Query 045473
Match_columns 186
No_of_seqs 146 out of 1096
Neff 7.8
Searched_HMMs 13730
Date Tue Mar 26 00:09:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045473.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045473hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3dtub2 f.17.2.1 (B:30-129) Ba 12.8 1.1E+02 0.008 18.5 3.8 32 147-178 27-58 (100)
2 d3ehbb2 f.17.2.1 (B:1-107) Bac 11.0 1.4E+02 0.0098 18.3 3.8 31 148-178 34-64 (107)
3 d1fftb2 f.17.2.1 (B:27-117) Cy 10.8 18 0.0013 22.2 -0.8 27 154-180 23-49 (91)
4 d2oara1 f.16.1.1 (A:10-118) Ga 7.1 76 0.0055 20.0 1.2 21 153-173 58-78 (109)
5 d1oedb_ f.36.1.1 (B:) Acetylch 3.4 6.3E+02 0.046 16.7 6.2 17 96-112 40-56 (250)
6 d1j4na_ f.19.1.1 (A:) Aquapori 3.3 6.8E+02 0.049 16.9 5.6 17 118-134 162-178 (249)
7 d1r7ma2 d.95.2.1 (A:121-225) D 3.1 2.9E+02 0.021 16.5 1.9 15 12-26 12-26 (105)
8 d1kqfb2 f.23.22.1 (B:246-290) 3.1 3.6E+02 0.026 13.9 1.9 12 163-174 20-31 (45)
9 d1m15a1 a.83.1.1 (A:2-95) Argi 3.0 2.4E+02 0.017 17.1 1.3 22 110-131 31-53 (94)
10 d1pp7u_ a.4.5.44 (U:) 39 kda i 3.0 2.9E+02 0.021 17.3 1.8 21 107-127 7-28 (114)
No 1
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=12.76 E-value=1.1e+02 Score=18.46 Aligned_cols=32 Identities=6% Similarity=0.050 Sum_probs=21.5
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 045473 147 EKAPTNVVMGSTMGALMNGIVLSQMILYQKPE 178 (186)
Q Consensus 147 ~~~~~~~l~~~~~~~~l~~~i~~Q~~~Y~~~~ 178 (186)
+.+|..+.+...+.++.-..++.-.+.||+++
T Consensus 27 ~l~~~v~~i~~~I~~~V~~~l~~~~~~~r~~~ 58 (100)
T d3dtub2 27 WLDGFILVIIAAITIFVTLLILYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 34566677777777777777777777776543
No 2
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=11.01 E-value=1.4e+02 Score=18.33 Aligned_cols=31 Identities=3% Similarity=0.060 Sum_probs=19.6
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 045473 148 KAPTNVVMGSTMGALMNGIVLSQMILYQKPE 178 (186)
Q Consensus 148 ~~~~~~l~~~~~~~~l~~~i~~Q~~~Y~~~~ 178 (186)
.+|..+.+...+.++.-..++.=.+.||+++
T Consensus 34 lh~~v~~i~~~I~~~V~~~~~~~~~~~r~~~ 64 (107)
T d3ehbb2 34 LDHFVLYIITAVTIFVCLLLLICIVRFNRRA 64 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSBTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 3455666666666666666666667776553
No 3
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=10.84 E-value=18 Score=22.19 Aligned_cols=27 Identities=4% Similarity=-0.128 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 045473 154 VMGSTMGALMNGIVLSQMILYQKPEDK 180 (186)
Q Consensus 154 l~~~~~~~~l~~~i~~Q~~~Y~~~~~~ 180 (186)
.++.++.+...+.++.-.+.||+++.+
T Consensus 23 ~i~~iv~v~V~~~~~~~~~ryR~~~~~ 49 (91)
T d1fftb2 23 GLMLIVVIPAILMAVGFAWKYRASNKD 49 (91)
T ss_dssp HHTTTTTTHHHHHHHTTTTTTTTSTTT
T ss_pred HHHHHHHHHHHHHHHhhheeeeccCCc
Confidence 333444444455555555667665443
No 4
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=7.15 E-value=76 Score=20.01 Aligned_cols=21 Identities=10% Similarity=0.210 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 045473 153 VVMGSTMGALMNGIVLSQMIL 173 (186)
Q Consensus 153 ~l~~~~~~~~l~~~i~~Q~~~ 173 (186)
.-.+..++.+.|.+++.-.+|
T Consensus 58 i~~G~fi~a~InFlIiA~vv~ 78 (109)
T d2oara1 58 IDLNVLLSAAINFFLIAFAVY 78 (109)
T ss_dssp ECHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777665443
No 5
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=3.39 E-value=6.3e+02 Score=16.67 Aligned_cols=17 Identities=18% Similarity=0.413 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhhhhhH
Q 045473 96 TIYACQHITFLSARVPQ 112 (186)
Q Consensus 96 ~lg~~~~~~~~~s~iPQ 112 (186)
+++..-..+.....+|.
T Consensus 40 lL~~~~~~~~v~~~~P~ 56 (250)
T d1oedb_ 40 LLAVTVFLLLLADKVPE 56 (250)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 34444444556666674
No 6
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.33 E-value=6.8e+02 Score=16.91 Aligned_cols=17 Identities=18% Similarity=0.159 Sum_probs=9.6
Q ss_pred HhCCCCcccHHHHHHHH
Q 045473 118 KNKSTGQLSFLTCLMSF 134 (186)
Q Consensus 118 r~kst~glS~~~~~l~~ 134 (186)
|+|..++..+..+.+..
T Consensus 162 ~~~~~~~~~p~~ig~~v 178 (249)
T d1j4na_ 162 RRRDLGGSGPLAIGFSV 178 (249)
T ss_dssp SCCCCCSCHHHHHHHHH
T ss_pred ccCCCCCCchhHHHHHH
Confidence 45566666566555544
No 7
>d1r7ma2 d.95.2.1 (A:121-225) DNA endonuclease I-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.14 E-value=2.9e+02 Score=16.53 Aligned_cols=15 Identities=0% Similarity=-0.015 Sum_probs=13.1
Q ss_pred ccchHHHHHHHHHHH
Q 045473 12 GISATTFELEVVAAT 26 (186)
Q Consensus 12 GlS~~~l~l~l~g~~ 26 (186)
-|++-.++.|.++|-
T Consensus 12 ~Ltp~~LA~W~MDDG 26 (105)
T d1r7ma2 12 YLTPMSLAYWFMDDG 26 (105)
T ss_dssp HCCHHHHHHHHHHHE
T ss_pred hCCHHHHHheEecCC
Confidence 488999999999995
No 8
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=3.08 E-value=3.6e+02 Score=13.92 Aligned_cols=12 Identities=8% Similarity=0.163 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHh
Q 045473 163 MNGIVLSQMILY 174 (186)
Q Consensus 163 l~~~i~~Q~~~Y 174 (186)
+-.+.+.-++.|
T Consensus 20 ~~~~~~~~~fHY 31 (45)
T d1kqfb2 20 FIATFAGLIFHY 31 (45)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 344445555555
No 9
>d1m15a1 a.83.1.1 (A:2-95) Arginine kinase, N-domain {Horseshoe crab (Limulus polyphemus) [TaxId: 6850]}
Probab=3.00 E-value=2.4e+02 Score=17.05 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=16.8
Q ss_pred hhHHHHHHHhCCCC-cccHHHHH
Q 045473 110 VPQIWKNFKNKSTG-QLSFLTCL 131 (186)
Q Consensus 110 iPQI~~n~r~kst~-glS~~~~~ 131 (186)
-|++++.+|+|.|. |.++.-++
T Consensus 31 T~ev~~~lk~k~T~~G~tl~~~I 53 (94)
T d1m15a1 31 TKDVFDSIKNKKTGMGATLLDVI 53 (94)
T ss_dssp CHHHHHHHTTCBCTTCCBHHHHH
T ss_pred CHHHHHHHhcCCCCCCCcHHHHH
Confidence 49999999999876 66665544
No 10
>d1pp7u_ a.4.5.44 (U:) 39 kda initiator binding protein, IBP39, N-terminal domain {Trichomonas vaginalis [TaxId: 5722]}
Probab=3.00 E-value=2.9e+02 Score=17.28 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=14.3
Q ss_pred hhhh-hHHHHHHHhCCCCcccH
Q 045473 107 SARV-PQIWKNFKNKSTGQLSF 127 (186)
Q Consensus 107 ~s~i-PQI~~n~r~kst~glS~ 127 (186)
.+++ |++...+|+|+...-+.
T Consensus 7 ~~~ip~~i~~~l~kr~s~~~~~ 28 (114)
T d1pp7u_ 7 TSRLPPEIVAALKRKSSRDPNS 28 (114)
T ss_dssp HTTSCHHHHHHHHSCCCSSGGG
T ss_pred hhhCCHHHHHHHHHhhCCCccC
Confidence 3455 57888888888875443
Done!