Query 045470
Match_columns 155
No_of_seqs 108 out of 1094
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 13:35:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045470.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045470hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0700 Protein phosphatase 2C 99.9 2.2E-27 4.8E-32 197.6 8.0 103 1-103 281-388 (390)
2 KOG0698 Serine/threonine prote 99.9 1.5E-21 3.3E-26 161.9 8.8 94 1-135 214-312 (330)
3 PLN03145 Protein phosphatase 2 99.8 1.4E-20 3E-25 158.1 10.6 94 1-129 234-332 (365)
4 KOG0697 Protein phosphatase 1B 99.8 2.6E-20 5.7E-25 149.6 8.5 98 1-131 193-295 (379)
5 PTZ00224 protein phosphatase 2 99.8 2.3E-19 5E-24 151.4 10.2 95 1-129 173-273 (381)
6 PF00481 PP2C: Protein phospha 99.8 2.2E-19 4.8E-24 143.1 2.3 74 1-91 169-247 (254)
7 KOG0699 Serine/threonine prote 99.7 2.6E-18 5.7E-23 142.3 3.8 108 1-135 399-511 (542)
8 COG0631 PTC1 Serine/threonine 99.6 7.1E-16 1.5E-20 124.3 9.3 72 37-130 183-255 (262)
9 KOG1323 Serine/threonine phosp 99.5 2.1E-14 4.5E-19 118.3 9.0 109 1-129 367-489 (493)
10 cd00143 PP2Cc Serine/threonine 99.5 2.5E-14 5.3E-19 111.9 8.6 71 34-126 179-254 (254)
11 smart00332 PP2Cc Serine/threon 99.5 4.7E-14 1E-18 110.9 8.0 70 33-124 181-255 (255)
12 PRK14559 putative protein seri 99.4 1.1E-12 2.4E-17 117.1 9.9 72 37-130 561-638 (645)
13 KOG0618 Serine/threonine phosp 99.1 7.6E-11 1.6E-15 107.4 7.1 77 32-129 697-774 (1081)
14 KOG1379 Serine/threonine prote 99.0 1.1E-09 2.3E-14 89.8 7.4 80 40-125 237-329 (330)
15 TIGR02865 spore_II_E stage II 98.1 8.8E-06 1.9E-10 74.6 7.9 70 38-126 686-763 (764)
16 PF07228 SpoIIE: Stage II spor 98.0 3.2E-05 7E-10 58.3 7.7 71 37-126 112-192 (193)
17 smart00331 PP2C_SIG Sigma fact 97.6 0.00019 4.1E-09 54.3 6.2 52 37-89 137-191 (193)
18 COG2208 RsbU Serine phosphatas 96.8 0.007 1.5E-07 50.8 8.2 72 38-127 285-366 (367)
19 PF13672 PP2C_2: Protein phosp 96.2 0.0037 8.1E-08 47.9 2.6 36 40-76 158-194 (212)
20 PF09436 DUF2016: Domain of un 55.9 7.2 0.00016 25.6 1.3 26 45-70 22-47 (72)
21 PRK06369 nac nascent polypepti 37.9 1.4E+02 0.0029 21.4 5.6 44 32-75 36-86 (115)
22 PF14014 DUF4230: Protein of u 30.0 2.1E+02 0.0045 20.5 6.4 42 34-75 73-114 (157)
23 TIGR03735 PRTRC_A PRTRC system 23.4 47 0.001 25.8 1.3 37 37-73 12-49 (192)
24 PRK05457 heat shock protein Ht 22.9 1.1E+02 0.0024 24.9 3.6 25 52-76 117-141 (284)
25 COG2168 DsrH Uncharacterized c 21.6 88 0.0019 21.6 2.2 36 41-77 17-52 (96)
26 COG2144 Selenophosphate synthe 21.0 83 0.0018 26.4 2.4 28 40-69 45-72 (324)
27 COG3484 Predicted proteasome-t 20.0 1.1E+02 0.0023 24.4 2.6 28 48-77 40-67 (255)
No 1
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=99.94 E-value=2.2e-27 Score=197.56 Aligned_cols=103 Identities=56% Similarity=0.883 Sum_probs=98.3
Q ss_pred CcccccchhccccccCCCCCCCCCCCCCCCCCCceeccceEEEEEcCCCCeEEEEeeCCCCccCCHHHHHHHHHc-----
Q 045470 1 ISRSIGDAYLKKAEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGLWEHLSNQEAVDIVHN----- 75 (155)
Q Consensus 1 vSRAlGD~~~K~~~~~~~~~~~~~~~~~~~~~~~v~a~Pdv~~~~l~~~d~flILaSDGLwd~l~~~ei~~~i~~----- 75 (155)
+||||||..||++.+++++++++|+.+.++++||++|+|+|++++|+++|+|||||||||||+|++||++.+|..
T Consensus 281 vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i~~HrL~p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~ 360 (390)
T KOG0700|consen 281 VSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSITHHKLTPNDKFLILASDGLWEYLSNEEAVSLVHEFISGK 360 (390)
T ss_pred eeeeccceeecchhhccchhHhhcCCCCCCCCCceeccceEEEEEcCCCCeEEEEeccchhhhcChHHHHHHHHHhhccC
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcchHHHHHHHHHHHHHHHhhhhhhhc
Q 045470 76 CPRNGVARKLVKAALHEAAKKREMRYSD 103 (155)
Q Consensus 76 ~~~~~~a~~L~~~a~~~~a~~~~~~~~~ 103 (155)
.+++++|++|++.|+.++++++.+++.+
T Consensus 361 ~pd~~~A~hLIr~aL~~aakk~~~r~s~ 388 (390)
T KOG0700|consen 361 FPDGNPATHLIRHALGRAAKKRGMRLSD 388 (390)
T ss_pred CCCCCHHHHHHHHHHhhhhhhccccHhh
Confidence 7788999999999999999987777654
No 2
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.85 E-value=1.5e-21 Score=161.90 Aligned_cols=94 Identities=43% Similarity=0.617 Sum_probs=77.8
Q ss_pred CcccccchhccccccCCCCCCCCCCCCCCCCCCceeccceEEEEEcCCCCeEEEEeeCCCCccCCHHHHHHHHHcCC---
Q 045470 1 ISRSIGDAYLKKAEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGLWEHLSNQEAVDIVHNCP--- 77 (155)
Q Consensus 1 vSRAlGD~~~K~~~~~~~~~~~~~~~~~~~~~~~v~a~Pdv~~~~l~~~d~flILaSDGLwd~l~~~ei~~~i~~~~--- 77 (155)
|||||||+.+|. ++|+++||+...++.+.|+|||||||||||+|++||++++|+...
T Consensus 214 vsRa~GD~~~k~--------------------~~v~a~Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~~~ 273 (330)
T KOG0698|consen 214 VSRAFGDVELKS--------------------QGVIAEPEIQQVKINSDDEFLILASDGIWDVVSNQEAVDLVRDELASI 273 (330)
T ss_pred EeeecCCHHhcC--------------------CcEecCCceEEEEcCCCCcEEEEeCCchhcccChHHHHHHHHHHhhcc
Confidence 699999999996 349999999999999999999999999999999999999999853
Q ss_pred -c-chHHHHHHHHHHHHHHHhhhhhhhccccccccccCccCCceEEEEEEeCCcccccCC
Q 045470 78 -R-NGVARKLVKAALHEAAKKREMRYSDLKKIDRGVRRHFHDDITVIILFLDSYLISRSS 135 (155)
Q Consensus 78 -~-~~~a~~L~~~a~~~~a~~~~~~~~~~~~~~~~~~~g~~DNiTvivv~l~~~~~~~~~ 135 (155)
. ..++..|...++ .+++.||||||||.|........+
T Consensus 274 ~~~~~a~~~l~~~a~---------------------~~~s~DnitvvvV~l~~~~~~~~~ 312 (330)
T KOG0698|consen 274 SSPLAAAKLLATEAL---------------------SRGSKDNITVVVVRLKSSPKSPSS 312 (330)
T ss_pred ccHHHHHHHHHHHHh---------------------hcCCCCCeEEEEEEecCccccccC
Confidence 2 334555555554 478899999999999886543333
No 3
>PLN03145 Protein phosphatase 2c; Provisional
Probab=99.84 E-value=1.4e-20 Score=158.08 Aligned_cols=94 Identities=30% Similarity=0.490 Sum_probs=76.6
Q ss_pred CcccccchhccccccCCCCCCCCCCCCCCCCCCceeccceEEEEEcCCCCeEEEEeeCCCCccCCHHHHHHHHHcC----
Q 045470 1 ISRSIGDAYLKKAEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGLWEHLSNQEAVDIVHNC---- 76 (155)
Q Consensus 1 vSRAlGD~~~K~~~~~~~~~~~~~~~~~~~~~~~v~a~Pdv~~~~l~~~d~flILaSDGLwd~l~~~ei~~~i~~~---- 76 (155)
|||||||+.+|.... ...+.++++||+..++++++|+|||||||||||+|+++++++++...
T Consensus 234 vTRalGD~~~k~~k~--------------~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdvls~ee~v~~i~~~l~~~ 299 (365)
T PLN03145 234 VARALGDWHMEGMKG--------------SDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEH 299 (365)
T ss_pred ccccccccccccccc--------------ccCCCcceEEEEEEEECCCCCEEEEEeCCccccCcCHHHHHHHHHHHHhcC
Confidence 699999999884320 11123789999999999999999999999999999999998777532
Q ss_pred -CcchHHHHHHHHHHHHHHHhhhhhhhccccccccccCccCCceEEEEEEeCCc
Q 045470 77 -PRNGVARKLVKAALHEAAKKREMRYSDLKKIDRGVRRHFHDDITVIILFLDSY 129 (155)
Q Consensus 77 -~~~~~a~~L~~~a~~~~a~~~~~~~~~~~~~~~~~~~g~~DNiTvivv~l~~~ 129 (155)
..+.+++.|++.|+. +++.||||||||+|+..
T Consensus 300 ~~p~~aa~~Lv~~Al~---------------------rgs~DNITvIVV~l~~~ 332 (365)
T PLN03145 300 NDPVMCSKELVDEALK---------------------RKSGDNLAVVVVCFQSQ 332 (365)
T ss_pred CCHHHHHHHHHHHHHh---------------------CCCCCCEEEEEEEeecC
Confidence 235678888888873 67899999999999874
No 4
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=99.82 E-value=2.6e-20 Score=149.59 Aligned_cols=98 Identities=23% Similarity=0.480 Sum_probs=83.0
Q ss_pred CcccccchhccccccCCCCCCCCCCCCCCCCCCceeccceEEEEEcCCCCeEEEEeeCCCCccCCHHHHHHHHHcCCc--
Q 045470 1 ISRSIGDAYLKKAEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGLWEHLSNQEAVDIVHNCPR-- 78 (155)
Q Consensus 1 vSRAlGD~~~K~~~~~~~~~~~~~~~~~~~~~~~v~a~Pdv~~~~l~~~d~flILaSDGLwd~l~~~ei~~~i~~~~~-- 78 (155)
|||||||+.+|... .-.++.+.|+++|||....-...|+|+||||||+||+|+++|+...++.+..
T Consensus 193 VSRAlGDydyK~v~------------~kgp~eQlVSPEPev~~~~R~eedeFivlACDGIwDVMtneelcefv~sRl~Vt 260 (379)
T KOG0697|consen 193 VSRALGDYDYKNVP------------GKGPTEQLVSPEPEVYIIERSEEDEFIVLACDGIWDVMTNEELCEFVKSRLEVT 260 (379)
T ss_pred eehhccCcccccCC------------CCCchhcccCCCCceEEeeccccCcEEEEEccchhhhcccHHHHHHHHhhheec
Confidence 79999999999754 2246678899999999999999888999999999999999999999988643
Q ss_pred ---chHHHHHHHHHHHHHHHhhhhhhhccccccccccCccCCceEEEEEEeCCccc
Q 045470 79 ---NGVARKLVKAALHEAAKKREMRYSDLKKIDRGVRRHFHDDITVIILFLDSYLI 131 (155)
Q Consensus 79 ---~~~a~~L~~~a~~~~a~~~~~~~~~~~~~~~~~~~g~~DNiTvivv~l~~~~~ 131 (155)
...+...++.++. +|++||+|+++|-|...+.
T Consensus 261 ~dL~~vcn~VvDtCLh---------------------KGSRDNMsivlvcfp~APk 295 (379)
T KOG0697|consen 261 SDLEEVCNDVVDTCLH---------------------KGSRDNMSIVLVCFPGAPK 295 (379)
T ss_pred ccHHHHHHHHHHHHHh---------------------ccCccCceEEEEecCCCCC
Confidence 4567777777764 6889999999999976543
No 5
>PTZ00224 protein phosphatase 2C; Provisional
Probab=99.80 E-value=2.3e-19 Score=151.36 Aligned_cols=95 Identities=29% Similarity=0.449 Sum_probs=78.7
Q ss_pred CcccccchhccccccCCCCCCCCCCCCCCCCCCceeccceEEEEEcCCCCeEEEEeeCCCCc-cCCHHHHHHHHHcC---
Q 045470 1 ISRSIGDAYLKKAEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGLWE-HLSNQEAVDIVHNC--- 76 (155)
Q Consensus 1 vSRAlGD~~~K~~~~~~~~~~~~~~~~~~~~~~~v~a~Pdv~~~~l~~~d~flILaSDGLwd-~l~~~ei~~~i~~~--- 76 (155)
|||||||..+|.++. .++..+.|+++||+..+++.++| ||||||||||| +++++|+++++...
T Consensus 173 vTRalGd~~~K~~~~------------~~~~~~~v~~~Pdi~~~~l~~~D-~llLaSDGL~d~~ls~eEi~~iv~~~l~~ 239 (381)
T PTZ00224 173 VSRAFGDRSFKVKGT------------GDYLEQKVIAVPDVTHLTCQSND-FIILACDGVFEGNFSNEEVVAFVKEQLET 239 (381)
T ss_pred eecccCCcccccccc------------cccccCcceeeeEEEEEECCCCC-EEEEECCCcCcCccCHHHHHHHHHHHHhc
Confidence 699999999997642 12234568999999999999877 99999999999 89999999999742
Q ss_pred --CcchHHHHHHHHHHHHHHHhhhhhhhccccccccccCccCCceEEEEEEeCCc
Q 045470 77 --PRNGVARKLVKAALHEAAKKREMRYSDLKKIDRGVRRHFHDDITVIILFLDSY 129 (155)
Q Consensus 77 --~~~~~a~~L~~~a~~~~a~~~~~~~~~~~~~~~~~~~g~~DNiTvivv~l~~~ 129 (155)
..+.+++.|++.|+. +|+.||||||||++...
T Consensus 240 ~~~~~~aA~~Lv~~A~~---------------------rGs~DNITvIvV~~~~~ 273 (381)
T PTZ00224 240 CDDLAVVAGRVCDEAIR---------------------RGSKDNISCLIVQLKDG 273 (381)
T ss_pred CCCHHHHHHHHHHHHHh---------------------cCCCCCEEEEEEEeeCC
Confidence 235688899998874 68899999999999864
No 6
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=99.75 E-value=2.2e-19 Score=143.08 Aligned_cols=74 Identities=49% Similarity=0.765 Sum_probs=59.5
Q ss_pred CcccccchhccccccCCCCCCCCCCCCCCCCCCceeccceEEEEEcCCCCeEEEEeeCCCCccCCHHHHHHHHHcCCc--
Q 045470 1 ISRSIGDAYLKKAEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGLWEHLSNQEAVDIVHNCPR-- 78 (155)
Q Consensus 1 vSRAlGD~~~K~~~~~~~~~~~~~~~~~~~~~~~v~a~Pdv~~~~l~~~d~flILaSDGLwd~l~~~ei~~~i~~~~~-- 78 (155)
+||||||+.+|.++ +++|+++|++..+++.++|+|||||||||||+|+++|+++++.....
T Consensus 169 ~sRalGd~~~k~~~-----------------~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~l~~~ei~~~v~~~~~~~ 231 (254)
T PF00481_consen 169 VSRALGDFDLKPPG-----------------KPGVIAEPDISEVDLTPDDEFLVLASDGLWDVLSNEEIVDIVRESLNSG 231 (254)
T ss_dssp SSB-EE-GGGTTCT-----------------SSSSB---EEEEEEEBTTEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccc-----------------cceeeeecccccccccccceEEEEEcccccccCCHHHHHHHHHHHHhcC
Confidence 69999999999632 35699999999999999988999999999999999999999987644
Q ss_pred ---chHHHHHHHHHHH
Q 045470 79 ---NGVARKLVKAALH 91 (155)
Q Consensus 79 ---~~~a~~L~~~a~~ 91 (155)
+.+|+.|+..|+.
T Consensus 232 ~~~~~~a~~L~~~A~~ 247 (254)
T PF00481_consen 232 RSPQEAAEKLVDEAIA 247 (254)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHh
Confidence 5688899888884
No 7
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.72 E-value=2.6e-18 Score=142.35 Aligned_cols=108 Identities=30% Similarity=0.471 Sum_probs=85.4
Q ss_pred CcccccchhccccccCCCCCCCCCCCCCCCCCCceeccceEEEEEcCCCCeEEEEeeCCCCccCCHHHHHHHHHcCCc--
Q 045470 1 ISRSIGDAYLKKAEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYPEDQFLIFASDGLWEHLSNQEAVDIVHNCPR-- 78 (155)
Q Consensus 1 vSRAlGD~~~K~~~~~~~~~~~~~~~~~~~~~~~v~a~Pdv~~~~l~~~d~flILaSDGLwd~l~~~ei~~~i~~~~~-- 78 (155)
+||||||+.||+... .|+..+.|++-|||....|++.|+|+|+||||+|++|+++|++++|+....
T Consensus 399 LSRA~GDHaYK~N~~------------Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n 466 (542)
T KOG0699|consen 399 LSRAFGDHAYKKNQE------------LPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKN 466 (542)
T ss_pred hhhhhhhhhhhcccC------------CChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcC
Confidence 589999999998642 356778899999999999999999999999999999999999999986533
Q ss_pred ---chHHHHHHHHHHHHHHHhhhhhhhccccccccccCccCCceEEEEEEeCCcccccCC
Q 045470 79 ---NGVARKLVKAALHEAAKKREMRYSDLKKIDRGVRRHFHDDITVIILFLDSYLISRSS 135 (155)
Q Consensus 79 ---~~~a~~L~~~a~~~~a~~~~~~~~~~~~~~~~~~~g~~DNiTvivv~l~~~~~~~~~ 135 (155)
...+..|+++++.- +.. -..-++||+|||++.|+.+..-.+|
T Consensus 467 ~~ls~iceeL~D~CLAp----------~T~-----GDGTGCDNMT~ii~~Fkrk~~elqp 511 (542)
T KOG0699|consen 467 SSLSEICEELCDACLAP----------STD-----GDGTGCDNMTVIITTFKRKSKELQP 511 (542)
T ss_pred chHHHHHHHHHHhhcCC----------CCC-----CCCcCCCcceEEEEEeccchhhcCC
Confidence 34677777776631 000 0234589999999999976554444
No 8
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.64 E-value=7.1e-16 Score=124.32 Aligned_cols=72 Identities=39% Similarity=0.596 Sum_probs=64.9
Q ss_pred ccceEEEEEcCCCCeEEEEeeCCCCccCCHHHHHHHHHc-CCcchHHHHHHHHHHHHHHHhhhhhhhccccccccccCcc
Q 045470 37 AEPTVSVQRLYPEDQFLIFASDGLWEHLSNQEAVDIVHN-CPRNGVARKLVKAALHEAAKKREMRYSDLKKIDRGVRRHF 115 (155)
Q Consensus 37 a~Pdv~~~~l~~~d~flILaSDGLwd~l~~~ei~~~i~~-~~~~~~a~~L~~~a~~~~a~~~~~~~~~~~~~~~~~~~g~ 115 (155)
.+|++..+++.++| |||||||||||.++++++++++.. ...+.++.+|++.|.. +++
T Consensus 183 ~~p~~~~~~~~~~d-~llL~SDGl~d~v~~~~i~~il~~~~~~~~~~~~li~~a~~---------------------~g~ 240 (262)
T COG0631 183 LEPDITELELEPGD-FLLLCSDGLWDVVSDDEIVDILKNSETPQEAADKLIELALE---------------------GGG 240 (262)
T ss_pred cceeEEEEEcCCCC-EEEEECCCCccCcCHHHHHHHHhcCCCHHHHHHHHHHHHHh---------------------cCC
Confidence 69999999999995 999999999999999999999995 5567899999999974 678
Q ss_pred CCceEEEEEEeCCcc
Q 045470 116 HDDITVIILFLDSYL 130 (155)
Q Consensus 116 ~DNiTvivv~l~~~~ 130 (155)
.||+|+++|.+....
T Consensus 241 ~DNiT~ilv~~~~~~ 255 (262)
T COG0631 241 PDNITVVLVRLNGEG 255 (262)
T ss_pred CCceEEEEEEeeccc
Confidence 999999999998754
No 9
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.55 E-value=2.1e-14 Score=118.33 Aligned_cols=109 Identities=34% Similarity=0.452 Sum_probs=80.6
Q ss_pred CcccccchhccccccCCCCCCCCCCCCCCCCCCceeccceEEEEEcCC----CCeEEEEeeCCCCccCCHHHHHHHHHcC
Q 045470 1 ISRSIGDAYLKKAEFNREPLLPKFRLPEPFHKPILLAEPTVSVQRLYP----EDQFLIFASDGLWEHLSNQEAVDIVHNC 76 (155)
Q Consensus 1 vSRAlGD~~~K~~~~~~~~~~~~~~~~~~~~~~~v~a~Pdv~~~~l~~----~d~flILaSDGLwd~l~~~ei~~~i~~~ 76 (155)
|||.|||+.+|... .+..-+|++++.|+|.+..+.+ .|+++|||||||||+++++|++.+++..
T Consensus 367 VsRGlGDH~Lkv~d------------snl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~ 434 (493)
T KOG1323|consen 367 VSRGLGDHHLKVVD------------SNLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSF 434 (493)
T ss_pred eccccCcceeeeec------------CCcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHh
Confidence 69999999999754 2345578999999999999984 4669999999999999999999999874
Q ss_pred Cc----------chHHHHHHHHHHHHHHHhhhhhhhccccccccccCccCCceEEEEEEeCCc
Q 045470 77 PR----------NGVARKLVKAALHEAAKKREMRYSDLKKIDRGVRRHFHDDITVIILFLDSY 129 (155)
Q Consensus 77 ~~----------~~~a~~L~~~a~~~~a~~~~~~~~~~~~~~~~~~~g~~DNiTvivv~l~~~ 129 (155)
.. -.+++.|+..|.... .+..+.++-. +-++.|||||.||.+..-
T Consensus 435 L~~~dp~Dp~RYt~aaqdlva~arg~~-------k~rgWr~~n~-~lgSgDDIsVfVIPL~~~ 489 (493)
T KOG1323|consen 435 LPSTDPADPSRYTQAAQDLVAAARGQQ-------KDRGWRMNNG-GLGSGDDISVFVIPLKYC 489 (493)
T ss_pred cCCCCCCChhHHHHHHHHHHHHhcCcc-------CCCceeccCC-CcCCCCceEEEEEeccCC
Confidence 32 125666665554321 1222333322 457789999999998763
No 10
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.54 E-value=2.5e-14 Score=111.93 Aligned_cols=71 Identities=54% Similarity=0.738 Sum_probs=60.5
Q ss_pred ceeccceEEEEEc-CCCCeEEEEeeCCCCccCCHHHHHHHHHcCC----cchHHHHHHHHHHHHHHHhhhhhhhcccccc
Q 045470 34 ILLAEPTVSVQRL-YPEDQFLIFASDGLWEHLSNQEAVDIVHNCP----RNGVARKLVKAALHEAAKKREMRYSDLKKID 108 (155)
Q Consensus 34 ~v~a~Pdv~~~~l-~~~d~flILaSDGLwd~l~~~ei~~~i~~~~----~~~~a~~L~~~a~~~~a~~~~~~~~~~~~~~ 108 (155)
.+.++|++..+++ .++| +|+||||||||.++.+++.+++.... .++.++.|++.+..
T Consensus 179 ~~~~~~~~~~~~l~~~~d-~ill~SDG~~~~l~~~~i~~~~~~~~~~~~~~~~a~~l~~~a~~----------------- 240 (254)
T cd00143 179 GVSAEPDVTVVKLTEDDD-FLILASDGLWDVLSNQEAVDIVRSELAKEDLQEAAQELVDLALR----------------- 240 (254)
T ss_pred CEEcCCeEEEEEeCCCCc-EEEEECCCCeeccChHHHHHHHHHHhcccCHHHHHHHHHHHHHh-----------------
Confidence 4788999999999 5555 99999999999999999999998764 46788888888864
Q ss_pred ccccCccCCceEEEEEEe
Q 045470 109 RGVRRHFHDDITVIILFL 126 (155)
Q Consensus 109 ~~~~~g~~DNiTvivv~l 126 (155)
+++.||+|++++++
T Consensus 241 ----~~~~Dn~t~i~~~~ 254 (254)
T cd00143 241 ----RGSHDNITVVVVRL 254 (254)
T ss_pred ----CCCCCCEEEEEEeC
Confidence 45789999999975
No 11
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.51 E-value=4.7e-14 Score=110.88 Aligned_cols=70 Identities=51% Similarity=0.776 Sum_probs=58.5
Q ss_pred CceeccceEEEEEc-CCCCeEEEEeeCCCCccCCHHHHHHHHHcCC----cchHHHHHHHHHHHHHHHhhhhhhhccccc
Q 045470 33 PILLAEPTVSVQRL-YPEDQFLIFASDGLWEHLSNQEAVDIVHNCP----RNGVARKLVKAALHEAAKKREMRYSDLKKI 107 (155)
Q Consensus 33 ~~v~a~Pdv~~~~l-~~~d~flILaSDGLwd~l~~~ei~~~i~~~~----~~~~a~~L~~~a~~~~a~~~~~~~~~~~~~ 107 (155)
+.++++|++...++ .++| +||||||||||+++++++.+++.... ...+++.+++.|..
T Consensus 181 ~~i~~~p~~~~~~~~~~~d-~ill~SDGv~~~l~~~~i~~~~~~~~~~~~~~~~~~~l~~~a~~---------------- 243 (255)
T smart00332 181 PYVSAEPDVTVVELTEKDD-FLILASDGLWDVLSNQEVVDIVRKHLSKSDPEEAAKRLIDLALA---------------- 243 (255)
T ss_pred CCeEeeeEEEEEEecCCCc-EEEEECCccccCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH----------------
Confidence 56899999999997 5555 99999999999999999999998754 45678888777763
Q ss_pred cccccCccCCceEEEEE
Q 045470 108 DRGVRRHFHDDITVIIL 124 (155)
Q Consensus 108 ~~~~~~g~~DNiTvivv 124 (155)
++..||+|++||
T Consensus 244 -----~~~~Dn~T~ivv 255 (255)
T smart00332 244 -----RGSKDNITVIVV 255 (255)
T ss_pred -----cCCCCCeEEEEC
Confidence 467899999985
No 12
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=99.41 E-value=1.1e-12 Score=117.09 Aligned_cols=72 Identities=22% Similarity=0.342 Sum_probs=56.4
Q ss_pred ccceEEEEEcCCCCeEEEEeeCCCCc--cCCH---HHHHHHHHcCC-cchHHHHHHHHHHHHHHHhhhhhhhcccccccc
Q 045470 37 AEPTVSVQRLYPEDQFLIFASDGLWE--HLSN---QEAVDIVHNCP-RNGVARKLVKAALHEAAKKREMRYSDLKKIDRG 110 (155)
Q Consensus 37 a~Pdv~~~~l~~~d~flILaSDGLwd--~l~~---~ei~~~i~~~~-~~~~a~~L~~~a~~~~a~~~~~~~~~~~~~~~~ 110 (155)
.+|++..+.+.++| +|||||||||| .+.+ +++..++.... .++++++|++.|+.
T Consensus 561 l~Pdi~~~~L~~gD-~lLLCSDGL~D~~~ve~~~~~~l~~il~~~~~l~~aa~~Li~~Al~------------------- 620 (645)
T PRK14559 561 IQPDIQFLEIEEDT-LLLLCSDGLSDNDLLETHWQTHLLPLLSSSANLDQGLNKLIDLANQ------------------- 620 (645)
T ss_pred ccceEEEEEcCCCC-EEEEECCCCCCCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-------------------
Confidence 48999999998876 99999999999 4554 34556665543 35688999888863
Q ss_pred ccCccCCceEEEEEEeCCcc
Q 045470 111 VRRHFHDDITVIILFLDSYL 130 (155)
Q Consensus 111 ~~~g~~DNiTvivv~l~~~~ 130 (155)
+|+.||||++||+++..+
T Consensus 621 --~gg~DNITvIvV~l~~~p 638 (645)
T PRK14559 621 --YNGHDNITAILVRLKVRP 638 (645)
T ss_pred --cCCCCcEEEEEEEeccCC
Confidence 678999999999997653
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.15 E-value=7.6e-11 Score=107.40 Aligned_cols=77 Identities=34% Similarity=0.472 Sum_probs=69.2
Q ss_pred CCceeccceEEEEEcCCCCeEEEEeeCCCCccCCHHHHHHHHHcCCc-chHHHHHHHHHHHHHHHhhhhhhhcccccccc
Q 045470 32 KPILLAEPTVSVQRLYPEDQFLIFASDGLWEHLSNQEAVDIVHNCPR-NGVARKLVKAALHEAAKKREMRYSDLKKIDRG 110 (155)
Q Consensus 32 ~~~v~a~Pdv~~~~l~~~d~flILaSDGLwd~l~~~ei~~~i~~~~~-~~~a~~L~~~a~~~~a~~~~~~~~~~~~~~~~ 110 (155)
.|+|.+.|+|....|+++|+|||+|+-+||++|+-+++++.++...+ -.+|++|++.|.++
T Consensus 697 ~P~v~p~Phv~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~vRn~~dpL~AAkKL~d~AqSY------------------ 758 (1081)
T KOG0618|consen 697 FPHVLPDPHVSVVILTEQDEFLIVGNKQLWSVLSIDTAVDAVRNVEDPLLAAKKLCDLAQSY------------------ 758 (1081)
T ss_pred cccccCCCceeeEecccCceEEEEcchHHhhhccHHHHHHHHhcCCchHHHHHHHHHHHHhc------------------
Confidence 46899999999999999999999999999999999999999996554 35899999999875
Q ss_pred ccCccCCceEEEEEEeCCc
Q 045470 111 VRRHFHDDITVIILFLDSY 129 (155)
Q Consensus 111 ~~~g~~DNiTvivv~l~~~ 129 (155)
|..||++++||++++.
T Consensus 759 ---gc~~nv~vlVv~l~~~ 774 (1081)
T KOG0618|consen 759 ---GCAENVSVLVVRLNHL 774 (1081)
T ss_pred ---ccccCeeEEEEEeecc
Confidence 4589999999999874
No 14
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.00 E-value=1.1e-09 Score=89.80 Aligned_cols=80 Identities=23% Similarity=0.288 Sum_probs=55.5
Q ss_pred eEEEEEcCCCCeEEEEeeCCCCccCCHHHHHHHHHcCCc------chHHHHHHHHHHHHHHHhhhhhhhccccccc----
Q 045470 40 TVSVQRLYPEDQFLIFASDGLWEHLSNQEAVDIVHNCPR------NGVARKLVKAALHEAAKKREMRYSDLKKIDR---- 109 (155)
Q Consensus 40 dv~~~~l~~~d~flILaSDGLwd~l~~~ei~~~i~~~~~------~~~a~~L~~~a~~~~a~~~~~~~~~~~~~~~---- 109 (155)
++..+.++++| +||||||||||+|.+++|+.++..... +..|+.+++.|.+.+-+. ...+++..
T Consensus 237 d~~~~~v~~GD-vIilATDGlfDNl~e~~Il~il~~~~~~~~~~lq~~A~~ia~~Ar~ls~d~-----~~~SPFA~~Ar~ 310 (330)
T KOG1379|consen 237 DVTSFDVQKGD-VIILATDGLFDNLPEKEILSILKGLDARGNLDLQVTAQKIAEKARELSRDP-----KFQSPFAQAARE 310 (330)
T ss_pred ceEEEeccCCC-EEEEecccccccccHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhccCc-----CcCChHHHHHHH
Confidence 57799999999 999999999999999999999976433 345666666665443221 12222211
Q ss_pred ---cccCccCCceEEEEEE
Q 045470 110 ---GVRRHFHDDITVIILF 125 (155)
Q Consensus 110 ---~~~~g~~DNiTvivv~ 125 (155)
....|..||||++|..
T Consensus 311 ~g~~~~gGK~DdITvvls~ 329 (330)
T KOG1379|consen 311 HGFKAYGGKPDDITVVLSS 329 (330)
T ss_pred hCcccCCCCcccEEEEEec
Confidence 1123447999999875
No 15
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=98.12 E-value=8.8e-06 Score=74.63 Aligned_cols=70 Identities=23% Similarity=0.322 Sum_probs=50.1
Q ss_pred cceEEEEEcCCCCeEEEEeeCCCCccCCHHH-----HHHHHHcC---CcchHHHHHHHHHHHHHHHhhhhhhhccccccc
Q 045470 38 EPTVSVQRLYPEDQFLIFASDGLWEHLSNQE-----AVDIVHNC---PRNGVARKLVKAALHEAAKKREMRYSDLKKIDR 109 (155)
Q Consensus 38 ~Pdv~~~~l~~~d~flILaSDGLwd~l~~~e-----i~~~i~~~---~~~~~a~~L~~~a~~~~a~~~~~~~~~~~~~~~ 109 (155)
+++....++.++| +|+|+||||||..+.++ +.+++... ..++.++.+++.+....
T Consensus 686 ~~~~~~~~L~~GD-~Lll~SDGv~E~~~~~~~~~~~l~~~l~~~~~~~p~ela~~Il~~a~~~~---------------- 748 (764)
T TIGR02865 686 DVELVRKKLKNGD-LIVMVSDGVLEGEKEVEGKVLWLVRKLKETNTNDPEEIAEYLLEKAKELR---------------- 748 (764)
T ss_pred ccceEEEEeCCCC-EEEEECCCCCcCCcccccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc----------------
Confidence 4566788888998 89999999999887533 66777543 23556777777775421
Q ss_pred cccCccCCceEEEEEEe
Q 045470 110 GVRRHFHDDITVIILFL 126 (155)
Q Consensus 110 ~~~~g~~DNiTvivv~l 126 (155)
.....||+|++++++
T Consensus 749 --~~~~~DD~Tvlvirv 763 (764)
T TIGR02865 749 --SGKIKDDMTVIVAKV 763 (764)
T ss_pred --CCCCCCCeEEEEEEe
Confidence 112379999999986
No 16
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=98.00 E-value=3.2e-05 Score=58.30 Aligned_cols=71 Identities=23% Similarity=0.343 Sum_probs=43.6
Q ss_pred ccceEEEEEcCCCCeEEEEeeCCCCccCCHH-------HHHHHHHcCC---cchHHHHHHHHHHHHHHHhhhhhhhcccc
Q 045470 37 AEPTVSVQRLYPEDQFLIFASDGLWEHLSNQ-------EAVDIVHNCP---RNGVARKLVKAALHEAAKKREMRYSDLKK 106 (155)
Q Consensus 37 a~Pdv~~~~l~~~d~flILaSDGLwd~l~~~-------ei~~~i~~~~---~~~~a~~L~~~a~~~~a~~~~~~~~~~~~ 106 (155)
.+.....+++.++| .|+|+||||+|..+.+ ++.+++.... .++.+..+++.+.. .
T Consensus 112 ~~~~~~~~~l~~gd-~l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~----~---------- 176 (193)
T PF07228_consen 112 IDYQEQEIQLEPGD-RLLLYTDGLFEALNEDGEFFGEERLLELLDENRGLSPQEIIDALLEAIDR----F---------- 176 (193)
T ss_dssp TCEEEEEEE--TTE-EEEEECHHHCTTTCHHCHHCCCHHHHHHHHCHTTS-HHHHHHHHHHHHHH----H----------
T ss_pred ccccceEEEecccc-EEEEeCCChhhccCCccchhHHHHHHHHHhhccCCCHHHHHHHHHHHHHH----h----------
Confidence 44556678888888 8999999999998543 3456666432 23334444444332 0
Q ss_pred ccccccCccCCceEEEEEEe
Q 045470 107 IDRGVRRHFHDDITVIILFL 126 (155)
Q Consensus 107 ~~~~~~~g~~DNiTvivv~l 126 (155)
-.....||+|++++++
T Consensus 177 ----~~~~~~DD~tvl~~~~ 192 (193)
T PF07228_consen 177 ----GKGPLRDDITVLVIRR 192 (193)
T ss_dssp ----TTSSTSS-EEEEEEEE
T ss_pred ----cCCCCCCceEEEEEEE
Confidence 0245589999999986
No 17
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=97.59 E-value=0.00019 Score=54.33 Aligned_cols=52 Identities=21% Similarity=0.339 Sum_probs=39.7
Q ss_pred ccceEEEEEcCCCCeEEEEeeCCCCccCCHHHHHHHHHcCCc---chHHHHHHHHH
Q 045470 37 AEPTVSVQRLYPEDQFLIFASDGLWEHLSNQEAVDIVHNCPR---NGVARKLVKAA 89 (155)
Q Consensus 37 a~Pdv~~~~l~~~d~flILaSDGLwd~l~~~ei~~~i~~~~~---~~~a~~L~~~a 89 (155)
.+++...+++.++| .|+|+||||||.++.+++.+++.+... ++.++++++++
T Consensus 137 ~~~~~~~~~l~~gd-~l~l~TDGl~e~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~ 191 (193)
T smart00331 137 VEVDVRELTLEPGD-LLLLYTDGLTEARNPERLEELLEELLGSPPAEIAQRILEEL 191 (193)
T ss_pred CcceeEEEeeCCCC-EEEEECCCccccCChHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 34677888899998 888999999999999999999987642 23344444443
No 18
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=96.80 E-value=0.007 Score=50.82 Aligned_cols=72 Identities=19% Similarity=0.313 Sum_probs=45.7
Q ss_pred cceEEEEEcCCCCeEEEEeeCCCCc-------cCCHHHHHHHHHcCC---cchHHHHHHHHHHHHHHHhhhhhhhccccc
Q 045470 38 EPTVSVQRLYPEDQFLIFASDGLWE-------HLSNQEAVDIVHNCP---RNGVARKLVKAALHEAAKKREMRYSDLKKI 107 (155)
Q Consensus 38 ~Pdv~~~~l~~~d~flILaSDGLwd-------~l~~~ei~~~i~~~~---~~~~a~~L~~~a~~~~a~~~~~~~~~~~~~ 107 (155)
.+.+...++.++| +++|.|||+.| .+..+...+++.... .++....+++...+...
T Consensus 285 ~~~~~~~~l~~gd-~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~l~~~~~------------- 350 (367)
T COG2208 285 QYEVASLQLEPGD-LLVLYTDGVTEARNSDGEFFGLERLLKILGRLLGQPAEEILEAILESLEELQG------------- 350 (367)
T ss_pred cchheeEEecCCC-EEEEEcCCeeeeecCCccEecHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhC-------------
Confidence 3445677788866 99999999998 455666666666422 23344444444332211
Q ss_pred cccccCccCCceEEEEEEeC
Q 045470 108 DRGVRRHFHDDITVIILFLD 127 (155)
Q Consensus 108 ~~~~~~g~~DNiTvivv~l~ 127 (155)
.....||+|++++++.
T Consensus 351 ----~~~~~DDiTll~lk~~ 366 (367)
T COG2208 351 ----DQIQDDDITLLVLKVK 366 (367)
T ss_pred ----CccccCceEEEEEEec
Confidence 2334688999999985
No 19
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=96.19 E-value=0.0037 Score=47.85 Aligned_cols=36 Identities=22% Similarity=0.467 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCeEEEEeeCCCCccCCHHH-HHHHHHcC
Q 045470 40 TVSVQRLYPEDQFLIFASDGLWEHLSNQE-AVDIVHNC 76 (155)
Q Consensus 40 dv~~~~l~~~d~flILaSDGLwd~l~~~e-i~~~i~~~ 76 (155)
++..+++.+++ .|+|||||||+.+.+.+ +..++.+.
T Consensus 158 ~~~~~~~~~~d-~ilL~SDG~~~~l~~~~~~~~~l~~~ 194 (212)
T PF13672_consen 158 QYGSIPLEEGD-VILLCSDGVWDNLRSYEDLEQFLKDL 194 (212)
T ss_dssp EEEEEE--TT--EEEEE-HHHHTTS-HHHHHHHH----
T ss_pred eEEEEEcCCCC-EEEEECcCccccCCCHHHHHHHhhhc
Confidence 66667777777 78899999999998765 55666543
No 20
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=55.91 E-value=7.2 Score=25.57 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=17.9
Q ss_pred EcCCCCeEEEEeeCCCCccCCHHHHH
Q 045470 45 RLYPEDQFLIFASDGLWEHLSNQEAV 70 (155)
Q Consensus 45 ~l~~~d~flILaSDGLwd~l~~~ei~ 70 (155)
++...++-+++|+||+|=.+...-+.
T Consensus 22 ~l~~~G~Rllva~nGv~lEv~r~WL~ 47 (72)
T PF09436_consen 22 PLERPGHRLLVASNGVFLEVRRPWLH 47 (72)
T ss_pred ccccCCcEEEEecCcEEEEEechHHH
Confidence 34445556889999999777665543
No 21
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=37.85 E-value=1.4e+02 Score=21.37 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=32.8
Q ss_pred CCceeccceEEEEEcCCCCeEEEEeeCCCCc-------cCCHHHHHHHHHc
Q 045470 32 KPILLAEPTVSVQRLYPEDQFLIFASDGLWE-------HLSNQEAVDIVHN 75 (155)
Q Consensus 32 ~~~v~a~Pdv~~~~l~~~d~flILaSDGLwd-------~l~~~ei~~~i~~ 75 (155)
.-+|+..|+|...+...++-|.|+|..-.=+ .++.+++--++.+
T Consensus 36 ~~~Vi~~P~V~~m~~~g~~tY~I~Ge~~~e~~~~~~~~~i~~edI~lv~~q 86 (115)
T PRK06369 36 KEIVFENPQVTVMDAQGQKTYQIVGEPEEVEKEAEKEVEIPEEDIELVAEQ 86 (115)
T ss_pred EEEEEcCCeEEEEecCCCcEEEEEeccEEeeccccccCCCCHHHHHHHHHH
Confidence 5679999999999999888899999876644 3555555544443
No 22
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=30.01 E-value=2.1e+02 Score=20.49 Aligned_cols=42 Identities=10% Similarity=0.191 Sum_probs=29.7
Q ss_pred ceeccceEEEEEcCCCCeEEEEeeCCCCccCCHHHHHHHHHc
Q 045470 34 ILLAEPTVSVQRLYPEDQFLIFASDGLWEHLSNQEAVDIVHN 75 (155)
Q Consensus 34 ~v~a~Pdv~~~~l~~~d~flILaSDGLwd~l~~~ei~~~i~~ 75 (155)
...+.|++....++.+.--++-...|+|..++.++..++...
T Consensus 73 I~LP~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (157)
T PF14014_consen 73 ITLPPPEILSVEIDEDSIKVYDEKGGWFNPITPEDQNEAQKE 114 (157)
T ss_pred EECCCcEEeeeecCccceEEEEccCCccCCCCHHHHHHHHHH
Confidence 456778888888886654455677888888888776666554
No 23
>TIGR03735 PRTRC_A PRTRC system protein A. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated protein A.
Probab=23.43 E-value=47 Score=25.83 Aligned_cols=37 Identities=24% Similarity=0.409 Sum_probs=23.2
Q ss_pred ccceEE-EEEcCCCCeEEEEeeCCCCccCCHHHHHHHH
Q 045470 37 AEPTVS-VQRLYPEDQFLIFASDGLWEHLSNQEAVDIV 73 (155)
Q Consensus 37 a~Pdv~-~~~l~~~d~flILaSDGLwd~l~~~ei~~~i 73 (155)
..|-.. .-++...++-+++|+||||--+.-..+.-+.
T Consensus 12 ~~pr~~~~~~l~~~g~r~~~a~~G~~lev~r~wl~~~~ 49 (192)
T TIGR03735 12 AAPRFGVLEPLEKPGHRFIVAADGVWREVRRPWLHAIQ 49 (192)
T ss_pred eccCCCCCCccccCCcEEEEecCcEEEEEecHHHHHHH
Confidence 344433 2334444446779999999888877665444
No 24
>PRK05457 heat shock protein HtpX; Provisional
Probab=22.91 E-value=1.1e+02 Score=24.87 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.0
Q ss_pred EEEEeeCCCCccCCHHHHHHHHHcC
Q 045470 52 FLIFASDGLWEHLSNQEAVDIVHNC 76 (155)
Q Consensus 52 flILaSDGLwd~l~~~ei~~~i~~~ 76 (155)
-+|+-|+||++.++++|+..++.+.
T Consensus 117 ~~V~vt~gLl~~L~~~El~aVlAHE 141 (284)
T PRK05457 117 SLVAVSTGLLQNMSRDEVEAVLAHE 141 (284)
T ss_pred eEEEeehHHhhhCCHHHHHHHHHHH
Confidence 6889999999999999998888653
No 25
>COG2168 DsrH Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=21.56 E-value=88 Score=21.62 Aligned_cols=36 Identities=17% Similarity=0.373 Sum_probs=28.6
Q ss_pred EEEEEcCCCCeEEEEeeCCCCccCCHHHHHHHHHcCC
Q 045470 41 VSVQRLYPEDQFLIFASDGLWEHLSNQEAVDIVHNCP 77 (155)
Q Consensus 41 v~~~~l~~~d~flILaSDGLwd~l~~~ei~~~i~~~~ 77 (155)
....-++++| -++|..||++-.+...+..+.++..+
T Consensus 17 ~~l~~l~~~D-~vlL~qdGV~aAl~~~~~~~sl~~~p 52 (96)
T COG2168 17 LLLRLLTEGD-AVLLLQDGVYAALKGNRYLASLRESP 52 (96)
T ss_pred HHHHHhcccC-eEEEEcccchhhhcCcHHHHHHhcCc
Confidence 3445566777 68899999999999988888888775
No 26
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=21.04 E-value=83 Score=26.36 Aligned_cols=28 Identities=32% Similarity=0.622 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCeEEEEeeCCCCccCCHHHH
Q 045470 40 TVSVQRLYPEDQFLIFASDGLWEHLSNQEA 69 (155)
Q Consensus 40 dv~~~~l~~~d~flILaSDGLwd~l~~~ei 69 (155)
|-..+++. |..|+++.||+|..|-+++-
T Consensus 45 DAavI~v~--~~~lliaadGi~g~l~~~dP 72 (324)
T COG2144 45 DAAVIRVG--DGKLLIAADGIWGKLIDADP 72 (324)
T ss_pred ceEEEeeC--CcEEEEecCCccccccccCc
Confidence 34455555 45899999999977766553
No 27
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=20.01 E-value=1.1e+02 Score=24.42 Aligned_cols=28 Identities=18% Similarity=0.395 Sum_probs=20.6
Q ss_pred CCCeEEEEeeCCCCccCCHHHHHHHHHcCC
Q 045470 48 PEDQFLIFASDGLWEHLSNQEAVDIVHNCP 77 (155)
Q Consensus 48 ~~d~flILaSDGLwd~l~~~ei~~~i~~~~ 77 (155)
++|+++||||-| +.-..|.+++++.+..
T Consensus 40 pGdRvlvl~taG--NLA~tQaV~~ll~e~~ 67 (255)
T COG3484 40 PGDRVLVLCTAG--NLAITQAVLHLLDERI 67 (255)
T ss_pred CCceEEEEEecC--ccHHHHHHHHHHHHHh
Confidence 678899999999 4455666777776543
Done!