Query 045473
Match_columns 186
No_of_seqs 146 out of 1096
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 13:37:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045473.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045473hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3211 Predicted endoplasmic 100.0 4.8E-35 1E-39 227.6 15.5 179 1-181 50-229 (230)
2 TIGR00951 2A43 Lysosomal Cysti 100.0 1.8E-34 4E-39 232.3 18.8 175 1-175 23-220 (220)
3 KOG2913 Predicted membrane pro 99.9 1.2E-25 2.5E-30 184.2 10.1 178 1-180 28-251 (260)
4 KOG3145 Cystine transporter Cy 99.9 2.7E-23 5.9E-28 169.9 7.1 178 1-178 143-359 (372)
5 PF04193 PQ-loop: PQ loop repe 99.5 5.7E-14 1.2E-18 91.1 6.3 58 94-151 2-59 (61)
6 KOG2913 Predicted membrane pro 99.4 6.4E-13 1.4E-17 109.2 10.3 87 93-179 8-94 (260)
7 TIGR00951 2A43 Lysosomal Cysti 99.3 3.4E-11 7.4E-16 97.2 10.8 87 95-181 5-106 (220)
8 smart00679 CTNS Repeated motif 99.1 5.2E-11 1.1E-15 67.3 2.8 32 107-138 1-32 (32)
9 COG4095 Uncharacterized conser 99.0 3.8E-09 8.3E-14 72.2 9.3 85 93-178 4-88 (89)
10 PF03083 MtN3_slv: Sugar efflu 98.8 3.2E-09 6.9E-14 73.4 3.0 83 95-178 4-86 (87)
11 KOG1623 Multitransmembrane pro 98.7 4.4E-08 9.5E-13 79.7 8.0 172 2-176 29-209 (243)
12 PHA02246 hypothetical protein 98.5 3.6E-06 7.9E-11 63.6 12.9 162 3-176 26-191 (192)
13 PF04193 PQ-loop: PQ loop repe 98.5 1.1E-07 2.3E-12 61.4 3.0 40 1-40 21-60 (61)
14 KOG3145 Cystine transporter Cy 98.5 3.7E-08 8E-13 81.6 0.9 89 95-183 125-232 (372)
15 smart00679 CTNS Repeated motif 98.0 1.6E-06 3.4E-11 48.6 0.6 26 1-26 7-32 (32)
16 KOG3211 Predicted endoplasmic 97.8 0.00014 2.9E-09 57.7 8.6 82 94-175 31-112 (230)
17 KOG1623 Multitransmembrane pro 97.8 2.3E-05 5E-10 63.9 3.4 87 93-179 8-94 (243)
18 KOG3106 ER lumen protein retai 97.3 0.0036 7.8E-08 49.2 10.1 161 1-163 20-190 (212)
19 PF00810 ER_lumen_recept: ER l 97.2 0.033 7.2E-07 42.3 14.4 132 9-140 1-139 (147)
20 COG5196 ERD2 ER lumen protein 96.9 0.14 3E-06 39.8 15.6 164 2-166 21-195 (214)
21 PF03083 MtN3_slv: Sugar efflu 96.0 0.004 8.6E-08 42.7 1.8 65 1-66 22-86 (87)
22 COG4095 Uncharacterized conser 95.0 0.13 2.8E-06 35.4 6.3 40 2-41 25-65 (89)
23 PHA02246 hypothetical protein 88.6 0.63 1.4E-05 35.6 3.6 50 97-146 8-57 (192)
24 KOG2489 Transmembrane protein 86.2 0.65 1.4E-05 41.8 2.9 33 6-38 345-377 (592)
25 KOG3106 ER lumen protein retai 70.6 16 0.00034 29.1 5.9 40 106-145 13-52 (212)
26 PF07578 LAB_N: Lipid A Biosyn 68.2 32 0.0007 22.8 6.4 61 98-160 2-62 (72)
27 PF00810 ER_lumen_recept: ER l 62.0 31 0.00067 26.1 5.9 24 121-144 1-24 (147)
28 KOG0828 Predicted E3 ubiquitin 57.4 1.2E+02 0.0027 27.7 9.5 50 90-141 446-495 (636)
29 PF05602 CLPTM1: Cleft lip and 47.7 7.7 0.00017 34.5 0.6 49 118-166 326-374 (438)
30 PF03650 MPC: Uncharacterised 41.8 61 0.0013 23.7 4.4 62 119-180 39-101 (119)
31 PF05875 Ceramidase: Ceramidas 39.4 2.1E+02 0.0045 23.3 16.0 48 97-144 140-192 (262)
32 PF07213 DAP10: DAP10 membrane 38.9 74 0.0016 21.5 4.1 7 150-156 32-38 (79)
33 PHA00726 hypothetical protein 37.5 56 0.0012 22.4 3.4 26 158-183 10-35 (89)
34 PRK10692 hypothetical protein; 36.6 1.4E+02 0.0031 20.6 5.3 34 5-38 1-34 (92)
35 PF10762 DUF2583: Protein of u 32.3 1.7E+02 0.0037 20.1 5.1 34 5-38 1-34 (89)
36 PF12046 DUF3529: Protein of u 28.2 1.4E+02 0.0031 23.2 4.8 12 172-183 124-135 (173)
37 PF15102 TMEM154: TMEM154 prot 28.2 26 0.00057 26.5 0.7 21 162-182 70-90 (146)
38 PF02009 Rifin_STEVOR: Rifin/s 25.1 71 0.0015 27.1 2.8 25 157-181 264-288 (299)
39 PF12676 DUF3796: Protein of u 24.4 2.1E+02 0.0046 20.7 4.9 56 125-180 59-114 (118)
40 COG1585 Membrane protein impli 24.1 2.5E+02 0.0055 20.9 5.4 48 128-177 24-71 (140)
41 PRK04125 murein hydrolase regu 23.4 2.4E+02 0.0052 21.2 5.1 34 150-184 91-127 (141)
42 PF06432 GPI2: Phosphatidylino 23.2 4.4E+02 0.0095 21.9 7.6 38 95-132 194-231 (282)
43 PF05915 DUF872: Eukaryotic pr 21.9 3.1E+02 0.0068 19.7 6.3 62 110-177 34-103 (115)
44 PF05656 DUF805: Protein of un 21.8 2.9E+02 0.0062 19.2 9.9 41 95-135 45-85 (120)
45 COG3952 Predicted membrane pro 21.6 3.2E+02 0.0069 19.6 10.1 67 95-163 27-93 (113)
No 1
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=100.00 E-value=4.8e-35 Score=227.62 Aligned_cols=179 Identities=33% Similarity=0.507 Sum_probs=159.7
Q ss_pred CchhcccccccccchHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHhHHhccCCcchhHHHHHHHHHHH
Q 045473 1 ILKILKHRSASGISATTFELEVVAATIGLGYSIQKGIPFSAYGEVFFILIQGLILVAITYYYSQPVGTATWIRALLYCAI 80 (186)
Q Consensus 1 I~~i~r~kS~~GlS~~~l~l~l~g~~~~~~y~~~~~~p~~~y~e~~~~~~q~~il~~~~~~y~~~~~~~~~~~~~~~~~~ 80 (186)
|.||..+||++|+|..++.+|++|++..+.||+.+|+||++|||.+++++|+++++.+++||+.+... +..+..+.+.
T Consensus 50 I~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~~~g~pFss~gE~~fLl~Q~vili~~if~f~~~~~~--~v~~l~~~~~ 127 (230)
T KOG3211|consen 50 IMKIRAAKSARGLSVVSLLLELVGYTVTLSYSYTSGYPFSSYGEYPFLLLQAVILILCIFHFSGQTVT--VVQFLGYIAL 127 (230)
T ss_pred HHHHHhhcccccccHHHHHHHHHHHHheeeehhhcCCCchhHHHHHHHHHHHHHHHHHHHHhccceee--hhhHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999854432 2223333332
Q ss_pred -HHHHhhCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCcccHHHHHHHHhhhHHHHHHHHhccCChHHHHHHHH
Q 045473 81 -APTILAGQINPVLFETIYACQHITFLSARVPQIWKNFKNKSTGQLSFLTCLMSFGGAMVRVFTSIQEKAPTNVVMGSTM 159 (186)
Q Consensus 81 -~~~l~~~~~~~~~~~~lg~~~~~~~~~s~iPQI~~n~r~kst~glS~~~~~l~~~G~~~~~~~~~~~~~~~~~l~~~~~ 159 (186)
...+.+...|.++++.....+.++...+|+||+++|||+|+||++|.+++++.+.|+.+|++|.++|++|+.++.++.+
T Consensus 128 v~~~~~sk~~p~~~~~L~~~~~l~i~v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARiftsiq~t~d~~mll~~v~ 207 (230)
T KOG3211|consen 128 VVSVLASKALPLWIITLAQNLCLPIVVVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTSIQETGDFLMLLRFVI 207 (230)
T ss_pred HHHHHHHhhhhHHHHHHHHhcCchhhhHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHHHHhcCChhhHHHHHH
Confidence 2334456689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcc
Q 045473 160 GALMNGIVLSQMILYQKPEDKK 181 (186)
Q Consensus 160 ~~~l~~~i~~Q~~~Y~~~~~~~ 181 (186)
+.++|+.+..|.+.||++..+.
T Consensus 208 s~~~Ng~i~aq~l~Y~s~~~~~ 229 (230)
T KOG3211|consen 208 SLALNGLITAQVLRYWSTAIKA 229 (230)
T ss_pred HHHHhHHHHHHHHHHHhcCCCC
Confidence 9999999999999999866543
No 2
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=100.00 E-value=1.8e-34 Score=232.27 Aligned_cols=175 Identities=25% Similarity=0.367 Sum_probs=147.0
Q ss_pred CchhcccccccccchHHHHHHHHHHHHHHHH--------HhhcCCchhhHH---HHHHHHHHHHHHHH----hHHhccCC
Q 045473 1 ILKILKHRSASGISATTFELEVVAATIGLGY--------SIQKGIPFSAYG---EVFFILIQGLILVA----ITYYYSQP 65 (186)
Q Consensus 1 I~~i~r~kS~~GlS~~~l~l~l~g~~~~~~y--------~~~~~~p~~~y~---e~~~~~~q~~il~~----~~~~y~~~ 65 (186)
|+||+|+||++|+|++|+.+|+.|+++..+| +..+++|+..|+ |.+++.+|++++.. |+.+|+++
T Consensus 23 i~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~~~~~~~~~v~~edl~~ai~~~il~~l~~~q~~~~~~~ 102 (220)
T TIGR00951 23 IIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITNEFPLSSPGVTQNDVFFTLHAILICFIVLHQCGDYERG 102 (220)
T ss_pred HHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccCCCcHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 5799999999999999999999999999999 456789999999 99999888876655 44445443
Q ss_pred cch-h-HHH------HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCcccHHHHHHHHhhh
Q 045473 66 VGT-A-TWI------RALLYCAIAPTILAGQINPVLFETIYACQHITFLSARVPQIWKNFKNKSTGQLSFLTCLMSFGGA 137 (186)
Q Consensus 66 ~~~-~-~~~------~~~~~~~~~~~l~~~~~~~~~~~~lg~~~~~~~~~s~iPQI~~n~r~kst~glS~~~~~l~~~G~ 137 (186)
..+ . +.. ....+++....+..+..|.+.++.++.++.++.+++++||+++|||||||+|+|+.++++++.|+
T Consensus 103 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~iki~is~ikyiPQi~~Ny~~ksT~glSi~~i~Ld~~G~ 182 (220)
T TIGR00951 103 WQRVSNPWILRILVALLACFATLLVALLSPITPLAFVTMLSYIKVAVTLVKYFPQAATNYHNKSTGQLSIITVFLDFTGL 182 (220)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCcCCHHHHHHHHHHH
Confidence 221 1 111 11122222333445678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhc
Q 045473 138 MVRVFTSIQEKAPTNVVMGSTMGALMNGIVLSQMILYQ 175 (186)
Q Consensus 138 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~Q~~~Y~ 175 (186)
+.|++++.+|++|+.++..+.+++++|.+++.|+++||
T Consensus 183 lqri~ts~~~~gd~~~l~~~~~s~~~n~i~~~Q~~~y~ 220 (220)
T TIGR00951 183 LQRIFQSVNETGDPLKAGLFVVSSLFNGLFAAQVFFYW 220 (220)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999996
No 3
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=99.93 E-value=1.2e-25 Score=184.24 Aligned_cols=178 Identities=18% Similarity=0.191 Sum_probs=139.7
Q ss_pred CchhcccccccccchHHHHHHHHHHHHHHHHHhhcC-CchhhHHHHHHHHHHHHHHHHhHHhccCCcc---------hh-
Q 045473 1 ILKILKHRSASGISATTFELEVVAATIGLGYSIQKG-IPFSAYGEVFFILIQGLILVAITYYYSQPVG---------TA- 69 (186)
Q Consensus 1 I~~i~r~kS~~GlS~~~l~l~l~g~~~~~~y~~~~~-~p~~~y~e~~~~~~q~~il~~~~~~y~~~~~---------~~- 69 (186)
|++|+|+||+||+|+.|+..|++|+++++.|+...+ .|.+.+. .++++++|.++..|+.||....+ .+
T Consensus 28 i~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~~~~~~~~~-~~yy~~~d~~l~~q~~yy~~~~~~~pll~~~s~~s 106 (260)
T KOG2913|consen 28 IIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQPLGSTLKVQ-AVYYTLADSVLFVQCLYYGNIYPREPLLPVPSFRS 106 (260)
T ss_pred HHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhcccchhHHHH-HHHHHHHHHHHHHHHHhcchhcccCccccccchhh
Confidence 679999999999999999999999999999999876 6776665 78899999999999999976544 10
Q ss_pred ---------------------HHHH-HHHHHH---HHHHH--hh----CCCC----hHHHHHHHHHHHHHHHhhhhhHHH
Q 045473 70 ---------------------TWIR-ALLYCA---IAPTI--LA----GQIN----PVLFETIYACQHITFLSARVPQIW 114 (186)
Q Consensus 70 ---------------------~~~~-~~~~~~---~~~~l--~~----~~~~----~~~~~~lg~~~~~~~~~s~iPQI~ 114 (186)
+|.. ...+.+ ...+. .. .... .....++|+++.+++..+|+|||+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~ilG~l~a~ly~~~rIPQI~ 186 (260)
T KOG2913|consen 107 LLGGLEALLILSIKLFSPRFVKWPVVALGFLAIVFLICGAAYESLLRAVRVNGLEIDSLGAILGSLSALLYLGARIPQII 186 (260)
T ss_pred hhcchHHHHHHHhhccCcchhhccchhhhhHHHHHHHHHHHhhccccccccchhhhcchHHHHHHHHHHHHcccccchhh
Confidence 0000 000000 00000 00 0011 123457999999999999999999
Q ss_pred HHHHhCCCCcccHHHHHHHHhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 045473 115 KNFKNKSTGQLSFLTCLMSFGGAMVRVFTSIQEKAPTNVVMGSTMGALMNGIVLSQMILYQKPEDK 180 (186)
Q Consensus 115 ~n~r~kst~glS~~~~~l~~~G~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~Q~~~Y~~~~~~ 180 (186)
+|||+||++|+|+.++.+...||..+..+.- ...+.||+.+...+..+|+.++.|+++||+..++
T Consensus 187 ~n~~~~s~eGls~~~F~~~~~~n~~y~~s~~-~~~n~~w~~~~~~~~~~D~~~~~q~~~~~~~~~~ 251 (260)
T KOG2913|consen 187 LNHLRKSTEGLSLLAFAFNSLGNTTYILSSY-LVTNLPWLVDSKGTIYLDIFIFLQFFNYRASKAQ 251 (260)
T ss_pred hhhccCccchhHHHHHHHHHccccccccccc-cccCCcccccCCcchhHHHHHHHHHHHhhccccc
Confidence 9999999999999999999999999999822 3568899999999999999999999999876533
No 4
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=99.88 E-value=2.7e-23 Score=169.93 Aligned_cols=178 Identities=15% Similarity=0.200 Sum_probs=131.5
Q ss_pred CchhcccccccccchHHHHHHHHHHHHHHHHHhhc----------------CCchhhHHH---HHHHHHHHHHHHHhHHh
Q 045473 1 ILKILKHRSASGISATTFELEVVAATIGLGYSIQK----------------GIPFSAYGE---VFFILIQGLILVAITYY 61 (186)
Q Consensus 1 I~~i~r~kS~~GlS~~~l~l~l~g~~~~~~y~~~~----------------~~p~~~y~e---~~~~~~q~~il~~~~~~ 61 (186)
|+.|||+||++|+|+||+.+++.|+..+.++++.. +.|.-+--| ++--++.+++++.||+.
T Consensus 143 ii~N~RrKSv~gLnfDFv~LNl~Gfs~y~ifn~~ly~~~~iq~~y~~~~p~g~~pv~~nDv~fslHa~lmt~Iti~Qc~~ 222 (372)
T KOG3145|consen 143 IILNWRRKSVVGLNFDFVMLNLTGFSAYSIFNFLLYYCPKIQNQYDTSYPLGVPPVTLNDVVFSLHAVLMTVITILQCFF 222 (372)
T ss_pred HHhhhhhcceeccccceeeehhhhhHHHHHHHHHHHhcHHhccceeccCCCCCCccchhhhhhhHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999988742 112212112 23346668899999999
Q ss_pred ccCCcchhHHHHHH----HHHHHHHHHh---hCCC--ChHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCcccHHHHHH
Q 045473 62 YSQPVGTATWIRAL----LYCAIAPTIL---AGQI--NPVLFETIYACQHITFLSARVPQIWKNFKNKSTGQLSFLTCLM 132 (186)
Q Consensus 62 y~~~~~~~~~~~~~----~~~~~~~~l~---~~~~--~~~~~~~lg~~~~~~~~~s~iPQI~~n~r~kst~glS~~~~~l 132 (186)
|++...+..+-.+. ++..+++..+ .... ..+.+..+.++...++++.++||.+.||+||||+|+|+.-+++
T Consensus 223 yeR~~q~vs~~ialgil~i~~~f~~~~~~va~~~~~~wL~f~~~~syiKl~mTliKYiPQa~mN~tRKSt~gwsIgnIlL 302 (372)
T KOG3145|consen 223 YERGWQRVSKGIALGILAIFWLFAVVFMYVAYWYVIRWLAFLNNLSYIKLAMTLIKYIPQAYMNFTRKSTVGWSIGNILL 302 (372)
T ss_pred hhhcccccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcceeccccccccccEEE
Confidence 98765442111111 1111111111 1111 2335567889999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHhc----------cCChHHHHHHHHHHHHHHHHHHHHHH-hcCCC
Q 045473 133 SFGGAMVRVFTSIQE----------KAPTNVVMGSTMGALMNGIVLSQMIL-YQKPE 178 (186)
Q Consensus 133 ~~~G~~~~~~~~~~~----------~~~~~~l~~~~~~~~l~~~i~~Q~~~-Y~~~~ 178 (186)
++.|+.+++++.+.+ -+|+.....+.+++++|.+.+.|++. |++++
T Consensus 303 DfTGG~~slLQMilQ~~N~~sw~~f~gnp~KfGLg~vSi~FdiiFm~QhyVly~~~~ 359 (372)
T KOG3145|consen 303 DFTGGTASLLQMILQSSNDNSWDTFYGNPGKFGLGLVSIFFDIIFMMQHYVLYPRGH 359 (372)
T ss_pred EecccHHHHHHHHHHHhccccHHHHhcCchhhhhhhHHHHHHHHHHhhheeEecccc
Confidence 999999999997764 35778888899999999999999985 44443
No 5
>PF04193 PQ-loop: PQ loop repeat
Probab=99.50 E-value=5.7e-14 Score=91.06 Aligned_cols=58 Identities=31% Similarity=0.390 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHhCCCCcccHHHHHHHHhhhHHHHHHHHhccCCh
Q 045473 94 FETIYACQHITFLSARVPQIWKNFKNKSTGQLSFLTCLMSFGGAMVRVFTSIQEKAPT 151 (186)
Q Consensus 94 ~~~lg~~~~~~~~~s~iPQI~~n~r~kst~glS~~~~~l~~~G~~~~~~~~~~~~~~~ 151 (186)
.+.+|+++.++++++++||+++|||+||++|+|..++.++..|+++++.+.+.+..|+
T Consensus 2 ~~~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~~ 59 (61)
T PF04193_consen 2 SNILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYPF 59 (61)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3578999999999999999999999999999999999999999999999998777665
No 6
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=99.45 E-value=6.4e-13 Score=109.21 Aligned_cols=87 Identities=18% Similarity=0.218 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCcccHHHHHHHHhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHH
Q 045473 93 LFETIYACQHITFLSARVPQIWKNFKNKSTGQLSFLTCLMSFGGAMVRVFTSIQEKAPTNVVMGSTMGALMNGIVLSQMI 172 (186)
Q Consensus 93 ~~~~lg~~~~~~~~~s~iPQI~~n~r~kst~glS~~~~~l~~~G~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~Q~~ 172 (186)
....+|.+++++|.+..+|||++|||+||++|+|+.++..|..|+++++.+...+.+.+...+....-.+.|.+++.|+.
T Consensus 8 ~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~~~~~~~~~~~yy~~~d~~l~~q~~ 87 (260)
T KOG2913|consen 8 LSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQPLGSTLKVQAVYYTLADSVLFVQCL 87 (260)
T ss_pred HHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 44579999999999999999999999999999999999999999999999999888777888889999999999999999
Q ss_pred HhcCCCC
Q 045473 173 LYQKPED 179 (186)
Q Consensus 173 ~Y~~~~~ 179 (186)
||++..+
T Consensus 88 yy~~~~~ 94 (260)
T KOG2913|consen 88 YYGNIYP 94 (260)
T ss_pred hcchhcc
Confidence 9987665
No 7
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=99.28 E-value=3.4e-11 Score=97.19 Aligned_cols=87 Identities=24% Similarity=0.208 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHhCCCCcccHHHHHHHHhhhHHHHHHH--------Hhcc---CCh----HHHHHHHH
Q 045473 95 ETIYACQHITFLSARVPQIWKNFKNKSTGQLSFLTCLMSFGGAMVRVFTS--------IQEK---APT----NVVMGSTM 159 (186)
Q Consensus 95 ~~lg~~~~~~~~~s~iPQI~~n~r~kst~glS~~~~~l~~~G~~~~~~~~--------~~~~---~~~----~~l~~~~~ 159 (186)
..+|+....++.++++||+++|+||||++|+|+.++.++..|..++..+. ..+. .++ ..+.-+.-
T Consensus 5 ~~lG~~~~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~~~~~~~~~v~~edl~~ai~ 84 (220)
T TIGR00951 5 QILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITNEFPLSSPGVTQNDVFFTLH 84 (220)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccCCCcHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999997773 2221 122 35666677
Q ss_pred HHHHHHHHHHHHHHhcCCCCcc
Q 045473 160 GALMNGIVLSQMILYQKPEDKK 181 (186)
Q Consensus 160 ~~~l~~~i~~Q~~~Y~~~~~~~ 181 (186)
.++++.+++.|+.+|.++.++.
T Consensus 85 ~~il~~l~~~q~~~~~~~~~~~ 106 (220)
T TIGR00951 85 AILICFIVLHQCGDYERGWQRV 106 (220)
T ss_pred HHHHHHHHHHHHhhcccccccc
Confidence 7888999999999887654443
No 8
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=99.11 E-value=5.2e-11 Score=67.31 Aligned_cols=32 Identities=41% Similarity=0.545 Sum_probs=29.9
Q ss_pred hhhhhHHHHHHHhCCCCcccHHHHHHHHhhhH
Q 045473 107 SARVPQIWKNFKNKSTGQLSFLTCLMSFGGAM 138 (186)
Q Consensus 107 ~s~iPQI~~n~r~kst~glS~~~~~l~~~G~~ 138 (186)
++++||+++|||+||++|+|+.++++++.|++
T Consensus 1 ~~~~PQi~~~~~~ks~~glS~~~~~l~~~G~~ 32 (32)
T smart00679 1 VSLLPQIIKNYRRKSTEGLSILFVLLWLLGDI 32 (32)
T ss_pred CcchhHHHHHHHcCCcCcCCHHHHHHHHhcCC
Confidence 47899999999999999999999999999974
No 9
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=3.8e-09 Score=72.21 Aligned_cols=85 Identities=19% Similarity=0.184 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCcccHHHHHHHHhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHH
Q 045473 93 LFETIYACQHITFLSARVPQIWKNFKNKSTGQLSFLTCLMSFGGAMVRVFTSIQEKAPTNVVMGSTMGALMNGIVLSQMI 172 (186)
Q Consensus 93 ~~~~lg~~~~~~~~~s~iPQI~~n~r~kst~glS~~~~~l~~~G~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~Q~~ 172 (186)
..++.|++++.+...+.+||..+.+|.|+|+++|+.++.....|...++++.+. .+|.|.+....++..++.+++.-.+
T Consensus 4 ~~~viG~ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygIL-i~~lPii~aN~i~~il~liIl~~kI 82 (89)
T COG4095 4 FIEVIGTIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGIL-INDLPIIIANIISFILSLIILFYKI 82 (89)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHH-HccCcchhHHHHHHHHHHHHHHHHH
Confidence 346799999999999999999999999999999999999999999999888764 4589999999999999999999998
Q ss_pred HhcCCC
Q 045473 173 LYQKPE 178 (186)
Q Consensus 173 ~Y~~~~ 178 (186)
.|..+.
T Consensus 83 ~~~~k~ 88 (89)
T COG4095 83 KYILKA 88 (89)
T ss_pred HHHHhc
Confidence 887543
No 10
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=98.80 E-value=3.2e-09 Score=73.45 Aligned_cols=83 Identities=22% Similarity=0.318 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHhCCCCcccHHHHHHHHhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHh
Q 045473 95 ETIYACQHITFLSARVPQIWKNFKNKSTGQLSFLTCLMSFGGAMVRVFTSIQEKAPTNVVMGSTMGALMNGIVLSQMILY 174 (186)
Q Consensus 95 ~~lg~~~~~~~~~s~iPQI~~n~r~kst~glS~~~~~l~~~G~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~Q~~~Y 174 (186)
.+++.+.+.+...+.+||+++.+|+||+|++|+.+++..+.++..++.+.+. .+|++.++.+....+++...+.-++.|
T Consensus 4 g~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l-~~d~~i~~~N~~g~~~~~~~~~~~~~y 82 (87)
T PF03083_consen 4 GILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGIL-INDWPIIVPNVFGLVLSIIYLVVYYIY 82 (87)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhh-cCCeeEEeeHHHHHHHHHHHHhheEEe
Confidence 4577888888999999999999999999999999999999999999888774 467799999999999999998888888
Q ss_pred cCCC
Q 045473 175 QKPE 178 (186)
Q Consensus 175 ~~~~ 178 (186)
.+++
T Consensus 83 ~~~~ 86 (87)
T PF03083_consen 83 PSKK 86 (87)
T ss_pred CCCC
Confidence 7654
No 11
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=98.74 E-value=4.4e-08 Score=79.67 Aligned_cols=172 Identities=19% Similarity=0.179 Sum_probs=110.2
Q ss_pred chhcccccccccchHHHHHHHHHHHHHHHHHhhcCCc--hhhHHHHHHHHHHHHHHHHhHHhccCCcchhH-H--HHHHH
Q 045473 2 LKILKHRSASGISATTFELEVVAATIGLGYSIQKGIP--FSAYGEVFFILIQGLILVAITYYYSQPVGTAT-W--IRALL 76 (186)
Q Consensus 2 ~~i~r~kS~~GlS~~~l~l~l~g~~~~~~y~~~~~~p--~~~y~e~~~~~~q~~il~~~~~~y~~~~~~~~-~--~~~~~ 76 (186)
.+++|+||+||.|..=.++-+++...-+-|+...... ..+ ...+=..+ ..+=+..+++|.++++.-. + .....
T Consensus 29 ~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~d~llit-IN~~G~~i-e~~Yi~~f~~ya~~k~~~~~~~~~~~~~ 106 (243)
T KOG1623|consen 29 RRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLKVHDYLLIT-INGIGLVI-ETVYISIFLYYAPKKKTVKIVLALVLGV 106 (243)
T ss_pred HHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhccCceEEEE-EehhcHHH-HHHHHHHHheecCchheeEeeehHHHHH
Confidence 5899999999999999999999999999998665422 111 10111222 3334456778876655211 1 11111
Q ss_pred HHHH-HHHHhhCCCChHHHHHHHHHHHH---HHHhhhhhHHHHHHHhCCCCcccHHHHHHHHhhhHHHHHHHHhccCChH
Q 045473 77 YCAI-APTILAGQINPVLFETIYACQHI---TFLSARVPQIWKNFKNKSTGQLSFLTCLMSFGGAMVRVFTSIQEKAPTN 152 (186)
Q Consensus 77 ~~~~-~~~l~~~~~~~~~~~~lg~~~~~---~~~~s~iPQI~~n~r~kst~glS~~~~~l~~~G~~~~~~~~~~~~~~~~ 152 (186)
..+. ......--.++.....+|.+|.. +...+.+--+.+-.|+||+|.++....+..+.-+..+.++.+.- +|.-
T Consensus 107 ~~~~i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~mPf~Ls~a~fl~a~~W~lYGlli-~D~~ 185 (243)
T KOG1623|consen 107 IGLIILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEYMPFPLSFALFLVAVQWLLYGLLI-KDFF 185 (243)
T ss_pred HHHHHHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhhhheecCceeeechHHHHHHHHHHHHHHHHHHHh-cCeE
Confidence 1111 11222112333333445555544 56788888999999999999999999888888888887766644 6666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 045473 153 VVMGSTMGALMNGIVLSQMILYQK 176 (186)
Q Consensus 153 ~l~~~~~~~~l~~~i~~Q~~~Y~~ 176 (186)
..+.+.+..++..+-+..+..|.+
T Consensus 186 IaipN~iG~~l~~~QL~Ly~~y~~ 209 (243)
T KOG1623|consen 186 IAIPNVLGFLLGLIQLILYFKYPK 209 (243)
T ss_pred EEcccHHHHHHHHHHHHHhhhcCC
Confidence 666777777777776666665544
No 12
>PHA02246 hypothetical protein
Probab=98.54 E-value=3.6e-06 Score=63.63 Aligned_cols=162 Identities=16% Similarity=0.109 Sum_probs=100.8
Q ss_pred hhcccccccccchHHHHHHHHHHHHHHHHHhhc-C-Cchhh--HHHHHHHHHHHHHHHHhHHhccCCcchhHHHHHHHHH
Q 045473 3 KILKHRSASGISATTFELEVVAATIGLGYSIQK-G-IPFSA--YGEVFFILIQGLILVAITYYYSQPVGTATWIRALLYC 78 (186)
Q Consensus 3 ~i~r~kS~~GlS~~~l~l~l~g~~~~~~y~~~~-~-~p~~~--y~e~~~~~~q~~il~~~~~~y~~~~~~~~~~~~~~~~ 78 (186)
...+.|+.+|.|-+|.++-...-.+ ..||... + -.||. -|.++.+ -+.+.++..|++++--... ....+.
T Consensus 26 slvk~~nv~GvS~~FWYLi~~tvgi-SfyNlL~T~~~~fqi~svg~nl~l----givcLlv~~~rkkd~f~~~-fiiifS 99 (192)
T PHA02246 26 ALVKAESVKGVSNYFWYLIVATVGI-SFYNLLLTDASVFQIVSVGLNLTL----GIVCLLVASYRKKDYFSIP-FIIVFS 99 (192)
T ss_pred HHhhhcccccHHHHHHHHHHHHHHH-HHHHHHhcCCceEEEeeeehhhhh----hhhheeeehhhccccccch-HHHHHH
Confidence 4578999999999998876554433 3455542 2 33332 2222211 1122344567766543111 111111
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCcccHHHHHHHHhhhHHHHHHHHhccCChHHHHHHH
Q 045473 79 AIAPTILAGQINPVLFETIYACQHITFLSARVPQIWKNFKNKSTGQLSFLTCLMSFGGAMVRVFTSIQEKAPTNVVMGST 158 (186)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~lg~~~~~~~~~s~iPQI~~n~r~kst~glS~~~~~l~~~G~~~~~~~~~~~~~~~~~l~~~~ 158 (186)
.+.+. -.+..++.+.+++.-...+++|||++-||.|+.||-|+..++.-..|-.+-..+.....-+.-.++.-.
T Consensus 100 Lllfl------l~~~~evtQtVat~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m~Lthv~~hIiiTEf 173 (192)
T PHA02246 100 LLLFL------LSDFTALTQTVATITIILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASLIVSMVLTHTYVHIIATEF 173 (192)
T ss_pred HHHHH------HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHHHHHHhhhCCcceeeHHHH
Confidence 11111 122334556677777788999999999999999999999999998887777666665555555666667
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 045473 159 MGALMNGIVLSQMILYQK 176 (186)
Q Consensus 159 ~~~~l~~~i~~Q~~~Y~~ 176 (186)
...++-.+-..|.=+|.|
T Consensus 174 ~N~iLiLiCy~qA~~Ysk 191 (192)
T PHA02246 174 VNFVLILICYLQANYYSR 191 (192)
T ss_pred HHHHHHHHHHHHHhhhcC
Confidence 777777777777777765
No 13
>PF04193 PQ-loop: PQ loop repeat
Probab=98.48 E-value=1.1e-07 Score=61.36 Aligned_cols=40 Identities=33% Similarity=0.431 Sum_probs=37.3
Q ss_pred CchhcccccccccchHHHHHHHHHHHHHHHHHhhcCCchh
Q 045473 1 ILKILKHRSASGISATTFELEVVAATIGLGYSIQKGIPFS 40 (186)
Q Consensus 1 I~~i~r~kS~~GlS~~~l~l~l~g~~~~~~y~~~~~~p~~ 40 (186)
|+||+|+||++|+|+.++.+++.|+++.+.|.+..+.|++
T Consensus 21 i~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~~~ 60 (61)
T PF04193_consen 21 IIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYPFS 60 (61)
T ss_pred HHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 5799999999999999999999999999999999987753
No 14
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=98.48 E-value=3.7e-08 Score=81.56 Aligned_cols=89 Identities=19% Similarity=0.189 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHhCCCCcccHHHHHHHHhhhHHHHHHHHhc---------------cCChHHHH----
Q 045473 95 ETIYACQHITFLSARVPQIWKNFKNKSTGQLSFLTCLMSFGGAMVRVFTSIQE---------------KAPTNVVM---- 155 (186)
Q Consensus 95 ~~lg~~~~~~~~~s~iPQI~~n~r~kst~glS~~~~~l~~~G~~~~~~~~~~~---------------~~~~~~l~---- 155 (186)
+++||+-..-|.+|.-||++.||||||+.|+|.-++.+++.|=..+....+.. .+.+|...
T Consensus 125 ~IvGwvYf~aWSISfYPqii~N~RrKSv~gLnfDFv~LNl~Gfs~y~ifn~~ly~~~~iq~~y~~~~p~g~~pv~~nDv~ 204 (372)
T KOG3145|consen 125 QIVGWVYFVAWSISFYPQIILNWRRKSVVGLNFDFVMLNLTGFSAYSIFNFLLYYCPKIQNQYDTSYPLGVPPVTLNDVV 204 (372)
T ss_pred hhhheeEEEEEeeeechHHHhhhhhcceeccccceeeehhhhhHHHHHHHHHHHhcHHhccceeccCCCCCCccchhhhh
Confidence 57899999999999999999999999999999999999999988875443221 22333332
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcccc
Q 045473 156 GSTMGALMNGIVLSQMILYQKPEDKKEK 183 (186)
Q Consensus 156 ~~~~~~~l~~~i~~Q~~~Y~~~~~~~~~ 183 (186)
-++=.++++.+.+.|++.|.|..++..+
T Consensus 205 fslHa~lmt~Iti~Qc~~yeR~~q~vs~ 232 (372)
T KOG3145|consen 205 FSLHAVLMTVITILQCFFYERGWQRVSK 232 (372)
T ss_pred hhHHHHHHHHHHHHHHHhhhhcccccch
Confidence 2455677889999999999887776554
No 15
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=98.01 E-value=1.6e-06 Score=48.64 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=23.9
Q ss_pred CchhcccccccccchHHHHHHHHHHH
Q 045473 1 ILKILKHRSASGISATTFELEVVAAT 26 (186)
Q Consensus 1 I~~i~r~kS~~GlS~~~l~l~l~g~~ 26 (186)
|++|+|+||++|+|+.++++|+.|++
T Consensus 7 i~~~~~~ks~~glS~~~~~l~~~G~~ 32 (32)
T smart00679 7 IIKNYRRKSTEGLSILFVLLWLLGDI 32 (32)
T ss_pred HHHHHHcCCcCcCCHHHHHHHHhcCC
Confidence 57999999999999999999999873
No 16
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=97.83 E-value=0.00014 Score=57.73 Aligned_cols=82 Identities=20% Similarity=0.121 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHhCCCCcccHHHHHHHHhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH
Q 045473 94 FETIYACQHITFLSARVPQIWKNFKNKSTGQLSFLTCLMSFGGAMVRVFTSIQEKAPTNVVMGSTMGALMNGIVLSQMIL 173 (186)
Q Consensus 94 ~~~lg~~~~~~~~~s~iPQI~~n~r~kst~glS~~~~~l~~~G~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~Q~~~ 173 (186)
...+|+....-.+.-++|||.|.-.+||++|+|...+.+.+.|-...+-+.....-+..-..-+.+-.+-+.+++.++++
T Consensus 31 sklLg~~~va~sl~vKlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~~~g~pFss~gE~~fLl~Q~vili~~if~ 110 (230)
T KOG3211|consen 31 SKLLGLSTVAGSLLVKLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSYTSGYPFSSYGEYPFLLLQAVILILCIFH 110 (230)
T ss_pred HhhhhHHHHHHHHHhhhhHHHHHHhhcccccccHHHHHHHHHHHHheeeehhhcCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 36799999999999999999999999999999999999999998888777775555666677778888888999999999
Q ss_pred hc
Q 045473 174 YQ 175 (186)
Q Consensus 174 Y~ 175 (186)
|+
T Consensus 111 f~ 112 (230)
T KOG3211|consen 111 FS 112 (230)
T ss_pred hc
Confidence 98
No 17
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=97.75 E-value=2.3e-05 Score=63.92 Aligned_cols=87 Identities=16% Similarity=0.229 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCcccHHHHHHHHhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHH
Q 045473 93 LFETIYACQHITFLSARVPQIWKNFKNKSTGQLSFLTCLMSFGGAMVRVFTSIQEKAPTNVVMGSTMGALMNGIVLSQMI 172 (186)
Q Consensus 93 ~~~~lg~~~~~~~~~s~iPQI~~n~r~kst~glS~~~~~l~~~G~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~Q~~ 172 (186)
.+..++.+.+...+.+.+|--++.+||||+||.|..-+++.+.++.+++.+.+...+|...+.-+.+.+++..+-+.-++
T Consensus 8 l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~d~llitIN~~G~~ie~~Yi~~f~ 87 (243)
T KOG1623|consen 8 LFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLKVHDYLLITINGIGLVIETVYISIFL 87 (243)
T ss_pred HHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhccCceEEEEEehhcHHHHHHHHHHHh
Confidence 44566777777788999999999999999999999999999999999999998777788888888888999999999999
Q ss_pred HhcCCCC
Q 045473 173 LYQKPED 179 (186)
Q Consensus 173 ~Y~~~~~ 179 (186)
+|.++++
T Consensus 88 ~ya~~k~ 94 (243)
T KOG1623|consen 88 YYAPKKK 94 (243)
T ss_pred eecCchh
Confidence 9976554
No 18
>KOG3106 consensus ER lumen protein retaining receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.0036 Score=49.20 Aligned_cols=161 Identities=16% Similarity=0.103 Sum_probs=82.3
Q ss_pred CchhcccccccccchHHHHHHHHHHHHHHHHHhhcCCchh---hHHHHHHHHHHHHHHHHhHHhccCCcchhHHHHHHHH
Q 045473 1 ILKILKHRSASGISATTFELEVVAATIGLGYSIQKGIPFS---AYGEVFFILIQGLILVAITYYYSQPVGTATWIRALLY 77 (186)
Q Consensus 1 I~~i~r~kS~~GlS~~~l~l~l~g~~~~~~y~~~~~~p~~---~y~e~~~~~~q~~il~~~~~~y~~~~~~~~~~~~~~~ 77 (186)
|.|++|.||++|+|.-+=.+-.+-++....=.+. .+.+ +-.+..++..+-.++......++....+..=....-|
T Consensus 20 i~Ki~ktrsCaGiSlKSQ~L~Alvf~~Ryldlf~--~~~s~ynt~mki~fl~~t~~ivymi~~k~~~tYd~~~DtFri~~ 97 (212)
T KOG3106|consen 20 ILKIWKTKSCAGISLKSQELFALVFATRYLDLFT--FYESLYNTIMKIAFLASTLWIVYMIRFKLRATYDKEKDTFRIEY 97 (212)
T ss_pred HHHHHhcCccccccchHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCceeEEE
Confidence 5799999999999999876655544443322211 1222 2222333333322222222222211000000000111
Q ss_pred HHHHHHHhhCCCCh--HHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCcccHHHHHHHHhhhHHHHHH----HHhc-cCC
Q 045473 78 CAIAPTILAGQINP--VLFETIYACQHITFLSARVPQIWKNFKNKSTGQLSFLTCLMSFGGAMVRVFT----SIQE-KAP 150 (186)
Q Consensus 78 ~~~~~~l~~~~~~~--~~~~~lg~~~~~~~~~s~iPQI~~n~r~kst~glS~~~~~l~~~G~~~~~~~----~~~~-~~~ 150 (186)
+.+-..+++-..++ .+.+++-..|.-+..++-+||....=|.|.+|-+-.-.++..-.--..++.. ...| ..|
T Consensus 98 llvp~~vlsl~i~~~~t~~eilWtFsiyLEsVaILPQL~~lq~tg~~E~~TahYvfaLG~yR~ly~~~WI~r~~~e~~~~ 177 (212)
T KOG3106|consen 98 LLVPSAVLSLLINHSFTILEILWTFSIYLESVAILPQLFMLQKTGEAETITAHYLFALGLYRALYIANWIYRYVTEDFWD 177 (212)
T ss_pred EehhheeeeeeecCCccHHHHHHHHHHHHHHHHHhHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 11000111111222 2567788889999999999999999999999998877665543332232222 1212 346
Q ss_pred hHHHHHHHHHHHH
Q 045473 151 TNVVMGSTMGALM 163 (186)
Q Consensus 151 ~~~l~~~~~~~~l 163 (186)
+..+++++++.++
T Consensus 178 ~iai~agiVQT~l 190 (212)
T KOG3106|consen 178 PIAIVAGIVQTVL 190 (212)
T ss_pred chHHHHHHHHHHH
Confidence 6666666666544
No 19
>PF00810 ER_lumen_recept: ER lumen protein retaining receptor; InterPro: IPR000133 Proteins resident in the lumen of the endoplasmic reticulum (ER) contain a C-terminal tetrapeptide, commonly known as Lys-Asp-Glu-Leu (KDEL) in mammals and His-Asp-Glu-Leu (HDEL) in yeast (Saccharomyces cerevisiae) that acts as a signal for their retrieval from subsequent compartments of the secretory pathway. The receptor for this signal is a ~26 kDa Golgi membrane protein, initially identified as the ERD2 gene product in S. cerevisiae. The receptor molecule, known variously as the ER lumen protein retaining receptor or the 'KDEL receptor', is believed to cycle between the cis side of the Golgi apparatus and the ER. It has also been characterised in a number of other species, including plants, Plasmodium, Drosophila and mammals. In mammals, 2 highly related forms of the receptor are known. The KDEL receptor is a highly hydrophobic protein of 220 residues; its sequence exhibits 7 hydrophobic regions, all of which have been suggested to traverse the membrane []. More recently, however, it has been suggested that only 6 of these regions are transmembrane (TM), resulting in both N- and C-termini on the cytoplasmic side of the membrane.; GO: 0046923 ER retention sequence binding, 0006621 protein retention in ER lumen, 0016021 integral to membrane
Probab=97.22 E-value=0.033 Score=42.27 Aligned_cols=132 Identities=16% Similarity=0.085 Sum_probs=75.9
Q ss_pred cccccchHHHHHHHHHHHHHHHHHhhcC-C-ch-hhHHHHHHHHHHHHHHHHhHHhccCCcch---h-HHHHHHHHHHHH
Q 045473 9 SASGISATTFELEVVAATIGLGYSIQKG-I-PF-SAYGEVFFILIQGLILVAITYYYSQPVGT---A-TWIRALLYCAIA 81 (186)
Q Consensus 9 S~~GlS~~~l~l~l~g~~~~~~y~~~~~-~-p~-~~y~e~~~~~~q~~il~~~~~~y~~~~~~---~-~~~~~~~~~~~~ 81 (186)
|++|+|.....+-++...+......... + .. .+..+..++..+-.++......|++...+ . +......-+.+.
T Consensus 1 S~~GlSlktq~ly~~vf~~Ryldl~~f~~~~s~y~~~~k~~~i~~s~~iiyli~~~~~~Ty~~~~D~f~~~~li~p~~vL 80 (147)
T PF00810_consen 1 SCSGLSLKTQILYAIVFLTRYLDLFWFESYLSLYNTIMKVFFIVSSLYIIYLIFFKYKSTYDKEIDTFRLEYLIVPCFVL 80 (147)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhheeehhhhhccccchhhhHHHHHHHHH
Confidence 7899999998888888877765542222 1 11 11123333343333332223233322111 1 111111112222
Q ss_pred HHHhhCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCcccHHHHHHHHhhhHHH
Q 045473 82 PTILAGQINPVLFETIYACQHITFLSARVPQIWKNFKNKSTGQLSFLTCLMSFGGAMVR 140 (186)
Q Consensus 82 ~~l~~~~~~~~~~~~lg~~~~~~~~~s~iPQI~~n~r~kst~glS~~~~~l~~~G~~~~ 140 (186)
..+.......++.+++-..+..++.++-+||.....|++.+|.+..-.++.....-+++
T Consensus 81 a~i~~p~~~~~~~ei~wtfSi~LEsvAIlPQL~m~~k~~~ve~ltshYv~~Lg~yR~ly 139 (147)
T PF00810_consen 81 ALIFHPLNSFFFLEILWTFSIYLESVAILPQLFMLQKTGEVENLTSHYVFALGLYRALY 139 (147)
T ss_pred HHHHhccccchHHHHHHHHHHHHHHHHHhHHHHHHHHhcCeeehHHHHHHHHHHHHHHH
Confidence 22222212345778899999999999999999999999999999888777665544444
No 20
>COG5196 ERD2 ER lumen protein retaining receptor [Intracellular trafficking and secretion]
Probab=96.89 E-value=0.14 Score=39.76 Aligned_cols=164 Identities=14% Similarity=0.041 Sum_probs=90.2
Q ss_pred chhcccccccccchHHHHHHHHHHHHHHHHHh--hcCCchhhHHHHHHHHHHHHHHHHhHHhccCCcchhHHHHHHHHHH
Q 045473 2 LKILKHRSASGISATTFELEVVAATIGLGYSI--QKGIPFSAYGEVFFILIQGLILVAITYYYSQPVGTATWIRALLYCA 79 (186)
Q Consensus 2 ~~i~r~kS~~GlS~~~l~l~l~g~~~~~~y~~--~~~~p~~~y~e~~~~~~q~~il~~~~~~y~~~~~~~~~~~~~~~~~ 79 (186)
-++-|.|+++|+|+-.-++-.+-++..-.--+ ..+--.......+|+..|..++...-..|+....++-=.....+..
T Consensus 21 h~ik~tr~csGlSlKtq~Ly~lVfitRYldLf~f~~~slYn~lMki~FI~s~~yI~~lm~~~~r~tYdk~lDtF~i~~ll 100 (214)
T COG5196 21 HKIKRTRSCSGLSLKTQFLYSLVFITRYLDLFDFYARSLYNSLMKILFIGSQVYILFLMRFKYRSTYDKKLDTFNILTLL 100 (214)
T ss_pred HHhhhcceecceehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHhhhhhhhhhhh
Confidence 46789999999999888777766655422111 0000001111234566666665555555544333221011111111
Q ss_pred HHHHHhhCCCCh--HHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCcccHHHHHHHHhhhHHHHHHHHh----c---cCC
Q 045473 80 IAPTILAGQINP--VLFETIYACQHITFLSARVPQIWKNFKNKSTGQLSFLTCLMSFGGAMVRVFTSIQ----E---KAP 150 (186)
Q Consensus 80 ~~~~l~~~~~~~--~~~~~lg~~~~~~~~~s~iPQI~~n~r~kst~glS~~~~~l~~~G~~~~~~~~~~----~---~~~ 150 (186)
+.-.+++-..|. .+.+++-..|.-+..++-+||.++--|.+.||.+-.-.++....=-..++-.-+. + +++
T Consensus 101 ~gsav~slff~~~~tisnvlwtfS~wLESVAILPQL~mLq~~GeteslT~hYvfamgLYRalYip~wI~r~~~~~kk~~~ 180 (214)
T COG5196 101 VGSAVFSLFFTRGGTISNVLWTFSLWLESVAILPQLVMLQEAGETESLTSHYVFAMGLYRALYIPYWILRKVYDIKKTGN 180 (214)
T ss_pred hhhhhheeeecCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeHHHHHHHHHHHHHhhhhHHHHHhhhccccccc
Confidence 111112212232 3667788888899999999999999999999999887776654443333333222 2 234
Q ss_pred hHHHHHHHHHHHHHHH
Q 045473 151 TNVVMGSTMGALMNGI 166 (186)
Q Consensus 151 ~~~l~~~~~~~~l~~~ 166 (186)
.+ +.+++++.++-.=
T Consensus 181 ia-i~aGivQTlLY~D 195 (214)
T COG5196 181 IA-IAAGIVQTLLYLD 195 (214)
T ss_pred ch-hHHHHHHHHHHHH
Confidence 44 4444655554433
No 21
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=96.01 E-value=0.004 Score=42.68 Aligned_cols=65 Identities=20% Similarity=0.216 Sum_probs=47.5
Q ss_pred CchhcccccccccchHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHhHHhccCCc
Q 045473 1 ILKILKHRSASGISATTFELEVVAATIGLGYSIQKGIPFSAYGEVFFILIQGLILVAITYYYSQPV 66 (186)
Q Consensus 1 I~~i~r~kS~~GlS~~~l~l~l~g~~~~~~y~~~~~~p~~~y~e~~~~~~q~~il~~~~~~y~~~~ 66 (186)
+.+++|+||++++|+.......++...=+.|++..+-++.... +..-.+-..+.+..+++|.+++
T Consensus 22 i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~~d~~i~~~-N~~g~~~~~~~~~~~~~y~~~~ 86 (87)
T PF03083_consen 22 IRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILINDWPIIVP-NVFGLVLSIIYLVVYYIYPSKK 86 (87)
T ss_pred HHHHHhCCCCCccceehhHHHhhhccHhhhhhhhcCCeeEEee-HHHHHHHHHHHHhheEEeCCCC
Confidence 3588999999999999999999999999999998774432222 2333444555556677776654
No 22
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=94.95 E-value=0.13 Score=35.44 Aligned_cols=40 Identities=28% Similarity=0.385 Sum_probs=35.9
Q ss_pred chhcccccccccchHHHHHHHHHHHHHHHHHhhcC-Cchhh
Q 045473 2 LKILKHRSASGISATTFELEVVAATIGLGYSIQKG-IPFSA 41 (186)
Q Consensus 2 ~~i~r~kS~~GlS~~~l~l~l~g~~~~~~y~~~~~-~p~~~ 41 (186)
+|++|.||++++|+.++..-..|..+-+.|++.-+ +|.-.
T Consensus 25 iki~ktK~t~~Isl~~fii~~ia~~lwliygILi~~lPii~ 65 (89)
T COG4095 25 IKIIKTKNTASISLPMFIILNIALFLWLIYGILINDLPIII 65 (89)
T ss_pred HHHHhccccccccHHHHHHHHHHHHHHHHHHHHHccCcchh
Confidence 58999999999999999999999999999999865 78543
No 23
>PHA02246 hypothetical protein
Probab=88.58 E-value=0.63 Score=35.62 Aligned_cols=50 Identities=10% Similarity=0.066 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHhCCCCcccHHHHHHHHhhhHHHHHHHHh
Q 045473 97 IYACQHITFLSARVPQIWKNFKNKSTGQLSFLTCLMSFGGAMVRVFTSIQ 146 (186)
Q Consensus 97 lg~~~~~~~~~s~iPQI~~n~r~kst~glS~~~~~l~~~G~~~~~~~~~~ 146 (186)
+..+-..+...+++||.....|.|+.+|.|-.++-+-...-..+.+..+.
T Consensus 8 ~s~~yailit~gYipgL~slvk~~nv~GvS~~FWYLi~~tvgiSfyNlL~ 57 (192)
T PHA02246 8 LSILYAILITVGYIPGLVALVKAESVKGVSNYFWYLIVATVGISFYNLLL 57 (192)
T ss_pred HHHHHHHHHHhhhhhhHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455667788999999999999999999999999888777777666654
No 24
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=86.23 E-value=0.65 Score=41.75 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=27.0
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHhhcCCc
Q 045473 6 KHRSASGISATTFELEVVAATIGLGYSIQKGIP 38 (186)
Q Consensus 6 r~kS~~GlS~~~l~l~l~g~~~~~~y~~~~~~p 38 (186)
++||-+|||.-+++...+..++-..|-+=++..
T Consensus 345 ~rKsmeGLS~rsvl~~~F~s~IIflYllDneTs 377 (592)
T KOG2489|consen 345 KRKSMEGLSVRSVLWRCFSSLIIFLYLLDNETS 377 (592)
T ss_pred cccccccccHHHHHHHHHHHHhhhheeecCCcc
Confidence 689999999999999999988888776555443
No 25
>KOG3106 consensus ER lumen protein retaining receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.63 E-value=16 Score=29.08 Aligned_cols=40 Identities=23% Similarity=0.110 Sum_probs=29.6
Q ss_pred HhhhhhHHHHHHHhCCCCcccHHHHHHHHhhhHHHHHHHH
Q 045473 106 LSARVPQIWKNFKNKSTGQLSFLTCLMSFGGAMVRVFTSI 145 (186)
Q Consensus 106 ~~s~iPQI~~n~r~kst~glS~~~~~l~~~G~~~~~~~~~ 145 (186)
..+-+-=+.|.+|+||++|+|.-+-.+-..==..|.+-.+
T Consensus 13 ~~~i~vLi~Ki~ktrsCaGiSlKSQ~L~Alvf~~Ryldlf 52 (212)
T KOG3106|consen 13 LAAIIVLILKIWKTKSCAGISLKSQELFALVFATRYLDLF 52 (212)
T ss_pred HHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHHHH
Confidence 3344455789999999999999988877666666655444
No 26
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=68.15 E-value=32 Score=22.83 Aligned_cols=61 Identities=16% Similarity=0.191 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHhCCCCcccHHHHHHHHhhhHHHHHHHHhccCChHHHHHHHHH
Q 045473 98 YACQHITFLSARVPQIWKNFKNKSTGQLSFLTCLMSFGGAMVRVFTSIQEKAPTNVVMGSTMG 160 (186)
Q Consensus 98 g~~~~~~~~~s~iPQI~~n~r~kst~glS~~~~~l~~~G~~~~~~~~~~~~~~~~~l~~~~~~ 160 (186)
|.++-.+...-.+-|-+.-=|+|. .-++..++.+.+.|++.-+.+.+. .+|++.+++....
T Consensus 2 G~~gq~lF~~Rf~~QW~~SEk~k~-sv~P~~FW~lSl~Gs~lll~Y~i~-r~DpV~ilgq~~g 62 (72)
T PF07578_consen 2 GFIGQLLFSSRFIVQWIYSEKAKK-SVVPVAFWYLSLIGSLLLLIYAII-RKDPVFILGQSFG 62 (72)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHhcC
Confidence 556666667777788777766663 458999999999999998887775 6677777765443
No 27
>PF00810 ER_lumen_recept: ER lumen protein retaining receptor; InterPro: IPR000133 Proteins resident in the lumen of the endoplasmic reticulum (ER) contain a C-terminal tetrapeptide, commonly known as Lys-Asp-Glu-Leu (KDEL) in mammals and His-Asp-Glu-Leu (HDEL) in yeast (Saccharomyces cerevisiae) that acts as a signal for their retrieval from subsequent compartments of the secretory pathway. The receptor for this signal is a ~26 kDa Golgi membrane protein, initially identified as the ERD2 gene product in S. cerevisiae. The receptor molecule, known variously as the ER lumen protein retaining receptor or the 'KDEL receptor', is believed to cycle between the cis side of the Golgi apparatus and the ER. It has also been characterised in a number of other species, including plants, Plasmodium, Drosophila and mammals. In mammals, 2 highly related forms of the receptor are known. The KDEL receptor is a highly hydrophobic protein of 220 residues; its sequence exhibits 7 hydrophobic regions, all of which have been suggested to traverse the membrane []. More recently, however, it has been suggested that only 6 of these regions are transmembrane (TM), resulting in both N- and C-termini on the cytoplasmic side of the membrane.; GO: 0046923 ER retention sequence binding, 0006621 protein retention in ER lumen, 0016021 integral to membrane
Probab=62.03 E-value=31 Score=26.06 Aligned_cols=24 Identities=21% Similarity=0.070 Sum_probs=22.0
Q ss_pred CCCcccHHHHHHHHhhhHHHHHHH
Q 045473 121 STGQLSFLTCLMSFGGAMVRVFTS 144 (186)
Q Consensus 121 st~glS~~~~~l~~~G~~~~~~~~ 144 (186)
|+.|+|..+..+-+..-++|.+..
T Consensus 1 S~~GlSlktq~ly~~vf~~Ryldl 24 (147)
T PF00810_consen 1 SCSGLSLKTQILYAIVFLTRYLDL 24 (147)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999998877
No 28
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.41 E-value=1.2e+02 Score=27.70 Aligned_cols=50 Identities=16% Similarity=0.140 Sum_probs=31.5
Q ss_pred ChHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCcccHHHHHHHHhhhHHHH
Q 045473 90 NPVLFETIYACQHITFLSARVPQIWKNFKNKSTGQLSFLTCLMSFGGAMVRV 141 (186)
Q Consensus 90 ~~~~~~~lg~~~~~~~~~s~iPQI~~n~r~kst~glS~~~~~l~~~G~~~~~ 141 (186)
|...-.++-.+=.+++-.-++|||..|-+++... +++.+--.+.-.+.|+
T Consensus 446 p~q~r~yf~~iLif~~~SfWIPQIv~Nvvrg~SR--~Pl~w~yIlG~Tv~Rl 495 (636)
T KOG0828|consen 446 PVQFRNYFIPILIFMYYSFWIPQIVANVVRGDSR--KPLHWYYILGMTVTRL 495 (636)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCC--CCcchhhhhhHhHHhh
Confidence 3334445656666666788999999999997333 4444444444455553
No 29
>PF05602 CLPTM1: Cleft lip and palate transmembrane protein 1 (CLPTM1); InterPro: IPR008429 Clefts of the lip and/or palate (CL/P) are some of the most common birth defects. They may be categorised into syndromic or non-syndromic types, with syndromic defects having an underlying chromosomal or teratogenic cause. Around 70% of clefts are non-syndromic and individuals have no typical physical or developmental abnormalities; these clefts generally show polygenetic behaviour and complex inheritance []. Studies have identified regions on chromosomes 19 and 11 which may be involved in non-syndromic cleft lip and palates; this included a novel gene on chromosome 19, cleft lip and palate-associated transmembrane protein 1 (CLPTM1) []. The Poliovirus receptor-related 1 gene (PVRL1), which is located on chromosome 11, has also been shown to associate with non-syndromic cleft lip and palates [, ]. CLPTM1 encodes a transmembrane protein and has strong homology to two Caenorhabditis elegans genes, suggesting that CLPTM1 may belong to a new gene family []. This family also contains the Homo sapiens cisplatin resistance related protein CRR9p which is associated with CDDP-induced apoptosis [].
Probab=47.73 E-value=7.7 Score=34.50 Aligned_cols=49 Identities=20% Similarity=0.225 Sum_probs=38.6
Q ss_pred HhCCCCcccHHHHHHHHhhhHHHHHHHHhccCChHHHHHHHHHHHHHHH
Q 045473 118 KNKSTGQLSFLTCLMSFGGAMVRVFTSIQEKAPTNVVMGSTMGALMNGI 166 (186)
Q Consensus 118 r~kst~glS~~~~~l~~~G~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~ 166 (186)
++||.+|+|..+++..+.-.+.-.++.+-+..++..++..++.++.++.
T Consensus 326 ~~k~~~GlS~rtv~~~~~~~~iIfLYL~D~~ts~lil~~~gig~~ie~W 374 (438)
T PF05602_consen 326 KRKSMEGLSVRTVLWNCFSQIIIFLYLLDNETSWLILVPSGIGLLIEAW 374 (438)
T ss_pred ccCCcccccHHHHHHHHHHHHheeeeEEeCCCcEEeehHhHhHHhHhhe
Confidence 4689999999999999988888777776555677778887777766654
No 30
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=41.84 E-value=61 Score=23.69 Aligned_cols=62 Identities=11% Similarity=0.061 Sum_probs=41.6
Q ss_pred hCCCCcccHHHH-HHHHhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 045473 119 NKSTGQLSFLTC-LMSFGGAMVRVFTSIQEKAPTNVVMGSTMGALMNGIVLSQMILYQKPEDK 180 (186)
Q Consensus 119 ~kst~glS~~~~-~l~~~G~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~Q~~~Y~~~~~~ 180 (186)
+|..|-+|..+- .+.+.|.++.=++......|.....+.......+..-+.=.+.|+...++
T Consensus 39 ~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~~~~~~ 101 (119)
T PF03650_consen 39 KRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFNATTQLYQLYRKLNYQYSQKK 101 (119)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 356666776654 44455555555666677788888888888777777777777777654443
No 31
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Probab=39.43 E-value=2.1e+02 Score=23.28 Aligned_cols=48 Identities=6% Similarity=0.056 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhhhhHHHHH-----HHhCCCCcccHHHHHHHHhhhHHHHHHH
Q 045473 97 IYACQHITFLSARVPQIWKN-----FKNKSTGQLSFLTCLMSFGGAMVRVFTS 144 (186)
Q Consensus 97 lg~~~~~~~~~s~iPQI~~n-----~r~kst~glS~~~~~l~~~G~~~~~~~~ 144 (186)
..+....+....+..-+++. .++|....+-.........|=.+|..--
T Consensus 140 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~~a~~~W~iD~ 192 (262)
T PF05875_consen 140 IAFASLVLLVILRSIYLIRRRVRDACRRRRARRLLLFGLALFLVAFFFWNIDR 192 (262)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCchhhchHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34555566666666666665 5666777777777777777777776554
No 32
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=38.92 E-value=74 Score=21.52 Aligned_cols=7 Identities=14% Similarity=0.496 Sum_probs=3.0
Q ss_pred ChHHHHH
Q 045473 150 PTNVVMG 156 (186)
Q Consensus 150 ~~~~l~~ 156 (186)
+++.+.+
T Consensus 32 s~g~LaG 38 (79)
T PF07213_consen 32 SPGLLAG 38 (79)
T ss_pred CHHHHHH
Confidence 3444444
No 33
>PHA00726 hypothetical protein
Probab=37.49 E-value=56 Score=22.44 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcccc
Q 045473 158 TMGALMNGIVLSQMILYQKPEDKKEK 183 (186)
Q Consensus 158 ~~~~~l~~~i~~Q~~~Y~~~~~~~~~ 183 (186)
-+...+|.+++.-.+.+|+...|+|+
T Consensus 10 ei~l~fD~i~l~~sLLFRKpK~k~~~ 35 (89)
T PHA00726 10 EIVLVFDTIMLTTALLFRKPKPKKVK 35 (89)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchhh
Confidence 46778999999999999986666554
No 34
>PRK10692 hypothetical protein; Provisional
Probab=36.56 E-value=1.4e+02 Score=20.58 Aligned_cols=34 Identities=32% Similarity=0.601 Sum_probs=27.0
Q ss_pred cccccccccchHHHHHHHHHHHHHHHHHhhcCCc
Q 045473 5 LKHRSASGISATTFELEVVAATIGLGYSIQKGIP 38 (186)
Q Consensus 5 ~r~kS~~GlS~~~l~l~l~g~~~~~~y~~~~~~p 38 (186)
.|+|++.=+-=.++.+.++.-+..+.|++.++.|
T Consensus 1 MKRk~a~~~GN~lMglGmv~Mv~gigysi~~~i~ 34 (92)
T PRK10692 1 MKRKNASLLGNVLMGLGLVVMVVGVGYSILNQLP 34 (92)
T ss_pred CcchhhHHHhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3677777777777888888888889999988755
No 35
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=32.30 E-value=1.7e+02 Score=20.12 Aligned_cols=34 Identities=32% Similarity=0.491 Sum_probs=26.7
Q ss_pred cccccccccchHHHHHHHHHHHHHHHHHhhcCCc
Q 045473 5 LKHRSASGISATTFELEVVAATIGLGYSIQKGIP 38 (186)
Q Consensus 5 ~r~kS~~GlS~~~l~l~l~g~~~~~~y~~~~~~p 38 (186)
.|+|++.=+-=.++.+.++.-+..+.|++.++.|
T Consensus 1 MKRk~a~~~GN~lMglGmv~Mv~gigysi~~~~~ 34 (89)
T PF10762_consen 1 MKRKNAFLLGNVLMGLGMVVMVGGIGYSILSQIP 34 (89)
T ss_pred CCchhhHHHhhHHHHHhHHHHHHhHHHHHHHhcc
Confidence 3677777777777888888888888999988755
No 36
>PF12046 DUF3529: Protein of unknown function (DUF3529); InterPro: IPR021919 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 176 to 190 amino acids in length.
Probab=28.20 E-value=1.4e+02 Score=23.24 Aligned_cols=12 Identities=25% Similarity=0.537 Sum_probs=8.6
Q ss_pred HHhcCCCCcccc
Q 045473 172 ILYQKPEDKKEK 183 (186)
Q Consensus 172 ~~Y~~~~~~~~~ 183 (186)
+|||+++.|+|+
T Consensus 124 ~~Yw~kA~R~E~ 135 (173)
T PF12046_consen 124 IFYWQKAGRPEQ 135 (173)
T ss_pred hhhhhcCCCcce
Confidence 578877777765
No 37
>PF15102 TMEM154: TMEM154 protein family
Probab=28.17 E-value=26 Score=26.51 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhcCCCCccc
Q 045473 162 LMNGIVLSQMILYQKPEDKKE 182 (186)
Q Consensus 162 ~l~~~i~~Q~~~Y~~~~~~~~ 182 (186)
++-+.+++-.++|||++.|.+
T Consensus 70 lLLl~vV~lv~~~kRkr~K~~ 90 (146)
T PF15102_consen 70 LLLLSVVCLVIYYKRKRTKQE 90 (146)
T ss_pred HHHHHHHHheeEEeecccCCC
Confidence 333334444556776666554
No 38
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=25.05 E-value=71 Score=27.11 Aligned_cols=25 Identities=8% Similarity=0.265 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcc
Q 045473 157 STMGALMNGIVLSQMILYQKPEDKK 181 (186)
Q Consensus 157 ~~~~~~l~~~i~~Q~~~Y~~~~~~~ 181 (186)
.++.+++-.+|++.++.|||+.+.+
T Consensus 264 aIliIVLIMvIIYLILRYRRKKKmk 288 (299)
T PF02009_consen 264 AILIIVLIMVIIYLILRYRRKKKMK 288 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4444555555556666777644433
No 39
>PF12676 DUF3796: Protein of unknown function (DUF3796); InterPro: IPR024257 This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length.
Probab=24.42 E-value=2.1e+02 Score=20.67 Aligned_cols=56 Identities=13% Similarity=0.014 Sum_probs=27.2
Q ss_pred ccHHHHHHHHhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 045473 125 LSFLTCLMSFGGAMVRVFTSIQEKAPTNVVMGSTMGALMNGIVLSQMILYQKPEDK 180 (186)
Q Consensus 125 lS~~~~~l~~~G~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~Q~~~Y~~~~~~ 180 (186)
-+..+.+-...+.+.-+...+.+..+.....-.+...+.-.+...-..+|++++++
T Consensus 59 a~~af~v~l~~~~ii~l~~~i~~~~~~~~~~i~i~~~i~l~vf~~~~~~ye~~e~~ 114 (118)
T PF12676_consen 59 ASRAFFVALILLFIILLISMIFDNLELITILIAIAFAIALLVFAISYLYYEYREDK 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh
Confidence 44555555555555555555545444433333333333333333444567766555
No 40
>COG1585 Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=24.13 E-value=2.5e+02 Score=20.87 Aligned_cols=48 Identities=10% Similarity=-0.052 Sum_probs=27.6
Q ss_pred HHHHHHHhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 045473 128 LTCLMSFGGAMVRVFTSIQEKAPTNVVMGSTMGALMNGIVLSQMILYQKP 177 (186)
Q Consensus 128 ~~~~l~~~G~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~i~~Q~~~Y~~~ 177 (186)
.++++++.+....+- +......++....+....+..+.......|.++
T Consensus 24 ~~~ll~~g~aA~~vg--~~~l~~~~~~~q~v~f~~lsv~~~~l~rr~~~~ 71 (140)
T COG1585 24 GVFLLWLGLAALAVG--LALLLLLSWWLQLVLFAILSVLLALLGRRFVRR 71 (140)
T ss_pred cHHHHHHHHHHHHHH--HHHHccchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555554444333 333445556667777777777777777766443
No 41
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=23.39 E-value=2.4e+02 Score=21.17 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=15.0
Q ss_pred ChHHHHHHHHHHHHHHHH---HHHHHHhcCCCCccccc
Q 045473 150 PTNVVMGSTMGALMNGIV---LSQMILYQKPEDKKEKK 184 (186)
Q Consensus 150 ~~~~l~~~~~~~~l~~~i---~~Q~~~Y~~~~~~~~~~ 184 (186)
-++.++.-++++++-.+. ..|+ ..+++++++|+|
T Consensus 91 ~~~Il~~ivvSTllvl~vtg~v~~~-l~r~~~~~~~~~ 127 (141)
T PRK04125 91 PVQIIGVIIVATILLLACTGLFSQF-ILGKTEKEKEDK 127 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhccccc
Confidence 345555555555444333 2343 444444444433
No 42
>PF06432 GPI2: Phosphatidylinositol N-acetylglucosaminyltransferase; InterPro: IPR009450 Glycosylphosphatidylinositol (GPI) represents an important anchoring molecule for cell surface proteins. The first step in its synthesis is the transfer of N-acetylglucosamine (GlcNAc) from UDP-N-acetylglucosamine to phosphatidylinositol (PI). This step involves products of three or four genes in both yeast (GPI1, GPI2 and GPI3) and mammals (GPI1, PIG A, PIG H and PIG C), respectively.; GO: 0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity, 0006506 GPI anchor biosynthetic process, 0016021 integral to membrane
Probab=23.17 E-value=4.4e+02 Score=21.90 Aligned_cols=38 Identities=16% Similarity=0.151 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHhCCCCcccHHHHHH
Q 045473 95 ETIYACQHITFLSARVPQIWKNFKNKSTGQLSFLTCLM 132 (186)
Q Consensus 95 ~~lg~~~~~~~~~s~iPQI~~n~r~kst~glS~~~~~l 132 (186)
++...+...+......|......|+++...-...++.+
T Consensus 194 ~VF~lll~ai~lF~l~P~~r~~l~~~s~~~~~~l~~~l 231 (282)
T PF06432_consen 194 HVFALLLFAIQLFALFPIFRRRLRRHSPNAHVVLTFIL 231 (282)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhCchHHHHHHHHH
Confidence 34555666677888999999999999876555544443
No 43
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=21.87 E-value=3.1e+02 Score=19.72 Aligned_cols=62 Identities=6% Similarity=-0.023 Sum_probs=37.8
Q ss_pred hhHHHHHHHhCCCCcccHHHHHHHHhhhHHHHHHHHhc--------cCChHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 045473 110 VPQIWKNFKNKSTGQLSFLTCLMSFGGAMVRVFTSIQE--------KAPTNVVMGSTMGALMNGIVLSQMILYQKP 177 (186)
Q Consensus 110 iPQI~~n~r~kst~glS~~~~~l~~~G~~~~~~~~~~~--------~~~~~~l~~~~~~~~l~~~i~~Q~~~Y~~~ 177 (186)
-|+..+++|.- ...+++.+.|.++-+...+.. ...++.++.+++..+=..--+...++.++.
T Consensus 34 ~P~~k~pwK~I------~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fIPG~Y~~~i~y~a~rg 103 (115)
T PF05915_consen 34 HPKVKIPWKSI------ALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFIPGFYHTRIAYYAWRG 103 (115)
T ss_pred hhhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHhccHHHHHHHHHHHcC
Confidence 56777777754 345566666776665554432 235677777777776666666655555443
No 44
>PF05656 DUF805: Protein of unknown function (DUF805); InterPro: IPR008523 This entry is represented by Lactobacillus phage LBR48, DUF805. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0016021 integral to membrane
Probab=21.76 E-value=2.9e+02 Score=19.24 Aligned_cols=41 Identities=15% Similarity=-0.029 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHhCCCCcccHHHHHHHHh
Q 045473 95 ETIYACQHITFLSARVPQIWKNFKNKSTGQLSFLTCLMSFG 135 (186)
Q Consensus 95 ~~lg~~~~~~~~~s~iPQI~~n~r~kst~glS~~~~~l~~~ 135 (186)
.....+..++.+..-+|++-..-||=|.-|.|.....+...
T Consensus 45 ~~~~~~~~~~~l~~~i~~lal~vRRlhD~G~sg~~~~~~~~ 85 (120)
T PF05656_consen 45 SIFSILFIIFILLLFIPSLALTVRRLHDIGRSGWWILLPFV 85 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchHHHHHH
Confidence 44555666667777789999999999999999997777655
No 45
>COG3952 Predicted membrane protein [Function unknown]
Probab=21.55 E-value=3.2e+02 Score=19.64 Aligned_cols=67 Identities=16% Similarity=0.196 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHhCCCCcccHHHHHHHHhhhHHHHHHHHhccCChHHHHHHHHHHHH
Q 045473 95 ETIYACQHITFLSARVPQIWKNFKNKSTGQLSFLTCLMSFGGAMVRVFTSIQEKAPTNVVMGSTMGALM 163 (186)
Q Consensus 95 ~~lg~~~~~~~~~s~iPQI~~n~r~kst~glS~~~~~l~~~G~~~~~~~~~~~~~~~~~l~~~~~~~~l 163 (186)
..+|++...+...-.+-|-.. -++++..-+...++.+.+.|+..-+.+.+. .+|+..++++....+.
T Consensus 27 ~LiG~~g~~lFt~Rf~VQw~~-se~a~rsv~P~~FW~~sllGg~l~L~Yfi~-~~DpV~Vl~~~~glF~ 93 (113)
T COG3952 27 KLIGFSGQLLFTGRFVVQWLA-SEHANRSVIPVLFWYFSLLGGLLLLSYFIR-RQDPVFVLGQACGLFI 93 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhcCCCcchHHHHHHHHHhhHHHHHHHHH-hcchHHHHHHhhhHHH
Confidence 457887777777666777544 466678889999999999999998777665 7888888877665544
Done!