BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045470
(155 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MQ3|A Chain A, Crystal Structure Of Native Bovine Pdp1c
pdb|3N3C|A Chain A, Crystal Structure Of Native Bovine Pdp1c
Length = 467
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 39/148 (26%)
Query: 23 KFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGLWEHLSNQEAVDIV--------H 74
KF P + P L AEP V+ RL P+D+FL+ A+DGLWE + Q+ V IV H
Sbjct: 312 KFIPPNYYTPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIVGEYLTGMHH 371
Query: 75 NCPRNGVARKLVKAALHEAAKKREM-------------------------------RYSD 103
P K+ +H +R R S
Sbjct: 372 QQPIAVGGYKVTLGQMHGLLTERRAKMSSVFEDQNAATHLIRHAVGNNEFGAVDHERLSK 431
Query: 104 LKKIDRGVRRHFHDDITVIILFLDSYLI 131
+ + + R + DDIT+I++ +S+++
Sbjct: 432 MLSLPEELARMYRDDITIIVVQFNSHVV 459
>pdb|2PNQ|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
pdb|2PNQ|B Chain B, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
Length = 467
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 60/148 (40%), Gaps = 39/148 (26%)
Query: 23 KFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGLWEHLSNQEAVDIV--------H 74
KF P P L AEP V+ RL P+D+FL+ A+DGLWE + Q+ V IV H
Sbjct: 312 KFIPPNYHTPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIVGEYLTGMHH 371
Query: 75 NCPRNGVARKLVKAALHEAAKKREM-------------------------------RYSD 103
P K+ +H +R R S
Sbjct: 372 QQPIAVGGYKVTLGQMHGLLTERRAKMSSVFEDQNAATHLIRHAVGNNEFGAVDHERLSK 431
Query: 104 LKKIDRGVRRHFHDDITVIILFLDSYLI 131
+ + + R + DDIT+I++ +S+++
Sbjct: 432 MLSLPEELARMYRDDITIIVVQFNSHVV 459
>pdb|4DS8|B Chain B, Complex Structure Of Abscisic Acid Receptor
Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+
Length = 343
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 21/72 (29%)
Query: 1 ISRSIGDAYLKKAEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGL 60
+SRSIGD YLK P ++ EP V+ ED+ LI ASDGL
Sbjct: 228 MSRSIGDRYLK---------------------PYVIPEPEVTFMPRSREDECLILASDGL 266
Query: 61 WEHLSNQEAVDI 72
W+ ++NQE +I
Sbjct: 267 WDVMNNQEVCEI 278
>pdb|3UJG|B Chain B, Crystal Structure Of Snrk2.6 In Complex With Hab1
Length = 350
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 21/72 (29%)
Query: 1 ISRSIGDAYLKKAEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGL 60
+SRSIGD YLK P ++ EP V+ ED+ LI ASDGL
Sbjct: 235 MSRSIGDRYLK---------------------PYVIPEPEVTFMPRSREDECLILASDGL 273
Query: 61 WEHLSNQEAVDI 72
W+ ++NQE +I
Sbjct: 274 WDVMNNQEVCEI 285
>pdb|3NMV|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
pdb|3UJK|A Chain A, Crystal Structure Of Protein Phosphatase Abi2
pdb|3UJL|B Chain B, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 324
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 21/72 (29%)
Query: 1 ISRSIGDAYLKKAEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGL 60
+SRSIGD YLK P ++ +P V+ R ED LI ASDGL
Sbjct: 202 MSRSIGDRYLK---------------------PSVIPDPEVTSVRRVKEDDCLILASDGL 240
Query: 61 WEHLSNQEAVDI 72
W+ ++N+E D+
Sbjct: 241 WDVMTNEEVCDL 252
>pdb|3QN1|B Chain B, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In
Complex With The Hab1 Type 2c Phosphatase Catalytic
Domain
pdb|3ZVU|B Chain B, Structure Of The Pyr1 His60pro Mutant In Complex With The
Hab1 Phosphatase And Abscisic Acid
Length = 337
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 21/72 (29%)
Query: 1 ISRSIGDAYLKKAEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGL 60
+SRSIGD YLK P ++ EP V+ ED+ LI ASDGL
Sbjct: 222 MSRSIGDRYLK---------------------PYVIPEPEVTFMPRSREDECLILASDGL 260
Query: 61 WEHLSNQEAVDI 72
W+ ++NQE +I
Sbjct: 261 WDVMNNQEVCEI 272
>pdb|3NMT|B Chain B, Crystal Structure Of Pyrabactin Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Hab1
Length = 341
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 21/72 (29%)
Query: 1 ISRSIGDAYLKKAEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGL 60
+SRSIGD YLK P ++ EP V+ ED+ LI ASDGL
Sbjct: 226 MSRSIGDRYLK---------------------PYVIPEPEVTFMPRSREDECLILASDGL 264
Query: 61 WEHLSNQEAVDI 72
W+ ++NQE +I
Sbjct: 265 WDVMNNQEVCEI 276
>pdb|3RT0|A Chain A, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
pdb|3RT0|B Chain B, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
Length = 340
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 21/72 (29%)
Query: 1 ISRSIGDAYLKKAEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGL 60
+SRSIGD YLK P ++ EP V+ ED+ LI ASDGL
Sbjct: 225 MSRSIGDRYLK---------------------PYVIPEPEVTFMPRSREDECLILASDGL 263
Query: 61 WEHLSNQEAVDI 72
W+ ++NQE +I
Sbjct: 264 WDVMNNQEVCEI 275
>pdb|3KB3|B Chain B, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
With Hab1
Length = 321
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 21/72 (29%)
Query: 1 ISRSIGDAYLKKAEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGL 60
+SRSIGD YLK P ++ EP V+ ED+ LI ASDGL
Sbjct: 211 MSRSIGDRYLK---------------------PYVIPEPEVTFMPRSREDECLILASDGL 249
Query: 61 WEHLSNQEAVDI 72
W+ ++NQE +I
Sbjct: 250 WDVMNNQEVCEI 261
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With
Abi1
Length = 326
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 21/73 (28%)
Query: 1 ISRSIGDAYLKKAEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGL 60
+SRSIGD YLK P ++ +P V+ + ED LI ASDG+
Sbjct: 208 MSRSIGDRYLK---------------------PSIIPDPEVTAVKRVKEDDCLILASDGV 246
Query: 61 WEHLSNQEAVDIV 73
W+ ++++EA ++
Sbjct: 247 WDVMTDEEACEMA 259
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
pdb|3NMN|D Chain D, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
Length = 319
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 21/73 (28%)
Query: 1 ISRSIGDAYLKKAEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGL 60
+SRSIGD YLK P ++ +P V+ + ED LI ASDG+
Sbjct: 196 MSRSIGDRYLK---------------------PSIIPDPEVTAVKRVKEDDCLILASDGV 234
Query: 61 WEHLSNQEAVDIV 73
W+ ++++EA ++
Sbjct: 235 WDVMTDEEACEMA 247
>pdb|3KDJ|B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1
Length = 316
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 21/73 (28%)
Query: 1 ISRSIGDAYLKKAEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGL 60
+SRSIGD YLK P ++ +P V+ + ED LI ASDG+
Sbjct: 193 MSRSIGDRYLK---------------------PSIIPDPEVTAVKRVKEDDCLILASDGV 231
Query: 61 WEHLSNQEAVDIV 73
W+ ++++EA ++
Sbjct: 232 WDVMTDEEACEMA 244
>pdb|2P8E|A Chain A, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
pdb|2P8E|B Chain B, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
Length = 307
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 1 ISRSIGDAYLKKAEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGL 60
+SR++GD Y K + P + PEP IL AE ED+F+I A DG+
Sbjct: 200 VSRALGD-YDYKCVDGKGPT-EQLVSPEPEVYEILRAE----------EDEFIILAXDGI 247
Query: 61 WEHLSNQEAVDIV 73
W+ +SN+E + V
Sbjct: 248 WDVMSNEELCEYV 260
>pdb|2I44|A Chain A, Crystal Structure Of Serine-Threonine Phosphatase 2c From
Toxoplasma Gondii
pdb|2I44|B Chain B, Crystal Structure Of Serine-Threonine Phosphatase 2c From
Toxoplasma Gondii
pdb|2I44|C Chain C, Crystal Structure Of Serine-Threonine Phosphatase 2c From
Toxoplasma Gondii
Length = 324
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 35 LLAEPTVSVQRLYPEDQFLIFASDGLWEHLSNQEAVDIVHNCPRNG--VARKLVKAALHE 92
L +P V V R+ P+ + I A+DGLW+ S +AV+I + G A+ LV+ L E
Sbjct: 243 LSNQPDVRVVRVTPQHRVXILATDGLWDVXSAAQAVEIAXQARQEGRNPAQALVEXTLAE 302
Query: 93 AAKKRE 98
+ +
Sbjct: 303 QQSRNQ 308
>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR PHOSPHATASE
COMPLEXED With Zn2+
Length = 304
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 29 PFHKPILLAEPTVSVQRLYPEDQFLIFASDGLWEHLSNQEAVDIVH 74
P + ++ A P + + PED+F++ A DG+W +++++ V V
Sbjct: 215 PAEEQMISALPDIEKITVGPEDEFMVLACDGIWNFMTSEQVVQFVQ 260
>pdb|3FXJ|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 3 Mm Of Mn2+
pdb|3FXK|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 10 Mm Of Mn2+
pdb|3FXL|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Citrate At 1 Mm Of Mn2+
pdb|3FXM|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Citrate At 10 Mm Of Mn2+
pdb|3FXO|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 1 Mm Of Mn2+
Length = 390
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 38 EPTV-SVQRLYPEDQFLIFASDGLWEHLSNQEAVDIV 73
EP V ++R +DQF+I A DG+W+ + N+E D V
Sbjct: 218 EPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFV 254
>pdb|1A6Q|A Chain A, Crystal Structure Of The Protein SerineTHREONINE
PHOSPHATASE 2C AT 2 A Resolution
Length = 382
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 38 EPTV-SVQRLYPEDQFLIFASDGLWEHLSNQEAVDIV 73
EP V ++R +DQF+I A DG+W+ + N+E D V
Sbjct: 218 EPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFV 254
>pdb|2IQ1|A Chain A, Crystal Structure Of Human Ppm1k
Length = 274
Score = 33.1 bits (74), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 19/76 (25%)
Query: 1 ISRSIGDAYLKKAEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGL 60
++RSIGD LK + EP + +L + +D FL+ +DG+
Sbjct: 175 MTRSIGDLDLKTSGVIAEPETKRIKLH-------------------HADDSFLVLTTDGI 215
Query: 61 WEHLSNQEAVDIVHNC 76
+++QE D V+ C
Sbjct: 216 NFMVNSQEICDFVNQC 231
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase Phosphatase With Mg (Ii) Ions At The
Active Site
Length = 389
Score = 32.3 bits (72), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 19/76 (25%)
Query: 1 ISRSIGDAYLKKAEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGL 60
++RSIGD LK + EP + +L + +D FL+ +DG+
Sbjct: 289 MTRSIGDLDLKTSGVIAEPETKRIKLH-------------------HADDSFLVLTTDGI 329
Query: 61 WEHLSNQEAVDIVHNC 76
+++QE D V+ C
Sbjct: 330 NFMVNSQEICDFVNQC 345
>pdb|2Y8B|A Chain A, Vim-7 With Oxidised. Structural And Computational
Investigations Of Vim-7: Insights Into The Substrate
Specificity Of Vim Metallo-Beta-Lactamases
Length = 265
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 11/70 (15%)
Query: 58 DGLWEHLSNQEAVDIVHNCPRNGV----ARKLVKAALHEAAKKREMRYSDLKK-----ID 108
DG+W H++ Q+ D V++ NG+ A +L+ AK ++++K +
Sbjct: 50 DGVWSHIATQKLGDTVYSS--NGLIVRDADELLLIDTAWGAKNTVALLAEIEKQIGLPVT 107
Query: 109 RGVRRHFHDD 118
R + HFHDD
Sbjct: 108 RSISTHFHDD 117
>pdb|2Y87|A Chain A, Native Vim-7. Structural And Computational Investigations
Of Vim-7: Insights Into The Substrate Specificity Of Vim
Metallo-Beta-Lactamases
pdb|2Y8A|A Chain A, Vim-7 With Oxidised. Structural And Computational
Investigations Of Vim-7: Insights Into The Substrate
Specificity Of Vim Metallo-Beta-Lactamases
Length = 265
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 11/70 (15%)
Query: 58 DGLWEHLSNQEAVDIVHNCPRNGV----ARKLVKAALHEAAKKREMRYSDLKK-----ID 108
DG+W H++ Q+ D V++ NG+ A +L+ AK ++++K +
Sbjct: 50 DGVWSHIATQKLGDTVYSS--NGLIVRDADELLLIDTAWGAKNTVALLAEIEKQIGLPVT 107
Query: 109 RGVRRHFHDD 118
R + HFHDD
Sbjct: 108 RSISTHFHDD 117
>pdb|2YZ3|A Chain A, Crystallographic Investigation Of Inhibition Mode Of The
Vim-2 Metallo-Beta-Lactamase From Pseudomonas Aeruginosa
With Mercaptocarboxylate Inhibitor
pdb|2YZ3|B Chain B, Crystallographic Investigation Of Inhibition Mode Of The
Vim-2 Metallo-Beta-Lactamase From Pseudomonas Aeruginosa
With Mercaptocarboxylate Inhibitor
Length = 266
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Query: 57 SDGLWEHLSNQEAVDIVHNCPRNGV----ARKLVKAALHEAAKKREMRYSDLKK-----I 107
+DG+W H++ Q V+ P NG+ +L+ AK ++++K +
Sbjct: 50 ADGVWSHIATQSFDGAVY--PSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPV 107
Query: 108 DRGVRRHFHDD 118
R V HFHDD
Sbjct: 108 TRAVSTHFHDD 118
>pdb|1KO3|A Chain A, Vim-2, A Zn-Beta-Lactamase From Pseudomonas Aeruginosa
With Cys221 Reduced
Length = 230
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Query: 57 SDGLWEHLSNQEAVDIVHNCPRNGV----ARKLVKAALHEAAKKREMRYSDLKK-----I 107
+DG+W H++ Q V+ P NG+ +L+ AK ++++K +
Sbjct: 19 ADGVWSHIATQSFDGAVY--PSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPV 76
Query: 108 DRGVRRHFHDD 118
R V HFHDD
Sbjct: 77 TRAVSTHFHDD 87
>pdb|1KO2|A Chain A, Vim-2, A Zn-Beta-Lactamase From Pseudomonas Aeruginosa
With An Oxidized Cys (Cysteinesulfonic)
Length = 230
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Query: 57 SDGLWEHLSNQEAVDIVHNCPRNGV----ARKLVKAALHEAAKKREMRYSDLKK-----I 107
+DG+W H++ Q V+ P NG+ +L+ AK ++++K +
Sbjct: 19 ADGVWSHIATQSFDGAVY--PSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPV 76
Query: 108 DRGVRRHFHDD 118
R V HFHDD
Sbjct: 77 TRAVSTHFHDD 87
>pdb|2WHG|A Chain A, Crystal Structure Of The Di-Zinc Metallo-Beta-Lactamase
Vim- 4 From Pseudomonas Aeruginosa
pdb|2WHG|B Chain B, Crystal Structure Of The Di-Zinc Metallo-Beta-Lactamase
Vim- 4 From Pseudomonas Aeruginosa
pdb|2WRS|A Chain A, Crystal Structure Of The Mono-zinc Metallo-beta-lactamase
Vim-4 From Pseudomonas Aeruginosa
pdb|2WRS|B Chain B, Crystal Structure Of The Mono-zinc Metallo-beta-lactamase
Vim-4 From Pseudomonas Aeruginosa
Length = 230
Score = 30.0 bits (66), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Query: 57 SDGLWEHLSNQEAVDIVHNCPRNGV----ARKLVKAALHEAAKKREMRYSDLKK-----I 107
+DG+W H++ Q V+ P NG+ +L+ AK ++++K +
Sbjct: 19 ADGVWSHIATQSFDGAVY--PSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPV 76
Query: 108 DRGVRRHFHDD 118
R V HFHDD
Sbjct: 77 TRAVSTHFHDD 87
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 45 RLYPEDQFLIFASDGLWEHLSNQEAVDIVHNCPRN 79
L PE + L + E+LS Q+ DI++N P N
Sbjct: 141 ELPPETKVLDTKNQSFIENLSTQDTSDILNNYPEN 175
>pdb|1YAA|A Chain A, Aspartate Aminotransferase From Saccharomyces Cerevisiae
Cytoplasm
pdb|1YAA|B Chain B, Aspartate Aminotransferase From Saccharomyces Cerevisiae
Cytoplasm
pdb|1YAA|C Chain C, Aspartate Aminotransferase From Saccharomyces Cerevisiae
Cytoplasm
pdb|1YAA|D Chain D, Aspartate Aminotransferase From Saccharomyces Cerevisiae
Cytoplasm
Length = 412
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 20 LLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGLWEHLSNQ 67
LL L E +HK ++ ++ R D + + G W+H+ NQ
Sbjct: 309 LLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQ 356
>pdb|3QDE|A Chain A, The Structure Of Cellobiose Phosphorylase From Clostridium
Thermocellum In Complex With Phosphate
pdb|3QDE|B Chain B, The Structure Of Cellobiose Phosphorylase From Clostridium
Thermocellum In Complex With Phosphate
Length = 811
Score = 26.6 bits (57), Expect = 6.8, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 65 SNQEAVDIVHNCPRNGVARKLVKAALHEAAKKREMRYSDL-KKIDRGVRRHFHDDITVII 123
SNQ+ + VH P R L AA +Y L KK + + +F+DD +I
Sbjct: 362 SNQDLLGFVHQIPERARERLLDLAATQLEDGSAYHQYQPLTKKGNNEIGSNFNDDPLWLI 421
Query: 124 LFLDSYL 130
L +Y+
Sbjct: 422 LATAAYI 428
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,678,356
Number of Sequences: 62578
Number of extensions: 174603
Number of successful extensions: 448
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 409
Number of HSP's gapped (non-prelim): 30
length of query: 155
length of database: 14,973,337
effective HSP length: 91
effective length of query: 64
effective length of database: 9,278,739
effective search space: 593839296
effective search space used: 593839296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)