nG~FG-----~R~~~ia~~~g~~v~-----~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvl 147 (383)
T COG0075 78 EPGDKVLVVVNGKFG-----ERFAEIAERYGAEVV-----VLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVL 147 (383)
T ss_pred CCCCeEEEEeCChHH-----HHHHHHHHHhCCceE-----EEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCccccc
Confidence 478888888776666 355678888898876 33333 335788899888855 4579999999833
Q ss_pred -HHHHHHHHHHhcC
Q 045468 204 -FLKEHELLGRSTG 216 (221)
Q Consensus 204 -~~~~~~~~~~~~g 216 (221)
.+.+-+++++++|
T Consensus 148 npl~~I~~~~k~~g 161 (383)
T COG0075 148 NPLKEIAKAAKEHG 161 (383)
T ss_pred CcHHHHHHHHHHcC
Confidence 7888888888876
No 139
>PRK07683 aminotransferase A; Validated
Probab=51.29 E-value=1e+02 Score=26.91 Aligned_cols=74 Identities=18% Similarity=0.155 Sum_probs=42.5
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeec---CCCHHHHHHHHHHcCCCEEEEcCCC------
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSG---HGYRGELEEVLKLVKPQHFLPIHGE------ 201 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SG---HA~~~dL~~~i~~i~Pk~iiPVHge------ 201 (221)
++||.|+...+..+++.. ++...|++++. +.... .-+.+++...++. +++.++-.+-.
T Consensus 111 ~~gd~Vl~~~p~y~~~~~-------~~~~~g~~~~~-----~~~~~~~~~~~~~~l~~~~~~-~~~~i~i~~p~NPtG~~ 177 (387)
T PRK07683 111 EPGTEVILPAPIYPGYEP-------IIRLCGAKPVF-----IDTRSTGFRLTAEALENAITE-KTRCVVLPYPSNPTGVT 177 (387)
T ss_pred CCCCEEEEcCCCccchHH-------HHHHcCCEEEE-----eecCcccCCCCHHHHHHhcCc-CceEEEEeCCCCCCCcC
Confidence 378998888775555543 23456887762 22221 2244566655432 45655533222
Q ss_pred --hHHHHHHHHHHHhcCC
Q 045468 202 --LLFLKEHELLGRSTGI 217 (221)
Q Consensus 202 --~~~~~~~~~~~~~~g~ 217 (221)
..++.+.++++++.|+
T Consensus 178 ~s~~~~~~l~~~~~~~~~ 195 (387)
T PRK07683 178 LSKEELQDIADVLKDKNI 195 (387)
T ss_pred CCHHHHHHHHHHHHHcCe
Confidence 2457888888888774
No 140
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=51.15 E-value=1.1e+02 Score=26.29 Aligned_cols=56 Identities=13% Similarity=0.109 Sum_probs=32.5
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEE
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFL 196 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~ii 196 (221)
++||.|+...+ +|.. ........|++++..+. .-.+..+.+++.+.++.-+++.++
T Consensus 98 ~~gd~Vlv~~p---~y~~----~~~~~~~~g~~~~~v~~---~~~~~~d~~~l~~~~~~~~~k~v~ 153 (351)
T PRK14807 98 NKGDVVIYPHP---SFAM----YSVYSKIAGAVEIPVKL---KEDYTYDVGSFIKVIEKYQPKLVF 153 (351)
T ss_pred CCCCEEEEeCC---ChHH----HHHHHHHcCCeEEEeec---CCCCCCCHHHHHHHhhccCCCEEE
Confidence 47888887654 4432 12234556877763211 112456677777777655778777
No 141
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=50.94 E-value=17 Score=31.84 Aligned_cols=33 Identities=24% Similarity=0.503 Sum_probs=27.8
Q ss_pred HHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHc
Q 045468 152 KMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLV 190 (221)
Q Consensus 152 ~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i 190 (221)
..+..|.+.|+.++ ++.+| |.+.++++++++.+
T Consensus 18 e~l~~li~aGm~v~-----RiN~S-Hg~~e~~~~~i~~i 50 (348)
T PF00224_consen 18 EVLRKLIEAGMNVA-----RINFS-HGTHEEHKEIIENI 50 (348)
T ss_dssp HHHHHHHHHTEEEE-----EEETT-SS-HHHHHHHHHHH
T ss_pred HHHHHHHHhccEEE-----EEeee-cCCHHHHHHHHHHH
Confidence 35678888999998 89888 99999999999887
No 142
>PRK07337 aminotransferase; Validated
Probab=50.77 E-value=1.3e+02 Score=26.05 Aligned_cols=78 Identities=13% Similarity=0.009 Sum_probs=41.7
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCCh--------
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGEL-------- 202 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~-------- 202 (221)
+++|.|++..+..+++. .++...|++++..+.+ ....+--+.++|...++. +++.++-.+--+
T Consensus 112 ~~gd~Vlv~~p~y~~~~-------~~~~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~ 182 (388)
T PRK07337 112 ERGDEVLMPDPSYPCNR-------HFVAAAEGRPVLVPSG-PAERFQLTAADVEAAWGE-RTRGVLLASPSNPTGTSIAP 182 (388)
T ss_pred CCCCEEEEeCCCchhhH-------HHHHHcCCEEEEeecC-CccCCcCCHHHHHhhcCc-cceEEEEECCCCCCCcCcCH
Confidence 47899988877655442 3345567776522111 011223455665554432 335555433322
Q ss_pred HHHHHHHHHHHhcCC
Q 045468 203 LFLKEHELLGRSTGI 217 (221)
Q Consensus 203 ~~~~~~~~~~~~~g~ 217 (221)
.++.+.++++++.|+
T Consensus 183 ~~~~~i~~~a~~~~~ 197 (388)
T PRK07337 183 DELRRIVEAVRARGG 197 (388)
T ss_pred HHHHHHHHHHHHCCC
Confidence 357777888887763
No 143
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=50.66 E-value=71 Score=25.57 Aligned_cols=64 Identities=11% Similarity=-0.001 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHc---CCCEEEEcCCChHHHHHHHHHHHhcCCC
Q 045468 149 RVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLV---KPQHFLPIHGELLFLKEHELLGRSTGIR 218 (221)
Q Consensus 149 ~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i---~Pk~iiPVHge~~~~~~~~~~~~~~g~~ 218 (221)
...-+.+...+.|+++. .+ +.+..+.+.....++.+ +|+.+|-.......+....+.+.+.|++
T Consensus 16 ~~~g~~~~a~~~g~~~~-----~~-~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIp 82 (257)
T PF13407_consen 16 VIKGAKAAAKELGYEVE-----IV-FDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKAAGIP 82 (257)
T ss_dssp HHHHHHHHHHHHTCEEE-----EE-EESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHcCCEEE-----Ee-CCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhhcCce
Confidence 34456677778888775 23 56777777777777777 7888888888877778888888888874
No 144
>PLN02242 methionine gamma-lyase
Probab=50.54 E-value=1.3e+02 Score=26.99 Aligned_cols=76 Identities=8% Similarity=-0.014 Sum_probs=42.5
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHH-cCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCCh-----HH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISE-IGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGEL-----LF 204 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~-~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~-----~~ 204 (221)
++||.|+...+..+++ ...+..++.+ .|+++. .+. ..+.+++...++.-+++.++..+-.+ .+
T Consensus 113 ~~GD~Vl~~~~~Y~~~---~~~~~~~~~~~~G~~~~-----~~d---~~d~e~l~~~i~~~~tklV~lesp~NPtG~v~d 181 (418)
T PLN02242 113 SSGGHVVASNTLYGGT---HALLAHFLPRKCNITTT-----FVD---ITDLEAVKKAVVPGKTKVLYFESISNPTLTVAD 181 (418)
T ss_pred CCCCEEEEcCCcHHHH---HHHHHHhhhhccCceEE-----EcC---CCCHHHHHHhcCcCCCEEEEEecCCCCCCcccC
Confidence 3889888776533333 2233345544 677664 221 23555555544321355666544433 47
Q ss_pred HHHHHHHHHhcCC
Q 045468 205 LKEHELLGRSTGI 217 (221)
Q Consensus 205 ~~~~~~~~~~~g~ 217 (221)
+.+.+++|++.|+
T Consensus 182 l~~I~~la~~~gi 194 (418)
T PLN02242 182 IPELARIAHEKGV 194 (418)
T ss_pred HHHHHHHHHHhCC
Confidence 8888889998884
No 145
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=50.40 E-value=2.2e+02 Score=26.79 Aligned_cols=151 Identities=14% Similarity=0.129 Sum_probs=83.0
Q ss_pred HHHHHHhc-CCcEEEEeccccHHHHHHHHHHHHHcCCeEEEEcccHHHHHHHHHHCCCCCC--------CCCCccChhhh
Q 045468 24 LMRHVSAA-KGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPI--------DPSTLVKVEDI 94 (221)
Q Consensus 24 i~~~~~~~-~g~viv~~~a~ni~Rl~~i~~~a~~~gR~~vi~~~~~~~~~~~~~~~g~~~~--------~~~~~v~~~~~ 94 (221)
+.+++++. .+.++|...+-.-++.+.+++-|.++|-.+-... .+..+.. ..+.++. .+..-.+...+
T Consensus 169 i~~~v~~~~~~~iiiAips~~~~~~~~i~~~l~~~~~~v~~lP-~~~~l~~---~~~~lreI~ieDLLgR~pV~~d~~~i 244 (588)
T COG1086 169 IERVVEELGIQLILIAIPSASQEERRRILLRLARTGIAVRILP-QLTDLKD---LNGQLREIEIEDLLGRPPVALDTELI 244 (588)
T ss_pred HHHHHHHcCCceEEEecCCCCHHHHHHHHHHHHhcCCcEEecC-cHHHHHH---hccccccCCHHHHhCCCCCCCCHHHH
Confidence 34444432 3588888877778899999999999984333333 2334443 2121211 01111234444
Q ss_pred hhcCCCCEEEEecCCCccHHHHHHHHhcCCCCCcccCCCCEEEEEecCCCCcHHHHHHHHHHHHHc-C-CeEEecCCcee
Q 045468 95 DAYAPKDLLIVTTGSQAEPRAALNLASYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEI-G-STIVMGRNEGL 172 (221)
Q Consensus 95 ~~~~~~~~vi~~~g~~~e~~~~l~~~~~~~~~~~~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~-g-~~v~~~~~~~~ 172 (221)
..+-..+ .+++||..|.+.+.|++..-. .+|+-.++|+-.+ .....+...|... + .++. .
T Consensus 245 ~~~~~gK-~vLVTGagGSiGsel~~qil~------~~p~~i~l~~~~E-----~~~~~i~~el~~~~~~~~~~------~ 306 (588)
T COG1086 245 GAMLTGK-TVLVTGGGGSIGSELCRQILK------FNPKEIILFSRDE-----YKLYLIDMELREKFPELKLR------F 306 (588)
T ss_pred HhHcCCC-EEEEeCCCCcHHHHHHHHHHh------cCCCEEEEecCch-----HHHHHHHHHHHhhCCCcceE------E
Confidence 4443444 466778889998887754322 2477677777752 2223344444442 2 2221 1
Q ss_pred eeecCCCHHHHHHHHHHcCCCEEE
Q 045468 173 HTSGHGYRGELEEVLKLVKPQHFL 196 (221)
Q Consensus 173 h~SGHA~~~dL~~~i~~i~Pk~ii 196 (221)
.---=.+++-+...++..+|..++
T Consensus 307 ~igdVrD~~~~~~~~~~~kvd~Vf 330 (588)
T COG1086 307 YIGDVRDRDRVERAMEGHKVDIVF 330 (588)
T ss_pred EecccccHHHHHHHHhcCCCceEE
Confidence 122234677777888888888875
No 146
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=50.28 E-value=2e+02 Score=26.06 Aligned_cols=101 Identities=20% Similarity=0.242 Sum_probs=52.2
Q ss_pred HcCCeEEEEcccHHHHHHHHHHCCCC-CCCCCCccChhhhh-hc-CCCCE-EEEecCCC-ccHHHHHHHHhcCCCCCccc
Q 045468 56 LTGRKLVFVGMSLRTYLDAAWKDGKA-PIDPSTLVKVEDID-AY-APKDL-LIVTTGSQ-AEPRAALNLASYGGSHSLKL 130 (221)
Q Consensus 56 ~~gR~~vi~~~~~~~~~~~~~~~g~~-~~~~~~~v~~~~~~-~~-~~~~~-vi~~~g~~-~e~~~~l~~~~~~~~~~~~~ 130 (221)
..|-++.++.|+....-+.+.+.+.. ++-+ ..+.+++- .+ +|.++ +++..|.. ......|.- -+
T Consensus 24 ~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~--~~sieefV~~Le~PRkI~lMVkAG~~VD~~I~~L~p---------~L 92 (473)
T COG0362 24 DHGYTVAVYNRTTEKTDEFLAERAKGKNIVP--AYSIEEFVASLEKPRKILLMVKAGTPVDAVIEQLLP---------LL 92 (473)
T ss_pred hcCceEEEEeCCHHHHHHHHHhCccCCCccc--cCcHHHHHHHhcCCceEEEEEecCCcHHHHHHHHHh---------hc
Confidence 47899999999975554445443211 1111 11333321 11 23344 44444432 222333322 24
Q ss_pred CCCCEEEEEecCCC-CcHHHHHHHHHHHHHcCCeEEecCCceeeeec
Q 045468 131 TNEDVILYSAKVIP-GNESRVMKMLNRISEIGSTIVMGRNEGLHTSG 176 (221)
Q Consensus 131 ~~~~~vI~s~~~~p-g~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SG 176 (221)
+++|.+|=.+.... .++ +-...|.+.|+.++ ...+||
T Consensus 93 e~gDIiIDGGNs~y~DT~----RR~~eL~~~Gi~Fv-----G~GVSG 130 (473)
T COG0362 93 EKGDIIIDGGNSHYKDTI----RRNKELSEKGILFV-----GMGVSG 130 (473)
T ss_pred CCCCEEEeCCCcCCchHH----HHHHHHHhcCCeEE-----eccccc
Confidence 58888776665322 333 33477899999888 555665
No 147
>PRK06108 aspartate aminotransferase; Provisional
Probab=50.09 E-value=1.7e+02 Score=25.22 Aligned_cols=79 Identities=10% Similarity=-0.052 Sum_probs=41.5
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCC--------Ch
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHG--------EL 202 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHg--------e~ 202 (221)
+++|.+++..+..+++. ..+...|++++..+.+.-...+--+.++|...+.. +++.++-.+- ..
T Consensus 106 ~~gd~vl~~~p~y~~~~-------~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~-~~~~i~l~~p~NPtG~~~~~ 177 (382)
T PRK06108 106 GPGDEVVAVTPLWPNLV-------AAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITP-RTRALFINSPNNPTGWTASR 177 (382)
T ss_pred CCCCEEEEeCCCccchH-------HHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcCc-cceEEEEECCCCCCCcccCH
Confidence 37889888776554443 23456788776211100000112345555554422 4555554442 22
Q ss_pred HHHHHHHHHHHhcCC
Q 045468 203 LFLKEHELLGRSTGI 217 (221)
Q Consensus 203 ~~~~~~~~~~~~~g~ 217 (221)
.++.+.++++++.|+
T Consensus 178 ~~~~~l~~~~~~~~~ 192 (382)
T PRK06108 178 DDLRAILAHCRRHGL 192 (382)
T ss_pred HHHHHHHHHHHHCCc
Confidence 367777888887764
No 148
>PRK08187 pyruvate kinase; Validated
Probab=50.04 E-value=25 Score=32.37 Aligned_cols=33 Identities=12% Similarity=0.260 Sum_probs=29.0
Q ss_pred HHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHc
Q 045468 152 KMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLV 190 (221)
Q Consensus 152 ~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i 190 (221)
.++..|.+.|++++ ++.|| |.+.++.+++++.+
T Consensus 150 e~i~~Li~aGmdva-----RiN~S-Hg~~e~~~~~i~~v 182 (493)
T PRK08187 150 DFVLRLAERGMDCA-----RINCA-HDDPAAWQAMIGHL 182 (493)
T ss_pred HHHHHHHHCCCCEE-----EEECC-CCCHHHHHHHHHHH
Confidence 45678889999998 89888 99999999999876
No 149
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=49.97 E-value=1.7e+02 Score=25.39 Aligned_cols=80 Identities=20% Similarity=0.098 Sum_probs=48.0
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCCh-----HHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGEL-----LFL 205 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~-----~~~ 205 (221)
+++|.|+.+....+++-. .+.......|+++...+ ....|..+.++|++.+.. +|+.++-.|..+ -.+
T Consensus 106 ~~g~~vl~~~~~~~s~~~---~~~~~~~~~g~~~~~v~---~~~~~~~~~~~l~~~i~~-~~~lv~~~~~~~~tG~~~~~ 178 (403)
T TIGR01979 106 KAGDEIVISEMEHHANIV---PWQLLAERTGATLKFIP---LDDDGTLDLDDLEKLLTE-KTKLVAITHVSNVLGTVNPV 178 (403)
T ss_pred CCCCEEEECcchhhHHHH---HHHHHHHhcCcEEEEEe---cCCCCCCCHHHHHHHhcc-CCeEEEEEcccccccccCCH
Confidence 478888887664443222 22333456788765211 112466777777766643 577777777543 347
Q ss_pred HHHHHHHHhcCC
Q 045468 206 KEHELLGRSTGI 217 (221)
Q Consensus 206 ~~~~~~~~~~g~ 217 (221)
.+.++++++.|+
T Consensus 179 ~~i~~~~~~~~~ 190 (403)
T TIGR01979 179 EEIAKLAHQVGA 190 (403)
T ss_pred HHHHHHHHHcCC
Confidence 778888888874
No 150
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=49.94 E-value=1.7e+02 Score=26.62 Aligned_cols=80 Identities=18% Similarity=0.138 Sum_probs=49.2
Q ss_pred cCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCce-------eeeecCCCHHHHHHHHHHc---CCCEEEEcC
Q 045468 130 LTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEG-------LHTSGHGYRGELEEVLKLV---KPQHFLPIH 199 (221)
Q Consensus 130 ~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~-------~h~SGHA~~~dL~~~i~~i---~Pk~iiPVH 199 (221)
+++|| +|.+.+-++.+.. ++...|++++....+. ..+.|.-+.++|++.+..- +++.++..+
T Consensus 114 l~pGD-Vii~~p~~~~~~~-------~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~ 185 (460)
T PRK13238 114 IKKGD-VVPSNYHFDTTRA-------HIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTI 185 (460)
T ss_pred CCCCC-EEccCCcccchHH-------HHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcCCCceeEEEEec
Confidence 35899 7766554444443 2334787666322211 2356778899999998764 345666432
Q ss_pred -----C----ChHHHHHHHHHHHhcCC
Q 045468 200 -----G----ELLFLKEHELLGRSTGI 217 (221)
Q Consensus 200 -----g----e~~~~~~~~~~~~~~g~ 217 (221)
| ...++.+.++++++.|+
T Consensus 186 p~NptGG~v~s~~~l~~I~~ia~~~gi 212 (460)
T PRK13238 186 TNNSAGGQPVSMANLRAVYEIAKKYGI 212 (460)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHcCC
Confidence 2 24457788889998885
No 151
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=49.79 E-value=1.3e+02 Score=24.17 Aligned_cols=84 Identities=15% Similarity=0.097 Sum_probs=43.8
Q ss_pred EEEEecCCCccHHHHHHHHhcCCCCCcccCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHH
Q 045468 102 LLIVTTGSQAEPRAALNLASYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRG 181 (221)
Q Consensus 102 ~vi~~~g~~~e~~~~l~~~~~~~~~~~~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~ 181 (221)
+++++||+...+-+.+..+..+. ++-.-.+++|+.+ ......+-.+.|++++.-+. .-..+-....+
T Consensus 2 i~vl~Sg~Gsn~~al~~~~~~~~-----l~~~i~~visn~~-------~~~~~~~A~~~gIp~~~~~~-~~~~~~~~~~~ 68 (207)
T PLN02331 2 LAVFVSGGGSNFRAIHDACLDGR-----VNGDVVVVVTNKP-------GCGGAEYARENGIPVLVYPK-TKGEPDGLSPD 68 (207)
T ss_pred EEEEEeCCChhHHHHHHHHHcCC-----CCeEEEEEEEeCC-------CChHHHHHHHhCCCEEEecc-ccCCCcccchH
Confidence 57888888666655555443331 2112244666643 11224556667886652110 00011223356
Q ss_pred HHHHHHHHcCCCEEEEc
Q 045468 182 ELEEVLKLVKPQHFLPI 198 (221)
Q Consensus 182 dL~~~i~~i~Pk~iiPV 198 (221)
++.+.++..+|..+|-.
T Consensus 69 ~~~~~l~~~~~Dliv~a 85 (207)
T PLN02331 69 ELVDALRGAGVDFVLLA 85 (207)
T ss_pred HHHHHHHhcCCCEEEEe
Confidence 77777888888877654
No 152
>PRK08960 hypothetical protein; Provisional
Probab=49.39 E-value=1.7e+02 Score=25.38 Aligned_cols=78 Identities=10% Similarity=-0.101 Sum_probs=40.5
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCC--------h
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGE--------L 202 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge--------~ 202 (221)
++||.|+...+..|++.. ++...|.+++..+.+. ....-.+.++|.+.++. +.+.++-.|-- .
T Consensus 114 ~~gd~vlv~~p~y~~~~~-------~~~~~g~~~~~v~~~~-~~~~~~d~~~l~~~~~~-~~~~i~i~~p~NPtG~~~~~ 184 (387)
T PRK08960 114 DPGKHWLLADPGYPCNRH-------FLRLVEGAAQLVPVGP-DSRYQLTPALVERHWNA-DTVGALVASPANPTGTLLSR 184 (387)
T ss_pred CCCCEEEEcCCCCcchHH-------HHHhcCCeEEEEecCc-ccCCCCCHHHHHHHhCc-cceEEEEECCCCCCCcCcCH
Confidence 489999988776665543 3344576665211100 00112445555544321 23344433322 2
Q ss_pred HHHHHHHHHHHhcCC
Q 045468 203 LFLKEHELLGRSTGI 217 (221)
Q Consensus 203 ~~~~~~~~~~~~~g~ 217 (221)
.++.+.++++++.|+
T Consensus 185 ~~~~~l~~~~~~~~~ 199 (387)
T PRK08960 185 DELAALSQALRARGG 199 (387)
T ss_pred HHHHHHHHHHHHcCC
Confidence 367778888888774
No 153
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=48.79 E-value=1.5e+02 Score=25.21 Aligned_cols=96 Identities=22% Similarity=0.232 Sum_probs=57.8
Q ss_pred EEEEecCCCccHHHHHHHHhcCCCCCcccCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceee----eecC
Q 045468 102 LLIVTTGSQAEPRAALNLASYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLH----TSGH 177 (221)
Q Consensus 102 ~vi~~~g~~~e~~~~l~~~~~~~~~~~~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h----~SGH 177 (221)
.+++++|+ .+....+..+.. .++++.+++..+..+++. ..+...|.+++ .+. -.+|
T Consensus 70 ~i~~~~G~-~~~~~~~~~~~~-------~~~~~~vlv~~P~y~~~~-------~~~~~~g~~~~-----~~~~~~~~~~~ 129 (363)
T PF00155_consen 70 NILVTSGA-QAALFLLLRLLK-------INPGDTVLVPDPCYPSYI-------EAARLLGAEVI-----PVPLDSENDFH 129 (363)
T ss_dssp GEEEESHH-HHHHHHHHHHHH-------SSTTSEEEEEESSSTHHH-------HHHHHTTSEEE-----EEEEEETTTTE
T ss_pred EEEEeccc-ccchhhhhhccc-------ccccccceecCCcccccc-------ccccccCceee-----ecccccccccc
Confidence 46666665 333344434331 237888888876555432 33455688876 333 3679
Q ss_pred CCHHHHHHHHHHc-----CCCEEEEcCC--------ChHHHHHHHHHHHhcCC
Q 045468 178 GYRGELEEVLKLV-----KPQHFLPIHG--------ELLFLKEHELLGRSTGI 217 (221)
Q Consensus 178 A~~~dL~~~i~~i-----~Pk~iiPVHg--------e~~~~~~~~~~~~~~g~ 217 (221)
.+.++|.+.++.. +|+.++-..= ...++.+.++++++.|+
T Consensus 130 ~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~ 182 (363)
T PF00155_consen 130 LDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNI 182 (363)
T ss_dssp ETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTS
T ss_pred ccccccccccccccccccccceeeecccccccccccccccccchhhhhccccc
Confidence 9999999999997 3343332221 23477777777887763
No 154
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=48.77 E-value=1.4e+02 Score=24.05 Aligned_cols=180 Identities=14% Similarity=0.100 Sum_probs=88.3
Q ss_pred CCCCCCHHHHHHHHHHH---HHhcCCcEEEEe--ccccHHHHHHHHHHHHHcCCeEEEE--cccHHHHHHHHHHCCCCCC
Q 045468 11 PGRTTSESVVKDALMRH---VSAAKGRVITTQ--FASNIHRLGSVKAAADLTGRKLVFV--GMSLRTYLDAAWKDGKAPI 83 (221)
Q Consensus 11 ~~~~~sE~~v~~~i~~~---~~~~~g~viv~~--~a~ni~Rl~~i~~~a~~~gR~~vi~--~~~~~~~~~~~~~~g~~~~ 83 (221)
.++..|-+++.+.+.+- +...+|-|.++- -.-..+=+..+++.|++.|-..+++ |..-...+..+.. ++
T Consensus 15 ~g~~~t~eel~~~~~~~~~f~~~sggGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~--~~-- 90 (213)
T PRK10076 15 IGRDITLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAK--LC-- 90 (213)
T ss_pred cCcccCHHHHHHHHHhhhHhhcCCCCEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHH--hc--
Confidence 34455666666665442 222445666665 1234566788999999999888885 4322222222222 11
Q ss_pred CCCCccChhhhhhcCCCCEEEEecCCCcc-HHHHHHHHhcCCCCCcccCCCCEEEEEecCCCCc---HHHHHHHHHHHHH
Q 045468 84 DPSTLVKVEDIDAYAPKDLLIVTTGSQAE-PRAALNLASYGGSHSLKLTNEDVILYSAKVIPGN---ESRVMKMLNRISE 159 (221)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~~vi~~~g~~~e-~~~~l~~~~~~~~~~~~~~~~~~vI~s~~~~pg~---e~~~~~~~~~l~~ 159 (221)
+...++.+..+. +.+ -..||...+ ....++.+.. .+--+.+....+||+ +.....+.+|+..
T Consensus 91 -D~~l~DiK~~d~---~~~-~~~tG~~~~~il~nl~~l~~---------~g~~v~iR~~vIPg~nd~~e~i~~ia~~l~~ 156 (213)
T PRK10076 91 -DEVLFDLKIMDA---TQA-RDVVKMNLPRVLENLRLLVS---------EGVNVIPRLPLIPGFTLSRENMQQALDVLIP 156 (213)
T ss_pred -CEEEEeeccCCH---HHH-HHHHCCCHHHHHHHHHHHHh---------CCCcEEEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 111222222111 000 011343333 2444544432 233466677778883 3456677788887
Q ss_pred cCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEE---EEcCCChHHHHHHHHHHHhcCCC
Q 045468 160 IGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHF---LPIHGELLFLKEHELLGRSTGIR 218 (221)
Q Consensus 160 ~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~i---iPVHge~~~~~~~~~~~~~~g~~ 218 (221)
.+++-+. --.+|..|-.-.+.| ...+- +|. ....++....+.+++.|++
T Consensus 157 l~~~~~~--llpyh~~g~~Ky~~l-------g~~y~~~~~~~-~~~~~l~~~~~~~~~~gl~ 208 (213)
T PRK10076 157 LGIKQIH--LLPFHQYGEPKYRLL-------GKTWSMKEVPA-PSSADVATMREMAERAGFQ 208 (213)
T ss_pred cCCceEE--EecCCccchhHHHHc-------CCcCccCCCCC-cCHHHHHHHHHHHHHcCCe
Confidence 7653220 013555543332222 21211 122 2345677778888888875
No 155
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=48.72 E-value=19 Score=29.66 Aligned_cols=38 Identities=11% Similarity=0.217 Sum_probs=28.9
Q ss_pred CeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcC
Q 045468 162 STIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIH 199 (221)
Q Consensus 162 ~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVH 199 (221)
+++...+....--.+|+..++...+.+.++|+.+||+|
T Consensus 174 ~DvallPig~~~~~~~~~~~~~~~~~~~l~~~~viP~H 211 (258)
T COG2220 174 VDVALLPIGGYPNATMMPPEAAVAAAEVLRPKRVIPMH 211 (258)
T ss_pred ccEEEeccCCCCCCccCCHHHHHHHHHHhcCCeEEeec
Confidence 45553333232247799999999999999999999999
No 156
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=48.32 E-value=1.8e+02 Score=25.16 Aligned_cols=78 Identities=13% Similarity=0.134 Sum_probs=44.4
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeee---ecCCCHHHHHHHHHHcCCCEEEEcCCC-----h
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHT---SGHGYRGELEEVLKLVKPQHFLPIHGE-----L 202 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~---SGHA~~~dL~~~i~~i~Pk~iiPVHge-----~ 202 (221)
++||.+++.....+++ ...+.......|+++.. +.. .|..+.++++..++. +++.++-.|-. -
T Consensus 102 ~~gd~vl~~~~~~~s~---~~~~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~l~~~i~~-~~~lv~i~~~~n~tG~~ 172 (397)
T TIGR01976 102 GPGDEVIVTRLDHEAN---ISPWLQAAERAGAKVKW-----ARVDEATGELHPDDLASLLSP-RTRLVAVTAASNTLGSI 172 (397)
T ss_pred CCCCEEEEcCCchHhH---HHHHHHHHHhcCCEEEE-----EeccccCCCcCHHHHHHhcCC-CceEEEEeCCCCCCCcc
Confidence 4788888765433332 22233445667888762 221 244556666655532 35566644443 3
Q ss_pred HHHHHHHHHHHhcCC
Q 045468 203 LFLKEHELLGRSTGI 217 (221)
Q Consensus 203 ~~~~~~~~~~~~~g~ 217 (221)
..+.+.++++++.|+
T Consensus 173 ~~~~~i~~~~~~~~~ 187 (397)
T TIGR01976 173 VDLAAITELVHAAGA 187 (397)
T ss_pred CCHHHHHHHHHHcCC
Confidence 367788888888874
No 157
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=48.03 E-value=2.1e+02 Score=25.78 Aligned_cols=78 Identities=17% Similarity=0.119 Sum_probs=47.3
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeec--CCCHHHHHHHHHH-----cCCCEEEEcCCC--
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSG--HGYRGELEEVLKL-----VKPQHFLPIHGE-- 201 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SG--HA~~~dL~~~i~~-----i~Pk~iiPVHge-- 201 (221)
++||.|++.++..++++... -.+.|++++... ++.+. ..+.++++..++. .++|.++..+=-
T Consensus 142 ~pGD~Vlv~~P~Y~~f~~~~------~~~~g~~vv~v~---~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NP 212 (447)
T PLN02607 142 DPGDALLVPTPYYPGFDRDL------RWRTGVKIVPIH---CDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNP 212 (447)
T ss_pred CCCCEEEEcCCCCcchHHHH------HhcCCcEEEEEe---CCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCC
Confidence 38999998888777776421 124677776211 11111 2577888877765 466666655332
Q ss_pred ------hHHHHHHHHHHHhcCC
Q 045468 202 ------LLFLKEHELLGRSTGI 217 (221)
Q Consensus 202 ------~~~~~~~~~~~~~~g~ 217 (221)
...+.+..+++++.|+
T Consensus 213 tG~~~s~e~l~~l~~~~~~~~i 234 (447)
T PLN02607 213 LGATVQRSVLEDILDFVVRKNI 234 (447)
T ss_pred cCcccCHHHHHHHHHHHHHCCC
Confidence 2357777888887764
No 158
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=47.98 E-value=99 Score=23.71 Aligned_cols=36 Identities=19% Similarity=0.034 Sum_probs=31.1
Q ss_pred hcCCcEEEEeccccHHHHHHHHHHHHHcCCeEEEEc
Q 045468 30 AAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVG 65 (221)
Q Consensus 30 ~~~g~viv~~~a~ni~Rl~~i~~~a~~~gR~~vi~~ 65 (221)
+....|++.+-++|++|-..+..-..++|.++++.-
T Consensus 77 ~~~D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvl 112 (156)
T PF02421_consen 77 EKPDLIIVVVDATNLERNLYLTLQLLELGIPVVVVL 112 (156)
T ss_dssp TSSSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEE
T ss_pred cCCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 446788888899999999999999999999888864
No 159
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=47.96 E-value=1.1e+02 Score=26.09 Aligned_cols=75 Identities=11% Similarity=0.105 Sum_probs=46.3
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCC-----ChHHHH
Q 045468 132 NEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHG-----ELLFLK 206 (221)
Q Consensus 132 ~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHg-----e~~~~~ 206 (221)
+++.++.+... . ..+.+.....|+++...+. .-.|+.+.++|++.++. +++.++++|+ ....+.
T Consensus 103 ~~~~vl~~~~~---h----~s~~~~~~~~g~~~~~v~~---~~~~~~d~~~l~~~i~~-~~~~vi~~~~~~~tG~~~~l~ 171 (371)
T PRK13520 103 EKPNIVVPESA---H----FSFDKAADMLGVELRRAPL---DDDYRVDVKAVEDLIDD-NTIGIVGIAGTTELGQVDPIP 171 (371)
T ss_pred CCceEEecCcc---h----HHHHHHHHHcCceEEEecC---CCCCcCCHHHHHHHHhh-CCEEEEEEcCCcCCcccCCHH
Confidence 46677766542 1 1233344556877652221 12467888888887753 4667888875 334577
Q ss_pred HHHHHHHhcCC
Q 045468 207 EHELLGRSTGI 217 (221)
Q Consensus 207 ~~~~~~~~~g~ 217 (221)
+.++++++.|+
T Consensus 172 ~I~~l~~~~g~ 182 (371)
T PRK13520 172 ELSKIALENGI 182 (371)
T ss_pred HHHHHHHHcCC
Confidence 88888888874
No 160
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=47.88 E-value=1.3e+02 Score=23.47 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=13.9
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHHHHHHc
Q 045468 132 NEDVILYSAKVIPGNESRVMKMLNRISEI 160 (221)
Q Consensus 132 ~~~~vI~s~~~~pg~e~~~~~~~~~l~~~ 160 (221)
+-|++||.+...| ...+++.-|..+
T Consensus 108 ~~DlvlfvG~~~~----~~~~~l~~lk~f 132 (171)
T PRK00945 108 NYDLVIFIGVTYY----YASQGLSALKHF 132 (171)
T ss_pred CcCEEEEecCCch----hHHHHHHHHhhc
Confidence 5678888776433 333444555543
No 161
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=47.86 E-value=96 Score=21.81 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=8.1
Q ss_pred HHHHHHHHHcCCCEEE
Q 045468 181 GELEEVLKLVKPQHFL 196 (221)
Q Consensus 181 ~dL~~~i~~i~Pk~ii 196 (221)
+++.+.+...+|+.+.
T Consensus 41 ~~l~~~~~~~~pd~V~ 56 (121)
T PF02310_consen 41 EELVEALRAERPDVVG 56 (121)
T ss_dssp HHHHHHHHHTTCSEEE
T ss_pred HHHHHHHhcCCCcEEE
Confidence 5555555555555433
No 162
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=47.75 E-value=1.4e+02 Score=26.24 Aligned_cols=82 Identities=22% Similarity=0.295 Sum_probs=56.4
Q ss_pred CCEEEEEecCCCCc-HHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEc----CCChHHHHH
Q 045468 133 EDVILYSAKVIPGN-ESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPI----HGELLFLKE 207 (221)
Q Consensus 133 ~~~vI~s~~~~pg~-e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPV----Hge~~~~~~ 207 (221)
|-.+.++.....-. ......+...+.+.|++.+. ...+.|.+.|+++.++++.++...=+|+ |=..-...+
T Consensus 125 G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~----l~DT~G~~~P~~v~~li~~l~~~~~~~l~~H~Hnd~GlA~A 200 (363)
T TIGR02090 125 GLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRIN----IADTVGVLTPQKMEELIKKLKENVKLPISVHCHNDFGLATA 200 (363)
T ss_pred CCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEE----EeCCCCccCHHHHHHHHHHHhcccCceEEEEecCCCChHHH
Confidence 43444444333323 34455667778888987662 5778999999999999999975432444 556667788
Q ss_pred HHHHHHhcCCC
Q 045468 208 HELLGRSTGIR 218 (221)
Q Consensus 208 ~~~~~~~~g~~ 218 (221)
++-.|.+.|..
T Consensus 201 N~laA~~aGa~ 211 (363)
T TIGR02090 201 NSIAGVKAGAE 211 (363)
T ss_pred HHHHHHHCCCC
Confidence 88888888864
No 163
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=47.74 E-value=1.6e+02 Score=25.40 Aligned_cols=78 Identities=13% Similarity=0.184 Sum_probs=46.4
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcC-----CChHHHH
Q 045468 132 NEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIH-----GELLFLK 206 (221)
Q Consensus 132 ~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVH-----ge~~~~~ 206 (221)
+++.++++....|++ ......+.+.|+++...+ ....|+.+.+++.+.++. +++.++-.| |-...+.
T Consensus 85 ~~~~vv~~~~~~~s~----~~~~~~~~~~G~~v~~v~---~~~~g~~~~~~l~~~i~~-~~~lv~i~~~~n~tG~~~~~~ 156 (379)
T TIGR03402 85 EKRHIITTAVEHPAV----LSLCQHLEKQGYKVTYLP---VDEEGRLDLEELRAAITD-DTALVSVMWANNETGTIFPIE 156 (379)
T ss_pred CCCeEEEcccccHHH----HHHHHHHHHcCCEEEEEc---cCCCCcCCHHHHHHhcCC-CcEEEEEEcccCCeeecccHH
Confidence 456777666544432 233345566788876322 122467788888777643 455554444 3444567
Q ss_pred HHHHHHHhcCC
Q 045468 207 EHELLGRSTGI 217 (221)
Q Consensus 207 ~~~~~~~~~g~ 217 (221)
+.++++++.|+
T Consensus 157 ~I~~l~~~~g~ 167 (379)
T TIGR03402 157 EIGEIAKERGA 167 (379)
T ss_pred HHHHHHHHcCC
Confidence 78888888884
No 164
>PLN02765 pyruvate kinase
Probab=47.58 E-value=27 Score=32.39 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=28.7
Q ss_pred HHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcC
Q 045468 152 KMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVK 191 (221)
Q Consensus 152 ~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~ 191 (221)
..+..|.+.|++++ ++.+| |++.+++++.++.++
T Consensus 44 e~l~~li~aGm~v~-----RlNfS-Hg~~e~h~~~i~~vR 77 (526)
T PLN02765 44 EVIEACLKAGMSVA-----RFDFS-WGDAEYHQETLENLK 77 (526)
T ss_pred HHHHHHHHCCCCEE-----EEECC-CCCHHHHHHHHHHHH
Confidence 34677888999998 89988 999999999888773
No 165
>PRK07777 aminotransferase; Validated
Probab=47.31 E-value=1.6e+02 Score=25.58 Aligned_cols=79 Identities=13% Similarity=-0.019 Sum_probs=41.0
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEc--C---CC---h
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPI--H---GE---L 202 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPV--H---ge---~ 202 (221)
+++|.|+...+..+++. ..+...|.+++..+...-...+-.+.++|...++. +++.++-. | |. .
T Consensus 107 ~~gd~vli~~p~y~~~~-------~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~ 178 (387)
T PRK07777 107 EPGDEVLLIEPYYDSYA-------AVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVTP-RTRALIVNSPHNPTGTVLTA 178 (387)
T ss_pred CCCCEEEEeCCCchhhH-------HHHHHCCCEEEEeecCCccCCCcCCHHHHHHhcCc-ccEEEEEcCCCCCCCccCCH
Confidence 47888888775444332 33445577665221111001122456666655432 45555533 3 22 2
Q ss_pred HHHHHHHHHHHhcCC
Q 045468 203 LFLKEHELLGRSTGI 217 (221)
Q Consensus 203 ~~~~~~~~~~~~~g~ 217 (221)
.++.+..+++++.|+
T Consensus 179 ~~~~~l~~~~~~~~~ 193 (387)
T PRK07777 179 AELAAIAELAVEHDL 193 (387)
T ss_pred HHHHHHHHHHHhcCc
Confidence 467778888887764
No 166
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=46.78 E-value=1.3e+02 Score=26.19 Aligned_cols=76 Identities=11% Similarity=0.106 Sum_probs=45.6
Q ss_pred CCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcC------CChHHHH
Q 045468 133 EDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIH------GELLFLK 206 (221)
Q Consensus 133 ~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVH------ge~~~~~ 206 (221)
++-||...+..+.+.. .+.+.+...|++++ .+...++.+.+++.+.+.. +++.++.+| |.-..+.
T Consensus 99 ~~eVi~~~~~~~~~~~---~~~~~~~~~g~~~v-----~v~~~~~~d~~~le~ai~~-~t~ai~~v~~~~~~~g~~~~~~ 169 (363)
T TIGR01437 99 VNEVVLPKGHNVDYGA---PVETMVRLGGGKVV-----EAGYANECSAEQLEAAITE-KTAAILYIKSHHCVQKSMLSVE 169 (363)
T ss_pred cceEEEECccchhcCC---chHHHHHhcCCeEE-----EEcCCCCCCHHHHHHhcCh-hceEEEEEecCCCCcCCcCCHH
Confidence 4466665432222221 22355666788776 4455677888888876642 445566542 2244677
Q ss_pred HHHHHHHhcCC
Q 045468 207 EHELLGRSTGI 217 (221)
Q Consensus 207 ~~~~~~~~~g~ 217 (221)
+.++++++.|+
T Consensus 170 ~i~~~a~~~gi 180 (363)
T TIGR01437 170 DAAQVAQEHNL 180 (363)
T ss_pred HHHHHHHHcCC
Confidence 88999999886
No 167
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=46.72 E-value=1.6e+02 Score=25.88 Aligned_cols=73 Identities=12% Similarity=0.170 Sum_probs=42.9
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCC------hHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGE------LLF 204 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge------~~~ 204 (221)
++||.|+.+....+++. .+.+.+...|+++. .. ..+.+++.+.++.-+++.++ +++- -.+
T Consensus 90 ~~GD~Vlv~~~~y~~~~----~~~~~~~~~g~~v~-----~~----~~d~~~l~~~i~~~~tklV~-ie~p~NPtG~v~d 155 (385)
T PRK08574 90 KAGDRVVLPMEAYGTTL----RLLKSLEKFGVKVV-----LA----YPSTEDIIEAIKEGRTKLVF-IETMTNPTLKVID 155 (385)
T ss_pred CCCCEEEEcCCCchhHH----HHHHHhhccCcEEE-----EE----CCCHHHHHHhcCccCceEEE-EECCCCCCCEecC
Confidence 48898888765433332 22233466788775 22 23566666665433455555 4332 246
Q ss_pred HHHHHHHHHhcCC
Q 045468 205 LKEHELLGRSTGI 217 (221)
Q Consensus 205 ~~~~~~~~~~~g~ 217 (221)
+.+.+++|++.|+
T Consensus 156 l~~I~~la~~~gi 168 (385)
T PRK08574 156 VPEVAKAAKELGA 168 (385)
T ss_pred HHHHHHHHHHcCC
Confidence 7788889998885
No 168
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=46.72 E-value=2e+02 Score=25.23 Aligned_cols=75 Identities=12% Similarity=0.098 Sum_probs=42.7
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEE---Ec--CCChHHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFL---PI--HGELLFL 205 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~ii---PV--Hge~~~~ 205 (221)
++||.||.+....+++ ..-+...+...|+++. .+. +...++++..++. ++|.++ |. -|...++
T Consensus 87 ~~GD~Vl~~~~~y~~t---~~~~~~~~~~~gi~v~-----~~d---~~~~e~l~~~i~~-~tklV~lesp~Np~g~~~dl 154 (377)
T TIGR01324 87 KAGDHVLMVDSAYEPT---RYFCDIVLKRMGVDIT-----YYD---PLIGEDIATLIQP-NTKVLFLEAPSSITFEIQDI 154 (377)
T ss_pred CCCCEEEEcCCCcHHH---HHHHHHHHHhcCcEEE-----EEC---CCCHHHHHHhcCC-CceEEEEECCCCCCCcHHHH
Confidence 4889988776533322 1122234567788764 221 1222444444321 456666 33 3567788
Q ss_pred HHHHHHHHhcCC
Q 045468 206 KEHELLGRSTGI 217 (221)
Q Consensus 206 ~~~~~~~~~~g~ 217 (221)
.+.+++|++.|+
T Consensus 155 ~~I~~la~~~g~ 166 (377)
T TIGR01324 155 PAIAKAARNPGI 166 (377)
T ss_pred HHHHHHHHHcCC
Confidence 899999999885
No 169
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=46.71 E-value=81 Score=23.54 Aligned_cols=54 Identities=15% Similarity=0.127 Sum_probs=36.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCC-cEEEEe-ccccHHHHHHHHHHHHHcCC-eEEEE
Q 045468 11 PGRTTSESVVKDALMRHVSAAKG-RVITTQ-FASNIHRLGSVKAAADLTGR-KLVFV 64 (221)
Q Consensus 11 ~~~~~sE~~v~~~i~~~~~~~~g-~viv~~-~a~ni~Rl~~i~~~a~~~gR-~~vi~ 64 (221)
++...+..++.+.+.+.....++ .|++-+ -....+++..++++|++.|- .+.+.
T Consensus 77 ~~~~v~~~~L~~~L~~~~~~~~~~~V~I~aD~~~~~~~vv~vmd~l~~aG~~~v~l~ 133 (141)
T PRK11267 77 GNDPVTDETMITALDALTEGKKDTTIFFRADKTVDYETLMKVMDTLHQAGYLKIGLV 133 (141)
T ss_pred CCccccHHHHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 34567778888888876654333 455555 33567888888999998887 35554
No 170
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=46.60 E-value=83 Score=25.43 Aligned_cols=15 Identities=13% Similarity=-0.059 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhcCC
Q 045468 203 LFLKEHELLGRSTGI 217 (221)
Q Consensus 203 ~~~~~~~~~~~~~g~ 217 (221)
.++.+.++++.+.|+
T Consensus 145 e~i~~ia~~l~~l~~ 159 (213)
T PRK10076 145 ENMQQALDVLIPLGI 159 (213)
T ss_pred HHHHHHHHHHHHcCC
Confidence 345566666665554
No 171
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=46.49 E-value=1.6e+02 Score=24.50 Aligned_cols=82 Identities=16% Similarity=0.347 Sum_probs=55.5
Q ss_pred CCEEEEEecCCCCc-HHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCC----EEEEcCC--ChHHH
Q 045468 133 EDVILYSAKVIPGN-ESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQ----HFLPIHG--ELLFL 205 (221)
Q Consensus 133 ~~~vI~s~~~~pg~-e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk----~iiPVHg--e~~~~ 205 (221)
|-.+.++...+.++ ......+...+.+.|++.+. ...+.|-+.|++..++++.++.. .-|=+|+ ..-..
T Consensus 122 G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~----l~DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla 197 (266)
T cd07944 122 GYEVFFNLMAISGYSDEELLELLELVNEIKPDVFY----IVDSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLA 197 (266)
T ss_pred CCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEE----EecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHH
Confidence 33444444334454 34455677777888987762 67899999999999999998422 4445555 55567
Q ss_pred HHHHHHHHhcCCC
Q 045468 206 KEHELLGRSTGIR 218 (221)
Q Consensus 206 ~~~~~~~~~~g~~ 218 (221)
.+++-.|.+.|..
T Consensus 198 ~AN~laA~~aGa~ 210 (266)
T cd07944 198 LANTLEAIELGVE 210 (266)
T ss_pred HHHHHHHHHcCCC
Confidence 7777778888864
No 172
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=46.44 E-value=2e+02 Score=25.00 Aligned_cols=68 Identities=12% Similarity=0.258 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcC----CCEEEEcCC--ChHHHHHHHHHHHhcCCC
Q 045468 147 ESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVK----PQHFLPIHG--ELLFLKEHELLGRSTGIR 218 (221)
Q Consensus 147 e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~----Pk~iiPVHg--e~~~~~~~~~~~~~~g~~ 218 (221)
......+..++...|++.+. ...+.|.+.|+++.++++.++ |..-|=+|+ ..-...+++-.|.+.|..
T Consensus 142 ~e~l~~~a~~~~~~Ga~~i~----i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~ 215 (333)
T TIGR03217 142 PEKLAEQAKLMESYGADCVY----IVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAGAT 215 (333)
T ss_pred HHHHHHHHHHHHhcCCCEEE----EccCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhCCC
Confidence 34556677788888997773 677999999999999999984 445556666 444566666677888864
No 173
>PRK08114 cystathionine beta-lyase; Provisional
Probab=46.24 E-value=1.3e+02 Score=26.75 Aligned_cols=74 Identities=12% Similarity=0.057 Sum_probs=44.1
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcC-----CChHHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIH-----GELLFL 205 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVH-----ge~~~~ 205 (221)
++||.++.+.. .|-.-..-+.+.+.+.|+++. .+. +.+.++++..++. +++.++-=| ++-.++
T Consensus 99 ~~GD~Vv~~~~---~Yg~t~~l~~~~l~~~Gi~v~-----~vd---~~d~~~l~~~l~~-~TrlV~~EtpsNp~~~v~DI 166 (395)
T PRK08114 99 EQGDHVLMTGT---AYEPTQDFCSKILSKLGVTTT-----WFD---PLIGADIAKLIQP-NTKVVFLESPGSITMEVHDV 166 (395)
T ss_pred CCCCEEEEeCC---CcHHHHHHHHHHHHhcCcEEE-----EEC---CCCHHHHHHhcCC-CceEEEEECCCCCCCEeecH
Confidence 48898887754 333333334467888999875 332 3556666555432 234444333 334578
Q ss_pred HHHHHHHHhcC
Q 045468 206 KEHELLGRSTG 216 (221)
Q Consensus 206 ~~~~~~~~~~g 216 (221)
.+.+++|++.|
T Consensus 167 ~~Ia~ia~~~g 177 (395)
T PRK08114 167 PAIVAAVRSVN 177 (395)
T ss_pred HHHHHHHHHhC
Confidence 88999999875
No 174
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=46.21 E-value=62 Score=25.17 Aligned_cols=66 Identities=17% Similarity=0.155 Sum_probs=40.0
Q ss_pred HHHHHHHHcCCeEEecCCceeeeecCCCHHHH-HHHHHHcCCCEEEEcC--CChH----HHHHHHHHHHhcCCC
Q 045468 152 KMLNRISEIGSTIVMGRNEGLHTSGHGYRGEL-EEVLKLVKPQHFLPIH--GELL----FLKEHELLGRSTGIR 218 (221)
Q Consensus 152 ~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL-~~~i~~i~Pk~iiPVH--ge~~----~~~~~~~~~~~~g~~ 218 (221)
.+...+.+.|..++.-..+..... +.+.+++ ..+++.++|..||..| ...+ .+-.....+++.|+.
T Consensus 111 ~~~~~l~~~G~~~v~w~~~~~D~~-~~~~~~i~~~~~~~~~~g~Iil~Hd~~~~~~t~~~l~~~i~~l~~~Gy~ 183 (191)
T TIGR02764 111 AVLKAAESLGYTVVHWSVDSRDWK-NPGVESIVDRVVKNTKPGDIILLHASDSAKQTVKALPTIIKKLKEKGYE 183 (191)
T ss_pred HHHHHHHHcCCeEEEecCCCCccC-CCCHHHHHHHHHhcCCCCCEEEEeCCCCcHhHHHHHHHHHHHHHHCCCE
Confidence 456788889998762111111111 3455554 4577888999999999 3332 344445566677874
No 175
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=45.94 E-value=1.6e+02 Score=24.40 Aligned_cols=68 Identities=12% Similarity=0.181 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCC---CEEEEcC--CChHHHHHHHHHHHhcCCC
Q 045468 147 ESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKP---QHFLPIH--GELLFLKEHELLGRSTGIR 218 (221)
Q Consensus 147 e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~P---k~iiPVH--ge~~~~~~~~~~~~~~g~~ 218 (221)
+.....+...+.+.|++.+. ...+.|.+.|+++.++++.++- ..-|=+| -..-...+++-.|.+.|.+
T Consensus 140 ~~~~~~~~~~~~~~G~d~i~----l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~laAi~aGa~ 212 (263)
T cd07943 140 PEELAEQAKLMESYGADCVY----VTDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLGLAVANSLAAVEAGAT 212 (263)
T ss_pred HHHHHHHHHHHHHcCCCEEE----EcCCCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcchHHHHHHHHHHhCCC
Confidence 44566677788888998773 5778999999999999999842 2233444 4666777777788888964
No 176
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=45.94 E-value=1.3e+02 Score=25.40 Aligned_cols=55 Identities=15% Similarity=0.124 Sum_probs=37.5
Q ss_pred cCCeEEecCCceeeeecCCCHHHHHHHHHHc-----CCCEEEEcCCChH-----HHHHHHHHHHhcCC
Q 045468 160 IGSTIVMGRNEGLHTSGHGYRGELEEVLKLV-----KPQHFLPIHGELL-----FLKEHELLGRSTGI 217 (221)
Q Consensus 160 ~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i-----~Pk~iiPVHge~~-----~~~~~~~~~~~~g~ 217 (221)
.|++++.. .....|+.+.++|++.+... +|+.++..|+.++ ++.+.++++++.|+
T Consensus 115 ~g~~~~~v---~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~ 179 (345)
T cd06450 115 LDVKVRLV---PVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDL 179 (345)
T ss_pred HhcCeEEe---eeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCC
Confidence 36655521 12234688999999988763 6777777776543 67888888888874
No 177
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=45.72 E-value=1.9e+02 Score=25.62 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=42.4
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEE---EcC--CChHHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFL---PIH--GELLFL 205 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~ii---PVH--ge~~~~ 205 (221)
++||.++.+.. .|-.....+...+.+.|+++. .+. ..+.++++..++. +++.++ |-+ |.-.++
T Consensus 90 ~~Gd~Il~~~~---~y~~~~~~~~~~~~~~gi~v~-----~vd---~~d~e~l~~~i~~-~tklV~lesP~NPtG~v~dl 157 (388)
T PRK08861 90 GPDDLIVAPHD---CYGGTYRLFNTRANKGDFKVQ-----FVD---QSDAAALDAALAK-KPKLILLETPSNPLVRVVDI 157 (388)
T ss_pred CCCCEEEEcCC---chHHHHHHHHHHHhcCCeEEE-----EEC---CCCHHHHHHhcCc-CCeEEEEECCCCCCCcccCH
Confidence 47888877653 333222222233445677765 232 2355666555543 567666 432 455567
Q ss_pred HHHHHHHHhcCC
Q 045468 206 KEHELLGRSTGI 217 (221)
Q Consensus 206 ~~~~~~~~~~g~ 217 (221)
.+.++++++.|+
T Consensus 158 ~~I~~la~~~gi 169 (388)
T PRK08861 158 AELCQKAKAVGA 169 (388)
T ss_pred HHHHHHHHHcCC
Confidence 788888888874
No 178
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=45.59 E-value=31 Score=31.68 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=28.0
Q ss_pred HHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHc
Q 045468 152 KMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLV 190 (221)
Q Consensus 152 ~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i 190 (221)
..+..|.+.|+.++ ++.+| |++.++++++++.+
T Consensus 18 e~l~~li~aG~~v~-----RiN~s-Hg~~~~~~~~i~~v 50 (480)
T cd00288 18 ENLKKLIKAGMNVA-----RMNFS-HGSHEYHQSRIDNV 50 (480)
T ss_pred HHHHHHHHcCCCEE-----EEEcC-CCCHHHHHHHHHHH
Confidence 35677888999998 88887 99999999988877
No 179
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=45.52 E-value=1.6e+02 Score=23.69 Aligned_cols=82 Identities=15% Similarity=0.263 Sum_probs=54.8
Q ss_pred CCEEEEEecCCCC-cHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcC---CCEEEEcCC--ChHHHH
Q 045468 133 EDVILYSAKVIPG-NESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVK---PQHFLPIHG--ELLFLK 206 (221)
Q Consensus 133 ~~~vI~s~~~~pg-~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~---Pk~iiPVHg--e~~~~~ 206 (221)
+-.+.++...... .......+...+.+.|++.+. ...+.|.+.|++..++++.++ |+.-|=+|+ ..-...
T Consensus 121 g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~----l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~ 196 (237)
T PF00682_consen 121 GYEVAFGCEDASRTDPEELLELAEALAEAGADIIY----LADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLGLAV 196 (237)
T ss_dssp TSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEE----EEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HH
T ss_pred CCceEeCccccccccHHHHHHHHHHHHHcCCeEEE----eeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccchh
Confidence 4445555544443 345567788888889998773 677999999999999999984 555555555 555677
Q ss_pred HHHHHHHhcCCC
Q 045468 207 EHELLGRSTGIR 218 (221)
Q Consensus 207 ~~~~~~~~~g~~ 218 (221)
+++-.|.+.|..
T Consensus 197 An~laA~~aGa~ 208 (237)
T PF00682_consen 197 ANALAALEAGAD 208 (237)
T ss_dssp HHHHHHHHTT-S
T ss_pred HHHHHHHHcCCC
Confidence 777788888864
No 180
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=45.06 E-value=24 Score=29.89 Aligned_cols=64 Identities=9% Similarity=0.097 Sum_probs=41.2
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEE--ecC-----CceeeeecCCCHHHHHHHHHHcCCCEEEEcCCCh
Q 045468 132 NEDVILYSAKVIPGNESRVMKMLNRISEIGSTIV--MGR-----NEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGEL 202 (221)
Q Consensus 132 ~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~--~~~-----~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~ 202 (221)
++..+.|++-..| . ..+.+... |+++. ... .....-.||.+.++..++++..++|.++.+|=..
T Consensus 201 ~g~~i~y~gDt~~-~----~~~~~~~~--~adlLi~Eat~~~~~~~~a~~~~H~t~~~a~~~a~~~~~k~lvL~H~s~ 271 (303)
T TIGR02649 201 PGKALAIFGDTGP-C----DAALDLAK--GVDVMVHEATLDITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSS 271 (303)
T ss_pred CCcEEEEecCCCC-h----HHHHHHhc--CCCEEEEeccCChhhHHHHhhcCCCCHHHHHHHHHHcCCCEEEEEEecc
Confidence 3456788876543 1 12334443 45443 111 0112346999999999999999999999999743
No 181
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=45.00 E-value=96 Score=22.38 Aligned_cols=52 Identities=12% Similarity=0.042 Sum_probs=36.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcC-CcEEEEe-ccccHHHHHHHHHHHHHcCCe-EEE
Q 045468 12 GRTTSESVVKDALMRHVSAAK-GRVITTQ-FASNIHRLGSVKAAADLTGRK-LVF 63 (221)
Q Consensus 12 ~~~~sE~~v~~~i~~~~~~~~-g~viv~~-~a~ni~Rl~~i~~~a~~~gR~-~vi 63 (221)
+...+..++.+.+.+.....+ ..|++-. -....+++..+++.|++.|-. +.+
T Consensus 64 ~~~v~~~~L~~~l~~~~~~~~~~~v~I~aD~~~~~~~vv~v~d~~~~aG~~~v~l 118 (122)
T TIGR02803 64 NDPVARETLGTALDALTEGDKDTTIFFRADKTVDYGDLMKVMNLLRQAGYLKIGL 118 (122)
T ss_pred CccCCHHHHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 445677888888887665433 3566555 335788999999999998873 444
No 182
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=44.64 E-value=46 Score=28.88 Aligned_cols=45 Identities=24% Similarity=0.506 Sum_probs=26.9
Q ss_pred cCCCCEEEEEecC-----CCCcHHHHHHHHHHHHHcC--CeEEecCCceeeeecCCCH
Q 045468 130 LTNEDVILYSAKV-----IPGNESRVMKMLNRISEIG--STIVMGRNEGLHTSGHGYR 180 (221)
Q Consensus 130 ~~~~~~vI~s~~~-----~pg~e~~~~~~~~~l~~~g--~~v~~~~~~~~h~SGHA~~ 180 (221)
+.+.|.+++.-.+ +| +.+...+.+.||.+-. .++. .+|.|||.++
T Consensus 100 Fs~ddI~~LtDt~~s~~~~P-T~~Nir~Al~wLV~~aq~gD~L-----vfHYSGHGtr 151 (362)
T KOG1546|consen 100 FSEDDILMLTDTDESPVRIP-TGKNIRRALRWLVESAQPGDSL-----VFHYSGHGTR 151 (362)
T ss_pred CChhheEEEecCCCcccccC-cHHHHHHHHHHHHhcCCCCCEE-----EEEecCCCCc
Confidence 4456666554432 22 2234556778887632 2444 6999999875
No 183
>PRK06247 pyruvate kinase; Provisional
Probab=44.37 E-value=33 Score=31.43 Aligned_cols=34 Identities=26% Similarity=0.532 Sum_probs=28.3
Q ss_pred HHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcC
Q 045468 152 KMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVK 191 (221)
Q Consensus 152 ~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~ 191 (221)
..+..|.+.|+.++ ++.+| |++.++++++++.++
T Consensus 21 e~l~~li~aGm~v~-----RlN~S-Hg~~e~~~~~i~~vr 54 (476)
T PRK06247 21 DMIRKLVEAGADVF-----RLNFS-HGDHDDHRELYKRIR 54 (476)
T ss_pred HHHHHHHHCCCCEE-----EEECC-CCCHHHHHHHHHHHH
Confidence 34677888999998 89888 999999988888773
No 184
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=44.21 E-value=2e+02 Score=24.55 Aligned_cols=61 Identities=15% Similarity=0.048 Sum_probs=38.9
Q ss_pred HHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHc-CCCEEEEcCCChH-----HHHHHHHHHHhcCC
Q 045468 154 LNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLV-KPQHFLPIHGELL-----FLKEHELLGRSTGI 217 (221)
Q Consensus 154 ~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i-~Pk~iiPVHge~~-----~~~~~~~~~~~~g~ 217 (221)
.....+.|+++...+ ....|..+.+++.+.++.- +++.+.-+|.+.+ .+.+.++++++.|.
T Consensus 94 ~~~a~~~g~~~~~v~---~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~ 160 (363)
T TIGR02326 94 VQIAEYLGIPHHVVD---TGEVEPPDVVEVEAILAADPAITHIALVHCETTTGILNPIEAVAKLAHRHGK 160 (363)
T ss_pred HHHHHHcCCceEEEe---CCCCCCCCHHHHHHHHhhCCCccEEEEEeecCCccccCcHHHHHHHHHHcCC
Confidence 355667888776211 2224667888888887652 3455666676533 36678888888874
No 185
>cd03767 SR_Res_par Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subgroup is composed of proteins similar to the E. coli resolvase found in the par region of the RP4 plasmid, which encodes a highly efficient partitioning system. This protein is part of a complex stabilization system involved in the resolution of plasmid dimers during cell division. Similar to Tn3 and other resolvases, members of this family may contain a C-terminal DNA binding domain.
Probab=43.93 E-value=1.3e+02 Score=22.38 Aligned_cols=69 Identities=16% Similarity=-0.049 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHcCCeEEecCCceeeeec-CCCHHHHHHHHHHcCCCEEEEcCCCh-------HHHHHHHHHHHhcCC
Q 045468 147 ESRVMKMLNRISEIGSTIVMGRNEGLHTSG-HGYRGELEEVLKLVKPQHFLPIHGEL-------LFLKEHELLGRSTGI 217 (221)
Q Consensus 147 e~~~~~~~~~l~~~g~~v~~~~~~~~h~SG-HA~~~dL~~~i~~i~Pk~iiPVHge~-------~~~~~~~~~~~~~g~ 217 (221)
+.....+..+....|++++..- .-+.|| +..+.++..|++.+++.-+|-|+... .++....+.+.+.|+
T Consensus 15 ~~Q~~~l~~~a~~~g~~~~~i~--~d~~SG~~~~Rp~~~~ll~~~~~gd~lvv~~ldRl~R~~~~~~~~~~~~l~~~gv 91 (146)
T cd03767 15 TRAKESLEAFATERGFYIAGFY--VENASGAKLDRPELFRLLDDAQSGDVLLVEQIDRLSRLPLDDWETLKASIAAKGL 91 (146)
T ss_pred HHHHHHHHHHHHHCCCEEEEEE--EECCcCCCCCCHHHHHHHHHhhCCCEEEEEeCccccCCCHHHHHHHHHHHHHCCc
Confidence 3444455666666787543100 122465 45688999999988887777777632 344455555666675
No 186
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=43.80 E-value=1.5e+02 Score=25.89 Aligned_cols=73 Identities=11% Similarity=0.039 Sum_probs=43.4
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEE---EcC--CChHHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFL---PIH--GELLFL 205 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~ii---PVH--ge~~~~ 205 (221)
++||.+|.+.. ..|-... .+...+.+.++.+ +...+.+++++.+.. ++|.++ |.+ |.-.++
T Consensus 90 ~~GD~VI~~~~-~yg~~~~--~~~~~~~~~~~~~----------~~~~d~~~l~~~i~~-~TklV~lesP~NPtg~~~di 155 (364)
T PRK07269 90 PVGSKVVAVRD-LYGGSFR--WFNQQEKEGRFHF----------TYANTEEELIAAIEE-DTDIVYIETPTNPLMVEFDI 155 (364)
T ss_pred CCCCEEEEecC-CcCchHH--HHHHHHhcCcEEE----------EecCCHHHHHHhcCc-CceEEEEECCCCCCCeeeCH
Confidence 38899888765 3332221 1222222223322 222466666665532 557777 888 666789
Q ss_pred HHHHHHHHhcCC
Q 045468 206 KEHELLGRSTGI 217 (221)
Q Consensus 206 ~~~~~~~~~~g~ 217 (221)
.+.+++|++.|+
T Consensus 156 ~~I~~la~~~gi 167 (364)
T PRK07269 156 EKVAKLAHAKGA 167 (364)
T ss_pred HHHHHHHHHcCC
Confidence 999999999885
No 187
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=43.39 E-value=68 Score=28.00 Aligned_cols=84 Identities=15% Similarity=0.118 Sum_probs=49.7
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceee-eecCCCHHHHHHHHHHcCCCEEEEcCCChH---HHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLH-TSGHGYRGELEEVLKLVKPQHFLPIHGELL---FLK 206 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h-~SGHA~~~dL~~~i~~i~Pk~iiPVHge~~---~~~ 206 (221)
++||.|+......+++-.... ...+...|.++..... ... -.|..+.+++.+.+..-+|+.++..|..++ ++.
T Consensus 103 ~~Gd~Vl~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~-~~~~~~~~id~~~l~~~i~~~~~~~v~~~~~~~~~~~~~~ 179 (402)
T cd00378 103 EPGDTIMGLDLSHGGHLTHGS--FTKVSASGKLFESVPY-GVDPETGLIDYDALEKMALEFKPKLIVAGASAYPRPIDFK 179 (402)
T ss_pred CCCCEEEEecCccCccccccc--cccccccceeEEEecC-CcCcccCCcCHHHHHHHHHhCCCCEEEecCcccCCCcCHH
Confidence 388998888765555422100 0123345654331110 011 146779999999887778998887665433 556
Q ss_pred HHHHHHHhcCC
Q 045468 207 EHELLGRSTGI 217 (221)
Q Consensus 207 ~~~~~~~~~g~ 217 (221)
+.++++++.|+
T Consensus 180 ~I~~l~~~~~~ 190 (402)
T cd00378 180 RFREIADEVGA 190 (402)
T ss_pred HHHHHHHhcCC
Confidence 67778888774
No 188
>PRK06225 aspartate aminotransferase; Provisional
Probab=43.33 E-value=1.7e+02 Score=25.32 Aligned_cols=78 Identities=12% Similarity=-0.065 Sum_probs=43.1
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCC-----C---hH
Q 045468 132 NEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHG-----E---LL 203 (221)
Q Consensus 132 ~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHg-----e---~~ 203 (221)
++|.|++..+..+.+ ...+...|++++..+...-...+..+.+++...+.. +++.++-+|- . ..
T Consensus 106 ~gd~vl~~~p~y~~~-------~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~-~~~~v~l~~p~NptG~~~~~~ 177 (380)
T PRK06225 106 PGDNAVTPDPGYLII-------DNFASRFGAEVIEVPIYSEECNYKLTPELVKENMDE-NTRLIYLIDPLNPLGSSYTEE 177 (380)
T ss_pred CCCEEEEcCCCCcch-------HHHHHHhCceEEeeccccccCCccCCHHHHHhhcCC-CceEEEEeCCCCCCCcCCCHH
Confidence 678887766432222 244556788776322110011235667777765532 4566665542 2 24
Q ss_pred HHHHHHHHHHhcCC
Q 045468 204 FLKEHELLGRSTGI 217 (221)
Q Consensus 204 ~~~~~~~~~~~~g~ 217 (221)
++.+.++++++.|+
T Consensus 178 ~~~~i~~~a~~~~~ 191 (380)
T PRK06225 178 EIKEFAEIARDNDA 191 (380)
T ss_pred HHHHHHHHHHHCCc
Confidence 67888888888774
No 189
>PLN02762 pyruvate kinase complex alpha subunit
Probab=43.11 E-value=35 Score=31.57 Aligned_cols=34 Identities=24% Similarity=0.382 Sum_probs=29.0
Q ss_pred HHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcC
Q 045468 152 KMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVK 191 (221)
Q Consensus 152 ~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~ 191 (221)
..+..|.+.|+.++ ++.+| |++.+++.+.++.++
T Consensus 41 e~l~~li~aGm~v~-----RlNfS-Hg~~e~h~~~i~~iR 74 (509)
T PLN02762 41 EQLEALAMGGMNVA-----RLNMC-HGTREWHRDVIRRVR 74 (509)
T ss_pred HHHHHHHHCCCCEE-----EEECC-CCCHHHHHHHHHHHH
Confidence 34677888999998 89998 999999999888774
No 190
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=42.92 E-value=98 Score=28.12 Aligned_cols=38 Identities=18% Similarity=0.016 Sum_probs=24.3
Q ss_pred HHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHhcCC
Q 045468 180 RGELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGI 217 (221)
Q Consensus 180 ~~dL~~~i~~i~Pk~iiPVHge~~~~~~~~~~~~~~g~ 217 (221)
.+.|..+++..++..++|-.|...+-..+++.+.+.|+
T Consensus 62 ~~~i~~~a~~~~~D~I~pg~g~lse~~~~a~~~e~~Gi 99 (472)
T PRK07178 62 PRRLVNLAVETGCDALHPGYGFLSENAELAEICAERGI 99 (472)
T ss_pred HHHHHHHHHHHCCCEEEeCCCCcccCHHHHHHHHHcCC
Confidence 44677777777888888866643333345556666665
No 191
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=42.81 E-value=2.3e+02 Score=24.66 Aligned_cols=68 Identities=13% Similarity=0.257 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcC----CCEEEEcCCC--hHHHHHHHHHHHhcCCC
Q 045468 147 ESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVK----PQHFLPIHGE--LLFLKEHELLGRSTGIR 218 (221)
Q Consensus 147 e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~----Pk~iiPVHge--~~~~~~~~~~~~~~g~~ 218 (221)
......+...+...|++.+. ...+.|.+.|+++.++++.++ |..-|=+|+= .-...+++-.|.+.|..
T Consensus 143 ~e~l~~~a~~~~~~Ga~~i~----i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~ 216 (337)
T PRK08195 143 PEKLAEQAKLMESYGAQCVY----VVDSAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAGAT 216 (337)
T ss_pred HHHHHHHHHHHHhCCCCEEE----eCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhCCC
Confidence 34556677788888997773 577999999999999999983 5666667773 44556666677788864
No 192
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=42.37 E-value=2.1e+02 Score=24.32 Aligned_cols=76 Identities=16% Similarity=0.108 Sum_probs=44.6
Q ss_pred CEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCC-----hHHHHHH
Q 045468 134 DVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGE-----LLFLKEH 208 (221)
Q Consensus 134 ~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge-----~~~~~~~ 208 (221)
+.+|.+....|.+-.. ...+...|++++..+ ....|+.+.++|.+.++. +++.++-.|.. ...+.+.
T Consensus 89 ~~vi~~~~~~~s~~~~----~~~~~~~G~~v~~v~---~~~~~~~d~~~l~~~l~~-~~~lv~~~~~~n~tG~~~~~~~I 160 (353)
T TIGR03235 89 KHIITSAIEHPAVLEP----IRALERNGFTVTYLP---VDESGRIDVDELADAIRP-DTLLVSIMHVNNETGSIQPIREI 160 (353)
T ss_pred CeeeEcccccHHHHHH----HHHHHhcCCEEEEEc---cCCCCcCCHHHHHHhCCC-CCEEEEEEcccCCceeccCHHHH
Confidence 5666665443332222 234556788876322 112477888888776642 45666655643 3367788
Q ss_pred HHHHHhcCC
Q 045468 209 ELLGRSTGI 217 (221)
Q Consensus 209 ~~~~~~~g~ 217 (221)
++++++.|+
T Consensus 161 ~~l~~~~~~ 169 (353)
T TIGR03235 161 AEVLEAHEA 169 (353)
T ss_pred HHHHHHcCC
Confidence 888888874
No 193
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=42.11 E-value=1.7e+02 Score=25.74 Aligned_cols=75 Identities=15% Similarity=0.106 Sum_probs=41.2
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEE---Ec--CCChHHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFL---PI--HGELLFL 205 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~ii---PV--Hge~~~~ 205 (221)
++||.++.+.. +|......+.......++++. .+. ..+.++++..++. +++.++ |- .|.-.++
T Consensus 89 ~~GD~Vl~~~~---~y~~~~~~~~~~~~~~gi~v~-----~vd---~~d~e~l~~~l~~-~tklV~l~sP~NPtG~v~di 156 (386)
T PRK08045 89 KPGDLLVAPHD---CYGGSYRLFDSLAKRGCYRVL-----FVD---QGDEQALRAALAE-KPKLVLVESPSNPLLRVVDI 156 (386)
T ss_pred CCCCEEEEcCC---CcHHHHHHHHHHHhhCCeEEE-----EeC---CCCHHHHHHhccc-CCeEEEEECCCCCCCEecCH
Confidence 48899888765 333222223333444455554 221 1356666655533 556565 32 2444567
Q ss_pred HHHHHHHHhcCC
Q 045468 206 KEHELLGRSTGI 217 (221)
Q Consensus 206 ~~~~~~~~~~g~ 217 (221)
.+.++++++.|+
T Consensus 157 ~~I~~ia~~~g~ 168 (386)
T PRK08045 157 AKICHLAREAGA 168 (386)
T ss_pred HHHHHHHHHcCC
Confidence 788888888874
No 194
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=41.91 E-value=2.2e+02 Score=24.29 Aligned_cols=78 Identities=10% Similarity=-0.056 Sum_probs=49.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHHcCCe--EEecCCceeeeecCC-CHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHH
Q 045468 136 ILYSAKVIPGNESRVMKMLNRISEIGST--IVMGRNEGLHTSGHG-YRGELEEVLKLVKPQHFLPIHGELLFLKEHELLG 212 (221)
Q Consensus 136 vI~s~~~~pg~e~~~~~~~~~l~~~g~~--v~~~~~~~~h~SGHA-~~~dL~~~i~~i~Pk~iiPVHge~~~~~~~~~~~ 212 (221)
+|+... ..| ......+...+.+.|+. +.. ...+. .+.. +..++..-++..+|+. |-+++..++.....+.|
T Consensus 141 ii~~~~-~~g-~~~~~~l~~~l~~~g~~~~i~~--~~~~~-~~~~~~~~~~l~~l~~~~~~v-ivl~~~~~~~~~il~~a 214 (362)
T cd06367 141 VVTSRD-PGY-RDFLDRVETTLEESFVGWEFQL--VLTLD-LSDDDGDARLLRQLKKLESRV-ILLYCSKEEAERIFEAA 214 (362)
T ss_pred EEEEcC-ccc-HHHHHHHHHHHHhcccceeeee--eEEec-cCCCcchHHHHHHHHhcCCcE-EEEeCCHHHHHHHHHHH
Confidence 344443 223 33445677778888876 431 11222 2232 5667777777788874 45999999999999999
Q ss_pred HhcCCCC
Q 045468 213 RSTGIRH 219 (221)
Q Consensus 213 ~~~g~~~ 219 (221)
++.|+..
T Consensus 215 ~~~g~~~ 221 (362)
T cd06367 215 ASLGLTG 221 (362)
T ss_pred HHcCCCC
Confidence 9999853
No 195
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=41.88 E-value=2.3e+02 Score=24.58 Aligned_cols=138 Identities=14% Similarity=0.152 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcccHHHHHHHHHHCC--CCCCCCCCccChhhhhhc-CCCCEEEEecCCC--ccHHHHHH
Q 045468 44 IHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDG--KAPIDPSTLVKVEDIDAY-APKDLLIVTTGSQ--AEPRAALN 118 (221)
Q Consensus 44 i~Rl~~i~~~a~~~gR~~vi~~~~~~~~~~~~~~~g--~~~~~~~~~v~~~~~~~~-~~~~~vi~~~g~~--~e~~~~l~ 118 (221)
.+-...+.+.|++.|-.++-..... .-++.+.+.| .++........++-+... ....-+++.||+. .|....+.
T Consensus 75 ~e~~~~L~~~~~~~Gi~~~stpfd~-~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStGmatl~Ei~~Av~ 153 (329)
T TIGR03569 75 EEDHRELKEYCESKGIEFLSTPFDL-ESADFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTGMATLEEIEAAVG 153 (329)
T ss_pred HHHHHHHHHHHHHhCCcEEEEeCCH-HHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEECCCCCHHHHHHHHH
Confidence 6778899999999999887766554 3444554433 222222222233333222 1123388899983 33334343
Q ss_pred HHh-cCCCCCcccCCC-CEEEE---EecCCCCcHHHHHHHHHHHHH-cCCeEEecCCceeeeecCCCHHHHHHHHHHcCC
Q 045468 119 LAS-YGGSHSLKLTNE-DVILY---SAKVIPGNESRVMKMLNRISE-IGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKP 192 (221)
Q Consensus 119 ~~~-~~~~~~~~~~~~-~~vI~---s~~~~pg~e~~~~~~~~~l~~-~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~P 192 (221)
.+. .+. +. +.+++ |+|+.|-++... +.+.+|.+ ++.+| ..|+|...-..-...-.+..
T Consensus 154 ~i~~~G~-------~~~~i~llhC~s~YP~~~~~~nL-~~I~~Lk~~f~~pV--------G~SdHt~G~~~~~aAvalGA 217 (329)
T TIGR03569 154 VLRDAGT-------PDSNITLLHCTTEYPAPFEDVNL-NAMDTLKEAFDLPV--------GYSDHTLGIEAPIAAVALGA 217 (329)
T ss_pred HHHHcCC-------CcCcEEEEEECCCCCCCcccCCH-HHHHHHHHHhCCCE--------EECCCCccHHHHHHHHHcCC
Confidence 332 221 11 33332 233333222222 33345543 45433 35888876655555555555
Q ss_pred CEEEEcC
Q 045468 193 QHFLPIH 199 (221)
Q Consensus 193 k~iiPVH 199 (221)
. +|=.|
T Consensus 218 ~-iIEkH 223 (329)
T TIGR03569 218 T-VIEKH 223 (329)
T ss_pred C-EEEeC
Confidence 5 55555
No 196
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=41.85 E-value=38 Score=31.02 Aligned_cols=32 Identities=28% Similarity=0.444 Sum_probs=26.9
Q ss_pred HHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHc
Q 045468 153 MLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLV 190 (221)
Q Consensus 153 ~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i 190 (221)
.+..|.+.|++++ ++.+| |++.++.+++++.+
T Consensus 18 ~l~~l~~~G~~~~-----R~N~s-hg~~~~~~~~i~~i 49 (473)
T TIGR01064 18 MLKKLLDAGMNVA-----RLNFS-HGSHEEHGKRIENV 49 (473)
T ss_pred HHHHHHHcCCCEE-----EEECC-CCCHHHHHHHHHHH
Confidence 4577788899998 88887 99999988888776
No 197
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=41.82 E-value=2.3e+02 Score=24.40 Aligned_cols=72 Identities=15% Similarity=0.050 Sum_probs=45.6
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHc-----CCCEEEEc--CCC--
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLV-----KPQHFLPI--HGE-- 201 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i-----~Pk~iiPV--Hge-- 201 (221)
+++|.||......|++ ...+...|.+++ .+ .+.+.++|.+.++.. +++.+++- ++.
T Consensus 124 ~~gd~vi~~~~~~~~~-------~~~~~~~~~~~~-----~~---~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G 188 (397)
T PRK06939 124 GKEDAIISDALNHASI-------IDGVRLCKAKRY-----RY---ANNDMADLEAQLKEAKEAGARHKLIATDGVFSMDG 188 (397)
T ss_pred CCCCEEEEEhhhhHHH-------HHHHHhcCCceE-----Ee---CCCCHHHHHHHHHhhhccCCCCeEEEEecCcCCCC
Confidence 4889888876543332 223444566554 22 346888998888652 56778874 332
Q ss_pred -hHHHHHHHHHHHhcCC
Q 045468 202 -LLFLKEHELLGRSTGI 217 (221)
Q Consensus 202 -~~~~~~~~~~~~~~g~ 217 (221)
...+.+.++++++.|+
T Consensus 189 ~~~~~~~l~~la~~~~~ 205 (397)
T PRK06939 189 DIAPLPEICDLADKYDA 205 (397)
T ss_pred CcCCHHHHHHHHHHhCC
Confidence 1467888889998874
No 198
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=41.52 E-value=1e+02 Score=21.90 Aligned_cols=34 Identities=21% Similarity=0.465 Sum_probs=25.6
Q ss_pred cCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEE
Q 045468 130 LTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIV 165 (221)
Q Consensus 130 ~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~ 165 (221)
++++|++|.-+ .+|+-++......+..+.|++++
T Consensus 45 ~~~~d~vi~iS--~sG~t~~~~~~~~~a~~~g~~vi 78 (128)
T cd05014 45 VTPGDVVIAIS--NSGETDELLNLLPHLKRRGAPII 78 (128)
T ss_pred CCCCCEEEEEe--CCCCCHHHHHHHHHHHHCCCeEE
Confidence 35778887777 34776776777888888898887
No 199
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=41.33 E-value=1.9e+02 Score=25.16 Aligned_cols=75 Identities=13% Similarity=0.157 Sum_probs=44.9
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEE---Ec--CCChHHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFL---PI--HGELLFL 205 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~ii---PV--Hge~~~~ 205 (221)
+++|.++.+.....++- ..+...+...|+++. .+ -+.+.+++.+.++. +++.++ |. .|...++
T Consensus 77 ~~gd~Vl~~~~~y~~~~---~~~~~~~~~~g~~~~-----~v---~~~d~~~l~~~i~~-~~~~v~~e~~~np~g~~~dl 144 (369)
T cd00614 77 KAGDHVVASDDLYGGTY---RLFERLLPKLGIEVT-----FV---DPDDPEALEAAIKP-ETKLVYVESPTNPTLKVVDI 144 (369)
T ss_pred CCCCEEEECCCCcchHH---HHHHHHHhhcCeEEE-----Ee---CCCCHHHHHHhcCC-CCeEEEEECCCCCCCeecCH
Confidence 37888777765333322 223344556787664 22 23356666666543 566666 32 3555678
Q ss_pred HHHHHHHHhcCC
Q 045468 206 KEHELLGRSTGI 217 (221)
Q Consensus 206 ~~~~~~~~~~g~ 217 (221)
.+.++++++.|+
T Consensus 145 ~~i~~la~~~g~ 156 (369)
T cd00614 145 EAIAELAHEHGA 156 (369)
T ss_pred HHHHHHHHHcCC
Confidence 899999999885
No 200
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=41.00 E-value=2.4e+02 Score=24.35 Aligned_cols=64 Identities=5% Similarity=-0.114 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCC----eEEecCCceeeeecCCCHHHHHHHHHHc---CCCEEEEcCCChHHHHHHHHHHHhcCCCC
Q 045468 149 RVMKMLNRISEIGS----TIVMGRNEGLHTSGHGYRGELEEVLKLV---KPQHFLPIHGELLFLKEHELLGRSTGIRH 219 (221)
Q Consensus 149 ~~~~~~~~l~~~g~----~v~~~~~~~~h~SGHA~~~dL~~~i~~i---~Pk~iiPVHge~~~~~~~~~~~~~~g~~~ 219 (221)
....+.+.+.+.|+ .+.. ...+ -....|....+..+ +|+.+| +++..++.....+.|++.|+..
T Consensus 170 ~~~~~~~~~~~~g~~~~~~v~~----~~~~--~~~~~d~~~~l~~ik~~~~~vIv-l~~~~~~~~~l~~qa~~~g~~~ 240 (377)
T cd06379 170 AQKRFETLLEEREIEFKIKVEK----VVEF--EPGEKNVTSLLQEAKELTSRVIL-LSASEDDAAVIYRNAGMLNMTG 240 (377)
T ss_pred HHHHHHHHHHhcCCccceeeeE----EEec--CCchhhHHHHHHHHhhcCCeEEE-EEcCHHHHHHHHHHHHHcCCCC
Confidence 34567778888888 6541 1111 11234555555444 677766 8999999999999999999853
No 201
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=40.81 E-value=2.5e+02 Score=24.56 Aligned_cols=81 Identities=16% Similarity=0.137 Sum_probs=46.0
Q ss_pred cCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCChH-----H
Q 045468 130 LTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGELL-----F 204 (221)
Q Consensus 130 ~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~~-----~ 204 (221)
++++|.++.+....|++ ...+.......|+++...+ ....|-.+.++|+..++. +++.++-.|-.++ .
T Consensus 110 ~~~gd~vl~~~~~~~s~---~~~~~~~~~~~g~~v~~v~---~~~~~~~d~~~l~~~i~~-~t~lv~l~~~~n~tG~~~~ 182 (406)
T PRK09295 110 VRAGDNIIISEMEHHAN---IVPWQMLCARVGAELRVIP---LNPDGTLQLETLPALFDE-RTRLLAITHVSNVLGTENP 182 (406)
T ss_pred CCCcCEEEECcchhhHH---HHHHHHHHHHcCcEEEEEe---cCCCCCCCHHHHHHhcCC-CcEEEEEecchhcccccCC
Confidence 35788888877543332 2222334456788776211 112344566666665532 5666666665432 5
Q ss_pred HHHHHHHHHhcCC
Q 045468 205 LKEHELLGRSTGI 217 (221)
Q Consensus 205 ~~~~~~~~~~~g~ 217 (221)
+.+.++++++.|+
T Consensus 183 ~~~i~~~~~~~~~ 195 (406)
T PRK09295 183 LAEMIALAHQHGA 195 (406)
T ss_pred HHHHHHHHHHcCC
Confidence 6677788888774
No 202
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=40.58 E-value=2.6e+02 Score=24.65 Aligned_cols=139 Identities=17% Similarity=0.127 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHHHhcC-CcEEEEecc------ccHHHHHHHHHHHHHcCCeEEEEc--ccHHHH------HHHHHHCC-
Q 045468 16 SESVVKDALMRHVSAAK-GRVITTQFA------SNIHRLGSVKAAADLTGRKLVFVG--MSLRTY------LDAAWKDG- 79 (221)
Q Consensus 16 sE~~v~~~i~~~~~~~~-g~viv~~~a------~ni~Rl~~i~~~a~~~gR~~vi~~--~~~~~~------~~~~~~~g- 79 (221)
+..+..+-+... .+.+ .+||.+.-. .-++|++++...|+++|-.++++- ..+..+ ++.+.+.|
T Consensus 12 ~~~~~~~yi~~a-~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~~lg~~~~dl~~~~~lGi 90 (357)
T PF05913_consen 12 SFEENKAYIEKA-AKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLKKLGISYDDLSFFKELGI 90 (357)
T ss_dssp -HHHHHHHHHHH-HCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHHTTT-BTTBTHHHHHHT-
T ss_pred CHHHHHHHHHHH-HHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHHHHHHHHcCC
Confidence 455666666664 3333 377766633 337899999999999999999873 222111 12233333
Q ss_pred -CCCCCCCCccChhhhhhcCCC-CEEEEecCC-CccHHHHHHHHhcCCCCCcccCCCCEEEEEec-CCC--Cc-HHHHHH
Q 045468 80 -KAPIDPSTLVKVEDIDAYAPK-DLLIVTTGS-QAEPRAALNLASYGGSHSLKLTNEDVILYSAK-VIP--GN-ESRVMK 152 (221)
Q Consensus 80 -~~~~~~~~~v~~~~~~~~~~~-~~vi~~~g~-~~e~~~~l~~~~~~~~~~~~~~~~~~vI~s~~-~~p--g~-e~~~~~ 152 (221)
.++.+ .-.+..++..+..+ --+.+...+ ..+....|.. .+ .+.........+ +-| |- +....+
T Consensus 91 ~~lRlD--~Gf~~~~ia~ls~ng~~I~LNASti~~~~l~~L~~--~~------~~~~~i~a~HNfYPr~~TGLs~~~f~~ 160 (357)
T PF05913_consen 91 DGLRLD--YGFSGEEIAKLSKNGIKIELNASTITEEELDELIK--YG------ANFSNIIACHNFYPRPYTGLSEEFFIE 160 (357)
T ss_dssp SEEEES--SS-SCHHHHHHTTT-SEEEEETTT--CCHHHHHCC--TT--------GGGEEEE---B-STT-SB-HHHHHH
T ss_pred CEEEEC--CCCCHHHHHHHHhCCCEEEEECCCCChHHHHHHHH--hc------CCHHHeEEEecccCCCCCCCCHHHHHH
Confidence 22322 22355666666655 335555444 3334444422 11 112345544444 444 42 344556
Q ss_pred HHHHHHHcCCeEE
Q 045468 153 MLNRISEIGSTIV 165 (221)
Q Consensus 153 ~~~~l~~~g~~v~ 165 (221)
.-.|+.+.|+++.
T Consensus 161 ~n~~~k~~gi~~~ 173 (357)
T PF05913_consen 161 KNQLLKEYGIKTA 173 (357)
T ss_dssp HHHHHHHTT-EEE
T ss_pred HHHHHHHCCCcEE
Confidence 6689999999885
No 203
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=40.22 E-value=2.1e+02 Score=24.06 Aligned_cols=60 Identities=23% Similarity=0.241 Sum_probs=35.5
Q ss_pred HHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEE-cCCChHHHHHHHHHHHhcCCC
Q 045468 150 VMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLP-IHGELLFLKEHELLGRSTGIR 218 (221)
Q Consensus 150 ~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiP-VHge~~~~~~~~~~~~~~g~~ 218 (221)
...+.+.|.+.|.+++ .+..++. +.+.+ +...+|..++| +||...+.-..+.++..+|++
T Consensus 24 ~~~v~~aL~~~g~~~~-----~~~~~~~---~~~~~-l~~~~~d~vf~~lhG~~ge~~~i~~~le~~gip 84 (296)
T PRK14569 24 GKAVLDSLISQGYDAV-----GVDASGK---ELVAK-LLELKPDKCFVALHGEDGENGRVSALLEMLEIK 84 (296)
T ss_pred HHHHHHHHHHcCCEEE-----EEcCCch---hHHHH-hhccCCCEEEEeCCCCCCCChHHHHHHHHcCCC
Confidence 4456777888888765 3433331 11222 22346775544 788777666667777777775
No 204
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=39.92 E-value=34 Score=32.12 Aligned_cols=65 Identities=22% Similarity=0.217 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCCeEEe-cCCceeeeecCCCHHHHHHHHHHcCC-CEEEEcCCChHHHHHHHHHHHhcCCC
Q 045468 150 VMKMLNRISEIGSTIVM-GRNEGLHTSGHGYRGELEEVLKLVKP-QHFLPIHGELLFLKEHELLGRSTGIR 218 (221)
Q Consensus 150 ~~~~~~~l~~~g~~v~~-~~~~~~h~SGHA~~~dL~~~i~~i~P-k~iiPVHge~~~~~~~~~~~~~~g~~ 218 (221)
..++++.+...-.+++- ++...+ -++..||..+++.+-| -.+|.|-|..-+......+|+++|++
T Consensus 39 ~~rllrli~~~kpDIvAvDnvyEL----~~~~~~li~il~~lP~~tkLVQVTg~~g~~~sL~~lArr~G~~ 105 (652)
T COG2433 39 LRRLLRLIWSYKPDIVAVDNVYEL----GADKRDLIRILKRLPEGTKLVQVTGRPGEQESLWELARRHGIR 105 (652)
T ss_pred HHHHHHHHHhcCCCEEEeccHHHH----hcChhHHHHHHHhCCCCceEEEEeCCCCCcchHHHHHHHhCCC
Confidence 44566666666666552 111122 2578899999999988 59999999988888999999999974
No 205
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=39.77 E-value=1.2e+02 Score=27.67 Aligned_cols=39 Identities=21% Similarity=0.060 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHhcCC
Q 045468 179 YRGELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGI 217 (221)
Q Consensus 179 ~~~dL~~~i~~i~Pk~iiPVHge~~~~~~~~~~~~~~g~ 217 (221)
+.+.|.++++..++..++|-.|...+...+++.+.+.|+
T Consensus 61 d~~~i~~~a~~~~iDaI~pg~g~lsE~~~~a~~~e~~Gi 99 (478)
T PRK08463 61 DVKRIVEIAKACGADAIHPGYGFLSENYEFAKAVEDAGI 99 (478)
T ss_pred CHHHHHHHHHHhCCCEEEECCCccccCHHHHHHHHHCCC
Confidence 456788888888888888877664444455666666675
No 206
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=39.29 E-value=1.1e+02 Score=26.08 Aligned_cols=61 Identities=16% Similarity=0.249 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhcCCcEEEEe-ccccHHHHHHHHHHHHHcCCeEEEE--cccHHHHHHHHHHCC
Q 045468 19 VVKDALMRHVSAAKGRVITTQ-FASNIHRLGSVKAAADLTGRKLVFV--GMSLRTYLDAAWKDG 79 (221)
Q Consensus 19 ~v~~~i~~~~~~~~g~viv~~-~a~ni~Rl~~i~~~a~~~gR~~vi~--~~~~~~~~~~~~~~g 79 (221)
-+++.+++.|.++.+.|.|.. --+|++=+..+++||.+-+-++++. -..+...++.+.+.+
T Consensus 134 ~IKE~vR~~I~~A~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiLLD~~~~~~Fl~Mc~~~~ 197 (284)
T PF07894_consen 134 HIKEVVRRMIQQAQKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYILLDEQNLPHFLEMCEKLG 197 (284)
T ss_pred CHHHHHHHHHHHhcceeEEEeeccccHHHHHHHHHHHHhcCCcEEEEechhcChHHHHHHHHCC
Confidence 477788888888777555555 4489999999999998777766653 333444445555543
No 207
>COG2028 Uncharacterized conserved protein [Function unknown]
Probab=39.23 E-value=16 Score=26.78 Aligned_cols=33 Identities=27% Similarity=0.476 Sum_probs=25.2
Q ss_pred HHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHH
Q 045468 181 GELEEVLKLVKPQHFLPIHGELLFLKEHELLGR 213 (221)
Q Consensus 181 ~dL~~~i~~i~Pk~iiPVHge~~~~~~~~~~~~ 213 (221)
+++++.-+-++|+.+|||-|-|-.-.+..++.+
T Consensus 111 ~nvrkY~k~vKPKrfv~V~GrYvkedeyeei~k 143 (145)
T COG2028 111 RNVRKYPKVVKPKRFVPVSGRYVKEDEYEEILK 143 (145)
T ss_pred echhhCCCcCCCceEEEecCeecchhHHHHHHh
Confidence 466777778899999999998876666655544
No 208
>PRK09206 pyruvate kinase; Provisional
Probab=39.22 E-value=44 Score=30.60 Aligned_cols=33 Identities=27% Similarity=0.443 Sum_probs=27.1
Q ss_pred HHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHc
Q 045468 152 KMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLV 190 (221)
Q Consensus 152 ~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i 190 (221)
..+..|.+.|+.+. ++.+| |++.++.+++++.+
T Consensus 18 e~l~~li~aGm~v~-----RlN~s-Hg~~~~~~~~i~~v 50 (470)
T PRK09206 18 EMLTKLLDAGMNVM-----RLNFS-HGDYAEHGQRIKNL 50 (470)
T ss_pred HHHHHHHHcCCCEE-----EEECC-CCCHHHHHHHHHHH
Confidence 34677888999998 88887 99999988888755
No 209
>PRK06348 aspartate aminotransferase; Provisional
Probab=39.12 E-value=2.6e+02 Score=24.27 Aligned_cols=96 Identities=13% Similarity=0.116 Sum_probs=49.7
Q ss_pred EEEecCCCccHHHHHHHHhcCCCCCcccCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeec-CCCHH
Q 045468 103 LIVTTGSQAEPRAALNLASYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSG-HGYRG 181 (221)
Q Consensus 103 vi~~~g~~~e~~~~l~~~~~~~~~~~~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SG-HA~~~ 181 (221)
+++++|.+.-. +.+..... ++||.|++..+..+++.. .+...|.+++..+... ..| .-+.+
T Consensus 92 i~it~G~~~al-~~~~~~~~--------~~gd~vlv~~p~y~~~~~-------~~~~~g~~~~~~~~~~--~~~~~~d~~ 153 (384)
T PRK06348 92 IMATVGACHGM-YLALQSIL--------DPGDEVIIHEPYFTPYKD-------QIEMVGGKPIILETYE--EDGFQINVK 153 (384)
T ss_pred EEEcCChHHHH-HHHHHHhc--------CCCCEEEEeCCCCcchHH-------HHHHcCCEEEEecCCc--CcCCcCCHH
Confidence 66777764322 22222222 378999888765555443 3444577665211100 012 24556
Q ss_pred HHHHHHHHcCCCEEEEcC-----C---ChHHHHHHHHHHHhcCC
Q 045468 182 ELEEVLKLVKPQHFLPIH-----G---ELLFLKEHELLGRSTGI 217 (221)
Q Consensus 182 dL~~~i~~i~Pk~iiPVH-----g---e~~~~~~~~~~~~~~g~ 217 (221)
+|+..++. +++.++-.+ | ...++.+..++|++.|+
T Consensus 154 ~l~~~~~~-~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~ 196 (384)
T PRK06348 154 KLEALITS-KTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDL 196 (384)
T ss_pred HHHHhhCc-CccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCe
Confidence 66665532 556565221 1 12367778888887764
No 210
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=39.09 E-value=2.7e+02 Score=24.50 Aligned_cols=78 Identities=15% Similarity=-0.021 Sum_probs=42.2
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCCh--------
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGEL-------- 202 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~-------- 202 (221)
++||.|++..+..+++... ....|++++...... ..-..-+.++|...++ -+++.++-++--+
T Consensus 119 ~~gd~v~v~~P~y~~~~~~-------~~~~g~~~~~~~~~~-~~~~~~d~~~l~~~~~-~~~~~~~~~nP~NPTG~~~s~ 189 (409)
T PLN00143 119 RPEANILLPRPGFPDVETY-------AIFHHLEIRHFDLLP-EKGWEVDLDAVEAIAD-ENTIAMVIINPGNPCGSVYSY 189 (409)
T ss_pred CCCCEEEEcCCCCcCHHHH-------HHHcCCEEEEEeccC-CCCCcCCHHHHHHhcc-cCCEEEEEECCCCCCCCccCH
Confidence 3789999888776665542 334577765211000 0011235666655443 2345555444332
Q ss_pred HHHHHHHHHHHhcCC
Q 045468 203 LFLKEHELLGRSTGI 217 (221)
Q Consensus 203 ~~~~~~~~~~~~~g~ 217 (221)
.++.+.+++|++.|+
T Consensus 190 ~~~~~l~~~a~~~~~ 204 (409)
T PLN00143 190 EHLNKIAETARKLGI 204 (409)
T ss_pred HHHHHHHHHHHHcCC
Confidence 367777788887663
No 211
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=38.93 E-value=2.5e+02 Score=24.03 Aligned_cols=78 Identities=18% Similarity=0.160 Sum_probs=45.2
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHc-CCCEEEEcCCC-----hHHH
Q 045468 132 NEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLV-KPQHFLPIHGE-----LLFL 205 (221)
Q Consensus 132 ~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i-~Pk~iiPVHge-----~~~~ 205 (221)
++|.++......+|. .+.......|+++...+ ....+.-+.+++...+..- +.+.+.-.|-+ .-.+
T Consensus 79 ~~~~vlv~~~~~~~~-----~~~~~~~~~g~~~~~i~---~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~~ 150 (368)
T PRK13479 79 RDGKVLVPDNGAYGA-----RIAQIAEYLGIAHVVLD---TGEDEPPDAAEVEAALAADPRITHVALVHCETTTGILNPL 150 (368)
T ss_pred CCCeEEEEeCCchHH-----HHHHHHHHcCCcEEEEE---CCCCCCCCHHHHHHHHHhCCCCcEEEEEcccCccccccCH
Confidence 667777666433332 12355566788776211 1123556788888776542 34456666643 3356
Q ss_pred HHHHHHHHhcCC
Q 045468 206 KEHELLGRSTGI 217 (221)
Q Consensus 206 ~~~~~~~~~~g~ 217 (221)
.+.++++++.|.
T Consensus 151 ~~i~~l~~~~~~ 162 (368)
T PRK13479 151 DEIAAVAKRHGK 162 (368)
T ss_pred HHHHHHHHHcCC
Confidence 677888888774
No 212
>PTZ00066 pyruvate kinase; Provisional
Probab=38.66 E-value=45 Score=30.88 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=28.5
Q ss_pred HHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHc
Q 045468 152 KMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLV 190 (221)
Q Consensus 152 ~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i 190 (221)
..+..|.+.|+++. ++.+| |++.++++++++.+
T Consensus 54 e~l~~mi~aGm~v~-----RlN~S-Hg~~e~~~~~i~~v 86 (513)
T PTZ00066 54 ETLVKLIDAGMNIC-----RFNFS-HGDHESHKKTLNNV 86 (513)
T ss_pred HHHHHHHHcCCCEE-----EEECC-CCCHHHHHHHHHHH
Confidence 45678888999998 89888 99999999988877
No 213
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=38.44 E-value=1.1e+02 Score=25.70 Aligned_cols=66 Identities=23% Similarity=0.284 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcC---CCEEEEcCC--ChHHHHHHHHHHHhcCCC
Q 045468 149 RVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVK---PQHFLPIHG--ELLFLKEHELLGRSTGIR 218 (221)
Q Consensus 149 ~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~---Pk~iiPVHg--e~~~~~~~~~~~~~~g~~ 218 (221)
....+...+...|++.+. ...+.|.+.|++...+++.++ |..-|=+|+ ..-...+++-.|.+.|..
T Consensus 152 ~~~~~~~~~~~~g~~~i~----l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~ 222 (273)
T cd07941 152 YALATLKAAAEAGADWLV----LCDTNGGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAAVEAGAT 222 (273)
T ss_pred HHHHHHHHHHhCCCCEEE----EecCCCCCCHHHHHHHHHHHHHhCCCCeeEEEecCCCCcHHHHHHHHHHcCCC
Confidence 345666777788987762 577999999999999999984 434455555 555666666677788864
No 214
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=38.39 E-value=3e+02 Score=24.84 Aligned_cols=74 Identities=15% Similarity=0.221 Sum_probs=46.2
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCC--EEEEc-----CCChH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQ--HFLPI-----HGELL 203 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk--~iiPV-----Hge~~ 203 (221)
++||.||.+.+...++- ..+...+.+.|++++ .+. +..|+..+.+.++|+ .|+.. .|.-.
T Consensus 106 ~~Gd~Vv~~~~~y~~t~---~~~~~~l~~~Gi~v~-----~vd-----d~~d~e~l~~ai~~~tklV~ie~~sNp~G~v~ 172 (436)
T PRK07812 106 GAGDHIVSSPRLYGGTY---NLFHYTLPKLGIEVS-----FVE-----DPDDLDAWRAAVRPNTKAFFAETISNPQIDVL 172 (436)
T ss_pred CCCCEEEEeCCcchHHH---HHHHHHhhcCeEEEE-----EEC-----CCCCHHHHHHhCCCCCeEEEEECCCCCCCeec
Confidence 47899888876433322 223345667888775 221 123666666667654 45422 26777
Q ss_pred HHHHHHHHHHhcCC
Q 045468 204 FLKEHELLGRSTGI 217 (221)
Q Consensus 204 ~~~~~~~~~~~~g~ 217 (221)
++.+.++++++.|+
T Consensus 173 Dl~~I~~la~~~gi 186 (436)
T PRK07812 173 DIPGVAEVAHEAGV 186 (436)
T ss_pred CHHHHHHHHHHcCC
Confidence 89999999999885
No 215
>PRK06739 pyruvate kinase; Validated
Probab=38.01 E-value=49 Score=29.06 Aligned_cols=34 Identities=32% Similarity=0.536 Sum_probs=27.5
Q ss_pred HHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcC
Q 045468 152 KMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVK 191 (221)
Q Consensus 152 ~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~ 191 (221)
..+..|.+.|+.++ ++.+| |++.+++.++++.++
T Consensus 17 e~l~~Li~aGm~v~-----RlNfS-HGs~e~h~~~i~~vR 50 (352)
T PRK06739 17 ETLAQLINNGMKIV-----RLNLS-HGTHESHKDIIRLVK 50 (352)
T ss_pred HHHHHHHHCCCCEE-----EEECC-CCCHHHHHHHHHHHH
Confidence 35677888999998 78765 999999988888774
No 216
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=37.88 E-value=3.1e+02 Score=24.82 Aligned_cols=75 Identities=20% Similarity=0.167 Sum_probs=44.3
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHH-HcCCeEEecCCceeee----ecCCCHHHHHHHHHH-----cCCCEEEEcCC
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRIS-EIGSTIVMGRNEGLHT----SGHGYRGELEEVLKL-----VKPQHFLPIHG 200 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~-~~g~~v~~~~~~~~h~----SGHA~~~dL~~~i~~-----i~Pk~iiPVHg 200 (221)
++||.|++..+..+++... +. ..|++++. +.+ ....+.++|.+.+.. .+||.++-..=
T Consensus 133 ~pGd~Vlv~~P~Y~~~~~~-------~~~~~g~~~v~-----v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP 200 (468)
T PLN02450 133 EPGDAFLLPTPYYPGFDRD-------LKWRTGVEIVP-----IHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNP 200 (468)
T ss_pred CCCCEEEECCCCCCchHHH-------HhhcCCcEEEE-----EecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecC
Confidence 4899999988877776542 22 36777762 222 113455777766654 36775543321
Q ss_pred C--------hHHHHHHHHHHHhcCC
Q 045468 201 E--------LLFLKEHELLGRSTGI 217 (221)
Q Consensus 201 e--------~~~~~~~~~~~~~~g~ 217 (221)
- ...+.+..++|++.|+
T Consensus 201 ~NPTG~~~s~e~l~~ll~~a~~~~~ 225 (468)
T PLN02450 201 SNPLGTTTTRTELNLLVDFITAKNI 225 (468)
T ss_pred CCCCCcccCHHHHHHHHHHHHHCCc
Confidence 1 2367777788877663
No 217
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=37.75 E-value=1.7e+02 Score=25.65 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=37.7
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHHcCCeEEec-C---------CceeeeecCCCHHHHHHHHHHcCCCEEEEc
Q 045468 136 ILYSAKVIPGNESRVMKMLNRISEIGSTIVMG-R---------NEGLHTSGHGYRGELEEVLKLVKPQHFLPI 198 (221)
Q Consensus 136 vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~-~---------~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPV 198 (221)
+.+-++...|-|-. -.+.++|++++-. + -.+.|+----+.+.|+.+++..+|.++||-
T Consensus 15 vmLLGSGELGKEva-----Ie~QRLG~eViAVDrY~~APAmqVAhrs~Vi~MlD~~al~avv~rekPd~IVpE 82 (394)
T COG0027 15 VMLLGSGELGKEVA-----IEAQRLGVEVIAVDRYANAPAMQVAHRSYVIDMLDGDALRAVVEREKPDYIVPE 82 (394)
T ss_pred EEEecCCccchHHH-----HHHHhcCCEEEEecCcCCChhhhhhhheeeeeccCHHHHHHHHHhhCCCeeeeh
Confidence 45555545554432 3456678877721 1 113344445689999999999999999995
No 218
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=37.60 E-value=2.8e+02 Score=25.31 Aligned_cols=64 Identities=13% Similarity=0.090 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHH-----HHhc----CCcEEEEeccccHHHHHHHHHHHHH-cCCeEEEEcccHHHHHHHHHHC
Q 045468 14 TTSESVVKDALMRH-----VSAA----KGRVITTQFASNIHRLGSVKAAADL-TGRKLVFVGMSLRTYLDAAWKD 78 (221)
Q Consensus 14 ~~sE~~v~~~i~~~-----~~~~----~g~viv~~~a~ni~Rl~~i~~~a~~-~gR~~vi~~~~~~~~~~~~~~~ 78 (221)
..+|.++...++.+ .... -..|.+-+-+.+-+|+..+++..++ .+.++.+++... ..++.+.+.
T Consensus 101 ~l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~dp~~v~~~Vk~V~~~~dvPLSIDT~dp-evleaAlea 174 (450)
T PRK04165 101 TMDDEEIDARLKKINNFQFERVGEILKLDMVALRNASGDPEKFAKAVKKVAETTDLPLILCSEDP-AVLKAALEV 174 (450)
T ss_pred CCChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEeCCCH-HHHHHHHHh
Confidence 56888888888876 3211 2477777777799999999999887 699999998886 555666553
No 219
>PLN02461 Probable pyruvate kinase
Probab=37.12 E-value=49 Score=30.62 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=27.6
Q ss_pred HHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHc
Q 045468 152 KMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLV 190 (221)
Q Consensus 152 ~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i 190 (221)
.++..|.+.|++++ ++.+| |.+.+++.++++.+
T Consensus 37 e~l~~li~aGm~v~-----RlN~S-Hg~~e~h~~~i~~v 69 (511)
T PLN02461 37 PMLEKLLRAGMNVA-----RFNFS-HGSHEYHQETLDNL 69 (511)
T ss_pred HHHHHHHHcCCCEE-----EEECC-CCCHHHHHHHHHHH
Confidence 35678888999998 88877 99999999887766
No 220
>PRK13938 phosphoheptose isomerase; Provisional
Probab=37.05 E-value=2.1e+02 Score=22.71 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=26.6
Q ss_pred cCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEE
Q 045468 130 LTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIV 165 (221)
Q Consensus 130 ~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~ 165 (221)
.+++|.+|.-|. .|+-+..........+.|++++
T Consensus 111 ~~~~DllI~iS~--SG~t~~vi~a~~~Ak~~G~~vI 144 (196)
T PRK13938 111 ARPGDTLFAIST--SGNSMSVLRAAKTARELGVTVV 144 (196)
T ss_pred CCCCCEEEEEcC--CCCCHHHHHHHHHHHHCCCEEE
Confidence 458898877774 3766666788889999999987
No 221
>PRK06354 pyruvate kinase; Provisional
Probab=36.70 E-value=49 Score=31.21 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=28.2
Q ss_pred HHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcC
Q 045468 152 KMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVK 191 (221)
Q Consensus 152 ~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~ 191 (221)
.++..|.+.|+.++ ++.+| |++.+++.++++.++
T Consensus 24 e~l~~li~aG~~v~-----RlN~s-Hg~~e~~~~~i~~ir 57 (590)
T PRK06354 24 EKLRQLIEAGATTA-----RLNFS-HGDHEEHGARIKNIR 57 (590)
T ss_pred HHHHHHHHcCCCEE-----EEECC-CCCHHHHHHHHHHHH
Confidence 35677888999998 88887 999999999887763
No 222
>PRK11024 colicin uptake protein TolR; Provisional
Probab=36.56 E-value=1.6e+02 Score=21.90 Aligned_cols=49 Identities=8% Similarity=-0.053 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHHhcCC-cEEEEe-ccccHHHHHHHHHHHHHcCC-eEEE
Q 045468 15 TSESVVKDALMRHVSAAKG-RVITTQ-FASNIHRLGSVKAAADLTGR-KLVF 63 (221)
Q Consensus 15 ~sE~~v~~~i~~~~~~~~g-~viv~~-~a~ni~Rl~~i~~~a~~~gR-~~vi 63 (221)
.+..++...+.....+.++ .|++.+ -....+++..++++|++.|- ++.+
T Consensus 85 v~~~~L~~~l~~~~~~~~~~~V~i~aD~~~~~~~vv~vmd~~k~aG~~~v~l 136 (141)
T PRK11024 85 LPEEQVVAEAKSRFKANPKTVFLIGGAKDVPYDEIIKALNLLHSAGVKSVGL 136 (141)
T ss_pred cCHHHHHHHHHHHHhhCCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 4667788888877665443 565555 34578888999999998886 3444
No 223
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=36.55 E-value=92 Score=25.56 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=22.2
Q ss_pred eec--CCCHHHHHHHHHHcCCCEEEEcCCC
Q 045468 174 TSG--HGYRGELEEVLKLVKPQHFLPIHGE 201 (221)
Q Consensus 174 ~SG--HA~~~dL~~~i~~i~Pk~iiPVHge 201 (221)
.+| |+.-..++++++..||. +-+||=
T Consensus 156 ~~g~~hvGS~~vr~~ieefqP~--l~i~GH 183 (226)
T COG2129 156 PSGYVHVGSKAVRKLIEEFQPL--LGLHGH 183 (226)
T ss_pred CCCccccchHHHHHHHHHhCCc--eEEEee
Confidence 599 99999999999999994 555663
No 224
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=36.38 E-value=1.7e+02 Score=26.13 Aligned_cols=73 Identities=12% Similarity=0.174 Sum_probs=45.2
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCC-EEEEcCC------ChHH
Q 045468 132 NEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQ-HFLPIHG------ELLF 204 (221)
Q Consensus 132 ~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk-~iiPVHg------e~~~ 204 (221)
+||-|+-|+.-.-|+-. .+-.-|.++|+++. .. - ..+++++++ .++|+ +.|-+-+ .-++
T Consensus 100 aGD~iVss~~LYGGT~~---lf~~tl~~~Gi~v~-----fv--d-~~d~~~~~~---aI~~nTkavf~EtigNP~~~v~D 165 (426)
T COG2873 100 AGDNIVSSSKLYGGTYN---LFSHTLKRLGIEVR-----FV--D-PDDPENFEA---AIDENTKAVFAETIGNPGLDVLD 165 (426)
T ss_pred CCCeeEeeccccCchHH---HHHHHHHhcCcEEE-----Ee--C-CCCHHHHHH---HhCcccceEEEEeccCCCccccC
Confidence 78887777763334333 44566889999885 21 2 223555554 44443 3333322 3458
Q ss_pred HHHHHHHHHhcCCC
Q 045468 205 LKEHELLGRSTGIR 218 (221)
Q Consensus 205 ~~~~~~~~~~~g~~ 218 (221)
..+.+++|++.|++
T Consensus 166 ie~ia~iAh~~gvp 179 (426)
T COG2873 166 IEAIAEIAHRHGVP 179 (426)
T ss_pred HHHHHHHHHHcCCc
Confidence 99999999999975
No 225
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=36.16 E-value=67 Score=21.43 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=27.6
Q ss_pred HHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEc
Q 045468 152 KMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPI 198 (221)
Q Consensus 152 ~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPV 198 (221)
+..+.|.+.|+++. .+....+.. ++..+++...++...+|+
T Consensus 16 ~ak~~L~~~g~~~~-----~i~~~~~~~-~~~~~~~~~~~g~~tvP~ 56 (80)
T COG0695 16 RAKRLLDRKGVDYE-----EIDVDDDEP-EEAREMVKRGKGQRTVPQ 56 (80)
T ss_pred HHHHHHHHcCCCcE-----EEEecCCcH-HHHHHHHHHhCCCCCcCE
Confidence 44566778888765 455566655 788888888876655553
No 226
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=35.99 E-value=1.9e+02 Score=27.76 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=35.8
Q ss_pred hcCCcEEEEeccccHHHHHHHHHHHHHcCCeEEEEcccHHHHHHHHHHCCC
Q 045468 30 AAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGK 80 (221)
Q Consensus 30 ~~~g~viv~~~a~ni~Rl~~i~~~a~~~gR~~vi~~~~~~~~~~~~~~~g~ 80 (221)
+.+..|+--.-|+|++|=.-+.--..+.|+++++. -++.+.+.+.|+
T Consensus 80 ~~~D~ivnVvDAtnLeRnLyltlQLlE~g~p~ila----LNm~D~A~~~Gi 126 (653)
T COG0370 80 GKPDLIVNVVDATNLERNLYLTLQLLELGIPMILA----LNMIDEAKKRGI 126 (653)
T ss_pred CCCCEEEEEcccchHHHHHHHHHHHHHcCCCeEEE----eccHhhHHhcCC
Confidence 44567777779999999887777788899987774 266677777663
No 227
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=35.69 E-value=1.6e+02 Score=21.14 Aligned_cols=37 Identities=16% Similarity=-0.050 Sum_probs=29.1
Q ss_pred hcCCcEEEEeccccHHHHHHHHHHHHHcCC--eEEEEcc
Q 045468 30 AAKGRVITTQFASNIHRLGSVKAAADLTGR--KLVFVGM 66 (221)
Q Consensus 30 ~~~g~viv~~~a~ni~Rl~~i~~~a~~~gR--~~vi~~~ 66 (221)
..+..|.+++...+......+.+..++.+. ++++-|.
T Consensus 38 ~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~ 76 (127)
T cd02068 38 LKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGP 76 (127)
T ss_pred cCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCc
Confidence 457899999999999999999999998763 4445453
No 228
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=35.57 E-value=2.7e+02 Score=23.44 Aligned_cols=64 Identities=14% Similarity=0.059 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHc---CCCEEEEcCCChHHHHHHHHHHHhcCCC
Q 045468 148 SRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLV---KPQHFLPIHGELLFLKEHELLGRSTGIR 218 (221)
Q Consensus 148 ~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i---~Pk~iiPVHge~~~~~~~~~~~~~~g~~ 218 (221)
.....+.+.+.+.|++++.. ..+- ....|+...+..+ +|+.+| +.+...+...+.+.+++.|++
T Consensus 152 ~~~~~~~~~~~~~g~~v~~~---~~~~---~~~~d~~~~v~~i~~~~~d~vi-~~~~~~~~~~~~~~~~~~g~~ 218 (344)
T cd06348 152 SETEIFQKALRDQGLNLVTV---QTFQ---TGDTDFQAQITAVLNSKPDLIV-ISALAADGGNLVRQLRELGYN 218 (344)
T ss_pred HHHHHHHHHHHHcCCEEEEE---EeeC---CCCCCHHHHHHHHHhcCCCEEE-ECCcchhHHHHHHHHHHcCCC
Confidence 34556778888899988721 1111 2345666666655 788766 555667888899999999875
No 229
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=35.52 E-value=72 Score=23.83 Aligned_cols=31 Identities=13% Similarity=0.100 Sum_probs=21.9
Q ss_pred CcEEEEeccccHHHHHHHHHHHHHcCCeEEE
Q 045468 33 GRVITTQFASNIHRLGSVKAAADLTGRKLVF 63 (221)
Q Consensus 33 g~viv~~~a~ni~Rl~~i~~~a~~~gR~~vi 63 (221)
..|+|+...++-++++++++.|.+.|=.+.+
T Consensus 143 d~v~ial~~~~~~~i~~ii~~~~~~~v~v~~ 173 (175)
T PF13727_consen 143 DEVIIALPWSEEEQIKRIIEELENHGVRVRV 173 (175)
T ss_dssp -EEEE--TTS-HHHHHHHHHHHHTTT-EEEE
T ss_pred CEEEEEcCccCHHHHHHHHHHHHhCCCEEEE
Confidence 5888888888889999999999988876654
No 230
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=35.38 E-value=1.5e+02 Score=20.45 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHh-cCCcEEEEec------cccHHHHHHHHHHHHHcCCeEEEEcccHHHHHHHHHHCCC
Q 045468 18 SVVKDALMRHVSA-AKGRVITTQF------ASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGK 80 (221)
Q Consensus 18 ~~v~~~i~~~~~~-~~g~viv~~~------a~ni~Rl~~i~~~a~~~gR~~vi~~~~~~~~~~~~~~~g~ 80 (221)
.++.+.+.+.+.+ ....+++.+. ++-+.-+.++++.+++.|..+++.|.+- .+.+.+...|.
T Consensus 26 ~~~~~~l~~~~~~~~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l~g~~~-~v~~~l~~~gl 94 (109)
T cd07041 26 EQLQERLLEAISRRRARGVIIDLTGVPVIDSAVARHLLRLARALRLLGARTILTGIRP-EVAQTLVELGI 94 (109)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEEEEeCCH-HHHHHHHHhCC
Confidence 4566666555543 3346777663 3447788889999999999999998763 55555555554
No 231
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=35.33 E-value=2.1e+02 Score=24.24 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=45.6
Q ss_pred CCEEEEEecCC----CCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcC------CCEEEEcCCCh
Q 045468 133 EDVILYSAKVI----PGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVK------PQHFLPIHGEL 202 (221)
Q Consensus 133 ~~~vI~s~~~~----pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~------Pk~iiPVHge~ 202 (221)
.+.+|..-... .|.+....+ .+...+.|++.+ .++ ++..+.++++.+++.+. |-.++| |.+
T Consensus 151 ~~~~IiARTDa~~~~~~~~eAi~R-a~ay~eAGAD~i-----fv~-~~~~~~~ei~~~~~~~~~~~p~~pl~~~~--~~~ 221 (285)
T TIGR02320 151 EDFMIIARVESLILGKGMEDALKR-AEAYAEAGADGI-----MIH-SRKKDPDEILEFARRFRNHYPRTPLVIVP--TSY 221 (285)
T ss_pred CCeEEEEecccccccCCHHHHHHH-HHHHHHcCCCEE-----Eec-CCCCCHHHHHHHHHHhhhhCCCCCEEEec--CCC
Confidence 45666666332 244443333 466677899887 343 46789999999999996 334334 433
Q ss_pred HHHHHHHHHHHhcCCC
Q 045468 203 LFLKEHELLGRSTGIR 218 (221)
Q Consensus 203 ~~~~~~~~~~~~~g~~ 218 (221)
+.. -.+.+.++|++
T Consensus 222 ~~~--~~~eL~~lG~~ 235 (285)
T TIGR02320 222 YTT--PTDEFRDAGIS 235 (285)
T ss_pred CCC--CHHHHHHcCCC
Confidence 332 24566667775
No 232
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=35.21 E-value=38 Score=30.85 Aligned_cols=55 Identities=25% Similarity=0.357 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHhcCCC
Q 045468 150 VMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGIR 218 (221)
Q Consensus 150 ~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~~~~~~~~~~~~~~g~~ 218 (221)
.+-+-+.|.+.|++++ . +.|||--=|-++|+-.+.+.. +|-|.. .+++-.+.|+.
T Consensus 334 v~yl~~~L~~~Gvpi~------~-~Gghav~iDa~~~lphip~~~-fpa~al------~~~ly~~~GiR 388 (467)
T TIGR02617 334 VQYLVNGLEEIGVVCQ------Q-AGGHAAFVDAGKLLPHIPADQ-FPAHAL------ACELYKVAGIR 388 (467)
T ss_pred HHHHHHHHHhCCCcEE------e-cCccEEEEehhhhCCCCChhh-CcHHHH------HHHHHHHcCcc
Confidence 4456688899999996 3 899999888888877665533 444433 34444555653
No 233
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=35.20 E-value=1e+02 Score=22.23 Aligned_cols=43 Identities=16% Similarity=0.144 Sum_probs=31.4
Q ss_pred CCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcC
Q 045468 144 PGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVK 191 (221)
Q Consensus 144 pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~ 191 (221)
|+.............+.|+.+. .++++..++.+++...++.+|
T Consensus 41 ~~S~~Y~~~k~k~~~~~Gi~~~-----~~~l~~~~~~~el~~~i~~lN 83 (117)
T PF00763_consen 41 PASISYVRSKQKAAEKLGIEFE-----LIELPEDISEEELLELIEKLN 83 (117)
T ss_dssp HHHHHHHHHHHHHHHHHT-EEE-----EEEE-TTSSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHcCCceE-----EEECCCCcCHHHHHHHHHHHh
Confidence 3333344556677888899886 788999999999999999994
No 234
>TIGR01158 SUI1_rel translation initation factor SUI1, putative, prokaryotic. This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met.
Probab=35.15 E-value=67 Score=22.77 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=17.7
Q ss_pred EEEcCCChHHHHHHHHHHHhcCCCC
Q 045468 195 FLPIHGELLFLKEHELLGRSTGIRH 219 (221)
Q Consensus 195 iiPVHge~~~~~~~~~~~~~~g~~~ 219 (221)
.|-++|++++... +++.+.||+.
T Consensus 74 ~IeiQGD~~~~v~--~~L~~~G~~~ 96 (101)
T TIGR01158 74 VIEIQGDHRDRVK--DLLEKKGFKV 96 (101)
T ss_pred EEEEeCcHHHHHH--HHHHHcCCCe
Confidence 7889999766544 7888889864
No 235
>PLN02828 formyltetrahydrofolate deformylase
Probab=35.04 E-value=2.8e+02 Score=23.41 Aligned_cols=58 Identities=9% Similarity=-0.013 Sum_probs=34.9
Q ss_pred CCCEEEEecCCCccHHHHHHHHhcCCCCCcccCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEE
Q 045468 99 PKDLLIVTTGSQAEPRAALNLASYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIV 165 (221)
Q Consensus 99 ~~~~vi~~~g~~~e~~~~l~~~~~~~~~~~~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~ 165 (221)
+.+++|++||....+.+.|.++..+. ++-.=..++|...-|. ...+...-.+.|++++
T Consensus 70 ~~riavlvSg~g~nl~~ll~~~~~g~-----l~~eI~~ViSn~~~~~----~a~~~~~A~~~gIP~~ 127 (268)
T PLN02828 70 KYKIAVLASKQDHCLIDLLHRWQDGR-----LPVDITCVISNHERGP----NTHVMRFLERHGIPYH 127 (268)
T ss_pred CcEEEEEEcCCChhHHHHHHhhhcCC-----CCceEEEEEeCCCCCC----CchHHHHHHHcCCCEE
Confidence 35788999998777777777766552 2112234667653221 1234455677888765
No 236
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=34.98 E-value=1.7e+02 Score=24.67 Aligned_cols=67 Identities=16% Similarity=0.160 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcC---CCEEEEcCC--ChHHHHHHHHHHHhcCCC
Q 045468 148 SRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVK---PQHFLPIHG--ELLFLKEHELLGRSTGIR 218 (221)
Q Consensus 148 ~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~---Pk~iiPVHg--e~~~~~~~~~~~~~~g~~ 218 (221)
.....+...+...|++.+. ...+.|.+.|.++.++++.++ |..-|=+|+ ..-...+++-.|.+.|..
T Consensus 147 ~~~~~~~~~~~~~G~~~i~----l~DT~G~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~ 218 (280)
T cd07945 147 DYVFQLVDFLSDLPIKRIM----LPDTLGILSPFETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIK 218 (280)
T ss_pred HHHHHHHHHHHHcCCCEEE----ecCCCCCCCHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCC
Confidence 3456677778888997762 577999999999999999984 333444555 555677777778888864
No 237
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=34.93 E-value=1.8e+02 Score=24.37 Aligned_cols=68 Identities=13% Similarity=0.118 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCC--EEEEcCC--ChHHHHHHHHHHHhcCCC
Q 045468 147 ESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQ--HFLPIHG--ELLFLKEHELLGRSTGIR 218 (221)
Q Consensus 147 e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk--~iiPVHg--e~~~~~~~~~~~~~~g~~ 218 (221)
......+...+.+.|++.+. ...+.|.+.|+++.++++.++.. .-|=+|+ ..-...+++-.|.+.|..
T Consensus 148 ~~~~~~~~~~~~~~Ga~~i~----l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~aN~laA~~aGa~ 219 (275)
T cd07937 148 LEYYVKLAKELEDMGADSIC----IKDMAGLLTPYAAYELVKALKKEVGLPIHLHTHDTSGLAVATYLAAAEAGVD 219 (275)
T ss_pred HHHHHHHHHHHHHcCCCEEE----EcCCCCCCCHHHHHHHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHhCCC
Confidence 44556677888889998773 67799999999999999999643 3344555 566777777788888864
No 238
>PRK05568 flavodoxin; Provisional
Probab=34.88 E-value=1.8e+02 Score=21.16 Aligned_cols=54 Identities=19% Similarity=0.290 Sum_probs=33.8
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHH
Q 045468 132 NEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKL 189 (221)
Q Consensus 132 ~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~ 189 (221)
....++|+++.+.+.+ ....+...+...|++++. ..+-..|+++.+|+++..+.
T Consensus 82 ~k~~~~f~t~G~~~~~-~~~~~~~~l~~~g~~~~~---~~~~~~~~p~~~~l~~~~~~ 135 (142)
T PRK05568 82 GKKLVLFGSYGWGDGE-WMRDWVERMEGYGANLVN---EGLIVNNTPEGEGIEKCKAL 135 (142)
T ss_pred CCEEEEEEccCCCCCh-HHHHHHHHHHHCCCEEeC---CcEEEecCCCHHHHHHHHHH
Confidence 4556788886554222 234566777888988772 12455778888888765543
No 239
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=34.86 E-value=1.6e+02 Score=25.57 Aligned_cols=17 Identities=18% Similarity=0.260 Sum_probs=10.4
Q ss_pred CCCCEEEEEecCCCCcH
Q 045468 131 TNEDVILYSAKVIPGNE 147 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e 147 (221)
++||.++...+..++++
T Consensus 103 ~~gd~vlv~~P~y~~~~ 119 (366)
T PRK01533 103 KAGDNIVTAGATFPQYR 119 (366)
T ss_pred CCCCEEEEcCCcHHHHH
Confidence 37888777765444443
No 240
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=34.86 E-value=1.6e+02 Score=20.74 Aligned_cols=14 Identities=7% Similarity=0.228 Sum_probs=7.1
Q ss_pred HHHHHHHHcCCeEE
Q 045468 152 KMLNRISEIGSTIV 165 (221)
Q Consensus 152 ~~~~~l~~~g~~v~ 165 (221)
.+.+.+.+.+.+++
T Consensus 41 ~l~~~~~~~~pdvV 54 (119)
T cd02067 41 EIVEAAKEEDADAI 54 (119)
T ss_pred HHHHHHHHcCCCEE
Confidence 33444555555555
No 241
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=34.79 E-value=71 Score=21.50 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=23.4
Q ss_pred cEEEEeccccHHHHHHHHHHHHHc---CCeEEEEcc
Q 045468 34 RVITTQFASNIHRLGSVKAAADLT---GRKLVFVGM 66 (221)
Q Consensus 34 ~viv~~~a~ni~Rl~~i~~~a~~~---gR~~vi~~~ 66 (221)
.|+.. |+.|.+-+..+++..++. +|.+++.|.
T Consensus 15 ~vi~D-~ahNp~s~~a~l~~l~~~~~~~~~i~V~G~ 49 (91)
T PF02875_consen 15 TVIDD-YAHNPDSIRALLEALKELYPKGRIIAVFGA 49 (91)
T ss_dssp EEEEE-T--SHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred EEEEE-CCCCHHHHHHHHHHHHHhccCCcEEEEEcc
Confidence 56666 999999999999999876 556666663
No 242
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=34.35 E-value=3.2e+02 Score=24.41 Aligned_cols=77 Identities=18% Similarity=0.252 Sum_probs=46.7
Q ss_pred CCCEEEEEecCCCCcHH----------------------HHHHHHHHHHHcCC-eEEecCCceeeeecC------CCHHH
Q 045468 132 NEDVILYSAKVIPGNES----------------------RVMKMLNRISEIGS-TIVMGRNEGLHTSGH------GYRGE 182 (221)
Q Consensus 132 ~~~~vI~s~~~~pg~e~----------------------~~~~~~~~l~~~g~-~v~~~~~~~~h~SGH------A~~~d 182 (221)
+..+|.+|.|.||.... .+..++..|....- .|+ .+|.+.| .+.++
T Consensus 119 ~~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~~~~vv-----LLH~CcHNPTG~D~t~~q 193 (396)
T COG1448 119 PDATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTAPEGSVV-----LLHGCCHNPTGIDPTEEQ 193 (396)
T ss_pred CCceEEeCCCCcHhHHHHHHhcCCceeeeeccccccccccHHHHHHHHHhCCCCCEE-----EEecCCCCCCCCCCCHHH
Confidence 56677788777765321 23344444544332 333 5788877 46778
Q ss_pred HHHHHHHcCCCEEEEc---------CCChHHHHHHHHHHH
Q 045468 183 LEEVLKLVKPQHFLPI---------HGELLFLKEHELLGR 213 (221)
Q Consensus 183 L~~~i~~i~Pk~iiPV---------Hge~~~~~~~~~~~~ 213 (221)
-..+++.++-+.+||+ +|...+.++...+|.
T Consensus 194 W~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~ 233 (396)
T COG1448 194 WQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAE 233 (396)
T ss_pred HHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHH
Confidence 8888888888888886 344555555555544
No 243
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=34.22 E-value=1.1e+02 Score=26.54 Aligned_cols=53 Identities=23% Similarity=0.317 Sum_probs=29.0
Q ss_pred HHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcC---C---C--EEEEcCCC-hHHHHHHHHHHHhcCC
Q 045468 155 NRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVK---P---Q--HFLPIHGE-LLFLKEHELLGRSTGI 217 (221)
Q Consensus 155 ~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~---P---k--~iiPVHge-~~~~~~~~~~~~~~g~ 217 (221)
+.|..+|+.|. ++ +|---.|.=...+..++ | + .++-+||. +++ +..++++| |+
T Consensus 94 ~~Lks~GitV~-----Ri--gG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~GwDy~~--~~~e~~k~-~~ 155 (337)
T COG2247 94 NALKSLGITVK-----RI--GGANRYETAEKVAKFFREDYPNAFKNVKVVVVYGWDYAD--ALMELMKE-GI 155 (337)
T ss_pred HHHHhCCcEEE-----Ee--cCcchHHHHHHHHHHHHhhchhhhcCeEEEEEeccccHH--HHHHHHhc-Cc
Confidence 44666777665 32 44444444455555552 1 3 67777874 333 55556665 64
No 244
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=34.20 E-value=1.3e+02 Score=19.52 Aligned_cols=33 Identities=18% Similarity=0.396 Sum_probs=24.5
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEE
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIV 165 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~ 165 (221)
+++|.+|.-+. +|+.++...+.+.+.+.|++++
T Consensus 46 ~~~d~~i~iS~--sg~t~~~~~~~~~a~~~g~~ii 78 (87)
T cd04795 46 RKGDVVIALSY--SGRTEELLAALEIAKELGIPVI 78 (87)
T ss_pred CCCCEEEEEEC--CCCCHHHHHHHHHHHHcCCeEE
Confidence 47787776663 3766666678888899999886
No 245
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=33.64 E-value=1.5e+02 Score=25.01 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=35.7
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHHcCCeEEEEcccHHHHHHHHHH
Q 045468 32 KGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWK 77 (221)
Q Consensus 32 ~g~viv~~~a~ni~Rl~~i~~~a~~~gR~~vi~~~~~~~~~~~~~~ 77 (221)
+++++|+--++.|++ ++.+...+.|..+++.+|+.+.+.+.+.+
T Consensus 6 ~~~~lITGASsGIG~--~~A~~lA~~g~~liLvaR~~~kL~~la~~ 49 (265)
T COG0300 6 GKTALITGASSGIGA--ELAKQLARRGYNLILVARREDKLEALAKE 49 (265)
T ss_pred CcEEEEECCCchHHH--HHHHHHHHCCCEEEEEeCcHHHHHHHHHH
Confidence 568899998999988 67777777899999999998777766554
No 246
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=33.58 E-value=3.2e+02 Score=23.73 Aligned_cols=99 Identities=12% Similarity=-0.015 Sum_probs=49.6
Q ss_pred CEEEEecCCCccHHHHHHHHhcCCCCCcccCCCCE--EEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCC
Q 045468 101 DLLIVTTGSQAEPRAALNLASYGGSHSLKLTNEDV--ILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHG 178 (221)
Q Consensus 101 ~~vi~~~g~~~e~~~~l~~~~~~~~~~~~~~~~~~--vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA 178 (221)
..+++++|.+.-+ +.+.+... ++||. +++-.+..++++. .....|++++..+...- .....
T Consensus 91 ~~i~it~Ga~~al-~~~~~~l~--------~~gd~~~vlv~~P~y~~~~~-------~~~~~g~~~~~v~~~~~-~~~~~ 153 (393)
T TIGR03538 91 RHVLPVNGTREAL-FAFAQAVI--------NPGQAPLVVMPNPFYQIYEG-------AALLAGAEPYFLNCTAE-NGFLP 153 (393)
T ss_pred ceEEECCCcHHHH-HHHHHHHc--------CCCCcceEEecCCCCcchHH-------HHHhcCCeEEEeecccc-CCCCC
Confidence 3466777775433 33333222 26775 5554443444433 24456777762111000 01135
Q ss_pred CHHHHHHHHHHcCCCEEEEcCCC--------hHHHHHHHHHHHhcCC
Q 045468 179 YRGELEEVLKLVKPQHFLPIHGE--------LLFLKEHELLGRSTGI 217 (221)
Q Consensus 179 ~~~dL~~~i~~i~Pk~iiPVHge--------~~~~~~~~~~~~~~g~ 217 (221)
+.++|...+.. ++|.++-..-- ..++.+.+++|++.|+
T Consensus 154 d~~~l~~~~~~-~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~ 199 (393)
T TIGR03538 154 DFDAVPESVWR-RCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGF 199 (393)
T ss_pred CHHHHHHHHhh-cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCE
Confidence 66777766543 67765533322 2356777777777663
No 247
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=33.58 E-value=2.1e+02 Score=24.92 Aligned_cols=69 Identities=6% Similarity=-0.063 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCC--CEEEEcCCChHHHHHHHHHHHhcCCCC
Q 045468 149 RVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKP--QHFLPIHGELLFLKEHELLGRSTGIRH 219 (221)
Q Consensus 149 ~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~P--k~iiPVHge~~~~~~~~~~~~~~g~~~ 219 (221)
....+.+.+.+.|.+|..... ...+.-....|.+.++..++. ...|-+++.+.+.....+-|++.|++.
T Consensus 133 ~lq~l~~~~~~~g~~V~~~~~--~~i~~~~~~~d~~~~L~~ik~~~~~~Iil~~~~~~~~~il~qa~~~gm~~ 203 (370)
T cd06389 133 TLQAVLDSAAEKKWQVTAINV--GNINNDRKDEAYRSLFQDLENKKERRVILDCERDKVNDIVDQVITIGKHV 203 (370)
T ss_pred HHHHHHHhhccCCceEEEEEe--ecCCCccchHHHHHHHHHhccccceEEEEECCHHHHHHHHHHHHHhCccc
Confidence 344677788888877651110 111222334577777777642 245566999999999999999999864
No 248
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=33.57 E-value=2.5e+02 Score=22.51 Aligned_cols=109 Identities=20% Similarity=0.243 Sum_probs=59.0
Q ss_pred CCEEEEecCCCccH-HHHHHHHhcCCCCCcccCCCC-EEEEEecCCCCcHHHHHHHHHHHHH--cCCeEEecCCceeeee
Q 045468 100 KDLLIVTTGSQAEP-RAALNLASYGGSHSLKLTNED-VILYSAKVIPGNESRVMKMLNRISE--IGSTIVMGRNEGLHTS 175 (221)
Q Consensus 100 ~~~vi~~~g~~~e~-~~~l~~~~~~~~~~~~~~~~~-~vI~s~~~~pg~e~~~~~~~~~l~~--~g~~v~~~~~~~~h~S 175 (221)
..+++++.|..-.+ .+.|..+.... .... .++|+.. .+. +.....-+.++.. .++++...-... ...
T Consensus 123 ~~~v~iagG~Giap~~s~l~~~~~~~------~~~~i~l~~~~r-~~~-~~~~~~el~~l~~~~~~~~~~~~~s~~-~~~ 193 (243)
T cd06216 123 PRLLLIAAGSGITPVMSMLRTLLARG------PTADVVLLYYAR-TRE-DVIFADELRALAAQHPNLRLHLLYTRE-ELD 193 (243)
T ss_pred CCEEEEecCccHhHHHHHHHHHHhcC------CCCCEEEEEEcC-Chh-hhHHHHHHHHHHHhCCCeEEEEEEcCC-ccC
Confidence 46788888876555 44454443321 1223 3455553 222 2222222334442 234443100000 124
Q ss_pred cCCCHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHhcCCC
Q 045468 176 GHGYRGELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGIR 218 (221)
Q Consensus 176 GHA~~~dL~~~i~~i~Pk~iiPVHge~~~~~~~~~~~~~~g~~ 218 (221)
||...+.+.+++...+ ...+-+-|...+..+..+.+++.|++
T Consensus 194 g~~~~~~l~~~~~~~~-~~~vyvcGp~~m~~~~~~~l~~~Gv~ 235 (243)
T cd06216 194 GRLSAAHLDAVVPDLA-DRQVYACGPPGFLDAAEELLEAAGLA 235 (243)
T ss_pred CCCCHHHHHHhccCcc-cCeEEEECCHHHHHHHHHHHHHCCCc
Confidence 6666666665543222 25889999999999999999999996
No 249
>PLN02651 cysteine desulfurase
Probab=33.47 E-value=3.1e+02 Score=23.57 Aligned_cols=79 Identities=9% Similarity=0.034 Sum_probs=44.9
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCC-----ChHHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHG-----ELLFL 205 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHg-----e~~~~ 205 (221)
++++.+|.+....|++-.. ..++...|+++...+ ....|-.+.++|.+.++. +++.++-.|. ....+
T Consensus 86 ~~g~~vl~~~~~h~s~~~~----~~~~~~~g~~v~~v~---~~~~~~~d~~~l~~~i~~-~t~lv~v~~~~n~tG~~~~l 157 (364)
T PLN02651 86 DKKKHVITTQTEHKCVLDS----CRHLQQEGFEVTYLP---VKSDGLVDLDELAAAIRP-DTALVSVMAVNNEIGVIQPV 157 (364)
T ss_pred CCCCEEEEcccccHHHHHH----HHHHHhcCCEEEEEc---cCCCCcCCHHHHHHhcCC-CcEEEEEECCCCCceecccH
Confidence 3678887776544443222 234556788765211 122344566666665532 3455554444 44567
Q ss_pred HHHHHHHHhcCC
Q 045468 206 KEHELLGRSTGI 217 (221)
Q Consensus 206 ~~~~~~~~~~g~ 217 (221)
.+.++++++.|+
T Consensus 158 ~~I~~~~~~~g~ 169 (364)
T PLN02651 158 EEIGELCREKKV 169 (364)
T ss_pred HHHHHHHHHcCC
Confidence 788889998884
No 250
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=33.27 E-value=1.8e+02 Score=20.81 Aligned_cols=55 Identities=24% Similarity=0.314 Sum_probs=37.2
Q ss_pred CCCEEEEEecCCCC-cHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHH
Q 045468 132 NEDVILYSAKVIPG-NESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKL 189 (221)
Q Consensus 132 ~~~~vI~s~~~~pg-~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~ 189 (221)
.....+|.+..+.+ +......+..+|...|++++. ..+...||+..+|+.+.-+.
T Consensus 80 gk~~~vfgt~g~~~~f~~~~~~~~~~l~~~g~~~v~---~~~~~~~~p~~~~~~~~~~~ 135 (140)
T TIGR01753 80 GKKVALFGSGDWGYEFCEAVDDWEERLKEAGATIIA---EGLKVDGDPEEEDLDKCREF 135 (140)
T ss_pred CCEEEEEecCCCCchhhHHHHHHHHHHHHCCCEEec---CCeeeecCCCHHHHHHHHHH
Confidence 34466777654433 345556788899999998873 24566789988888875543
No 251
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=32.94 E-value=2.8e+02 Score=23.06 Aligned_cols=72 Identities=14% Similarity=0.181 Sum_probs=42.7
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHc--CCCEEEEcCCChHHHHHHH
Q 045468 132 NEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLV--KPQHFLPIHGELLFLKEHE 209 (221)
Q Consensus 132 ~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i--~Pk~iiPVHge~~~~~~~~ 209 (221)
.-|.+||.++-.|- .++++. +.+++ ++-|++-+-+++..++..- .=|.++=+|+..|.++...
T Consensus 28 ~advviYAGSLV~~------elL~~~-~~~ae--------i~nSa~~tLeeIi~~m~~a~~~Gk~VvRLhSGDpsiYgA~ 92 (254)
T COG2875 28 KADVVIYAGSLVPP------ELLEYC-RPDAE--------IVNSASLTLEEIIDLMVDAVREGKDVVRLHSGDPSIYGAL 92 (254)
T ss_pred hCCEEEECCCcCCH------HHHhhc-CCCCE--------EEecCcCCHHHHHHHHHHHHHcCCeEEEeecCChhHHHHH
Confidence 56788888876552 222322 23443 4457777777776655544 3477888888777665433
Q ss_pred ----HHHHhcCCC
Q 045468 210 ----LLGRSTGIR 218 (221)
Q Consensus 210 ----~~~~~~g~~ 218 (221)
..+++.|++
T Consensus 93 ~EQm~~L~~~gI~ 105 (254)
T COG2875 93 AEQMRELEALGIP 105 (254)
T ss_pred HHHHHHHHHcCCC
Confidence 344455654
No 252
>PRK13413 mpi multiple promoter invertase; Provisional
Probab=32.89 E-value=2.4e+02 Score=22.10 Aligned_cols=69 Identities=14% Similarity=0.034 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHcCCeEEecCCceeeeecC--CCHHHHHHHHHHcCCCEEEEcCCCh------HHHHHHHHHHHhcCC
Q 045468 147 ESRVMKMLNRISEIGSTIVMGRNEGLHTSGH--GYRGELEEVLKLVKPQHFLPIHGEL------LFLKEHELLGRSTGI 217 (221)
Q Consensus 147 e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGH--A~~~dL~~~i~~i~Pk~iiPVHge~------~~~~~~~~~~~~~g~ 217 (221)
+.+...+..+....|+++.. ...-+.||- ..+.++..|++.++|.-+|-|+-.. .++....+.+.+.|+
T Consensus 16 ~~Q~~~l~~~~~~~g~~i~~--~~~e~~SG~~~~~R~~l~~ll~~~~~gd~lvv~~ldRl~R~~~d~~~~~~~l~~~gv 92 (200)
T PRK13413 16 ENQRFEITNFAEKNNLTIDK--WIEETISGTKSYKDRKLGKLLKKMRKGDILIVSELSRLGRNLMEIMSILNICMEKEV 92 (200)
T ss_pred HHHHHHHHHHHHHcCCcceE--EEEEecccccccccccHHHHHHHHhCCCEEEEEeCchhcCCHHHHHHHHHHHHHCCC
Confidence 34445566666666654321 012346774 2567788888888877677776642 345555555566665
No 253
>PLN02271 serine hydroxymethyltransferase
Probab=32.68 E-value=1.1e+02 Score=28.97 Aligned_cols=43 Identities=14% Similarity=0.054 Sum_probs=35.3
Q ss_pred ecCCCHHHHHHHHHHcCCCEEEEcCCChH---HHHHHHHHHHhcCC
Q 045468 175 SGHGYRGELEEVLKLVKPQHFLPIHGELL---FLKEHELLGRSTGI 217 (221)
Q Consensus 175 SGHA~~~dL~~~i~~i~Pk~iiPVHge~~---~~~~~~~~~~~~g~ 217 (221)
.|--+.++|.+++..-+||.||-=|.-++ +....+++|++.|.
T Consensus 282 ~g~IDyd~lek~a~~~rPKLII~g~Saypr~~D~~~i~eIAdevGA 327 (586)
T PLN02271 282 TGYIDYDKLEEKALDFRPKILICGGSSYPREWDYARFRQIADKCGA 327 (586)
T ss_pred cCccCHHHHHHHhhhcCCeEEEECchhccCcCCHHHHHHHHHHcCC
Confidence 46678999999999999999999887777 46677788888873
No 254
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=32.67 E-value=1.7e+02 Score=25.72 Aligned_cols=65 Identities=9% Similarity=0.033 Sum_probs=43.0
Q ss_pred HHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHc---CCCEEEEcCCChHHHHHHHHHHHhcCCC
Q 045468 150 VMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLV---KPQHFLPIHGELLFLKEHELLGRSTGIR 218 (221)
Q Consensus 150 ~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i---~Pk~iiPVHge~~~~~~~~~~~~~~g~~ 218 (221)
...+...+.+.|+++.... .+.. +=....|+..++..+ +|+.|| +++...+.....+.|++.|+.
T Consensus 193 ~~~~~~~l~~~gi~i~~~~--~~~~-~~~~~~d~~~~l~~i~~~~~dvIi-l~~~~~~~~~il~qa~~~g~~ 260 (410)
T cd06363 193 LQLFSELIANTGICIAYQG--LIPL-DTDPETDYQQILKQINQTKVNVIV-VFASRQPAEAFFNSVIQQNLT 260 (410)
T ss_pred HHHHHHHHHHCCeEEEEEE--EecC-CCchHHHHHHHHHHHhcCCCeEEE-EEcChHHHHHHHHHHHhcCCC
Confidence 4567788888998776210 1111 101456777777666 466554 788888888999999999884
No 255
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=32.55 E-value=2.5e+02 Score=22.16 Aligned_cols=85 Identities=20% Similarity=0.129 Sum_probs=49.2
Q ss_pred CCEEEEEecCC---CC--cHHHHHHHHHHHHHcCCeEE-ec-C------CceeeeecCCCHHHHHHHHHHcCCCEEEEcC
Q 045468 133 EDVILYSAKVI---PG--NESRVMKMLNRISEIGSTIV-MG-R------NEGLHTSGHGYRGELEEVLKLVKPQHFLPIH 199 (221)
Q Consensus 133 ~~~vI~s~~~~---pg--~e~~~~~~~~~l~~~g~~v~-~~-~------~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVH 199 (221)
.|.+++.+... |. ++ --..+.+|..+.|++.+ .. . ..+--+.|||+.+++.+-++....+..+| .
T Consensus 15 ~~illl~g~e~~~~p~~~~e-~a~~vld~a~~~gv~~iitLgG~~~~~~~trp~V~~~at~~el~~~l~~~g~~~~~~-~ 92 (188)
T TIGR00162 15 TDLIILVGNTQSLSPEGQYE-LVNAIIDVAKKYGARMIYTLGGYGVGKLVEEPYVYGAATSPELVEELKEHGVKFREP-G 92 (188)
T ss_pred CCEEEEEcCCCCCChhhHHH-HHHHHHHHHHHcCCCEEEEecCCcCCCCCCCCceEEEeCCHHHHHHHHhcCCeeecC-C
Confidence 56777777642 21 23 34568899999998444 21 1 11233788899888888887765544344 2
Q ss_pred CCh-HHHHHHHHHHHhcCCCC
Q 045468 200 GEL-LFLKEHELLGRSTGIRH 219 (221)
Q Consensus 200 ge~-~~~~~~~~~~~~~g~~~ 219 (221)
|.. --.--....+.+.|++.
T Consensus 93 g~i~G~~glLl~~a~~~gi~a 113 (188)
T TIGR00162 93 GGIIGASGLLLGVSELEGIPG 113 (188)
T ss_pred CccccHHHHHHHHHHHCCCCe
Confidence 211 12233334556667653
No 256
>PLN02623 pyruvate kinase
Probab=32.52 E-value=63 Score=30.38 Aligned_cols=34 Identities=32% Similarity=0.571 Sum_probs=28.0
Q ss_pred HHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcC
Q 045468 152 KMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVK 191 (221)
Q Consensus 152 ~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~ 191 (221)
.++..|.+.|+.++ ++.+| |++.+++++.++.++
T Consensus 126 e~l~~li~aGmnv~-----RlNfS-Hg~~e~h~~~i~~vr 159 (581)
T PLN02623 126 EMIWKLAEAGMNVA-----RLNMS-HGDHASHQKVIDLVK 159 (581)
T ss_pred HHHHHHHHcCCCEE-----EEECC-CCCHHHHHHHHHHHH
Confidence 45678888999998 88887 999998888877664
No 257
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=32.25 E-value=63 Score=29.62 Aligned_cols=33 Identities=30% Similarity=0.475 Sum_probs=26.9
Q ss_pred HHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHc
Q 045468 152 KMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLV 190 (221)
Q Consensus 152 ~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i 190 (221)
..+..|.+.|+.++ ++.| +|++.+++...++.+
T Consensus 21 e~l~~li~aG~nV~-----RlNf-SHG~~e~h~~~i~~v 53 (477)
T COG0469 21 EMLEKLIEAGMNVV-----RLNF-SHGDHEEHKKRIDNV 53 (477)
T ss_pred HHHHHHHHccCcEE-----EEec-CCCChHHHHHHHHHH
Confidence 34577888999998 7765 599999999988876
No 258
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=32.07 E-value=1.6e+02 Score=25.51 Aligned_cols=74 Identities=16% Similarity=0.265 Sum_probs=45.3
Q ss_pred ccCCCCEE-EEEecCCCCcHHHHHHHHHHHHHcCCeEEecC---CceeeeecCC--CHHHHHHHHHHcCCCEEEEcCCCh
Q 045468 129 KLTNEDVI-LYSAKVIPGNESRVMKMLNRISEIGSTIVMGR---NEGLHTSGHG--YRGELEEVLKLVKPQHFLPIHGEL 202 (221)
Q Consensus 129 ~~~~~~~v-I~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~---~~~~h~SGHA--~~~dL~~~i~~i~Pk~iiPVHge~ 202 (221)
+++++|.+ |+|-+..........+....|+..|.++.-.. ....-.||.. -.+||..+...-+.|.++++=|.+
T Consensus 6 ~lk~gd~I~iIaPSs~~~~~~~~~~a~~~L~~~G~~v~~~~~i~~~~~~~a~s~~~R~~dL~~af~d~~vk~Il~~rGGy 85 (313)
T COG1619 6 KLKEGDEIGIIAPSSGATATDALKRAIQRLENLGFEVVFGEHILRRDQYFAGSDEERAEDLMSAFSDPDVKAILCVRGGY 85 (313)
T ss_pred ccCCCCEEEEEecCcccchHHHHHHHHHHHHHcCCEEEechhhhhccccccCCHHHHHHHHHHHhcCCCCeEEEEcccCC
Confidence 46678887 33333222223445677788889998887321 1123346655 345666666655778999998875
No 259
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=31.93 E-value=3.1e+02 Score=23.02 Aligned_cols=72 Identities=18% Similarity=0.208 Sum_probs=44.2
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHc----CCCEEEEcC-----CC
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLV----KPQHFLPIH-----GE 201 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i----~Pk~iiPVH-----ge 201 (221)
++||.|+.+.+..+. ...-+...|+++. .+ ...+.+++.++++.. +++.++--| |-
T Consensus 83 ~~gd~Vl~~~~~~~~-------~~~~~~~~g~~~~-----~~---~~~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~ 147 (349)
T cd06454 83 GKGDLIISDSLNHAS-------IIDGIRLSGAKKR-----IF---KHNDMEDLEKLLREARRPYGKKLIVTEGVYSMDGD 147 (349)
T ss_pred CCCCEEEEehhhhHH-------HHHHHHHcCCceE-----Ee---cCCCHHHHHHHHHHhhccCCCeEEEEeccccCCCC
Confidence 378888776542221 2223455788765 22 246889999999875 345444222 44
Q ss_pred hHHHHHHHHHHHhcCC
Q 045468 202 LLFLKEHELLGRSTGI 217 (221)
Q Consensus 202 ~~~~~~~~~~~~~~g~ 217 (221)
...+.+.++++++.|+
T Consensus 148 ~~~~~~i~~~~~~~~~ 163 (349)
T cd06454 148 IAPLPELVDLAKKYGA 163 (349)
T ss_pred ccCHHHHHHHHHHcCC
Confidence 4567888889998885
No 260
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=31.80 E-value=1.8e+02 Score=26.59 Aligned_cols=41 Identities=15% Similarity=0.106 Sum_probs=28.7
Q ss_pred cCCCHHHHHHHHHHcCCCEEEE---cCCChHHHHHHHHHHHhcC
Q 045468 176 GHGYRGELEEVLKLVKPQHFLP---IHGELLFLKEHELLGRSTG 216 (221)
Q Consensus 176 GHA~~~dL~~~i~~i~Pk~iiP---VHge~~~~~~~~~~~~~~g 216 (221)
|--+.++|.+++...+|+.+|- +-+-.-++.+.++++++.|
T Consensus 168 g~iD~d~Le~~l~~~~pklIv~~~S~~s~~~D~a~i~~ia~~~g 211 (475)
T PLN03226 168 GLIDYDKLEKKAMLFRPKLIIAGASAYPRDWDYARMRKIADKVG 211 (475)
T ss_pred CCcCHHHHHHHHhhcCCeEEEEecCcCCCccCHHHHHHHHHHcC
Confidence 4459999999998889986644 1222334567778888887
No 261
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=31.78 E-value=3.3e+02 Score=23.36 Aligned_cols=45 Identities=16% Similarity=0.104 Sum_probs=35.4
Q ss_pred ecCCCHHHHHHHHHHcCC---CEEEEcCCChHHHHHHHHHHHhcCCCC
Q 045468 175 SGHGYRGELEEVLKLVKP---QHFLPIHGELLFLKEHELLGRSTGIRH 219 (221)
Q Consensus 175 SGHA~~~dL~~~i~~i~P---k~iiPVHge~~~~~~~~~~~~~~g~~~ 219 (221)
+|+-+.+.+.+++..+.+ ...+-+=|-..++.+..+.+.+.|+++
T Consensus 186 ~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp~~m~~~v~~~L~~~Gv~~ 233 (352)
T TIGR02160 186 SGRLDGERLAALLDSLIDVDRADEWFLCGPQAMVDDAEQALTGLGVPA 233 (352)
T ss_pred cCccCHHHHHHHHHhccCcccCCEEEEECCHHHHHHHHHHHHHcCCCH
Confidence 566666778888876532 257888999999999999999999975
No 262
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=31.42 E-value=3.5e+02 Score=23.51 Aligned_cols=97 Identities=9% Similarity=-0.070 Sum_probs=50.4
Q ss_pred EEEEecCCCccHHHHHHHHhcCCCCCcccCC---CCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCC
Q 045468 102 LLIVTTGSQAEPRAALNLASYGGSHSLKLTN---EDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHG 178 (221)
Q Consensus 102 ~vi~~~g~~~e~~~~l~~~~~~~~~~~~~~~---~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA 178 (221)
.++++.|.+.-+...+.-+ . ++ +|.|+...+..++++.. ....|++++..+...- ....-
T Consensus 92 ~i~it~G~~~al~~~~~~l-~--------~~~~~gd~vlv~~P~y~~~~~~-------~~~~g~~~~~vp~~~~-~~~~~ 154 (396)
T PRK09147 92 QVLPVNGSREALFAFAQTV-I--------DRDGPGPLVVCPNPFYQIYEGA-------ALLAGAEPYFLNCDPA-NNFAP 154 (396)
T ss_pred eEEECCChHHHHHHHHHHH-c--------CCCCCCCEEEEcCCCccchHHH-------HHhcCCEEEEeccCcc-ccCcc
Confidence 4666777654333333322 2 25 77888876655554432 3446777763221100 01135
Q ss_pred CHHHHHHHHHHcCCCEEEEcCCCh--------HHHHHHHHHHHhcC
Q 045468 179 YRGELEEVLKLVKPQHFLPIHGEL--------LFLKEHELLGRSTG 216 (221)
Q Consensus 179 ~~~dL~~~i~~i~Pk~iiPVHge~--------~~~~~~~~~~~~~g 216 (221)
+.++|...+.. +++.++-..=-+ .++.+.++++++.|
T Consensus 155 d~~~l~~~~~~-~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~ 199 (396)
T PRK09147 155 DFDAVPAEVWA-RTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYG 199 (396)
T ss_pred CHHHHHHHHhh-ccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcC
Confidence 56666554432 667655433222 26777777777766
No 263
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=31.37 E-value=3e+02 Score=24.44 Aligned_cols=72 Identities=15% Similarity=0.178 Sum_probs=43.3
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCC-EEEEc------CCChH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQ-HFLPI------HGELL 203 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk-~iiPV------Hge~~ 203 (221)
++||.++.+.+. |-.-..-+..++.+.|+++. .+ +..|+..+-+.++|+ .+|-+ ..+-+
T Consensus 92 ~~Gd~iv~~~~~---Y~~t~~~~~~~l~~~gv~v~-----~~------d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~ 157 (386)
T PF01053_consen 92 KPGDHIVASDDL---YGGTYRLLEELLPRFGVEVT-----FV------DPTDLEALEAALRPNTKLVFLESPSNPTLEVP 157 (386)
T ss_dssp -TTBEEEEESSS---SHHHHHHHHHCHHHTTSEEE-----EE------STTSHHHHHHHHCTTEEEEEEESSBTTTTB--
T ss_pred ccCCceEecCCc---cCcchhhhhhhhcccCcEEE-----Ee------CchhHHHHHhhccccceEEEEEcCCCcccccc
Confidence 478888888763 33333345567888999875 22 234555555555553 23322 13567
Q ss_pred HHHHHHHHHHhcC
Q 045468 204 FLKEHELLGRSTG 216 (221)
Q Consensus 204 ~~~~~~~~~~~~g 216 (221)
++.+.+++|++.|
T Consensus 158 Dl~~i~~~a~~~g 170 (386)
T PF01053_consen 158 DLEAIAKLAKEHG 170 (386)
T ss_dssp -HHHHHHHHHHTT
T ss_pred cHHHHHHHHHHhC
Confidence 9999999999998
No 264
>cd02696 MurNAc-LAA N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs
Probab=30.99 E-value=1.7e+02 Score=22.09 Aligned_cols=49 Identities=16% Similarity=0.306 Sum_probs=36.3
Q ss_pred HHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCCh
Q 045468 150 VMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGEL 202 (221)
Q Consensus 150 ~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~ 202 (221)
...+...|...|++++..++.. ...+.++-..+++..+|..+|-+|...
T Consensus 31 a~~l~~~L~~~G~~v~~~r~~~----~~~~l~~r~~~an~~~~d~~islH~na 79 (172)
T cd02696 31 ALKLAKLLEAAGAKVVLTRDDD----TFVSLSERVAIANRAGADLFISIHANA 79 (172)
T ss_pred HHHHHHHHHHCCCEEEEEecCC----CCCCHHHHHHHHHhcCCCEEEEEeecC
Confidence 4457778888899987443322 146778888888888999999999753
No 265
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=30.91 E-value=85 Score=28.04 Aligned_cols=42 Identities=21% Similarity=0.217 Sum_probs=34.4
Q ss_pred ecCCCHHHHHHHHHHcCCCEEEEcCCChH---HHHHHHHHHHhcC
Q 045468 175 SGHGYRGELEEVLKLVKPQHFLPIHGELL---FLKEHELLGRSTG 216 (221)
Q Consensus 175 SGHA~~~dL~~~i~~i~Pk~iiPVHge~~---~~~~~~~~~~~~g 216 (221)
.|--+.+++.+++...+||.+|-=-.-|+ +...++++|.+.|
T Consensus 150 t~~IDyD~~~k~a~e~kPK~ii~G~SaY~r~id~~~~reIad~VG 194 (413)
T COG0112 150 TGLIDYDEVEKLAKEVKPKLIIAGGSAYSRPIDFKRFREIADEVG 194 (413)
T ss_pred cCccCHHHHHHHHHHhCCCEEEECccccccccCHHHHHHHHHHhC
Confidence 48889999999999999999998777666 4556666777877
No 266
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=30.89 E-value=3.4e+02 Score=24.26 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=45.3
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEc-----CCChHHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPI-----HGELLFL 205 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPV-----Hge~~~~ 205 (221)
++||.++...+..+|+ ...+.+.+...|+++. .. -+.+.++|.+.++. +++.++.. .|.-.++
T Consensus 95 ~~Gd~Vl~~~~~Y~~t---~~~~~~~l~~~gi~v~-----~~---d~~d~e~le~ai~~-~tklV~lesp~NPtG~v~dl 162 (425)
T PRK06084 95 EAGDNIVSVAKLYGGT---YNLLAHTLPRIGIETR-----FA---AHDDIAALEALIDE-RTKAVFCESIGNPAGNIIDI 162 (425)
T ss_pred CCCCEEEEeCCCcchH---HHHHHHhcccceeEEE-----EE---CCCCHHHHHHHhcc-CCcEEEEeCCCCCCCeecCH
Confidence 3788888776533332 2233344445676653 12 12467777776653 56777754 4555578
Q ss_pred HHHHHHHHhcCC
Q 045468 206 KEHELLGRSTGI 217 (221)
Q Consensus 206 ~~~~~~~~~~g~ 217 (221)
.+.+++|++.|+
T Consensus 163 ~~I~~la~~~~i 174 (425)
T PRK06084 163 QALADAAHRHGV 174 (425)
T ss_pred HHHHHHHHHcCC
Confidence 889999998885
No 267
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=30.79 E-value=2.3e+02 Score=21.22 Aligned_cols=50 Identities=22% Similarity=0.142 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEecccc------HHHHHHHHHHHHHcCCeEEE
Q 045468 14 TTSESVVKDALMRHVSAAKGRVITTQFASN------IHRLGSVKAAADLTGRKLVF 63 (221)
Q Consensus 14 ~~sE~~v~~~i~~~~~~~~g~viv~~~a~n------i~Rl~~i~~~a~~~gR~~vi 63 (221)
...+.+..+.+.+.+.+++..|.+..+.-+ ...+...+.-|.+.|-.+-+
T Consensus 16 ~~~~~~~~~~i~~~I~~A~~~I~i~~~~~~~~~~~~~~~l~~~L~~a~~rGv~V~i 71 (176)
T cd00138 16 RVGGRSDLDALLEAISNAKKSIYIASFYLSPLITEYGPVILDALLAAARRGVKVRI 71 (176)
T ss_pred CcCcchHHHHHHHHHHhhheEEEEEEeEecccccccchHHHHHHHHHHHCCCEEEE
Confidence 346678888888888887777776664422 44554444444445775554
No 268
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=30.72 E-value=1.9e+02 Score=25.91 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=41.8
Q ss_pred CCCCEEEEEecCCCC-cHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEE
Q 045468 131 TNEDVILYSAKVIPG-NESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFL 196 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg-~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~ii 196 (221)
..+.+|-.++. | +.+-...+...|++.|.+++ -||+.|+ ...-+.+||+.=.=.-++
T Consensus 183 ~~kp~I~iTmf---GvTTp~V~~~~~~Le~~G~Ev~-----VFHAtG~-GG~aME~Li~~G~~~~Vl 240 (403)
T PF06792_consen 183 EDKPLIGITMF---GVTTPCVDAIRERLEEEGYEVL-----VFHATGT-GGRAMERLIREGQFDGVL 240 (403)
T ss_pred CCCcEEEEECC---CCcHHHHHHHHHHHHhcCCeEE-----EEcCCCC-chHHHHHHHHcCCcEEEE
Confidence 34557777776 6 56777888999999999998 7999997 556677777654333343
No 269
>PLN02483 serine palmitoyltransferase
Probab=30.63 E-value=2.7e+02 Score=25.45 Aligned_cols=72 Identities=24% Similarity=0.296 Sum_probs=44.5
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHc----CC-------CEEEEc-
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLV----KP-------QHFLPI- 198 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i----~P-------k~iiPV- 198 (221)
++||.||.... .+ ..+..-....|+++. .+. |.+.++|.++++.. +| +.+|-+
T Consensus 183 ~~Gd~Vi~d~~---~h----~s~~~~~~~~Ga~v~-----~~~---~~d~~~le~~l~~~i~~~~p~t~~p~~k~livve 247 (489)
T PLN02483 183 GKGGLIISDSL---NH----NSIVNGARGSGATIR-----VFQ---HNTPSHLEEVLREQIAEGQPRTHRPWKKIIVIVE 247 (489)
T ss_pred CCCCEEEEcch---hh----HHHHHHHHHcCCeEE-----EEe---CCCHHHHHHHHHhhhhccccccccCCceEEEEEC
Confidence 47887775443 22 223344566788775 232 66788998887632 23 335544
Q ss_pred -----CCChHHHHHHHHHHHhcCC
Q 045468 199 -----HGELLFLKEHELLGRSTGI 217 (221)
Q Consensus 199 -----Hge~~~~~~~~~~~~~~g~ 217 (221)
-|....+.+.++++++.|+
T Consensus 248 ~v~s~~G~~~~l~~I~~la~~~~~ 271 (489)
T PLN02483 248 GIYSMEGELCKLPEIVAVCKKYKA 271 (489)
T ss_pred CCCCCCCcccCHHHHHHHHHHcCC
Confidence 3445678888999998874
No 270
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=30.06 E-value=2e+02 Score=23.93 Aligned_cols=39 Identities=13% Similarity=0.140 Sum_probs=23.9
Q ss_pred HHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEc
Q 045468 150 VMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPI 198 (221)
Q Consensus 150 ~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPV 198 (221)
...+.+.|.+.|.++. .+... +++...+...+|..++|.
T Consensus 25 ~~~i~~al~~~g~~v~-----~i~~~-----~~~~~~~~~~~~D~v~~~ 63 (304)
T PRK01372 25 GAAVLAALREAGYDAH-----PIDPG-----EDIAAQLKELGFDRVFNA 63 (304)
T ss_pred HHHHHHHHHHCCCEEE-----EEecC-----cchHHHhccCCCCEEEEe
Confidence 3567778888888775 22211 244555556678877775
No 271
>cd04469 S1_Hex1 S1_Hex1: Hex1, S1-like RNA-binding domain. Hex1 protein is the major component of the Woronin body in filamentous fungi. The Woronin body is a dense vesicle and plays a vital role in filamentous fungi cell integrity. When cell damage occurs, Woronin bodies seal the septal pore to prevent further cytoplasmic bleeding. Hex1 protein self-assembles to form the solid core of the Woronin body vesicle. The Hex1 sequence and structure are similar to eukaryotic initiation factor 5A (eIF5A), suggesting they share a common ancestor during evolution. All members of the EF superfamily to which Hex1 belongs, contain an S1 domain, which has been shown to bind RNA or single-stranded DNA and often interacts with the ribosome.
Probab=29.94 E-value=1.1e+02 Score=20.41 Aligned_cols=26 Identities=15% Similarity=0.111 Sum_probs=20.0
Q ss_pred CC-HHHHHHHHHHHHHhcCCcEEEEec
Q 045468 15 TS-ESVVKDALMRHVSAAKGRVITTQF 40 (221)
Q Consensus 15 ~s-E~~v~~~i~~~~~~~~g~viv~~~ 40 (221)
.+ +.++-+.|++.|.+.+|-++|++-
T Consensus 30 lP~~~~l~~~I~~~f~~gk~~v~VtVl 56 (75)
T cd04469 30 VIDQSNLWTRLKTAFESGRGSVRVLVV 56 (75)
T ss_pred CCCcchHHHHHHHHHHCCCCcEEEEEE
Confidence 44 889999999999776656666663
No 272
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=29.58 E-value=38 Score=28.80 Aligned_cols=66 Identities=17% Similarity=0.250 Sum_probs=44.6
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEe-c------CCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCChHH
Q 045468 132 NEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVM-G------RNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGELLF 204 (221)
Q Consensus 132 ~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~-~------~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~~~ 204 (221)
+|..++||+-+.|-.+.. +.. .|+++.. + ..+..+..||...+|..++.+..+.|.+|..|=-.+.
T Consensus 189 ~G~~v~ysGDT~p~~~~~-----~~a--~~aDlLiHEat~~~~~~~~a~~~~HsT~~eAa~iA~~A~vk~LiLtH~s~ry 261 (292)
T COG1234 189 KGKSVVYSGDTRPCDELI-----DLA--KGADLLIHEATFEDDLEDLANEGGHSTAEEAAEIAKEAGVKKLILTHFSPRY 261 (292)
T ss_pred CCcEEEEECCCCCCHHHH-----HHh--cCCCEEEEeccCCchhhhHHhhcCCCCHHHHHHHHHHcCCCeEEEEeecccc
Confidence 456899999875542221 111 4555441 1 1122566679999999999999999999999975443
No 273
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=29.58 E-value=2e+02 Score=20.19 Aligned_cols=34 Identities=18% Similarity=0.471 Sum_probs=22.9
Q ss_pred cCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEE
Q 045468 130 LTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIV 165 (221)
Q Consensus 130 ~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~ 165 (221)
++++|++|+-+ .+|+..+.......+.+.|++++
T Consensus 51 ~~~~d~vi~is--~sg~~~~~~~~~~~ak~~g~~vi 84 (131)
T PF01380_consen 51 LDPDDLVIIIS--YSGETRELIELLRFAKERGAPVI 84 (131)
T ss_dssp CSTTEEEEEEE--SSSTTHHHHHHHHHHHHTTSEEE
T ss_pred ccccceeEeee--ccccchhhhhhhHHHHhcCCeEE
Confidence 34677666666 34666665666678888888887
No 274
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=29.49 E-value=3.3e+02 Score=22.60 Aligned_cols=67 Identities=15% Similarity=0.048 Sum_probs=45.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeccc-----------cHHHHHHHHHHHHHc-CCeEEEEcccHHHHHHHHHHCC
Q 045468 12 GRTTSESVVKDALMRHVSAAKGRVITTQFAS-----------NIHRLGSVKAAADLT-GRKLVFVGMSLRTYLDAAWKDG 79 (221)
Q Consensus 12 ~~~~sE~~v~~~i~~~~~~~~g~viv~~~a~-----------ni~Rl~~i~~~a~~~-gR~~vi~~~~~~~~~~~~~~~g 79 (221)
+...+..++.+...+.+++.-..|=|.+.++ -++|+..+++.+++. +.++.++.... ..++.+.+.|
T Consensus 17 ~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~~~-~vi~~al~~G 95 (257)
T TIGR01496 17 GRFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDTYRA-EVARAALEAG 95 (257)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCCH-HHHHHHHHcC
Confidence 3445777888888887654223444443333 466999999999887 88888988775 5666666655
No 275
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=29.47 E-value=1.9e+02 Score=23.77 Aligned_cols=79 Identities=16% Similarity=0.100 Sum_probs=44.8
Q ss_pred CCCEEEEEecCCCCc-HHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHH--HHHcCCCEEEEcCCCh--HHHH
Q 045468 132 NEDVILYSAKVIPGN-ESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEV--LKLVKPQHFLPIHGEL--LFLK 206 (221)
Q Consensus 132 ~~~~vI~s~~~~pg~-e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~--i~~i~Pk~iiPVHge~--~~~~ 206 (221)
.=|.+.+..+..... ..+....+.++.+.|.-- .+.+|+|. .+.+..+ ...+.|..+-.-..-. ....
T Consensus 99 ~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir------~iGvs~~~-~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~ 171 (283)
T PF00248_consen 99 YIDLLLLHWPDPSEDALEEVWEALEELKKEGKIR------HIGVSNFS-PEQLEAALKIGSIPPDVVQINYNLLNRREEE 171 (283)
T ss_dssp SEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEE------EEEEES---HHHHHHHHTCTSS-ESEEEEE-BTTBHBGGH
T ss_pred chhccccccccccccccchhhhhhhhcccccccc------cccccccc-ccccccccccccccccccccccccccccccc
Confidence 445666665543333 445667778888888632 58899999 9999999 4444555443333322 3444
Q ss_pred HHHHHHHhcCC
Q 045468 207 EHELLGRSTGI 217 (221)
Q Consensus 207 ~~~~~~~~~g~ 217 (221)
...+.+++.|+
T Consensus 172 ~l~~~~~~~gi 182 (283)
T PF00248_consen 172 GLLEFCREHGI 182 (283)
T ss_dssp HHHHHHHHTT-
T ss_pred ccccccccccc
Confidence 55556666665
No 276
>PF07614 DUF1577: Protein of unknown function (DUF1577); InterPro: IPR011471 This is a family of hypothetical proteins found in Leptospira interrogans.
Probab=29.37 E-value=86 Score=26.23 Aligned_cols=47 Identities=9% Similarity=-0.004 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHHHHcCCeEEEEcc
Q 045468 17 ESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGM 66 (221)
Q Consensus 17 E~~v~~~i~~~~~~~~g~viv~~~a~ni~Rl~~i~~~a~~~gR~~vi~~~ 66 (221)
+..+.+-.+++-.+.++.+.|..|.+++++-.++. ++++|.+++-+-
T Consensus 129 kv~f~d~~~~lk~~~pd~~~I~~f~s~~~~k~elV---Kkt~K~i~I~dt 175 (256)
T PF07614_consen 129 KVNFEDYKRKLKKDYPDSKLIDVFGSGLSDKFELV---KKTKKIIYIEDT 175 (256)
T ss_pred EEhHHHHHHHhcccCCCcEEEEecccccchhhHHH---HhhCCeEEecCC
Confidence 34455555555455678999999999999976665 799999998543
No 277
>cd00474 SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation factor 1) fold is found in eukaryotes, archaea, and some bacteria and is thought to play an important role in accurate initiator codon recognition during translation initiation. This fold, which includes two antiparallel alpha helices packed against the same side of a five-strand beta sheet, is structurally similar to other RNA-binding domains suggesting that SUI1/eIF1 may bind RNA. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown.
Probab=29.27 E-value=1e+02 Score=20.60 Aligned_cols=24 Identities=8% Similarity=0.079 Sum_probs=18.6
Q ss_pred EEEEcCCChHHHHHHHHHHHhcCCCC
Q 045468 194 HFLPIHGELLFLKEHELLGRSTGIRH 219 (221)
Q Consensus 194 ~iiPVHge~~~~~~~~~~~~~~g~~~ 219 (221)
..|-+.|++++.. ++++.+.||++
T Consensus 48 ~~I~lQGD~r~~v--~~~L~~~g~~~ 71 (77)
T cd00474 48 EVIELQGDQRKKI--KEFLIKMGFAK 71 (77)
T ss_pred CEEEEeCcHHHHH--HHHHHHcCCCH
Confidence 5889999966654 48888899865
No 278
>PTZ00376 aspartate aminotransferase; Provisional
Probab=29.16 E-value=3.9e+02 Score=23.37 Aligned_cols=79 Identities=11% Similarity=-0.026 Sum_probs=43.3
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCC-EEE--EcCC-------
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQ-HFL--PIHG------- 200 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk-~ii--PVHg------- 200 (221)
++||.|++-.+..|++.. .+...|++++..+... .....-+.+++...++...|+ .++ |-.-
T Consensus 122 ~~Gd~Vlv~~P~y~~~~~-------~~~~~G~~~~~v~l~~-~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~ 193 (404)
T PTZ00376 122 PAGTTVYVSNPTWPNHVN-------IFKSAGLNVKEYRYYD-PKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVDP 193 (404)
T ss_pred CCCCEEEEcCCCchhHHH-------HHHHcCCceeeccccC-cccCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCC
Confidence 489999988887776643 3445677665211100 001233566666666554442 222 3221
Q ss_pred ChHHHHHHHHHHHhcCC
Q 045468 201 ELLFLKEHELLGRSTGI 217 (221)
Q Consensus 201 e~~~~~~~~~~~~~~g~ 217 (221)
...++.+.+++|+++|+
T Consensus 194 s~~~~~~l~~~a~~~~~ 210 (404)
T PTZ00376 194 TEEQWKEIADVMKRKNL 210 (404)
T ss_pred CHHHHHHHHHHHHhCCc
Confidence 34467777777777763
No 279
>PRK05968 hypothetical protein; Provisional
Probab=28.83 E-value=4e+02 Score=23.38 Aligned_cols=74 Identities=15% Similarity=0.164 Sum_probs=44.2
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEE---EcC--CChHHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFL---PIH--GELLFL 205 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~ii---PVH--ge~~~~ 205 (221)
++||.+|.+....+++ ...+.+.+...|+++. .+. ..+.++++..+. +++.++ |.+ +...++
T Consensus 100 ~~Gd~Vl~~~~~y~~t---~~~~~~~~~~~G~~v~-----~vd---~~d~~~l~~~i~--~tklV~ie~pt~~~~~~~dl 166 (389)
T PRK05968 100 EPGDRIVAVRHVYPDA---FRLFETILKRMGVEVD-----YVD---GRDEEAVAKALP--GAKLLYLESPTSWVFELQDV 166 (389)
T ss_pred CCCCEEEEeCCCchHH---HHHHHHHHHHcCceEE-----EeC---CCCHHHHHHhcc--cCCEEEEECCCCCCCcHHHH
Confidence 4899988877533332 2223345677898775 222 126666666542 345443 222 244688
Q ss_pred HHHHHHHHhcCC
Q 045468 206 KEHELLGRSTGI 217 (221)
Q Consensus 206 ~~~~~~~~~~g~ 217 (221)
.+.++++++.|+
T Consensus 167 ~~i~~la~~~gi 178 (389)
T PRK05968 167 AALAALAKRHGV 178 (389)
T ss_pred HHHHHHHHHcCC
Confidence 889999999885
No 280
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=28.58 E-value=3.1e+02 Score=22.00 Aligned_cols=28 Identities=11% Similarity=0.127 Sum_probs=24.3
Q ss_pred CCEEEEcCCChHHHHHHHHHHHhcCCCC
Q 045468 192 PQHFLPIHGELLFLKEHELLGRSTGIRH 219 (221)
Q Consensus 192 Pk~iiPVHge~~~~~~~~~~~~~~g~~~ 219 (221)
+...+-+-|...+..+..+.++++|+++
T Consensus 208 ~~~~v~icGp~~m~~~v~~~l~~~G~~~ 235 (247)
T cd06184 208 ADADFYLCGPVPFMQAVREGLKALGVPA 235 (247)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCH
Confidence 4567888999999999999999999974
No 281
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.12 E-value=2.5e+02 Score=25.41 Aligned_cols=61 Identities=16% Similarity=0.243 Sum_probs=42.5
Q ss_pred EEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCH-----HHHHHHHHHcCCCEEEEcCCC
Q 045468 136 ILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR-----GELEEVLKLVKPQHFLPIHGE 201 (221)
Q Consensus 136 vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~-----~dL~~~i~~i~Pk~iiPVHge 201 (221)
=+|.+|..-..-.-...-.+.+.+-+++++ .+.+||.-.. +|++.+.+.++|..+|-|---
T Consensus 158 P~ygsyte~dpv~ia~egv~~fKke~fdvI-----IvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDa 223 (483)
T KOG0780|consen 158 PFYGSYTEADPVKIASEGVDRFKKENFDVI-----IVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDA 223 (483)
T ss_pred eeEecccccchHHHHHHHHHHHHhcCCcEE-----EEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEec
Confidence 366665422222223345678888899998 7889997554 578999999999988888643
No 282
>PRK05764 aspartate aminotransferase; Provisional
Probab=27.88 E-value=4e+02 Score=23.01 Aligned_cols=74 Identities=15% Similarity=0.035 Sum_probs=40.5
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeee----cCCCHHHHHHHHHHcCCCEEEEcC-----CC
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTS----GHGYRGELEEVLKLVKPQHFLPIH-----GE 201 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~S----GHA~~~dL~~~i~~i~Pk~iiPVH-----ge 201 (221)
+++|.|++..+..+++.. .+...|++++ .+... .-.+.++|...++. +.+.++-.| |-
T Consensus 113 ~~gd~vl~~~p~y~~~~~-------~~~~~g~~~~-----~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~NPtG~ 179 (393)
T PRK05764 113 DPGDEVIIPAPYWVSYPE-------MVKLAGGVPV-----FVPTGEENGFKLTVEQLEAAITP-KTKALILNSPSNPTGA 179 (393)
T ss_pred CCCCEEEecCCCCcchHH-------HHHHcCCEEE-----EEecCcccCCcCCHHHHHHhhCc-cceEEEEECCCCCCCc
Confidence 378888887765444322 2345688776 22221 12345666555421 345555333 22
Q ss_pred ---hHHHHHHHHHHHhcCC
Q 045468 202 ---LLFLKEHELLGRSTGI 217 (221)
Q Consensus 202 ---~~~~~~~~~~~~~~g~ 217 (221)
..++.+.++++++.|+
T Consensus 180 ~~~~~~~~~l~~~a~~~~~ 198 (393)
T PRK05764 180 VYSPEELEAIADVAVEHDI 198 (393)
T ss_pred ccCHHHHHHHHHHHHHCCc
Confidence 2357778888888773
No 283
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.86 E-value=3.4e+02 Score=22.18 Aligned_cols=14 Identities=0% Similarity=-0.107 Sum_probs=6.9
Q ss_pred HHHHHHHHHHcCCe
Q 045468 150 VMKMLNRISEIGST 163 (221)
Q Consensus 150 ~~~~~~~l~~~g~~ 163 (221)
....++.+...+++
T Consensus 45 ~~~~l~~~~~~~~d 58 (294)
T cd06316 45 QVADIETTISQKPD 58 (294)
T ss_pred HHHHHHHHHHhCCC
Confidence 34445555555554
No 284
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=27.86 E-value=2e+02 Score=24.45 Aligned_cols=46 Identities=24% Similarity=0.164 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHHHhcCCc--EEEEeccccHHHHHHHHHHHHHcCC
Q 045468 14 TTSESVVKDALMRHVSAAKGR--VITTQFASNIHRLGSVKAAADLTGR 59 (221)
Q Consensus 14 ~~sE~~v~~~i~~~~~~~~g~--viv~~~a~ni~Rl~~i~~~a~~~gR 59 (221)
+.|.+|=.+-+..+++..+|+ |++.+.+.|.+-..++.+.|++.|=
T Consensus 53 ~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Ga 100 (299)
T COG0329 53 TLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGA 100 (299)
T ss_pred hcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCC
Confidence 345555444455544445555 8888899999999999999999987
No 285
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=27.63 E-value=3.4e+02 Score=22.32 Aligned_cols=63 Identities=13% Similarity=0.104 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHH
Q 045468 148 SRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGELLFLKEHELLG 212 (221)
Q Consensus 148 ~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~~~~~~~~~~~ 212 (221)
.+....-+-..+.|++++..+. .++ .|.|..+|.+-|.+.+.++.=|=--|.-+.+.+...+.
T Consensus 140 ee~~~A~~i~~~aGAdFVKTST-Gf~-~~gAT~edv~lM~~~vg~~vgvKaSGGIrt~eda~~~i 202 (228)
T COG0274 140 EEKRKACEIAIEAGADFVKTST-GFS-AGGATVEDVKLMKETVGGRVGVKASGGIRTAEDAKAMI 202 (228)
T ss_pred HHHHHHHHHHHHhCCCEEEcCC-CCC-CCCCCHHHHHHHHHHhccCceeeccCCcCCHHHHHHHH
Confidence 3335666777888999996655 343 89999999999999999988887777766665555543
No 286
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=27.62 E-value=4.2e+02 Score=23.20 Aligned_cols=17 Identities=18% Similarity=0.126 Sum_probs=11.7
Q ss_pred cHHHHHHHHHHHHHcCC
Q 045468 43 NIHRLGSVKAAADLTGR 59 (221)
Q Consensus 43 ni~Rl~~i~~~a~~~gR 59 (221)
|.+=-..+.+-|++.|-
T Consensus 88 p~e~~~~Lke~a~~~Gi 104 (347)
T COG2089 88 PLEWHAQLKEYARKRGI 104 (347)
T ss_pred CHHHHHHHHHHHHHcCe
Confidence 45556667777887775
No 287
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=27.52 E-value=4e+02 Score=22.96 Aligned_cols=75 Identities=15% Similarity=0.075 Sum_probs=46.3
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeee----cCCCHHHHHHHHHHc------CCCEEEEc--
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTS----GHGYRGELEEVLKLV------KPQHFLPI-- 198 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~S----GHA~~~dL~~~i~~i------~Pk~iiPV-- 198 (221)
+++|.++......+ .+...+...|++++ .+... +.-+.++|++.++.. +++.++-.
T Consensus 88 ~~gd~Vl~~~~~h~-------s~~~~~~~~g~~~~-----~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p 155 (370)
T TIGR02539 88 KEGDWVVLDGLAHY-------TSYVAAERAGLNVK-----EVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHV 155 (370)
T ss_pred CCCCEEEECCcccH-------HHHHHHHHcCCEEE-----EEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECC
Confidence 37787776443211 12234666788776 33222 445889998888642 56677732
Q ss_pred ---CCChHHHHHHHHHHHhcCC
Q 045468 199 ---HGELLFLKEHELLGRSTGI 217 (221)
Q Consensus 199 ---Hge~~~~~~~~~~~~~~g~ 217 (221)
-|....+.+.++++++.|.
T Consensus 156 ~~~~G~~~~l~~i~~la~~~~~ 177 (370)
T TIGR02539 156 DGEYGNLPDAGKVAKVCREKGV 177 (370)
T ss_pred CCCCccccCHHHHHHHHHHcCC
Confidence 3566677888888888774
No 288
>PRK09389 (R)-citramalate synthase; Provisional
Probab=27.50 E-value=3.5e+02 Score=24.84 Aligned_cols=82 Identities=13% Similarity=0.084 Sum_probs=58.0
Q ss_pred CCEEEEEecCCCCcHH-HHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCC--CEEEEcC--CChHHHHH
Q 045468 133 EDVILYSAKVIPGNES-RVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKP--QHFLPIH--GELLFLKE 207 (221)
Q Consensus 133 ~~~vI~s~~~~pg~e~-~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~P--k~iiPVH--ge~~~~~~ 207 (221)
+..+.++.-...-.+. ...++...+.+.|++.+. ...+.|.+.|+++.++++.++- ...|=+| =+.-...+
T Consensus 127 g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~----l~DTvG~~~P~~~~~lv~~l~~~~~v~l~~H~HND~GlAvA 202 (488)
T PRK09389 127 GLIVELSGEDASRADLDFLKELYKAGIEAGADRIC----FCDTVGILTPEKTYELFKRLSELVKGPVSIHCHNDFGLAVA 202 (488)
T ss_pred CCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEE----EecCCCCcCHHHHHHHHHHHHhhcCCeEEEEecCCccHHHH
Confidence 4456666643333343 344677778888987762 6779999999999999999843 3344554 46668888
Q ss_pred HHHHHHhcCCC
Q 045468 208 HELLGRSTGIR 218 (221)
Q Consensus 208 ~~~~~~~~g~~ 218 (221)
++-.|.+.|..
T Consensus 203 NalaAv~aGa~ 213 (488)
T PRK09389 203 NTLAALAAGAD 213 (488)
T ss_pred HHHHHHHcCCC
Confidence 88888899964
No 289
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=27.40 E-value=63 Score=28.65 Aligned_cols=49 Identities=18% Similarity=0.221 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHHHHcCC-eEEEEccc
Q 045468 19 VVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGR-KLVFVGMS 67 (221)
Q Consensus 19 ~v~~~i~~~~~~~~g~viv~~~a~ni~Rl~~i~~~a~~~gR-~~vi~~~~ 67 (221)
+++-....++.+++|+++|..+.||++-+..++-.|.+.|- -+++.++.
T Consensus 76 ~IEgr~v~~~gD~~Gr~~Va~~pq~vdd~k~~~i~Aae~ga~a~~f~~~~ 125 (486)
T COG4882 76 DIEGRPVVLEGDAGGRVVVARAPQVVDDLKAAAILAAEAGAEALLFESRD 125 (486)
T ss_pred ccccceecccCCCCCeEEeeeccccHHHHHHHHHHHHHcCCeEEEEecCC
Confidence 45555556666889999999999999999888777777765 44455544
No 290
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=27.40 E-value=1.8e+02 Score=25.36 Aligned_cols=39 Identities=10% Similarity=0.179 Sum_probs=32.0
Q ss_pred HHHHHhcCCcEEEEeccccHHHHHHHHHHHHHcCCe-EEE
Q 045468 25 MRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRK-LVF 63 (221)
Q Consensus 25 ~~~~~~~~g~viv~~~a~ni~Rl~~i~~~a~~~gR~-~vi 63 (221)
.+.+.+.++.+++++-..+++-++..+.++++.|.+ +++
T Consensus 140 ik~iA~~~kPiIlSTGma~~~ei~~av~~~r~~g~~~i~L 179 (347)
T COG2089 140 IKYIAKKGKPIILSTGMATIEEIEEAVAILRENGNPDIAL 179 (347)
T ss_pred HHHHHhcCCCEEEEcccccHHHHHHHHHHHHhcCCCCeEE
Confidence 344555677999999999999999999999999997 554
No 291
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=27.23 E-value=3.2e+02 Score=23.72 Aligned_cols=43 Identities=19% Similarity=0.129 Sum_probs=26.1
Q ss_pred HHHHHHHHHHcCCeEEecC--------CceeeeecCCCHHHHHHHHHHcCC
Q 045468 150 VMKMLNRISEIGSTIVMGR--------NEGLHTSGHGYRGELEEVLKLVKP 192 (221)
Q Consensus 150 ~~~~~~~l~~~g~~v~~~~--------~~~~h~SGHA~~~dL~~~i~~i~P 192 (221)
...+...|.+.|++++... .....++.+.+.++++.+...+++
T Consensus 26 ~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~ 76 (333)
T TIGR03217 26 VRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKR 76 (333)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCC
Confidence 4566777778887776221 111135667777777777777654
No 292
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=27.10 E-value=2.7e+02 Score=22.71 Aligned_cols=49 Identities=16% Similarity=0.164 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEE-ecc-ccHHHHHHHHHHHHHcCCeEEEE
Q 045468 15 TSESVVKDALMRHVSAAKGRVITT-QFA-SNIHRLGSVKAAADLTGRKLVFV 64 (221)
Q Consensus 15 ~sE~~v~~~i~~~~~~~~g~viv~-~~a-~ni~Rl~~i~~~a~~~gR~~vi~ 64 (221)
.+-....+...+.++ ++.-|++- ..+ .+.+..+.+.++|++.|+++++-
T Consensus 45 tp~~~H~e~a~~aL~-aGkhVl~~s~gAlad~e~~~~l~~aA~~~g~~l~i~ 95 (229)
T TIGR03855 45 ASQEAVKEYAEKILK-NGKDLLIMSVGALADRELRERLREVARSSGRKVYIP 95 (229)
T ss_pred CChHHHHHHHHHHHH-CCCCEEEECCcccCCHHHHHHHHHHHHhcCCEEEEC
Confidence 344555666667664 45555552 121 27888999999999999988774
No 293
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=27.10 E-value=2.6e+02 Score=24.50 Aligned_cols=66 Identities=20% Similarity=0.223 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcC---C--CEEEEcCCChHHHHHHHHHHHhcCCC
Q 045468 149 RVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVK---P--QHFLPIHGELLFLKEHELLGRSTGIR 218 (221)
Q Consensus 149 ~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~---P--k~iiPVHge~~~~~~~~~~~~~~g~~ 218 (221)
....+...+.+.|++.+. ...+.|.+.|.++.++++.++ | ..-+=.|-..-...+++-.|.+.|+.
T Consensus 198 ~l~~~~~~~~~~Gad~I~----l~DT~G~a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~lAA~~aGa~ 268 (347)
T PLN02746 198 KVAYVAKELYDMGCYEIS----LGDTIGVGTPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQALANILVSLQMGIS 268 (347)
T ss_pred HHHHHHHHHHHcCCCEEE----ecCCcCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCChHHHHHHHHHHhCCC
Confidence 456677888889997762 577999999999999999994 3 23333455666777777788899974
No 294
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=26.89 E-value=2.1e+02 Score=20.53 Aligned_cols=44 Identities=5% Similarity=0.046 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEe-ccccHHHHHHHHHHHHHcCC
Q 045468 14 TTSESVVKDALMRHVSAAKGRVITTQ-FASNIHRLGSVKAAADLTGR 59 (221)
Q Consensus 14 ~~sE~~v~~~i~~~~~~~~g~viv~~-~a~ni~Rl~~i~~~a~~~gR 59 (221)
..+..++...+.+. ..+..|++-+ -....+++..+++.|++.|-
T Consensus 68 ~v~~~~L~~~l~~~--~~~~~v~i~aD~~~~~~~vv~v~d~~~~~G~ 112 (121)
T TIGR02804 68 PISLEELEAEIAQL--NKDQKVTLKSDKEAKFQDFVTITDMLKAKEH 112 (121)
T ss_pred ccCHHHHHHHHHhh--CCCCeEEEEeCCCCCHhHHHHHHHHHHHcCC
Confidence 44445555555543 2233444444 22456666666666666665
No 295
>PRK08636 aspartate aminotransferase; Provisional
Probab=26.88 E-value=2.9e+02 Score=24.15 Aligned_cols=53 Identities=11% Similarity=0.028 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHHh--cCCcEEEEeccc-------cHHHHHHHHHHHHHcCCeEEEEccc
Q 045468 15 TSESVVKDALMRHVSA--AKGRVITTQFAS-------NIHRLGSVKAAADLTGRKLVFVGMS 67 (221)
Q Consensus 15 ~sE~~v~~~i~~~~~~--~~g~viv~~~a~-------ni~Rl~~i~~~a~~~gR~~vi~~~~ 67 (221)
.+...+.+.+.+.+.. .+-+.++++++. ..+|++.|++.|++.+-.++.|..+
T Consensus 156 ~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y 217 (403)
T PRK08636 156 LDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAY 217 (403)
T ss_pred cChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccc
Confidence 4444555566666643 234666777644 3799999999999998877776544
No 296
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=26.61 E-value=4.1e+02 Score=22.69 Aligned_cols=64 Identities=9% Similarity=-0.012 Sum_probs=41.9
Q ss_pred HHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHhcCCCC
Q 045468 152 KMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGIRH 219 (221)
Q Consensus 152 ~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~~~~~~~~~~~~~~g~~~ 219 (221)
.+...+.+.|++++. ...+..|-.+...+..=++.-+|+.|+ +.+..++...+.+-+++.|++.
T Consensus 167 ~~~~~~~~~G~~vv~---~~~~~~~~~D~~~~v~~ik~a~pD~v~-~~~~~~~~~~~~~~~~~~G~~~ 230 (357)
T cd06337 167 GLPAALADAGYKLVD---PGRFEPGTDDFSSQINAFKREGVDIVT-GFAIPPDFATFWRQAAQAGFKP 230 (357)
T ss_pred cccHHHHhCCcEEec---ccccCCCCCcHHHHHHHHHhcCCCEEE-eCCCccHHHHHHHHHHHCCCCC
Confidence 455677788998872 123344555544444445566898876 4466667888888888888853
No 297
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=26.52 E-value=91 Score=26.46 Aligned_cols=57 Identities=16% Similarity=0.164 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHHH--hcCCcEEEEecccc--------HHHHHHHHHHHHHcCCeEEEEcccHHHH
Q 045468 14 TTSESVVKDALMRHVS--AAKGRVITTQFASN--------IHRLGSVKAAADLTGRKLVFVGMSLRTY 71 (221)
Q Consensus 14 ~~sE~~v~~~i~~~~~--~~~g~viv~~~a~n--------i~Rl~~i~~~a~~~gR~~vi~~~~~~~~ 71 (221)
..+-++|++.+.+.=. ...+.|.+ ..++| ++.|..|.++|++.|-++++||..+..-
T Consensus 105 ~l~~~~l~~~~~~~~~h~~~~~~v~l-e~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a 171 (290)
T PF01212_consen 105 KLTPEDLEAAIEEHGAHHPQPAVVSL-ENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANA 171 (290)
T ss_dssp BB-HHHHHHHHHHHTGTSGGEEEEEE-ESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHH
T ss_pred CCCHHHHHHHhhhccccCCCccEEEE-EecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHh
Confidence 3566677776665311 11223333 33333 6799999999999999999999876443
No 298
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=26.41 E-value=3.9e+02 Score=22.37 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=27.1
Q ss_pred cCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEE
Q 045468 130 LTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIV 165 (221)
Q Consensus 130 ~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~ 165 (221)
+.++|++|.-+. .|+-.+.....+...+.|++++
T Consensus 175 ~~~~Dv~i~iS~--sG~t~e~i~~a~~ak~~ga~vI 208 (281)
T COG1737 175 LTPGDVVIAISF--SGYTREIVEAAELAKERGAKVI 208 (281)
T ss_pred CCCCCEEEEEeC--CCCcHHHHHHHHHHHHCCCcEE
Confidence 458888877774 4877777788888999999988
No 299
>PRK06855 aminotransferase; Validated
Probab=26.39 E-value=4.6e+02 Score=23.28 Aligned_cols=94 Identities=15% Similarity=0.088 Sum_probs=0.0
Q ss_pred EEEecCCCccHHHHHHHHhcCCCCCcccCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeec----CC
Q 045468 103 LIVTTGSQAEPRAALNLASYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSG----HG 178 (221)
Q Consensus 103 vi~~~g~~~e~~~~l~~~~~~~~~~~~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SG----HA 178 (221)
+++++|.+.-+...+. +.. +||.|++-.+..|++.. ......|+.++ .+.... ..
T Consensus 99 I~it~G~~~al~~~~~-l~~---------~Gd~Vlv~~P~Y~~~~~------~~~~~~g~~~v-----~v~~~~~~~~~~ 157 (433)
T PRK06855 99 IIFFNGLGDAIAKIYG-LLR---------REARVIGPSPAYSTHSS------AEAAHAGYPPV-----TYRLDPENNWYP 157 (433)
T ss_pred EEEcCcHHHHHHHHHH-hcC---------CCCeEEEeCCCCchHHH------HHHHhcCCeEE-----EEecccccCCCC
Q ss_pred CHHHHHHHHHHc-CCCEEEEcCCChH--------HHHHHHHHHHhcCC
Q 045468 179 YRGELEEVLKLV-KPQHFLPIHGELL--------FLKEHELLGRSTGI 217 (221)
Q Consensus 179 ~~~dL~~~i~~i-~Pk~iiPVHge~~--------~~~~~~~~~~~~g~ 217 (221)
+.++|.+.+..- +++.++-.+=-+| ++.+.+++|++.|+
T Consensus 158 d~~~l~~~~~~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~ 205 (433)
T PRK06855 158 DLDDLENKVKYNPSIAGILLINPDNPTGAVYPKEILREIVDIAREYDL 205 (433)
T ss_pred CHHHHHHHHhcCCCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCC
No 300
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=26.28 E-value=4e+02 Score=22.50 Aligned_cols=150 Identities=12% Similarity=0.088 Sum_probs=75.4
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHHcCCeEEEEccc-HHHHHHHHHHCCCCCCCCCCccC-hhhh-hhcCCCCEEEEecC
Q 045468 32 KGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMS-LRTYLDAAWKDGKAPIDPSTLVK-VEDI-DAYAPKDLLIVTTG 108 (221)
Q Consensus 32 ~g~viv~~~a~ni~Rl~~i~~~a~~~gR~~vi~~~~-~~~~~~~~~~~g~~~~~~~~~v~-~~~~-~~~~~~~~vi~~~g 108 (221)
++..+-.+-..|++-+..++++|.+.+.++++.-.. ...+.. |+. .+.. ...+ +.. ..+-+....
T Consensus 14 ~~yav~Afn~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~-----~~~-----~~~~~~~~~a~~~--~~vpv~lhl 81 (282)
T TIGR01859 14 EGYAVGAFNFNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMG-----GYK-----MAVAMVKTLIERM--SIVPVALHL 81 (282)
T ss_pred CCceEEEEEECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccC-----cHH-----HHHHHHHHHHHHC--CCCeEEEEC
Confidence 455555555578999999999999999988885221 001100 000 0000 0000 111 002233333
Q ss_pred CCccHHHHHHHHhcCCCCCcccCCCCEEEEEecCCCC--cHHHHHHHHHHHHHcCCeEEec--C-----Cceee--eecC
Q 045468 109 SQAEPRAALNLASYGGSHSLKLTNEDVILYSAKVIPG--NESRVMKMLNRISEIGSTIVMG--R-----NEGLH--TSGH 177 (221)
Q Consensus 109 ~~~e~~~~l~~~~~~~~~~~~~~~~~~vI~s~~~~pg--~e~~~~~~~~~l~~~g~~v~~~--~-----~~~~h--~SGH 177 (221)
.++.....+.+.... .=+.+.+=.+..|- +.....++.......|+.+-.+ . +..+. .|.|
T Consensus 82 DH~~~~e~i~~ai~~--------Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t 153 (282)
T TIGR01859 82 DHGSSYESCIKAIKA--------GFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELA 153 (282)
T ss_pred CCCCCHHHHHHHHHc--------CCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccC
Confidence 555544444333221 11234444443332 2234556666667777765421 0 10111 2332
Q ss_pred CCHHHHHHHHHHcCCCEEEE----cCCCh
Q 045468 178 GYRGELEEVLKLVKPQHFLP----IHGEL 202 (221)
Q Consensus 178 A~~~dL~~~i~~i~Pk~iiP----VHge~ 202 (221)
+++|.+++++...+.++.+ +||.+
T Consensus 154 -~~eea~~f~~~tgvD~Lavs~Gt~hg~~ 181 (282)
T TIGR01859 154 -DPDEAEQFVKETGVDYLAAAIGTSHGKY 181 (282)
T ss_pred -CHHHHHHHHHHHCcCEEeeccCcccccc
Confidence 7888888888888888874 58765
No 301
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=26.25 E-value=1.3e+02 Score=25.66 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=25.0
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHHcCCeEEEE
Q 045468 32 KGRVITTQFASNIHRLGSVKAAADLTGRKLVFV 64 (221)
Q Consensus 32 ~g~viv~~~a~ni~Rl~~i~~~a~~~gR~~vi~ 64 (221)
++..+-.+-..|++-+..++++|.+.+.++++-
T Consensus 15 ~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIlq 47 (287)
T PF01116_consen 15 GGYAVPAFNVYNLETARAVIEAAEELNSPVILQ 47 (287)
T ss_dssp HT-BEEEEE-SSHHHHHHHHHHHHHTTS-EEEE
T ss_pred CCCeEEEEeeCCHHHHHHHHHHHHHhCCCEEEE
Confidence 456666666678999999999999999988875
No 302
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=26.23 E-value=1.9e+02 Score=22.53 Aligned_cols=55 Identities=20% Similarity=0.371 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHHHHcCCeEEEEcccHHHHHHHHH
Q 045468 16 SESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAW 76 (221)
Q Consensus 16 sE~~v~~~i~~~~~~~~g~viv~~~a~ni~Rl~~i~~~a~~~gR~~vi~~~~~~~~~~~~~ 76 (221)
--.++.+.+.+...+ +|-+++..|+- .-+-+.||.++||..+-.... ..+.+.+.
T Consensus 176 kP~~l~~~lI~~~t~-~gdiVlDpF~G----SGTT~~aa~~l~R~~ig~E~~-~~y~~~a~ 230 (231)
T PF01555_consen 176 KPVELIERLIKASTN-PGDIVLDPFAG----SGTTAVAAEELGRRYIGIEID-EEYCEIAK 230 (231)
T ss_dssp S-HHHHHHHHHHHS--TT-EEEETT-T----TTHHHHHHHHTT-EEEEEESS-HHHHHHHH
T ss_pred CCHHHHHHHHHhhhc-cceeeehhhhc----cChHHHHHHHcCCeEEEEeCC-HHHHHHhc
Confidence 335666666666544 56666776662 256788999999987766544 25555554
No 303
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=26.17 E-value=4.4e+02 Score=22.99 Aligned_cols=78 Identities=10% Similarity=-0.002 Sum_probs=45.3
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCC-----ChHHHH
Q 045468 132 NEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHG-----ELLFLK 206 (221)
Q Consensus 132 ~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHg-----e~~~~~ 206 (221)
+++.++.+....+.+... ...+...|+++...+ ..-.|.-+.++|++.++. +++.++..|. -...+.
T Consensus 91 ~g~~Vi~~~~~h~s~~~~----~~~~~~~g~~v~~v~---~~~~~~~d~~~l~~~l~~-~~~lv~v~~~~n~tG~~~~~~ 162 (402)
T TIGR02006 91 KGNHIITSKTEHKAVLDT----CRYLEREGFEVTYLP---PKSNGLIDLEELKAAIRD-DTILVSIMHVNNEIGVIQDIA 162 (402)
T ss_pred CCCEEEECCCccHHHHHH----HHHHHhcCCEEEEEc---cCCCCcCCHHHHHHhcCC-CCEEEEEECCCcCceecccHH
Confidence 678888776533322221 233456788776321 122455677777766532 4566665555 334677
Q ss_pred HHHHHHHhcCC
Q 045468 207 EHELLGRSTGI 217 (221)
Q Consensus 207 ~~~~~~~~~g~ 217 (221)
+.++++++.|+
T Consensus 163 ~I~~l~~~~g~ 173 (402)
T TIGR02006 163 AIGEICRERKV 173 (402)
T ss_pred HHHHHHHHcCC
Confidence 88888888874
No 304
>PF01520 Amidase_3: N-acetylmuramoyl-L-alanine amidase; InterPro: IPR002508 The cell wall envelope of Gram-positive bacteria is a macromolecular, exoskeletal organelle that is assembled and turned over at designated sites. The cell wall also functions as a surface organelle that allows Gram-positive pathogens to interact with their environment, in particular the tissues of the infected host. All of these functions require that surface proteins and enzymes be properly targeted to the cell wall envelope. Two basic mechanisms, cell wall sorting and targeting, have been identified. Cell well sorting is the covalent attachment of surface proteins to the peptidoglycan via a C-terminal sorting signal that contains a consensus LPXTG sequence. More than 100 proteins that possess cell wall-sorting signals, including the M proteins of Streptococcus pyogenes, protein A of Staphylococcus aureus, and several internalins of Listeria monocytogenes, have been identified. Cell wall targeting involves the noncovalent attachment of proteins to the cell surface via specialised binding domains. Several of these wall-binding domains appear to interact with secondary wall polymers that are associated with the peptidoglycan, for example teichoic acids and polysaccharides. Proteins that are targeted to the cell surface include muralytic enzymes such as autolysins, lysostaphin, and phage lytic enzymes. Other examples for targeted proteins are the surface S-layer proteins of bacilli and clostridia, as well as virulence factors required for the pathogenesis of L. monocytogenes (internalin B) and Streptococcus pneumoniae (PspA) infections []. Autolysin 3.5.1.28 from EC hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell wall glycopeptides.; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3QAY_A 3CZX_A 1JWQ_A 1XOV_A 3NE8_A.
Probab=26.15 E-value=1.8e+02 Score=22.04 Aligned_cols=48 Identities=13% Similarity=0.214 Sum_probs=36.3
Q ss_pred HHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCC
Q 045468 150 VMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGE 201 (221)
Q Consensus 150 ~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge 201 (221)
...+..+|.+.|++|+..++.. --.+.++-..+++..+|..+|-+|..
T Consensus 30 a~~l~~~L~~~g~~V~~tr~~d----~~~~l~~R~~~an~~~ad~~isiH~n 77 (175)
T PF01520_consen 30 ALRLKKELEKHGIKVYLTRDND----SDVSLQERAALANSWGADLFISIHFN 77 (175)
T ss_dssp HHHHHHHHHHTTEEEEESSSSS----HCCCHHHHHHHHHHTTSSEEEEEEEE
T ss_pred HHHHHHHHhcCCcEEEEeCCCC----CCCCHHHHHHHHHhcccCEEEEEeec
Confidence 4457788999999988543321 23478888888888999999999975
No 305
>PRK07568 aspartate aminotransferase; Provisional
Probab=26.14 E-value=4.3e+02 Score=22.83 Aligned_cols=77 Identities=17% Similarity=0.184 Sum_probs=40.0
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeec-C-CCHHHHHHHHHHcCCCEEEEcCCCh------
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSG-H-GYRGELEEVLKLVKPQHFLPIHGEL------ 202 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SG-H-A~~~dL~~~i~~i~Pk~iiPVHge~------ 202 (221)
++||.|+...+..+++. .+....|++++....+ . ..| - .+.++|...++. +++.++-.|-.+
T Consensus 110 ~~gd~Vl~~~p~y~~~~-------~~~~~~g~~~~~v~~~-~-~~g~~~~~~~~l~~~~~~-~~~~v~i~~p~NPtG~~~ 179 (397)
T PRK07568 110 DPGDEILVPEPFYANYN-------GFATSAGVKIVPVTTK-I-EEGFHLPSKEEIEKLITP-KTKAILISNPGNPTGVVY 179 (397)
T ss_pred CCCCEEEEecCCCccHH-------HHHHHcCCEEEEeecC-c-ccCCCCCCHHHHHHhcCc-cceEEEEECCCCCCCccC
Confidence 47888888775333322 3345678877621110 0 012 1 123555554432 456665545322
Q ss_pred --HHHHHHHHHHHhcCC
Q 045468 203 --LFLKEHELLGRSTGI 217 (221)
Q Consensus 203 --~~~~~~~~~~~~~g~ 217 (221)
.++.+.++++++.|+
T Consensus 180 ~~~~~~~i~~~~~~~~~ 196 (397)
T PRK07568 180 TKEELEMLAEIAKKHDL 196 (397)
T ss_pred CHHHHHHHHHHHHHCCc
Confidence 257778888887764
No 306
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=26.09 E-value=2.4e+02 Score=22.41 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=21.4
Q ss_pred HHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCC
Q 045468 151 MKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGE 201 (221)
Q Consensus 151 ~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge 201 (221)
..++..-.+.|..+. +|+. .+ .+++.++++...|...+-+|+.
T Consensus 111 ~~~~~~a~e~~~pv~------iH~~-~~-~~~~~~l~~~~~~~~~~i~H~~ 153 (251)
T cd01310 111 RAQLELAKELNLPVV------IHSR-DA-HEDVLEILKEYGPPKRGVFHCF 153 (251)
T ss_pred HHHHHHHHHhCCCeE------EEee-Cc-hHHHHHHHHhcCCCCCEEEEcc
Confidence 334455555566553 6633 22 4556666666653333333554
No 307
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=26.01 E-value=2.3e+02 Score=20.99 Aligned_cols=43 Identities=19% Similarity=0.166 Sum_probs=32.3
Q ss_pred HHHHHHHHcC--CeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCC
Q 045468 152 KMLNRISEIG--STIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGE 201 (221)
Q Consensus 152 ~~~~~l~~~g--~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge 201 (221)
+.++-++++. +++ .-.|+|-..+.|.+.+...+|++++-...+
T Consensus 13 qtLdVi~~~~d~f~v-------~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~ 57 (129)
T PF02670_consen 13 QTLDVIRKHPDKFEV-------VALSAGSNIEKLAEQAREFKPKYVVIADEE 57 (129)
T ss_dssp HHHHHHHHCTTTEEE-------EEEEESSTHHHHHHHHHHHT-SEEEESSHH
T ss_pred HHHHHHHhCCCceEE-------EEEEcCCCHHHHHHHHHHhCCCEEEEcCHH
Confidence 4556666655 444 456899999999999999999998876654
No 308
>PRK07049 methionine gamma-lyase; Validated
Probab=25.94 E-value=4.8e+02 Score=23.32 Aligned_cols=74 Identities=16% Similarity=0.165 Sum_probs=40.9
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHc----CCCEEEEcCC-----C
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLV----KPQHFLPIHG-----E 201 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i----~Pk~iiPVHg-----e 201 (221)
++||.++...+..+++... +...+...|++++ .+. -+.+.+++...+... +++.++--.= .
T Consensus 120 ~~Gd~Vv~~~p~Y~~~~~~---~~~~l~~~Gi~~v-----~~~--~~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~ 189 (427)
T PRK07049 120 RPGDVILHSQPLYGGTETL---LAKTFRNFGVGAV-----GFA--DGLSEAAIGAAAEAAAAKGRVSLILIETPANPTNS 189 (427)
T ss_pred CCCCEEEEcCCCcccHHHH---HHHHHHhcCcEEE-----EEe--CCCCHHHHHHHHHhhccCCCceEEEEECCCCCCCc
Confidence 4889988877655555432 3345677899765 232 235667777666432 4555543322 2
Q ss_pred hHHHHHHHHHHHh
Q 045468 202 LLFLKEHELLGRS 214 (221)
Q Consensus 202 ~~~~~~~~~~~~~ 214 (221)
-....+.+++++.
T Consensus 190 v~d~~~l~~la~~ 202 (427)
T PRK07049 190 LVDVAAVRRVADA 202 (427)
T ss_pred ccCHHHHHHHHHH
Confidence 2344455555554
No 309
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=25.80 E-value=3.3e+02 Score=22.78 Aligned_cols=31 Identities=10% Similarity=0.035 Sum_probs=24.6
Q ss_pred CcEEEEeccccHHHHHHHHHHHHHcCCeEEE
Q 045468 33 GRVITTQFASNIHRLGSVKAAADLTGRKLVF 63 (221)
Q Consensus 33 g~viv~~~a~ni~Rl~~i~~~a~~~gR~~vi 63 (221)
..|-+.+..+|++++...++.|++.|..+.+
T Consensus 106 ~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 106 DIFRIFDALNDVRNLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred CEEEEeecCChHHHHHHHHHHHHHCCCeEEE
Confidence 4566666777899999999999999986654
No 310
>PRK08462 biotin carboxylase; Validated
Probab=25.78 E-value=2.3e+02 Score=25.38 Aligned_cols=38 Identities=11% Similarity=0.043 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHhcCC
Q 045468 180 RGELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGI 217 (221)
Q Consensus 180 ~~dL~~~i~~i~Pk~iiPVHge~~~~~~~~~~~~~~g~ 217 (221)
.+.|.++++..++..++|-.|...+-..+++.+++.|+
T Consensus 65 ~~~l~~~~~~~~~D~i~pg~g~lse~~~~a~~~e~~Gi 102 (445)
T PRK08462 65 IPAIISAAEIFEADAIFPGYGFLSENQNFVEICSHHNI 102 (445)
T ss_pred HHHHHHHHHHcCCCEEEECCCccccCHHHHHHHHHCCC
Confidence 56788888888888888888754434455566666675
No 311
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=25.64 E-value=3.7e+02 Score=21.95 Aligned_cols=14 Identities=14% Similarity=0.368 Sum_probs=7.6
Q ss_pred HHHHHHHHcCCeEE
Q 045468 152 KMLNRISEIGSTIV 165 (221)
Q Consensus 152 ~~~~~l~~~g~~v~ 165 (221)
+....-..+|++.+
T Consensus 98 ~~i~~a~~lG~~~v 111 (284)
T PRK13210 98 KAIRLAQDLGIRTI 111 (284)
T ss_pred HHHHHHHHhCCCEE
Confidence 34444555666665
No 312
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=25.59 E-value=2.6e+02 Score=20.17 Aligned_cols=43 Identities=12% Similarity=0.036 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhcCC-cEEEEe-ccccHHHHHHHHHHHHHcCC
Q 045468 17 ESVVKDALMRHVSAAKG-RVITTQ-FASNIHRLGSVKAAADLTGR 59 (221)
Q Consensus 17 E~~v~~~i~~~~~~~~g-~viv~~-~a~ni~Rl~~i~~~a~~~gR 59 (221)
..++.+.+.+...+.++ .|++.+ -....+++..++++|++.|-
T Consensus 77 ~~~L~~~L~~~~~~~~~~~v~i~aD~~~~~~~vv~vmd~~~~~G~ 121 (129)
T TIGR02801 77 ADELLAEIAAALAANPDTPVLIRADKTVPYGEVIKVMALLKQAGI 121 (129)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEcCCCCCHHHHHHHHHHHHHcCC
Confidence 34455666665543332 455555 34567788888888887775
No 313
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.56 E-value=3.6e+02 Score=23.02 Aligned_cols=40 Identities=13% Similarity=0.058 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcC
Q 045468 147 ESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVK 191 (221)
Q Consensus 147 e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~ 191 (221)
......-.....+.|+.+. .++++..++.+||.+.|+.+|
T Consensus 47 ~~Yv~~k~k~a~~~Gi~~~-----~~~l~~~~~~~~l~~~I~~LN 86 (288)
T PRK14171 47 IIYVKNKIKNAHKIGIDTL-----LVNLSTTIHTNDLISKINELN 86 (288)
T ss_pred HHHHHHHHHHHHHcCCEEE-----EEECCCCCCHHHHHHHHHHHc
Confidence 3333445567777788775 677888888888888888884
No 314
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=25.54 E-value=1.8e+02 Score=20.04 Aligned_cols=65 Identities=15% Similarity=0.104 Sum_probs=40.1
Q ss_pred EEEEecCCCCc---HHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcC---CCEEEE------cC-CCh
Q 045468 136 ILYSAKVIPGN---ESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVK---PQHFLP------IH-GEL 202 (221)
Q Consensus 136 vI~s~~~~pg~---e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~---Pk~iiP------VH-ge~ 202 (221)
.+|.++ .-|. -.....+...|...++++- .+..|. +++...+|.+... ++..+| .| |.+
T Consensus 3 ~vY~ts-~~g~~~~k~~~~~v~~lL~~k~I~f~-----eiDI~~--d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ 74 (92)
T cd03030 3 KVYIAS-SSGSTEIKKRQQEVLGFLEAKKIEFE-----EVDISM--NEENRQWMRENVPNENGKPLPPQIFNGDEYCGDY 74 (92)
T ss_pred EEEEec-ccccHHHHHHHHHHHHHHHHCCCceE-----EEecCC--CHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCH
Confidence 355554 3453 2456778899999999875 677776 4666667776653 234444 23 666
Q ss_pred HHHHHH
Q 045468 203 LFLKEH 208 (221)
Q Consensus 203 ~~~~~~ 208 (221)
.++.+.
T Consensus 75 ddl~~l 80 (92)
T cd03030 75 EAFFEA 80 (92)
T ss_pred HHHHHH
Confidence 666553
No 315
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=25.53 E-value=4.9e+02 Score=23.63 Aligned_cols=72 Identities=14% Similarity=0.099 Sum_probs=46.1
Q ss_pred CCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHH
Q 045468 133 EDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGELLFLKEHELLG 212 (221)
Q Consensus 133 ~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~~~~~~~~~~~ 212 (221)
++.-|+..+.++|. ...+...|+++|+++. .+++|-++.+||+.+ -+.+.-|.+.+.... ..++.+
T Consensus 202 ~~VNiiG~~~~~gd---~~el~~lL~~~Gi~v~------~~~~g~~t~~ei~~~---~~A~lnlv~~~~~~~--~~A~~L 267 (461)
T TIGR01860 202 YTINVIGDYNIQGD---TQVLQKYWDKMGIQVI------AHFTGNGTYDDLRCM---HRAQLNVVNCARSAG--YIANEL 267 (461)
T ss_pred CcEEEECCCCCccc---HHHHHHHHHHcCCcEE------EEeCCCCCHHHHHhc---ccCcEEEEECchHHH--HHHHHH
Confidence 34446655555553 3457788889999885 678898999988876 345555555444322 246666
Q ss_pred H-hcCCC
Q 045468 213 R-STGIR 218 (221)
Q Consensus 213 ~-~~g~~ 218 (221)
+ ..|++
T Consensus 268 eer~GiP 274 (461)
T TIGR01860 268 KKRYGIP 274 (461)
T ss_pred HHHhCCC
Confidence 5 45875
No 316
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=25.45 E-value=4e+02 Score=22.19 Aligned_cols=82 Identities=11% Similarity=0.134 Sum_probs=55.7
Q ss_pred CCEEEEEecCCCCcH-HHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCC--EEEEcCC--ChHHHHH
Q 045468 133 EDVILYSAKVIPGNE-SRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQ--HFLPIHG--ELLFLKE 207 (221)
Q Consensus 133 ~~~vI~s~~~~pg~e-~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk--~iiPVHg--e~~~~~~ 207 (221)
|-.+-++...+.+.+ .....+...+...|++.+. ...+.|.+.|+++..+++.++-. .-|=+|+ ..-...+
T Consensus 125 G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~----l~Dt~G~~~P~~v~~~~~~~~~~~~~~i~~H~Hn~~Gla~a 200 (262)
T cd07948 125 GIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVG----IADTVGIATPRQVYELVRTLRGVVSCDIEFHGHNDTGCAIA 200 (262)
T ss_pred CCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEE----ECCcCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCChHHH
Confidence 344555554455543 3455677777888887662 57799999999999999998533 2233444 5556777
Q ss_pred HHHHHHhcCCC
Q 045468 208 HELLGRSTGIR 218 (221)
Q Consensus 208 ~~~~~~~~g~~ 218 (221)
++-.|.+.|++
T Consensus 201 n~~~a~~aG~~ 211 (262)
T cd07948 201 NAYAALEAGAT 211 (262)
T ss_pred HHHHHHHhCCC
Confidence 77778888864
No 317
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=25.43 E-value=4.4e+02 Score=24.13 Aligned_cols=65 Identities=12% Similarity=0.022 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHc---CCCEEEEcCCChHHHHHHHHHHHhcCCC
Q 045468 149 RVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLV---KPQHFLPIHGELLFLKEHELLGRSTGIR 218 (221)
Q Consensus 149 ~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i---~Pk~iiPVHge~~~~~~~~~~~~~~g~~ 218 (221)
....+...+.+.|+.+.. ..-.....+..|+..++..+ +|+.|| +.+..++.....+.|++.|+.
T Consensus 203 ~~~~~~~~~~~~Gi~I~~----~~~i~~~~~~~d~~~~l~klk~~~a~vVv-l~~~~~~~~~ll~qa~~~g~~ 270 (510)
T cd06364 203 GIEKFREEAEERDICIDF----SELISQYSDEEEIQRVVEVIQNSTAKVIV-VFSSGPDLEPLIKEIVRRNIT 270 (510)
T ss_pred HHHHHHHHHHHCCcEEEE----EEEeCCCCCHHHHHHHHHHHHhcCCeEEE-EEeCcHHHHHHHHHHHHhCCC
Confidence 345677888889988752 11112223566777776555 566555 666667888888888888874
No 318
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=25.32 E-value=2.9e+02 Score=22.45 Aligned_cols=52 Identities=13% Similarity=-0.019 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHHHHcCC-eEEEEc
Q 045468 14 TTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGR-KLVFVG 65 (221)
Q Consensus 14 ~~sE~~v~~~i~~~~~~~~g~viv~~~a~ni~Rl~~i~~~a~~~gR-~~vi~~ 65 (221)
+.+.+-+.+++..++++-+=.++=.-+-.+.+-+..+.+.+++.+. ++|++.
T Consensus 49 ~~~~~~~~~q~~~~~~d~~~~aikiG~l~~~~~~~~i~~~~~~~~~~~vVlDP 101 (254)
T TIGR00097 49 PIPPDFVEAQLDAVFSDIPVDAAKTGMLASAEIVEAVARKLREYPVRPLVVDP 101 (254)
T ss_pred ECCHHHHHHHHHHHHhCCCCCEEEECCcCCHHHHHHHHHHHHhcCCCcEEECC
Confidence 4677889999999987654344444454567778888888888888 588873
No 319
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=25.28 E-value=1.9e+02 Score=25.40 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=27.9
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHHcCCeEEEE
Q 045468 32 KGRVITTQFASNIHRLGSVKAAADLTGRKLVFV 64 (221)
Q Consensus 32 ~g~viv~~~a~ni~Rl~~i~~~a~~~gR~~vi~ 64 (221)
++..+-.+-..|++-+..++++|.+.+.++++-
T Consensus 14 ~~yAV~AfN~~n~e~~~avi~AAee~~sPvIiq 46 (345)
T cd00946 14 NGFAIPAVNCTSSSTINAVLEAARDAKSPIIIQ 46 (345)
T ss_pred CCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEE
Confidence 456666666678999999999999999988885
No 320
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=25.20 E-value=3.2e+02 Score=22.07 Aligned_cols=56 Identities=14% Similarity=0.051 Sum_probs=34.0
Q ss_pred CCCCCCCHHHHHHHHHHHHH----hcCCcEEEEec--cccHHHHHHHHHHHHHc--CCeEEEEc
Q 045468 10 SPGRTTSESVVKDALMRHVS----AAKGRVITTQF--ASNIHRLGSVKAAADLT--GRKLVFVG 65 (221)
Q Consensus 10 ~~~~~~sE~~v~~~i~~~~~----~~~g~viv~~~--a~ni~Rl~~i~~~a~~~--gR~~vi~~ 65 (221)
..+...++..+.+.+..+.. .....|++... ...++.+..+++.+++. |.+++++.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dp 110 (254)
T cd01173 47 WTGFVLSAEELEDLLEGLEALGLLLEYDAVLTGYLGSAEQVEAVAEIVKRLKEKNPNLLYVCDP 110 (254)
T ss_pred CCCeecCHHHHHHHHHHHHHcCCcccCCEEEEecCCCHHHHHHHHHHHHHHHHhCCCceEEECC
Confidence 44556777777766666543 12234444432 34466777788878776 66777764
No 321
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.14 E-value=3.6e+02 Score=21.60 Aligned_cols=17 Identities=0% Similarity=0.075 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHcCCeEE
Q 045468 149 RVMKMLNRISEIGSTIV 165 (221)
Q Consensus 149 ~~~~~~~~l~~~g~~v~ 165 (221)
......+++...+++.+
T Consensus 45 ~~~~~i~~l~~~~vdgi 61 (271)
T cd06312 45 DMARLIEAAIAAKPDGI 61 (271)
T ss_pred HHHHHHHHHHHhCCCEE
Confidence 34455566666666543
No 322
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=25.03 E-value=1.8e+02 Score=24.79 Aligned_cols=33 Identities=6% Similarity=0.131 Sum_probs=26.4
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHHcCCeEEEE
Q 045468 32 KGRVITTQFASNIHRLGSVKAAADLTGRKLVFV 64 (221)
Q Consensus 32 ~g~viv~~~a~ni~Rl~~i~~~a~~~gR~~vi~ 64 (221)
++..+..+-..|++-+..++++|.+.+.++++.
T Consensus 16 ~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq 48 (286)
T PRK12738 16 NGYAVPAFNIHNAETIQAILEVCSEMRSPVILA 48 (286)
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEE
Confidence 456665555577999999999999999988884
No 323
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=25.02 E-value=2.5e+02 Score=23.14 Aligned_cols=43 Identities=16% Similarity=0.137 Sum_probs=31.7
Q ss_pred cCCcEEEEeccccHHHHHHHHHHHHHcCCeEEEEcccHHHHHHHH
Q 045468 31 AKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAA 75 (221)
Q Consensus 31 ~~g~viv~~~a~ni~Rl~~i~~~a~~~gR~~vi~~~~~~~~~~~~ 75 (221)
+++.|+|+--++-|+| .+.+...++|-+++++||....+-++.
T Consensus 4 tgnTiLITGG~sGIGl--~lak~f~elgN~VIi~gR~e~~L~e~~ 46 (245)
T COG3967 4 TGNTILITGGASGIGL--ALAKRFLELGNTVIICGRNEERLAEAK 46 (245)
T ss_pred cCcEEEEeCCcchhhH--HHHHHHHHhCCEEEEecCcHHHHHHHH
Confidence 3567888888888887 566777778888999998876554443
No 324
>PRK09028 cystathionine beta-lyase; Provisional
Probab=24.77 E-value=5e+02 Score=23.07 Aligned_cols=75 Identities=9% Similarity=0.018 Sum_probs=43.6
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcC-----CChHHH
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIH-----GELLFL 205 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVH-----ge~~~~ 205 (221)
++||.+|.+... |-.-..-+.+.+.+.|+++. .+. ....+++...++. ++|.++--| |.-.++
T Consensus 98 ~~GD~Vvv~~~~---Y~~t~~l~~~~l~~~Gi~v~-----~v~---~~~~e~l~~~l~~-~TklV~lespsNPtg~v~dl 165 (394)
T PRK09028 98 KAGDHLLMVDSC---YEPTRDLCDKILKGFGIETT-----YYD---PMIGEGIRELIRP-NTKVLFLESPGSITMEVQDV 165 (394)
T ss_pred CCCCEEEEECCC---cHHHHHHHHHhhhhcceEEE-----EEC---CCCHHHHHHhcCc-CceEEEEECCCCCCCcHHHH
Confidence 489998887653 43333234456677888774 221 1133555554421 344444322 455678
Q ss_pred HHHHHHHHhcCC
Q 045468 206 KEHELLGRSTGI 217 (221)
Q Consensus 206 ~~~~~~~~~~g~ 217 (221)
.+.+++|++.|+
T Consensus 166 ~~I~~la~~~g~ 177 (394)
T PRK09028 166 PTLSRIAHEHDI 177 (394)
T ss_pred HHHHHHHHHcCC
Confidence 888999999885
No 325
>PRK00939 translation initiation factor Sui1; Reviewed
Probab=24.74 E-value=1e+02 Score=21.83 Aligned_cols=24 Identities=13% Similarity=0.052 Sum_probs=18.0
Q ss_pred EEEcCCChHHHHHHHHHHHhcCCCCC
Q 045468 195 FLPIHGELLFLKEHELLGRSTGIRHS 220 (221)
Q Consensus 195 iiPVHge~~~~~~~~~~~~~~g~~~~ 220 (221)
.|-+.|++++... +++.+.||+..
T Consensus 73 ~I~iQGD~r~~v~--~~L~~~G~~~~ 96 (99)
T PRK00939 73 RIELQGDHRERVK--ELLIKMGFSEE 96 (99)
T ss_pred EEEEeCcHHHHHH--HHHHHcCCChh
Confidence 4889999766554 77788898753
No 326
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=24.57 E-value=2.7e+02 Score=22.36 Aligned_cols=67 Identities=16% Similarity=0.192 Sum_probs=41.3
Q ss_pred HHHHHHHHcCCeEEe-cC--CceeeeecCCCHHHHHHHHHHcCCCEEEEcCCCh----HHHHHHHHHHHhcCCC
Q 045468 152 KMLNRISEIGSTIVM-GR--NEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGEL----LFLKEHELLGRSTGIR 218 (221)
Q Consensus 152 ~~~~~l~~~g~~v~~-~~--~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~----~~~~~~~~~~~~~g~~ 218 (221)
.+.+++.+.|..++. .. .+......-....-+..+++.++|..||..|... ..+-...+.+++.|+.
T Consensus 143 ~~~~~l~~~Gy~~v~w~v~~~Dw~~~~~~~~~~~~~~v~~~~~~g~IiLlHd~~~~t~~aL~~ii~~lk~~Gy~ 216 (224)
T TIGR02884 143 RTLAYTKELGYYTVFWSLAFKDWKVDEQPGWQYAYKQIMKKIHPGAILLLHAVSKDNAEALDKIIKDLKEQGYT 216 (224)
T ss_pred HHHHHHHHcCCcEEeccccCcccCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHHHHHHCCCE
Confidence 356888999987762 11 1111111122234566788889999999999643 2455556677788874
No 327
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=24.53 E-value=2.1e+02 Score=21.57 Aligned_cols=17 Identities=12% Similarity=0.257 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHcCCe
Q 045468 147 ESRVMKMLNRISEIGST 163 (221)
Q Consensus 147 e~~~~~~~~~l~~~g~~ 163 (221)
+..+.++...|..++-.
T Consensus 140 ~~~~~~~~~~l~~~~~~ 156 (163)
T PF03446_consen 140 EEAFERVRPLLEAMGKN 156 (163)
T ss_dssp HHHHHHHHHHHHHHEEE
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 33333444444444433
No 328
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=24.48 E-value=5.2e+02 Score=23.18 Aligned_cols=100 Identities=13% Similarity=0.114 Sum_probs=49.4
Q ss_pred HHHHHHcCCeEEEEcccHHHHHHHHHH--CCCCCCCCCCccChhhh-hhcCCCC-EEEEecCCCccHHHHHH-HHhcCCC
Q 045468 51 KAAADLTGRKLVFVGMSLRTYLDAAWK--DGKAPIDPSTLVKVEDI-DAYAPKD-LLIVTTGSQAEPRAALN-LASYGGS 125 (221)
Q Consensus 51 ~~~a~~~gR~~vi~~~~~~~~~~~~~~--~g~~~~~~~~~v~~~~~-~~~~~~~-~vi~~~g~~~e~~~~l~-~~~~~~~ 125 (221)
+.-....|.+++++.|....+-+.+.+ .|..-.. ..++++. ..+++++ +++++.. |.+...+- .+.-
T Consensus 22 iLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~g---a~S~ed~v~klk~PR~iillvkA--G~pVD~~I~~L~p--- 93 (487)
T KOG2653|consen 22 ILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIG---AYSLEDFVSKLKKPRVIILLVKA--GAPVDQFIEELVP--- 93 (487)
T ss_pred hhcccccCceEEEeccchHhHHHHHHHhhcCCcccC---CCCHHHHHHhcCCCcEEEEEeeC--CCcHHHHHHHHHh---
Confidence 333445688999999887666555443 1211110 1123322 2333333 3344332 33333322 1111
Q ss_pred CCcccCCCCEEEEEecCCC-CcHHHHHHHHHHHHHcCCeEE
Q 045468 126 HSLKLTNEDVILYSAKVIP-GNESRVMKMLNRISEIGSTIV 165 (221)
Q Consensus 126 ~~~~~~~~~~vI~s~~~~p-g~e~~~~~~~~~l~~~g~~v~ 165 (221)
-++++|.+|=.+..+. .++.+ -..+.+.|+-++
T Consensus 94 ---~LekgDiIIDGGNs~y~dT~RR----~~el~k~Gilfv 127 (487)
T KOG2653|consen 94 ---YLEKGDIIIDGGNSEYQDTERR----CRELAKKGILFV 127 (487)
T ss_pred ---hcCCCCEEEeCCcccCcchHHH----HHHHHhcCcEEE
Confidence 1457888876665433 34443 366788888666
No 329
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=24.48 E-value=4.2e+02 Score=22.15 Aligned_cols=67 Identities=21% Similarity=0.245 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcC---CCEEEEcCC--ChHHHHHHHHHHHhcCCC
Q 045468 148 SRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVK---PQHFLPIHG--ELLFLKEHELLGRSTGIR 218 (221)
Q Consensus 148 ~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~---Pk~iiPVHg--e~~~~~~~~~~~~~~g~~ 218 (221)
.....+...+.+.|++.+. ...+.|.+.|.++.++++.++ |..-|=+|+ ..-...+++-.|.+.|..
T Consensus 149 ~~~~~~~~~~~~~Ga~~i~----l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~ 220 (274)
T cd07938 149 ERVAEVAERLLDLGCDEIS----LGDTIGVATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVR 220 (274)
T ss_pred HHHHHHHHHHHHcCCCEEE----ECCCCCccCHHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCCC
Confidence 4455677788888997763 577899999999999999995 333344555 556777777788899864
No 330
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=24.39 E-value=4.8e+02 Score=22.82 Aligned_cols=137 Identities=20% Similarity=0.150 Sum_probs=72.7
Q ss_pred CcEEEEeccccHHHHHHHHHHHHHcCCeEEEEcccHHHHHHHHHHCCC---CCCCCCCccChhhhhhcCC-CCEEEEecC
Q 045468 33 GRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGK---APIDPSTLVKVEDIDAYAP-KDLLIVTTG 108 (221)
Q Consensus 33 g~viv~~~a~ni~Rl~~i~~~a~~~gR~~vi~~~~~~~~~~~~~~~g~---~~~~~~~~v~~~~~~~~~~-~~~vi~~~g 108 (221)
.+|.|.-+. =++- -.++.|+..|..++..+++- .-.+.+.+.|- ++.. +.+.....++ -+.++.+.+
T Consensus 168 ~~V~I~G~G-GlGh--~avQ~Aka~ga~Via~~~~~-~K~e~a~~lGAd~~i~~~-----~~~~~~~~~~~~d~ii~tv~ 238 (339)
T COG1064 168 KWVAVVGAG-GLGH--MAVQYAKAMGAEVIAITRSE-EKLELAKKLGADHVINSS-----DSDALEAVKEIADAIIDTVG 238 (339)
T ss_pred CEEEEECCc-HHHH--HHHHHHHHcCCeEEEEeCCh-HHHHHHHHhCCcEEEEcC-----CchhhHHhHhhCcEEEECCC
Confidence 467776666 3544 45788998999888887774 55566767652 1111 1111121111 244555545
Q ss_pred CCccHHHHHHHHhcCCCCCcccCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHH
Q 045468 109 SQAEPRAALNLASYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLK 188 (221)
Q Consensus 109 ~~~e~~~~l~~~~~~~~~~~~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~ 188 (221)
...+..++.- ++++++++..+...++.... .. ...+...+..+. -|-..++.|+.++++
T Consensus 239 -~~~~~~~l~~----------l~~~G~~v~vG~~~~~~~~~-~~-~~~li~~~~~i~--------GS~~g~~~d~~e~l~ 297 (339)
T COG1064 239 -PATLEPSLKA----------LRRGGTLVLVGLPGGGPIPL-LP-AFLLILKEISIV--------GSLVGTRADLEEALD 297 (339)
T ss_pred -hhhHHHHHHH----------HhcCCEEEEECCCCCcccCC-CC-HHHhhhcCeEEE--------EEecCCHHHHHHHHH
Confidence 4444555543 23678888888532111110 00 122333344443 466677888888888
Q ss_pred HcCCCEEEEcC
Q 045468 189 LVKPQHFLPIH 199 (221)
Q Consensus 189 ~i~Pk~iiPVH 199 (221)
...=..+-|.=
T Consensus 298 f~~~g~Ikp~i 308 (339)
T COG1064 298 FAAEGKIKPEI 308 (339)
T ss_pred HHHhCCceeeE
Confidence 87444444443
No 331
>PRK15482 transcriptional regulator MurR; Provisional
Probab=24.36 E-value=4.1e+02 Score=22.02 Aligned_cols=34 Identities=18% Similarity=0.327 Sum_probs=26.2
Q ss_pred cCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEE
Q 045468 130 LTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIV 165 (221)
Q Consensus 130 ~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~ 165 (221)
++++|++|.-+. +|+-++...+.....+.|++++
T Consensus 180 ~~~~Dv~i~iS~--sg~t~~~~~~~~~a~~~g~~iI 213 (285)
T PRK15482 180 LKKGDVQIAISY--SGSKKEIVLCAEAARKQGATVI 213 (285)
T ss_pred CCCCCEEEEEeC--CCCCHHHHHHHHHHHHCCCEEE
Confidence 357888877774 4776666788888899999887
No 332
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=24.16 E-value=3.3e+02 Score=24.25 Aligned_cols=39 Identities=18% Similarity=0.075 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHhcCC
Q 045468 179 YRGELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGI 217 (221)
Q Consensus 179 ~~~dL~~~i~~i~Pk~iiPVHge~~~~~~~~~~~~~~g~ 217 (221)
+.+.|.++++..++..++|-+|...+....+..+.+.|+
T Consensus 62 d~~~l~~~~~~~~id~I~p~~~~~~e~~~~~~~~~~~g~ 100 (450)
T PRK06111 62 NLEKIIEIAKKTGAEAIHPGYGLLSENASFAERCKEEGI 100 (450)
T ss_pred CHHHHHHHHHHhCCCEEEeCCCccccCHHHHHHHHHCCC
Confidence 456777777777888888776432222234445555554
No 333
>COG1540 Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]
Probab=23.90 E-value=73 Score=26.39 Aligned_cols=20 Identities=15% Similarity=0.047 Sum_probs=17.6
Q ss_pred EEEEcCCChHHHHHHHHHHH
Q 045468 194 HFLPIHGELLFLKEHELLGR 213 (221)
Q Consensus 194 ~iiPVHge~~~~~~~~~~~~ 213 (221)
..|.|||+.|+..++++.++
T Consensus 219 dsiCvHGD~p~Al~~~~riR 238 (252)
T COG1540 219 DSICVHGDNPHALAFARRIR 238 (252)
T ss_pred ceEEEcCCCHHHHHHHHHHH
Confidence 46899999999999999776
No 334
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=23.80 E-value=4.7e+02 Score=22.43 Aligned_cols=15 Identities=13% Similarity=0.430 Sum_probs=7.9
Q ss_pred HHHHHHHHHcCCeEE
Q 045468 151 MKMLNRISEIGSTIV 165 (221)
Q Consensus 151 ~~~~~~l~~~g~~v~ 165 (221)
..+++.+...+++-+
T Consensus 70 ~~~i~~li~~~vdgI 84 (336)
T PRK15408 70 VQLINNFVNQGYNAI 84 (336)
T ss_pred HHHHHHHHHcCCCEE
Confidence 345555555565543
No 335
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=23.69 E-value=2.1e+02 Score=20.17 Aligned_cols=34 Identities=18% Similarity=0.371 Sum_probs=24.5
Q ss_pred cCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEE
Q 045468 130 LTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIV 165 (221)
Q Consensus 130 ~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~ 165 (221)
++++|++|.-+. .|+-++.........+.|++++
T Consensus 44 ~~~~d~~I~iS~--sG~t~e~~~~~~~a~~~g~~vi 77 (126)
T cd05008 44 LDEDTLVIAISQ--SGETADTLAALRLAKEKGAKTV 77 (126)
T ss_pred CCCCcEEEEEeC--CcCCHHHHHHHHHHHHcCCeEE
Confidence 357787777664 3766666677788888898887
No 336
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=23.67 E-value=2.4e+02 Score=19.02 Aligned_cols=45 Identities=13% Similarity=0.120 Sum_probs=33.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHHHHcCC
Q 045468 12 GRTTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGR 59 (221)
Q Consensus 12 ~~~~sE~~v~~~i~~~~~~~~g~viv~~~a~ni~Rl~~i~~~a~~~gR 59 (221)
+.+.|+.++.+.+.+-|-+ .--+=+|+++|++ +.++++...+.|+
T Consensus 15 ~~~~t~~~L~~~i~~~FG~--~arFhTCSa~~m~-a~~Li~FL~~kgK 59 (77)
T TIGR03853 15 GEPYTRESLKAAIEQKFGE--DARFHTCSAEGMT-ADELLQFLLKKGK 59 (77)
T ss_pred CCCcCHHHHHHHHHHHhCC--CceEeecccccCC-HHHHHHHHHHCCC
Confidence 5567888998888887743 4678889988874 5566666667776
No 337
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=23.63 E-value=2.4e+02 Score=24.07 Aligned_cols=47 Identities=15% Similarity=-0.022 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHHhcCC--cEEEEeccccHHHHHHHHHHHHHcCCe
Q 045468 14 TTSESVVKDALMRHVSAAKG--RVITTQFASNIHRLGSVKAAADLTGRK 60 (221)
Q Consensus 14 ~~sE~~v~~~i~~~~~~~~g--~viv~~~a~ni~Rl~~i~~~a~~~gR~ 60 (221)
..|.+|-.+.++.+.+..+| .|++.+.+.+.+-...+.+.|.+.|=.
T Consensus 57 ~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad 105 (309)
T cd00952 57 TLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGAD 105 (309)
T ss_pred hCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCC
Confidence 45666655555555444444 568888888899999999999999863
No 338
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=23.60 E-value=3.7e+02 Score=24.76 Aligned_cols=39 Identities=21% Similarity=0.081 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHhcCC
Q 045468 179 YRGELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGI 217 (221)
Q Consensus 179 ~~~dL~~~i~~i~Pk~iiPVHge~~~~~~~~~~~~~~g~ 217 (221)
+.+.|.++++..++..++|-+|+..+-..+++.+.+.|+
T Consensus 62 d~~~i~~~a~~~~~daI~pg~gflsE~~~~a~~~e~~gi 100 (499)
T PRK08654 62 NIERIIDVAKKAGADAIHPGYGFLAENPEFAKACEKAGI 100 (499)
T ss_pred CHHHHHHHHHHhCCCEEEECCCccccCHHHHHHHHHCCC
Confidence 457788888888888888888754444455666666665
No 339
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=23.60 E-value=4.5e+02 Score=22.19 Aligned_cols=24 Identities=17% Similarity=-0.003 Sum_probs=17.9
Q ss_pred CCEEEEecCCCccHHHHHHHHhcC
Q 045468 100 KDLLIVTTGSQAEPRAALNLASYG 123 (221)
Q Consensus 100 ~~~vi~~~g~~~e~~~~l~~~~~~ 123 (221)
.++.+++||....+.+.+.++..+
T Consensus 85 ~ki~vl~Sg~g~nl~~l~~~~~~g 108 (280)
T TIGR00655 85 KRVAILVSKEDHCLGDLLWRWYSG 108 (280)
T ss_pred cEEEEEEcCCChhHHHHHHHHHcC
Confidence 478899999877777777766555
No 340
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=23.49 E-value=1.9e+02 Score=24.68 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=26.5
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHHcCCeEEEE
Q 045468 32 KGRVITTQFASNIHRLGSVKAAADLTGRKLVFV 64 (221)
Q Consensus 32 ~g~viv~~~a~ni~Rl~~i~~~a~~~gR~~vi~ 64 (221)
.+..+-.+-..|++-+..++++|.+.+.++++.
T Consensus 16 ~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq 48 (288)
T TIGR00167 16 EGYAIPAFNINNLETINAVLEAAAEEKSPVIIQ 48 (288)
T ss_pred CCceEEEEEECCHHHHHHHHHHHHHHCCCEEEE
Confidence 455555555578999999999999999988885
No 341
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=23.48 E-value=2.2e+02 Score=20.16 Aligned_cols=50 Identities=24% Similarity=0.432 Sum_probs=33.3
Q ss_pred cCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcC
Q 045468 130 LTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVK 191 (221)
Q Consensus 130 ~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~ 191 (221)
++++|++|.-|. .|+.++.....+...+.|++++ -+ ++. .+|.++.+..+
T Consensus 41 ~~~~dl~I~iS~--SG~t~e~i~~~~~a~~~g~~iI-----~I-T~~----~~l~~~~~~~~ 90 (119)
T cd05017 41 VDRKTLVIAVSY--SGNTEETLSAVEQAKERGAKIV-----AI-TSG----GKLLEMAREHG 90 (119)
T ss_pred CCCCCEEEEEEC--CCCCHHHHHHHHHHHHCCCEEE-----EE-eCC----chHHHHHHHcC
Confidence 347888877774 3776666677788888999887 22 321 14777777663
No 342
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=23.45 E-value=3.4e+02 Score=22.83 Aligned_cols=79 Identities=20% Similarity=0.247 Sum_probs=44.1
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCC--HHHHHHHHHHcCCCEEEEcCCChHHHHHHH
Q 045468 132 NEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGY--RGELEEVLKLVKPQHFLPIHGELLFLKEHE 209 (221)
Q Consensus 132 ~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~--~~dL~~~i~~i~Pk~iiPVHge~~~~~~~~ 209 (221)
+++.|++++..-||-. .+..|-.+...+-+..-...+|.+|=+. .+...++++.+.|+.+.|-|=.-. .+..
T Consensus 165 ~~GlvvItGCsH~GI~----niv~~~~~~~g~rv~~ViGGFHL~~~~~~~l~~~~~~l~el~v~~i~pcHCTg~--~a~~ 238 (259)
T COG1237 165 EKGLVVITGCSHPGIV----NIVEWAKERSGDRVKAVIGGFHLIGASEERLEEVADYLKELGVEKIYPCHCTGE--KAKR 238 (259)
T ss_pred CCceEEEEcCCcccHH----HHHHHHHHhccceeEEEeeeeccCCCcHHHHHHHHHHHHhcCCCeEEecCCCCH--HHHH
Confidence 3567888888777732 2233333322211111124799888663 234556666778999999997633 2333
Q ss_pred HHHHhcC
Q 045468 210 LLGRSTG 216 (221)
Q Consensus 210 ~~~~~~g 216 (221)
.+.++.|
T Consensus 239 ~l~~~~~ 245 (259)
T COG1237 239 YLRRVFG 245 (259)
T ss_pred HHHHHcC
Confidence 3444444
No 343
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=23.36 E-value=4e+02 Score=27.20 Aligned_cols=66 Identities=11% Similarity=-0.030 Sum_probs=43.7
Q ss_pred HHHHHHHHHcCCeEEecCCceeeeec-----------CCCHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHhcCC
Q 045468 151 MKMLNRISEIGSTIVMGRNEGLHTSG-----------HGYRGELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGI 217 (221)
Q Consensus 151 ~~~~~~l~~~g~~v~~~~~~~~h~SG-----------HA~~~dL~~~i~~i~Pk~iiPVHge~~~~~~~~~~~~~~g~ 217 (221)
......|.+.|.+++......-..|- -.+.+++..+++.-+|..+||.-|+. ....+++.+.+.|+
T Consensus 579 v~~~~aLk~~G~~vI~vn~npetvs~~~~~aD~~y~ep~~~e~vl~I~~~e~~dgVI~~~g~~-~~~~la~~le~~Gi 655 (1068)
T PRK12815 579 VHAAFALKKEGYETIMINNNPETVSTDYDTADRLYFEPLTLEDVLNVAEAENIKGVIVQFGGQ-TAINLAKGLEEAGL 655 (1068)
T ss_pred HHHHHHHHHcCCEEEEEeCCccccccccccCceEEEccCCHHHHHHHHhhcCCCEEEEecCcH-HHHHHHHHHHHCCC
Confidence 34567889999988743211111111 23568999999999999999976664 34556666666775
No 344
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=23.28 E-value=2.9e+02 Score=25.38 Aligned_cols=68 Identities=13% Similarity=0.102 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcC--CCEEEEcCC--ChHHHHHHHHHHHhcCCC
Q 045468 147 ESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVK--PQHFLPIHG--ELLFLKEHELLGRSTGIR 218 (221)
Q Consensus 147 e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~--Pk~iiPVHg--e~~~~~~~~~~~~~~g~~ 218 (221)
...+..+...+.+.|++.+. .-.+.|-+.+++..++++.++ |..-|=+|+ ..-...++.-.|.+.|+.
T Consensus 162 ~~y~~~~a~~l~~~Gad~I~----IkDtaG~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~An~laAieAGad 233 (468)
T PRK12581 162 LNYYLSLVKELVEMGADSIC----IKDMAGILTPKAAKELVSGIKAMTNLPLIVHTHATSGISQMTYLAAVEAGAD 233 (468)
T ss_pred HHHHHHHHHHHHHcCCCEEE----ECCCCCCcCHHHHHHHHHHHHhccCCeEEEEeCCCCccHHHHHHHHHHcCCC
Confidence 34456677888899998773 567899999999999999995 333344555 444566666677788864
No 345
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=23.28 E-value=4e+02 Score=21.51 Aligned_cols=68 Identities=19% Similarity=0.230 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCC---CEEEEcCC--ChHHHHHHHHHHHhcCCC
Q 045468 147 ESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKP---QHFLPIHG--ELLFLKEHELLGRSTGIR 218 (221)
Q Consensus 147 e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~P---k~iiPVHg--e~~~~~~~~~~~~~~g~~ 218 (221)
......+...+.+.|+..+. ...+.|.++++++.++++.++. ..-+=+|+ ..-...+++-.|.+.|+.
T Consensus 145 ~~~l~~~~~~~~~~g~~~i~----l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~ 217 (265)
T cd03174 145 PEYVLEVAKALEEAGADEIS----LKDTVGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGAD 217 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEE----echhcCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCC
Confidence 34566788888999997763 5668999999999999999853 24444555 556777777788888864
No 346
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.22 E-value=3.6e+02 Score=22.98 Aligned_cols=35 Identities=11% Similarity=0.165 Sum_probs=23.7
Q ss_pred HHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcC
Q 045468 152 KMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVK 191 (221)
Q Consensus 152 ~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~ 191 (221)
.-.....+.|++.. .++++.+.+.+||.+.|+.+|
T Consensus 51 ~k~k~~~~~Gi~~~-----~~~l~~~~~~~~l~~~I~~lN 85 (286)
T PRK14184 51 NKERACEDAGIVSE-----AFRLPADTTQEELEDLIAELN 85 (286)
T ss_pred HHHHHHHHcCCEEE-----EEECCCCCCHHHHHHHHHHHh
Confidence 34456666777664 567777777777777777774
No 347
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=23.20 E-value=2.2e+02 Score=24.26 Aligned_cols=34 Identities=15% Similarity=0.004 Sum_probs=28.8
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHHcCCeEEEEc
Q 045468 32 KGRVITTQFASNIHRLGSVKAAADLTGRKLVFVG 65 (221)
Q Consensus 32 ~g~viv~~~a~ni~Rl~~i~~~a~~~gR~~vi~~ 65 (221)
++..+..+-..|++-+..++++|.+.+.++++..
T Consensus 16 ~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIl~~ 49 (283)
T PRK07998 16 KHVLAGAFNTTNLETTISILNAIERSGLPNFIQI 49 (283)
T ss_pred CCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEEC
Confidence 4667766667889999999999999999999864
No 348
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=23.18 E-value=2.7e+02 Score=19.36 Aligned_cols=64 Identities=19% Similarity=0.223 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHhcC---------CcEEEEecc------ccHHHHHHHHHHHHHcCCeEEEEcccHHHHHHHHHHCCC
Q 045468 16 SESVVKDALMRHVSAAK---------GRVITTQFA------SNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGK 80 (221)
Q Consensus 16 sE~~v~~~i~~~~~~~~---------g~viv~~~a------~ni~Rl~~i~~~a~~~gR~~vi~~~~~~~~~~~~~~~g~ 80 (221)
+...+.+.+.+.+...+ ..|++.+.. +=+.-|..+.+.+++.|.++++.+-.- .....+...|+
T Consensus 23 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgi~~L~~~~~~~~~~g~~~~l~~~~~-~v~~~l~~~~~ 101 (117)
T PF01740_consen 23 NAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSGVSFIDSSGIQALVDIIKELRRRGVQLVLVGLNP-DVRRILERSGL 101 (117)
T ss_dssp HHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETTESEESHHHHHHHHHHHHHHHHTTCEEEEESHHH-HHHHHHHHTTG
T ss_pred HHHHHHHHHHHhhhcccccccccccceEEEEEEEeCCcCCHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHHHHcCC
Confidence 45678888888776543 578887743 336778888888998999999998653 45555555553
No 349
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=23.17 E-value=4.5e+02 Score=22.06 Aligned_cols=101 Identities=11% Similarity=0.130 Sum_probs=49.8
Q ss_pred HHHHHHHHcCCeEEEEcccHHHHHHHHHHCCCCCCCCCCccChhhhh-hcCCCCEEEEecCCCccHHHHHHHHhcCCCCC
Q 045468 49 SVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKVEDID-AYAPKDLLIVTTGSQAEPRAALNLASYGGSHS 127 (221)
Q Consensus 49 ~i~~~a~~~gR~~vi~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~-~~~~~~~vi~~~g~~~e~~~~l~~~~~~~~~~ 127 (221)
.+.....+.|..++++++.... .+.+.+.|.... .+..+.. ......+++++.... .....+..+..
T Consensus 14 ~la~~L~~~g~~V~~~dr~~~~-~~~l~~~g~~~~-----~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~~~l~~----- 81 (298)
T TIGR00872 14 NIVRRLAKRGHDCVGYDHDQDA-VKAMKEDRTTGV-----ANLRELSQRLSAPRVVWVMVPHG-IVDAVLEELAP----- 81 (298)
T ss_pred HHHHHHHHCCCEEEEEECCHHH-HHHHHHcCCccc-----CCHHHHHhhcCCCCEEEEEcCch-HHHHHHHHHHh-----
Confidence 3455555677778778777643 333434342211 1233322 223345666665443 22333333332
Q ss_pred cccCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEE
Q 045468 128 LKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIV 165 (221)
Q Consensus 128 ~~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~ 165 (221)
.+++++++|-.+...|. ...++...+...|+.++
T Consensus 82 -~l~~g~ivid~st~~~~---~t~~~~~~~~~~g~~~v 115 (298)
T TIGR00872 82 -TLEKGDIVIDGGNSYYK---DSLRRYKLLKEKGIHLL 115 (298)
T ss_pred -hCCCCCEEEECCCCCcc---cHHHHHHHHHhcCCeEE
Confidence 13466666665554333 22334567777888776
No 350
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=22.93 E-value=1.6e+02 Score=24.18 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHcCCeEEEEcc
Q 045468 46 RLGSVKAAADLTGRKLVFVGM 66 (221)
Q Consensus 46 Rl~~i~~~a~~~gR~~vi~~~ 66 (221)
.++.++++|.+.|.-+-+..+
T Consensus 148 ~~~~~~~~~~~~g~aleins~ 168 (237)
T COG1387 148 DIEELIELAEKNGKALEINSR 168 (237)
T ss_pred HHHHHHHHHHHhCcEEeecCC
Confidence 455666666676665555443
No 351
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=22.75 E-value=2.1e+02 Score=24.32 Aligned_cols=33 Identities=12% Similarity=0.129 Sum_probs=26.8
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHHcCCeEEEE
Q 045468 32 KGRVITTQFASNIHRLGSVKAAADLTGRKLVFV 64 (221)
Q Consensus 32 ~g~viv~~~a~ni~Rl~~i~~~a~~~gR~~vi~ 64 (221)
++..+..+-..|++-+..++++|.+.+.++++.
T Consensus 16 ~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq 48 (284)
T PRK09195 16 GGYAVPAFNIHNLETMQVVVETAAELHSPVIIA 48 (284)
T ss_pred cCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEE
Confidence 456665555678999999999999999988885
No 352
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=22.74 E-value=5.5e+02 Score=23.01 Aligned_cols=66 Identities=11% Similarity=0.127 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcC---CC-EEEEcCCChHHHHHHHHHHHhcCCC
Q 045468 149 RVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVK---PQ-HFLPIHGELLFLKEHELLGRSTGIR 218 (221)
Q Consensus 149 ~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~---Pk-~iiPVHge~~~~~~~~~~~~~~g~~ 218 (221)
....+...+.+.|+.+.. ..-.+-.....|+...+..++ |+ .+|.+.++..+...+.+.|++.|+.
T Consensus 202 ~~~~~~~~~~~~gi~i~~----~~~i~~~~~~~d~~~~l~~lk~~~~da~vvv~~~~~~~~~~~l~~a~~~g~~ 271 (472)
T cd06374 202 GMEAFKELAAHEGLCIAH----SDKIYSNAGEQSFDRLLRKLRSRLPKARVVVCFCEGMTVRGLLMAMRRLGVG 271 (472)
T ss_pred HHHHHHHHHHHCCeeEEE----EEEecCCCchHHHHHHHHHHHhcCCCcEEEEEEechHHHHHHHHHHHHhcCC
Confidence 345677888889988762 111122345577777777774 65 4566677777888888888888875
No 353
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=22.59 E-value=2.2e+02 Score=24.29 Aligned_cols=33 Identities=9% Similarity=0.108 Sum_probs=27.1
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHHcCCeEEEE
Q 045468 32 KGRVITTQFASNIHRLGSVKAAADLTGRKLVFV 64 (221)
Q Consensus 32 ~g~viv~~~a~ni~Rl~~i~~~a~~~gR~~vi~ 64 (221)
++..+..+-..|++-+..++++|.+.+.++++.
T Consensus 16 ~~yAV~AfN~~n~e~~~avi~AAee~~sPvIl~ 48 (286)
T PRK08610 16 NGYAVGQYNLNNLEFTQAILEASQEENAPVILG 48 (286)
T ss_pred CCceEEEEEECCHHHHHHHHHHHHHHCCCEEEE
Confidence 456665555678999999999999999998885
No 354
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=22.55 E-value=4.7e+02 Score=22.05 Aligned_cols=68 Identities=22% Similarity=0.176 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcC---CCEEEEcCC--ChHHHHHHHHHHHhcCCC
Q 045468 147 ESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVK---PQHFLPIHG--ELLFLKEHELLGRSTGIR 218 (221)
Q Consensus 147 e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~---Pk~iiPVHg--e~~~~~~~~~~~~~~g~~ 218 (221)
......+...+...|++.+. ...+.|.+.|.++.++++.++ |..-|-+|+ ..-...+++-.|.+.|+.
T Consensus 154 ~~~~~~~~~~~~~~G~d~i~----l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~~ 226 (287)
T PRK05692 154 PEAVADVAERLFALGCYEIS----LGDTIGVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGIT 226 (287)
T ss_pred HHHHHHHHHHHHHcCCcEEE----eccccCccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhCCC
Confidence 34566777888889998773 577999999999999999985 323344454 566777777788888864
No 355
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=22.49 E-value=66 Score=24.80 Aligned_cols=38 Identities=3% Similarity=0.105 Sum_probs=27.1
Q ss_pred HHHHHHHcCCeEEe-cC---CceeeeecCCCHHHHHHHHHHc
Q 045468 153 MLNRISEIGSTIVM-GR---NEGLHTSGHGYRGELEEVLKLV 190 (221)
Q Consensus 153 ~~~~l~~~g~~v~~-~~---~~~~h~SGHA~~~dL~~~i~~i 190 (221)
++-...+.|++++. .+ ...+=-+|||++++...|++.+
T Consensus 85 illa~~~~~ipv~Ey~P~~vKkavtG~G~A~KeQV~~mV~~l 126 (156)
T TIGR00228 85 AIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRRL 126 (156)
T ss_pred HHHHHHHcCCCEEEECHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 45667778888872 11 1223458999999999999966
No 356
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.47 E-value=4e+02 Score=21.17 Aligned_cols=14 Identities=0% Similarity=-0.168 Sum_probs=7.0
Q ss_pred HHHHHHHHHcCCeE
Q 045468 151 MKMLNRISEIGSTI 164 (221)
Q Consensus 151 ~~~~~~l~~~g~~v 164 (221)
....+.+...+++-
T Consensus 46 ~~~~~~l~~~~vdg 59 (275)
T cd06317 46 AAQVEDLIAQKVDG 59 (275)
T ss_pred HHHHHHHHHcCCCE
Confidence 34445555555543
No 357
>PF14062 DUF4253: Domain of unknown function (DUF4253)
Probab=22.46 E-value=2.8e+02 Score=19.82 Aligned_cols=53 Identities=15% Similarity=-0.029 Sum_probs=39.5
Q ss_pred CcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCH---HHHHHHHHHc---CCCEEEE
Q 045468 145 GNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR---GELEEVLKLV---KPQHFLP 197 (221)
Q Consensus 145 g~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~---~dL~~~i~~i---~Pk~iiP 197 (221)
.++...+.+..|-.+.|++++....+.++++=-+.+ +|...+.... -|..+-.
T Consensus 28 ~~~~~~a~lr~W~er~ga~i~~i~~d~le~~v~~pP~~~~ea~~lA~E~y~fCpD~v~q 86 (111)
T PF14062_consen 28 DTADIIAVLRYWEERYGAEIVGIGFDTLELSVARPPQTPEEAEALAAEHYAFCPDIVDQ 86 (111)
T ss_pred CHHHHHHHHHHHHHHhCEEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHhCccHHhc
Confidence 456677888999999999888555557777877777 8888887766 5665544
No 358
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=22.46 E-value=2.8e+02 Score=21.85 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=29.4
Q ss_pred HHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEE
Q 045468 152 KMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHF 195 (221)
Q Consensus 152 ~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~i 195 (221)
.....|.+.|+.++ -+..-.++++..+.++.+.-.|.+-
T Consensus 152 ~~a~~l~~~GI~i~-----tVGiG~~~d~~~~~~L~~ias~~~~ 190 (193)
T cd01477 152 PIAARLKSTGIAII-----TVAFTQDESSNLLDKLGKIASPGMN 190 (193)
T ss_pred HHHHHHHHCCCEEE-----EEEeCCCCCHHHHHHHHHhcCCCCC
Confidence 45567889999988 5666778888888887777666543
No 359
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=22.44 E-value=1.9e+02 Score=21.94 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcccHHHHHHHHH
Q 045468 44 IHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAW 76 (221)
Q Consensus 44 i~Rl~~i~~~a~~~gR~~vi~~~~~~~~~~~~~ 76 (221)
-.|...+++.|++.|-.+++.|..+....+.+.
T Consensus 92 ~~r~~~l~~~a~~~g~~~l~~Gh~~dD~~et~l 124 (185)
T cd01993 92 VLRRGLLNKIAKELGADKLATGHNLDDEAETLL 124 (185)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCChHHHHHHHH
Confidence 457788899999999999999998887776554
No 360
>TIGR03586 PseI pseudaminic acid synthase.
Probab=22.42 E-value=5.2e+02 Score=22.44 Aligned_cols=137 Identities=15% Similarity=0.102 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcccHHHHHHHHHHCC--CCCCCCCCccChhhhhhc-CCCCEEEEecCCC--ccHHHHHH
Q 045468 44 IHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDG--KAPIDPSTLVKVEDIDAY-APKDLLIVTTGSQ--AEPRAALN 118 (221)
Q Consensus 44 i~Rl~~i~~~a~~~gR~~vi~~~~~~~~~~~~~~~g--~~~~~~~~~v~~~~~~~~-~~~~~vi~~~g~~--~e~~~~l~ 118 (221)
.+-..++.+.|+++|-.++-..... .-++.+.+.| .++........++-++.. ....-|++.||+. .|....+.
T Consensus 76 ~e~~~~L~~~~~~~Gi~~~stpfd~-~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~~t~~Ei~~Av~ 154 (327)
T TIGR03586 76 WEWHKELFERAKELGLTIFSSPFDE-TAVDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGIATLEEIQEAVE 154 (327)
T ss_pred HHHHHHHHHHHHHhCCcEEEccCCH-HHHHHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECCCCCHHHHHHHHH
Confidence 4445678889999999888766554 3334444432 222221112223322222 1233478889973 33333343
Q ss_pred HHh-cCCCCCcccCCCCEEEE---EecCCCCcHHHHHHHHHHHHH-cCCeEEecCCceeeeecCCCHHHHHHHHHHcCCC
Q 045468 119 LAS-YGGSHSLKLTNEDVILY---SAKVIPGNESRVMKMLNRISE-IGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQ 193 (221)
Q Consensus 119 ~~~-~~~~~~~~~~~~~~vI~---s~~~~pg~e~~~~~~~~~l~~-~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk 193 (221)
.+. .+ ..+.+++ |+|+.|-++... ..+..|.+ ++.+| ..|.|.....+-...-.+..+
T Consensus 155 ~i~~~g--------~~~i~LlhC~s~YP~~~~~~nL-~~i~~lk~~f~~pV--------G~SDHt~G~~~~~aAva~GA~ 217 (327)
T TIGR03586 155 ACREAG--------CKDLVLLKCTSSYPAPLEDANL-RTIPDLAERFNVPV--------GLSDHTLGILAPVAAVALGAC 217 (327)
T ss_pred HHHHCC--------CCcEEEEecCCCCCCCcccCCH-HHHHHHHHHhCCCE--------EeeCCCCchHHHHHHHHcCCC
Confidence 332 22 1233332 333333222222 23344443 45433 347777665555555555554
Q ss_pred EEEEcC
Q 045468 194 HFLPIH 199 (221)
Q Consensus 194 ~iiPVH 199 (221)
+|=.|
T Consensus 218 -iIEkH 222 (327)
T TIGR03586 218 -VIEKH 222 (327)
T ss_pred -EEEeC
Confidence 55444
No 361
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=22.39 E-value=2.7e+02 Score=23.45 Aligned_cols=46 Identities=17% Similarity=0.055 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHHHhcCC--cEEEEeccccHHHHHHHHHHHHHcCC
Q 045468 14 TTSESVVKDALMRHVSAAKG--RVITTQFASNIHRLGSVKAAADLTGR 59 (221)
Q Consensus 14 ~~sE~~v~~~i~~~~~~~~g--~viv~~~a~ni~Rl~~i~~~a~~~gR 59 (221)
..|.+|-.+.++.+++..++ .|++.+.+.+.+-..+..+.|++.|=
T Consensus 50 ~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Ga 97 (290)
T TIGR00683 50 MLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGY 97 (290)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCC
Confidence 34555555555555544444 56777777788888888888888886
No 362
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=22.35 E-value=5.8e+02 Score=22.99 Aligned_cols=109 Identities=15% Similarity=0.106 Sum_probs=0.0
Q ss_pred hhhhhcCCCCEEEEecCCCccHHHHHHHHhcCCCCCcccCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCce
Q 045468 92 EDIDAYAPKDLLIVTTGSQAEPRAALNLASYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEG 171 (221)
Q Consensus 92 ~~~~~~~~~~~vi~~~g~~~e~~~~l~~~~~~~~~~~~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~ 171 (221)
+.+..+-....++.+.|...-....+.-+.. +||.| .+.+..+.+... ....|...+....+.
T Consensus 60 eaia~~~g~~~vv~t~~Gt~Al~la~~al~~---------pGD~V-~~~~~f~~~~~~-------i~~~Ga~pv~v~i~~ 122 (431)
T cd00617 60 DAVQDLFGFKHIIPTHQGRGAENILFSILLK---------PGRTV-PSNMHFDTTRGH-------IEANGAVPVDLVIDE 122 (431)
T ss_pred HHHHHHHCCCeEEEcCCHHHHHHHHHHHhCC---------CCCEE-ccCCcccchHHH-------HHhCCCEeEEEeccc
Q ss_pred ee-------eecCCCHHHHHHHHHHc---CCCEE---EEcCCC------hHHHHHHHHHHHhcCC
Q 045468 172 LH-------TSGHGYRGELEEVLKLV---KPQHF---LPIHGE------LLFLKEHELLGRSTGI 217 (221)
Q Consensus 172 ~h-------~SGHA~~~dL~~~i~~i---~Pk~i---iPVHge------~~~~~~~~~~~~~~g~ 217 (221)
-. +.|.-+.++|+..+..- +++.+ +|.|.. ..++.+.++++++.|+
T Consensus 123 ~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi 187 (431)
T cd00617 123 AHDAQELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGI 187 (431)
T ss_pred ccccccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCC
No 363
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act
Probab=22.33 E-value=5.1e+02 Score=22.31 Aligned_cols=31 Identities=13% Similarity=0.107 Sum_probs=25.1
Q ss_pred HHcCCCEEEEcCCChHHHHHHHHHHHhcCCCC
Q 045468 188 KLVKPQHFLPIHGELLFLKEHELLGRSTGIRH 219 (221)
Q Consensus 188 ~~i~Pk~iiPVHge~~~~~~~~~~~~~~g~~~ 219 (221)
+.-+|+.+| +|+.........+.|++.|++.
T Consensus 183 k~~~~~~iV-v~~~~~~a~~il~qa~~lGm~~ 213 (333)
T cd06394 183 RDDKTATII-IDANASMSHTILLKASELGMTS 213 (333)
T ss_pred HhcCCCEEE-EECChHHHHHHHHHHHHcCCCC
Confidence 444666665 7999999999999999999864
No 364
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=22.24 E-value=2e+02 Score=24.45 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=25.7
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHHcCCeEEEE
Q 045468 32 KGRVITTQFASNIHRLGSVKAAADLTGRKLVFV 64 (221)
Q Consensus 32 ~g~viv~~~a~ni~Rl~~i~~~a~~~gR~~vi~ 64 (221)
++..+..+-..|++-+..++++|.+.+.++++-
T Consensus 16 ~~yaV~AfNv~n~e~~~avi~AAee~~sPvIlq 48 (284)
T PRK12857 16 GGYAVGAFNCNNMEIVQAIVAAAEAEKSPVIIQ 48 (284)
T ss_pred cCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEE
Confidence 345544444567999999999999999988885
No 365
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=22.19 E-value=2.2e+02 Score=24.58 Aligned_cols=33 Identities=15% Similarity=0.108 Sum_probs=27.2
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHHcCCeEEEE
Q 045468 32 KGRVITTQFASNIHRLGSVKAAADLTGRKLVFV 64 (221)
Q Consensus 32 ~g~viv~~~a~ni~Rl~~i~~~a~~~gR~~vi~ 64 (221)
++..+-.+-.-|++-++.++++|.+.+.++++-
T Consensus 15 ~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIlq 47 (307)
T PRK05835 15 EGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQ 47 (307)
T ss_pred CCceEEEEEECCHHHHHHHHHHHHHHCCCEEEE
Confidence 456655555678999999999999999988885
No 366
>PLN02417 dihydrodipicolinate synthase
Probab=22.16 E-value=2.6e+02 Score=23.42 Aligned_cols=49 Identities=12% Similarity=-0.033 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHHHhcCC--cEEEEeccccHHHHHHHHHHHHHcCCeEE
Q 045468 14 TTSESVVKDALMRHVSAAKG--RVITTQFASNIHRLGSVKAAADLTGRKLV 62 (221)
Q Consensus 14 ~~sE~~v~~~i~~~~~~~~g--~viv~~~a~ni~Rl~~i~~~a~~~gR~~v 62 (221)
..|.+|-.+-++.+++..+| .|++.+.+.+..-..+..+.|++.|=.-+
T Consensus 50 ~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav 100 (280)
T PLN02417 50 LMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAA 100 (280)
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEE
Confidence 45666655555555554445 57888888889999999999999987433
No 367
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=22.14 E-value=2.7e+02 Score=24.12 Aligned_cols=34 Identities=15% Similarity=0.105 Sum_probs=27.5
Q ss_pred EeccccHHHHHHHHHHHHHcCCeEEEEcccHHHH
Q 045468 38 TQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTY 71 (221)
Q Consensus 38 ~~~a~ni~Rl~~i~~~a~~~gR~~vi~~~~~~~~ 71 (221)
+|+..+..+...++++|++.|-++++.|.....+
T Consensus 140 pc~~c~~~~~~~l~~~A~~~gi~~Il~G~~~dE~ 173 (343)
T TIGR03573 140 PEWPQDHAIFASVYQVALKFNIPLIIWGENIAEE 173 (343)
T ss_pred CchhhhhHHHHHHHHHHHHhCCCEEEeCCCHHHh
Confidence 5666667788889999999999999998877643
No 368
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=22.12 E-value=2.3e+02 Score=22.30 Aligned_cols=38 Identities=21% Similarity=0.433 Sum_probs=28.7
Q ss_pred HHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcC-CCEEEEc
Q 045468 154 LNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVK-PQHFLPI 198 (221)
Q Consensus 154 ~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~-Pk~iiPV 198 (221)
...+...|+++ +-++|-.|.+||+..++.+. |=.++|.
T Consensus 56 ~~~~~~~gv~v-------i~tpG~GYv~Dl~~al~~l~~P~lvvsa 94 (177)
T COG2266 56 KEYLESVGVKV-------IETPGEGYVEDLRFALESLGTPILVVSA 94 (177)
T ss_pred HHHHHhcCceE-------EEcCCCChHHHHHHHHHhcCCceEEEec
Confidence 34566667776 45899999999999999998 5555553
No 369
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=22.11 E-value=2.8e+02 Score=25.36 Aligned_cols=49 Identities=14% Similarity=0.099 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHHHHc--CCeEEEEcc
Q 045468 15 TSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLT--GRKLVFVGM 66 (221)
Q Consensus 15 ~sE~~v~~~i~~~~~~~~g~viv~~~a~ni~Rl~~i~~~a~~~--gR~~vi~~~ 66 (221)
.+..++.+.+.+ ..+..|.+++...++.+..++++.+++. +-++|+-|.
T Consensus 50 ~~~~~~~~~l~~---~~pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~iV~GG~ 100 (497)
T TIGR02026 50 LTDEKLVERLRA---HCPDLVLITAITPAIYIACETLKFARERLPNAIIVLGGI 100 (497)
T ss_pred CCHHHHHHHHHh---cCcCEEEEecCcccHHHHHHHHHHHHHHCCCCEEEEcCC
Confidence 454455444433 3578999999999999999999999987 556666554
No 370
>COG3636 Predicted transcriptional regulator [Transcription]
Probab=22.11 E-value=39 Score=23.86 Aligned_cols=44 Identities=14% Similarity=0.135 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHHHHcCC
Q 045468 15 TSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGR 59 (221)
Q Consensus 15 ~sE~~v~~~i~~~~~~~~g~viv~~~a~ni~Rl~~i~~~a~~~gR 59 (221)
.+|..+...+.+++++. +.-+|..--..+.|...+.++|+++|-
T Consensus 18 ~~ee~ia~yL~~~le~~-d~a~i~~alg~var~~GMsqvA~~aGl 61 (100)
T COG3636 18 TDEEAIAAYLNAALEEG-DPALIAAALGVVARSRGMSQVARKAGL 61 (100)
T ss_pred CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCHHHHHHHhCc
Confidence 68899999999998764 433333333468888888888888873
No 371
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=22.04 E-value=5.1e+02 Score=22.22 Aligned_cols=63 Identities=13% Similarity=0.082 Sum_probs=41.2
Q ss_pred HHHHHHHHHHcC--CeEEecCCceeeeecCCCHHHHHHHHHHc---CCCEEEEcCCChHHHHHHHHHHHhcCCC
Q 045468 150 VMKMLNRISEIG--STIVMGRNEGLHTSGHGYRGELEEVLKLV---KPQHFLPIHGELLFLKEHELLGRSTGIR 218 (221)
Q Consensus 150 ~~~~~~~l~~~g--~~v~~~~~~~~h~SGHA~~~dL~~~i~~i---~Pk~iiPVHge~~~~~~~~~~~~~~g~~ 218 (221)
...+...+.+.| +.+.. ..+ .+. ...+|....+..+ +|+.+| +++..++.....+-|++.|+.
T Consensus 142 ~~~~~~~~~~~g~~i~v~~---~~~-~~~-~~~~d~~~~L~~ik~~~~~~ii-l~~~~~~~~~i~~qa~~~gm~ 209 (382)
T cd06380 142 LQQLLDYLREKDNKWQVTA---RRV-DNV-TDEEEFLRLLEDLDRRKEKRIV-LDCESERLNKILEQIVDVGKN 209 (382)
T ss_pred HHHHHHHHhccCCceEEEE---EEe-cCC-CcHHHHHHHHHHhhcccceEEE-EECCHHHHHHHHHHHHHhhhc
Confidence 445667788888 55541 011 111 2346777777777 455554 578888999999999999975
No 372
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=21.98 E-value=1.9e+02 Score=24.56 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=27.4
Q ss_pred CccccCCCCCCCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 045468 1 MMSDSTNVLSPGRTTSESVVKDALMRHVSAAKGRVITT 38 (221)
Q Consensus 1 Li~EsT~~~~~~~~~sE~~v~~~i~~~~~~~~g~viv~ 38 (221)
.|+|||....++...-+.++.+.+.+.+++ +|.+++.
T Consensus 153 Ii~D~tdp~gp~~~Lft~eFy~~~~~~L~~-~Gi~v~q 189 (282)
T COG0421 153 IIVDSTDPVGPAEALFTEEFYEGCRRALKE-DGIFVAQ 189 (282)
T ss_pred EEEcCCCCCCcccccCCHHHHHHHHHhcCC-CcEEEEe
Confidence 367888875556667788999999998754 6766666
No 373
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=21.88 E-value=4.2e+02 Score=22.74 Aligned_cols=39 Identities=13% Similarity=0.070 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcC
Q 045468 148 SRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVK 191 (221)
Q Consensus 148 ~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~ 191 (221)
..........++.|++.. .++++...+.+||...|+.+|
T Consensus 55 ~Yv~~k~k~a~~~Gi~~~-----~~~l~~~~s~~el~~~I~~lN 93 (299)
T PLN02516 55 TYVNMKRKACAEVGIKSF-----DVDLPENISEAELISKVHELN 93 (299)
T ss_pred HHHHHHHHHHHHcCCEEE-----EEECCCCCCHHHHHHHHHHHh
Confidence 334445566777888775 677888888888888888884
No 374
>PRK06423 phosphoribosylformylglycinamidine synthase; Provisional
Probab=21.76 E-value=2.4e+02 Score=18.37 Aligned_cols=49 Identities=16% Similarity=0.296 Sum_probs=30.6
Q ss_pred CCC-cHHHHHHHHHHHHHcCCe-EEec-CCceeeeecCCCHHHHHHHHHHc--CC
Q 045468 143 IPG-NESRVMKMLNRISEIGST-IVMG-RNEGLHTSGHGYRGELEEVLKLV--KP 192 (221)
Q Consensus 143 ~pg-~e~~~~~~~~~l~~~g~~-v~~~-~~~~~h~SGHA~~~dL~~~i~~i--~P 192 (221)
-|| .++....+.+.+..+|.. +-.. ..+.+...| .+.+++..|++.+ ||
T Consensus 10 k~gv~Dp~G~ti~~~l~~lg~~~v~~Vr~~k~~~l~~-~~~~~~~~i~~~lL~Np 63 (73)
T PRK06423 10 KPGVEDPEALTILKNLNILGYNGIKGVSISKVYYFDA-DSYNEVDEIAGKILTNP 63 (73)
T ss_pred CCCCcChHHHHHHHHHHHcCCCCcceEEEEEEEEEec-CCHHHHHHHHHHhcCCc
Confidence 456 455555677777777653 1100 123577788 7888899998855 66
No 375
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=21.75 E-value=3.7e+02 Score=20.52 Aligned_cols=48 Identities=17% Similarity=0.147 Sum_probs=31.8
Q ss_pred HHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcC---CCEEEEcCCCh
Q 045468 150 VMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVK---PQHFLPIHGEL 202 (221)
Q Consensus 150 ~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~---Pk~iiPVHge~ 202 (221)
..+...-|.++|+.+- .--.|.|-.++++.++++.++ ++.+|-+=|-.
T Consensus 16 ~~~a~~~L~~~gi~~~-----~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~ 66 (150)
T PF00731_consen 16 AEEAAKTLEEFGIPYE-----VRVASAHRTPERLLEFVKEYEARGADVIIAVAGMS 66 (150)
T ss_dssp HHHHHHHHHHTT-EEE-----EEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS
T ss_pred HHHHHHHHHHcCCCEE-----EEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCc
Confidence 3456677777887663 344799999999999998874 46666655543
No 376
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=21.73 E-value=4e+02 Score=20.92 Aligned_cols=28 Identities=11% Similarity=0.189 Sum_probs=24.4
Q ss_pred CCEEEEcCCChHHHH-HHHHHHHhcCCCC
Q 045468 192 PQHFLPIHGELLFLK-EHELLGRSTGIRH 219 (221)
Q Consensus 192 Pk~iiPVHge~~~~~-~~~~~~~~~g~~~ 219 (221)
....+-+-|-..... +..+.+++.|+++
T Consensus 200 ~~~~~~icGp~~~~~~~~~~~l~~~G~~~ 228 (234)
T cd06183 200 EDTLVLVCGPPPMIEGAVKGLLKELGYKK 228 (234)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHcCCCH
Confidence 346788999999999 9999999999975
No 377
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=21.70 E-value=3.4e+02 Score=19.99 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHcCCeEEec---------CCceeeeecCCCHHHHHHHHHH
Q 045468 147 ESRVMKMLNRISEIGSTIVMG---------RNEGLHTSGHGYRGELEEVLKL 189 (221)
Q Consensus 147 e~~~~~~~~~l~~~g~~v~~~---------~~~~~h~SGHA~~~dL~~~i~~ 189 (221)
+.+...+++.|.+.|++|.-. +.-.+|+.||-++.+|-+=++.
T Consensus 67 ~~EV~pvi~aL~~~GI~vtAlHNH~l~e~Prl~ymH~~~~gdp~~lA~~vr~ 118 (123)
T PF07485_consen 67 EDEVNPVISALRKNGIEVTALHNHWLFEQPRLFYMHIWGVGDPAKLARKVRA 118 (123)
T ss_pred HHHHHHHHHHHHHCCceEEEEecccccCCCCEEEEEEEecCCHHHHHHHHHH
Confidence 456788999999999977521 1236999999999988765543
No 378
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=21.66 E-value=3.9e+02 Score=22.84 Aligned_cols=65 Identities=17% Similarity=0.068 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHhcCCC
Q 045468 150 VMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGIR 218 (221)
Q Consensus 150 ~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~~~~~~~~~~~~~~g~~ 218 (221)
...+.+.+.+.|++++. ......|-.+......=++..+|..|+ +.+...+...+.+-+++.|+.
T Consensus 151 ~~~~~~~~~~~G~~vv~---~~~~~~~~~D~s~~v~~l~~~~pDav~-~~~~~~~~~~~~~~~~~~G~~ 215 (359)
T TIGR03407 151 NKIIKAYLKSLGGTVVG---EDYTPLGHTDFQTIINKIKAFKPDVVF-NTLNGDSNVAFFKQLKNAGIT 215 (359)
T ss_pred HHHHHHHHHHcCCEEEe---eEEecCChHhHHHHHHHHHHhCCCEEE-EeccCCCHHHHHHHHHHcCCC
Confidence 34466888899998872 112222444444444444455899776 444445667777888888875
No 379
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=21.65 E-value=2.3e+02 Score=24.09 Aligned_cols=33 Identities=12% Similarity=0.172 Sum_probs=26.4
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHHcCCeEEEE
Q 045468 32 KGRVITTQFASNIHRLGSVKAAADLTGRKLVFV 64 (221)
Q Consensus 32 ~g~viv~~~a~ni~Rl~~i~~~a~~~gR~~vi~ 64 (221)
++..+..+-..|++-+..++++|.+.+.++++.
T Consensus 14 ~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq 46 (282)
T TIGR01858 14 GGYAVPAFNIHNLETIQAVVETAAEMRSPVILA 46 (282)
T ss_pred cCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEE
Confidence 456655555678999999999999999988885
No 380
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=21.63 E-value=2.2e+02 Score=26.35 Aligned_cols=69 Identities=9% Similarity=0.057 Sum_probs=51.6
Q ss_pred cHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCC----CEEEEcCC--ChHHHHHHHHHHHhcCCC
Q 045468 146 NESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKP----QHFLPIHG--ELLFLKEHELLGRSTGIR 218 (221)
Q Consensus 146 ~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~P----k~iiPVHg--e~~~~~~~~~~~~~~g~~ 218 (221)
+...+..+...+.+.|++.+. .-.+.|.+.+++..++++.++- ..-|=+|+ ..-...++.-.|.+.|++
T Consensus 153 t~e~~~~~a~~l~~~Gad~I~----IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad 227 (499)
T PRK12330 153 TVEGFVEQAKRLLDMGADSIC----IKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVD 227 (499)
T ss_pred CHHHHHHHHHHHHHcCCCEEE----eCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCC
Confidence 445567788889999998773 5678999999999999999953 44455555 344666666677788875
No 381
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=21.62 E-value=2.3e+02 Score=24.18 Aligned_cols=33 Identities=12% Similarity=0.146 Sum_probs=27.1
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHHcCCeEEEE
Q 045468 32 KGRVITTQFASNIHRLGSVKAAADLTGRKLVFV 64 (221)
Q Consensus 32 ~g~viv~~~a~ni~Rl~~i~~~a~~~gR~~vi~ 64 (221)
++..+..+-..|++-+..++++|.+.+.++++-
T Consensus 16 ~~yav~AfN~~n~e~~~avi~aAe~~~sPvIlq 48 (293)
T PRK07315 16 NGYAVGGFNTNNLEWTQAILRAAEAKKAPVLIQ 48 (293)
T ss_pred CCceEEEEEECCHHHHHHHHHHHHHHCCCEEEE
Confidence 456665555678999999999999999998885
No 382
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=21.56 E-value=5.9e+02 Score=22.77 Aligned_cols=80 Identities=21% Similarity=0.335 Sum_probs=51.0
Q ss_pred EEEEEecCCCCcHH-HHHHHHHHHHHcCCeEEecC---CceeeeecCCCHHHHHHHHHH--cCCCEEEEcCCChHHHHHH
Q 045468 135 VILYSAKVIPGNES-RVMKMLNRISEIGSTIVMGR---NEGLHTSGHGYRGELEEVLKL--VKPQHFLPIHGELLFLKEH 208 (221)
Q Consensus 135 ~vI~s~~~~pg~e~-~~~~~~~~l~~~g~~v~~~~---~~~~h~SGHA~~~dL~~~i~~--i~Pk~iiPVHge~~~~~~~ 208 (221)
-+|||+. .|.|+ ..-.+.+|-...|.+++... ...+.. -|.+++-....+. .||+.+.-..-..+-+.+-
T Consensus 152 GviyS~~--~GDeP~~~mEL~efa~a~G~evv~aGKGkNnpl~~--~a~Pdt~~eeA~r~~~n~~Ml~sF~DGsKtmvEM 227 (438)
T COG4091 152 GVIYSGG--AGDEPSSCMELYEFASALGFEVVSAGKGKNNPLNI--DANPDTYEEEAKRRNMNPRMLVSFQDGSKTMVEM 227 (438)
T ss_pred CeEEecc--CCCCcHHHHHHHHHHHhcCCeEEeccCCcCCCCcc--CCCCchHHHHHhhcCCChHHhhhhhcccHHHHHH
Confidence 4799995 37665 45678899999999998542 122333 3445555555444 4788777666666666666
Q ss_pred HHHHHhcCCC
Q 045468 209 ELLGRSTGIR 218 (221)
Q Consensus 209 ~~~~~~~g~~ 218 (221)
+..|..-|+.
T Consensus 228 aavANaTGl~ 237 (438)
T COG4091 228 AAVANATGLV 237 (438)
T ss_pred HHHhcccCCC
Confidence 6666655653
No 383
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=21.50 E-value=3.7e+02 Score=22.45 Aligned_cols=45 Identities=18% Similarity=0.009 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHHHHcCC
Q 045468 14 TTSESVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGR 59 (221)
Q Consensus 14 ~~sE~~v~~~i~~~~~~~~g~viv~~~a~ni~Rl~~i~~~a~~~gR 59 (221)
..|.+|-.+-++.+++.. ++|++.+.+.+..-..++.+.|++.|=
T Consensus 48 ~Lt~eEr~~l~~~~~~~~-~~vi~gvg~~~~~~ai~~a~~a~~~Ga 92 (279)
T cd00953 48 SLSFQEKLELLKAYSDIT-DKVIFQVGSLNLEESIELARAAKSFGI 92 (279)
T ss_pred cCCHHHHHHHHHHHHHHc-CCEEEEeCcCCHHHHHHHHHHHHHcCC
Confidence 456676666666665544 468899888899999999999999986
No 384
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=21.49 E-value=2.3e+02 Score=24.07 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=25.9
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHHcCCeEEEE
Q 045468 32 KGRVITTQFASNIHRLGSVKAAADLTGRKLVFV 64 (221)
Q Consensus 32 ~g~viv~~~a~ni~Rl~~i~~~a~~~gR~~vi~ 64 (221)
++..+-.+-..|++-+..++++|.+.+.++++-
T Consensus 16 ~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq 48 (284)
T PRK12737 16 EGYAVPAFNIHNLETLQVVVETAAELRSPVILA 48 (284)
T ss_pred cCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEE
Confidence 455555555578999999999999999988874
No 385
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=21.35 E-value=4.4e+02 Score=22.77 Aligned_cols=64 Identities=16% Similarity=0.123 Sum_probs=40.9
Q ss_pred cccCCCCCCCCCCCHHHHHHH---HHHHHHhcCCcEEEEeccc-------cHHHHHHHHHHHHHcCCeEEEEcccH
Q 045468 3 SDSTNVLSPGRTTSESVVKDA---LMRHVSAAKGRVITTQFAS-------NIHRLGSVKAAADLTGRKLVFVGMSL 68 (221)
Q Consensus 3 ~EsT~~~~~~~~~sE~~v~~~---i~~~~~~~~g~viv~~~a~-------ni~Rl~~i~~~a~~~gR~~vi~~~~~ 68 (221)
.||...+..+ ..+|++.... +.++ ...+..|++.=|.. |..++..+++-|++.|...++....+
T Consensus 234 ~Eslf~~~~~-~~~e~dr~~~l~~L~~~-~~~G~~Vl~IDY~~~~~~~~~n~~~~~~~~~~~~~~Gf~pYVsd~~l 307 (315)
T TIGR01370 234 VEELFYYAAN-RPTEAERQRRLLALYRL-WQQGKFVLTVDYVDDGTKTNENPARMKDAAEKARAAGLIPYVAESDL 307 (315)
T ss_pred ecceEEcCCC-CCCHHHHHHHHHHHHHH-HHCCCcEEEEEecCCcccchhhHHHHHHHHHHHHHcCCeeeecCchh
Confidence 3554432212 4466654443 4443 44455677766776 48899999999999999888876554
No 386
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=21.31 E-value=3.6e+02 Score=22.77 Aligned_cols=62 Identities=18% Similarity=0.194 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCChHHH-HHHHHHHHhcCC
Q 045468 148 SRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGELLFL-KEHELLGRSTGI 217 (221)
Q Consensus 148 ~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~~~~-~~~~~~~~~~g~ 217 (221)
.....+.....+.|..+ .+|+++....+++...++.+.|.. -.||.+-.- ....+.+.+.|+
T Consensus 173 ~~~~~~~~~A~~~g~~v------~~H~~E~~~~~~~~~a~~~~g~~~--i~H~~~l~~~~~~~~~l~~~gi 235 (325)
T cd01320 173 EKFVRAFQRAREAGLRL------TAHAGEAGGPESVRDALDLLGAER--IGHGIRAIEDPELVKRLAERNI 235 (325)
T ss_pred HHHHHHHHHHHHCCCce------EEeCCCCCCHHHHHHHHHHcCCcc--cchhhccCccHHHHHHHHHcCC
Confidence 45567778888889887 499998877888888888888875 468875421 234556666765
No 387
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=21.18 E-value=2.6e+02 Score=23.53 Aligned_cols=41 Identities=17% Similarity=0.232 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCcEEEEe---ccccHHHHHHHHHHHHHcCCeEEEE
Q 045468 23 ALMRHVSAAKGRVITTQ---FASNIHRLGSVKAAADLTGRKLVFV 64 (221)
Q Consensus 23 ~i~~~~~~~~g~viv~~---~a~ni~Rl~~i~~~a~~~gR~~vi~ 64 (221)
.+.++.+-++ -++|+. .+.+++-+....++|++.|+|+++|
T Consensus 48 E~~e~~kia~-AL~INIGTL~~~~~~~m~~A~~~An~~~~PvvLD 91 (265)
T COG2145 48 EVEEFAKIAD-ALLINIGTLSAERIQAMRAAIKAANESGKPVVLD 91 (265)
T ss_pred HHHHHHHhcc-ceEEeeccCChHHHHHHHHHHHHHHhcCCCEEec
Confidence 3444433333 466665 4445666666777789999999997
No 388
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=21.14 E-value=5.4e+02 Score=22.18 Aligned_cols=80 Identities=14% Similarity=0.122 Sum_probs=49.8
Q ss_pred EEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHh
Q 045468 135 VILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGELLFLKEHELLGRS 214 (221)
Q Consensus 135 ~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~~~~~~~~~~~~~ 214 (221)
.+|+.....+|... ...+.+.+...|.+++. .+.++.-++. ...+..=+..-+|. +|-+-+..++...+.+.+++
T Consensus 151 v~ii~~~~~yg~~~-~~~~~~~l~~~G~~~~~--~~~~~~~~~~-~~~~v~~i~~~~~d-~v~~~~~~~~~~~~~r~~~~ 225 (366)
T COG0683 151 VAIIGDDYAYGEGL-ADAFKAALKALGGEVVV--EEVYAPGDTD-FSALVAKIKAAGPD-AVLVGGYGPDAALFLRQARE 225 (366)
T ss_pred EEEEeCCCCcchhH-HHHHHHHHHhCCCeEEE--EEeeCCCCCC-hHHHHHHHHhcCCC-EEEECCCCccchHHHHHHHH
Confidence 44554444556433 35678899999997431 1123222222 33333334444788 77778888899999999999
Q ss_pred cCCCC
Q 045468 215 TGIRH 219 (221)
Q Consensus 215 ~g~~~ 219 (221)
.|+..
T Consensus 226 ~G~~~ 230 (366)
T COG0683 226 QGLKA 230 (366)
T ss_pred cCCCC
Confidence 99854
No 389
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=20.97 E-value=2.4e+02 Score=24.83 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=28.3
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHHcCCeEEEEc
Q 045468 32 KGRVITTQFASNIHRLGSVKAAADLTGRKLVFVG 65 (221)
Q Consensus 32 ~g~viv~~~a~ni~Rl~~i~~~a~~~gR~~vi~~ 65 (221)
.+..+-.+-..|++-+..++++|.+.+.++++.-
T Consensus 16 ~~yAVgAfN~~n~e~~~avi~AAee~~sPvIiq~ 49 (347)
T PRK09196 16 HGYGVPAFNVNNLEQVQAIMEAADETDSPVILQA 49 (347)
T ss_pred cCceEEEeeeCCHHHHHHHHHHHHHhCCCEEEEC
Confidence 4566666666889999999999999999988853
No 390
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated
Probab=20.95 E-value=4.1e+02 Score=22.98 Aligned_cols=60 Identities=8% Similarity=0.001 Sum_probs=41.0
Q ss_pred HHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcC---CCEEEEcCCChHHHHHHHHHHHhcCCCC
Q 045468 152 KMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVK---PQHFLPIHGELLFLKEHELLGRSTGIRH 219 (221)
Q Consensus 152 ~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~---Pk~iiPVHge~~~~~~~~~~~~~~g~~~ 219 (221)
.+...+.+.|+.+.. ..+ ..+..|...++..++ |+ .|-+++.+.+.....+-|++.|++.
T Consensus 157 ~~~~~~~~~g~~v~~-----~~~--~~~~~d~~~~L~~ik~~~~~-~iil~~~~~~~~~il~qa~~~gm~~ 219 (384)
T cd06393 157 ELIMAPSRYNIRLKI-----RQL--PTDSDDARPLLKEMKRGREF-RIIFDCSHQMAAQILKQAMAMGMMT 219 (384)
T ss_pred HHHHhhhccCceEEE-----EEC--CCCchHHHHHHHHHhhcCce-EEEEECCHHHHHHHHHHHHHhcccc
Confidence 466666777887751 111 123467777777774 44 4456888899999999999999853
No 391
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=20.95 E-value=2e+02 Score=20.19 Aligned_cols=41 Identities=12% Similarity=0.063 Sum_probs=23.0
Q ss_pred HHHHHhcCCcEEEEeccccHHHHHHHHHHHHHcCCeEEEEccc
Q 045468 25 MRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMS 67 (221)
Q Consensus 25 ~~~~~~~~g~viv~~~a~ni~Rl~~i~~~a~~~gR~~vi~~~~ 67 (221)
.+++...+--|+|-|-++ +-+.+.+..+-+.|+.+|...+.
T Consensus 52 ~~~~~~~~~dvvVE~t~~--~~~~~~~~~~L~~G~~VVt~nk~ 92 (117)
T PF03447_consen 52 EELIDDPDIDVVVECTSS--EAVAEYYEKALERGKHVVTANKG 92 (117)
T ss_dssp HHHHTHTT-SEEEE-SSC--HHHHHHHHHHHHTTCEEEES-HH
T ss_pred HHHhcCcCCCEEEECCCc--hHHHHHHHHHHHCCCeEEEECHH
Confidence 344432345777777443 44567777777778777776443
No 392
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=20.94 E-value=3.7e+02 Score=22.86 Aligned_cols=49 Identities=20% Similarity=0.406 Sum_probs=38.7
Q ss_pred CcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEc
Q 045468 145 GNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPI 198 (221)
Q Consensus 145 g~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPV 198 (221)
|.+.....=++...++|++++ +.|++=---++-+..+++..+|..+|-.
T Consensus 112 GD~~YL~~Cl~~Ykql~i~a~-----G~~~~E~eqp~~i~~Ll~~~~PDIlViT 160 (283)
T TIGR02855 112 GDPEYLRKCLKLYKKIGVPVV-----GIHCKEKEMPEKVLDLIEEVRPDILVIT 160 (283)
T ss_pred CCHHHHHHHHHHHHHhCCceE-----EEEecchhchHHHHHHHHHhCCCEEEEe
Confidence 444444456677888899998 7888888889999999999999976653
No 393
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=20.94 E-value=5e+02 Score=21.67 Aligned_cols=54 Identities=11% Similarity=-0.041 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEe-cc----------ccHHHHHHHHHHHHHcCCeEEEEcccH
Q 045468 14 TTSESVVKDALMRHVSAAKGRVITTQ-FA----------SNIHRLGSVKAAADLTGRKLVFVGMSL 68 (221)
Q Consensus 14 ~~sE~~v~~~i~~~~~~~~g~viv~~-~a----------~ni~Rl~~i~~~a~~~gR~~vi~~~~~ 68 (221)
-.||+.+.+.... +++.+-.++... |- --.+-+..+.++|+++|-+++-+....
T Consensus 25 vEs~e~~~~~a~~-~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev~d~ 89 (250)
T PRK13397 25 IESYDHIRLAASS-AKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVSEIMSE 89 (250)
T ss_pred cCCHHHHHHHHHH-HHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEEeeCCH
Confidence 3566666655555 455544444332 21 136778899999999998887765553
No 394
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=20.90 E-value=2.5e+02 Score=25.21 Aligned_cols=41 Identities=12% Similarity=-0.023 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHhcCCC
Q 045468 177 HGYRGELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGIR 218 (221)
Q Consensus 177 HA~~~dL~~~i~~i~Pk~iiPVHge~~~~~~~~~~~~~~g~~ 218 (221)
.-+.+.|.++++..+|+.+|| -.|.+-....++.+++.|++
T Consensus 54 ~~d~~~l~~~a~~~~iD~Vv~-g~E~~l~~glad~~~~~Gip 94 (426)
T PRK13789 54 ILDKSSVQSFLKSNPFDLIVV-GPEDPLVAGFADWAAELGIP 94 (426)
T ss_pred cCCHHHHHHHHHHcCCCEEEE-CCchHHHHHHHHHHHHcCCC
Confidence 357778888888888888886 45666666777777777764
No 395
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=20.87 E-value=3.4e+02 Score=23.91 Aligned_cols=68 Identities=10% Similarity=0.049 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHcCCeEEecCCceeeeecCCCH----HHHH---HHHHHcCCCEEEEcCCChHHHHHHHHHHHhcCCC
Q 045468 147 ESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYR----GELE---EVLKLVKPQHFLPIHGELLFLKEHELLGRSTGIR 218 (221)
Q Consensus 147 e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~----~dL~---~~i~~i~Pk~iiPVHge~~~~~~~~~~~~~~g~~ 218 (221)
+.....+...+.+.|+.+... +.+ ..+..+. .+.. ++++..+|+.+| +.+..++.....+.|+++|+.
T Consensus 186 ~~~~~~f~~~~~~~GicIa~~--e~~-~~~~~~~~~~~~~~~~~~~~ik~~~a~vVv-v~~~~~~~~~l~~~a~~~g~~ 260 (403)
T cd06361 186 RSALETFIIQAEANGVCIAFK--EIL-PASLSDNTKLNRIIRTTEKIIEENKVNVIV-VFARQFHVFLLFNKAIERNIN 260 (403)
T ss_pred HHHHHHHHHHHHHCCeEEEEE--EEe-cCccCcchhHHHHHHHHHHHHhcCCCeEEE-EEeChHHHHHHHHHHHHhCCC
Confidence 334556778888899877621 112 2222111 3333 334445777655 689999999999999998873
No 396
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=20.72 E-value=3.6e+02 Score=22.37 Aligned_cols=60 Identities=17% Similarity=0.192 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHc---CCCEEEEcCCChHHHHHHHHHHHhcCCC
Q 045468 151 MKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLV---KPQHFLPIHGELLFLKEHELLGRSTGIR 218 (221)
Q Consensus 151 ~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i---~Pk~iiPVHge~~~~~~~~~~~~~~g~~ 218 (221)
..+...+.+.|.++.. .....+- +|....+..+ +|+.|| +++...+.....+.|++.|++
T Consensus 144 ~~~~~~~~~~g~~v~~----~~~~~~~---~d~~~~l~~i~~~~~d~Vi-~~~~~~~~~~i~~qa~~~g~~ 206 (324)
T cd06368 144 QELLDALSPKGIQVTV----RRLDDDT---DMYRPLLKEIKREKERRII-LDCSPERLKEFLEQAVEVGMM 206 (324)
T ss_pred HHHHHhhccCCceEEE----EEecCCc---hHHHHHHHHHhhccCceEE-EECCHHHHHHHHHHHHHhccc
Confidence 4455666667777652 1111221 2555555444 566554 677778888899999999874
No 397
>PRK11524 putative methyltransferase; Provisional
Probab=20.72 E-value=3.3e+02 Score=22.81 Aligned_cols=54 Identities=19% Similarity=0.328 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHHHHcCCeEEEEcccHHHHHHHHHH
Q 045468 18 SVVKDALMRHVSAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWK 77 (221)
Q Consensus 18 ~~v~~~i~~~~~~~~g~viv~~~a~ni~Rl~~i~~~a~~~gR~~vi~~~~~~~~~~~~~~ 77 (221)
.+|.+.+.+...+ .|-+++.+|+- --+-+-||.++||..+-..... .|.+.+.+
T Consensus 195 ~~L~erlI~~~S~-~GD~VLDPF~G----SGTT~~AA~~lgR~~IG~Ei~~-~Y~~~a~~ 248 (284)
T PRK11524 195 EALLKRIILASSN-PGDIVLDPFAG----SFTTGAVAKASGRKFIGIEINS-EYIKMGLR 248 (284)
T ss_pred HHHHHHHHHHhCC-CCCEEEECCCC----CcHHHHHHHHcCCCEEEEeCCH-HHHHHHHH
Confidence 4677777776544 56555555551 1456888999999888765554 56666543
No 398
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=20.69 E-value=2e+02 Score=20.73 Aligned_cols=29 Identities=10% Similarity=0.103 Sum_probs=23.9
Q ss_pred eccccHHHHHHHHHHHHHcCCeEEEEccc
Q 045468 39 QFASNIHRLGSVKAAADLTGRKLVFVGMS 67 (221)
Q Consensus 39 ~~a~ni~Rl~~i~~~a~~~gR~~vi~~~~ 67 (221)
+++++.+=++.+++.|++.+.++.+.|..
T Consensus 5 v~P~s~~ev~~~v~~a~~~~~~v~~~g~G 33 (139)
T PF01565_consen 5 VRPKSVEEVQAIVKFANENGVPVRVRGGG 33 (139)
T ss_dssp EEESSHHHHHHHHHHHHHTTSEEEEESSS
T ss_pred EEeCCHHHHHHHHHHHHHcCCcEEEEcCC
Confidence 45667888899999999999999998643
No 399
>PRK03321 putative aminotransferase; Provisional
Probab=20.64 E-value=2.4e+02 Score=23.99 Aligned_cols=58 Identities=9% Similarity=0.024 Sum_probs=30.7
Q ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcC
Q 045468 131 TNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIH 199 (221)
Q Consensus 131 ~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVH 199 (221)
++||.|++. +|.+... .......|++++..+.+ -.+..+.+++.+.++. +++.++..|
T Consensus 96 ~~gd~Vli~---~p~y~~~----~~~~~~~g~~~~~v~~~---~~~~~~~~~l~~~~~~-~~~~v~l~~ 153 (352)
T PRK03321 96 GPGDEVIFA---WRSFEAY----PILVQVAGATPVQVPLT---PDHTHDLDAMAAAITD-RTRLIFVCN 153 (352)
T ss_pred CCCCEEEeC---CCCHHHH----HHHHHHcCCEEEEccCC---CCCCCCHHHHHHhhcc-CCCEEEEeC
Confidence 478887764 3444321 12244567776632211 1255667777666643 667666554
No 400
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=20.63 E-value=4.3e+02 Score=20.84 Aligned_cols=13 Identities=8% Similarity=0.210 Sum_probs=6.1
Q ss_pred HHHHHHHHHcCCe
Q 045468 151 MKMLNRISEIGST 163 (221)
Q Consensus 151 ~~~~~~l~~~g~~ 163 (221)
....+.+...++.
T Consensus 45 ~~~~~~~~~~~~d 57 (268)
T cd06323 45 LNDIEDLITRGVD 57 (268)
T ss_pred HHHHHHHHHcCCC
Confidence 3444445444554
No 401
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.60 E-value=4.2e+02 Score=21.29 Aligned_cols=63 Identities=19% Similarity=0.173 Sum_probs=47.1
Q ss_pred cHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCC------hHHHHHHHHHHHhcCCCC
Q 045468 146 NESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGE------LLFLKEHELLGRSTGIRH 219 (221)
Q Consensus 146 ~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge------~~~~~~~~~~~~~~g~~~ 219 (221)
|+.+.........++|++++. |+.+|+++|.+.++=--.-|=-|. .-.+...|+.|.|.|++.
T Consensus 45 Y~~R~~e~~~f~~~~~i~~ie-----------gdY~~~~~w~~~vKg~E~EpE~G~RC~~Cfd~Rle~tA~~A~e~G~d~ 113 (204)
T COG1636 45 YELRKEEVKRFAEKFGINFIE-----------GDYEDLEKWFERVKGMEDEPEGGKRCTMCFDMRLEKTAKKAKELGFDV 113 (204)
T ss_pred HHHHHHHHHHHHHHcCCeeee-----------cCcccHHHHHHHhhcchhCCCCCchhHhHHHHHHHHHHHHHHHcCCch
Confidence 566667777888899998872 345588999999876555665564 346778889999999875
No 402
>PRK13604 luxD acyl transferase; Provisional
Probab=20.57 E-value=4.5e+02 Score=22.61 Aligned_cols=65 Identities=14% Similarity=0.175 Sum_probs=37.3
Q ss_pred CCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecC--------------CCHHHHHHHHHHcC---CCE
Q 045468 132 NEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGH--------------GYRGELEEVLKLVK---PQH 194 (221)
Q Consensus 132 ~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGH--------------A~~~dL~~~i~~i~---Pk~ 194 (221)
+..++|++..- -+......++-++|.+.|+.++ ++.+-|| -..+|+...++.++ +..
T Consensus 36 ~~~~vIi~HGf-~~~~~~~~~~A~~La~~G~~vL-----rfD~rg~~GeS~G~~~~~t~s~g~~Dl~aaid~lk~~~~~~ 109 (307)
T PRK13604 36 KNNTILIASGF-ARRMDHFAGLAEYLSSNGFHVI-----RYDSLHHVGLSSGTIDEFTMSIGKNSLLTVVDWLNTRGINN 109 (307)
T ss_pred CCCEEEEeCCC-CCChHHHHHHHHHHHHCCCEEE-----EecCCCCCCCCCCccccCcccccHHHHHHHHHHHHhcCCCc
Confidence 34556554421 1233347788899999999887 3333333 23568866676664 222
Q ss_pred EEEcCCChH
Q 045468 195 FLPIHGELL 203 (221)
Q Consensus 195 iiPVHge~~ 203 (221)
|-++|...
T Consensus 110 -I~LiG~Sm 117 (307)
T PRK13604 110 -LGLIAASL 117 (307)
T ss_pred -eEEEEECH
Confidence 44666543
No 403
>PLN02721 threonine aldolase
Probab=20.57 E-value=2.7e+02 Score=23.42 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=20.4
Q ss_pred cHHHHHHHHHHHHHcCCeEEEEcc
Q 045468 43 NIHRLGSVKAAADLTGRKLVFVGM 66 (221)
Q Consensus 43 ni~Rl~~i~~~a~~~gR~~vi~~~ 66 (221)
+.+++..|.++|++.|-.+++|+.
T Consensus 156 ~~~~l~~l~~l~~~~g~~livD~a 179 (353)
T PLN02721 156 SVEYTDKVGELAKRHGLKLHIDGA 179 (353)
T ss_pred cHHHHHHHHHHHHHcCCEEEEEch
Confidence 466789999999999998888874
No 404
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=20.52 E-value=3e+02 Score=21.95 Aligned_cols=35 Identities=20% Similarity=0.091 Sum_probs=17.1
Q ss_pred HHhcCC-cEEEEe-ccccHHHHHHHHHHHHHcCCeEEEEc
Q 045468 28 VSAAKG-RVITTQ-FASNIHRLGSVKAAADLTGRKLVFVG 65 (221)
Q Consensus 28 ~~~~~g-~viv~~-~a~ni~Rl~~i~~~a~~~gR~~vi~~ 65 (221)
+.+++. .++++. ...++++ +++.+++++|.++..|
T Consensus 24 ~~~~Gv~~~v~~~~~~~~~~~---~~~~~~~~~~i~~~~G 60 (252)
T TIGR00010 24 AKAAGVTAVVAVGTDLEDFLR---ALELAEKYPNVYAAVG 60 (252)
T ss_pred HHHcCCCEEEEecCCHHHHHH---HHHHHHHCCCEEEEEE
Confidence 344443 444332 3345555 4556777885333444
No 405
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.47 E-value=4.6e+02 Score=22.41 Aligned_cols=37 Identities=14% Similarity=0.101 Sum_probs=24.0
Q ss_pred HHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcC
Q 045468 150 VMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVK 191 (221)
Q Consensus 150 ~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~ 191 (221)
...-....++.|+++. .++.+...+.+||...|+.+|
T Consensus 50 v~~k~k~a~~~Gi~~~-----~~~l~~~~~~~el~~~i~~lN 86 (296)
T PRK14188 50 VRSKGKQTKEAGMASF-----EHKLPADTSQAELLALIARLN 86 (296)
T ss_pred HHHHHHHHHHcCCEEE-----EEECCCCCCHHHHHHHHHHHh
Confidence 3334556666777664 566777777777777777774
No 406
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.44 E-value=2.4e+02 Score=24.62 Aligned_cols=16 Identities=0% Similarity=-0.157 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhcCCC
Q 045468 203 LFLKEHELLGRSTGIR 218 (221)
Q Consensus 203 ~~~~~~~~~~~~~g~~ 218 (221)
..+.++.+.+++.|++
T Consensus 301 e~i~~f~~~L~~~gi~ 316 (349)
T PRK14463 301 EAIDRFHKYLLDKHVT 316 (349)
T ss_pred HHHHHHHHHHHHCCce
Confidence 3455666667777764
No 407
>PRK06107 aspartate aminotransferase; Provisional
Probab=20.37 E-value=5.8e+02 Score=22.24 Aligned_cols=96 Identities=15% Similarity=0.063 Sum_probs=47.2
Q ss_pred EEEecCCCccHHHHHHHHhcCCCCCcccCCCCEEEEEecCCCCcHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHH
Q 045468 103 LIVTTGSQAEPRAALNLASYGGSHSLKLTNEDVILYSAKVIPGNESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGE 182 (221)
Q Consensus 103 vi~~~g~~~e~~~~l~~~~~~~~~~~~~~~~~~vI~s~~~~pg~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~d 182 (221)
+++++|.+.-....+..+ +++||.+++..+..++|... +...+..++...... ......+.++
T Consensus 96 i~~t~G~~~al~~~~~~~---------~~~gd~vl~~~p~y~~y~~~-------~~~~~~~~~~v~~~~-~~~~~~~~~~ 158 (402)
T PRK06107 96 ITVGGGAKQAIFLALMAT---------LEAGDEVIIPAPYWVSYPDM-------VLANDGTPVIVACPE-EQGFKLTPEA 158 (402)
T ss_pred EEEeCCHHHHHHHHHHHh---------cCCCCEEEEecCCCcCHHHH-------HHHcCCEEEEecCCc-ccCCCCCHHH
Confidence 667777643332222211 24789998888755566432 222344443111000 0011245566
Q ss_pred HHHHHHHcCCCEEE---EcC--C---ChHHHHHHHHHHHhc-C
Q 045468 183 LEEVLKLVKPQHFL---PIH--G---ELLFLKEHELLGRST-G 216 (221)
Q Consensus 183 L~~~i~~i~Pk~ii---PVH--g---e~~~~~~~~~~~~~~-g 216 (221)
|.+.+.. +++.++ |-+ | ...++.+.+++|++. |
T Consensus 159 l~~~~~~-~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~ 200 (402)
T PRK06107 159 LEAAITP-RTRWLILNAPSNPTGAVYSRAELRALADVLLRHPH 200 (402)
T ss_pred HHhhcCc-CceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCC
Confidence 6655431 455566 321 1 233677778888876 6
No 408
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=20.36 E-value=5.7e+02 Score=22.17 Aligned_cols=63 Identities=6% Similarity=-0.042 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHH--------HcCCC-EEEEcCCChHHHHHHHHHHHhcCCC
Q 045468 150 VMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLK--------LVKPQ-HFLPIHGELLFLKEHELLGRSTGIR 218 (221)
Q Consensus 150 ~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~--------~i~Pk-~iiPVHge~~~~~~~~~~~~~~g~~ 218 (221)
...+...+.+.|+.+.. .. ........+..+.+ .++|+ ..|-+|+..+.+.++.+.|++.|..
T Consensus 154 l~~~~~~~~~~g~~v~~----~~--~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~vIl~~~~~~~~~~l~~a~~~gm~ 225 (363)
T cd06381 154 LQEFLDQLSRQGIDVLL----QK--VDLNISKMATALFTTMRCEELNRYRDTLRRALLLLSPNGAYTFIDASVETNLA 225 (363)
T ss_pred HHHHHHHHHhcCceEEE----Ee--cccccchhhhhhhhHHHHHHHHhhcccceEEEEEcCcHHHHHHHHHHHHcCCC
Confidence 35566778888876541 11 11111112222222 23665 4556899999999999999999985
No 409
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=20.32 E-value=2.6e+02 Score=22.82 Aligned_cols=36 Identities=11% Similarity=0.072 Sum_probs=18.8
Q ss_pred HHHHHHHHHcCCCE-EEE-cCCChHHHHHHHHHHHhcCCC
Q 045468 181 GELEEVLKLVKPQH-FLP-IHGELLFLKEHELLGRSTGIR 218 (221)
Q Consensus 181 ~dL~~~i~~i~Pk~-iiP-VHge~~~~~~~~~~~~~~g~~ 218 (221)
+...+.+....... ++| .|- .+.....+.++++|+.
T Consensus 94 ~~fi~~~~~aG~~giiipDl~~--ee~~~~~~~~~~~g~~ 131 (242)
T cd04724 94 ERFLRDAKEAGVDGLIIPDLPP--EEAEEFREAAKEYGLD 131 (242)
T ss_pred HHHHHHHHHCCCcEEEECCCCH--HHHHHHHHHHHHcCCc
Confidence 55555555555653 331 122 2555666777777753
No 410
>PRK02399 hypothetical protein; Provisional
Probab=20.24 E-value=3.9e+02 Score=24.07 Aligned_cols=49 Identities=16% Similarity=0.291 Sum_probs=37.1
Q ss_pred CCCEEEEEecCCCC-cHHHHHHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHH
Q 045468 132 NEDVILYSAKVIPG-NESRVMKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKL 189 (221)
Q Consensus 132 ~~~~vI~s~~~~pg-~e~~~~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~ 189 (221)
.+.+|-.++. | +.+-...+...|++.|.+++ -+|+.|... .-+.+|++.
T Consensus 185 ~kp~Ig~Tmf---GvTtp~v~~~~~~Le~~GyEvl-----VFHATG~GG-raME~Li~~ 234 (406)
T PRK02399 185 DKPLIGLTMF---GVTTPCVQAAREELEARGYEVL-----VFHATGTGG-RAMEKLIDS 234 (406)
T ss_pred CCceEEEecC---CCcHHHHHHHHHHHHhCCCeEE-----EEcCCCCch-HHHHHHHHc
Confidence 4556677765 6 56778889999999999998 799999954 456666654
No 411
>PRK08175 aminotransferase; Validated
Probab=20.21 E-value=3.6e+02 Score=23.46 Aligned_cols=25 Identities=16% Similarity=-0.063 Sum_probs=21.3
Q ss_pred cHHHHHHHHHHHHHcCCeEEEEccc
Q 045468 43 NIHRLGSVKAAADLTGRKLVFVGMS 67 (221)
Q Consensus 43 ni~Rl~~i~~~a~~~gR~~vi~~~~ 67 (221)
+.+++.+|+++|++.|-.+++|...
T Consensus 182 ~~~~~~~i~~~a~~~~i~ii~De~y 206 (395)
T PRK08175 182 ELEFFEKVVALAKRYDVLVVHDLAY 206 (395)
T ss_pred CHHHHHHHHHHHHHcCcEEEEecch
Confidence 5899999999999999888887644
No 412
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=20.19 E-value=2.9e+02 Score=22.06 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=37.4
Q ss_pred HHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHc-CCCEEEEcCCChHHHHH
Q 045468 154 LNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLV-KPQHFLPIHGELLFLKE 207 (221)
Q Consensus 154 ~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i-~Pk~iiPVHge~~~~~~ 207 (221)
.+++.+.|+.-+ =.|-.-+.++|+.|.+.. .++.=++|||--+.+..
T Consensus 53 ~~~~~~~G~~~i-------~ls~EL~~~ei~~i~~~~~~~~~Ev~v~G~~~~m~s 100 (233)
T PF01136_consen 53 ARFLKELGASRI-------TLSPELSLEEIKEIAENSPGVPLEVIVHGNLPMMVS 100 (233)
T ss_pred HHHHHHcCCCEE-------EECccCCHHHHHHHHHhCCCCeEEEEEeCCcccccC
Confidence 366777788544 357788999999999999 89999999998665543
No 413
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=20.12 E-value=2.3e+02 Score=25.28 Aligned_cols=66 Identities=11% Similarity=0.105 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEe---cc-ccHHHHHHHHHHHHHcCCeEEEEcccH------HHHHHHHHHCCCCC
Q 045468 16 SESVVKDALMRHVSAAKGRVITTQ---FA-SNIHRLGSVKAAADLTGRKLVFVGMSL------RTYLDAAWKDGKAP 82 (221)
Q Consensus 16 sE~~v~~~i~~~~~~~~g~viv~~---~a-~ni~Rl~~i~~~a~~~gR~~vi~~~~~------~~~~~~~~~~g~~~ 82 (221)
.+..+++.+.+. .....+.+++. |+ +.=|++.+|.++|+++|-+.++.+.+- ...++.+.+.|.++
T Consensus 140 d~~~ie~~i~~~-G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~~GRvd 215 (389)
T PF05889_consen 140 DLEAIEAKIEEL-GADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWRVGRVD 215 (389)
T ss_dssp HHHHHHHHHHHH-CGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHHHSTCS
T ss_pred cHHHHHHHHHHh-CCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHhcCCcc
Confidence 455666666443 22234555554 44 555689999999999999999975442 12334455556554
No 414
>PF11079 YqhG: Bacterial protein YqhG of unknown function; InterPro: IPR024562 This family of putative proteins appears to be restricted to Firmicutes. Their function is not known.
Probab=20.11 E-value=1.2e+02 Score=25.54 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHcCCeEEEE
Q 045468 46 RLGSVKAAADLTGRKLVFV 64 (221)
Q Consensus 46 Rl~~i~~~a~~~gR~~vi~ 64 (221)
||+.|+++|++.||-+.++
T Consensus 87 RL~QIF~sa~~~GrfvrLy 105 (260)
T PF11079_consen 87 RLHQIFQSAKKLGRFVRLY 105 (260)
T ss_pred hHHHHHHHHHhcCCEEEEE
Confidence 9999999999999977776
No 415
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=20.06 E-value=2.6e+02 Score=23.67 Aligned_cols=33 Identities=9% Similarity=0.059 Sum_probs=27.1
Q ss_pred CCcEEEEeccccHHHHHHHHHHHHHcCCeEEEE
Q 045468 32 KGRVITTQFASNIHRLGSVKAAADLTGRKLVFV 64 (221)
Q Consensus 32 ~g~viv~~~a~ni~Rl~~i~~~a~~~gR~~vi~ 64 (221)
++..+-.+-.-|++-+..++++|.+.+.++++.
T Consensus 16 ~~yaV~Afn~~n~e~~~avi~aAe~~~~Pvii~ 48 (281)
T PRK06806 16 ENYGVGAFSVANMEMVMGAIKAAEELNSPIILQ 48 (281)
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEE
Confidence 456666665678999999999999999988885
No 416
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=20.06 E-value=3.3e+02 Score=24.38 Aligned_cols=45 Identities=13% Similarity=0.031 Sum_probs=33.4
Q ss_pred HHHHHHHHhcC-CcEEEEeccccHHHHHHHHHHHHHcCCeEEEEcc
Q 045468 22 DALMRHVSAAK-GRVITTQFASNIHRLGSVKAAADLTGRKLVFVGM 66 (221)
Q Consensus 22 ~~i~~~~~~~~-g~viv~~~a~ni~Rl~~i~~~a~~~gR~~vi~~~ 66 (221)
+.+.+++++.+ ..|+++....+-+++.++++.|.+.|..+.+...
T Consensus 181 ~dl~~~i~~~~vd~ViIA~p~~~~~~~~~ll~~~~~~gv~V~vvP~ 226 (451)
T TIGR03023 181 DDLEELIREGEVDEVYIALPLAAEDRILELLDALEDLTVDVRLVPD 226 (451)
T ss_pred HHHHHHHHhcCCCEEEEeeCcccHHHHHHHHHHHHhcCCEEEEeCc
Confidence 34555554432 5888888887888999999999999988777653
No 417
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=20.03 E-value=1.9e+02 Score=24.04 Aligned_cols=55 Identities=18% Similarity=0.136 Sum_probs=41.3
Q ss_pred HHHHHHHHHcCCeEEecCCceeeeecCCCHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHhcCC
Q 045468 151 MKMLNRISEIGSTIVMGRNEGLHTSGHGYRGELEEVLKLVKPQHFLPIHGELLFLKEHELLGRSTGI 217 (221)
Q Consensus 151 ~~~~~~l~~~g~~v~~~~~~~~h~SGHA~~~dL~~~i~~i~Pk~iiPVHge~~~~~~~~~~~~~~g~ 217 (221)
..+.+++...++ + =+|++...+-+.+..=.|-.+||.-| ..++..+++.+++.|+
T Consensus 242 ~~~~~~m~~ad~--v---------Is~~G~~t~~Ea~~~g~P~l~ip~~~-~~EQ~~~a~~l~~~G~ 296 (318)
T PF13528_consen 242 PDFAELMAAADL--V---------ISKGGYTTISEALALGKPALVIPRPG-QDEQEYNARKLEELGL 296 (318)
T ss_pred HHHHHHHHhCCE--E---------EECCCHHHHHHHHHcCCCEEEEeCCC-CchHHHHHHHHHHCCC
Confidence 456677766553 2 35666677778888889999999987 4578888888888885
Done!