BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045471
         (185 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2GWG|A Chain A, Crystal Structure Of 4-Oxalomesaconate Hydratase, Ligj,
           From Rhodopseudomonas Palustris, Northeast Structural
           Genomics Target Rpr66.
 pdb|2GWG|B Chain B, Crystal Structure Of 4-Oxalomesaconate Hydratase, Ligj,
           From Rhodopseudomonas Palustris, Northeast Structural
           Genomics Target Rpr66
          Length = 350

 Score = 28.5 bits (62), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 138 NAKANWFAICQQFNSFCQRISGSLIGSFVGMALL 171
           N  + W AIC   N  C R+S     +F+G A L
Sbjct: 83  NVSSTWAAIC---NELCYRVSQLFPDNFIGAAXL 113


>pdb|2XFC|A Chain A, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
           Into The Semliki Forest Virus Cryo-Em Map
 pdb|2XFC|D Chain D, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
           Into The Semliki Forest Virus Cryo-Em Map
 pdb|2XFC|F Chain F, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
           Into The Semliki Forest Virus Cryo-Em Map
 pdb|2XFC|H Chain H, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
           Into The Semliki Forest Virus Cryo-Em Map
          Length = 439

 Score = 28.5 bits (62), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 2/34 (5%)

Query: 152 SFCQRISGSLIGSFVGMALLILIIMLCGVALSRR 185
           S+ Q+I+G  +G  V +A LILI++LC V+ SR 
Sbjct: 408 SWVQKITGG-VGLVVAVAALILIVVLC-VSFSRH 439


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.140    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,826,165
Number of Sequences: 62578
Number of extensions: 110171
Number of successful extensions: 189
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 189
Number of HSP's gapped (non-prelim): 2
length of query: 185
length of database: 14,973,337
effective HSP length: 93
effective length of query: 92
effective length of database: 9,153,583
effective search space: 842129636
effective search space used: 842129636
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 48 (23.1 bits)