Query 045474
Match_columns 391
No_of_seqs 162 out of 1154
Neff 4.2
Searched_HMMs 29240
Date Tue Mar 26 00:10:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045474.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045474hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3so4_A Methionine-adenosyltran 100.0 4E-193 1E-197 1423.7 34.8 383 2-389 21-403 (415)
2 3iml_A S-adenosylmethionine sy 100.0 6E-191 2E-195 1404.8 35.7 378 2-387 7-384 (399)
3 3s82_A S-adenosylmethionine sy 100.0 9E-191 3E-195 1407.7 30.2 379 2-387 8-401 (407)
4 2p02_A S-adenosylmethionine sy 100.0 1E-189 3E-194 1396.6 34.3 379 3-388 18-396 (396)
5 1p7l_A S-adenosylmethionine sy 100.0 9E-189 3E-193 1385.1 32.8 373 3-387 2-374 (383)
6 4hpv_A S-adenosylmethionine sy 98.5 9.7E-07 3.3E-11 89.1 14.4 302 12-341 29-389 (407)
7 1mp9_A Tata-binding protein; t 54.3 60 0.002 29.6 9.0 80 186-298 13-96 (198)
8 1ais_A TBP, protein (tata-bind 45.3 57 0.002 29.3 7.3 81 185-298 8-92 (182)
9 2z8u_A Tata-box-binding protei 42.3 50 0.0017 29.9 6.5 80 186-298 13-96 (188)
10 2gjh_A Designed protein; oblig 39.6 24 0.00081 26.4 3.2 38 64-101 18-55 (62)
11 3kxy_T EXSE; type-three secret 32.3 27 0.00093 26.4 2.5 21 269-293 17-37 (66)
12 2w42_A PIWI, putative uncharac 31.2 33 0.0011 34.4 3.7 29 135-163 384-412 (427)
13 1ytb_A Protein (tata binding p 26.2 2.2E+02 0.0075 25.4 7.9 81 185-298 4-88 (180)
14 1qys_A TOP7; alpha-beta, novel 26.1 26 0.00089 28.5 1.6 38 64-101 62-99 (106)
15 3pvv_A Chromosomal replication 25.1 51 0.0017 26.9 3.2 27 324-350 1-27 (101)
No 1
>3so4_A Methionine-adenosyltransferase; structural genomics, medical structural genomics of pathogen protozoa, MSGPP; 3.18A {Entamoeba histolytica}
Probab=100.00 E-value=4.1e-193 Score=1423.70 Aligned_cols=383 Identities=60% Similarity=0.983 Sum_probs=366.3
Q ss_pred CccceecccCCCCCCchhhhhHHHHHHHHHhhcCCCCcEEEEEeeeeCeEEEEEEEeecccccHHHHHHHHHHhcCCCCC
Q 045474 2 DTFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCAKTNMVMVFGEITTKAKVDYEKVVRDTCRGIGFVSA 81 (391)
Q Consensus 2 ~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivr~~i~~IGY~~~ 81 (391)
.+||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||+++|||++|++|||+++
T Consensus 21 ~~~lFTSESVseGHPDKicDqISDAILDa~L~qDp~arVAcEt~vttg~V~v~GEItt~a~vD~~~ivR~~ik~IGY~~~ 100 (415)
T 3so4_A 21 SRFFFTSESVSGGHPDKMCDQISDAILDACLAQDPKSHVACETATKTGLILVLGEITTNAVIDIPKIVRGVVKSIGYDDT 100 (415)
T ss_dssp -CEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEECSSEEEEEEEEECSCCCCHHHHHHHHHHHHTCEEG
T ss_pred cceeEeeccccCCCChHHHhhHhHHHHHHHHhcCCCCcEEEEEEeecCeEEEEEEEecccccCHHHHHHHHHhccCCCCc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEeeccCChhhhhccCCCCCCCCCCCCCCcceeeeeEecCCCCCCCCchHHHHHHHHHHHHHHHHcCCC
Q 045474 82 DVGLDADKCKVLVNIEEQSPEIAQSVHGNLSKRPEEIGAGDQGHMFGYATDETPELMPLTLVLATKLGARLTEVRKNKTC 161 (391)
Q Consensus 82 ~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~g~~ 161 (391)
++|||++||+|+++|++|||||||||+.+ +..+++||||||||||||||||||||||||+|||+|++||+++||+|++
T Consensus 101 ~~gFd~~tc~Vl~~i~~QSpDIaqGVd~~--~~~~~~GAGDQGiMFGYAtdET~elMPlpi~lAH~L~~rla~~Rk~g~l 178 (415)
T 3so4_A 101 NKGFDYQTCSVLSCVEQQSQDIAKGVHVE--KKEEDIGAGDQGIMFGYATDESKEMMPLTHVLSTKLILRLQECREKGIL 178 (415)
T ss_dssp GGTEETTTCEEEEEEEEECCC-------------CCCCCSSCEEEEEEEETTSTTSSCHHHHHHHHHHHHHHHHHHHSSS
T ss_pred ccCccCCceEEEEecccCChhhhhccccc--cchhhcCCCcceeEEEEecCCCcccCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999953 2345799999999999999999999999999999999999999999999
Q ss_pred CcccCCceeeEEEEEecCCCcceeeEEeEEEEeeecCCCCCHHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEEc
Q 045474 162 PWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDEKTIFHLNPSGRFVIG 241 (391)
Q Consensus 162 ~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviG 241 (391)
||||||+||||||+|++++|.++|+||+||||||||++++++++|+++|+|+||+||+|++|++++|+||||||||||||
T Consensus 179 ~~LrPD~KtQVTveY~~~~g~~~P~rv~tvViStQH~~~v~~~~l~~~i~e~VI~~vip~~~ld~~t~~~INPtGrFViG 258 (415)
T 3so4_A 179 PWLRPDSKSQVTLEYEEVEGHLKPIRVHTIVISTQHADNVSNEEIAKGLEEEVTQKVIPKELMDDKMLRYYNPSGRFVIG 258 (415)
T ss_dssp TTEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEECTTSCHHHHHHHHHHHTHHHHSCTTTCCSSCEEEESTTCCCCSC
T ss_pred CeeccCcceEEEEEEEcCCCCceeeEEEEEEEEEecCCCCCHHHHHHHHHHHHHHHhcCcccCCCCeEEEECCCCCeEEC
Confidence 99999999999999987667789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCceEEEecCCCccccccccCcCCCCCccchhhhhHHHHHHHHHHHhccccceEEEEEEEecccceeEEEEe
Q 045474 242 GPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVD 321 (391)
Q Consensus 242 GP~~DtGLTGRKiiVDTYGG~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~c~vQlsYAIGv~~Pvsi~V~ 321 (391)
||+||+|||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+||
T Consensus 259 GP~gDaGLTGRKIIVDTYGG~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVAAGLA~rc~VQlsYAIGva~PvSi~V~ 338 (415)
T 3so4_A 259 GPMGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDSSKVDRSGAYCARWIAKSLVHAGLCHRVLVQLSYAIGVSHPLSINVN 338 (415)
T ss_dssp TTTTSCEETTSCTTTTTTTTSSCCCSCCCTTBCTTSHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECTTCSSCSEEEEE
T ss_pred CCcccccccCceEEEEccCCcccCCCccccCCCccccccchhHHHHHHHHHHHHcCCcCeEEEEEEEeeccccceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcCCHHHHHHHHHHhCCCChHHHHHHhccccccccccccccccccCCCCCCCCCccccccCCCC
Q 045474 322 TYGTGKISDKDILALIKENFDFRPGMIAINLDLKRGGNFRYQKTAACGHFGRDDPDFTWETVKLLKPT 389 (391)
Q Consensus 322 tfgT~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~P~~~iY~~ta~yGHFGr~~~~fpWE~~d~~~~~ 389 (391)
||||+++++++|.++|+++|||||++||++|+|+|| ||++||+||||||++++||||++|+|.++
T Consensus 339 TfGT~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~P---iY~~tAaYGHFGR~~~~f~WE~~d~l~~~ 403 (415)
T 3so4_A 339 TYGTGICDESILVDIVNKNFDMRPGMIIKELGLTRP---IFQKTAVGGHFGRNDPDFKWEFPKELEIP 403 (415)
T ss_dssp ECSCCSSCHHHHHHHHHHHCCCCHHHHHHHHTTTSS---CCTGGGSSCSSSCCCTTCTTSSCCCCCCC
T ss_pred eCCCCcCCHHHHHHHHHHhcCCCHHHHHHHcCCCCC---cchhhcccccCCCCCCCCCCcCCcccCCC
Confidence 999999999999999999999999999999999999 99999999999999989999999999875
No 2
>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP-BI cobalt, magnesium, metal-binding, nucleotide-binding, one-C metabolism; 2.35A {Burkholderia pseudomallei}
Probab=100.00 E-value=5.8e-191 Score=1404.77 Aligned_cols=378 Identities=56% Similarity=0.913 Sum_probs=351.1
Q ss_pred CccceecccCCCCCCchhhhhHHHHHHHHHhhcCCCCcEEEEEeeeeCeEEEEEEEeecccccHHHHHHHHHHhcCCCCC
Q 045474 2 DTFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCAKTNMVMVFGEITTKAKVDYEKVVRDTCRGIGFVSA 81 (391)
Q Consensus 2 ~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivr~~i~~IGY~~~ 81 (391)
.+||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||+++|||++|++|||+++
T Consensus 7 ~~~lFTSESVseGHPDKicDqISDaILDa~L~~Dp~arVAcEt~~~tg~V~v~GEItt~a~vd~~~ivR~~i~~IGY~~~ 86 (399)
T 3iml_A 7 NDYLFTSESVSEGHPDKVADQISDAILDAILAQDKYSRVAAETLCNTGLVVLAGEITTTANIDYIQIARDTIKRIGYDNT 86 (399)
T ss_dssp CEEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEECSSEEEEEEEEECSCCCCHHHHHHHHHHHHTCC--
T ss_pred cCceEeccccCCCCCcHHHHHHhHHHHHHHHhcCCCCcEEEEEEeccCeEEEEEEEecccccCHHHHHHHHHhccCCCCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEeeccCChhhhhccCCCCCCCCCCCCCCcceeeeeEecCCCCCCCCchHHHHHHHHHHHHHHHHcCCC
Q 045474 82 DVGLDADKCKVLVNIEEQSPEIAQSVHGNLSKRPEEIGAGDQGHMFGYATDETPELMPLTLVLATKLGARLTEVRKNKTC 161 (391)
Q Consensus 82 ~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~g~~ 161 (391)
++|||++||+|+++|++|||||+|||+.+. ...+++||||||||||||||||||||||||+|||+|++||+++||+|++
T Consensus 87 ~~gFd~~tc~Vl~~i~~QSpDIaqGVd~~~-~~~~~~GAGDQGiMFGYA~~ET~elMPlpi~lAH~L~~rl~~~Rk~g~l 165 (399)
T 3iml_A 87 DYGIDYRGCAVLVAYDKQSPDIAQGVDRAH-DNNLDQGAGDQGLMFGYACDETPELMPLPIHLSHRLVERQANLRRDGRL 165 (399)
T ss_dssp -------CCEEEEEEEEECC-------------CTTCCBSSCEEEEEEEETTSTTSCCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred ccCccCCceEEEEecccCChhHhhhhcccc-cchhhcCcCcceeEEEEecCCccccCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999521 1235799999999999999999999999999999999999999999999
Q ss_pred CcccCCceeeEEEEEecCCCcceeeEEeEEEEeeecCCCCCHHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEEc
Q 045474 162 PWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDEKTIFHLNPSGRFVIG 241 (391)
Q Consensus 162 ~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviG 241 (391)
||||||+||||||+|++ | +|+||+||||||||++++++++|+++|+|+||+||+|++|++++|+||||||||||||
T Consensus 166 ~~LrPD~KtQVTveY~~--~--~P~rv~tvViStQH~~~v~~~~l~~~i~e~vi~~vip~~~l~~~t~~~INPtGrFViG 241 (399)
T 3iml_A 166 PWLRPDAKSQVTVRYVD--G--KPHSIDTVVLSTQHAPEIDLPALREAVIEEVIKPTLPADLIKGDIKFLVNPTGRFVIG 241 (399)
T ss_dssp TTEEEEEEEEEEEEEET--T--EEEEEEEEEEEEEECTTSCHHHHHHHHHHHTTTTTSCGGGCCTTCEEEESTTCCCCSC
T ss_pred CeecCCCceEEEEEEEC--C--ceeeEEEEEEEeecCCCCCHHHHHHHHHHHHHHHhcCcccCCCCcEEEECCCCCeEeC
Confidence 99999999999999974 5 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCceEEEecCCCccccccccCcCCCCCccchhhhhHHHHHHHHHHHhccccceEEEEEEEecccceeEEEEe
Q 045474 242 GPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVD 321 (391)
Q Consensus 242 GP~~DtGLTGRKiiVDTYGG~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~c~vQlsYAIGv~~Pvsi~V~ 321 (391)
||+||+|||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+||
T Consensus 242 GP~gDaGLTGRKIIVDTYGG~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVAAGLA~rc~VQlsYAIGva~P~Si~V~ 321 (399)
T 3iml_A 242 GPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRALIQVSYAIGVAEPTSVMVN 321 (399)
T ss_dssp GGGTSCEETTSCTTTTTTTTSSCCCSCCCTTBCTTSHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECBTCSSCSEEEEE
T ss_pred CCcccccccccceeeecCCcccCCCCccccCCCccccchHHHHHHHHHHHHHHhhcccceeEEEEEEecCcccceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcCCHHHHHHHHHHhCCCChHHHHHHhccccccccccccccccccCCCCCCCCCccccccCC
Q 045474 322 TYGTGKISDKDILALIKENFDFRPGMIAINLDLKRGGNFRYQKTAACGHFGRDDPDFTWETVKLLK 387 (391)
Q Consensus 322 tfgT~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~P~~~iY~~ta~yGHFGr~~~~fpWE~~d~~~ 387 (391)
||||+++++++|.++|+++|||||++||++|+|+|| ||++||+||||||++++||||++|+++
T Consensus 322 tfGT~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~P---iY~~tAaYGHFGR~~~~f~WE~~d~v~ 384 (399)
T 3iml_A 322 TFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLRP---IYEKTAAYGHFGREEPEFSWEAADKAL 384 (399)
T ss_dssp CTTCCSSCHHHHHHHHHHHCCCSHHHHHHHHTCCSS---CCGGGGSSCSSSCCCTTCGGGCCTTHH
T ss_pred eCCCcccCHHHHHHHHHHHcCCCHHHHHHHcCCCCC---chhhhcCcCCCCCCCCCCCccCccHHH
Confidence 999999999999999999999999999999999999 999999999999999899999999853
No 3
>3s82_A S-adenosylmethionine synthase; seattle structural genomics center for infectious disease, S adenosylmethionine synthetase, transferase; 1.73A {Mycobacterium avium} PDB: 3tde_A 3rv2_A
Probab=100.00 E-value=8.9e-191 Score=1407.74 Aligned_cols=379 Identities=53% Similarity=0.870 Sum_probs=354.0
Q ss_pred CccceecccCCCCCCchhhhhHHHHHHHHHhhcCCCCcEEEEEeeeeCeEEEEEEEeec---ccccHHHHHHHHHHhcCC
Q 045474 2 DTFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCAKTNMVMVFGEITTK---AKVDYEKVVRDTCRGIGF 78 (391)
Q Consensus 2 ~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~---a~vd~~~ivr~~i~~IGY 78 (391)
++||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+ ++||+++|||++|++|||
T Consensus 8 ~~~lFTSESVseGHPDKicDqISDAILDa~L~~Dp~arVAcEt~vttg~V~v~GEItt~~~~a~vd~~~ivR~~i~~IGY 87 (407)
T 3s82_A 8 KGRLFTSESVTEGHPDKICDAISDSVLDALLAQDPRSRVAVETLVTTGQVHVVGEVTTTAKEAFADITNTVRERILDIGY 87 (407)
T ss_dssp -CEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEETTEEEEEEEEECSCHHHHHTHHHHHHHHHHHHTC
T ss_pred CceEEeeccccCCCCcHHHhhhhHHHHHHHHhcCCCCcEEEEEEeccCeEEEEEEEeeCCcccccCHHHHHHHHHHhcCC
Confidence 35899999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCCCCCCCCCceEEEEeeccCChhhhhccCCCCC-------CCCCCCCCCcceeeeeEecCCCCCCCCchHHHHHHHHHH
Q 045474 79 VSADVGLDADKCKVLVNIEEQSPEIAQSVHGNLS-------KRPEEIGAGDQGHMFGYATDETPELMPLTLVLATKLGAR 151 (391)
Q Consensus 79 ~~~~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~-------~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~ 151 (391)
+++++|||++||+|+++|++|||||||||+...+ +..+++||||||||||||||||||||||||+|||+|++|
T Consensus 88 ~~~~~gFd~~tc~Vl~~i~~QSpDIaqGVd~~~e~r~~~~~~~~~~~GAGDQGiMFGYA~~ET~elMPlpi~lAH~L~~r 167 (407)
T 3s82_A 88 DSSDKGFDGASCGVNIGIGAQSPDIAQGVDTAHETRVEGAADPLDAQGAGDQGLMFGYAINDTPERMPLPIALAHRLSRR 167 (407)
T ss_dssp EEGGGTEETTTSEEEEEEEEECC--------------------------CCCEEEEEEEETTSTTSSCHHHHHHHHHHHH
T ss_pred CCcccCcCCCceEEEEecccCChHHHhhhcchhhcccccccchhhhcCCccceeEEEEecCCCcccCchHHHHHHHHHHH
Confidence 9999999999999999999999999999996421 112579999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCcccCCceeeEEEEEecCCCcceeeEEeEEEEeeecCCCCCHHH-HHHHHHHhhcccccCC----CCCCC
Q 045474 152 LTEVRKNKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQ-ISEDLKEHVIKPVIPA----HFLDE 226 (391)
Q Consensus 152 l~~~Rk~g~~~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~~~~-l~~~i~e~Vi~~v~~~----~~~~~ 226 (391)
|+++||+|++||||||+||||||+|++ | +|+||+||||||||++++++++ |+++|+|+||+||+|+ +|+++
T Consensus 168 la~~Rk~g~l~~LrPD~KtQVTveY~~--~--~P~rv~tvViStQH~~~v~~~~~l~~~i~e~VI~~vip~~~~~~~~~~ 243 (407)
T 3s82_A 168 LTEVRKNGVLPYLRPDGKTQVTIEFED--D--VPVRLDTVVISTQHAADIDLENTLTPDIREKVLNTVLNDLAHDTLDTS 243 (407)
T ss_dssp HHHHHHTSSSTTEEEEEEEEEEEEEET--T--EEEEEEEEEEEEEECTTCCTTTTHHHHHHHHTHHHHHHHHCCSSCBCT
T ss_pred HHHHHHcCCCCeecCCCceEEEEEEEC--C--ceeeEEEEEEEeecCCCCCHHHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 999999999999999999999999974 6 8999999999999999999999 9999999999999998 89999
Q ss_pred CcEEEECCCCCeEEcCCCCCcccCCceEEEecCCCccccccccCcCCCCCccchhhhhHHHHHHHHHHHhccccceEEEE
Q 045474 227 KTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQV 306 (391)
Q Consensus 227 ~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGG~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~c~vQl 306 (391)
+|+||||||||||||||+||+|||||||||||||||++|||||||||||||||||||||||||||||||||||+||||||
T Consensus 244 ~t~~~INPtGrFViGGP~gDaGLTGRKIIVDTYGG~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVAAGLA~rc~VQl 323 (407)
T 3s82_A 244 STRLLVNPTGKFVVGGPMGDAGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAMRWVAKNIVAAGLAERVEVQV 323 (407)
T ss_dssp TCEEEESTTCCCCSCTTTTSEEETTSCTTTTTTTTSSCCCSCCCTTBCTTCHHHHHHHHHHHHHHHHHHTTSCSEEEEEE
T ss_pred CeEEEECCCCCeEECCCcccccccCceEEEecCCCcccCCCccccCCCccccchhHHHHHHHHHHHHHHcccccceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccceeEEEEeecCCCcCCHHHHHHHHHHhCCCChHHHHHHhccccccccccccccccccCCCCCCCCCccccccC
Q 045474 307 SYAIGVPEPLSVFVDTYGTGKISDKDILALIKENFDFRPGMIAINLDLKRGGNFRYQKTAACGHFGRDDPDFTWETVKLL 386 (391)
Q Consensus 307 sYAIGv~~Pvsi~V~tfgT~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~P~~~iY~~ta~yGHFGr~~~~fpWE~~d~~ 386 (391)
|||||+++|+||+||||||+++++++|.++|+++|||||++||++|+|+|| ||++||+||||||++++||||+||++
T Consensus 324 sYAIGva~PvSi~V~tfGT~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~P---iY~~tAaYGHFGR~~~~f~WE~~dkv 400 (407)
T 3s82_A 324 AYAIGKAAPVGLFIETFGTATVDPVKIEKIVPEVFDLRPGAIIRDLDLLRP---IYAQTAAYGHFGRTDVELPWEQLNKV 400 (407)
T ss_dssp EECTTCSSCSEEEEECTTCCSSCHHHHHHHHHHHSCCSHHHHHHHTTCSSS---CCGGGSSSCSSSCSSSCCGGGCCTTH
T ss_pred EEecccccceEEEEEeCCCCCCCHHHHHHHHHHhcCCCHHHHHHHcCCCCC---cchhhcCcCCCCCCCCCCCccCCcHH
Confidence 999999999999999999999999999999999999999999999999999 99999999999999889999999986
Q ss_pred C
Q 045474 387 K 387 (391)
Q Consensus 387 ~ 387 (391)
+
T Consensus 401 ~ 401 (407)
T 3s82_A 401 D 401 (407)
T ss_dssp H
T ss_pred H
Confidence 3
No 4
>2p02_A S-adenosylmethionine synthetase isoform type-2; structural genomics, structural genomics consortium, SGC, transferase; HET: SAM; 1.21A {Homo sapiens} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1qm4_A 1o92_A* 1o93_A* 1o90_A* 1o9t_A 2obv_A*
Probab=100.00 E-value=9.8e-190 Score=1396.57 Aligned_cols=379 Identities=65% Similarity=1.072 Sum_probs=368.4
Q ss_pred ccceecccCCCCCCchhhhhHHHHHHHHHhhcCCCCcEEEEEeeeeCeEEEEEEEeecccccHHHHHHHHHHhcCCCCCC
Q 045474 3 TFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCAKTNMVMVFGEITTKAKVDYEKVVRDTCRGIGFVSAD 82 (391)
Q Consensus 3 ~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivr~~i~~IGY~~~~ 82 (391)
+||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++|||++|||++|++|||++++
T Consensus 18 ~~lFTSESVseGHPDKicDqISDAILDa~L~~Dp~arVAcEt~v~tg~v~v~GEitt~a~vd~~~ivR~~i~~IGY~~~~ 97 (396)
T 2p02_A 18 TFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAAVDYQKVVREAVKHIGYDDSS 97 (396)
T ss_dssp EEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEETTEEEEEEEEECSCCCCHHHHHHHHHHHHTCEEGG
T ss_pred ceEEeeccccCCCCcHHHHHHHHHHHHHHHhhCCCCcEEEEEEeecCeEEEEEEEcccccCCHHHHHHHHHHHhCCCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEeeccCChhhhhccCCCCCCCCCCCCCCcceeeeeEecCCCCCCCCchHHHHHHHHHHHHHHHHcCCCC
Q 045474 83 VGLDADKCKVLVNIEEQSPEIAQSVHGNLSKRPEEIGAGDQGHMFGYATDETPELMPLTLVLATKLGARLTEVRKNKTCP 162 (391)
Q Consensus 83 ~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~g~~~ 162 (391)
+|||++||+|+++|++|||||||||+.. ++.+++||||||||||||||||||||||||+|||+|++||+++||+|++|
T Consensus 98 ~gfd~~tc~Vl~~i~~QSpDIaqGV~~~--~~~~e~GAGDQGiMFGYAt~ET~elMPlpi~lAh~L~~rla~~Rk~g~l~ 175 (396)
T 2p02_A 98 KGFDYKTCNVLVALEQQSPDIAQGVHLD--RNEEDIGAGDQGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTLP 175 (396)
T ss_dssp GTEETTTSEEEEEEECCCHHHHHHHTTT--CCGGGCCBSSCEEEEEEEETTSTTSSCHHHHHHHHHHHHHHHHHHTTSST
T ss_pred cCCCCCceEEEEecccCChhhhhccccc--ccccccCCCCcceEEEEeCCCCcccCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999953 11236999999999999999999999999999999999999999999999
Q ss_pred cccCCceeeEEEEEecCCCcceeeEEeEEEEeeecCCCCCHHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEEcC
Q 045474 163 WLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDEKTIFHLNPSGRFVIGG 242 (391)
Q Consensus 163 ~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviGG 242 (391)
||||||||||||+|++++|.++|+||+||||||||++++++++||++|+|+||+||+|++|++++|+|||||||||||||
T Consensus 176 ~lrPD~KtQVTveY~~~~~~~~P~rv~tvviS~QH~~~v~~~~lr~~i~e~vi~~v~p~~~ld~~t~~~INPtGrFviGG 255 (396)
T 2p02_A 176 WLRPDSKTQVTVQYMQDRGAVLPIRVHTIVISVQHDEEVCLDEMRDALKEKVIKAVVPAKYLDEDTIYHLQPSGRFVIGG 255 (396)
T ss_dssp TEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEECSSCCHHHHHHHHHHTTHHHHSCGGGCCTTCEEEESTTSCCCSCG
T ss_pred ccCCCcceEEEEEEEcCCCCcCceEEeEEEEeecCCCCCCHHHHHHHHHHHHHHHhcChhhcCCCeEEEECCCCCcccCC
Confidence 99999999999999854466789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCceEEEecCCCccccccccCcCCCCCccchhhhhHHHHHHHHHHHhccccceEEEEEEEecccceeEEEEee
Q 045474 243 PHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDT 322 (391)
Q Consensus 243 P~~DtGLTGRKiiVDTYGG~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~c~vQlsYAIGv~~Pvsi~V~t 322 (391)
|+||+|||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+|||
T Consensus 256 P~gDaGLTGRKIIVDTYGG~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVaAGLA~rc~VQlsYAIGva~PvSi~Vdt 335 (396)
T 2p02_A 256 PQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRVLVQVSYAIGVSHPLSISIFH 335 (396)
T ss_dssp GGTSCEETTSCTTTTTTTTSSCCCSCCCTTBCTTCHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECBTCCSCSEEEEEC
T ss_pred CcccccccCceEEEEcCCCccCCCCcccCCCCccccchhhHHHHHHHHHHHHhhccCCeeEEEEEeecCcccccEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcCCHHHHHHHHHHhCCCChHHHHHHhccccccccccccccccccCCCCCCCCCccccccCCC
Q 045474 323 YGTGKISDKDILALIKENFDFRPGMIAINLDLKRGGNFRYQKTAACGHFGRDDPDFTWETVKLLKP 388 (391)
Q Consensus 323 fgT~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~P~~~iY~~ta~yGHFGr~~~~fpWE~~d~~~~ 388 (391)
|||+++++++|.++|+++|||||++||++|+|+|| ||++||+||||||+ +||||++|++++
T Consensus 336 fGT~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~P---iY~~tAaYGHFGr~--~fpWE~~d~~~~ 396 (396)
T 2p02_A 336 YGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKKP---IYQRTAAYGHFGRD--SFPWEVPKKLKY 396 (396)
T ss_dssp TTCCSSCHHHHHHHHHHHCCCCHHHHHHHHTTTSS---CGGGGSSSCSSSST--TCGGGSCCCCCC
T ss_pred cCCCCCCHHHHHHHHHHHcCCCHHHHHHhcCCCCC---cchhhccccCcCCC--CCCcccccccCC
Confidence 99999999999999999999999999999999999 99999999999997 699999999864
No 5
>1p7l_A S-adenosylmethionine synthetase; AMPPNP, SAM, transferase; HET: SAM ANP PPK; 2.50A {Escherichia coli} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1fug_A 1mxb_A* 1mxc_A* 1mxa_A* 1rg9_A* 1xra_A 1xrb_A 1xrc_A
Probab=100.00 E-value=9.2e-189 Score=1385.10 Aligned_cols=373 Identities=57% Similarity=0.923 Sum_probs=364.7
Q ss_pred ccceecccCCCCCCchhhhhHHHHHHHHHhhcCCCCcEEEEEeeeeCeEEEEEEEeecccccHHHHHHHHHHhcCCCCCC
Q 045474 3 TFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCAKTNMVMVFGEITTKAKVDYEKVVRDTCRGIGFVSAD 82 (391)
Q Consensus 3 ~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivr~~i~~IGY~~~~ 82 (391)
+||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++|||+++||++|++|||++++
T Consensus 2 ~~lFTSESVseGHPDKicDqISDAILDa~L~~Dp~arVAcEt~v~tg~v~v~GEitt~a~vd~~~ivR~~i~~IGY~~~~ 81 (383)
T 1p7l_A 2 KHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSD 81 (383)
T ss_dssp CEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEETTEEEEEEEEECSCCCCHHHHHHHHHHHHTCEEGG
T ss_pred CceeeccccCCCCCcHHHHHHHHHHHHHHHhhCCCCcEEEEEEeecCcEEEEEEEeccccCCHHHHHHHHHHHhCCCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEeeccCChhhhhccCCCCCCCCCCCCCCcceeeeeEecCCCCCCCCchHHHHHHHHHHHHHHHHcCCCC
Q 045474 83 VGLDADKCKVLVNIEEQSPEIAQSVHGNLSKRPEEIGAGDQGHMFGYATDETPELMPLTLVLATKLGARLTEVRKNKTCP 162 (391)
Q Consensus 83 ~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~g~~~ 162 (391)
+|||++||+|+++|++|||||+|||+... .+++||||||||||||||||||||||||+|||+|++||+++||+|++|
T Consensus 82 ~gfd~~tc~v~~~i~~QSpdIa~GV~~~~---~~e~GAGDQGiMFGYA~~ET~e~MPlpi~lAh~L~~rl~~~Rk~g~~~ 158 (383)
T 1p7l_A 82 MGFDANSCAVLSAIGKQSPDINQGVDRAD---PLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLP 158 (383)
T ss_dssp GTEETTTSEEEEEEECCCHHHHHHHSCSS---TTTCCCSSCEEEEEEEETTSTTSCCHHHHHHHHHHHHHHHHHHTTSST
T ss_pred cCcCCCceEEEEecccCChHHhhhcCccc---ccccccCCCceeeEEecCCCcccCchHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999531 236999999999999999999999999999999999999999999999
Q ss_pred cccCCceeeEEEEEecCCCcceeeEEeEEEEeeecCCCCCHHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEEcC
Q 045474 163 WLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDEKTIFHLNPSGRFVIGG 242 (391)
Q Consensus 163 ~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviGG 242 (391)
||||||||||||+|++ | +|+||+||||||||++++++++||++|+|+||+||+|++|++++|+|||||||||||||
T Consensus 159 ~lrPD~KtQVtveY~~--~--~P~rv~tvviS~QH~~~v~~~~l~~~i~e~vi~~v~p~~~ld~~t~~~iNPtGrFviGG 234 (383)
T 1p7l_A 159 WLRPDAKSQVTFQYDD--G--KIVGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKFFINPTGRFVIGG 234 (383)
T ss_dssp TEEEEEEEEEEEEEET--T--EEEEEEEEEEEEEECTTSCHHHHHHHHHHHTTTTTSCGGGCCTTCEEEESTTSCCCSCH
T ss_pred ccCCCccceEEEEEeC--C--ceeEEEEEEEEeecCCCCCHHHHHHHHHHHHHHHhcCccccCCCeEEEECCCCCcccCC
Confidence 9999999999999985 5 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCceEEEecCCCccccccccCcCCCCCccchhhhhHHHHHHHHHHHhccccceEEEEEEEecccceeEEEEee
Q 045474 243 PHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDT 322 (391)
Q Consensus 243 P~~DtGLTGRKiiVDTYGG~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~c~vQlsYAIGv~~Pvsi~V~t 322 (391)
|+||+|||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+|||
T Consensus 235 P~gDaGLTGRKIIVDTYGG~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVaAGLA~rc~VQlsYAIGva~PvSi~Vdt 314 (383)
T 1p7l_A 235 PMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVET 314 (383)
T ss_dssp HHHSCEETTCCTTTTTTTTSSCCCSCCCTTBCTTSHHHHHHHHHHHHHHHHHHTTSBSEEEEEEEECTTCCSCSEEEEEC
T ss_pred ccccccccCceEEEEccCCccCCCCcccCCCCCcccchhhhHHHHHHHHHHhhhccccceeeeeeeecccccccEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcCCHHHHHHHHHHhCCCChHHHHHHhccccccccccccccccccCCCCCCCCCccccccCC
Q 045474 323 YGTGKISDKDILALIKENFDFRPGMIAINLDLKRGGNFRYQKTAACGHFGRDDPDFTWETVKLLK 387 (391)
Q Consensus 323 fgT~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~P~~~iY~~ta~yGHFGr~~~~fpWE~~d~~~ 387 (391)
|||+++++++|.++|+++|||||++||++|+|+|| ||++||+||||||+ +||||++|+++
T Consensus 315 fGT~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~P---iY~~tAaYGHFGr~--~fpWE~~d~~~ 374 (383)
T 1p7l_A 315 FGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLLHP---IYKETAAYGHFGRE--HFPWEKTDKAQ 374 (383)
T ss_dssp TTCBSSCHHHHHHHHHHHCCCSHHHHHHHHTCCSS---CCGGGGSSCSSSCT--TSTTTCCSHHH
T ss_pred cCCCCCcHHHHHHHHHHHcCCCHHHHHHhcCCCCC---chhhhccccCcCCC--CCCccccchHH
Confidence 99999999999999999999999999999999999 99999999999997 69999999764
No 6
>4hpv_A S-adenosylmethionine synthase; structural genomics, PSI-biology; 2.21A {Sulfolobus solfataricus P2}
Probab=98.53 E-value=9.7e-07 Score=89.06 Aligned_cols=302 Identities=20% Similarity=0.244 Sum_probs=175.6
Q ss_pred CCCCCchhhhhHHHHHHHHH----hhc---------CCCCcEEEEEee--------eeCeEEEEEEEeecc---c----c
Q 045474 12 NEGHPDKLCDQISDAILDAC----LEQ---------DPESKVACETCA--------KTNMVMVFGEITTKA---K----V 63 (391)
Q Consensus 12 ~eGHPDKicDqISDaILDa~----L~~---------Dp~arVA~E~~v--------~~~~v~i~GEitt~a---~----v 63 (391)
+-||||-|||-||+++=-++ |++ |+---||-+..- ..=.|+++|..|+.. . +
T Consensus 29 GiGHPDsIcDgiaE~vS~aLs~~Yl~~fG~ILHHN~DK~llvgG~s~p~fGGG~vi~Pi~ii~~GRAT~~~~g~~~~~~i 108 (407)
T 4hpv_A 29 GLGHPDYIADAVAEEASRKLSLYYLKKYGVILHHNLDKTLVVGGQATPRFKGGDIIQPIYIIVAGRATTEVKTESGIDQI 108 (407)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEECCEEEEETTEEEEEECEEEEEEEEECCEEECSSCEEEC
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHhCCeeccccccceEEccEeeccCCCceeeeeEEEEEecceEEEECCccccccc
Confidence 67999999999999875443 332 444444444332 233578888887642 3 7
Q ss_pred cHHHHHHH----HHHhcCCCCCCCCCCCCc-eEEEEeeccCChhhhhccCCCCCCCCCCCCCCcceeeeeEecCCCCCCC
Q 045474 64 DYEKVVRD----TCRGIGFVSADVGLDADK-CKVLVNIEEQSPEIAQSVHGNLSKRPEEIGAGDQGHMFGYATDETPELM 138 (391)
Q Consensus 64 d~~~ivr~----~i~~IGY~~~~~gfd~~~-~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~M 138 (391)
++.+|+.+ .|++. --.+|.++ ..|...+.+-|+|+..-..+. ..-..|-|-....|||
T Consensus 109 Pv~~Ia~~AAk~~l~~~-----l~~lD~e~~v~i~~~i~~GS~dL~~vf~r~----~~vp~ANDTS~gVGyA-------- 171 (407)
T 4hpv_A 109 PVGTIIIESVKEWIRNN-----FRYLDAERHVIVDYKIGKGSSDLVGIFEAS----KRVPLSNDTSFGVGFA-------- 171 (407)
T ss_dssp CHHHHHHHHHHHHHHHH-----CSSCCTTTSEEEEEEEECCEEECC----------CCCCBCSSCCEEEEEE--------
T ss_pred CHHHHHHHHHHHHHHHh-----cccCCCCCcEEEEeeeCCCChhHHHHhcCC----CCCccccccCceeccC--------
Confidence 88887644 44441 11245543 567788999999988665431 1235799999999997
Q ss_pred CchHHHHHHHHHHHHHHHH----cCCCCcccCCceeeEEEEEecCCCcceeeEEeEEEEeeecCCCCC-HHHHHHHHHHh
Q 045474 139 PLTLVLATKLGARLTEVRK----NKTCPWLRPDGKTQVTVEYRNEGGAMVPQRVHTVLISTQHDETVT-KEQISEDLKEH 213 (391)
Q Consensus 139 Pl~i~lAh~L~~~l~~~Rk----~g~~~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~-~~~l~~~i~e~ 213 (391)
||+- .-+|+..++..=. ...+|+.+.|-|.-- ++ +. ..+ -..|-.-.|| .+-.+.+ .-+.++.+++.
T Consensus 172 PlS~--~E~~Vl~~E~~Lns~~~k~~~P~~GeDIKVMG-~R--~g-~~i-~LTvA~a~v~-r~v~~~~~Y~~~K~~v~~~ 243 (407)
T 4hpv_A 172 PLTK--LEKLVYETERHLNSKQFKAKLPEVGEDIKVMG-LR--RG-NEV-DLTIAMATIS-ELIEDVNHYINVKEQVRNQ 243 (407)
T ss_dssp SCCH--HHHHHHHHHHHHHSHHHHHHCTTEEEEEEEEE-EE--ET-TEE-EEEEEEEEEG-GGCCSHHHHHHHHHHHHHH
T ss_pred CCCH--HHHHHHHHHHHhcchhhhhhCcccCCceEEEE-Ee--eC-CeE-EEEEEhhhhh-hhhCCHHHHHHHHHHHHHH
Confidence 5543 3333333333211 135899999999853 33 22 211 1222222233 3333332 22444445444
Q ss_pred hcccccCCCCCCC-CcEEEECCCCC-------eEEcCC---CCCcccCCceEEEecC-CCccccccccCcCCCC-Cccch
Q 045474 214 VIKPVIPAHFLDE-KTIFHLNPSGR-------FVIGGP---HGDAGLTGRKIIIDTY-GGWGAHGGGAFSGKDS-TKVDR 280 (391)
Q Consensus 214 Vi~~v~~~~~~~~-~t~~~INPtG~-------FviGGP---~~DtGLTGRKiiVDTY-GG~~~HGGGAfSGKDp-tKVDR 280 (391)
|-+ .+. ++-+. +.+++||..-. +++=|. +||.|.+||=.=|--- -++-|-+==|-+||.| +-|=.
T Consensus 244 v~~-~a~-~~~~~~~v~v~vNt~D~~~~g~~YLTvtGTSAE~GDdG~VGRGNRvNGLITp~RPMSmEAaAGKNPv~HVGK 321 (407)
T 4hpv_A 244 ILD-LAS-KIAPGYNVRVYVNTGDKIDKNILYLTVTGTSAEHGDDGMTGRGNRGVGLITPMRPMSLEATAGKNPVNHVGK 321 (407)
T ss_dssp HHH-HHH-HHCTTSEEEEEECTTCBGGGTBCCEESSSCGGGGTCCEETTSSCCTTSSBCTTSCCCCCCCTTSCTTTCHHH
T ss_pred HHH-HHH-hcCCCCceEEEEecCCCcCCCceEEEecccccccCCCcccccCcccccccCCCCCccccccCCCCCccchhH
Confidence 333 111 12222 56889998632 233343 6899999994322110 1223445568899998 45666
Q ss_pred hhhhHHHHHHHHHHHh--ccccceEEEEEEEeccc--ceeEEEEeecCCCcCC----HHHHHHHHHHhC
Q 045474 281 SAAYIVRQAAKSVVAS--GLARRCLVQVSYAIGVP--EPLSVFVDTYGTGKIS----DKDILALIKENF 341 (391)
Q Consensus 281 SaAY~AR~iAKniVaa--GlA~~c~vQlsYAIGv~--~Pvsi~V~tfgT~~~~----~~~i~~~v~~~F 341 (391)
-=..+|..||+.|++. | .++|.|.|-=-||.| +|....|...-...++ .+++.+++.+..
T Consensus 322 IYNvlA~~iA~~I~~~v~g-v~ev~V~llSqIG~PId~P~~a~v~v~~~~g~~~~~~~~~v~~I~~~~L 389 (407)
T 4hpv_A 322 LYNVLANLIANKIAQEVKD-VKFSQVQVLGQIGRPIDDPLIANVDVITYDGKLTDETKNEISGIVDEML 389 (407)
T ss_dssp HHHHHHHHHHHHHHHHCTT-EEEEEEEEECCTTSBTTSCSEEEEEEEETTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCC-cceEEEEEecccCCCCCCCeEEEEEEecCCCCChHHHHHHHHHHHHHHH
Confidence 6788999999999984 5 578999999999954 7776666655443343 345666665544
No 7
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=54.26 E-value=60 Score=29.60 Aligned_cols=80 Identities=16% Similarity=0.271 Sum_probs=58.2
Q ss_pred eEEeEEEEeeecCCCCCHHHHHHHHHHhhcccc-cCC---CCCCCCcEEEECCCCCeEEcCCCCCcccCCceEEEecCCC
Q 045474 186 QRVHTVLISTQHDETVTKEQISEDLKEHVIKPV-IPA---HFLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGG 261 (391)
Q Consensus 186 ~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v-~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGG 261 (391)
++|.+||-|+.-.-.+++++|...+..---.|- +|. .+-++++..+|-.||++++=|
T Consensus 13 ~~I~NvVas~~l~~~ldL~~la~~~~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TG------------------- 73 (198)
T 1mp9_A 13 VNIENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVVTG------------------- 73 (198)
T ss_dssp EEEEEEEEEEECCSCCCHHHHHHHSTTCBCCTTTCSSEEEEETTTTEEEEECTTSEEEEEC-------------------
T ss_pred eEEEEEEEEEEcCCcccHHHHHhhCCCCEECCccccceEEEcCCCceEEEEeCCCeEEEec-------------------
Confidence 689999999999999999999876654222222 232 112467899999999999755
Q ss_pred ccccccccCcCCCCCccchhhhhHHHHHHHHHHHhcc
Q 045474 262 WGAHGGGAFSGKDSTKVDRSAAYIVRQAAKSVVASGL 298 (391)
Q Consensus 262 ~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGl 298 (391)
.|--..+..++|.+++.|-..|.
T Consensus 74 --------------akS~e~a~~a~~~i~~~L~~lG~ 96 (198)
T 1mp9_A 74 --------------AKSTDELIKAVKRIIKTLKKYGM 96 (198)
T ss_dssp --------------CSSHHHHHHHHHHHHHHHHHTTC
T ss_pred --------------cCCHHHHHHHHHHHHHHHHHcCC
Confidence 33334677778888888888886
No 8
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=45.31 E-value=57 Score=29.26 Aligned_cols=81 Identities=20% Similarity=0.303 Sum_probs=57.3
Q ss_pred eeEEeEEEEeeecCCCCCHHHHHHHHHHhhcccc-cCC---CCCCCCcEEEECCCCCeEEcCCCCCcccCCceEEEecCC
Q 045474 185 PQRVHTVLISTQHDETVTKEQISEDLKEHVIKPV-IPA---HFLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYG 260 (391)
Q Consensus 185 p~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v-~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYG 260 (391)
.++|.+||-|+.-...++++++...+..---.|- +|. .+-++++..+|-.||++++=|
T Consensus 8 ~~~I~NvVas~~l~~~ldL~~ia~~~~n~eY~P~~fpgli~Rl~~P~~t~lIF~SGKiv~TG------------------ 69 (182)
T 1ais_A 8 KLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTG------------------ 69 (182)
T ss_dssp EEEEEEEEEEEECCSCCCHHHHTTTSTTCBCCTTTCSSEEEECSSSCCEEEECTTSEEEEEE------------------
T ss_pred ceEEEEEEEEEEcCCeeCHHHHHhhCCCcEECCCccccEEEEcCCCcEEEEEeCCCeEEEec------------------
Confidence 4689999999999999999998765443222221 222 112467889999999999755
Q ss_pred CccccccccCcCCCCCccchhhhhHHHHHHHHHHHhcc
Q 045474 261 GWGAHGGGAFSGKDSTKVDRSAAYIVRQAAKSVVASGL 298 (391)
Q Consensus 261 G~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGl 298 (391)
.|--..+.-++|.+++.|-..|+
T Consensus 70 ---------------akS~~~~~~a~~~i~~~L~~lG~ 92 (182)
T 1ais_A 70 ---------------AKSVQDIERAVAKLAQKLKSIGV 92 (182)
T ss_dssp ---------------ESSHHHHHHHHHHHHHHHHHTTC
T ss_pred ---------------CCCHHHHHHHHHHHHHHHHHcCC
Confidence 33334677778888888888886
No 9
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=42.29 E-value=50 Score=29.89 Aligned_cols=80 Identities=19% Similarity=0.326 Sum_probs=56.7
Q ss_pred eEEeEEEEeeecCCCCCHHHHHHHHHHhhcccc-cCC---CCCCCCcEEEECCCCCeEEcCCCCCcccCCceEEEecCCC
Q 045474 186 QRVHTVLISTQHDETVTKEQISEDLKEHVIKPV-IPA---HFLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGG 261 (391)
Q Consensus 186 ~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v-~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGG 261 (391)
++|.+||-|+.=.-.+++++|...+..---.|- +|. .+-++++..+|-.||++++=|
T Consensus 13 ~~i~NvVas~~l~~~ldL~~ia~~~~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TG------------------- 73 (188)
T 2z8u_A 13 IKIVNVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTG------------------- 73 (188)
T ss_dssp CEEEEEEEEEECCSSCCHHHHHHHSSCCC-------CEEEEETTTTEEEEECTTSEEEEEE-------------------
T ss_pred cEEEEEEEEEEeCCeeCHHHHHhhCCCCEECCCCcccEEEEcCCCcEEEEEeCCCeEEEec-------------------
Confidence 689999999998899999999876554222221 222 112467899999999999755
Q ss_pred ccccccccCcCCCCCccchhhhhHHHHHHHHHHHhcc
Q 045474 262 WGAHGGGAFSGKDSTKVDRSAAYIVRQAAKSVVASGL 298 (391)
Q Consensus 262 ~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGl 298 (391)
.|--..+..++|.+|+.|-..|+
T Consensus 74 --------------AkS~e~a~~a~~~~~~~L~~lg~ 96 (188)
T 2z8u_A 74 --------------AKSKEEAEIAIKKIIKELKDAGI 96 (188)
T ss_dssp --------------ESSHHHHHHHHHHHHHHHHHTTC
T ss_pred --------------CCCHHHHHHHHHHHHHHHHhcCC
Confidence 33344677788899998888886
No 10
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=39.55 E-value=24 Score=26.43 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHhcCCCCCCCCCCCCceEEEEeeccCCh
Q 045474 64 DYEKVVRDTCRGIGFVSADVGLDADKCKVLVNIEEQSP 101 (391)
Q Consensus 64 d~~~ivr~~i~~IGY~~~~~gfd~~~~~v~~~i~~QS~ 101 (391)
.+..|.-++..+.||++-...+|.+|.+|.-.++.-|-
T Consensus 18 kfaailikvfaelgyndinvtwdgdtvtvegqleggsl 55 (62)
T 2gjh_A 18 KFAAILIKVFAELGYNDINVTWDGDTVTVEGQLEGGSL 55 (62)
T ss_dssp HHHHHHHHHHHHTTCCSCEEEECSSCEEEEEECCCCCC
T ss_pred HHHHHHHHHHHHhCcccceeEEcCCEEEEEeEEcCCcc
Confidence 45668889999999999988999999998887776553
No 11
>3kxy_T EXSE; type-three secretion system, TTSS, T3SS, chaperone-effector chaperone, effector, chaperone-transcription inhibitor COMP; 2.80A {Pseudomonas aeruginosa}
Probab=32.28 E-value=27 Score=26.39 Aligned_cols=21 Identities=38% Similarity=0.476 Sum_probs=14.9
Q ss_pred cCcCCCCCccchhhhhHHHHHHHHH
Q 045474 269 AFSGKDSTKVDRSAAYIVRQAAKSV 293 (391)
Q Consensus 269 AfSGKDptKVDRSaAY~AR~iAKni 293 (391)
|.-|.|-| |.|=+|||+|+|+
T Consensus 17 avrgedrs----svaglarwlarnv 37 (66)
T 3kxy_T 17 AVRGEDRS----SVAGLARWLARNV 37 (66)
T ss_dssp CCCCCCCS----CHHHHHHHHHHHT
T ss_pred HHhccchh----hHHHHHHHHHHhc
Confidence 34455444 4578999999998
No 12
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=31.20 E-value=33 Score=34.37 Aligned_cols=29 Identities=14% Similarity=0.268 Sum_probs=23.3
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHcCCCCc
Q 045474 135 PELMPLTLVLATKLGARLTEVRKNKTCPW 163 (391)
Q Consensus 135 ~~~MPl~i~lAh~L~~~l~~~Rk~g~~~~ 163 (391)
..=+|.|+.+||+|+.++..+..-+..||
T Consensus 384 ~v~vPap~~YAhklA~l~~~~~~~~~~~~ 412 (427)
T 2w42_A 384 SRNLPVTVNYPKLVAGIIANVNRYGGYPI 412 (427)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCCcCcchHhHHHHHHHHhhhhhcCCCcc
Confidence 34589999999999999999987555333
No 13
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=26.25 E-value=2.2e+02 Score=25.43 Aligned_cols=81 Identities=15% Similarity=0.255 Sum_probs=56.2
Q ss_pred eeEEeEEEEeeecCCCCCHHHHHHHHHHhhcccc-cCC---CCCCCCcEEEECCCCCeEEcCCCCCcccCCceEEEecCC
Q 045474 185 PQRVHTVLISTQHDETVTKEQISEDLKEHVIKPV-IPA---HFLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYG 260 (391)
Q Consensus 185 p~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v-~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYG 260 (391)
..+|.+||-|+.-.-.++++++...+..---.|- +|. .+-++++..+|=.||+.|+=|
T Consensus 4 ~~~I~NiVas~~l~~~ldL~~ia~~~~n~eYePe~fpgli~R~~~Pk~~~lIF~SGKiv~TG------------------ 65 (180)
T 1ytb_A 4 VPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTG------------------ 65 (180)
T ss_dssp CCEEEEEEEEEECCSCCCHHHHHHHSSSEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEE------------------
T ss_pred ceEEEEEEEEEEcCCccCHHHHHhhCCCCEECccccCCEEEEeCCCcEEEEEECCCeEEEEe------------------
Confidence 3688999999999999999998865433211221 222 123567899999999999755
Q ss_pred CccccccccCcCCCCCccchhhhhHHHHHHHHHHHhcc
Q 045474 261 GWGAHGGGAFSGKDSTKVDRSAAYIVRQAAKSVVASGL 298 (391)
Q Consensus 261 G~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGl 298 (391)
.|--..+.-+++.+++-|-..|+
T Consensus 66 ---------------aks~e~~~~a~~~i~~~L~~lg~ 88 (180)
T 1ytb_A 66 ---------------AKSEDDSKLASRKYARIIQKIGF 88 (180)
T ss_dssp ---------------ESSHHHHHHHHHHHHHHHHHHTC
T ss_pred ---------------cCCHHHHHHHHHHHHHHHHHcCC
Confidence 33344566668888888877775
No 14
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=26.10 E-value=26 Score=28.53 Aligned_cols=38 Identities=18% Similarity=0.327 Sum_probs=29.1
Q ss_pred cHHHHHHHHHHhcCCCCCCCCCCCCceEEEEeeccCCh
Q 045474 64 DYEKVVRDTCRGIGFVSADVGLDADKCKVLVNIEEQSP 101 (391)
Q Consensus 64 d~~~ivr~~i~~IGY~~~~~gfd~~~~~v~~~i~~QS~ 101 (391)
.+..|.-++..+.||++-...||.+|..|.-.++.-|-
T Consensus 62 kfaailikvfaelgyndinvtfdgdtvtvegqleggsl 99 (106)
T 1qys_A 62 KFAAILIKVFAELGYNDINVTFDGDTVTVEGQLEGGSL 99 (106)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEETTEEEEEEEC-----
T ss_pred HHHHHHHHHHHHhCCcceeEEEcCCeEEEEeEEcCCcc
Confidence 46678889999999999999999999998877766553
No 15
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=25.10 E-value=51 Score=26.85 Aligned_cols=27 Identities=30% Similarity=0.261 Sum_probs=21.1
Q ss_pred CCCcCCHHHHHHHHHHhCCCChHHHHH
Q 045474 324 GTGKISDKDILALIKENFDFRPGMIAI 350 (391)
Q Consensus 324 gT~~~~~~~i~~~v~~~Fdl~p~~Ii~ 350 (391)
|...++-+.|.+.|.+.|+++|..|..
T Consensus 1 ~~~~it~~~I~~~Va~~f~v~~~dl~s 27 (101)
T 3pvv_A 1 GPHMISAATIMAATAEYFDTTVEELRG 27 (101)
T ss_dssp ----CCHHHHHHHHHHHTTCCHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHhC
Confidence 345688899999999999999999864
Done!