RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 045474
(391 letters)
>d2p02a3 d.130.1.1 (A:274-417) S-adenosylmethionine synthetase
{Human (Homo sapiens), isoform type-2 [TaxId: 9606]}
Length = 144
Score = 208 bits (532), Expect = 8e-68
Identities = 98/148 (66%), Positives = 114/148 (77%), Gaps = 5/148 (3%)
Query: 240 IGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDSTKVDRSAAYIVRQAAKSVVASGLA 299
IGGP GDAGLTGRKII+DTYGGWGAHGGGAFSGKD TKVDRSAAY R AKS+V GL
Sbjct: 1 IGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLC 60
Query: 300 RRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENFDFRPGMIAINLDLKRGGN 359
RR LVQVSYAIGV PLS+ + YGT + S++++L ++K+NFD RPG+I +LDLK+
Sbjct: 61 RRVLVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKKP-- 118
Query: 360 FRYQKTAACGHFGRDDPDFTWETVKLLK 387
YQ+TAA GHFGRD F WE K LK
Sbjct: 119 -IYQRTAAYGHFGRD--SFPWEVPKKLK 143
>d1mxaa3 d.130.1.1 (A:232-383) S-adenosylmethionine synthetase
{Escherichia coli [TaxId: 562]}
Length = 152
Score = 201 bits (513), Expect = 8e-65
Identities = 86/151 (56%), Positives = 106/151 (70%), Gaps = 8/151 (5%)
Query: 240 IGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDSTKVDRSAAYIVRQAAKSVVASGLA 299
IGGP GD GLTGRKII+DTYGG HGGGAFSGKD +KVDRSAAY R AK++VA+GLA
Sbjct: 1 IGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLA 60
Query: 300 RRCLVQVSYAIGVPEPLSVFVDTYGTGKISDKDILALIKENFDFRPGMIAINLDLKRGGN 359
RC +QVSYAIGV EP S+ V+T+GT K+ + + L++E FD RP + LDL
Sbjct: 61 DRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLLHP-- 118
Query: 360 FRYQKTAACGHFGRDDPDFTWE---TVKLLK 387
Y++TAA GHFGR+ F WE +LL+
Sbjct: 119 -IYKETAAYGHFGRE--HFPWEKTDKAQLLR 146
>d2p02a2 d.130.1.1 (A:148-273) S-adenosylmethionine synthetase
{Human (Homo sapiens), isoform type-2 [TaxId: 9606]}
Length = 126
Score = 180 bits (459), Expect = 4e-57
Identities = 82/124 (66%), Positives = 100/124 (80%)
Query: 116 EEIGAGDQGHMFGYATDETPELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVE 175
E+IGAGDQG MFGYATDET E MPLT+VLA KL A+L E+R+N T PWLRPD KTQVTV+
Sbjct: 3 EDIGAGDQGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVQ 62
Query: 176 YRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDEKTIFHLNPS 235
Y + GA++P RVHT++IS QHDE V +++ + LKE VIK V+PA +LDE TI+HL PS
Sbjct: 63 YMQDRGAVLPIRVHTIVISVQHDEEVCLDEMRDALKEKVIKAVVPAKYLDEDTIYHLQPS 122
Query: 236 GRFV 239
GRFV
Sbjct: 123 GRFV 126
>d1mxaa2 d.130.1.1 (A:108-231) S-adenosylmethionine synthetase
{Escherichia coli [TaxId: 562]}
Length = 124
Score = 173 bits (440), Expect = 3e-54
Identities = 61/127 (48%), Positives = 81/127 (63%), Gaps = 4/127 (3%)
Query: 113 KRPEEIGAGDQGHMFGYATDETPELMPLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQV 172
P E GAGDQG MFGYAT+ET LMP + A +L R EVRKN T PWLRPD K+QV
Sbjct: 2 ADPLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQV 61
Query: 173 TVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDEKTIFHL 232
T +Y + + V++STQH E + ++ + E + E +IKP++PA +L T F +
Sbjct: 62 TFQYDDG----KIVGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKFFI 117
Query: 233 NPSGRFV 239
NP+GRFV
Sbjct: 118 NPTGRFV 124
>d2p02a1 d.130.1.1 (A:38-147) S-adenosylmethionine synthetase {Human
(Homo sapiens), isoform type-2 [TaxId: 9606]}
Length = 110
Score = 160 bits (407), Expect = 1e-49
Identities = 68/108 (62%), Positives = 87/108 (80%)
Query: 3 TFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCAKTNMVMVFGEITTKAK 62
TFLFTSESV EGHPDK+CDQISDA+LDA L+QDP++KVACET AKT M+++ GEIT++A
Sbjct: 2 TFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAA 61
Query: 63 VDYEKVVRDTCRGIGFVSADVGLDADKCKVLVNIEEQSPEIAQSVHGN 110
VDY+KVVR+ + IG+ + G D C VLV +E+QSP+IAQ VH +
Sbjct: 62 VDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGVHLD 109
>d1mxaa1 d.130.1.1 (A:1-102) S-adenosylmethionine synthetase
{Escherichia coli [TaxId: 562]}
Length = 102
Score = 150 bits (379), Expect = 1e-45
Identities = 64/100 (64%), Positives = 80/100 (80%)
Query: 4 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCAKTNMVMVFGEITTKAKV 63
LFTSESV+EGHPDK+ DQISDA+LDA LEQDP+++VACET KT MV+V GEITT A V
Sbjct: 3 HLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWV 62
Query: 64 DYEKVVRDTCRGIGFVSADVGLDADKCKVLVNIEEQSPEI 103
D E++ R+T R IG+V +D+G DA+ C VL I +QSP+I
Sbjct: 63 DIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDI 102
>d3vuba_ b.34.6.1 (A:) CcdB {Escherichia coli [TaxId: 562]}
Length = 101
Score = 29.3 bits (66), Expect = 0.25
Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 15/72 (20%)
Query: 171 QVTVEYRNEGGAMVPQRVHTVLISTQHDETVTKEQISEDLKEHVIKPVIPAHFLDEKTIF 230
Q V Y + + + + Q D I + ++ P+ A L +K
Sbjct: 2 QFKV-YTYKRESRYR-----LFVDVQSD-------IIDTPGRRMVIPLASARLLSDKVSR 48
Query: 231 HLNPSGRFVIGG 242
L P IG
Sbjct: 49 ELYP--VVHIGD 58
>d1wmib1 a.137.13.1 (B:7-67) Hypothetical protein PHS014 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 61
Score = 25.1 bits (54), Expect = 4.0
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 186 QRVHTVLISTQHDETVTKEQISEDLK 211
QR+ +L+ + DE +T+E+I+E L+
Sbjct: 15 QRLEAMLMPEERDEDITEEEIAELLE 40
>d2guda1 b.77.3.1 (A:1-121) Griffithsin {Red alga (Griffithsia)
[TaxId: 35158]}
Length = 121
Score = 25.9 bits (57), Expect = 4.9
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 258 TYGGWGAHGGGAFSGKDSTKVDRSAAYI 285
T+ +G GG FSG S V RS +Y+
Sbjct: 3 THRKFGGSGGSPFSGLSSIAV-RSGSYL 29
>d1mw5a_ d.259.1.1 (A:) Hypothetical protein HI1480 {Haemophilus
influenzae [TaxId: 727]}
Length = 162
Score = 25.8 bits (56), Expect = 6.1
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 139 PLTLVLATKLGARLTEVRKNKTCPWLRPDGKTQVTVEYRNE 179
P ++L AR+T + ++K P++R + +EY+ E
Sbjct: 120 PFYVLLPESFAARITLLVQDKALPYVRVSMEYWHALEYKGE 160
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 26.4 bits (57), Expect = 7.8
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 273 KDSTKVDRSAAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTY---GTGKIS 329
D + AA +V + K++ + QV+ A + + VFVD TGK+
Sbjct: 470 PDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGV-VFVDEVPKGLTGKLD 528
Query: 330 DKDILALIKE 339
+ I ++ +
Sbjct: 529 ARKIREILIK 538
>d1us7b_ a.205.1.1 (B:) Hsp90 co-chaperone CDC37 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 201
Score = 25.9 bits (57), Expect = 8.0
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 15 HPDKLCDQISDAILDACLEQDPESKVA-CETCAKTNMVMVF-GEITTKAKVDYEKVVR 70
+ +C++ ++ ++ C++ + E K A E A +VM F E+ KVD R
Sbjct: 31 NVHLVCEETANYLVIWCIDLEVEEKCALMEQVAHQTIVMQFILELAKSLKVDPRACFR 88
>d1sr4c_ b.42.2.1 (C:) Cytolethal distending toxin subunit C
{Haemophilus ducreyi [TaxId: 730]}
Length = 154
Score = 25.2 bits (55), Expect = 8.9
Identities = 12/82 (14%), Positives = 20/82 (24%), Gaps = 9/82 (10%)
Query: 22 QISDAILDACLEQDPESKVACETCAKTNMVMVFGEI-TTKAKVDYEKVVRDTCRGIGFVS 80
Q C + C+ T VF I T + + C
Sbjct: 63 QFKVVGAAKCFAFLGKGTTDCKDTDHT----VFNLIPTNTGAFLIKDALLGFCITSHDFD 118
Query: 81 ADVGLD---ADKCKVLVNIEEQ 99
D+ L+ ++ Q
Sbjct: 119 -DLKLEPCGGSVSGRTFSLAYQ 139
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.405
Gapped
Lambda K H
0.267 0.0680 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,489,389
Number of extensions: 71629
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 15
Length of query: 391
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 304
Effective length of database: 1,213,086
Effective search space: 368778144
Effective search space used: 368778144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.7 bits)