Query 045469
Match_columns 938
No_of_seqs 180 out of 212
Neff 5.4
Searched_HMMs 29240
Date Tue Mar 26 00:04:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045469.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045469hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iko_C Nucleoporin NUP84; NPC, 100.0 1.6E-89 5.3E-94 786.2 31.6 410 18-507 31-460 (460)
2 3cqc_A Nuclear pore complex pr 99.7 1.5E-17 5.1E-22 179.2 10.8 179 553-764 7-213 (270)
3 2qx5_A Nucleoporin NIC96; mRNA 95.2 0.02 6.8E-07 68.8 6.5 105 175-298 154-263 (661)
4 3jro_A Fusion protein of prote 92.1 3.2 0.00011 49.7 17.9 203 178-487 491-700 (753)
5 3f3f_C Nucleoporin NUP85; stru 91.9 0.24 8.3E-06 58.2 7.6 105 175-297 244-361 (570)
6 3bg1_B Nucleoporin NUP145; NPC 91.2 5.5 0.00019 45.6 17.7 204 177-486 181-390 (442)
7 2pm7_A Protein WEB1, protein t 83.5 1.7 5.7E-05 49.2 7.1 210 176-486 146-365 (399)
8 3cqc_A Nuclear pore complex pr 82.5 0.47 1.6E-05 51.0 2.1 77 854-934 185-261 (270)
9 3mzk_B Protein transport prote 58.7 8.6 0.0003 44.0 5.2 79 175-284 152-236 (441)
10 4a94_C Carboxypeptidase inhibi 16.9 37 0.0013 26.7 0.6 14 739-752 8-22 (53)
No 1
>3iko_C Nucleoporin NUP84; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.20A {Saccharomyces cerevisiae} PDB: 3jro_C
Probab=100.00 E-value=1.6e-89 Score=786.22 Aligned_cols=410 Identities=17% Similarity=0.240 Sum_probs=322.0
Q ss_pred CCCcchhHHHH----Hhhhhhhhccccc-----Cc-cchhhhhHHHHHHHHHHhhccCCCCCCccccCCCCCcHHHH-HH
Q 045469 18 DSDVGVDSIHR----FGSQSLKACKIED-----DS-LTDSGETTFALFASLLDSALQGTEEPPVELILSPSTSHIEA-CQ 86 (938)
Q Consensus 18 ~~~~~~~~~r~----~~~~alk~~~~~~-----~~-~~e~Ea~TW~Ll~~L~~~R~~~~~e~~~~~~~~~ysS~~~~-~~ 86 (938)
.+-|||+++++ ++.++++..+..+ +. .|++|++||+||..||++|.+..+++ ...++||+|++++ ++
T Consensus 31 ~~~d~~~lv~~~~~i~~~~~~~~~~~~~~~~~~~~~~w~lE~~tW~Ll~~Ly~~R~~~~~~~--~~~~~~y~S~~~~~~~ 108 (460)
T 3iko_C 31 NPIDPFNIIREFRSAAGQLALDLANSGDESNVISSKDWELEARFWHLVELLLVFRNADLDLD--EMELHPYNSRGLFEKK 108 (460)
T ss_dssp ---CTHHHHHHHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCTTSCHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHhhccccccc--ccccCCCCCHHHHHHH
Confidence 47899999998 6777766655321 23 79999999999999999999765543 3467999999999 99
Q ss_pred HhhcchhHHHHHHHHHHHHHhhccCcchhhhhcCCCccccCCCCCCchhhHHHHHcCCCCCCCccccCCCCCCCCC-CCC
Q 045469 87 FVVNDHTAQLCLRIVQWLEGLASKSLDLESKVRGSHVGTYLPNSGVWHHTQRYLKKGVADANTVHHLDFDAPTREH-AHQ 165 (938)
Q Consensus 87 fL~~D~~~rE~~iVl~WLE~~A~~~~d~e~~vrg~~~g~~~~~~~~W~nT~~aLK~~~~~~~lVtqLDPDAP~Rq~-~~L 165 (938)
|+.+|+.++|+++|++|||+||+.+ +.. .+++ +++|+||+++ +.||+||||||+||+ ++|
T Consensus 109 l~~~d~~lre~~lI~~WLE~~a~~~-~~~---------~~l~-~~~W~~T~~~--------g~v~~LDPDAp~R~~~~~L 169 (460)
T 3iko_C 109 LMQDNKQLYQIWIVMVWLKENTYVM-ERP---------KNVP-TSKWLNSITS--------GGLKSCDLDFPLRENTNVL 169 (460)
T ss_dssp HHHHCHHHHHHHHHHHHHHHTCCCC-CCC---------SSCC-SSTTHHHHHT--------SCCSCCSTTHHHHSCGGGS
T ss_pred HHHhCHHHHHHHHHHHHHHHhCccc-ccc---------cccc-ccchhhhhhc--------CCCcccCCCcccccCCCCC
Confidence 9999999999999999999999875 322 1222 5899999996 569999999999998 999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCcHHHHHHHHHHcCCcchhhhcCcCCccCCC--CchHHHhhccCcchhhhhhhcccCCc
Q 045469 166 LPDDKKQDESLLEDVWTLLRAGRQEEACDLCRSAGQPWRAATLCPFGVIDFS--PSVEALIKNGRSRTLQAIELESGIGH 243 (938)
Q Consensus 166 ~~~D~~~E~~l~k~if~LLRaGrleeA~elC~~~Gq~WRAASL~g~GG~~~~--P~~d~~~~n~~~~~l~~~e~e~~~Gn 243 (938)
||+|+++|++||++||+|||+|++++|++||+++||+||||||| |+++| |++++...+ +.+..+||
T Consensus 170 ~~~D~~~e~~l~~~i~~liR~G~~~eA~~lc~~~gq~WRAasL~---G~~~~~dP~~~~~~~~---------e~~~~~Gn 237 (460)
T 3iko_C 170 DVKDKEEDHIFFKYIYELILAGAIDEALEEAKLSDNISICMILC---GIQEYLNPVIDTQIAN---------EFNTQQGI 237 (460)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHH---TTSBCBCTTTSGGGTT---------TCSSCBSB
T ss_pred CcccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHcCCHHHHHHHc---ccccccCccccccccc---------ccccccCc
Confidence 99999999999999999999999999999999999999999998 56676 777542111 23445799
Q ss_pred hhH-HHHHHHHhhhHHHhhhcCChHHHHHHHHHcCCCccccc--ccCCHHHHHHHHHHHHHHHHHHHHHHhhCCCccccc
Q 045469 244 QWR-LWKWASYCTSEKIFEQRGSKFEAAIYAAQCSNLKHVLP--ICTNWETACWAMAKSWLGVQLDLELARSQPGRMEQV 320 (938)
Q Consensus 244 ~r~-LWK~~~~C~s~kla~~~~~~YERAIYgaLsGdl~~vL~--vC~SWED~LWAy~nall~~rvd~~L~~~~~~~~~~~ 320 (938)
+++ |||++||++|+ ++++++|||||||+||||++++++ +| ||||+||||||++++++||+||.+.++....
T Consensus 238 ~~r~LWkr~c~~lA~---~~~~~~yERAvY~~LsG~l~s~~~~~~~-sWeD~Lway~n~ll~~~vd~~l~~~~~~~~~-- 311 (460)
T 3iko_C 238 KKHSLWRRTVYSLSQ---QAGLDPYERAIYSYLSGAIPNQEVLQYS-DWESDLHIHLNQILQTEIENYLLENNQVGTD-- 311 (460)
T ss_dssp TTHHHHHHHHHHHHH---CSSSCHHHHHHHHHHHTSCCCHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHHHTTCSCGG--
T ss_pred hhHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCchhhcccCCC-CHHHHHHHHHHHHHHHHHHHHHHHhCCcccc--
Confidence 965 99987776654 889999999999999999999997 78 9999999999999999999999986531110
Q ss_pred cccCcccCCCCCCCCCCCCCCCCCCCCchhcccCChhhHHHHHHHHhcCcCcchhhhhhhhhHHHHHHHHHHhCChhHHH
Q 045469 321 KSFGDEIEGSPGQMNGISQPSVGPESWPVQVLNQQPRDLSALLQKLHSGEMVHEVVTQVCKEQQRQIEMKLMLGNIPHVL 400 (938)
Q Consensus 321 ~s~~~~~~~~~~~~~~~~~~~~p~~~w~~~~l~~~p~sl~~iL~~L~s~~~~~~~v~~Ea~~P~rvIQ~~IIl~~i~~Ll 400 (938)
....+.|+ ++.+++++|++|+++ ++.|+++|||+||++||+|+++.||
T Consensus 312 ----------------~~~~~~P~----------~~~tl~~il~~L~~~------~~~ea~~p~r~iQ~~iIl~~~~~ll 359 (460)
T 3iko_C 312 ----------------ELILPLPS----------HALTVQEVLNRVASR------HPSESEHPIRVLMASVILDSLPSVI 359 (460)
T ss_dssp ----------------GCCSCCCC----------CCCCHHHHHHHHHHH------SHHHHHSTTHHHHHHHHSSCCHHHH
T ss_pred ----------------ccccCCCC----------CccCHHHHHHHHHhc------ChHhhhChHHHHHHHHHHcCHHHHH
Confidence 11223332 356899999999842 3468999999999999999999999
Q ss_pred HHHHHhhcCC---CCCcCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCCcccccccchHHHHHHHHHHHHHhCCCcchHh
Q 045469 401 QLIWSWIAPS---EDDQNVFRPHGDPQMIRFGAHLVLVLRYLLTDELKDPFRKDLMDAGDLIIHMYAMFLFSEHHEELVG 477 (938)
Q Consensus 401 ~~~~~~l~~~---~~~~~~l~~~~~p~lLRflaHLvLfLr~l~~~~~~~~~~e~~~~~~~~II~aYI~~L~~~g~~eLIp 477 (938)
+++..|+.+. .++++. ...+||+|||+|||+||++.+|+... .+ .++++||++||++|+.+|+++|||
T Consensus 360 ~~~~~~L~~~~~~~~~~~~--~~~~~~~LRf~aHl~Lflr~l~~~~~----~~---~~~~~II~~YI~~L~~~~~~eLIp 430 (460)
T 3iko_C 360 HSSVEMLLDVVKGTEASND--IIDKPYLLRIVTHLAICLDIINPGSV----EE---VDKSKLITTYISLLKLQGLYENIP 430 (460)
T ss_dssp HHHHHTCCC------------CTTSHHHHHHHHHHHHHHHHHSTTSS----CH---HHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHhhccCccccc--cccCcchHHHHHHHHHHHHHhCcccc----Ch---HHHHHHHHHHHHHHHHCCCcccHH
Confidence 9999999763 222222 24689999999999999999997311 12 578999999999999999999999
Q ss_pred hhhccCCchhhHHHHHHHhhhhcCchhhHH
Q 045469 478 VYASQLARHRCIDLFVHMMELRLNSSVHVK 507 (938)
Q Consensus 478 lYaS~Lp~~~~ie~ys~~Ls~i~d~s~~~k 507 (938)
+|||+||+++++++||+||.+|+|+++|.|
T Consensus 431 lY~S~L~~~~~~e~Ys~fL~~i~d~~~R~k 460 (460)
T 3iko_C 431 IYATFLNESDCLEACSFILSSLEDPQVRKK 460 (460)
T ss_dssp HHHTTCGGGGGC------------------
T ss_pred HHHccCCHhHHHHHHHHHHhcCCChhhccC
Confidence 999999999999999999999999988864
No 2
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=99.71 E-value=1.5e-17 Score=179.15 Aligned_cols=179 Identities=21% Similarity=0.299 Sum_probs=122.2
Q ss_pred cchhhhhchhhhhhhhhhccccccCCCccchhhhhHHHHHHHHHHHHHHHHHHHHhhhcCcCCCCccchhHHhhhhhhhh
Q 045469 553 TDVAEQHRLQSLQKAMVIQWLCFTPPSTIADVKDVSAKLLLRALIHSNILFREFALISMWRVPAMPIGAHELLSFLAEPL 632 (938)
Q Consensus 553 ~dVse~~r~~D~~li~aieWL~f~p~~~~~~~~~~~~kl~~dAL~~sN~LiR~FLl~~~~kv~al~~~~~~ll~lL~e~~ 632 (938)
++|++. |.++|+|||||+|+|.+ +.+||.++|+|+|+||.+ ||+. +++.+...++...
T Consensus 7 ~~vs~~----D~~lIrslEWL~~~~~q------------~~eal~~~n~l~R~FL~~--gkl~----AAr~l~~rlp~~~ 64 (270)
T 3cqc_A 7 TGTTEE----DRLKIDVIDWLVFDPAQ------------RAEALKQGNAIMRKFLAS--KKHE----AAKEVFVKIPQDS 64 (270)
T ss_dssp -----C----HHHHHHHHHHHHHSGGG------------HHHHHHHHHHHHHHHHHT--TCHH----HHHHHHHHSCTTH
T ss_pred CCCCHH----HHHHHHHHhHHhcChhH------------HHHHHHHHHHHHHHHHHc--CcHH----HHHHHHHHCChHH
Confidence 456664 99999999999999975 569999999999999877 5665 4455555444422
Q ss_pred -hhccC------CCCCCCcchHhhHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCC---------CcCCHHHHH------
Q 045469 633 -KQLSE------NPDTLEDNVSENLKEFQDWSEYYSCDATYRKWLKIELENANVPA---------LELSLEEKQ------ 690 (938)
Q Consensus 633 -~~l~~------~~~~~e~~~~~~i~E~~~y~~yl~~~~~~~~W~k~~~~n~~~~~---------~~l~~ee~~------ 690 (938)
.++.. +.+..+++.+++++||+||+.|++|++.|.+|+++++. +|.+| +.+..|.|+
T Consensus 65 i~~~~~~~~~~~~~~~~~~~~~~ai~E~~~~~~~l~a~~~~~~W~~~~~~-~p~~~~~~~~~~~~e~~~~~~~~~~~~~~ 143 (270)
T 3cqc_A 65 IAEIYNQCEEQGMESPLPAEDDNAIREHLCIRAYLEAHETFNEWFKHMNS-VPQKPALIPQPTFTEKVAHEHKEKKYEMD 143 (270)
T ss_dssp HHHHC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCCCcchhhhhHHHHHHHHHHHHHHHHH
Confidence 11100 11123456888999999999999999999999999774 44333 223333332
Q ss_pred ------HHHHHHHHHHHHHHHHhhccCCCccccCCCCcchhhHHhhHHHhhhhhhcCCCCCcCCCCCchhhhhHhhhhhc
Q 045469 691 ------RAIAAAQETLNMSLILLQRKENPWLVSLEDPIYESVEALYLELHATAILCLPSGECLSPDATMCTALMSALYST 764 (938)
Q Consensus 691 ------~~~~~a~~~l~~~~~ll~~~~~~wl~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (938)
+...+++.|.+++..+|+..++|||++..... ++.+..-.++...+.+|||-. +-.|-++|+.+
T Consensus 144 ~~~W~~~l~~~~~~a~~~l~~vL~f~~~gWL~~~~~d~-~~~~~r~~ql~~iR~~yIPel---------vl~Lh~vl~~a 213 (270)
T 3cqc_A 144 FGIWKGHLDALTADVKEKMYNVLLFVDGGWMVDVREDA-KEDHERTHQMVLLRKLCLPML---------CFLLHTILHST 213 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCTTTCTTCCSCCCS-CCCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCcccc-ccchhHHHHHHHHHHHHHHHH---------HHHHHHHHHHH
Confidence 33466788888999999888889999962211 222556689999999999854 55566666655
No 3
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=95.15 E-value=0.02 Score=68.78 Aligned_cols=105 Identities=16% Similarity=0.219 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHcCCcchhhhcCcCCccCCCC-chHHHhhccCcchhhhhhhcccCCchhHHHHHHHH
Q 045469 175 SLLEDVWTLLRAGRQEEACDLCRSAGQPWRAATLCPFGVIDFSP-SVEALIKNGRSRTLQAIELESGIGHQWRLWKWASY 253 (938)
Q Consensus 175 ~l~k~if~LLRaGrleeA~elC~~~Gq~WRAASL~g~GG~~~~P-~~d~~~~n~~~~~l~~~e~e~~~Gn~r~LWK~~~~ 253 (938)
.+|--||=+||||.+++|.+..++.++.-+..- +.|+ .+..... ++++.+ +.+++... +.-|++
T Consensus 154 p~Wa~IyY~LR~G~~~~A~e~~~~~~~~~~~~d-------~~F~~~l~~~~~-s~~~~L-~~~~~~~l---~~ey~~--- 218 (661)
T 2qx5_A 154 PIWALIFYLLRAGLIKEALQVLVENKANIKKVE-------QSFLTYFKAYAS-SKDHGL-PVEYSTKL---HTEYNQ--- 218 (661)
T ss_dssp EHHHHHHHHHTTTCHHHHHHHHHHTGGGC------------CHHHHHHHC------------------------------
T ss_pred ccHHHHHHHHhcCCHHHHHHHHHHhhhhHhhhh-------HHHHHHHHHHHh-CCCCCC-CHHHHHHH---HHHHHH---
Confidence 389999999999999999999999886544220 0111 1111000 011110 11111110 113432
Q ss_pred hhhHHHh-hhcCChHHHHHHHHHcC-CCc-ccc-cccCCHHHHHHHHHH
Q 045469 254 CTSEKIF-EQRGSKFEAAIYAAQCS-NLK-HVL-PICTNWETACWAMAK 298 (938)
Q Consensus 254 C~s~kla-~~~~~~YERAIYgaLsG-dl~-~vL-~vC~SWED~LWAy~n 298 (938)
++. .++.|+|-+|||.+|++ |+. .-+ .|+.|=||+||.+++
T Consensus 219 ----~~r~~~~~DpyK~AvY~Iig~cD~~~~~~~~v~~siED~LWl~L~ 263 (661)
T 2qx5_A 219 ----HIKSSLDGDPYRLAVYKLIGRCDLSRKNIPAVTLSIEDWLWMHLM 263 (661)
T ss_dssp ------------CHHHHHHHHHHHTCCGGGCCCGGGCCSHHHHHHHHHH
T ss_pred ----HHhCCCCCCHHHHHHHHHHhcccccccchHHHhccHHHHHHHHHH
Confidence 122 23589999999999998 662 334 689999999999996
No 4
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=92.11 E-value=3.2 Score=49.69 Aligned_cols=203 Identities=14% Similarity=0.074 Sum_probs=119.1
Q ss_pred HHHHHHHhcCcHHHHHHHHHHcCCcchhhhcCcCCccCCCCchHHHhhccCcchhhhhhhcccCCchhHHHHHHHHhhhH
Q 045469 178 EDVWTLLRAGRQEEACDLCRSAGQPWRAATLCPFGVIDFSPSVEALIKNGRSRTLQAIELESGIGHQWRLWKWASYCTSE 257 (938)
Q Consensus 178 k~if~LLRaGrleeA~elC~~~Gq~WRAASL~g~GG~~~~P~~d~~~~n~~~~~l~~~e~e~~~Gn~r~LWK~~~~C~s~ 257 (938)
+.+|.+|-+|++++|.++|.+.|++=.|..|.=.||- .+....+ +.++...||. .
T Consensus 491 ~~i~~~L~~~~i~~A~~~a~~~~~~~la~ll~~~~~~--~~~~~~~-----------------~~~Ql~~W~~--~---- 545 (753)
T 3jro_A 491 EQIFLYLLLNDVVRASKLAIESKNGHLSVLISYLGSN--DPRIRDL-----------------AELQLQKWST--G---- 545 (753)
T ss_dssp HHHHHHTTTTCHHHHHHHHHHTTCCHHHHHGGGCSSC--CHHHHHH-----------------HHHHHHHHHT--T----
T ss_pred HHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHHhcCC--CHHHHHH-----------------HHHHHHHHHH--c----
Confidence 5699999999999999999999999999888622221 0211110 1223446873 1
Q ss_pred HHhhhcCChHHHHHHHHHcCCCc----cccccc--CCHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccccCcccCCCC
Q 045469 258 KIFEQRGSKFEAAIYAAQCSNLK----HVLPIC--TNWETACWAMAKSWLGVQLDLELARSQPGRMEQVKSFGDEIEGSP 331 (938)
Q Consensus 258 kla~~~~~~YERAIYgaLsGdl~----~vL~vC--~SWED~LWAy~nall~~rvd~~L~~~~~~~~~~~~s~~~~~~~~~ 331 (938)
+...++.=+.||.+|+|+.- ....+| -+|--.|=+++- | + .
T Consensus 546 ---~~~i~~~~~~iy~llag~~~~~~~~~~~~~~~l~W~~~l~~~lw---------y----~-----------~------ 592 (753)
T 3jro_A 546 ---GCSIDKNISKIYKLLSGSPFEGLFSLKELESEFSWLCLLNLTLC---------Y----G-----------Q------ 592 (753)
T ss_dssp ---TCCCCHHHHHHHHTSSSCCSSSTTCCGGGGTTSCHHHHHHHHHH---------T----S-----------C------
T ss_pred ---CCCCCHHHHHHHHHhCCCccccccchhhccCCCCHHHHHHHHHH---------c----C-----------C------
Confidence 33578999999999999751 122333 468766544441 0 0 0
Q ss_pred CCCCCCCCCCCCCCCCchhcccCChhhHHHHHHHHhcCcCcchhhhhhhhhH-HHHHHHHHHhCChhHHHHHHHHhhcCC
Q 045469 332 GQMNGISQPSVGPESWPVQVLNQQPRDLSALLQKLHSGEMVHEVVTQVCKEQ-QRQIEMKLMLGNIPHVLQLIWSWIAPS 410 (938)
Q Consensus 332 ~~~~~~~~~~~p~~~w~~~~l~~~p~sl~~iL~~L~s~~~~~~~v~~Ea~~P-~rvIQ~~IIl~~i~~Ll~~~~~~l~~~ 410 (938)
+ . ..+++++++.-.... .+ .-.++ ++++|.+-=..+++.+++-...
T Consensus 593 -----------~-~----------~~~~~~~~~~~~~~~--~~----~~~d~~~~ll~l~~~~~~~~~~l~~~~~----- 639 (753)
T 3jro_A 593 -----------I-D----------EYSLESLVQSHLDKF--SL----PYDDPIGVIFQLYAANENTEKLYKEVRQ----- 639 (753)
T ss_dssp -----------T-T----------TSCHHHHHHHHHTTC--CC----CTTCHHHHHHHHHHCSTTHHHHHHHHHT-----
T ss_pred -----------C-C----------CCCHHHHHHHHHhcc--CC----CccCHHHHHHHHhcCCCCHHHhhccccC-----
Confidence 0 0 013455544432210 00 01222 4455554322234444443211
Q ss_pred CCCcCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCCcccccccchHHHHHHHHHHHHHhCCCcchHhhhhccCCchh
Q 045469 411 EDDQNVFRPHGDPQMIRFGAHLVLVLRYLLTDELKDPFRKDLMDAGDLIIHMYAMFLFSEHHEELVGVYASQLARHR 487 (938)
Q Consensus 411 ~~~~~~l~~~~~p~lLRflaHLvLfLr~l~~~~~~~~~~e~~~~~~~~II~aYI~~L~~~g~~eLIplYaS~Lp~~~ 487 (938)
..+|-=-|+-=||+-+|+.+|... +.+ ...+.+...|+..|...|+.+.--|=..+|+++.
T Consensus 640 ---------~~~~ld~~l~w~l~~~l~~~~~~~----~~~---~~~~~l~~~~a~qL~~~g~~~~a~fv~~h~~~~~ 700 (753)
T 3jro_A 640 ---------RTNALDVQFCWYLIQTLRFNGTRV----FSK---ETSDEATFAFAAQLEFAQLHGHSLFVSCFLNDDK 700 (753)
T ss_dssp ---------TCTTSCHHHHHHHHHHTTTTTCSC----CCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHTCSCHH
T ss_pred ---------CCCCCccccHHHHHHHHHhcCCCc----cCh---hhHHHHHHHHHHHHHhCCCchhHHHHhhhCCChH
Confidence 112333488889999999987532 111 4668899999999999999777666666666543
No 5
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=91.91 E-value=0.24 Score=58.20 Aligned_cols=105 Identities=13% Similarity=0.132 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHcCCcchhhhcCcCCccCCCCch-------HHHhhccCcchhhhhhhcccCCchhHH
Q 045469 175 SLLEDVWTLLRAGRQEEACDLCRSAGQPWRAATLCPFGVIDFSPSV-------EALIKNGRSRTLQAIELESGIGHQWRL 247 (938)
Q Consensus 175 ~l~k~if~LLRaGrleeA~elC~~~Gq~WRAASL~g~GG~~~~P~~-------d~~~~n~~~~~l~~~e~e~~~Gn~r~L 247 (938)
.||.++.++|.+|++++|+..-++.+- .-.|. ..-|.. ..+.++- |. . .-..++-
T Consensus 244 ~FW~~v~~LvLRGl~~qA~~~L~~s~~---~~~L~-----~~~~~~~~~i~dli~LL~~y------P~--~--S~~~fr~ 305 (570)
T 3f3f_C 244 YFWKLLNQLVLRGLLSQAIGCIERSDL---LPYLS-----DTCAVSFDAVSDSIELLKQY------PK--D--SSSTFRE 305 (570)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTTTT---THHHH-----HSCHHHHHHHHHHHHHHTTC------CS--S--CHHHHHH
T ss_pred cHHHHHHHHHHcccHHHHHHHHHhccc---chhhc-----ccChHHHHHHHHHHHHHHhC------CC--C--chHHHHH
Confidence 589999999999999999998876653 00010 000111 1111100 00 0 0113467
Q ss_pred HHHHHHhhhHHHhhhcCC------hHHHHHHHHHcCCCcccccccCCHHHHHHHHH
Q 045469 248 WKWASYCTSEKIFEQRGS------KFEAAIYAAQCSNLKHVLPICTNWETACWAMA 297 (938)
Q Consensus 248 WK~~~~C~s~kla~~~~~------~YERAIYgaLsGdl~~vL~vC~SWED~LWAy~ 297 (938)
||..+--+...+++...+ ++=+.||.+|+||-+.++..|++|.+++=+++
T Consensus 306 WK~~~~e~r~~l~~~~~~i~~ei~~~Ledll~Il~Gd~~~Il~~~~tWYEal~all 361 (570)
T 3f3f_C 306 WKNLVLKLSQAFGSSATDISGELRDYIEDFLLVIGGNQRKILQYSRTWYESFCGFL 361 (570)
T ss_dssp HHHHHHHHHHHHHTSCCCSCHHHHHHHHHHHHHHHTCHHHHHHTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchHHHHHHHHHHHHHcCCHHHHHHHcccHHHHHhHhe
Confidence 995332222245444433 67788999999999999999999999887765
No 6
>3bg1_B Nucleoporin NUP145; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Saccharomyces cerevisiae} PDB: 3bg0_B 3iko_B
Probab=91.22 E-value=5.5 Score=45.63 Aligned_cols=204 Identities=13% Similarity=0.049 Sum_probs=117.1
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHcCCcchhhhcCcCCccCCCCchHHHhhccCcchhhhhhhcccCCchhHHHHHHHHhhh
Q 045469 177 LEDVWTLLRAGRQEEACDLCRSAGQPWRAATLCPFGVIDFSPSVEALIKNGRSRTLQAIELESGIGHQWRLWKWASYCTS 256 (938)
Q Consensus 177 ~k~if~LLRaGrleeA~elC~~~Gq~WRAASL~g~GG~~~~P~~d~~~~n~~~~~l~~~e~e~~~Gn~r~LWK~~~~C~s 256 (938)
+..+|.+|-+|++++|.+.|.+.|++=.|..|.=.||- +..- ...+ -.+-..||. .
T Consensus 181 ~e~i~~~L~~~~v~eA~~~Ai~~~d~rLA~Llsq~g~~---~~~r---------~~la-------~~QL~~W~~--~--- 236 (442)
T 3bg1_B 181 IEQIFLYLLLNDVVRASKLAIESKNGHLSVLISYLGSN---DPRI---------RDLA-------ELQLQKWST--G--- 236 (442)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHTSC---CHHH---------HHHH-------HHHHHHTTS--S---
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCcHHHHHHHHhcCC---chHH---------HHHH-------HHHHHHHHH--h---
Confidence 67899999999999999999999999888887522221 1110 0000 112346873 1
Q ss_pred HHHhhhcCChHHHHHHHHHcCCCc-c---cccccC--CHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccccCcccCCC
Q 045469 257 EKIFEQRGSKFEAAIYAAQCSNLK-H---VLPICT--NWETACWAMAKSWLGVQLDLELARSQPGRMEQVKSFGDEIEGS 330 (938)
Q Consensus 257 ~kla~~~~~~YERAIYgaLsGdl~-~---vL~vC~--SWED~LWAy~nall~~rvd~~L~~~~~~~~~~~~s~~~~~~~~ 330 (938)
...+++.=++||.+|+|++- . ...+|. +|--.+=.++ + |+. +
T Consensus 237 ----~~~I~~~~~kiY~LLAG~~~e~~~~~~~i~~~LdW~ralgl~L--W----------------------Y~~----~ 284 (442)
T 3bg1_B 237 ----GCSIDKNISKIYKLLSGSPFEGLFSLKELESEFSWLCLLNLTL--C----------------------YGQ----I 284 (442)
T ss_dssp ----CCCSCHHHHHHHHHHHSCSTTSTTCSGGGGGTSCHHHHHHHHH--H----------------------TCC----C
T ss_pred ----CccCCHHHHHHHHHhcCCcccccccchhcccCCCHHHHHHHHh--h----------------------cCC----C
Confidence 33578899999999999971 1 234453 6875544333 0 000 0
Q ss_pred CCCCCCCCCCCCCCCCCchhcccCChhhHHHHHHHHhcCcCcchhhhhhhhhHHHHHHHHHHhCChhHHHHHHHHhhcCC
Q 045469 331 PGQMNGISQPSVGPESWPVQVLNQQPRDLSALLQKLHSGEMVHEVVTQVCKEQQRQIEMKLMLGNIPHVLQLIWSWIAPS 410 (938)
Q Consensus 331 ~~~~~~~~~~~~p~~~w~~~~l~~~p~sl~~iL~~L~s~~~~~~~v~~Ea~~P~rvIQ~~IIl~~i~~Ll~~~~~~l~~~ 410 (938)
+ ..+|+++++.-.... ..+ . ..--|++++.+--..+++.+++-...
T Consensus 285 -------------~-----------~~si~~av~~f~~~~-~~P-~---~D~~~~LLkLya~~~~le~~L~p~s~----- 330 (442)
T 3bg1_B 285 -------------D-----------EYSLESLVQSHLDKF-SLP-Y---DDPIGVIFQLYAANENTEKLYKEVRQ----- 330 (442)
T ss_dssp -------------S-----------SCCHHHHHHHHHHHS-CCC-T---TCHHHHHHHHHHSCTTHHHHHHHHHT-----
T ss_pred -------------C-----------CCCHHHHHHHHHHhc-cCC-C---CCHHHHHHHHHccCCCHHHHhChhcc-----
Confidence 0 013444444332110 001 0 11223344433222344444432210
Q ss_pred CCCcCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCCcccccccchHHHHHHHHHHHHHhCCCcchHhhhhccCCch
Q 045469 411 EDDQNVFRPHGDPQMIRFGAHLVLVLRYLLTDELKDPFRKDLMDAGDLIIHMYAMFLFSEHHEELVGVYASQLARH 486 (938)
Q Consensus 411 ~~~~~~l~~~~~p~lLRflaHLvLfLr~l~~~~~~~~~~e~~~~~~~~II~aYI~~L~~~g~~eLIplYaS~Lp~~ 486 (938)
..+|-=-|+-=||+-+|+.+|.... + + ...+.+...|+..|...|+.+.--|=..+|+++
T Consensus 331 ---------s~~~lD~rLsW~L~~~L~a~g~~~~-~---~---~~~d~L~~~fA~QLe~~Glw~wAifVllHl~d~ 390 (442)
T 3bg1_B 331 ---------RTNALDVQFCWYLIQTLRFNGTRVF-S---K---ETSDEATFAFAAQLEFAQLHGHSLFVSCFLNDD 390 (442)
T ss_dssp ---------TCCCSCHHHHHHHHHHHHTTSCSCC-C---H---HHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCH
T ss_pred ---------CCCcccchhHHHHHHHHHhCCCccc-C---h---hHHHHHHHHHHHHHHHCCCcHHHHHHHhhCCCh
Confidence 0122223888999999999885321 1 1 467889999999999999977766666677664
No 7
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=83.46 E-value=1.7 Score=49.25 Aligned_cols=210 Identities=11% Similarity=0.056 Sum_probs=118.8
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHcCCcchhhhcCcCCccCCCCchHHHhhccCcchhhhhhhcccCCchhHHH-HHHHHh
Q 045469 176 LLEDVWTLLRAGRQEEACDLCRSAGQPWRAATLCPFGVIDFSPSVEALIKNGRSRTLQAIELESGIGHQWRLW-KWASYC 254 (938)
Q Consensus 176 l~k~if~LLRaGrleeA~elC~~~Gq~WRAASL~g~GG~~~~P~~d~~~~n~~~~~l~~~e~e~~~Gn~r~LW-K~~~~C 254 (938)
.-..|-+.|..|++++|.++|.+.+..-=|+.|.-.|| ..|| +++...
T Consensus 146 ~d~~I~~aLl~Gd~e~AV~~cl~~~r~adAllLA~~gg-------------------------------~el~~~~vq~~ 194 (399)
T 2pm7_A 146 IEQTISKNLVSGNIKSAVKNSLENDLMMEAMVIALDSN-------------------------------NERLKESVKNA 194 (399)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHTTCC-------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHhcC-------------------------------HHHHHHHHHHH
Confidence 34556788999999999999999999888888852121 1288 654322
Q ss_pred hhHHHh-hhcCChHHHHHHHHHcCCCccccccc--CCHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccccCcccCCCC
Q 045469 255 TSEKIF-EQRGSKFEAAIYAAQCSNLKHVLPIC--TNWETACWAMAKSWLGVQLDLELARSQPGRMEQVKSFGDEIEGSP 331 (938)
Q Consensus 255 ~s~kla-~~~~~~YERAIYgaLsGdl~~vL~vC--~SWED~LWAy~nall~~rvd~~L~~~~~~~~~~~~s~~~~~~~~~ 331 (938)
+ ++ +.+.++|=|.||++..||+..+..-| .+|.+.|=+-+ .+.+
T Consensus 195 Y---~~k~~~~~~~~rll~~iv~~n~~d~V~~~~l~~WkE~La~i~-------------t~a~----------------- 241 (399)
T 2pm7_A 195 Y---FAKYGSKSSLSRILYSISKREVDDLVENLDVSQWKFISKAIQ-------------NLYP----------------- 241 (399)
T ss_dssp H---HHHHTTSCHHHHHHHHHHTTCCHHHHHHBCGGGHHHHHHHHH-------------HHCT-----------------
T ss_pred H---HHhcccCchHHHHHHHHHccCHHHHHhcCChhhHHHHHHHHH-------------hcCC-----------------
Confidence 2 22 33457999999999999998877666 48988664433 1110
Q ss_pred CCCCCCCCCCCCCCCCchhcccCChh--hHHHHHHHHhcCcCcchhhhhhhhhHHHHHHHHHHhCChhHHHHHHHHhhcC
Q 045469 332 GQMNGISQPSVGPESWPVQVLNQQPR--DLSALLQKLHSGEMVHEVVTQVCKEQQRQIEMKLMLGNIPHVLQLIWSWIAP 409 (938)
Q Consensus 332 ~~~~~~~~~~~p~~~w~~~~l~~~p~--sl~~iL~~L~s~~~~~~~v~~Ea~~P~rvIQ~~IIl~~i~~Ll~~~~~~l~~ 409 (938)
+. ....+.+.|- ++...+ .+.....-.+|..++++.++.--..-+..
T Consensus 242 ------------------------~e~~ef~~Lc~~LG------~RL~~~-g~~~~A~lCYi~Ag~~dk~v~iW~~~~~~ 290 (399)
T 2pm7_A 242 ------------------------NDIAQRNEMMIKLG------DRMKEN-GHRQDSLTLYLAAGSLDKVASIWLSEFPD 290 (399)
T ss_dssp ------------------------TCHHHHHHHHHHHH------HHHHTT-TCHHHHHHHHHHHTCHHHHHHHHHHSHHH
T ss_pred ------------------------ccHhHHHHHHHHHH------HHHHhC-CChhhhhHHHHhhCCHHHHHHHHHHhcch
Confidence 11 2233344442 112111 11233457889999999987743221110
Q ss_pred CC---CCcCCCCCC-CCCChHHHHHHHHHHHHHhcCCCCCCcccccccchHHHHHHHHHHHHHhCCCcchHhhhhccCCc
Q 045469 410 SE---DDQNVFRPH-GDPQMIRFGAHLVLVLRYLLTDELKDPFRKDLMDAGDLIIHMYAMFLFSEHHEELVGVYASQLAR 485 (938)
Q Consensus 410 ~~---~~~~~l~~~-~~p~lLRflaHLvLfLr~l~~~~~~~~~~e~~~~~~~~II~aYI~~L~~~g~~eLIplYaS~Lp~ 485 (938)
.+ .++. ..+. ..+..|-=+.--+.+|+..-. ...... .......+..|...|...|+.+.-=-|+..+|.
T Consensus 291 ~~~~~~~~~-~s~~~~~~~~Lqe~iEkv~vl~~a~~-~~~~~~----~~~l~~~~~eYA~lLA~qG~l~~A~~yL~~lp~ 364 (399)
T 2pm7_A 291 LEDKLKKDN-KTIYEAHSECMTEFIERFTVFSNFIN-GSSTIN----NEQLIAKFLEFINLTTSTGNFELATEFLNSLPS 364 (399)
T ss_dssp HHHHHHHTT-CCHHHHHHHHHHHHHHHHHHHHTTSC-C---CC----CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHSCT
T ss_pred hhhcccccc-CCcccccHHHHHHHHHHHHHHHHHHh-cCCCcC----cHHHHHHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 00 0000 0000 001122222233444554321 100100 123455678899999999998888888888885
Q ss_pred h
Q 045469 486 H 486 (938)
Q Consensus 486 ~ 486 (938)
+
T Consensus 365 ~ 365 (399)
T 2pm7_A 365 D 365 (399)
T ss_dssp T
T ss_pred C
Confidence 4
No 8
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=82.50 E-value=0.47 Score=50.98 Aligned_cols=77 Identities=21% Similarity=0.276 Sum_probs=60.8
Q ss_pred hHHHHHHHhhhhhcchHHHHHHHHHHHHHHhhCCCCCCccchheeeccCccchhhcccHHHHHHHHhhhhhhheeecccc
Q 045469 854 PATFIVRGLCRRCCLPELILRCMQVSISLVELGNQIENHDELIELVACSESGFLHLFSQQQLQEFLLFEREYAICKMEPE 933 (938)
Q Consensus 854 ~~~~~~~~~~r~~c~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 933 (938)
++..-.=..=|..|+||+|+.=-+ .|..+|.- ..+=+|.-+||+...++...|+..+|++||..=|+.++--|+-+
T Consensus 185 ~~r~~ql~~iR~~yIPelvl~Lh~---vl~~a~~~-~~~~~LA~~VA~e~~~ly~~F~k~rL~Ell~~ia~sSl~ll~~~ 260 (270)
T 3cqc_A 185 HERTHQMVLLRKLCLPMLCFLLHT---ILHSTGQY-QECLQLADMVSSERHKLYLVFSKEELRKLLQKLRESSLMLLDQG 260 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHTTCH-HHHHTHHHHHHCTTTCGGGGSCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHcccccHHHHhhHHHHHHHHHHHHHHHHHHHhCC
Confidence 455555567799999999997666 45667753 44456888899999999999999999999999999888777654
Q ss_pred c
Q 045469 934 E 934 (938)
Q Consensus 934 ~ 934 (938)
.
T Consensus 261 ~ 261 (270)
T 3cqc_A 261 L 261 (270)
T ss_dssp B
T ss_pred C
Confidence 3
No 9
>3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae}
Probab=58.69 E-value=8.6 Score=44.03 Aligned_cols=79 Identities=16% Similarity=0.044 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHcCCcchhhhcCcCCccCCCCchHHHhhccCcchhhhhhhcccCCchhHHHHHHHHh
Q 045469 175 SLLEDVWTLLRAGRQEEACDLCRSAGQPWRAATLCPFGVIDFSPSVEALIKNGRSRTLQAIELESGIGHQWRLWKWASYC 254 (938)
Q Consensus 175 ~l~k~if~LLRaGrleeA~elC~~~Gq~WRAASL~g~GG~~~~P~~d~~~~n~~~~~l~~~e~e~~~Gn~r~LWK~~~~C 254 (938)
.....|-++|..|+.++|.++|.+.+-.--|+.|. .. +. .++|+++...
T Consensus 152 ~~~~~I~~~Ll~G~~e~Av~~al~~~lwa~ALlLA----s~--------------------------~g-~e~~~~V~~~ 200 (441)
T 3mzk_B 152 NCQMRVLAFLQTGNHDEALRLALSKRDYAIALLVG----SL--------------------------MG-KDRWSEVIQK 200 (441)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHH----HT--------------------------SC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCcHHHHHHHH----Hh--------------------------cC-HHHHHHHHHH
Confidence 34667889999999999999999988877777774 10 01 1257765443
Q ss_pred hhHH-Hhh--h---cCChHHHHHHHHHcCCCccccc
Q 045469 255 TSEK-IFE--Q---RGSKFEAAIYAAQCSNLKHVLP 284 (938)
Q Consensus 255 ~s~k-la~--~---~~~~YERAIYgaLsGdl~~vL~ 284 (938)
+..+ ... . ....+=|.+|.+++||.+.+..
T Consensus 201 y~~~~~~~~~~~~~~~~~~Lr~Ly~v~sGn~~~~V~ 236 (441)
T 3mzk_B 201 YLYEGFTAGPNDQKELAHFLLLIFQVFVGNSKMAIK 236 (441)
T ss_dssp HHHCC------CTHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHhhcccCCccccccccHHHHHHHHHcCCHHHHHH
Confidence 3211 100 0 1235778999999999977664
No 10
>4a94_C Carboxypeptidase inhibitor; hydrolase-hydrolase inhibitor complex, CPA4, NVCI, PCI, LCI; 1.70A {Nerita versicolor}
Probab=16.89 E-value=37 Score=26.66 Aligned_cols=14 Identities=57% Similarity=1.194 Sum_probs=12.2
Q ss_pred hcCCCCCc-CCCCCc
Q 045469 739 LCLPSGEC-LSPDAT 752 (938)
Q Consensus 739 ~~~~~~~~-~~~~~~ 752 (938)
-||-.|.| +.||||
T Consensus 8 pcinpgrcplvpdat 22 (53)
T 4a94_C 8 PCINPGRCPLVPDAT 22 (53)
T ss_dssp CCSSCCCCTTSTTCE
T ss_pred cccCCCcCccccCCe
Confidence 38889999 999998
Done!