Query 045471
Match_columns 185
No_of_seqs 104 out of 442
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 00:07:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045471.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045471hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_J Cytochrome C oxidase po 8.8 3.4E+02 0.011 17.0 3.2 29 66-94 26-54 (59)
2 2yfv_C SCM3, KLLA0F05115P; cel 8.4 91 0.0031 20.1 0.3 18 140-157 35-52 (63)
3 1jb0_X Photosystem I subunit P 6.8 2.9E+02 0.0098 15.6 1.9 13 74-86 18-30 (35)
4 2y69_J Cytochrome C oxidase po 5.5 5.7E+02 0.019 17.0 3.2 31 64-94 45-75 (80)
5 3qoe_A Heterocyst differentiat 5.4 1.5E+02 0.0053 24.1 0.3 13 111-123 18-30 (302)
6 2lg4_A Aurelin; antimicrobial 7.0 1.5E+02 0.0051 17.3 0.0 13 145-157 10-22 (40)
7 3m03_A ORC6, origin recognitio 4.9 2.1E+02 0.0072 19.8 0.7 21 136-156 73-93 (95)
8 1emz_A Envelope glycoprotein E 4.7 2.1E+02 0.0072 15.1 0.5 15 129-147 9-23 (26)
9 1iij_A ERBB-2 receptor protein 4.6 4.2E+02 0.014 14.9 1.7 23 160-182 9-31 (35)
10 2jwa_A Receptor tyrosine-prote 4.3 6.8E+02 0.023 14.7 2.7 17 161-177 14-30 (44)
No 1
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=8.80 E-value=3.4e+02 Score=16.97 Aligned_cols=29 Identities=10% Similarity=-0.024 Sum_probs=22.8
Q ss_pred eccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 045471 66 YDDLPSFTFFVAANAVVSGYLILSLSLSI 94 (185)
Q Consensus 66 f~~~~af~ylv~a~~i~~~Ysllql~~~i 94 (185)
=+|.--|++..+..+++.+|++-.+....
T Consensus 26 ~sd~~Ly~~t~~l~~~g~~~~~y~l~~~~ 54 (59)
T 1v54_J 26 ATDNILYRVTMTLCLGGTLYSLYCLGWAS 54 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCceeHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667788999999999999988776543
No 2
>2yfv_C SCM3, KLLA0F05115P; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140}
Probab=8.40 E-value=91 Score=20.10 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=14.1
Q ss_pred cchhhhhhhhhhhhhHHH
Q 045471 140 KANWFAICQQFNSFCQRI 157 (185)
Q Consensus 140 ~~~W~~vC~~~~~FC~~~ 157 (185)
+-.|..+|+.|++|-++.
T Consensus 35 K~~w~~Ii~KY~~~edqg 52 (63)
T 2yfv_C 35 KRVWSQIIQKYESIDNQG 52 (63)
T ss_dssp HHHHHHHHHHHHSGGGSS
T ss_pred HHHHHHHHHHHhcccCCC
Confidence 346999999999886653
No 3
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=6.77 E-value=2.9e+02 Score=15.56 Aligned_cols=13 Identities=31% Similarity=0.603 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHH
Q 045471 74 FFVAANAVVSGYL 86 (185)
Q Consensus 74 ylv~a~~i~~~Ys 86 (185)
.++++|-++++|=
T Consensus 18 llLaINflVAayY 30 (35)
T 1jb0_X 18 LLLAINFLVAAYY 30 (35)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6788999988884
No 4
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=5.52 E-value=5.7e+02 Score=16.98 Aligned_cols=31 Identities=10% Similarity=-0.025 Sum_probs=24.0
Q ss_pred eeeccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 045471 64 AEYDDLPSFTFFVAANAVVSGYLILSLSLSI 94 (185)
Q Consensus 64 ~~f~~~~af~ylv~a~~i~~~Ysllql~~~i 94 (185)
-.=+|.--|.+.++..+++.+|++-.+....
T Consensus 45 ggrsd~~Ly~~t~~l~~~G~~~~ly~l~~~~ 75 (80)
T 2y69_J 45 GGATDNILYRVTMTLCLGGTLYSLYCLGWAS 75 (80)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCccceeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356777889999999999999988776543
No 5
>3qoe_A Heterocyst differentiation protein; MCSG, PSI biology, structural genomics, midwest center for S genomics, helix-turn-helix; 3.00A {Fischerella thermalis} PDB: 3qod_A
Probab=5.42 E-value=1.5e+02 Score=24.14 Aligned_cols=13 Identities=31% Similarity=0.294 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHH
Q 045471 111 FFDTAMLALLTGS 123 (185)
Q Consensus 111 ~~Dqv~ayLL~sa 123 (185)
.+||++.||-+||
T Consensus 18 AmDqimlyLAFsA 30 (302)
T 3qoe_A 18 AMDQIMLYLAFSA 30 (302)
T ss_dssp HHHHHHHTTSHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7899999998886
No 6
>2lg4_A Aurelin; antimicrobial protein; NMR {Aurelia aurita}
Probab=6.97 E-value=1.5e+02 Score=17.33 Aligned_cols=13 Identities=46% Similarity=1.140 Sum_probs=10.8
Q ss_pred hhhhhhhhhhHHH
Q 045471 145 AICQQFNSFCQRI 157 (185)
Q Consensus 145 ~vC~~~~~FC~~~ 157 (185)
.+|.+|..||+..
T Consensus 10 h~C~~f~e~C~d~ 22 (40)
T 2lg4_A 10 HICESFKSFCKDS 22 (40)
Confidence 5699999999876
No 7
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=4.92 E-value=2.1e+02 Score=19.77 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=15.5
Q ss_pred hCCccchhhhhhhhhhhhhHH
Q 045471 136 KGNAKANWFAICQQFNSFCQR 156 (185)
Q Consensus 136 ~G~~~~~W~~vC~~~~~FC~~ 156 (185)
.|.++.+|..+|.++.+|-.+
T Consensus 73 s~lk~~~f~~l~~~~e~~~~~ 93 (95)
T 3m03_A 73 SGVKKAIFDRLCKQLEKIGQQ 93 (95)
T ss_dssp TCBCHHHHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHHHHh
Confidence 366677899999888776543
No 8
>1emz_A Envelope glycoprotein E1; peptide, transmembrane domain, envelope protein E1, hepatitis C virus, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=4.67 E-value=2.1e+02 Score=15.13 Aligned_cols=15 Identities=33% Similarity=0.733 Sum_probs=7.9
Q ss_pred HHHHHHHhCCccchhhhhh
Q 045471 129 AIVYLAHKGNAKANWFAIC 147 (185)
Q Consensus 129 ~i~~l~~~G~~~~~W~~vC 147 (185)
+++|.+..|| |-|++
T Consensus 9 glayfsm~gn----WaKVl 23 (26)
T 1emz_A 9 GIAYFSMVGN----WAKXX 23 (26)
T ss_dssp HHHHHHHHHH----HHC--
T ss_pred HHHHHHHhhH----Hhhhc
Confidence 4566666555 66665
No 9
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=4.60 E-value=4.2e+02 Score=14.89 Aligned_cols=23 Identities=22% Similarity=0.706 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 045471 160 SLIGSFVGMALLILIIMLCGVAL 182 (185)
Q Consensus 160 Si~lsf~a~~~~~~~s~lSa~~L 182 (185)
+++.+-++.++++++.+.-+..+
T Consensus 9 sIaagVvglll~vii~l~~~~~i 31 (35)
T 1iij_A 9 FIIATVVGVLLFLILVVVVGILI 31 (35)
T ss_dssp HHHHHHHHHHHHHHHTTTTTHHH
T ss_pred EeHHHHHHHHHHHHHHHHhheEE
Confidence 45666666444444444333333
No 10
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=4.32 E-value=6.8e+02 Score=14.69 Aligned_cols=17 Identities=24% Similarity=0.630 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045471 161 LIGSFVGMALLILIIML 177 (185)
Q Consensus 161 i~lsf~a~~~~~~~s~l 177 (185)
++..-++.+++++..+.
T Consensus 14 Ia~~vVGvll~vi~~l~ 30 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVV 30 (44)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 44444443333333333
Done!