BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045474
(391 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P02|A Chain A, Crystal Structure Of The Alpha Subunit Of Human S-
Adenosylmethionine Synthetase 2
Length = 396
Score = 474 bits (1220), Expect = e-134, Method: Compositional matrix adjust.
Identities = 236/385 (61%), Positives = 289/385 (75%), Gaps = 7/385 (1%)
Query: 3 TFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCAKTNMVMVFGEITTKAK 62
TFLFTSESV EGHPDK+CDQISDA+LDA L+QDP++KVACET AKT M+++ GEIT++A
Sbjct: 18 TFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAA 77
Query: 63 VDYEKVVRDTCRGIGFVSADVGLDADKCKVLVNIEEQSPEIAQSVHGNLSKRPEEIGAGD 122
VDY+KVVR+ + IG+ + G D C VLV +E+QSP+IAQ VH L + E+IGAGD
Sbjct: 78 VDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGVH--LDRNEEDIGAGD 135
Query: 123 QGHMFGYATDETPELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGA 182
QG MFGYATDET E MPLT+VLA KL A+L E+R+N T PWLRPD KTQVTV+Y + GA
Sbjct: 136 QGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVQYMQDRGA 195
Query: 183 MVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDEKTIFHLNPSGRFVIGG 242
++P RVHT++IS QHDE V +++ + LKE VIK V+PA +LDE TI+HL PSGRFVIGG
Sbjct: 196 VLPIRVHTIVISVQHDEEVCLDEMRDALKEKVIKAVVPAKYLDEDTIYHLQPSGRFVIGG 255
Query: 243 PHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRC 302
P GDAGLTGRKII+DTY KD TKVDRSAAY R AKS+V GL RR
Sbjct: 256 PQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRV 315
Query: 303 LVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENFDFRPGMIAINLDLKRGGNFRY 362
LVQVSYAIGV PLS+ + YGT + S++++L ++K+NFD RPG+I +LDLK+ Y
Sbjct: 316 LVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKKP---IY 372
Query: 363 QKTAACGHFGRDDPDFTWETVKLLK 387
Q+TAA GHFGRD F WE K LK
Sbjct: 373 QRTAAYGHFGRD--SFPWEVPKKLK 395
>pdb|1QM4|A Chain A, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1QM4|B Chain B, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1O90|A Chain A, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1O90|B Chain B, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1O92|A Chain A, Methionine Adenosyltransferase Complexed With Adp And A
L-Methionine Analogous
pdb|1O92|B Chain B, Methionine Adenosyltransferase Complexed With Adp And A
L-Methionine Analogous
pdb|1O93|A Chain A, Methionine Adenosyltransferase Complexed With Atp And A
L-Methionine Analogous
pdb|1O93|B Chain B, Methionine Adenosyltransferase Complexed With Atp And A
L-Methionine Analogous
pdb|1O9T|B Chain B, Methionine Adenosyltransferase Complexed With Both
Substrates Atp And Methionine
pdb|1O9T|A Chain A, Methionine Adenosyltransferase Complexed With Both
Substrates Atp And Methionine
Length = 396
Score = 461 bits (1186), Expect = e-130, Method: Compositional matrix adjust.
Identities = 228/383 (59%), Positives = 284/383 (74%), Gaps = 7/383 (1%)
Query: 4 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCAKTNMVMVFGEITTKAKV 63
F+FTSESV EGHPDK+CDQISDA+LDA L+QDP +KVACET KT MV++ GEIT+ A +
Sbjct: 19 FMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSMAMI 78
Query: 64 DYEKVVRDTCRGIGFVSADVGLDADKCKVLVNIEEQSPEIAQSVHGNLSKRPEEIGAGDQ 123
DY++VVRDT + IG+ + G D C VLV +E+QSP+IAQ VH L + E++GAGDQ
Sbjct: 79 DYQRVVRDTIKHIGYDDSAKGFDFKTCNVLVALEQQSPDIAQCVH--LDRNEEDVGAGDQ 136
Query: 124 GHMFGYATDETPELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAM 183
G MFGYATDET E MPLT+VLA KL R+ ++R++ PWLRPD KTQVTV+Y + GA+
Sbjct: 137 GLMFGYATDETEECMPLTIVLAHKLNTRMADLRRSGVLPWLRPDSKTQVTVQYVQDNGAV 196
Query: 184 VPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDEKTIFHLNPSGRFVIGGP 243
+P RVHT++IS QH+E +T E + E LKE VIK V+PA +LDE TI+HL PSGRFVIGGP
Sbjct: 197 IPVRVHTIVISVQHNEDITLEAMREALKEQVIKAVVPAKYLDEDTIYHLQPSGRFVIGGP 256
Query: 244 HGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCL 303
GDAG+TGRKII+DTY KD TKVDRSAAY R AKS+V +GL RR L
Sbjct: 257 QGDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRVL 316
Query: 304 VQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENFDFRPGMIAINLDLKRGGNFRYQ 363
VQVSYAIGV EPLS+ + TYGT K +++++L ++ +NFD RPG+I +LDLK+ YQ
Sbjct: 317 VQVSYAIGVAEPLSISIFTYGTSKKTERELLEVVNKNFDLRPGVIVRDLDLKKP---IYQ 373
Query: 364 KTAACGHFGRDDPDFTWETVKLL 386
KTA GHFGR +F WE K L
Sbjct: 374 KTACYGHFGRS--EFPWEVPKKL 394
>pdb|2OBV|A Chain A, Crystal Structure Of The Human S-adenosylmethionine
Synthetase 1 In Complex With The Product
Length = 384
Score = 459 bits (1180), Expect = e-129, Method: Compositional matrix adjust.
Identities = 224/386 (58%), Positives = 286/386 (74%), Gaps = 7/386 (1%)
Query: 1 MDTFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCAKTNMVMVFGEITTK 60
M F+FTSESV EGHPDK+CDQISDA+LDA L+QDP +KVACET KT MV++ GEIT+
Sbjct: 4 MGVFMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSM 63
Query: 61 AKVDYEKVVRDTCRGIGFVSADVGLDADKCKVLVNIEEQSPEIAQSVHGNLSKRPEEIGA 120
A VDY++VVRDT + IG+ + G D C VLV +E+QSP+IAQ VH L + E++GA
Sbjct: 64 AMVDYQRVVRDTIKHIGYDDSAKGFDFKTCNVLVALEQQSPDIAQCVH--LDRNEEDVGA 121
Query: 121 GDQGHMFGYATDETPELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEG 180
GDQG MFGYATDET E MPLT++LA KL AR+ ++R++ PWLRPD KTQVTV+Y +
Sbjct: 122 GDQGLMFGYATDETEECMPLTIILAHKLNARMADLRRSGLLPWLRPDSKTQVTVQYMQDN 181
Query: 181 GAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDEKTIFHLNPSGRFVI 240
GA++P R+HT++IS QH+E +T E++ LKE VI+ V+PA +LDE T++HL PSGRFVI
Sbjct: 182 GAVIPVRIHTIVISVQHNEDITLEEMRRALKEQVIRAVVPAKYLDEDTVYHLQPSGRFVI 241
Query: 241 GGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLAR 300
GGP GDAG+TGRKII+DTY KD TKVDRSAAY R AKS+V +GL R
Sbjct: 242 GGPQGDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCR 301
Query: 301 RCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENFDFRPGMIAINLDLKRGGNF 360
R LVQVSYAIGV EPLS+ + TYGT + +++++L ++ +NFD RPG+I +LDLK+
Sbjct: 302 RVLVQVSYAIGVAEPLSISIFTYGTSQKTERELLDVVHKNFDLRPGVIVRDLDLKKP--- 358
Query: 361 RYQKTAACGHFGRDDPDFTWETVKLL 386
YQKTA GHFGR +F WE + L
Sbjct: 359 IYQKTACYGHFGRS--EFPWEVPRKL 382
>pdb|3SO4|A Chain A, Methionine-Adenosyltransferase From Entamoeba Histolytica
pdb|3SO4|B Chain B, Methionine-Adenosyltransferase From Entamoeba Histolytica
pdb|3SO4|C Chain C, Methionine-Adenosyltransferase From Entamoeba Histolytica
pdb|3SO4|D Chain D, Methionine-Adenosyltransferase From Entamoeba Histolytica
Length = 415
Score = 428 bits (1101), Expect = e-120, Method: Compositional matrix adjust.
Identities = 221/389 (56%), Positives = 273/389 (70%), Gaps = 8/389 (2%)
Query: 4 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCAKTNMVMVFGEITTKAKV 63
F FTSESV+ GHPDK+CDQISDAILDACL QDP+S VACET KT +++V GEITT A +
Sbjct: 23 FFFTSESVSGGHPDKMCDQISDAILDACLAQDPKSHVACETATKTGLILVLGEITTNAVI 82
Query: 64 DYEKVVRDTCRGIGFVSADVGLDADKCKVLVNIEEQSPEIAQSVHGNLSKRPEEIGAGDQ 123
D K+VR + IG+ + G D C VL +E+QS +IA+ VH + K+ E+IGAGDQ
Sbjct: 83 DIPKIVRGVVKSIGYDDTNKGFDYQTCSVLSCVEQQSQDIAKGVH--VEKKEEDIGAGDQ 140
Query: 124 GHMFGYATDETPELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAM 183
G MFGYATDE+ E+MPLT VL+TKL RL E R+ PWLRPD K+QVT+EY G +
Sbjct: 141 GIMFGYATDESKEMMPLTHVLSTKLILRLQECREKGILPWLRPDSKSQVTLEYEEVEGHL 200
Query: 184 VPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDEKTIFHLNPSGRFVIGGP 243
P RVHT++ISTQH + V+ E+I++ L+E V + VIP +D+K + + NPSGRFVIGGP
Sbjct: 201 KPIRVHTIVISTQHADNVSNEEIAKGLEEEVTQKVIPKELMDDKMLRYYNPSGRFVIGGP 260
Query: 244 HGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCL 303
GDAGLTGRKII+DTY KDS+KVDRS AY R AKS+V +GL R L
Sbjct: 261 MGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDSSKVDRSGAYCARWIAKSLVHAGLCHRVL 320
Query: 304 VQVSYAIGVPEPLSVFVDTYGTGKISDKDILA-LIKENFDFRPGMIAINLDLKRGGNFRY 362
VQ+SYAIGV PLS+ V+TYGTG I D+ IL ++ +NFD RPGMI L L R +
Sbjct: 321 VQLSYAIGVSHPLSINVNTYGTG-ICDESILVDIVNKNFDMRPGMIIKELGLTRP---IF 376
Query: 363 QKTAACGHFGRDDPDFTWETVKLLK-PTE 390
QKTA GHFGR+DPDF WE K L+ P E
Sbjct: 377 QKTAVGGHFGRNDPDFKWEFPKELEIPAE 405
>pdb|1FUG|A Chain A, S-adenosylmethionine Synthetase
pdb|1FUG|B Chain B, S-adenosylmethionine Synthetase
pdb|1P7L|A Chain A, S-Adenosylmethionine Synthetase Complexed With Amppnp And
Met.
pdb|1P7L|B Chain B, S-Adenosylmethionine Synthetase Complexed With Amppnp And
Met.
pdb|1P7L|C Chain C, S-Adenosylmethionine Synthetase Complexed With Amppnp And
Met.
pdb|1P7L|D Chain D, S-Adenosylmethionine Synthetase Complexed With Amppnp And
Met.
pdb|1RG9|A Chain A, S-adenosylmethionine Synthetase Complexed With Sam And
Ppnp
pdb|1RG9|B Chain B, S-adenosylmethionine Synthetase Complexed With Sam And
Ppnp
pdb|1RG9|C Chain C, S-adenosylmethionine Synthetase Complexed With Sam And
Ppnp
pdb|1RG9|D Chain D, S-adenosylmethionine Synthetase Complexed With Sam And
Ppnp
pdb|1MXA|A Chain A, S-Adenosylmethionine Synthetase With Ppi
pdb|1MXB|A Chain A, S-Adenosylmethionine Synthetase With Adp
pdb|1MXC|A Chain A, S-adenosylmethionine Synthetase With 8-br-adp
pdb|1XRA|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase
pdb|1XRC|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase
Length = 383
Score = 389 bits (998), Expect = e-108, Method: Compositional matrix adjust.
Identities = 203/377 (53%), Positives = 259/377 (68%), Gaps = 12/377 (3%)
Query: 5 LFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCAKTNMVMVFGEITTKAKVD 64
LFTSESV+EGHPDK+ DQISDA+LDA LEQDP+++VACET KT MV+V GEITT A VD
Sbjct: 4 LFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVD 63
Query: 65 YEKVVRDTCRGIGFVSADVGLDADKCKVLVNIEEQSPEIAQSVHGNLSKRPEEIGAGDQG 124
E++ R+T R IG+V +D+G DA+ C VL I +QSP+I Q V P E GAGDQG
Sbjct: 64 IEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVD---RADPLEQGAGDQG 120
Query: 125 HMFGYATDETPELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMV 184
MFGYAT+ET LMP + A +L R EVRKN T PWLRPD K+QVT +Y + G +V
Sbjct: 121 LMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQYDD--GKIV 178
Query: 185 PQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDEKTIFHLNPSGRFVIGGPH 244
+ V++STQH E + ++ + E + E +IKP++PA +L T F +NP+GRFVIGGP
Sbjct: 179 --GIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKFFINPTGRFVIGGPM 236
Query: 245 GDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLV 304
GD GLTGRKII+DTY KD +KVDRSAAY R AK++VA+GLA RC +
Sbjct: 237 GDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEI 296
Query: 305 QVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENFDFRPGMIAINLDLKRGGNFRYQK 364
QVSYAIGV EP S+ V+T+GT K+ + + L++E FD RP + LDL + Y++
Sbjct: 297 QVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLL---HPIYKE 353
Query: 365 TAACGHFGRDDPDFTWE 381
TAA GHFGR+ F WE
Sbjct: 354 TAAYGHFGRE--HFPWE 368
>pdb|3IML|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase From
Burkholderia Pseudomallei
pdb|3IML|B Chain B, Crystal Structure Of S-Adenosylmethionine Synthetase From
Burkholderia Pseudomallei
pdb|3IML|C Chain C, Crystal Structure Of S-Adenosylmethionine Synthetase From
Burkholderia Pseudomallei
pdb|3IML|D Chain D, Crystal Structure Of S-Adenosylmethionine Synthetase From
Burkholderia Pseudomallei
Length = 399
Score = 388 bits (996), Expect = e-108, Method: Compositional matrix adjust.
Identities = 204/389 (52%), Positives = 260/389 (66%), Gaps = 9/389 (2%)
Query: 4 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCAKTNMVMVFGEITTKAKV 63
+LFTSESV+EGHPDK+ DQISDAILDA L QD S+VA ET T +V++ GEITT A +
Sbjct: 9 YLFTSESVSEGHPDKVADQISDAILDAILAQDKYSRVAAETLCNTGLVVLAGEITTTANI 68
Query: 64 DYEKVVRDTCRGIGFVSADVGLDADKCKVLVNIEEQSPEIAQSVHGNLSKRPEEIGAGDQ 123
DY ++ RDT + IG+ + D G+D C VLV ++QSP+IAQ V ++ GAGDQ
Sbjct: 69 DYIQIARDTIKRIGYDNTDYGIDYRGCAVLVAYDKQSPDIAQGVDRAHDNNLDQ-GAGDQ 127
Query: 124 GHMFGYATDETPELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAM 183
G MFGYA DETPELMPL + L+ +L R +R++ PWLRPD K+QVTV Y +
Sbjct: 128 GLMFGYACDETPELMPLPIHLSHRLVERQANLRRDGRLPWLRPDAKSQVTVRYVDGK--- 184
Query: 184 VPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDEKTIFHLNPSGRFVIGGP 243
P + TV++STQH + + E + E VIKP +PA + F +NP+GRFVIGGP
Sbjct: 185 -PHSIDTVVLSTQHAPEIDLPALREAVIEEVIKPTLPADLIKGDIKFLVNPTGRFVIGGP 243
Query: 244 HGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCL 303
GD GLTGRKII+DTY KD +KVDRSAAY R AK++VA+GLA R L
Sbjct: 244 QGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRAL 303
Query: 304 VQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENFDFRPGMIAINLDLKRGGNFRYQ 363
+QVSYAIGV EP SV V+T+GTG++SD+ I L++E+FD RP I LDL R Y+
Sbjct: 304 IQVSYAIGVAEPTSVMVNTFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLRP---IYE 360
Query: 364 KTAACGHFGRDDPDFTWETV-KLLKPTEA 391
KTAA GHFGR++P+F+WE K L EA
Sbjct: 361 KTAAYGHFGREEPEFSWEAADKALALAEA 389
>pdb|1XRB|A Chain A, S-adenosylmethionine Synthetase (mat, Atp: L-methionine S-
Adenosyltransferase, E.c.2.5.1.6) In Which Met Residues
Are Replaced With Selenomethionine Residues (mse)
Length = 383
Score = 379 bits (974), Expect = e-105, Method: Compositional matrix adjust.
Identities = 201/377 (53%), Positives = 255/377 (67%), Gaps = 12/377 (3%)
Query: 5 LFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCAKTNMVMVFGEITTKAKVD 64
LFTSESV+EGHPDK+ DQISDA+LDA LEQDP+++VACET KT V+V GEITT A VD
Sbjct: 4 LFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGXVLVGGEITTSAWVD 63
Query: 65 YEKVVRDTCRGIGFVSADVGLDADKCKVLVNIEEQSPEIAQSVHGNLSKRPEEIGAGDQG 124
E++ R+T R IG+V +D G DA+ C VL I +QSP+I Q V P E GAGDQG
Sbjct: 64 IEEITRNTVREIGYVHSDXGFDANSCAVLSAIGKQSPDINQGVD---RADPLEQGAGDQG 120
Query: 125 HMFGYATDETPELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMV 184
FGYAT+ET L P + A +L R EVRKN T PWLRPD K+QVT +Y + G +V
Sbjct: 121 LXFGYATNETDVLXPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQYDD--GKIV 178
Query: 185 PQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDEKTIFHLNPSGRFVIGGPH 244
+ V++STQH E + ++ + E + E +IKP++PA +L T F +NP+GRFVIGGP
Sbjct: 179 --GIDAVVLSTQHSEEIDQKSLQEAVXEEIIKPILPAEWLTSATKFFINPTGRFVIGGPX 236
Query: 245 GDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQAAKSVVASGLARRCLV 304
GD GLTGRKII+DTY KD +KVDRSAAY R AK++VA+GLA RC +
Sbjct: 237 GDCGLTGRKIIVDTYGGXARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEI 296
Query: 305 QVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENFDFRPGMIAINLDLKRGGNFRYQK 364
QVSYAIGV EP S+ V+T+GT K+ + + L++E FD RP + LDL Y++
Sbjct: 297 QVSYAIGVAEPTSIXVETFGTEKVPSEQLTLLVREFFDLRPYGLIQXLDLLHP---IYKE 353
Query: 365 TAACGHFGRDDPDFTWE 381
TAA GHFGR+ F WE
Sbjct: 354 TAAYGHFGRE--HFPWE 368
>pdb|3S82|A Chain A, Structure Of A S-Adenosylmethionine Synthetase From
Mycobacterium Avium
pdb|3S82|B Chain B, Structure Of A S-Adenosylmethionine Synthetase From
Mycobacterium Avium
Length = 407
Score = 349 bits (896), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 197/395 (49%), Positives = 248/395 (62%), Gaps = 22/395 (5%)
Query: 5 LFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCAKTNMVMVFGEITTKAK-- 62
LFTSESV EGHPDK+CD ISD++LDA L QDP S+VA ET T V V GE+TT AK
Sbjct: 11 LFTSESVTEGHPDKICDAISDSVLDALLAQDPRSRVAVETLVTTGQVHVVGEVTTTAKEA 70
Query: 63 -VDYEKVVRDTCRGIGFVSADVGLDADKCKVLVNIEEQSPEIAQSVHGNLSKRPEEI--- 118
D VR+ IG+ S+D G D C V + I QSP+IAQ V R E
Sbjct: 71 FADITNTVRERILDIGYDSSDKGFDGASCGVNIGIGAQSPDIAQGVDTAHETRVEGAADP 130
Query: 119 ----GAGDQGHMFGYATDETPELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTV 174
GAGDQG MFGYA ++TPE MPL + LA +L RLTEVRKN P+LRPDGKTQVT+
Sbjct: 131 LDAQGAGDQGLMFGYAINDTPERMPLPIALAHRLSRRLTEVRKNGVLPYLRPDGKTQVTI 190
Query: 175 EYRNEGGAMVPQRVHTVLISTQHDETVTKEQ-ISEDLKEHVIKPVIP--AH-FLD-EKTI 229
E+ ++ VP R+ TV+ISTQH + E ++ D++E V+ V+ AH LD T
Sbjct: 191 EFEDD----VPVRLDTVVISTQHAADIDLENTLTPDIREKVLNTVLNDLAHDTLDTSSTR 246
Query: 230 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQA 289
+NP+G+FV+GGP GDAGLTGRKII+DTY KD +KVDRSAAY +R
Sbjct: 247 LLVNPTGKFVVGGPMGDAGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAMRWV 306
Query: 290 AKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENFDFRPGMIA 349
AK++VA+GLA R VQV+YAIG P+ +F++T+GT + I ++ E FD RPG I
Sbjct: 307 AKNIVAAGLAERVEVQVAYAIGKAAPVGLFIETFGTATVDPVKIEKIVPEVFDLRPGAII 366
Query: 350 INLDLKRGGNFRYQKTAACGHFGRDDPDFTWETVK 384
+LDL R Y +TAA GHFGR D + WE +
Sbjct: 367 RDLDLLRP---IYAQTAAYGHFGRTDVELPWEQLN 398
>pdb|3RV2|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase From
Mycobacterium Marinum
pdb|3RV2|B Chain B, Crystal Structure Of S-Adenosylmethionine Synthetase From
Mycobacterium Marinum
Length = 407
Score = 347 bits (889), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 199/392 (50%), Positives = 245/392 (62%), Gaps = 22/392 (5%)
Query: 5 LFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCAKTNMVMVFGEITTKAK-- 62
LFTSESV EGHPDK+CD +SD++LDA L DP S+VA ET T V V GE+TT AK
Sbjct: 11 LFTSESVTEGHPDKICDAVSDSVLDALLAADPRSRVAVETLVTTGQVHVVGEVTTTAKEA 70
Query: 63 -VDYEKVVRDTCRGIGFVSADVGLDADKCKVLVNIEEQSPEIAQSVHGNLSKRPEEI--- 118
D +VR+ IG+ S+D G D C V + I QSP+IAQ V R E
Sbjct: 71 FADITNIVRERILDIGYDSSDKGFDGASCGVNIGIGAQSPDIAQGVDTAHEARVEGAADP 130
Query: 119 ----GAGDQGHMFGYATDETPELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTV 174
GAGDQG MFGYA ++TPELMPL + LA +L RLTEVRKN P+LRPDGKTQVT+
Sbjct: 131 LDAQGAGDQGLMFGYAINDTPELMPLPIALAHRLSRRLTEVRKNGVLPYLRPDGKTQVTI 190
Query: 175 EYRNEGGAMVPQRVHTVLISTQH-DETVTKEQISEDLKEHVIKPVIP--AH-FLDEKTIF 230
Y + VP R+ TV+ISTQH D+ + + D++E V+K V+ AH LD +
Sbjct: 191 AYEDR----VPVRLDTVVISTQHADDIDLVKTLDPDIREQVLKTVLDDLAHDTLDASAVR 246
Query: 231 HL-NPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQA 289
L NP+G+FV+GGP GDAGLTGRKII+DTY KD +KVDRSAAY +R
Sbjct: 247 VLVNPTGKFVLGGPMGDAGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAMRWV 306
Query: 290 AKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENFDFRPGMIA 349
AK+VVA+GLA R VQV+YAIG P+ +FV+T+G+ + I I E FD RPG I
Sbjct: 307 AKNVVAAGLAERVEVQVAYAIGKAAPVGLFVETFGSEAVDPVKIEKAIGEVFDLRPGAII 366
Query: 350 INLDLKRGGNFRYQKTAACGHFGRDDPDFTWE 381
+L+L R Y TAA GHFGR D D WE
Sbjct: 367 RDLNLLRP---IYAPTAAYGHFGRTDVDLPWE 395
>pdb|3TDE|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase
Rv1392 From Mycobacterium Tuberculosis
pdb|3TDE|B Chain B, Crystal Structure Of S-Adenosylmethionine Synthetase
Rv1392 From Mycobacterium Tuberculosis
pdb|3TDE|C Chain C, Crystal Structure Of S-Adenosylmethionine Synthetase
Rv1392 From Mycobacterium Tuberculosis
pdb|3TDE|D Chain D, Crystal Structure Of S-Adenosylmethionine Synthetase
Rv1392 From Mycobacterium Tuberculosis
Length = 408
Score = 341 bits (875), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 200/392 (51%), Positives = 241/392 (61%), Gaps = 22/392 (5%)
Query: 5 LFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCAKTNMVMVFGEITTKAK-- 62
LFTSESV EGHPDK+CD ISD++LDA L DP S+VA ET T V V GE+TT AK
Sbjct: 12 LFTSESVTEGHPDKICDAISDSVLDALLAADPRSRVAVETLVTTGQVHVVGEVTTSAKEA 71
Query: 63 -VDYEKVVRDTCRGIGFVSADVGLDADKCKVLVNIEEQSPEIAQSVHGNLSKRPE----- 116
D VR IG+ S+D G D C V + I QSP+IAQ V R E
Sbjct: 72 FADITNTVRARILEIGYDSSDKGFDGATCGVNIGIGAQSPDIAQGVDTAHEARVEGAADP 131
Query: 117 --EIGAGDQGHMFGYATDETPELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTV 174
GAGDQG MFGYA + TPELMPL + LA +L RLTEVRKN P+LRPDGKTQVT+
Sbjct: 132 LDSQGAGDQGLMFGYAINATPELMPLPIALAHRLSRRLTEVRKNGVLPYLRPDGKTQVTI 191
Query: 175 EYRNEGGAMVPQRVHTVLISTQHDETVTKEQ-ISEDLKEHVIKPVIP--AH-FLDEKTIF 230
Y + VP R+ TV+ISTQH + E+ + D++E V+ V+ AH LD T+
Sbjct: 192 AYEDN----VPVRLDTVVISTQHAADIDLEKTLDPDIREKVLNTVLDDLAHETLDASTVR 247
Query: 231 HL-NPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDSTKVDRSAAYIVRQA 289
L NP+G+FV+GGP GDAGLTGRKII+DTY KD +KVDRSAAY +R
Sbjct: 248 VLVNPTGKFVLGGPMGDAGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAMRWV 307
Query: 290 AKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENFDFRPGMIA 349
AK+VVA+GLA R VQV+YAIG P+ +FV+T+GT I I E FD RPG I
Sbjct: 308 AKNVVAAGLAERVEVQVAYAIGKAAPVGLFVETFGTETEDPVKIEKAIGEVFDLRPGAII 367
Query: 350 INLDLKRGGNFRYQKTAACGHFGRDDPDFTWE 381
+L+L R Y TAA GHFGR D + WE
Sbjct: 368 RDLNLLRP---IYAPTAAYGHFGRTDVELPWE 396
>pdb|1RPA|A Chain A, Three-Dimensional Structure Of Rat Acid Phosphatase In
Complex With L(+) Tartrate
pdb|1RPT|A Chain A, Crystal Structures Of Rat Acid Phosphatase Complexed With
The Transitions State Analogs Vanadate And Molybdate:
Implications For The Reaction Mechanism
Length = 342
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 29/61 (47%)
Query: 165 RPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFL 224
R G V +N A PQ+ +++ + HD TV+ Q++ D+ ++ P H +
Sbjct: 225 RLQGGVLVNEILKNMKLATQPQKARKLIMYSAHDTTVSGLQMALDVYNGLLPPYASCHIM 284
Query: 225 D 225
+
Sbjct: 285 E 285
>pdb|4EX8|A Chain A, Crystal Structure Of The Prealnumycin C-glycosynthase
Alna
pdb|4EX9|A Chain A, Crystal Structure Of The Prealnumycin C-glycosynthase
Alna In Complex With Ribulose 5-phosphate
Length = 316
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 12 NEGHPDKLCDQISDAILDACLEQDPESKVACETCAKTNMVMVFGEITTKAKVDYEKVVRD 71
+E PD+L ++SD I A E+ P VA E+ ITT + ++
Sbjct: 11 SERQPDQLL-EVSDEIATALAERRP--VVALESSL----------ITTDPSSETASLIEK 57
Query: 72 TCRGIGFVSADVGLDADKCKV 92
RG G V A +G+ K V
Sbjct: 58 AVRGAGAVPATIGIAGGKLVV 78
>pdb|4EZI|A Chain A, Crystal Structure Of A Hypothetical Protein (Lpg1103) From
Legionella Pneumophila Subsp. Pneumophila Str.
Philadelphia 1 At 1.15 A Resolution
Length = 377
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 314 EPLSVFVDTYGTGKISDKD----ILALIKENFDFRPGMIAINLDLKRGGNFRYQKTAACG 369
+PL +F + G IS D IL + ++DF+P + + K + Y
Sbjct: 271 DPLLIFQPKFSNGIISKTDRNTEILKINFNHYDFKPTAPLLLVGTKGDRDVPYAGAEXAY 330
Query: 370 HFGRDDPDFTW 380
H R DF W
Sbjct: 331 HSFRKYSDFVW 341
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,708,891
Number of Sequences: 62578
Number of extensions: 480324
Number of successful extensions: 1111
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1068
Number of HSP's gapped (non-prelim): 15
length of query: 391
length of database: 14,973,337
effective HSP length: 101
effective length of query: 290
effective length of database: 8,652,959
effective search space: 2509358110
effective search space used: 2509358110
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)