Query 045471
Match_columns 185
No_of_seqs 104 out of 442
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 13:36:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045471.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045471hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01569 A_tha_TIGR01569 plan 100.0 3E-46 6.6E-51 295.0 17.9 154 29-182 1-154 (154)
2 PF04535 DUF588: Domain of unk 100.0 8E-40 1.7E-44 256.5 16.2 147 22-170 1-149 (149)
3 PF01284 MARVEL: Membrane-asso 98.7 7.5E-07 1.6E-11 67.6 12.9 141 25-176 3-143 (144)
4 PF05702 Herpes_UL49_5: Herpes 27.4 64 0.0014 23.7 2.6 51 133-183 35-85 (98)
5 KOG4016 Synaptic vesicle prote 25.2 4.2E+02 0.0091 22.4 13.4 148 24-181 21-169 (233)
6 PF06376 DUF1070: Protein of u 19.6 1.3E+02 0.0029 17.8 2.4 15 111-125 13-27 (34)
7 COG5515 Uncharacterized conser 13.5 1.2E+02 0.0026 20.6 1.4 11 151-161 15-25 (70)
8 PF07584 BatA: Aerotolerance r 12.5 2.1E+02 0.0046 19.3 2.4 23 22-44 53-75 (77)
9 PF14147 Spore_YhaL: Sporulati 12.1 2.8E+02 0.006 18.1 2.7 22 70-91 2-23 (52)
10 COG3647 Predicted membrane pro 11.0 3.9E+02 0.0084 21.8 3.8 30 137-169 169-198 (205)
No 1
>TIGR01569 A_tha_TIGR01569 plant integral membrane protein TIGR01569. This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized.
Probab=100.00 E-value=3e-46 Score=295.05 Aligned_cols=154 Identities=47% Similarity=0.817 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccccceeeeeeeccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhH
Q 045471 29 FVLRLLAFAGALGSAIAMGTTNETLPFFSQLIRFRAEYDDLPSFTFFVAANAVVSGYLILSLSLSIFHIVRSRAQKSRIL 108 (185)
Q Consensus 29 l~LR~~a~~~sl~a~~vM~t~~q~~~~~~~~~~~~~~f~~~~af~ylv~a~~i~~~Ysllql~~~i~~~~~~~~~~~~~~ 108 (185)
++||+++++++++|+++|+||+|+.+++++.+++++||+|+++|+|+|++|+|+|+|+++|++++++.+.+++....+|+
T Consensus 1 l~LR~~~~~~sl~A~vvm~t~~qt~~~~~~~~~~~a~f~d~~af~y~v~anai~~~Ysll~l~~~~~~~~~~~~~~~~~~ 80 (154)
T TIGR01569 1 LILRVLAFSATLAAAIVMGTNRETKVVFVQLITFKAKFSDLPAFVYFVVANAIACGYSLLSLVVSIFGLLKRRVFFKLIA 80 (154)
T ss_pred CcHHHHHHHHHHHHHHHhhcccceeeeecccceeeeeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence 46999999999999999999999998866557889999999999999999999999999999999998877766666799
Q ss_pred HhhHHHHHHHHHHHHhhhHHHHHHHHHhCCccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 045471 109 LVFFDTAMLALLTGSASAAAAIVYLAHKGNAKANWFAICQQFNSFCQRISGSLIGSFVGMALLILIIMLCGVAL 182 (185)
Q Consensus 109 ~f~~Dqv~ayLL~saasAA~~i~~l~~~G~~~~~W~~vC~~~~~FC~~~~~Si~lsf~a~~~~~~~s~lSa~~L 182 (185)
+|++||+++||++||++||+++++++|+||+|.+|+|+|+++++||+|+++|++++|++++++++++++|++++
T Consensus 81 ~f~~D~v~~~Ll~sa~sAA~av~~l~~~G~~~~~W~~iC~~~~~FC~~~~~sl~~s~~a~v~~~llsv~Sa~~~ 154 (154)
T TIGR01569 81 LFFLDLVMLALLSSGTSAAAAVAYVGKLGNKEAGWLKICGVFGKFCDRIAGSLALSLFAVILLVLLSILSAISL 154 (154)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999985
No 2
>PF04535 DUF588: Domain of unknown function (DUF588); InterPro: IPR006702 This family of plant proteins contains a domain that may have a catalytic activity. It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices.
Probab=100.00 E-value=8e-40 Score=256.47 Aligned_cols=147 Identities=38% Similarity=0.683 Sum_probs=136.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhcCccccccccceeeeeeeccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 045471 22 KGISILDFVLRLLAFAGALGSAIAMGTTNETLPFFSQLIRFRAEYDDLPSFTFFVAANAVVSGYLILSLSLSIFHIVRSR 101 (185)
Q Consensus 22 ~~~~~~~l~LR~~a~~~sl~a~~vM~t~~q~~~~~~~~~~~~~~f~~~~af~ylv~a~~i~~~Ysllql~~~i~~~~~~~ 101 (185)
|+.+..+++||+++++++++|+++|++|+|+.++.+ .+++++|+|+++|+|++++|+|+++|+++|++.+++.+.+++
T Consensus 1 ~~~~~~~l~LR~~~~~~sl~a~~vm~t~~qt~~~~~--~~~~~~f~~~~af~ylv~a~~i~~~Ysl~~~~~~~~~~~~~~ 78 (149)
T PF04535_consen 1 RSLRIASLVLRLLAFVLSLAALAVMATNKQTVSVFS--IQFTAKFSDYPAFRYLVAANVIACVYSLLQLVLSIYSLSRGK 78 (149)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHhcCCcceeec--cccceeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 456789999999999999999999999999987753 678999999999999999999999999999999999887654
Q ss_pred --ccchhhHHhhHHHHHHHHHHHHhhhHHHHHHHHHhCCccchhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 045471 102 --AQKSRILLVFFDTAMLALLTGSASAAAAIVYLAHKGNAKANWFAICQQFNSFCQRISGSLIGSFVGMAL 170 (185)
Q Consensus 102 --~~~~~~~~f~~Dqv~ayLL~saasAA~~i~~l~~~G~~~~~W~~vC~~~~~FC~~~~~Si~lsf~a~~~ 170 (185)
.+...|++|++||+++||++|+++||+++++++++|+++.+|+++|+.+++||+|+++|++++|+++++
T Consensus 79 ~~~~~~~~~~f~~Dqv~~~ll~sa~~Aa~~~~~~~~~g~~~~~W~~vC~~~~~FC~~~~~sv~lsf~a~~~ 149 (149)
T PF04535_consen 79 LRSKLLAWFLFILDQVLAYLLFSAASAAAAVAYLGKKGNSHVQWSKVCSQFGKFCNRAAASVALSFLAFVA 149 (149)
T ss_pred CcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhccchhhHHHHHHHHHHHHHHHHHC
Confidence 234568999999999999999999999999999999999999999999999999999999999999874
No 3
>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain. The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].
Probab=98.67 E-value=7.5e-07 Score=67.63 Aligned_cols=141 Identities=16% Similarity=0.055 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCccccccccceeeeeeeccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc
Q 045471 25 SILDFVLRLLAFAGALGSAIAMGTTNETLPFFSQLIRFRAEYDDLPSFTFFVAANAVVSGYLILSLSLSIFHIVRSRAQK 104 (185)
Q Consensus 25 ~~~~l~LR~~a~~~sl~a~~vM~t~~q~~~~~~~~~~~~~~f~~~~af~ylv~a~~i~~~Ysllql~~~i~~~~~~~~~~ 104 (185)
+....+||+++++++++.+.+++....+.. .......++..|.+.+.++...+++.-++..........+..
T Consensus 3 ~s~~~ilR~lq~~~~~i~~~l~~~~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~ 74 (144)
T PF01284_consen 3 RSPSGILRILQLVFALIIFGLVASSIATGS--------QIYGGSPSACGFALFVAVLSFLYTLIFLLLYLFSLKYRPRIP 74 (144)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHhccc--------cccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 345789999999999999999998764321 123455678899999999999999888888776521122233
Q ss_pred hhhHHhhHHHHHHHHHHHHhhhHHHHHHHHHhCCccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 045471 105 SRILLVFFDTAMLALLTGSASAAAAIVYLAHKGNAKANWFAICQQFNSFCQRISGSLIGSFVGMALLILIIM 176 (185)
Q Consensus 105 ~~~~~f~~Dqv~ayLL~saasAA~~i~~l~~~G~~~~~W~~vC~~~~~FC~~~~~Si~lsf~a~~~~~~~s~ 176 (185)
+.+.+++.|.+++.+-+.+..+-+.-..-.+.+++ +.+.+...++-|+...++.+++++.++.+..+..
T Consensus 75 ~~~~~~~~~~v~~il~l~a~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~Aa~~f~~~~~~l~~~s~~ 143 (144)
T PF01284_consen 75 WPLVEFIFDAVFAILWLAAFIALAAYLSDHSCSNT---GNDYSYSGCSRCGAWKAAAAFGFLNWLLFIVSAV 143 (144)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhcCcccccC---CCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999988876665432211111111 2233344567899999999999999999987764
No 4
>PF05702 Herpes_UL49_5: Herpesvirus UL49.5 envelope/tegument protein; InterPro: IPR008647 UL49.5 protein consists of 98 amino acids with a calculated molecular mass of 10,155 Da. It contains putative signal peptide and transmembrane domains but lacks a consensus sequence for N glycosylation. UL49.5 protein is an O-glycosylated structural component of the viral envelope [].
Probab=27.43 E-value=64 Score=23.75 Aligned_cols=51 Identities=12% Similarity=0.178 Sum_probs=34.9
Q ss_pred HHHhCCccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 045471 133 LAHKGNAKANWFAICQQFNSFCQRISGSLIGSFVGMALLILIIMLCGVALS 183 (185)
Q Consensus 133 l~~~G~~~~~W~~vC~~~~~FC~~~~~Si~lsf~a~~~~~~~s~lSa~~L~ 183 (185)
..+.++.+.-|..-|+.-|-.-+.-.++.++=+++.+.-.+..+.-+||.+
T Consensus 35 ~~~~e~~~~FW~a~CSArGv~i~~~s~asV~FY~sL~aV~vall~~aY~aC 85 (98)
T PF05702_consen 35 IAREESRRDFWSAACSARGVPIDFPSAASVLFYVSLLAVCVALLAYAYRAC 85 (98)
T ss_pred hhHhHHHhcccccccccCceecCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556799999988877777777777777776666655555666643
No 5
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.17 E-value=4.2e+02 Score=22.37 Aligned_cols=148 Identities=14% Similarity=0.009 Sum_probs=81.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCccccccccceeeeeeeccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q 045471 24 ISILDFVLRLLAFAGALGSAIAMGTTNETLPFFSQLIRFRAEYDDLPSFTFFVAANAVVSGYLILSLSLSIFHIVRSRAQ 103 (185)
Q Consensus 24 ~~~~~l~LR~~a~~~sl~a~~vM~t~~q~~~~~~~~~~~~~~f~~~~af~ylv~a~~i~~~Ysllql~~~i~~~~~~~~~ 103 (185)
++.-..++|++..+|+++-..-+.+.--.+..-. ..++=.==+|..+.+|=+++-+.++.=+++-++++..--...+.+
T Consensus 21 ~rkP~ti~R~~~~lFsliVf~si~~eGy~n~~~~-~~~~Ciynrn~~ACsyg~avG~~Afla~~~flvlD~~f~qISsv~ 99 (233)
T KOG4016|consen 21 LRKPQTILRVVSWLFSLIVFGSIVNEGYLNSASS-GEEFCIYNRNSNACSYGVAVGVLAFLACLAFLVLDVYFPQISSVK 99 (233)
T ss_pred hcCchhHHHHHHHHHHHhheeeeccccccCcccC-CceEEEECCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence 4556789999999999887766655322221100 011112235778999999999999888888888877532111111
Q ss_pred chhhHHhhHHHHHHHHHHHHhhhHHHHHHHHHhCCccchhhhhh-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045471 104 KSRILLVFFDTAMLALLTGSASAAAAIVYLAHKGNAKANWFAIC-QQFNSFCQRISGSLIGSFVGMALLILIIMLCGVA 181 (185)
Q Consensus 104 ~~~~~~f~~Dqv~ayLL~saasAA~~i~~l~~~G~~~~~W~~vC-~~~~~FC~~~~~Si~lsf~a~~~~~~~s~lSa~~ 181 (185)
.++ -..+.|.++..|-.--= =.+-.++.. ||..-- ..+.-=-+.+.++|+.+|++.+.-...+.+.-.|
T Consensus 100 ~Rk-raVl~Dl~~Salwtflw--fvGFc~l~n------qwqvs~p~~~~~~a~saraaIafsffSilsW~~~A~lA~qR 169 (233)
T KOG4016|consen 100 DRK-RAVLADLGVSALWAFLW--FVGFCFLAN------QWQVSKPKENPLGAGSARAAIAFSFFSILSWGGQAVLAFQR 169 (233)
T ss_pred hhH-HHHHHHHHHHHHHHHHH--HHHHHHHHH------HhhccCCCCCCcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 12345554443320000 011223322 443110 1111123478889999999888888777765443
No 6
>PF06376 DUF1070: Protein of unknown function (DUF1070); InterPro: IPR009424 This entry represents the arabinogalactan peptide family found in plants [].
Probab=19.56 E-value=1.3e+02 Score=17.84 Aligned_cols=15 Identities=20% Similarity=0.093 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHhh
Q 045471 111 FFDTAMLALLTGSAS 125 (185)
Q Consensus 111 ~~Dqv~ayLL~saas 125 (185)
..||.++|+|+-++-
T Consensus 13 aiDqgiay~Lm~~Al 27 (34)
T PF06376_consen 13 AIDQGIAYMLMLVAL 27 (34)
T ss_pred hhhHHHHHHHHHHHH
Confidence 579999999976543
No 7
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=13.45 E-value=1.2e+02 Score=20.55 Aligned_cols=11 Identities=45% Similarity=1.141 Sum_probs=9.1
Q ss_pred hhhhHHHHHHH
Q 045471 151 NSFCQRISGSL 161 (185)
Q Consensus 151 ~~FC~~~~~Si 161 (185)
..||+|+++++
T Consensus 15 ssFChrvta~L 25 (70)
T COG5515 15 SSFCHRVTAAL 25 (70)
T ss_pred HHHHHHHHHHH
Confidence 37999999875
No 8
>PF07584 BatA: Aerotolerance regulator N-terminal; InterPro: IPR024163 The Batl operon appears to be important in pathogenicity and aerotolerance. BatA ensures bacterial survival in the early stages of the infection process, when the infected sites are aerobic, and is produced under conditions of oxidative stress []. Proteins produced by the Batl operon share a highly-conserved sequence at their N terminus and the full length proteins carry multiple membrane-spanning domains []. This entry represents the conserved N-terminal domain, which is also found in some uncharacterised proteins.
Probab=12.49 E-value=2.1e+02 Score=19.29 Aligned_cols=23 Identities=30% Similarity=0.186 Sum_probs=17.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH
Q 045471 22 KGISILDFVLRLLAFAGALGSAI 44 (185)
Q Consensus 22 ~~~~~~~l~LR~~a~~~sl~a~~ 44 (185)
+..+...+.||++++++.+++++
T Consensus 53 ~~~~~l~l~L~lLal~lli~AlA 75 (77)
T PF07584_consen 53 RLRRHLLLLLRLLALALLILALA 75 (77)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHc
Confidence 34566789999999999888763
No 9
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=12.13 E-value=2.8e+02 Score=18.08 Aligned_cols=22 Identities=32% Similarity=0.729 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 045471 70 PSFTFFVAANAVVSGYLILSLS 91 (185)
Q Consensus 70 ~af~ylv~a~~i~~~Ysllql~ 91 (185)
|=..|++++.++.++|-++-..
T Consensus 2 PwWvY~vi~gI~~S~ym~v~t~ 23 (52)
T PF14147_consen 2 PWWVYFVIAGIIFSGYMAVKTA 23 (52)
T ss_pred cchHHHHHHHHHHHHHHHHHHH
Confidence 3457899999888888766443
No 10
>COG3647 Predicted membrane protein [Function unknown]
Probab=11.04 E-value=3.9e+02 Score=21.81 Aligned_cols=30 Identities=13% Similarity=0.247 Sum_probs=20.2
Q ss_pred CCccchhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 045471 137 GNAKANWFAICQQFNSFCQRISGSLIGSFVGMA 169 (185)
Q Consensus 137 G~~~~~W~~vC~~~~~FC~~~~~Si~lsf~a~~ 169 (185)
|.+..||+.. -|-+|+..++=.++.+++.+
T Consensus 169 GsQGDqWDaQ---kDmlcdtlGAltal~lla~~ 198 (205)
T COG3647 169 GSQGDQWDAQ---KDMLCDTLGALTALILLARF 198 (205)
T ss_pred hcccchhhhH---HhHHHHHHHHHHHHHHHHHH
Confidence 3444578763 46789988887777776643
Done!