Query 045469
Match_columns 938
No_of_seqs 180 out of 212
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 13:34:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045469.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045469hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04121 Nup84_Nup100: Nuclear 100.0 3E-106 7E-111 969.2 35.0 540 44-674 5-570 (697)
2 KOG1964 Nuclear pore complex, 100.0 1.6E-95 4E-100 831.9 46.9 621 18-744 58-732 (800)
3 PF04097 Nic96: Nup93/Nic96; 96.8 0.027 5.8E-07 68.9 16.3 187 173-442 111-304 (613)
4 PF07575 Nucleopor_Nup85: Nup8 96.5 0.14 3E-06 62.1 19.5 255 174-517 149-417 (566)
5 PF12110 Nup96: Nuclear protei 94.9 0.75 1.6E-05 51.3 15.8 223 177-487 3-239 (290)
6 KOG2168 Cullins [Cell cycle co 93.3 0.087 1.9E-06 65.2 4.8 102 174-299 326-431 (835)
7 PF12931 Sec16_C: Sec23-bindin 53.8 24 0.00052 39.4 5.8 73 180-283 2-79 (284)
8 COG1901 Uncharacterized conser 29.6 83 0.0018 33.5 4.8 75 753-835 32-109 (197)
9 smart00668 CTLH C-terminal to 26.9 76 0.0016 26.0 3.4 24 177-200 5-28 (58)
10 PF10607 CLTH: CTLH/CRA C-term 23.4 80 0.0017 31.0 3.3 23 177-199 5-27 (145)
11 PF10414 CysG_dimeriser: Siroh 23.3 97 0.0021 26.4 3.4 28 171-198 25-57 (60)
No 1
>PF04121 Nup84_Nup100: Nuclear pore protein 84 / 107 ; InterPro: IPR007252 Nup84p forms a complex with five proteins, including Nup120p, Nup85p, Sec13p, and a Sec13p homolog. This Nup84p complex in conjunction with Sec13-type proteins is required for correct nuclear pore biogenesis [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 3CQC_A 3CQG_A 3I4R_A 3IKO_I 3JRO_C.
Probab=100.00 E-value=3.4e-106 Score=969.20 Aligned_cols=540 Identities=29% Similarity=0.461 Sum_probs=348.1
Q ss_pred cchhhhhHHHHHHHHHHhhccCCCCCCccccCCCCCcHHHH-HHHhhcchhHHHHHHHHHHHHHhhccCcchhhhhcCCC
Q 045469 44 LTDSGETTFALFASLLDSALQGTEEPPVELILSPSTSHIEA-CQFVVNDHTAQLCLRIVQWLEGLASKSLDLESKVRGSH 122 (938)
Q Consensus 44 ~~e~Ea~TW~Ll~~L~~~R~~~~~e~~~~~~~~~ysS~~~~-~~fL~~D~~~rE~~iVl~WLE~~A~~~~d~e~~vrg~~ 122 (938)
.||+|++||+||.+||++|++..++........+|+|++++ ++|+.+|+.++|+++|++|||+||+.. +..+
T Consensus 5 ~~~lE~~tW~Ll~~L~~~R~~~~~~~~~~~~~~~~~S~~~~~~~~~~~d~~~~e~~~v~~WLe~~a~~~-~~~~------ 77 (697)
T PF04121_consen 5 NWELEANTWDLLERLYSDRYSEEEEDQEEEQIEPYSSEREIWEQLLESDPELRELQIVLDWLESNAAEE-ERPD------ 77 (697)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCS-TTT---SS--TTS-HHHHHHHHHHH-HHHHHHHHHHHHHHHT--------S------
T ss_pred HHHHHHHHHHHHHHHHHhcccCcccchhhhccCCCCCHHHHHHHHHHhCHHHHHHHHHHHHHHhhCcCC-CCCc------
Confidence 69999999999999999999876555443223399999999 999999999999999999999999874 2221
Q ss_pred ccccCCCCCCchhhHHHHHcCC-----CCCCCccccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Q 045469 123 VGTYLPNSGVWHHTQRYLKKGV-----ADANTVHHLDFDAPTREHAHQLPDDKKQDESLLEDVWTLLRAGRQEEACDLCR 197 (938)
Q Consensus 123 ~g~~~~~~~~W~nT~~aLK~~~-----~~~~lVtqLDPDAP~Rq~~~L~~~D~~~E~~l~k~if~LLRaGrleeA~elC~ 197 (938)
...+..++++|.||+++||+++ .+.++||+||||||+||+++|||+|+++|+++|++||+|||+|++++|++||+
T Consensus 78 ~~~~~~~~~~W~~T~~~ik~~~~~~~~~~~~lV~~LDpDAp~R~~~~L~~~D~~~e~~~~~~i~~llR~G~~~eA~~lc~ 157 (697)
T PF04121_consen 78 NEPYEDRTHGWENTLHAIKQKRLRALPSPNPLVTQLDPDAPLRQGRRLHPKDEEDERALLKYIFELLRAGRIEEAQELCR 157 (697)
T ss_dssp S------SSTTHHHHHT-------------SSHSHHSTTHHHHSGGGS-HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccccccccCcchhhhHHhhccchhccccccCcCcccCCCCCcccCCCCChhhHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2344467899999999999642 23589999999999999999999999999999999999999999999999999
Q ss_pred HcCCcchhhhcCcCCccCCC--CchHHHhhccCcchhhhhhhcccCCchhH-HHHHHHHhhhHHHhhhcCChHHHHHHHH
Q 045469 198 SAGQPWRAATLCPFGVIDFS--PSVEALIKNGRSRTLQAIELESGIGHQWR-LWKWASYCTSEKIFEQRGSKFEAAIYAA 274 (938)
Q Consensus 198 ~~Gq~WRAASL~g~GG~~~~--P~~d~~~~n~~~~~l~~~e~e~~~Gn~r~-LWK~~~~C~s~kla~~~~~~YERAIYga 274 (938)
++||+||||||+ |+++| |++++... .+.+...||+++ |||++||++|+ ++++++|||||||+
T Consensus 158 ~~gq~wrAasL~---G~~~~~dp~~~~~~~---------~~~~~~~G~~~r~LWk~~c~~ls~---~~~~~~yEraiY~~ 222 (697)
T PF04121_consen 158 ERGQPWRAASLC---GWQLYHDPNLDPELS---------DEDERMEGNRSRALWKRACYKLSQ---NPNLDPYERAIYGA 222 (697)
T ss_dssp HTT-HHHHHHHH---TTSB-B-TTTSGGGT---------TT-SS-BSBTTHHHHHHHHHHHHH---TSSS-HHHHHHHHH
T ss_pred HCCCHHHHHHHc---CccccCCcccccccc---------cccccccCChhHHHHHHHHHHHHh---CCCCCHHHHHHHHH
Confidence 999999999999 57776 66542111 112344799965 99987775543 78999999999999
Q ss_pred HcCCCccccccc-CCHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccccCcccCCCCCCCCCCCCCCCCCCCCchhccc
Q 045469 275 QCSNLKHVLPIC-TNWETACWAMAKSWLGVQLDLELARSQPGRMEQVKSFGDEIEGSPGQMNGISQPSVGPESWPVQVLN 353 (938)
Q Consensus 275 LsGdl~~vL~vC-~SWED~LWAy~nall~~rvd~~L~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~p~~~w~~~~l~ 353 (938)
||||+++++|+| .||||+||||+|++++++||+||.+.++..... . .+.|..+|+
T Consensus 223 L~G~~~~~l~~~~~sWeD~lwa~~n~~l~~~~d~~l~~~~~~~~~~------------------~-~~lP~~~~~----- 278 (697)
T PF04121_consen 223 LSGDLSSVLPVCSSSWEDYLWAYLNALLESRVDQELRSHCPKSSEE------------------L-LPLPSPQWN----- 278 (697)
T ss_dssp HHTS---HHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTSS-GGG--------------------S-------------
T ss_pred HhcccHhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCchh------------------h-ccCCchhhh-----
Confidence 999999999999 999999999999999999999999887543210 0 234444553
Q ss_pred CChhhHHHHHHHHhcCcCcchhhhhhhhhHHHHHHHHHHhCChhHHHHHHHHhhcCCCC---CcCCCCCCCCCChHHHHH
Q 045469 354 QQPRDLSALLQKLHSGEMVHEVVTQVCKEQQRQIEMKLMLGNIPHVLQLIWSWIAPSED---DQNVFRPHGDPQMIRFGA 430 (938)
Q Consensus 354 ~~p~sl~~iL~~L~s~~~~~~~v~~Ea~~P~rvIQ~~IIl~~i~~Ll~~~~~~l~~~~~---~~~~l~~~~~p~lLRfla 430 (938)
++.++++||+.|+++ .+++++.|+++|||+||++||+|+++.|++++..|+.+... +++. ...+||+|||+|
T Consensus 279 -~~~~~~~il~~L~~~--~~~~~~~ea~~p~r~iq~~ii~~~i~~ll~~~~~~L~~~~~~~~~~~~--~~~~~~~LRf~a 353 (697)
T PF04121_consen 279 -QERSLESILNELSSS--SNERVREEARNPYRVIQAAIILNDIDSLLESFAEWLSDAAKGSEDSND--LLEDPHLLRFLA 353 (697)
T ss_dssp -----HHHHHHHH------HHHSHHHHHSTTHHHHHHHHCS-HHHHHHHHHHCTHH-------------TTSHHHHHHHH
T ss_pred -hcccHHHHHHHHHhc--cchhHHHHhhChHHHHHHHHHHccHHHHHHHHHHHHHhhccccccccc--ccccHhHHHHHH
Confidence 356899999999654 47899999999999999999999999999999999965421 1122 246899999999
Q ss_pred HHHHHHHHhcCCCCCCcccccccchHHHHHHHHHHHHHhCCCcchHhhhhccCCchhhHHHHHHHhhhhcCchhhHHHHH
Q 045469 431 HLVLVLRYLLTDELKDPFRKDLMDAGDLIIHMYAMFLFSEHHEELVGVYASQLARHRCIDLFVHMMELRLNSSVHVKYKI 510 (938)
Q Consensus 431 HLvLfLr~l~~~~~~~~~~e~~~~~~~~II~aYI~~L~~~g~~eLIplYaS~Lp~~~~ie~ys~~Ls~i~d~s~~~k~~~ 510 (938)
||+||++.+|+....+ ....++||++||++|+.+|+++|||+|||+||+++++++||+||.+++|+++|.++
T Consensus 354 Hl~L~lr~l~~~~~~~------~~~~~~II~~Yi~~L~~~~~~~LIplY~S~L~~~~~~e~ys~~L~~i~d~~~R~~~-- 425 (697)
T PF04121_consen 354 HLILFLRSLGPSDQED------DSDKENIITAYISYLRSAGLYELIPLYASFLPEERAIEVYSRFLISITDPEEREKQ-- 425 (697)
T ss_dssp HHHHHHHHHST-TSS-------HHHHHHHHHHHHHHHHHTT-GGGHHHHHTTGGGGGG----------------------
T ss_pred HHHHHHHHhcCcCccc------hhHHHHHHHHHHHHHHHCCCcccHHHHHccCCHHHHHHHHHHHHHhcCChHHHHHH--
Confidence 9999999999743222 12446699999999999999999999999999999999999999999999998765
Q ss_pred HHHHhhhCCCCCCCCccchHHHHHHHHHhhhhhhccCCcCCCc-------chhhhhchhhhhhhhhhccccccCCCccch
Q 045469 511 FLSAMEYLPFSSGDDLKGSFEEIIERVLSRSREIKLGKYDKST-------DVAEQHRLQSLQKAMVIQWLCFTPPSTIAD 583 (938)
Q Consensus 511 fle~~~~l~~~~~~~~~~~l~~I~kr~ve~~r~~~~~~~d~~~-------dVse~~r~~D~~li~aieWL~f~p~~~~~~ 583 (938)
|+.++. .+..+.+|+|+||++++.++...|.+.. .|++ .|.++|+||+|| |+|.
T Consensus 426 -L~la~~--------~gld~~~i~k~~v~~v~~~~~~~~~~~~~~~~~~~~vs~----~D~~lI~sleWL-~~~~----- 486 (697)
T PF04121_consen 426 -LELAKK--------LGLDVSAILKRTVERVFEDTESKYPPENDISVDDDEVSE----EDERLIRSLEWL-FDPE----- 486 (697)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHH-HSGG-----
T ss_pred -HHHHHH--------cCCCHHHHHHHHHHHHHhccccccccCccccccCCCCCH----HHHHHHHHHHHH-cCcc-----
Confidence 466766 4555899999999999988888776542 3444 599999999999 8885
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhcCcCCCCccchhHHhhhhhhh--hhh--ccCCCCCCC--cchHhhHHHHHhHH
Q 045469 584 VKDVSAKLLLRALIHSNILFREFALISMWRVPAMPIGAHELLSFLAEP--LKQ--LSENPDTLE--DNVSENLKEFQDWS 657 (938)
Q Consensus 584 ~~~~~~kl~~dAL~~sN~LiR~FLl~~~~kv~al~~~~~~ll~lL~e~--~~~--l~~~~~~~e--~~~~~~i~E~~~y~ 657 (938)
+|.||+.++|+|+|+||++ ||+.|.+. +.+.++-. ++. .....+... ++++++++||+||+
T Consensus 487 -------~~~eAl~~~n~l~R~FL~~--gkl~AAr~----l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~E~~~y~ 553 (697)
T PF04121_consen 487 -------QYPEALKQANALYRRFLLN--GKLAAARE----LFERLPFDSLIKNYSLQLQEDDLSSEEESENAIREYLCYR 553 (697)
T ss_dssp -------GHHHHHHHHHHHHHHHHHT--T-HHHHHH----HHHHS-TTHHHHHHHT--------HHHH--HHHHHHHHHH
T ss_pred -------cHHHHHHHHHHHHHHHHHc--CCHHHHHH----HHHhCCHHHHHHHHhhcccccCCCCcchHHHHHHHHHHHH
Confidence 5779999999999999988 66764433 33322211 011 111112222 33678999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045469 658 EYYSCDATYRKWLKIEL 674 (938)
Q Consensus 658 ~yl~~~~~~~~W~k~~~ 674 (938)
.|++++++|++|+++++
T Consensus 554 ~ll~a~~~~~~W~~~~~ 570 (697)
T PF04121_consen 554 ALLEALDAFEEWFKLFS 570 (697)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999999976
No 2
>KOG1964 consensus Nuclear pore complex, rNup107 component (sc Nup84) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-95 Score=831.87 Aligned_cols=621 Identities=22% Similarity=0.330 Sum_probs=495.9
Q ss_pred CCCcchhHHHH----Hhhhhhhhccccc----Cc---cchhhhhHHHHHHHHHHhhccCCCCCCccccCCCCCcHHHH-H
Q 045469 18 DSDVGVDSIHR----FGSQSLKACKIED----DS---LTDSGETTFALFASLLDSALQGTEEPPVELILSPSTSHIEA-C 85 (938)
Q Consensus 18 ~~~~~~~~~r~----~~~~alk~~~~~~----~~---~~e~Ea~TW~Ll~~L~~~R~~~~~e~~~~~~~~~ysS~~~~-~ 85 (938)
-.-++|+++++ +|+...+..|..+ ++ .|++|+.||+||.+||.+|+++-+.... .+|+++|++.+ +
T Consensus 58 n~~~~f~li~~~~eic~e~~~ql~k~~d~sn~~s~~~~~~~Ea~tW~Lv~sLy~~R~se~d~e~~--e~~~~sS~~~v~e 135 (800)
T KOG1964|consen 58 NGQISFLLITELHEICGEVVEQLRKEPDGSNYESSSQLWALEAVTWRLVLSLYTFRISELDLETV--EVHALSSRKLVEE 135 (800)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccce--ecccccchHHHHH
Confidence 45678999998 8899999999988 42 6899999999999999999977663333 46899999999 9
Q ss_pred HHhhcchhHHHHHHHHHHHHHhhccCcchhhhhcCCCccccCCCCCCchhhHHHHHcC-------CCCCCCccccCCCCC
Q 045469 86 QFVVNDHTAQLCLRIVQWLEGLASKSLDLESKVRGSHVGTYLPNSGVWHHTQRYLKKG-------VADANTVHHLDFDAP 158 (938)
Q Consensus 86 ~fL~~D~~~rE~~iVl~WLE~~A~~~~d~e~~vrg~~~g~~~~~~~~W~nT~~aLK~~-------~~~~~lVtqLDPDAP 158 (938)
++++.|+++|++++|++|||.+.++++.++.- .++..|++|.+++|++ +.+.++||.||||||
T Consensus 136 kL~~~n~e~rq~~iV~~Wle~~~~e~~~ie~~----------~~~~~~e~~~~k~knr~~S~~~~~~~~~~vt~lDpDAp 205 (800)
T KOG1964|consen 136 KLYQENVELRQIQIVVDWLEDAISEQPQIEKG----------LNDKVWERELIKLKNRQGSMFALGIPTFGVTNLDPDAP 205 (800)
T ss_pred HHHhhCHHHHHHHHHHHHHHhhhcCCcchhhh----------ccceeeeccchhhhccccchhhcCCCCcccccCCCCCC
Confidence 99999999999999999999887776444421 3467899999999864 346789999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhcCcHHHHHHHHHHcCCcchhhhcCcCCccCCC--CchHHHhhccCcchhhhhh
Q 045469 159 TREHAHQLPDDKKQDESLLEDVWTLLRAGRQEEACDLCRSAGQPWRAATLCPFGVIDFS--PSVEALIKNGRSRTLQAIE 236 (938)
Q Consensus 159 ~Rq~~~L~~~D~~~E~~l~k~if~LLRaGrleeA~elC~~~Gq~WRAASL~g~GG~~~~--P~~d~~~~n~~~~~l~~~e 236 (938)
+|++++|+..|+++|++|++++|+|||+|+++||.++|+++||.||||+|+ |++.| |+++ .+.|
T Consensus 206 lRe~~pLd~~D~e~e~~~~k~~F~LIRaG~~deal~Lck~~G~~wr~A~Lq---G~~~y~dPnl~-----------i~~E 271 (800)
T KOG1964|consen 206 LREDAPLDKLDQEDEQRFFKYIFELIRAGETDEALELCKRLGNGWRAAILQ---GISEYRDPNLD-----------IPLE 271 (800)
T ss_pred CCCCCCCchhhhHHHHHHHHHHHHHHHccchHHHHHHHHHhCcHHHHHHHH---HHHHhhCCCcc-----------chhh
Confidence 999999999999999999999999999999999999999999999999999 78888 6443 1334
Q ss_pred hcccCCchhH-HHHHHHHhhhHHHhhhcCChHHHHHHHHHcCCCcccccccCC-HHHHHHHHHHHHHHHHHHHHHHhhCC
Q 045469 237 LESGIGHQWR-LWKWASYCTSEKIFEQRGSKFEAAIYAAQCSNLKHVLPICTN-WETACWAMAKSWLGVQLDLELARSQP 314 (938)
Q Consensus 237 ~e~~~Gn~r~-LWK~~~~C~s~kla~~~~~~YERAIYgaLsGdl~~vL~vC~S-WED~LWAy~nall~~rvd~~L~~~~~ 314 (938)
.....||||+ +||++||.+++ +++.|.||||+||+|||++++++|+|.| |||.+|||+|++++++|++|+.. +|
T Consensus 272 ~~~~eGn~~k~lwrrs~~~ltq---~k~~d~YeRA~y~~lSG~l~nl~~l~~s~Wed~vWAy~n~~v~~~ie~~l~~-a~ 347 (800)
T KOG1964|consen 272 ASPQEGNKYKRLWRRSCYQLTQ---EKSQDSYERAIYGALSGILGNLLPLLKSGWEDKVWAYLNSMVQARIEAYLGA-AP 347 (800)
T ss_pred hCcccCCcHHHHHHHHHHHHHH---hhccChHHHHHHHHHhccccchhhHHhcchHHHHHHHHHHHHHHHHHHHHhh-cc
Confidence 4556799975 99988776665 8899999999999999999999999998 99999999999999999999987 22
Q ss_pred CccccccccCcccCCCCCCCCCCCCCCCCCCCCchhcccCChhhHHHHHHHHhcCcCcchhhhhhhhhHHHHHHHHHHhC
Q 045469 315 GRMEQVKSFGDEIEGSPGQMNGISQPSVGPESWPVQVLNQQPRDLSALLQKLHSGEMVHEVVTQVCKEQQRQIEMKLMLG 394 (938)
Q Consensus 315 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~p~~~w~~~~l~~~p~sl~~iL~~L~s~~~~~~~v~~Ea~~P~rvIQ~~IIl~ 394 (938)
-.. .. +.|..+| .-|.|.+.||++|.++ +..++..++.+|++++|.++|+|
T Consensus 348 ~~~---------tq------------~~p~~~~------~~~lT~e~ifeEL~~~--~~a~v~~ea~~~i~ilq~~lIld 398 (800)
T KOG1964|consen 348 LNE---------TQ------------ETPSDLF------NGPLTSELIFEELRNE--ADARVEEEAQHPIDILQNHLILD 398 (800)
T ss_pred ccc---------cC------------CChhhhc------CCcCcHHHHHHHHHHH--hhhcchhhhhchHHHHHHHHHHH
Confidence 110 00 1222333 1356889999999876 46788899999999999999999
Q ss_pred ChhHHHHHHHHhhcCCCCCcCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCCcccccccchHHHHHHHHHHHHHhCCCcc
Q 045469 395 NIPHVLQLIWSWIAPSEDDQNVFRPHGDPQMIRFGAHLVLVLRYLLTDELKDPFRKDLMDAGDLIIHMYAMFLFSEHHEE 474 (938)
Q Consensus 395 ~i~~Ll~~~~~~l~~~~~~~~~l~~~~~p~lLRflaHLvLfLr~l~~~~~~~~~~e~~~~~~~~II~aYI~~L~~~g~~e 474 (938)
+++.+++++..|+.+.... ...||+|||||||+||++.+|.. ++ + ....+||.+||+.|+..|++.
T Consensus 399 ~~~~li~s~~~~l~~~~ng------~~~p~lLRimtHlvlfl~~~G~~-~~----E---~~s~~II~~YieLL~~~g~~~ 464 (800)
T KOG1964|consen 399 LIKELIESVVEWLEKDRNG------QVPPHLLRIMTHLVLFLRISGLE-VN----E---DGSAKIILTYIELLARSGHKN 464 (800)
T ss_pred HHHHHHHHHHHHHHhcccC------CCChHHHHHHHHHHHHHHHhCCC-cc----c---cchHHHHHHHHHHHHhcCCcc
Confidence 9999999999999876432 13499999999999999999953 21 1 466889999999999999999
Q ss_pred hHhhhhccCCchhhHHHHHHHhhhhcCchhhHHHHHHHHHhhhCCCCCCCCccchHHHHHHHHHhhhhhhcc--CCcCCC
Q 045469 475 LVGVYASQLARHRCIDLFVHMMELRLNSSVHVKYKIFLSAMEYLPFSSGDDLKGSFEEIIERVLSRSREIKL--GKYDKS 552 (938)
Q Consensus 475 LIplYaS~Lp~~~~ie~ys~~Ls~i~d~s~~~k~~~fle~~~~l~~~~~~~~~~~l~~I~kr~ve~~r~~~~--~~~d~~ 552 (938)
|||+|+.|||++++++.||+||+++.++++|.++ ++++++ ....+.+|+++|||++|..+. +++.++
T Consensus 465 lia~Yt~~L~e~l~l~~ys~fL~sVde~e~R~~~---le~akq--------~~LDv~~ia~~~ve~Ir~e~~~~~E~~~~ 533 (800)
T KOG1964|consen 465 LIAFYTRFLPEDLQLEAYSRFLESVDEDEEREIQ---LELAKQ--------ADLDVGRIARTTVENIRKEDKTVGEESHI 533 (800)
T ss_pred hhHHHHHhCCchhhHHHHHHHHHHcCChhHHHHH---HHHHHH--------cCCCHHHHHHHHHHHHHHhccCccccccc
Confidence 9999999999999999999999999888888766 588877 466789999999999998766 777663
Q ss_pred -------cchhhhhchhhhhhhhhhccccccCCCccchhhhhHHHHHHHHHHHHHHHHHHHHhhhcCcCCCCccc--hhH
Q 045469 553 -------TDVAEQHRLQSLQKAMVIQWLCFTPPSTIADVKDVSAKLLLRALIHSNILFREFALISMWRVPAMPIG--AHE 623 (938)
Q Consensus 553 -------~dVse~~r~~D~~li~aieWL~f~p~~~~~~~~~~~~kl~~dAL~~sN~LiR~FLl~~~~kv~al~~~--~~~ 623 (938)
+.|+++ |+++|.+++||++.|.+| .+|+.++|+++|+||.+ ||+++++.. ...
T Consensus 534 d~~~~l~sgv~~~----d~~~I~~leWLv~~p~q~------------~e~l~s~nai~RkfL~~--~k~k~l~q~~~~ip 595 (800)
T KOG1964|consen 534 DHWPWLLSGVEEI----DLALIEELEWLVRKPMQR------------TEALESANAIIRKFLAS--GKVKALSQAFENIP 595 (800)
T ss_pred cchHHHhcccCHH----HHHHHHHHHHHHhhHHHh------------hHHHHHHHHHHHHHHhc--cchHHHHHHHHhCc
Confidence 457776 999999999999988654 59999999999999988 678876662 111
Q ss_pred HhhhhhhhhhhccCCCCCCC--cchHhhHHHHHhHHHHHHHHHHHHHHHHHHHhcCC--CC--CCcCCHHHHH-------
Q 045469 624 LLSFLAEPLKQLSENPDTLE--DNVSENLKEFQDWSEYYSCDATYRKWLKIELENAN--VP--ALELSLEEKQ------- 690 (938)
Q Consensus 624 ll~lL~e~~~~l~~~~~~~e--~~~~~~i~E~~~y~~yl~~~~~~~~W~k~~~~n~~--~~--~~~l~~ee~~------- 690 (938)
.. ++++-. ..++...+.+ +.-+++++||.||+.|+++.+-|.+|.+. ..++- .| ..+++.|-++
T Consensus 596 ~d-~I~~~~-~~e~~~G~~~~i~~~e~~~~E~~~y~a~l~~~~~~~EW~k~-~~~a~~~q~~f~d~lsse~~ek~~~t~~ 672 (800)
T KOG1964|consen 596 VD-LITDLY-SFEQKPGSQSNIPKEEDAALEFLCYRALLDGNNFYIEWAKL-LGLAFSYQPIFTDELSSEGKEKRLDTTA 672 (800)
T ss_pred HH-HHHHhH-HHhhcCCCcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccccCCcchHHHHhhhccchhccchH
Confidence 11 233211 1222222222 33455899999999999999999999998 45542 22 3666666663
Q ss_pred -----HHHHHHHHHHHHHHHHhhccCCCccccCCCCc-chhhHHhh-HHHhhhhhhcCCCC
Q 045469 691 -----RAIAAAQETLNMSLILLQRKENPWLVSLEDPI-YESVEALY-LELHATAILCLPSG 744 (938)
Q Consensus 691 -----~~~~~a~~~l~~~~~ll~~~~~~wl~~~~~~~-~~~~~~~~-~e~~~~~~~~~~~~ 744 (938)
..-..|+.+.+....+|.....|||+++-.+. -+. +... +.+--.+-+|+|-.
T Consensus 673 ~iWk~~lk~~ak~t~el~~~vL~~~~a~w~~d~~~e~~~d~-d~~~~~~l~~iR~l~~P~l 732 (800)
T KOG1964|consen 673 AIWKASLKVLAKATQELRKNVLKFLDAGWLVDVMVEQALDT-DHRRLVQLIGIRPLYSPEL 732 (800)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcccccccchhhhhcccC-cHHHHHHHHHHHHhhcHHH
Confidence 23466777778888888888999999931111 111 2222 34444455788765
No 3
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=96.77 E-value=0.027 Score=68.85 Aligned_cols=187 Identities=16% Similarity=0.269 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHcCCcchhhhcCcCCccCCCC-chHHHhhccCcchhhhhhhcccCCch-hHHHHH
Q 045469 173 DESLLEDVWTLLRAGRQEEACDLCRSAGQPWRAATLCPFGVIDFSP-SVEALIKNGRSRTLQAIELESGIGHQ-WRLWKW 250 (938)
Q Consensus 173 E~~l~k~if~LLRaGrleeA~elC~~~Gq~WRAASL~g~GG~~~~P-~~d~~~~n~~~~~l~~~e~e~~~Gn~-r~LWK~ 250 (938)
...+|-.||-+||||.+++|.+.+++..+.-... .+.++ .+.....+ +++.+ +.+ .-++ +.-|+.
T Consensus 111 ~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~-------~~~f~~~l~~~~~s-~~~~l-~~~----~~~~l~~ey~~ 177 (613)
T PF04097_consen 111 GDPIWALIYYCLRCGDYDEALEVANENRNQFQKI-------ERSFPTYLKAYASS-PDRRL-PPE----LRDKLKLEYNQ 177 (613)
T ss_dssp TEEHHHHHHHHHTTT-HHHHHHHHHHTGGGS-TT-------TTHHHHHHHHCTTT-TSS----TC----CCHHHHHHHHH
T ss_pred CCccHHHHHHHHhcCCHHHHHHHHHHhhhhhcch-------hHHHHHHHHHHHhC-CCCCC-CHH----HHHHHHHHHHH
Confidence 3446999999999999999999995443211100 01111 11111111 11111 111 1112 124442
Q ss_pred HHHhhhHHHhh-hcCChHHHHHHHHHcC-CC-cccc-cccCCHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccccCcc
Q 045469 251 ASYCTSEKIFE-QRGSKFEAAIYAAQCS-NL-KHVL-PICTNWETACWAMAKSWLGVQLDLELARSQPGRMEQVKSFGDE 326 (938)
Q Consensus 251 ~~~C~s~kla~-~~~~~YERAIYgaLsG-dl-~~vL-~vC~SWED~LWAy~nall~~rvd~~L~~~~~~~~~~~~s~~~~ 326 (938)
++.+ ...|+|-+|||.+|.+ |+ ..-+ .|+.|=||+||.++..+ +...++.
T Consensus 178 -------~~r~~~~~DpyK~AvY~ilg~cD~~~~~~~~V~~tiED~LW~~L~~v---------r~~~~~~---------- 231 (613)
T PF04097_consen 178 -------RIRNSTDGDPYKRAVYKILGRCDLSRRHLPEVARTIEDWLWLQLSLV---------REDERSS---------- 231 (613)
T ss_dssp -------HTTT-TTS-HHHHHHHHHHHT--CCC-S-TTC--SHHHHHHHHHHH------------TTSSS----------
T ss_pred -------HhcCCCCCChHHHHHHHHHhcCCccccchHHHhCcHHHHHHHHHHhh---------ccCCCcc----------
Confidence 1221 2239999999999977 66 2223 78999999999999532 1111000
Q ss_pred cCCCCCCCCCCCCCCCCCCCCchhcccCChhhHHHHHHHHhcCcCcchhhhhhhhhHHHHHHHHHHhCChhHHHHHHHHh
Q 045469 327 IEGSPGQMNGISQPSVGPESWPVQVLNQQPRDLSALLQKLHSGEMVHEVVTQVCKEQQRQIEMKLMLGNIPHVLQLIWSW 406 (938)
Q Consensus 327 ~~~~~~~~~~~~~~~~p~~~w~~~~l~~~p~sl~~iL~~L~s~~~~~~~v~~Ea~~P~rvIQ~~IIl~~i~~Ll~~~~~~ 406 (938)
. + + .+.. .-.++.+.+.+.-.+ +- ....+|.--.|.-++.+.++.=++-+.+
T Consensus 232 --~-~---------~--~e~~-------~L~~LQ~~i~~~Ge~---~F---~~~~~p~~Yf~~LlLtgqFE~AI~~L~~- 283 (613)
T PF04097_consen 232 --S-S---------A--YERY-------TLEDLQKLILKYGES---HF---NAGSNPLLYFQVLLLTGQFEAAIEFLYR- 283 (613)
T ss_dssp --S-S---------S--S-----------HHHHHHHHHHH-GG---GC---TT------HHHHHHHTT-HHHHHHHHHT-
T ss_pred --c-c---------c--cccc-------cHHHHHHHHHHhchh---hc---ccchhHHHHHHHHHHHhhHHHHHHHHHh-
Confidence 0 0 0 0000 112344444433221 11 1156777778999999999886665422
Q ss_pred hcCCCCCcCCCCCCCCCChHHH-HHHHHHHHHHhcCC
Q 045469 407 IAPSEDDQNVFRPHGDPQMIRF-GAHLVLVLRYLLTD 442 (938)
Q Consensus 407 l~~~~~~~~~l~~~~~p~lLRf-laHLvLfLr~l~~~ 442 (938)
....|+ .+|+.|.|...|-.
T Consensus 284 ----------------~~~~~~dAVH~AIaL~~~gLL 304 (613)
T PF04097_consen 284 ----------------NEFNRVDAVHFAIALAYYGLL 304 (613)
T ss_dssp ------------------T-HHHHHHHHHHHHHTT--
T ss_pred ----------------hccCcccHHHHHHHHHHcCCC
Confidence 112233 57999999998854
No 4
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=96.47 E-value=0.14 Score=62.05 Aligned_cols=255 Identities=19% Similarity=0.184 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHcCCcch-----hhhcCcCCccCCCCchHHHhhccCcchhhhhhhcccCCchhHHH
Q 045469 174 ESLLEDVWTLLRAGRQEEACDLCRSAGQPWR-----AATLCPFGVIDFSPSVEALIKNGRSRTLQAIELESGIGHQWRLW 248 (938)
Q Consensus 174 ~~l~k~if~LLRaGrleeA~elC~~~Gq~WR-----AASL~g~GG~~~~P~~d~~~~n~~~~~l~~~e~e~~~Gn~r~LW 248 (938)
..||.++..+|.+|++++|+++-+..+..=. ++...- .=+..+|.+.. .++ .+ .......++-|
T Consensus 149 p~FW~~v~~lvlrG~~~~a~~lL~~~s~~~~~~~~~~~~~~~-~LL~~~P~~~~--~~~--~s------~~~f~~~~~~W 217 (566)
T PF07575_consen 149 PDFWDYVQRLVLRGLFDQARQLLRLHSSYQSYSLQSAFEALI-QLLSSMPRYRP--NSG--QS------ESEFSSQWREW 217 (566)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHH-TTTTTTTHHHHHHHHHHH-HHHTT----------------------SS-HHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHhcccccchhHHHHHHHHH-HHHHhCCCccc--cch--hh------hHHHHHHHHHH
Confidence 5789999999999999999999965554110 100000 00123353321 000 00 01112234568
Q ss_pred HHHHHhhhHH---Hhh--hcCChHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccccc
Q 045469 249 KWASYCTSEK---IFE--QRGSKFEAAIYAAQCSNLKHVLPICTNWETACWAMAKSWLGVQLDLELARSQPGRMEQVKSF 323 (938)
Q Consensus 249 K~~~~C~s~k---la~--~~~~~YERAIYgaLsGdl~~vL~vC~SWED~LWAy~nall~~rvd~~L~~~~~~~~~~~~s~ 323 (938)
|. .|.... ..+ ....+.=+-|+.+|+||-+.+...|.+|-+.+=+++ .|.. | .+
T Consensus 218 ~~--~~~~l~~~~~~~~~~~~~~~L~~l~~Il~G~~~~i~~~~~~WyE~~~a~~---------ly~~---P-~~------ 276 (566)
T PF07575_consen 218 KS--ECRRLRSSSLQDGPFEIRENLEDLLKILLGDEDTILEYSQDWYEALVALL---------LYVD---P-TC------ 276 (566)
T ss_dssp HH--HHHHHHHHS---S-HHHHHHHHHHHHHHHT-HHHHHHT-SSHHHHHHHHH---------HHT--------------
T ss_pred HH--HHHHHHHHhhccCchhhHHHHHHHHHHHCCCHHHHHHHhCcHHHHHHHhh---------eeeC---C-Cc------
Confidence 84 454311 111 124555688999999999999999999999888776 1110 0 00
Q ss_pred CcccCCCCCCCCCCCCCCCCCCCCchhcccCChhh-HHHHHHHHhcCcCcchhhhhhhhhHHHHHHHHHHhCChhHHHHH
Q 045469 324 GDEIEGSPGQMNGISQPSVGPESWPVQVLNQQPRD-LSALLQKLHSGEMVHEVVTQVCKEQQRQIEMKLMLGNIPHVLQL 402 (938)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~p~~~w~~~~l~~~p~s-l~~iL~~L~s~~~~~~~v~~Ea~~P~rvIQ~~IIl~~i~~Ll~~ 402 (938)
.+.+ +..+++..-+. ......+|.-.+..+|+.+|+...+..
T Consensus 277 -------------------------------~~~e~l~~~a~~~~~~------~~~~~~~~~e~~~~~i~~~d~~~vL~~ 319 (566)
T PF07575_consen 277 -------------------------------KPFELLHEYAQSCLEE------FPPDSTNPLEQILLAIFEGDIESVLKE 319 (566)
T ss_dssp ---------------------------------TTTHHHHHHHHHHH------S---TTSTTHHHHHHHHTS--GGGHHH
T ss_pred -------------------------------chhhhHHHHHHHHHhc------CCCCCCCHHHHHHHHHHccCHHHHHHH
Confidence 0112 44444443221 012245666778899999999999888
Q ss_pred HHHhhcCCCCCcCCCCCCCCCChHHHHHHHHHHHHHhcCCCCC--CcccccccchHHHHHHHHHHHHHhC-CCcchHhhh
Q 045469 403 IWSWIAPSEDDQNVFRPHGDPQMIRFGAHLVLVLRYLLTDELK--DPFRKDLMDAGDLIIHMYAMFLFSE-HHEELVGVY 479 (938)
Q Consensus 403 ~~~~l~~~~~~~~~l~~~~~p~lLRflaHLvLfLr~l~~~~~~--~~~~e~~~~~~~~II~aYI~~L~~~-g~~eLIplY 479 (938)
+..+..+ .=|+||++=++...|..... ..+. .....+-.+..|.+.|... +..++-.-|
T Consensus 320 ~~~~~~~----------------~w~aahladLl~~~g~L~~~~~~~~~--~~~lre~~ll~YA~~L~s~~~lW~vai~y 381 (566)
T PF07575_consen 320 ISSLFDD----------------WWFAAHLADLLEHKGLLEDSEQEDFG--GSSLREYLLLEYASSLMSHHSLWQVAIGY 381 (566)
T ss_dssp HHHH--H----------------HHHHHHHHHHHHHTTSS--SS-------TS-HHHHHHHHHHHHHHT-TTTHHHHHHH
T ss_pred HHHHccc----------------hhHHHHHHHHHHhcCccccccccccc--cccHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 7554321 23689999999888753200 1111 0245677999999999984 568999999
Q ss_pred hccCCchhhHHHHHHHhhhhcCchhhHHHHHHHHHhhh
Q 045469 480 ASQLARHRCIDLFVHMMELRLNSSVHVKYKIFLSAMEY 517 (938)
Q Consensus 480 aS~Lp~~~~ie~ys~~Ls~i~d~s~~~k~~~fle~~~~ 517 (938)
.+..|..- ......+|..++=.+.+ +-.-.++.+..
T Consensus 382 L~~c~~~g-~~~i~~lL~~~p~~t~~-~~~k~l~iC~~ 417 (566)
T PF07575_consen 382 LSSCPDEG-RERIEELLPRVPLDTND-DAEKLLEICAE 417 (566)
T ss_dssp HHS-SSS--HHHHHHHGGG----SHH-HHHHHHHHHHH
T ss_pred HHHCChhh-HHHHHHHHhhCCCCchH-HHHHHHHHHHH
Confidence 99988655 67777788777433333 23333444443
No 5
>PF12110 Nup96: Nuclear protein 96; InterPro: IPR021967 Nup96 (often known by the name of its yeast homologue Nup145C) is part of the Nup84 heptameric complex in the nuclear pore complex. Nup96 complexes with Sec13 in the middle of the heptamer. The function of the heptamer is to coat the curvature of the nuclear pore complex between the inner and outer nuclear membranes. Nup96 is predicted to be an alpha helical solenoid. The interaction between Nup96 and Sec13 is the point of curvature in the heptameric complex [], [].; PDB: 3BG1_C 3BG0_F 3IKO_B.
Probab=94.88 E-value=0.75 Score=51.32 Aligned_cols=223 Identities=21% Similarity=0.194 Sum_probs=111.9
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHcCCcchhhhcCcCCccCCCCchHHHhhccCcchhhhhhhcccCCchhHHHHHHHHhhh
Q 045469 177 LEDVWTLLRAGRQEEACDLCRSAGQPWRAATLCPFGVIDFSPSVEALIKNGRSRTLQAIELESGIGHQWRLWKWASYCTS 256 (938)
Q Consensus 177 ~k~if~LLRaGrleeA~elC~~~Gq~WRAASL~g~GG~~~~P~~d~~~~n~~~~~l~~~e~e~~~Gn~r~LWK~~~~C~s 256 (938)
++.+|.+|-+|++++|.+.|.+.|++=.|..|.=.||. |..-.. +-++-.-||. ...
T Consensus 3 le~if~~L~~~~i~~A~~~A~~~~n~~LA~Llsq~~~~---~~~r~~-----------------~~~QL~~W~~--~~~- 59 (290)
T PF12110_consen 3 LEKIFLLLSGHDIEEACELAIDSGNPHLATLLSQIGGD---PAVRSL-----------------AKQQLEDWRE--SGA- 59 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHH-----------------HHHHHHHTTS--SSS-
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCchHHHHHHHhcCC---HHHHHH-----------------HHHHHHHHHh--CCC-
Confidence 57899999999999999999999999888888621221 222110 0122346773 111
Q ss_pred HHHhhhcCChHHHHHHHHHcCCCccccc-----cc--CCHHHHHHHHHH------HHHHHHHHHHHHhhCCCcccccccc
Q 045469 257 EKIFEQRGSKFEAAIYAAQCSNLKHVLP-----IC--TNWETACWAMAK------SWLGVQLDLELARSQPGRMEQVKSF 323 (938)
Q Consensus 257 ~kla~~~~~~YERAIYgaLsGdl~~vL~-----vC--~SWED~LWAy~n------all~~rvd~~L~~~~~~~~~~~~s~ 323 (938)
....++.=+.||.+|+|++..... +| -+|--.|=.++- .-+..-|..|......
T Consensus 60 ----~~~I~~~~~~iY~LLAG~~~~~~~~~~~~~~~~LdW~~~lgl~lwY~~~~~~sl~~~v~~y~~~~~~--------- 126 (290)
T PF12110_consen 60 ----DSFIDEPRRKIYELLAGNVFWSSGNKGINICEGLDWKRALGLHLWYGDPPDASLEDAVQSYEEAFSK--------- 126 (290)
T ss_dssp ------SS-HHHHHHHHHHHS-SSSSTT-SGGG-GGTS-HHHHHHHHHHTTTTSSS-HHHHHHHHHHHS-----------
T ss_pred ----CeecCHHHHHHHHHhcCCCcccccccccccCCCCCHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHh---------
Confidence 346899999999999999866553 23 489887655442 1233334444332110
Q ss_pred CcccCCCCCCCCCCCCCCCCCCCCchhcccCChhhHHHHHHHHhcCcCcchhhhhhhhhHHHHHHHHHH-hCChhHHHHH
Q 045469 324 GDEIEGSPGQMNGISQPSVGPESWPVQVLNQQPRDLSALLQKLHSGEMVHEVVTQVCKEQQRQIEMKLM-LGNIPHVLQL 402 (938)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~p~~~w~~~~l~~~p~sl~~iL~~L~s~~~~~~~v~~Ea~~P~rvIQ~~II-l~~i~~Ll~~ 402 (938)
..+..|.|+ |-. ..+ .... .. ...-..--|++++.+.= ...++.+++-
T Consensus 127 ------------~~~~~P~P~-y~~-------~~~-------~~~~---~~-~~~~~D~~~~LLkly~~~~~~l~~~L~p 175 (290)
T PF12110_consen 127 ------------GEAAPPLPP-YAE-------RNS-------SWDD---SN-SEPREDLLYHLLKLYADRSHSLEQVLNP 175 (290)
T ss_dssp -------------------------------------------------------TT-HHHHHHHHH-HSGTTHHHHHHH
T ss_pred ------------hhccchhhh-hhh-------ccc-------cccc---cc-CCCCcCHHHHHHHhhcCCCCCHHHHhCh
Confidence 011223331 100 000 0000 00 00001223444555411 1234444443
Q ss_pred HHHhhcCCCCCcCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCCcccccccchHHHHHHHHHHHHHhCCCcchHhhhhcc
Q 045469 403 IWSWIAPSEDDQNVFRPHGDPQMIRFGAHLVLVLRYLLTDELKDPFRKDLMDAGDLIIHMYAMFLFSEHHEELVGVYASQ 482 (938)
Q Consensus 403 ~~~~l~~~~~~~~~l~~~~~p~lLRflaHLvLfLr~l~~~~~~~~~~e~~~~~~~~II~aYI~~L~~~g~~eLIplYaS~ 482 (938)
.. - ..++-=-|+-=||+-+|+.+|... . .+ ...+.|...|++.|...|+.+.--|=..+
T Consensus 176 ~~----~----------s~~~lD~~l~W~l~~~L~~~~~~~-~---~~---~~~d~lt~~fa~QLe~~glw~~AlfVllh 234 (290)
T PF12110_consen 176 LS----S----------SPSPLDYRLSWHLYQVLRALGYRH-D---SE---DRADQLTLSFASQLESLGLWEWALFVLLH 234 (290)
T ss_dssp HH----T----------T-SSS-HHHHHHHHHHHHTTSSS-------H---HHHHHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred hc----c----------CCCccCChhHhHHHHHHHHcCCCc-c---Cc---cHHHHHHHHHHHHHHhCCccHHHHHHHhc
Confidence 21 0 123445688899999999998632 1 11 35588999999999999997766665566
Q ss_pred CCchh
Q 045469 483 LARHR 487 (938)
Q Consensus 483 Lp~~~ 487 (938)
|+++.
T Consensus 235 l~d~~ 239 (290)
T PF12110_consen 235 LSDDS 239 (290)
T ss_dssp -S-HH
T ss_pred CCCHH
Confidence 66644
No 6
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=93.31 E-value=0.087 Score=65.17 Aligned_cols=102 Identities=21% Similarity=0.286 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHcCCcc-hhhhcCcCCccCCCCchHHHhhccCcchhhhhhhcccCCchhH-HHHHH
Q 045469 174 ESLLEDVWTLLRAGRQEEACDLCRSAGQPW-RAATLCPFGVIDFSPSVEALIKNGRSRTLQAIELESGIGHQWR-LWKWA 251 (938)
Q Consensus 174 ~~l~k~if~LLRaGrleeA~elC~~~Gq~W-RAASL~g~GG~~~~P~~d~~~~n~~~~~l~~~e~e~~~Gn~r~-LWK~~ 251 (938)
..+|--+|-++|||.+++|.+.-.+.+..- .-+.+- |.. .|+....+ ....-++.+ =|+.
T Consensus 326 ~P~W~~vyy~lR~G~lk~A~~~l~e~~~~~~~l~~~f--------~~y----~~A~~~~~-----~~~le~qlrl~~~~- 387 (835)
T KOG2168|consen 326 VPLWPLVYYLLRCGDLKAASQFLNENKDFFEKLAELF--------PTY----FNAYAKNL-----SSKLEKQLRLRLRS- 387 (835)
T ss_pred ccchHHHHHHHhhhhHHHHHHHHHHhhhhHHHHHHHH--------HHH----HHhhhcCC-----CccccHHHHHHHHH-
Confidence 667999999999999999999999988654 112221 211 01100000 000111222 2331
Q ss_pred HHhhhHHHhhhcCChHHHHHHHHHcC-CCcccc-cccCCHHHHHHHHHHH
Q 045469 252 SYCTSEKIFEQRGSKFEAAIYAAQCS-NLKHVL-PICTNWETACWAMAKS 299 (938)
Q Consensus 252 ~~C~s~kla~~~~~~YERAIYgaLsG-dl~~vL-~vC~SWED~LWAy~na 299 (938)
++-....|+|=+|||.+|.| |+.... .||.+=|||||-.+..
T Consensus 388 ------~l~~~~~DpyK~AvY~iig~cd~~~~~~ev~~tiED~LW~kL~~ 431 (835)
T KOG2168|consen 388 ------ELGRNSTDPYKLAVYKIIGGCDLRRDLPEVADTIEDFLWFKLSL 431 (835)
T ss_pred ------HhccccCChHHHHHHHHHhcCccccccHHHHhHHHHHHHHHHHh
Confidence 22233689999999999999 775555 5899999999998853
No 7
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C.
Probab=53.77 E-value=24 Score=39.39 Aligned_cols=73 Identities=22% Similarity=0.179 Sum_probs=45.7
Q ss_pred HHHHHhcCcHHHHHHHHHHcCCcchhhhcCcCCccCCCCchHHHhhccCcchhhhhhhcccCCchhHHHHHHHHhhhHHH
Q 045469 180 VWTLLRAGRQEEACDLCRSAGQPWRAATLCPFGVIDFSPSVEALIKNGRSRTLQAIELESGIGHQWRLWKWASYCTSEKI 259 (938)
Q Consensus 180 if~LLRaGrleeA~elC~~~Gq~WRAASL~g~GG~~~~P~~d~~~~n~~~~~l~~~e~e~~~Gn~r~LWK~~~~C~s~kl 259 (938)
|.++|..|+.++|.++|.+.+..--|..|.-.+| .++|+++..-+..+-
T Consensus 2 I~~~Ll~G~~~~Av~~al~~~~wa~ALlLAs~~g-------------------------------~e~~~~v~~~y~~~~ 50 (284)
T PF12931_consen 2 IQQLLLVGNREEAVELALDNGLWAHALLLASSLG-------------------------------PELWKKVVQEYFRRE 50 (284)
T ss_dssp HHHHHHTT-HHHHHHHHHHTT-HHHHHHHHHTS--------------------------------HHHHHHHHHHHHH--
T ss_pred HHHHHhCCCHHHHHHHHHHCCChHHHHHHHHhcC-------------------------------HHHHHHHHHHHHHHh
Confidence 6789999999999999999998888888851111 126776544332211
Q ss_pred hhhc-----CChHHHHHHHHHcCCCcccc
Q 045469 260 FEQR-----GSKFEAAIYAAQCSNLKHVL 283 (938)
Q Consensus 260 a~~~-----~~~YERAIYgaLsGdl~~vL 283 (938)
-..+ ....=+.+|.+++||.+.+.
T Consensus 51 ~~~~~~~~~~~~~L~~l~~v~~g~~~~~v 79 (284)
T PF12931_consen 51 FSAGSPSSKITHLLRTLYQVFSGNSPEAV 79 (284)
T ss_dssp ------THHHHHHHHHHHHHTTT-HHHHH
T ss_pred ccCCCCcchhhHHHHHHHHHHcCCcHHHH
Confidence 0111 12456899999999997664
No 8
>COG1901 Uncharacterized conserved protein [Function unknown]
Probab=29.64 E-value=83 Score=33.51 Aligned_cols=75 Identities=21% Similarity=0.278 Sum_probs=59.2
Q ss_pred hhhhhHhhhhhchhhHHhhhcceEEEEEEe--cCCCceeheehhhccccCCCcccccCCCchhHHHHHHhhhcccccc-c
Q 045469 753 MCTALMSALYSTLSEEVVLNRELMVNVSIS--SSNNYCIEVVLRCLAVEGDGLGIHDMSDGGVLGTVMAAGFKGELTR-F 829 (938)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~a~~~kg~l~~-~ 829 (938)
+|-+.++||+-+.| +.+...|-+-.- |.++-||-|...|+- .+..++.|=.+.+.-++++..+++-.+ -
T Consensus 32 lcRc~~~alf~sh~----~R~dV~v~lvL~G~p~ppktI~~~g~~~~----~~~pdErs~a~~i~kAL~~~~~~~~~~~~ 103 (197)
T COG1901 32 LCRCVSSALFLSHG----IRRDVVVYLVLLGPPDPPKTIRVEGSELR----YLNPDERSLAILIKKALDAELGKEQTREV 103 (197)
T ss_pred HHHHHhHHHHHhcc----ccCceEEEEEEecCCCCCEEEEEEccccc----ccCcchHHHHHHHHHHHHhhccccceeec
Confidence 89999999998844 566666666653 556677766666654 578999999999999999999998888 6
Q ss_pred CCCcee
Q 045469 830 QAGVTM 835 (938)
Q Consensus 830 ~~~~~~ 835 (938)
|||++.
T Consensus 104 ~pGi~V 109 (197)
T COG1901 104 TPGIYV 109 (197)
T ss_pred CCCEEE
Confidence 889875
No 9
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=26.95 E-value=76 Score=26.03 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=20.7
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHcC
Q 045469 177 LEDVWTLLRAGRQEEACDLCRSAG 200 (938)
Q Consensus 177 ~k~if~LLRaGrleeA~elC~~~G 200 (938)
...|-+.|+.|++++|.+||....
T Consensus 5 ~~~i~~~i~~g~~~~a~~~~~~~~ 28 (58)
T smart00668 5 RKRIRELILKGDWDEALEWLSSLK 28 (58)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcC
Confidence 456788999999999999998755
No 10
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=23.40 E-value=80 Score=31.02 Aligned_cols=23 Identities=9% Similarity=0.128 Sum_probs=20.8
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHc
Q 045469 177 LEDVWTLLRAGRQEEACDLCRSA 199 (938)
Q Consensus 177 ~k~if~LLRaGrleeA~elC~~~ 199 (938)
.+.|.+.|+.|++++|.+||.+.
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~ 27 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNEN 27 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHc
Confidence 57889999999999999999874
No 11
>PF10414 CysG_dimeriser: Sirohaem synthase dimerisation region; InterPro: IPR019478 Bacterial sulphur metabolism depends on the iron-containing porphinoid sirohaem. CysG is a multi-functional enzyme with S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase, dehydrogenase and ferrochelatase activities. CysG synthesizes sirohaem from uroporphyrinogen III via reactions which encompass two branchpoint intermediates in tetrapyrrole biosynthesis, diverting flux first from protoporphyrin IX biosynthesis and then from cobalamin (vitamin B12) biosynthesis. CysG is a dimer. Its dimerisation region is 74 residues long, and acts to hold the two structurally similar protomers held together asymmetrically through a number of salt-bridges across complementary residues within the dimerisation region []. CysG dimerisation produces a series of active sites, accounting for CysG's multi-functionality, catalysing four diverse reactions: Two SAM-dependent methylations NAD+-dependent tetrapyrrole dehydrogenation Metal chelation ; GO: 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1PJT_A 1PJS_A 1PJQ_A.
Probab=23.25 E-value=97 Score=26.40 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=22.3
Q ss_pred HHHHHHHHHHH-----HHHhcCcHHHHHHHHHH
Q 045469 171 KQDESLLEDVW-----TLLRAGRQEEACDLCRS 198 (938)
Q Consensus 171 ~~E~~l~k~if-----~LLRaGrleeA~elC~~ 198 (938)
..=++||..+| +++++|+.++|......
T Consensus 25 ~~RR~FWe~~~~g~~~~~~~~g~~~~A~~~l~~ 57 (60)
T PF10414_consen 25 AERRRFWERFFDGPFAELVLAGDEEEAEALLEQ 57 (60)
T ss_dssp HHHHHHHHHHT-HHHHHHHHTT-HHHHHHHHHH
T ss_pred hHHHHHHHHHHcCHHHHHHHCCCHHHHHHHHHH
Confidence 33478899888 99999999999988765
Done!