Query 045473
Match_columns 186
No_of_seqs 146 out of 1096
Neff 7.8
Searched_HMMs 29240
Date Tue Mar 26 00:09:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045473.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045473hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jwa_A Receptor tyrosine-prote 79.1 1.4 4.8E-05 25.6 2.4 36 149-184 9-44 (44)
2 2l2t_A Receptor tyrosine-prote 74.6 3.9 0.00013 23.7 3.4 34 150-183 8-42 (44)
3 2ks1_B Epidermal growth factor 48.2 8.7 0.0003 22.2 1.6 31 152-182 11-42 (44)
4 2knc_A Integrin alpha-IIB; tra 14.2 2.2E+02 0.0075 16.9 4.8 11 169-179 34-44 (54)
5 3qnq_A PTS system, cellobiose- 13.8 1E+02 0.0034 26.3 2.6 32 151-182 398-430 (442)
6 3gia_A Uncharacterized protein 11.9 5.8E+02 0.02 20.5 11.2 13 128-140 374-386 (444)
7 2jln_A MHP1; hydantoin, transp 7.9 6.8E+02 0.023 21.1 5.9 40 123-167 405-444 (501)
8 2knu_A E1_peptide, genome poly 7.4 1.2E+02 0.0042 15.6 0.5 10 103-112 20-29 (29)
9 3l1l_A Arginine/agmatine antip 6.8 9.2E+02 0.032 19.1 10.5 15 130-144 388-402 (445)
10 2l9u_A Receptor tyrosine-prote 5.4 3.1E+02 0.011 14.7 1.5 20 158-177 13-32 (40)
No 1
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=79.07 E-value=1.4 Score=25.60 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=21.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Q 045473 149 APTNVVMGSTMGALMNGIVLSQMILYQKPEDKKEKK 184 (186)
Q Consensus 149 ~~~~~l~~~~~~~~l~~~i~~Q~~~Y~~~~~~~~~~ 184 (186)
...+.+.+..+.+++-.++..-...|.++++.+|||
T Consensus 9 ~~~~~Ia~~vVGvll~vi~~l~~~~~~RRR~~~~kK 44 (44)
T 2jwa_A 9 SPLTSIISAVVGILLVVVLGVVFGILIKRRQQKIRK 44 (44)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCC
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhheehhhhhccC
Confidence 455677777777665555555556776555555443
No 2
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=74.58 E-value=3.9 Score=23.69 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=19.0
Q ss_pred ChHHHHHHHHH-HHHHHHHHHHHHHhcCCCCcccc
Q 045473 150 PTNVVMGSTMG-ALMNGIVLSQMILYQKPEDKKEK 183 (186)
Q Consensus 150 ~~~~l~~~~~~-~~l~~~i~~Q~~~Y~~~~~~~~~ 183 (186)
+.+.+.+..+. ++.-.++..-.++|.+++++++|
T Consensus 8 ~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~k 42 (44)
T 2l2t_A 8 RTPLIAAGVIGGLFILVIVGLTFAVYVRRKSIKKK 42 (44)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred CcceEEEeehHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 44555555555 55555555666677665555544
No 3
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=48.22 E-value=8.7 Score=22.16 Aligned_cols=31 Identities=13% Similarity=0.143 Sum_probs=15.1
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHhcCCCCccc
Q 045473 152 NVVMGSTMG-ALMNGIVLSQMILYQKPEDKKE 182 (186)
Q Consensus 152 ~~l~~~~~~-~~l~~~i~~Q~~~Y~~~~~~~~ 182 (186)
+.+....+. ++.-.++..-.++|.+++++++
T Consensus 11 ~~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~~ 42 (44)
T 2ks1_B 11 PSIATGMVGALLLLLVVALGIGLFMRRRHIVR 42 (44)
T ss_dssp SSSTHHHHHHHHHHHHHHHHHHHHHHTTTCCS
T ss_pred ceEEeehhHHHHHHHHHHHHHHHHhhhhHhhc
Confidence 334444443 4444455555566665444433
No 4
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=14.25 E-value=2.2e+02 Score=16.88 Aligned_cols=11 Identities=0% Similarity=0.165 Sum_probs=4.7
Q ss_pred HHHHHhcCCCC
Q 045473 169 SQMILYQKPED 179 (186)
Q Consensus 169 ~Q~~~Y~~~~~ 179 (186)
..+=.++++.+
T Consensus 34 wK~GFFkR~~~ 44 (54)
T 2knc_A 34 WKVGFFKRNRP 44 (54)
T ss_dssp HHHHHTTTTCC
T ss_pred HHcCcccCCCC
Confidence 33334554443
No 5
>3qnq_A PTS system, cellobiose-specific IIC component; membrane protein, transporter, enzyme IIC, phosphoenolpyruva phosphotransferase system; HET: CBS ZDM MAL CIT; 3.29A {Bacillus cereus}
Probab=13.83 E-value=1e+02 Score=26.32 Aligned_cols=32 Identities=9% Similarity=0.149 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HhcCCCCccc
Q 045473 151 TNVVMGSTMGALMNGIVLSQMI-LYQKPEDKKE 182 (186)
Q Consensus 151 ~~~l~~~~~~~~l~~~i~~Q~~-~Y~~~~~~~~ 182 (186)
+...+..++..+.|..+-.=++ .|+|+..|||
T Consensus 398 ~~~~il~~~~~~i~~~iy~PF~k~~dk~~~~~E 430 (442)
T 3qnq_A 398 ISGVILQLVNFALAFVIYLPFLKIWDKQKIAEE 430 (442)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433444444444544444443 3444433333
No 6
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=11.88 E-value=5.8e+02 Score=20.48 Aligned_cols=13 Identities=15% Similarity=0.003 Sum_probs=5.1
Q ss_pred HHHHHHHhhhHHH
Q 045473 128 LTCLMSFGGAMVR 140 (186)
Q Consensus 128 ~~~~l~~~G~~~~ 140 (186)
....+....++.-
T Consensus 374 ~~~~~~~~~~~~~ 386 (444)
T 3gia_A 374 EIVIFSFIVVLGV 386 (444)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3333444444433
No 7
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=7.93 E-value=6.8e+02 Score=21.12 Aligned_cols=40 Identities=10% Similarity=0.041 Sum_probs=30.2
Q ss_pred CcccHHHHHHHHhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Q 045473 123 GQLSFLTCLMSFGGAMVRVFTSIQEKAPTNVVMGSTMGALMNGIV 167 (186)
Q Consensus 123 ~glS~~~~~l~~~G~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~i 167 (186)
+|+....+..+.+|....+. ..|..++.+..++.++-.++
T Consensus 405 ~g~n~~a~~a~~~G~~~~~~-----~~~~~~~~g~~va~v~Y~~l 444 (501)
T 2jln_A 405 RGVNWVALAVYAVALAVSFL-----TPDLMFVTGLIAALLLHIPA 444 (501)
T ss_dssp TTBCHHHHHHHHHHHHHHHT-----CGGGHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH-----HhhhHHHHHHHHHHHHHHHH
Confidence 68999999999999887755 46778888777776555444
No 8
>2knu_A E1_peptide, genome polyprotein; HCV, pretransmembrane, glycoprotein, envelope protein, transmembrane, membrane protein; NMR {Hepatitis c virus}
Probab=7.39 E-value=1.2e+02 Score=15.62 Aligned_cols=10 Identities=30% Similarity=0.468 Sum_probs=4.9
Q ss_pred HHHHhhhhhH
Q 045473 103 ITFLSARVPQ 112 (186)
Q Consensus 103 ~~~~~s~iPQ 112 (186)
...-++|+||
T Consensus 20 ~~a~~lriPq 29 (29)
T 2knu_A 20 VVAQLLRIPQ 29 (29)
T ss_dssp HHHHHCSCC-
T ss_pred HHHHHHhCCC
Confidence 3445566665
No 9
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=6.82 E-value=9.2e+02 Score=19.15 Aligned_cols=15 Identities=0% Similarity=-0.049 Sum_probs=7.0
Q ss_pred HHHHHhhhHHHHHHH
Q 045473 130 CLMSFGGAMVRVFTS 144 (186)
Q Consensus 130 ~~l~~~G~~~~~~~~ 144 (186)
..+...|.+.-++..
T Consensus 388 ~~~~~~~~~~~~~~~ 402 (445)
T 3l1l_A 388 LAVTTIAFLYCIWAV 402 (445)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555444443
No 10
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=5.44 E-value=3.1e+02 Score=14.74 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 045473 158 TMGALMNGIVLSQMILYQKP 177 (186)
Q Consensus 158 ~~~~~l~~~i~~Q~~~Y~~~ 177 (186)
+...+.-..++.--+.||+.
T Consensus 13 i~gl~vif~~lg~tflywrg 32 (40)
T 2l9u_A 13 IAGLVVIFMMLGGTFLYWRG 32 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCceeEEEcc
Confidence 33333444455555566543
Done!