Query 045471
Match_columns 185
No_of_seqs 104 out of 442
Neff 6.5
Searched_HMMs 13730
Date Tue Mar 26 00:07:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045471.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045471hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rrza_ a.7.10.1 (A:) Glycogen 15.2 34 0.0025 20.5 1.6 23 136-160 37-59 (66)
2 d1jb0x_ f.23.20.1 (X:) Subunit 7.1 1.3E+02 0.0098 14.7 1.9 14 74-87 12-25 (29)
3 d1puna_ d.113.1.1 (A:) Nucleos 3.8 1.3E+02 0.0093 18.8 0.6 13 2-14 36-48 (129)
4 d2np5a1 a.4.1.9 (A:9-77) Trans 3.8 3.1E+02 0.023 14.9 2.5 23 128-150 9-31 (69)
5 d1vk6a2 d.113.1.4 (A:126-256) 3.7 1E+02 0.0073 19.8 -0.1 14 2-15 32-45 (131)
6 d1ppje2 f.23.12.1 (E:1-69) Iro 3.1 4.7E+02 0.035 15.3 2.9 17 113-129 32-48 (69)
7 d2id3a1 a.4.1.9 (A:13-80) Puta 3.0 3.9E+02 0.028 14.6 2.3 23 128-150 14-36 (68)
8 d2a6ta2 d.113.1.7 (A:95-245) m 2.9 1.2E+02 0.0084 19.8 -0.4 13 2-14 32-44 (151)
9 d2i10a1 a.4.1.9 (A:10-78) Puta 2.7 4.7E+02 0.034 14.2 2.5 21 130-150 10-30 (69)
10 d1irya_ d.113.1.1 (A:) 7,8-dih 2.5 1.6E+02 0.012 19.1 0.0 14 2-15 35-48 (156)
No 1
>d1rrza_ a.7.10.1 (A:) Glycogen synthesis protein GlgS {Escherichia coli [TaxId: 562]}
Probab=15.24 E-value=34 Score=20.49 Aligned_cols=23 Identities=22% Similarity=0.834 Sum_probs=16.0
Q ss_pred hCCccchhhhhhhhhhhhhHHHHHH
Q 045471 136 KGNAKANWFAICQQFNSFCQRISGS 160 (185)
Q Consensus 136 ~G~~~~~W~~vC~~~~~FC~~~~~S 160 (185)
-.+.+-.|. |..|..||.++.-+
T Consensus 37 Mdee~r~WF--c~Ry~~Yc~q~~qa 59 (66)
T d1rrza_ 37 MDEEHRTWF--CARYAWYCQQMMQA 59 (66)
T ss_dssp CCHHHHHHH--HHHHHHHHHHHHHH
T ss_pred CcHHHHHHH--HHHHHHHHHHHHHH
Confidence 334455565 88999999988643
No 2
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=7.09 E-value=1.3e+02 Score=14.66 Aligned_cols=14 Identities=29% Similarity=0.584 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHH
Q 045471 74 FFVAANAVVSGYLI 87 (185)
Q Consensus 74 ylv~a~~i~~~Ysl 87 (185)
-++++|-+++.|-+
T Consensus 12 lllainflvaayyf 25 (29)
T d1jb0x_ 12 LLLAINFLVAAYYF 25 (29)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46678888888854
No 3
>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}
Probab=3.82 E-value=1.3e+02 Score=18.82 Aligned_cols=13 Identities=31% Similarity=0.682 Sum_probs=9.3
Q ss_pred CCcchhhcccCCC
Q 045471 2 KAGAVEIGEAKNS 14 (185)
Q Consensus 2 ~~~~~~~~~~~~~ 14 (185)
-||.+|.||++..
T Consensus 36 PgG~ve~gEs~~~ 48 (129)
T d1puna_ 36 PGGKIEMGETPEQ 48 (129)
T ss_dssp SCCSCTTTSCTTH
T ss_pred CcceecCCCchhH
Confidence 4788888886544
No 4
>d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=3.80 E-value=3.1e+02 Score=14.94 Aligned_cols=23 Identities=17% Similarity=0.063 Sum_probs=17.1
Q ss_pred HHHHHHHHhCCccchhhhhhhhh
Q 045471 128 AAIVYLAHKGNAKANWFAICQQF 150 (185)
Q Consensus 128 ~~i~~l~~~G~~~~~W~~vC~~~ 150 (185)
+++-.+.++|-.++...++|...
T Consensus 9 aa~~l~~~~G~~~~ti~~Ia~~a 31 (69)
T d2np5a1 9 ALFDVAAESGLEGASVREVAKRA 31 (69)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHHH
T ss_pred HHHHHHHHhCccccCHHHHHHHh
Confidence 34556788899888888888654
No 5
>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}
Probab=3.68 E-value=1e+02 Score=19.78 Aligned_cols=14 Identities=43% Similarity=0.598 Sum_probs=9.2
Q ss_pred CCcchhhcccCCCC
Q 045471 2 KAGAVEIGEAKNST 15 (185)
Q Consensus 2 ~~~~~~~~~~~~~~ 15 (185)
-||.+|.||+....
T Consensus 32 pGG~ve~GEt~~~a 45 (131)
T d1vk6a2 32 LAGFVEVGETLEQA 45 (131)
T ss_dssp EEEECCTTCCHHHH
T ss_pred ccCCCcCCCcHHHH
Confidence 37888888765443
No 6
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.13 E-value=4.7e+02 Score=15.26 Aligned_cols=17 Identities=18% Similarity=0.259 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhhhHHH
Q 045471 113 DTAMLALLTGSASAAAA 129 (185)
Q Consensus 113 Dqv~ayLL~saasAA~~ 129 (185)
.+.+.||+..+.+.+.+
T Consensus 32 Rk~fsYl~~g~~~v~~a 48 (69)
T d1ppje2 32 RKGFSYLVTATTTVGVA 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hceehhhhhhhHHHHHH
Confidence 47889988777665543
No 7
>d2id3a1 a.4.1.9 (A:13-80) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=2.96 E-value=3.9e+02 Score=14.57 Aligned_cols=23 Identities=26% Similarity=0.066 Sum_probs=16.3
Q ss_pred HHHHHHHHhCCccchhhhhhhhh
Q 045471 128 AAIVYLAHKGNAKANWFAICQQF 150 (185)
Q Consensus 128 ~~i~~l~~~G~~~~~W~~vC~~~ 150 (185)
+++..+.++|-+.+.+.++|...
T Consensus 14 aa~~l~~~~G~~~~t~~~Ia~~a 36 (68)
T d2id3a1 14 AAGDALAADGFDALDLGEIARRA 36 (68)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHHH
T ss_pred HHHHHHHHhCcccCCHHHHHHHH
Confidence 34556678888888888887653
No 8
>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=2.91 E-value=1.2e+02 Score=19.80 Aligned_cols=13 Identities=15% Similarity=0.322 Sum_probs=8.8
Q ss_pred CCcchhhcccCCC
Q 045471 2 KAGAVEIGEAKNS 14 (185)
Q Consensus 2 ~~~~~~~~~~~~~ 14 (185)
-||.+|.||++..
T Consensus 32 PgG~ie~gEs~~~ 44 (151)
T d2a6ta2 32 PKGKIDKDESDVD 44 (151)
T ss_dssp SEEECCTTCCHHH
T ss_pred CcccccCCCCHHH
Confidence 4788888875443
No 9
>d2i10a1 a.4.1.9 (A:10-78) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=2.71 E-value=4.7e+02 Score=14.20 Aligned_cols=21 Identities=5% Similarity=0.129 Sum_probs=15.6
Q ss_pred HHHHHHhCCccchhhhhhhhh
Q 045471 130 IVYLAHKGNAKANWFAICQQF 150 (185)
Q Consensus 130 i~~l~~~G~~~~~W~~vC~~~ 150 (185)
+-.+.++|-+.+...+||...
T Consensus 10 ~~lf~~~G~~~~ti~~Ia~~a 30 (69)
T d2i10a1 10 MELFWRQGYEGTSITDLTKAL 30 (69)
T ss_dssp HHHHHHHTTTTCCHHHHHHHH
T ss_pred HHHHHHHCcccCCHHHHHHHh
Confidence 456678888888888887553
No 10
>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.53 E-value=1.6e+02 Score=19.14 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=9.1
Q ss_pred CCcchhhcccCCCC
Q 045471 2 KAGAVEIGEAKNST 15 (185)
Q Consensus 2 ~~~~~~~~~~~~~~ 15 (185)
-||.+|.||++.+.
T Consensus 35 PGG~ve~gEt~~~a 48 (156)
T d1irya_ 35 FGGKVQEGETIEDG 48 (156)
T ss_dssp BCCBCCTTCCHHHH
T ss_pred cEeEecCCCCHHHH
Confidence 47888888754433
Done!