Query 045475
Match_columns 662
No_of_seqs 308 out of 1477
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 02:26:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045475.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045475hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1845 MORC family ATPases [C 100.0 5E-61 1.1E-65 544.8 17.0 412 85-519 97-549 (775)
2 KOG1845 MORC family ATPases [C 99.9 4.9E-28 1.1E-32 276.3 8.9 366 171-621 1-434 (775)
3 PRK05218 heat shock protein 90 99.7 1.1E-16 2.3E-21 183.3 19.4 276 124-502 15-346 (613)
4 PF13589 HATPase_c_3: Histidin 99.6 8.7E-17 1.9E-21 150.8 5.1 93 136-232 4-98 (137)
5 PRK14083 HSP90 family protein; 99.6 7.4E-15 1.6E-19 167.6 17.5 103 124-230 12-129 (601)
6 PTZ00130 heat shock protein 90 99.6 6.3E-14 1.4E-18 162.8 19.8 124 110-236 62-211 (814)
7 COG0326 HtpG Molecular chapero 99.5 1E-12 2.2E-17 148.6 19.1 112 132-247 25-161 (623)
8 PTZ00272 heat shock protein 83 99.4 8.5E-12 1.8E-16 144.5 21.6 104 132-238 23-149 (701)
9 COG0323 MutL DNA mismatch repa 99.4 2.4E-12 5.2E-17 148.3 11.1 165 119-293 6-181 (638)
10 PRK00095 mutL DNA mismatch rep 99.2 4.9E-11 1.1E-15 137.3 13.4 143 119-269 5-157 (617)
11 TIGR00585 mutl DNA mismatch re 99.2 8.5E-11 1.8E-15 124.6 13.6 142 119-268 5-157 (312)
12 PF07496 zf-CW: CW-type Zinc F 99.1 3.4E-11 7.4E-16 95.5 2.7 48 542-592 2-49 (50)
13 KOG1979 DNA mismatch repair pr 99.1 2.9E-10 6.3E-15 126.6 9.0 170 119-296 10-188 (694)
14 COG1389 DNA topoisomerase VI, 99.0 7.7E-10 1.7E-14 120.9 10.7 95 136-231 38-140 (538)
15 COG3290 CitA Signal transducti 98.6 8.7E-08 1.9E-12 107.4 7.9 91 131-229 425-520 (537)
16 PRK14868 DNA topoisomerase VI 98.6 2.8E-07 6E-12 107.2 11.4 97 133-231 45-149 (795)
17 KOG1978 DNA mismatch repair pr 98.6 1.6E-07 3.4E-12 107.2 8.8 139 120-266 4-153 (672)
18 KOG0019 Molecular chaperone (H 98.6 1.3E-07 2.8E-12 106.5 8.0 109 137-249 60-190 (656)
19 PF02518 HATPase_c: Histidine 98.5 3.7E-07 8E-12 81.1 8.3 92 135-230 6-100 (111)
20 TIGR01052 top6b DNA topoisomer 98.5 5.3E-07 1.2E-11 101.3 9.6 99 132-231 26-132 (488)
21 PRK04184 DNA topoisomerase VI 98.4 6.1E-07 1.3E-11 101.8 9.0 97 135-231 37-142 (535)
22 PRK05559 DNA topoisomerase IV 98.4 3.7E-07 7.9E-12 105.8 5.7 111 113-230 17-140 (631)
23 KOG0020 Endoplasmic reticulum 98.3 5E-07 1.1E-11 99.6 5.5 91 138-231 99-217 (785)
24 TIGR01055 parE_Gneg DNA topois 98.2 1.6E-06 3.5E-11 100.4 6.8 108 113-231 13-134 (625)
25 PRK14867 DNA topoisomerase VI 98.1 6E-06 1.3E-10 95.7 8.5 93 137-230 39-139 (659)
26 PRK05644 gyrB DNA gyrase subun 98.1 4.6E-06 9.9E-11 97.0 7.6 111 113-231 17-141 (638)
27 TIGR01059 gyrB DNA gyrase, B s 98.0 9.9E-06 2.1E-10 94.5 7.1 89 137-231 33-134 (654)
28 smart00433 TOP2c Topoisomerase 98.0 6.1E-06 1.3E-10 95.2 5.0 88 138-231 5-105 (594)
29 PRK14939 gyrB DNA gyrase subun 97.9 1.2E-05 2.7E-10 94.6 6.5 111 113-231 16-141 (756)
30 PRK10604 sensor protein RstB; 97.9 4.1E-05 8.8E-10 84.1 10.1 92 133-229 318-412 (433)
31 PRK10364 sensor protein ZraS; 97.9 3.5E-05 7.7E-10 84.6 8.5 88 133-229 347-437 (457)
32 PRK09303 adaptive-response sen 97.8 7.2E-05 1.6E-09 81.1 9.4 91 135-229 273-366 (380)
33 PRK11006 phoR phosphate regulo 97.7 6.6E-05 1.4E-09 82.0 8.0 94 133-229 316-412 (430)
34 TIGR02938 nifL_nitrog nitrogen 97.7 0.0001 2.3E-09 79.5 9.3 90 135-229 388-483 (494)
35 PRK09470 cpxA two-component se 97.7 8.5E-05 1.8E-09 80.5 8.3 90 135-229 354-446 (461)
36 PRK15053 dpiB sensor histidine 97.7 8.9E-05 1.9E-09 83.0 8.2 89 136-229 434-528 (545)
37 cd00075 HATPase_c Histidine ki 97.7 0.00021 4.6E-09 59.4 8.5 88 137-228 3-93 (103)
38 TIGR01386 cztS_silS_copS heavy 97.7 0.00014 3.1E-09 78.4 9.1 91 133-226 352-445 (457)
39 PRK11086 sensory histidine kin 97.7 0.00014 2.9E-09 80.6 9.0 86 135-228 434-523 (542)
40 PRK10549 signal transduction h 97.6 0.00014 3.1E-09 79.2 8.2 93 134-229 352-447 (466)
41 COG0642 BaeS Signal transducti 97.6 0.00018 3.9E-09 71.9 7.9 88 133-228 227-317 (336)
42 smart00387 HATPase_c Histidine 97.6 0.0004 8.7E-09 58.7 8.7 88 136-227 7-97 (111)
43 PRK10755 sensor protein BasS/P 97.6 0.00022 4.8E-09 75.5 8.3 90 133-229 246-338 (356)
44 PRK09467 envZ osmolarity senso 97.5 0.00023 5E-09 77.0 8.4 89 134-229 331-422 (435)
45 TIGR03785 marine_sort_HK prote 97.5 0.00028 6E-09 83.1 9.3 93 134-229 597-692 (703)
46 TIGR02966 phoR_proteo phosphat 97.5 0.00038 8.3E-09 71.1 8.7 94 133-229 228-324 (333)
47 PRK11073 glnL nitrogen regulat 97.5 0.00032 6.9E-09 73.6 7.9 88 135-228 238-336 (348)
48 COG0187 GyrB Type IIA topoisom 97.4 0.00014 3.1E-09 83.3 4.9 88 138-231 40-140 (635)
49 PRK11100 sensory histidine kin 97.4 0.00041 9E-09 75.1 8.2 93 133-229 367-462 (475)
50 PRK13837 two-component VirA-li 97.4 0.00052 1.1E-08 81.9 9.8 89 134-229 560-664 (828)
51 PRK11360 sensory histidine kin 97.4 0.00058 1.3E-08 75.4 9.3 87 135-229 501-590 (607)
52 PRK11091 aerobic respiration c 97.4 0.00061 1.3E-08 80.2 9.5 92 135-229 399-494 (779)
53 PRK10815 sensor protein PhoQ; 97.3 0.00049 1.1E-08 77.4 8.2 85 136-229 380-467 (485)
54 PRK15347 two component system 97.3 0.00073 1.6E-08 80.3 9.9 89 133-229 512-603 (921)
55 PRK09835 sensor kinase CusS; P 97.3 0.00065 1.4E-08 74.3 8.7 92 133-227 374-468 (482)
56 TIGR02916 PEP_his_kin putative 97.3 0.0004 8.7E-09 81.0 6.8 86 135-229 580-669 (679)
57 COG4191 Signal transduction hi 97.3 0.00053 1.1E-08 78.3 7.4 85 137-227 500-588 (603)
58 PRK10547 chemotaxis protein Ch 97.3 0.0013 2.8E-08 77.3 10.6 90 137-229 388-512 (670)
59 TIGR01058 parE_Gpos DNA topois 97.2 0.00035 7.6E-09 81.5 5.8 88 137-230 37-137 (637)
60 PRK11107 hybrid sensory histid 97.2 0.0011 2.4E-08 78.7 10.1 94 134-229 408-507 (919)
61 PRK10618 phosphotransfer inter 97.2 0.0012 2.7E-08 79.8 10.2 93 134-229 565-661 (894)
62 PRK11466 hybrid sensory histid 97.2 0.0015 3.3E-08 78.0 10.1 89 133-229 560-651 (914)
63 TIGR02956 TMAO_torS TMAO reduc 97.1 0.0016 3.4E-08 78.2 9.7 91 133-229 578-672 (968)
64 KOG1977 DNA mismatch repair pr 97.1 0.00047 1E-08 79.5 4.6 90 133-232 21-116 (1142)
65 PRK10841 hybrid sensory kinase 97.1 0.0015 3.3E-08 79.2 9.3 92 134-229 562-656 (924)
66 PRK10337 sensor protein QseC; 97.0 0.0015 3.2E-08 71.2 7.6 87 133-229 351-440 (449)
67 PRK13557 histidine kinase; Pro 96.9 0.0026 5.6E-08 70.2 8.2 90 135-229 278-383 (540)
68 PTZ00109 DNA gyrase subunit b; 96.9 0.00077 1.7E-08 80.5 4.2 120 99-230 99-272 (903)
69 PRK10490 sensor protein KdpD; 96.8 0.0024 5.3E-08 77.3 8.0 92 133-229 777-871 (895)
70 PRK09959 hybrid sensory histid 96.7 0.005 1.1E-07 76.0 9.7 94 134-229 828-925 (1197)
71 COG2205 KdpD Osmosensitive K+ 96.7 0.0056 1.2E-07 72.4 9.0 90 133-230 774-869 (890)
72 COG4585 Signal transduction hi 96.5 0.0056 1.2E-07 66.1 7.2 75 133-228 278-353 (365)
73 COG0643 CheA Chemotaxis protei 96.4 0.01 2.2E-07 70.4 9.2 94 138-236 436-567 (716)
74 PRK11644 sensory histidine kin 96.4 0.009 1.9E-07 67.7 7.9 69 135-226 411-482 (495)
75 PLN03237 DNA topoisomerase 2; 96.2 0.0088 1.9E-07 74.9 7.5 86 137-227 80-179 (1465)
76 PRK13560 hypothetical protein; 96.2 0.0061 1.3E-07 70.8 5.8 73 138-227 715-792 (807)
77 PHA02569 39 DNA topoisomerase 96.2 0.0042 9.1E-08 72.2 4.2 86 138-230 49-152 (602)
78 PLN03128 DNA topoisomerase 2; 96.1 0.011 2.4E-07 73.1 7.6 87 137-228 55-155 (1135)
79 PTZ00108 DNA topoisomerase 2-l 96.1 0.011 2.3E-07 74.2 7.4 88 137-229 60-164 (1388)
80 PRK10600 nitrate/nitrite senso 96.1 0.017 3.6E-07 66.0 8.3 74 134-229 469-545 (569)
81 TIGR01925 spIIAB anti-sigma F 96.0 0.025 5.4E-07 52.3 7.7 83 137-228 42-126 (137)
82 PF13581 HATPase_c_2: Histidin 95.7 0.035 7.7E-07 50.4 7.2 79 136-224 33-113 (125)
83 KOG0787 Dehydrogenase kinase [ 95.6 0.024 5.3E-07 62.1 6.6 90 137-228 263-368 (414)
84 COG5000 NtrY Signal transducti 95.6 0.029 6.4E-07 64.7 7.4 88 135-228 601-695 (712)
85 PRK03660 anti-sigma F factor; 95.4 0.051 1.1E-06 50.7 7.4 83 137-228 42-126 (146)
86 TIGR01924 rsbW_low_gc serine-p 95.4 0.033 7.1E-07 54.0 6.2 85 137-226 45-131 (159)
87 PRK04069 serine-protein kinase 95.4 0.024 5.2E-07 54.8 5.1 85 137-226 45-131 (161)
88 COG3850 NarQ Signal transducti 95.2 0.042 9.2E-07 62.6 7.0 84 125-230 474-558 (574)
89 COG4251 Bacteriophytochrome (l 94.1 0.095 2E-06 60.9 6.5 104 117-229 621-730 (750)
90 COG4192 Signal transduction hi 93.9 0.11 2.4E-06 58.5 6.3 61 137-198 567-627 (673)
91 COG2972 Predicted signal trans 93.6 0.083 1.8E-06 59.3 5.1 72 134-215 350-422 (456)
92 PRK10935 nitrate/nitrite senso 93.5 0.18 3.9E-06 56.8 7.4 74 135-229 472-548 (565)
93 PRK13559 hypothetical protein; 92.8 0.22 4.7E-06 52.9 6.4 74 136-228 269-348 (361)
94 COG2172 RsbW Anti-sigma regula 91.7 0.54 1.2E-05 45.4 7.1 87 135-230 41-130 (146)
95 COG3852 NtrB Signal transducti 91.2 0.4 8.6E-06 51.9 6.0 86 137-228 244-343 (363)
96 COG5002 VicK Signal transducti 91.1 0.51 1.1E-05 51.9 6.7 87 137-227 345-435 (459)
97 COG3920 Signal transduction hi 89.5 0.55 1.2E-05 48.2 5.3 48 137-184 125-174 (221)
98 COG3851 UhpB Signal transducti 89.5 0.76 1.6E-05 50.8 6.5 70 135-227 411-483 (497)
99 PF14501 HATPase_c_5: GHKL dom 84.4 3.9 8.5E-05 36.1 7.1 76 137-226 8-88 (100)
100 COG4564 Signal transduction hi 79.1 4.5 9.8E-05 44.5 6.4 77 136-230 357-438 (459)
101 PF11559 ADIP: Afadin- and alp 66.7 11 0.00024 36.1 5.3 25 629-653 126-150 (151)
102 COG3275 LytS Putative regulato 64.5 8.9 0.00019 44.0 4.7 45 138-184 460-507 (557)
103 COG4026 Uncharacterized protei 59.8 18 0.00039 37.8 5.5 40 601-640 132-174 (290)
104 KOG0355 DNA topoisomerase type 58.7 25 0.00054 42.7 7.2 48 136-186 55-102 (842)
105 COG5178 PRP8 U5 snRNP spliceos 55.8 26 0.00056 44.1 6.7 29 133-163 117-145 (2365)
106 PRK10884 SH3 domain-containing 49.9 28 0.00061 35.8 5.1 51 599-649 88-138 (206)
107 KOG3088 Secretory carrier memb 48.6 28 0.0006 37.7 4.9 32 601-647 61-92 (313)
108 KOG3088 Secretory carrier memb 46.3 25 0.00055 38.0 4.2 40 605-659 58-97 (313)
109 PF04859 DUF641: Plant protein 44.1 20 0.00043 34.5 2.8 29 629-657 94-122 (131)
110 COG1382 GimC Prefoldin, chaper 43.7 38 0.00083 32.1 4.5 23 599-621 72-94 (119)
111 PF15254 CCDC14: Coiled-coil d 38.6 40 0.00087 40.8 4.7 42 602-654 506-547 (861)
112 COG1579 Zn-ribbon protein, pos 38.6 46 0.001 35.1 4.7 55 602-656 108-162 (239)
113 PF09177 Syntaxin-6_N: Syntaxi 37.4 82 0.0018 28.1 5.6 53 601-654 43-95 (97)
114 PF12329 TMF_DNA_bd: TATA elem 36.5 75 0.0016 27.5 5.0 51 605-655 23-73 (74)
115 PF04508 Pox_A_type_inc: Viral 34.2 39 0.00085 23.3 2.2 16 601-616 5-20 (23)
116 PF08946 Osmo_CC: Osmosensory 30.9 70 0.0015 25.6 3.4 24 602-625 17-40 (46)
117 PF00628 PHD: PHD-finger; Int 30.4 38 0.00081 26.2 2.0 38 539-577 10-47 (51)
118 smart00249 PHD PHD zinc finger 30.0 32 0.00069 25.2 1.4 36 539-576 10-45 (47)
119 COG1422 Predicted membrane pro 28.2 87 0.0019 32.3 4.6 19 603-621 71-89 (201)
120 PF01119 DNA_mis_repair: DNA m 27.8 1.5E+02 0.0032 27.2 5.8 77 425-501 26-118 (119)
121 PRK00295 hypothetical protein; 25.7 2.3E+02 0.005 24.1 6.0 54 600-657 1-54 (68)
122 KOG1925 Rac1 GTPase effector F 25.4 85 0.0018 36.5 4.3 59 69-128 262-321 (817)
123 PRK11020 hypothetical protein; 25.1 1.8E+02 0.0039 27.6 5.6 52 600-651 1-53 (118)
124 PF13397 DUF4109: Domain of un 25.0 1.1E+02 0.0024 28.6 4.2 57 557-616 38-100 (105)
125 PRK14145 heat shock protein Gr 25.0 1.4E+02 0.0031 30.6 5.5 48 595-649 43-90 (196)
126 PF05529 Bap31: B-cell recepto 24.4 1.2E+02 0.0025 30.4 4.7 55 599-656 120-174 (192)
127 PF03233 Cauli_AT: Aphid trans 24.2 2.1E+02 0.0046 28.7 6.3 78 558-654 83-160 (163)
128 PRK00095 mutL DNA mismatch rep 22.4 4.6E+02 0.01 31.2 9.8 81 425-506 233-326 (617)
129 PF10234 Cluap1: Clusterin-ass 22.2 1.5E+02 0.0032 32.0 5.1 50 602-655 167-216 (267)
130 KOG4403 Cell surface glycoprot 22.1 1.4E+02 0.003 34.2 5.1 52 605-656 260-322 (575)
131 PF10226 DUF2216: Uncharacteri 22.0 87 0.0019 32.1 3.2 33 602-634 106-138 (195)
132 PRK14158 heat shock protein Gr 21.1 2.4E+02 0.0053 28.9 6.3 39 604-653 40-78 (194)
133 PRK00736 hypothetical protein; 21.0 2.7E+02 0.0058 23.7 5.6 53 600-656 1-53 (68)
No 1
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=5e-61 Score=544.76 Aligned_cols=412 Identities=52% Similarity=0.828 Sum_probs=376.0
Q ss_pred chhhhhhhhhhcccCCCCCCCCCCccCcccceeeeeChhhhhhhhccchhHHHHHHHHhccchhhhhcCCceEEEEEEec
Q 045475 85 EPVLRACKQFWKAGDYEGGNAGDSLSNSVGMDHLRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYVQVDLLKN 164 (662)
Q Consensus 85 ~~~~~~~~~fw~ag~~~~~~~~~~~~~~~~~~~~~~~p~fL~s~stsh~~pf~AIaELVDNAiDA~~agAt~V~I~i~~~ 164 (662)
++.+..||||||||+|..++.+...+..+|..|+.+||+|||+|+|+|+|.++|++||||||+|.+.++|+.+.|+....
T Consensus 97 ~l~~~~c~sfwKag~~~~a~~~~~~~~~G~~~~iivhpkflhsnatshk~a~~a~aeLldnalDEi~~~~tf~~vd~I~p 176 (775)
T KOG1845|consen 97 SLEAIYCRSFWKAGDYLLAELDVIIGKSGGTLHIIVHPKFLHSNATSHKWAKGAIAELLDNALDEITNGATFVRVDYINP 176 (775)
T ss_pred ccchhhhcCcccccchhcccccceeccCCceeEEEEehhhhcCCCcccccccChhhhhccccccccccccceEEeeeecc
Confidence 55689999999999999999999999999999999999999999999999999999999999999999999988876654
Q ss_pred CCCC-eeEEEEE-----ECCCCCCHHHHHhhhhccccccccCCCccCcccccccccccccCCEEEEEeeeCCCCCceeee
Q 045475 165 KTDG-THMLLVE-----DNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGFKTSTMRLGADVIVFSRCQGTDGKCSTQ 238 (662)
Q Consensus 165 ~~~g-~~~L~I~-----DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g~~G~~~t~ 238 (662)
..+. ...++|. |||+||.++.+..+|.+|++.|..-..++|+||+|||++.|++|++++|++|..+..|...++
T Consensus 177 ~~d~~i~a~~v~~~~~s~~gg~~~~~~i~~~m~l~~~~k~e~~~tv~q~~~gfktst~rlGa~~i~~~R~~~~~~~kstq 256 (775)
T KOG1845|consen 177 VMDIFIRALVVQLKRISDDGGGMKPEVIRKCMSLGYSSKKEANSTVGQYGNGFKTSTMRLGADAIVFSRCESRRGLKSTQ 256 (775)
T ss_pred cccccceeEEeeccceeccccccCHHHHHHHHHhhhhhhhhhhhhhhhhccccccchhhhccceeEeehhhhhccCCcce
Confidence 4444 4556666 779999999999999999999875567899999999999999999999999987777888999
Q ss_pred eeccceeeeecCCCCcceEEec----cccccccccccccccCCchhhhhhhhh-----hhhcCCCCChHHHHHH------
Q 045475 239 SIGMLSYTFLRGTGKEDIVVPM----VDYEKRGEHWDMLVRSSPEDWSRNLET-----VVQWSPYTSEEDLTQQ------ 303 (662)
Q Consensus 239 siglLS~Tfl~~~~~~dI~VPi----l~~~~~~~~~~~~~~~~~~dw~~~l~~-----Il~ySpf~se~eLl~q------ 303 (662)
++|+||++||+.++.++++||+ .+++...+.|..+.+.+..+|..++.+ +++|+||.++.+++.|
T Consensus 257 siglls~tfL~~t~~~d~iv~~~~i~~~~e~~~~~~~~i~~~s~~~~~~n~~i~~~~~~L~w~p~~~~~~~l~q~~v~~~ 336 (775)
T KOG1845|consen 257 SIGLLSYTFLRKTGKRDFIVPMRLIKMDYEKSDQLWQGILYKSGVDWAVNLEIEVTERFLKWSPYSHLLDLLGQNSVQYS 336 (775)
T ss_pred eEEEEEEeeeccccCCceeEecchhhhhhhcccccccceeeccccccceeeeeHHHHHHhhcCccccHHHHhhhhhhhhc
Confidence 9999999999999999999999 999988899999888888999999888 9999999999999988
Q ss_pred ---------hcccCCCceEEEEecc--ccccCCcccccCCCCcccccccccchhhhhHHhhhcCCCCchhhhhHHHHHHH
Q 045475 304 ---------FNFMKDQGTRIVMYNL--WEDDEGKLEMDFDSDPHDIQLRGVNREEKNIEMAKKYPNSRHFLTYRHSLRSY 372 (662)
Q Consensus 304 ---------fd~I~~~GT~III~nL--w~~~dg~~Eldf~td~~DI~i~~~~~~~k~~q~a~~~p~~~~~~~~~~SLRaY 372 (662)
|+.+.++||.||+||+ |..+.|.+|+||+.++++|.. .+.++++.|
T Consensus 337 ~~~~ef~~~~~~~~~~g~~~I~Y~~~~~~~~~g~~e~df~l~~~~i~~-----------------------~~~~~~~s~ 393 (775)
T KOG1845|consen 337 KDFPEFGHQFNIMNKPGTDVIIYNLRRWKGDEGILELDFDLDPHVIPW-----------------------TYCHSHLSE 393 (775)
T ss_pred cccchhcchhhhccCCCceeeeechhhhcccccceeeccccCcccccc-----------------------cchhhhhhc
Confidence 8888999999999999 999999999999999887761 245789999
Q ss_pred HHHhhhcCCCceEEEEcCeeecccccccccccccceeecccCCC-C----cceEEEEeeccccccccccccceEEEEcCc
Q 045475 373 ASILYLRLPPGFRIILRGQDVEHHNIVNDMMLIKELRYKPTSLP-E----RMAANVTIGFVKDAHYHIDIQGFNVYHKNR 447 (662)
Q Consensus 373 lSiLYLr~pp~fkI~LnG~~V~~~~i~~~L~~~e~i~ykP~~~p-~----~~~v~it~Gf~~~~~~~~~~qGf~VY~nnR 447 (662)
.++||..++++|++++.|+++.++.+.+..+..+...|+|+..+ . .+......||.+.++++.+.+|++|||++|
T Consensus 394 ~sil~~~~~~~~~~v~~~~~~~h~sv~~~q~~~~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~~~ 473 (775)
T KOG1845|consen 394 ASILLLTRRLRFKSVLRGKDVEHHSVINYQVQTEEILYQPQRAPADGKQRLIKLSPKPGFVKDAPRPIDVQQFNVSHGPR 473 (775)
T ss_pred ccccchhccccchhccccccchhhhHHHHHHHHHHHhcccccccCCccchhhcccCCCCcccccCCCCCccCCccccCCc
Confidence 99999999999999999999999999999999988999998876 2 233444678888888999999999999999
Q ss_pred ccc----ccccccccCCCCCceeEEEEecCccCCCCCcccccccHHHHHHHHHHHHHHHHHHhhccccccccccCC
Q 045475 448 LIK----PFWRVWNAAGSDGRGAIGVLEANFVEPAHDKQGFERTPVLARLEARLVAIQKEYWCTNCHEVGYAPRRH 519 (662)
Q Consensus 448 LI~----~fekVg~~~~s~grGVIGVleanfLePthnKQdFe~t~~y~~L~~~L~e~l~eYW~~~~~~igy~~~~~ 519 (662)
||. ++||.++..++.++++++++.+||.+++|++|||+.+....+.+.++.++++.||...|++++|+....
T Consensus 474 lie~~~~~~~k~~n~~~s~~~~~~~il~~n~~~~a~~~~~v~~~~v~a~~es~~~~~~~~~~~~~~~~i~~~~~q~ 549 (775)
T KOG1845|consen 474 LIEHGCRPFVKIDNATGSLGQAVIPILVGNFVETAPDSQGVEKTIVLASSESRDKQSLNTYEEKKCLRIDEAGRQL 549 (775)
T ss_pred chhhcccceeeecCCCccccccccceecccccccCCCccccccccccccchhhhhhcccccccccccccCccchhh
Confidence 999 999999999999999999999999999999999999999999999999999999999999999988753
No 2
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=4.9e-28 Score=276.31 Aligned_cols=366 Identities=20% Similarity=0.222 Sum_probs=272.3
Q ss_pred EEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccccccccccCCEEEEEeeeCCCCCceeeeeeccceeeeecC
Q 045475 171 MLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGFKTSTMRLGADVIVFSRCQGTDGKCSTQSIGMLSYTFLRG 250 (662)
Q Consensus 171 ~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g~~G~~~t~siglLS~Tfl~~ 250 (662)
+|++.|||.||+++++..+..|+.. ...+|.||+|+|+++|++|+++.++|+... +++++++|+||++.
T Consensus 1 ~l~~~Ddg~Gms~d~a~~~~~f~~~-----~~~ig~ygnG~ksgs~r~gkd~~~~tk~~~------~~s~~~~sqt~~e~ 69 (775)
T KOG1845|consen 1 MLCFLDDGLGMSPDEAPKAINFAVG-----LYGIGDYGNGLKSGSMRIGKDFILFTKKES------TMSCLFLSQTFHES 69 (775)
T ss_pred CcccccCCCCcCchhhhhhhhhccc-----ccccccccCcccccccccCcccceeecccc------ccceeeeecccccc
Confidence 4788999999999999999988433 357999999999999999999999999765 68999999999999
Q ss_pred CCCcceEEeccccccccccccccccCCchhhhhhhhhhhhcCCCCChHHHHHHhccc-CCCc-eEEEEeccccccCCccc
Q 045475 251 TGKEDIVVPMVDYEKRGEHWDMLVRSSPEDWSRNLETVVQWSPYTSEEDLTQQFNFM-KDQG-TRIVMYNLWEDDEGKLE 328 (662)
Q Consensus 251 ~~~~dI~VPil~~~~~~~~~~~~~~~~~~dw~~~l~~Il~ySpf~se~eLl~qfd~I-~~~G-T~III~nLw~~~dg~~E 328 (662)
...+.++||+..|+..++. +. ++.+..++++|+.+|+|.+++.++++++.+ +..| |.+||+|+.+-..|.++
T Consensus 70 ~~~~~vvvP~~t~~~~~~~----~~--~~k~~~~l~~~~c~sfwKag~~~~a~~~~~~~~~G~~~~iivhpkflhsnats 143 (775)
T KOG1845|consen 70 EADDAVVVPCPTFNPRTRE----IV--TEKFAFSLEAIYCRSFWKAGDYLLAELDVIIGKSGGTLHIIVHPKFLHSNATS 143 (775)
T ss_pred cccccceeccccccccccc----cc--ccccccccchhhhcCcccccchhcccccceeccCCceeEEEEehhhhcCCCcc
Confidence 9999999999999976654 22 266788999999999999999999999998 5666 99999999999999999
Q ss_pred ccCCCCcccccccccchhhhhHHhhhcCCCCchhhhhHHHHHHHHHHhhhcCCCceEEEEcCeeecccccccccccccce
Q 045475 329 MDFDSDPHDIQLRGVNREEKNIEMAKKYPNSRHFLTYRHSLRSYASILYLRLPPGFRIILRGQDVEHHNIVNDMMLIKEL 408 (662)
Q Consensus 329 ldf~td~~DI~i~~~~~~~k~~q~a~~~p~~~~~~~~~~SLRaYlSiLYLr~pp~fkI~LnG~~V~~~~i~~~L~~~e~i 408 (662)
++|..|+.||++.++-.+ +++ -+.|+.++|+. |.|.|++++..|++.+++.+. .
T Consensus 144 hk~a~~a~aeLldnalDE---------i~~----------~~tf~~vd~I~--p~~d~~i~a~~v~~~~~s~~g-----g 197 (775)
T KOG1845|consen 144 HKWAKGAIAELLDNALDE---------ITN----------GATFVRVDYIN--PVMDIFIRALVVQLKRISDDG-----G 197 (775)
T ss_pred cccccChhhhhccccccc---------ccc----------ccceEEeeeec--ccccccceeEEeeccceeccc-----c
Confidence 999999999999875322 222 22458888987 999999999999988754322 1
Q ss_pred eecccCC------C--Cc-----ceEEEEeeccccccccccccceEEEEcCccccccccccccCCCCCceeEEEEecCcc
Q 045475 409 RYKPTSL------P--ER-----MAANVTIGFVKDAHYHIDIQGFNVYHKNRLIKPFWRVWNAAGSDGRGAIGVLEANFV 475 (662)
Q Consensus 409 ~ykP~~~------p--~~-----~~v~it~Gf~~~~~~~~~~qGf~VY~nnRLI~~fekVg~~~~s~grGVIGVleanfL 475 (662)
..+|+.. . .+ ...+...||..... .-|..+|+-.|.- ...+..+.+.||.+...||
T Consensus 198 ~~~~~~i~~~m~l~~~~k~e~~~tv~q~~~gfktst~----rlGa~~i~~~R~~-------~~~~~kstqsiglls~tfL 266 (775)
T KOG1845|consen 198 GMKPEVIRKCMSLGYSSKKEANSTVGQYGNGFKTSTM----RLGADAIVFSRCE-------SRRGLKSTQSIGLLSYTFL 266 (775)
T ss_pred ccCHHHHHHHHHhhhhhhhhhhhhhhhhccccccchh----hhccceeEeehhh-------hhccCCcceeEEEEEEeee
Confidence 1112111 0 00 01112233333222 1344455544440 1223344445555555555
Q ss_pred CCCCCcccccc-----------------------------------------cHHHHHHHHHHHHHHHHHHhhccccccc
Q 045475 476 EPAHDKQGFER-----------------------------------------TPVLARLEARLVAIQKEYWCTNCHEVGY 514 (662)
Q Consensus 476 ePthnKQdFe~-----------------------------------------t~~y~~L~~~L~e~l~eYW~~~~~~igy 514 (662)
++|+ |+||-. -..|..+...|.+.+-.||+.. .++||
T Consensus 267 ~~t~-~~d~iv~~~~i~~~~e~~~~~~~~i~~~s~~~~~~n~~i~~~~~~L~w~p~~~~~~~l~q~~v~~~~~~-~ef~~ 344 (775)
T KOG1845|consen 267 RKTG-KRDFIVPMRLIKMDYEKSDQLWQGILYKSGVDWAVNLEIEVTERFLKWSPYSHLLDLLGQNSVQYSKDF-PEFGH 344 (775)
T ss_pred cccc-CCceeEecchhhhhhhcccccccceeeccccccceeeeeHHHHHHhhcCccccHHHHhhhhhhhhcccc-chhcc
Confidence 5555 555543 3445666777777777888654 88888
Q ss_pred cccCCCCCCCCcccccccCcccccCcceeeecCcccccccccccccchhhhhcccccccccccCCCccccccCCCCCCCC
Q 045475 515 APRRHSKTPVSSKKESKTSDKDKSNVHQILKGGECSSFKMEYISEFDKRLQEESASEDRSCHEASPAIDESQRGPGSHGS 594 (662)
Q Consensus 515 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~vq~~~c~~w~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~ 594 (662)
..+.+.+.+.. .-.|.+++.+.+....+||.|.+|+ .+| | ..||..++.++
T Consensus 345 ~~~~~~~~g~~---~I~Y~~~~~~~~~g~~e~df~l~~~---~i~-------------~----------~~~~~~~s~~s 395 (775)
T KOG1845|consen 345 QFNIMNKPGTD---VIIYNLRRWKGDEGILELDFDLDPH---VIP-------------W----------TYCHSHLSEAS 395 (775)
T ss_pred hhhhccCCCce---eeeechhhhcccccceeeccccCcc---ccc-------------c----------cchhhhhhccc
Confidence 88877754443 3346667889999999999999999 777 4 78999999999
Q ss_pred CCCcchh------------HHHHHHHHHHHHHHHhhhhh
Q 045475 595 SPHGTRN------------LLSKLKEVENKLRELEKKEK 621 (662)
Q Consensus 595 ~~~g~~~------------l~~~~~~~~~~~~~~~~~~~ 621 (662)
+|++|+. +..++-+.|.|+++..++++
T Consensus 396 il~~~~~~~~~~v~~~~~~~h~sv~~~q~~~~~~~~~p~ 434 (775)
T KOG1845|consen 396 ILLLTRRLRFKSVLRGKDVEHHSVINYQVQTEEILYQPQ 434 (775)
T ss_pred ccchhccccchhccccccchhhhHHHHHHHHHHHhcccc
Confidence 9999987 66778888999998888876
No 3
>PRK05218 heat shock protein 90; Provisional
Probab=99.72 E-value=1.1e-16 Score=183.31 Aligned_cols=276 Identities=20% Similarity=0.264 Sum_probs=161.1
Q ss_pred hhhhhhcc-chhHHHHHHHHhccchhhhhc-------------CCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhh
Q 045475 124 FLHSNATS-HKWALGAFAELLDNSLDEVCN-------------GATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQC 189 (662)
Q Consensus 124 fL~s~sts-h~~pf~AIaELVDNAiDA~~a-------------gAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~ 189 (662)
.|+-++.+ |+.+..+|.|||.||+||+.. ++....|.|..+. +...|.|.|||.||+.+++...
T Consensus 15 ll~ll~~~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~--~~~~i~I~DnG~GMt~eel~~~ 92 (613)
T PRK05218 15 LLHLMIHSLYSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDK--EARTLTISDNGIGMTREEVIEN 92 (613)
T ss_pred HHHHHhhhhcCCchHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcC--CCCeEEEEECCCCCCHHHHHHH
Confidence 34445544 677778999999999999742 2344566665543 3346999999999999999876
Q ss_pred h-hccccccc-----------cCCCccCcccccccccccccCCEEEEEeeeCC-CC-CceeeeeeccceeeeecCCCCcc
Q 045475 190 M-SLGYSAKS-----------KLANTIGQYGNGFKTSTMRLGADVIVFSRCQG-TD-GKCSTQSIGMLSYTFLRGTGKED 255 (662)
Q Consensus 190 ~-~~G~S~K~-----------~~~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g-~~-G~~~t~siglLS~Tfl~~~~~~d 255 (662)
+ ++|+|++. .+...+|+||+||.+ +|.++.+++|.||+.+ .. |.+|..
T Consensus 93 l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S-~f~va~~v~V~Sr~~~~~~~~~~w~~----------------- 154 (613)
T PRK05218 93 LGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYS-AFMVADKVTVITRSAGPAAEAVRWES----------------- 154 (613)
T ss_pred HHhhccccchhHHHHhhcccccccccccccCcCchh-hhhccCEEEEEEcCCCCCCceEEEEE-----------------
Confidence 5 58887431 134579999999975 6679999999999865 21 222210
Q ss_pred eEEeccccccccccccccccCCchhhhhhhhhhhhcCCCCChHHHHHHhcccCCCceEEEEeccccccCCcccccCCCCc
Q 045475 256 IVVPMVDYEKRGEHWDMLVRSSPEDWSRNLETVVQWSPYTSEEDLTQQFNFMKDQGTRIVMYNLWEDDEGKLEMDFDSDP 335 (662)
Q Consensus 256 I~VPil~~~~~~~~~~~~~~~~~~dw~~~l~~Il~ySpf~se~eLl~qfd~I~~~GT~III~nLw~~~dg~~Eldf~td~ 335 (662)
.+. +... ..+. +. ..+||+|.|+ |.... .+ |
T Consensus 155 ----------~g~------------~~~~------i~~~----------~~-~~~GT~I~l~-Lk~~~---~e--~---- 185 (613)
T PRK05218 155 ----------DGE------------GEYT------IEEI----------EK-EERGTEITLH-LKEDE---DE--F---- 185 (613)
T ss_pred ----------eCC------------ceeE------EeEC----------CC-CCCCcEEEEE-ECcch---hh--h----
Confidence 100 0000 0000 00 2689999985 32211 01 1
Q ss_pred ccccccccchhhhhHHhhhcCCCCchhhhhHHHHHHHHHHhhhcCCCceEEEEcCe---eeccccc-----ccccccccc
Q 045475 336 HDIQLRGVNREEKNIEMAKKYPNSRHFLTYRHSLRSYASILYLRLPPGFRIILRGQ---DVEHHNI-----VNDMMLIKE 407 (662)
Q Consensus 336 ~DI~i~~~~~~~k~~q~a~~~p~~~~~~~~~~SLRaYlSiLYLr~pp~fkI~LnG~---~V~~~~i-----~~~L~~~e~ 407 (662)
.+ ....+.-++.|+. |+.+| |.++|. .+..... .+++...+.
T Consensus 186 ---------------------~e---~~~i~~li~kys~--~l~~P----I~~~~~~~~~in~~~~~w~~~~~~i~~~~~ 235 (613)
T PRK05218 186 ---------------------LD---EWRIRSIIKKYSD--FIPVP----IKLEKEEEETINSASALWTRSKSEITDEEY 235 (613)
T ss_pred ---------------------cC---HHHHHHHHHHHHh--cCCCC----EEEecccceeecCCccceecCCccccHHHH
Confidence 00 0123456788886 55433 555553 2221111 001110110
Q ss_pred -eeeccc----CCC-----Ccc--eEEEEeeccccccc-------cccccceEEEEcCccccccc-cccccCCCCCceeE
Q 045475 408 -LRYKPT----SLP-----ERM--AANVTIGFVKDAHY-------HIDIQGFNVYHKNRLIKPFW-RVWNAAGSDGRGAI 467 (662)
Q Consensus 408 -i~ykP~----~~p-----~~~--~v~it~Gf~~~~~~-------~~~~qGf~VY~nnRLI~~fe-kVg~~~~s~grGVI 467 (662)
..|+-. ..| -+. .+.+ -|++--|.. ....+|+.+|.|+|+|.-.- .+.+++ .+=|-
T Consensus 236 ~~fy~~~~~~~~~pl~~i~~~~e~~~~~-~gll~iP~~~~~~~~~~~~~~~~~lyvn~v~I~d~~~~lLP~w---l~Fv~ 311 (613)
T PRK05218 236 KEFYKHLAHDFDDPLFWIHNNVEGPFEY-TGLLYIPKKAPFDLFNRDRKGGLKLYVKRVFIMDDAEELLPEY---LRFVK 311 (613)
T ss_pred HHHhhhhcccccCCcEEEEcccCCceEE-EEEEEeCCCCccchhhhcccccEEEEECcEEeeCchhhhchHH---HhheE
Confidence 111111 001 001 1111 122222211 12568999999999995443 355555 45677
Q ss_pred EEEecCccCCCCCcccccccHHHHHHHHHHHHHHH
Q 045475 468 GVLEANFVEPAHDKQGFERTPVLARLEARLVAIQK 502 (662)
Q Consensus 468 GVleanfLePthnKQdFe~t~~y~~L~~~L~e~l~ 502 (662)
|||+++.|+|+-+-..+..+..++++++.|.+.+.
T Consensus 312 GVVDs~dLplnvSRE~lq~~~~l~~i~~~l~~kv~ 346 (613)
T PRK05218 312 GVIDSEDLPLNVSREILQEDRVVKKIRKAITKKVL 346 (613)
T ss_pred EEeecCCCCCccCHHHHhcCHHHHHHHHHHHHHHH
Confidence 99999999999999999999988887777776555
No 4
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.65 E-value=8.7e-17 Score=150.82 Aligned_cols=93 Identities=34% Similarity=0.637 Sum_probs=79.1
Q ss_pred HHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhcccccccc--CCCccCcccccccc
Q 045475 136 LGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSK--LANTIGQYGNGFKT 213 (662)
Q Consensus 136 f~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~--~~~~IG~fG~GlKs 213 (662)
..||+|||+||+|| .|+.|.|.+..+. .+...|.|.|||.||+.+++..++.+|++.+.. ....+|+||+|+|.
T Consensus 4 ~~al~ElI~Ns~DA---~a~~I~I~i~~~~-~~~~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~k~ 79 (137)
T PF13589_consen 4 EDALRELIDNSIDA---GATNIKISIDEDK-KGERYIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGLKL 79 (137)
T ss_dssp THHHHHHHHHHHHH---HHHHEEEEEEEET-TTTTEEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGCGG
T ss_pred HHHHHHHHHHHHHc---cCCEEEEEEEcCC-CCCcEEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEHHH
Confidence 47999999999996 6888999998754 356899999999999999999999999998752 35689999999999
Q ss_pred cccccCCEEEEEeeeCCCC
Q 045475 214 STMRLGADVIVFSRCQGTD 232 (662)
Q Consensus 214 As~rlg~~v~V~Sk~~g~~ 232 (662)
|++++|+.+.|.|++.+..
T Consensus 80 A~~~~~~~~~v~S~~~~~~ 98 (137)
T PF13589_consen 80 AIFSLGDRVEVISKTNGES 98 (137)
T ss_dssp GGGGTEEEEEEEEESTTSS
T ss_pred HHHHhcCEEEEEEEECCCC
Confidence 9999999999999998753
No 5
>PRK14083 HSP90 family protein; Provisional
Probab=99.62 E-value=7.4e-15 Score=167.59 Aligned_cols=103 Identities=24% Similarity=0.422 Sum_probs=78.6
Q ss_pred hhhhhhcc-chhHHHHHHHHhccchhhhhcC-------CceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhh-hhccc
Q 045475 124 FLHSNATS-HKWALGAFAELLDNSLDEVCNG-------ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQC-MSLGY 194 (662)
Q Consensus 124 fL~s~sts-h~~pf~AIaELVDNAiDA~~ag-------At~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~-~~~G~ 194 (662)
.|+.++.+ |+.+..+|.|||.||+||...- ...|.|.+. + .+...|.|.|||.||+.+++.+. ..+|.
T Consensus 12 ll~ll~~~LYs~~~iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~-d--~~~~~l~I~DnGiGmt~eel~~~l~~ig~ 88 (601)
T PRK14083 12 VIDLLSRHLYSSPRVYVRELLQNAVDAITARRALDPTAPGRIRIELT-D--AGGGTLIVEDNGIGLTEEEVHEFLATIGR 88 (601)
T ss_pred HHHHHHHhhcCCcHHHHHHHHHhHHHHHHhhhccCCCCCceEEEEEc-c--CCCcEEEEEeCCCCCCHHHHHHHHhhhcc
Confidence 44555543 7778889999999999997431 125666653 2 24678999999999999999985 56998
Q ss_pred ccccc------CCCccCcccccccccccccCCEEEEEeeeCC
Q 045475 195 SAKSK------LANTIGQYGNGFKTSTMRLGADVIVFSRCQG 230 (662)
Q Consensus 195 S~K~~------~~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g 230 (662)
|+|.. ....||+||+||.+ +|.++..+.|.|+..+
T Consensus 89 S~k~~~~~~~~~~~~IG~FGIGf~S-~F~vad~v~V~Tr~~~ 129 (601)
T PRK14083 89 SSKRDENLGFARNDFLGQFGIGLLS-CFLVADEIVVVSRSAK 129 (601)
T ss_pred chhhhhhhcccccccccccccceEE-EEEecCEEEEEeccCC
Confidence 88743 23569999999975 4559999999999864
No 6
>PTZ00130 heat shock protein 90; Provisional
Probab=99.58 E-value=6.3e-14 Score=162.77 Aligned_cols=124 Identities=20% Similarity=0.286 Sum_probs=86.4
Q ss_pred cCcccceeeeeChhhh-hhhhcc-chhHHHHHHHHhccchhhhhc-------------CCceEEEEEEecCCCCeeEEEE
Q 045475 110 SNSVGMDHLRVHPKFL-HSNATS-HKWALGAFAELLDNSLDEVCN-------------GATYVQVDLLKNKTDGTHMLLV 174 (662)
Q Consensus 110 ~~~~~~~~~~~~p~fL-~s~sts-h~~pf~AIaELVDNAiDA~~a-------------gAt~V~I~i~~~~~~g~~~L~I 174 (662)
++......+++..+=| +-+..+ |+.+-.+|.|||.||.||+.. ....+.|.|..+. ....|+|
T Consensus 62 ~~~~e~~~FQaEv~~Lldiii~sLYS~keIFLRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~--~~~tLtI 139 (814)
T PTZ00130 62 TSGIEQHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANK--EKNILSI 139 (814)
T ss_pred CcccceeehHHHHHHHHHHHhhccCCCCCceeehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECC--CCCEEEE
Confidence 3333444555544433 444433 666667999999999999841 1235677776643 4568999
Q ss_pred EECCCCCCHHHHHhh-hhccccccc----------cCCCccCcccccccccccccCCEEEEEeeeCCCCCcee
Q 045475 175 EDNGGGMTPDKMRQC-MSLGYSAKS----------KLANTIGQYGNGFKTSTMRLGADVIVFSRCQGTDGKCS 236 (662)
Q Consensus 175 ~DNG~GM~~eel~~~-~~~G~S~K~----------~~~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g~~G~~~ 236 (662)
.|||.||+.+++.+. ..+|+|... .....|||||+||.+|.| .+.+|.|.||+.+..+..|
T Consensus 140 ~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFm-VAdkV~V~Trs~~~~~~~W 211 (814)
T PTZ00130 140 TDTGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFL-VADKVIVYTKNNNDEQYIW 211 (814)
T ss_pred EECCCCCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhheee-ecCEEEEEEcCCCCceEEE
Confidence 999999999999775 458887532 123579999999977665 9999999999876444333
No 7
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1e-12 Score=148.64 Aligned_cols=112 Identities=29% Similarity=0.397 Sum_probs=83.7
Q ss_pred chhHHHHHHHHhccchhhhhc-------------CCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhh-cccccc
Q 045475 132 HKWALGAFAELLDNSLDEVCN-------------GATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMS-LGYSAK 197 (662)
Q Consensus 132 h~~pf~AIaELVDNAiDA~~a-------------gAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~-~G~S~K 197 (662)
|+..--.|.|||.||.||+.. +...+.|.|..++ .+..|+|.|||.||+.+++...+. ++.|.+
T Consensus 25 YSnKeIFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk--~~kTLtI~DNGIGMT~~Ev~~~LgTIAkSgT 102 (623)
T COG0326 25 YSNKEIFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDK--DNKTLTISDNGIGMTKDEVIENLGTIAKSGT 102 (623)
T ss_pred cCCcHHHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcc--cCCEEEEEeCCCCCCHHHHHHHHHHhhhccH
Confidence 555656899999999999842 1125777777654 568999999999999999998765 777765
Q ss_pred c----------cCCCccCcccccccccccccCCEEEEEeeeCCCC-Cceeeeeeccceeee
Q 045475 198 S----------KLANTIGQYGNGFKTSTMRLGADVIVFSRCQGTD-GKCSTQSIGMLSYTF 247 (662)
Q Consensus 198 ~----------~~~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g~~-G~~~t~siglLS~Tf 247 (662)
. ++..-|||||+||.+|.| .+++|+|.||+.|.. ...| .|-|--.||.
T Consensus 103 ~~F~~~l~~~~~~~~lIGQFGVGFYSaFm-VAdkV~V~T~~~~~~~~~~W-~S~g~g~ytv 161 (623)
T COG0326 103 KEFLESLSEDQKDSDLIGQFGVGFYSAFM-VADKVTVITRSAGEDEAYHW-ESDGEGEYTV 161 (623)
T ss_pred HHHHHHhccccccccccccccchhhheee-eeeeEEEEeccCCCCcceEE-EEcCCCceEE
Confidence 3 123459999999998887 999999999998864 3344 2344444443
No 8
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=99.42 E-value=8.5e-12 Score=144.54 Aligned_cols=104 Identities=23% Similarity=0.297 Sum_probs=77.5
Q ss_pred chhHHHHHHHHhccchhhhhc-------------CCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhh-hcccccc
Q 045475 132 HKWALGAFAELLDNSLDEVCN-------------GATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCM-SLGYSAK 197 (662)
Q Consensus 132 h~~pf~AIaELVDNAiDA~~a-------------gAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~-~~G~S~K 197 (662)
|+.+...|+|||.||.||+.. ....+.|.+..+. ....|.|.|||.||+.+++.+.+ .+|+|..
T Consensus 23 Ys~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~--~~~~L~I~DnGiGMt~edl~~~LgtIa~SGt 100 (701)
T PTZ00272 23 YSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDK--ENKTLTVEDNGIGMTKADLVNNLGTIARSGT 100 (701)
T ss_pred cCCccHhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcC--CCCEEEEEECCCCCCHHHHHHHhhhhhhcch
Confidence 555556899999999999732 1235677776653 35689999999999999997755 4787643
Q ss_pred c---------cCCCccCcccccccccccccCCEEEEEeeeCCCCCceeee
Q 045475 198 S---------KLANTIGQYGNGFKTSTMRLGADVIVFSRCQGTDGKCSTQ 238 (662)
Q Consensus 198 ~---------~~~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g~~G~~~t~ 238 (662)
. .+...||+||+||.++.| .+..|.|.||+.+..+..|.-
T Consensus 101 ~~f~~~~~~~~~~~~iGqFGvGfyS~Fm-vad~V~V~Srs~~~~~~~W~s 149 (701)
T PTZ00272 101 KAFMEALEAGGDMSMIGQFGVGFYSAYL-VADRVTVTSKNNSDESYVWES 149 (701)
T ss_pred HHHHHHhhccCCccccCCCCcceEEEEE-eccEEEEEEecCCCceEEEEE
Confidence 2 123579999999976655 999999999987655555543
No 9
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=99.35 E-value=2.4e-12 Score=148.28 Aligned_cols=165 Identities=18% Similarity=0.286 Sum_probs=123.2
Q ss_pred eeChhhhhhhhcc--chhHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccc
Q 045475 119 RVHPKFLHSNATS--HKWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSA 196 (662)
Q Consensus 119 ~~~p~fL~s~sts--h~~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~ 196 (662)
.+++...+.++.. -..|.+|+.|||+||+|| ||+.|.|.+.. +|...|.|.|||+||+++++.-++....++
T Consensus 6 ~L~~~l~nqIAAGEVIerPaSVVKELVENSlDA---GAt~I~I~ve~---gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTS 79 (638)
T COG0323 6 QLPPDLVNQIAAGEVIERPASVVKELVENSLDA---GATRIDIEVEG---GGLKLIRVRDNGSGIDKEDLPLALLRHATS 79 (638)
T ss_pred eCCHHHHHHhcccceeecHHHHHHHHHhccccc---CCCEEEEEEcc---CCccEEEEEECCCCCCHHHHHHHHhhhccc
Confidence 3456666666644 589999999999999994 99999998864 677889999999999999999988877777
Q ss_pred cccC------CCccCcccccccccccccCCEEEEEeeeCCC-CCceeeeeeccceee-eecC-CCCcceEEecccccccc
Q 045475 197 KSKL------ANTIGQYGNGFKTSTMRLGADVIVFSRCQGT-DGKCSTQSIGMLSYT-FLRG-TGKEDIVVPMVDYEKRG 267 (662)
Q Consensus 197 K~~~------~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g~-~G~~~t~siglLS~T-fl~~-~~~~dI~VPil~~~~~~ 267 (662)
|... -.++|.-|-.| +|++-.++++|.||+.+. .|++.....|.+.-+ --.. ..++.|.|-.++|+++.
T Consensus 80 KI~~~~DL~~I~TlGFRGEAL--~SIasVsrlti~Srt~~~~~~~~~~~~g~~~~~~~~p~a~~~GTtVeV~dLF~NtPa 157 (638)
T COG0323 80 KIASLEDLFRIRTLGFRGEAL--ASIASVSRLTITSRTAEASEGTQIYAEGGGMEVTVKPAAHPVGTTVEVRDLFYNTPA 157 (638)
T ss_pred cCCchhHHHHhhccCccHHHH--HHHHhhheeEEEeecCCcCceEEEEecCCcccccccCCCCCCCCEEEehHhhccChH
Confidence 7532 24667777776 667788999999997664 377777777755421 1112 23789999999999886
Q ss_pred ccccccccCCchhhhhhhhhhhhcCC
Q 045475 268 EHWDMLVRSSPEDWSRNLETVVQWSP 293 (662)
Q Consensus 268 ~~~~~~~~~~~~dw~~~l~~Il~ySp 293 (662)
+. +...+...++....++|.+|+.
T Consensus 158 Rr--Kflks~~~E~~~i~~vv~r~AL 181 (638)
T COG0323 158 RR--KFLKSEKTEFGHITELINRYAL 181 (638)
T ss_pred HH--HhhcccHHHHHHHHHHHHHHHh
Confidence 54 2344555667777777777764
No 10
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.24 E-value=4.9e-11 Score=137.30 Aligned_cols=143 Identities=18% Similarity=0.255 Sum_probs=105.9
Q ss_pred eeChhhhhhhhcc--chhHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccc
Q 045475 119 RVHPKFLHSNATS--HKWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSA 196 (662)
Q Consensus 119 ~~~p~fL~s~sts--h~~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~ 196 (662)
.+++...+.++.. -..|.++|.||||||+| |||+.|.|.+.. +|...|.|.|||.||+.+++..++..+.++
T Consensus 5 ~L~~~v~~~IaAgevI~~~~svvkElveNsiD---Agat~I~v~i~~---~g~~~i~V~DnG~Gi~~~~~~~~~~~~~ts 78 (617)
T PRK00095 5 LLPPQLANQIAAGEVVERPASVVKELVENALD---AGATRIDIEIEE---GGLKLIRVRDNGCGISKEDLALALARHATS 78 (617)
T ss_pred ECCHHHHHHhcCcCcccCHHHHHHHHHHHHHh---CCCCEEEEEEEe---CCeEEEEEEEcCCCCCHHHHHHHhhccCCC
Confidence 4566667777655 48888999999999999 489999999963 467789999999999999999999877777
Q ss_pred cccC------CCccCcccccccccccccCCEEEEEeeeCCCC-Cceeeeeeccce-eeeecCCCCcceEEeccccccccc
Q 045475 197 KSKL------ANTIGQYGNGFKTSTMRLGADVIVFSRCQGTD-GKCSTQSIGMLS-YTFLRGTGKEDIVVPMVDYEKRGE 268 (662)
Q Consensus 197 K~~~------~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g~~-G~~~t~siglLS-~Tfl~~~~~~dI~VPil~~~~~~~ 268 (662)
|... ..+.|..|.||.+ +...+.++|.|++.+.. |.+.+..-|.+. .+-.....++.|.|-.++|+.+.+
T Consensus 79 Ki~~~~dl~~~~t~GfrGeAL~s--I~~vs~l~i~s~~~~~~~~~~~~~~~G~~~~~~~~~~~~GT~V~v~~LF~n~P~R 156 (617)
T PRK00095 79 KIASLDDLEAIRTLGFRGEALPS--IASVSRLTLTSRTADAAEGWQIVYEGGEIVEVKPAAHPVGTTIEVRDLFFNTPAR 156 (617)
T ss_pred CCCChhHhhccccCCcchhHHHh--hhhceEEEEEEecCCCCceEEEEecCCcCcceecccCCCCCEEEechhhccCcHH
Confidence 7532 2567999999843 33446899999987543 666665656432 211112346788888888887654
Q ss_pred c
Q 045475 269 H 269 (662)
Q Consensus 269 ~ 269 (662)
.
T Consensus 157 r 157 (617)
T PRK00095 157 R 157 (617)
T ss_pred H
Confidence 3
No 11
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.23 E-value=8.5e-11 Score=124.58 Aligned_cols=142 Identities=18% Similarity=0.260 Sum_probs=98.1
Q ss_pred eeChhhhhhhhcc--chhHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccc
Q 045475 119 RVHPKFLHSNATS--HKWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSA 196 (662)
Q Consensus 119 ~~~p~fL~s~sts--h~~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~ 196 (662)
++++...+.++.. -..+..||.|||+||+|| +|+.|.|.+.. ++...|.|.|||.||+++++..++..++++
T Consensus 5 ~l~~~~~~~i~s~~~i~~~~~~l~eLi~Na~dA---~a~~I~i~~~~---~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ts 78 (312)
T TIGR00585 5 PLPPELVNKIAAGEVIERPASVVKELVENSLDA---GATRIDVEIEE---GGLKLIEVSDNGSGIDKEDLPLACERHATS 78 (312)
T ss_pred ECCHHHHHHHhCcCchhhHHHHHHHHHHHHHHC---CCCEEEEEEEe---CCEEEEEEEecCCCCCHHHHHHHhhCCCcC
Confidence 4566777777654 477779999999999995 88999888864 345569999999999999999998877777
Q ss_pred cccC------CCccCcccccccccccccCCEEEEEeee-CCCC-Cceeeeeeccce-eeeecCCCCcceEEecccccccc
Q 045475 197 KSKL------ANTIGQYGNGFKTSTMRLGADVIVFSRC-QGTD-GKCSTQSIGMLS-YTFLRGTGKEDIVVPMVDYEKRG 267 (662)
Q Consensus 197 K~~~------~~~IG~fG~GlKsAs~rlg~~v~V~Sk~-~g~~-G~~~t~siglLS-~Tfl~~~~~~dI~VPil~~~~~~ 267 (662)
|... ..++|+.|.||. +++..+.++|.|++ .+.. +.++....+.+. ..-.....++.|.|--++++.+.
T Consensus 79 k~~~~~~~~~~~~~G~rG~al~--si~~~s~~~i~S~~~~~~~~~~~~~~~g~~~~~~~~~~~~~GTtV~v~~lf~n~p~ 156 (312)
T TIGR00585 79 KIQSFEDLERIETLGFRGEALA--SISSVSRLTITTKTSAADGLAWQALLEGGMIEEIKPAPRPVGTTVEVRDLFYNLPV 156 (312)
T ss_pred CCCChhHhhcccccCccchHHH--HHHhhCcEEEEEeecCCCcceEEEEECCCcCcccccccCCCccEEEEchhhccCch
Confidence 6532 246799999884 44455689999997 3332 433332222111 11111234677888888887654
Q ss_pred c
Q 045475 268 E 268 (662)
Q Consensus 268 ~ 268 (662)
+
T Consensus 157 r 157 (312)
T TIGR00585 157 R 157 (312)
T ss_pred h
Confidence 3
No 12
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a CW-type zinc finger motif, named for its conserved cysteine and tryptophan residues. It is predicted to be a highly specialised mononuclear four-cysteine (C4) zinc finger that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including chromatin methylation status and early embryonic development. Weak homology to members of IPR001965 from INTERPRO further evidences these predictions. The domain is found exclusively in vertebrates, vertebrate-infecting parasites and higher plants []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2RR4_A 2E61_A 2L7P_A.
Probab=99.11 E-value=3.4e-11 Score=95.54 Aligned_cols=48 Identities=10% Similarity=0.079 Sum_probs=34.6
Q ss_pred eeeecCcccccccccccccchhhhhcccccccccccCCCccccccCCCCCC
Q 045475 542 QILKGGECSSFKMEYISEFDKRLQEESASEDRSCHEASPAIDESQRGPGSH 592 (662)
Q Consensus 542 ~~vq~~~c~~w~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~ 592 (662)
.|||||.|+||| ++|.......+.+|+.|+|+||++....||..||+.
T Consensus 2 ~WVQCd~C~KWR---~lp~~~~~~~~~~~d~W~C~~n~~~~~~sC~~pee~ 49 (50)
T PF07496_consen 2 YWVQCDSCLKWR---RLPEEVDPIREELPDPWYCSMNPDPPFNSCDAPEEI 49 (50)
T ss_dssp EEEE-TTT--EE---EE-CCHHCTSCCSSTT--GGGSS-CCC-STTS--SS
T ss_pred eEEECCCCCcee---eCChhhCcccccCCCeEEcCCCCCCCCCCCCCcccC
Confidence 699999999999 899887777789999999999999999999999874
No 13
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=99.07 E-value=2.9e-10 Score=126.60 Aligned_cols=170 Identities=19% Similarity=0.240 Sum_probs=124.7
Q ss_pred eeChhhhhhhhcc--chhHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhh-hhcccc
Q 045475 119 RVHPKFLHSNATS--HKWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQC-MSLGYS 195 (662)
Q Consensus 119 ~~~p~fL~s~sts--h~~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~-~~~G~S 195 (662)
+++-..++.+|.. ...|..||.|||+||+|| +++.|.|.+.. +|-..|.|.|||.||..+++.-. =+|.+|
T Consensus 10 rLde~VVNRIAAGEVI~RP~NAlKEliENSLDA---~ST~I~V~vk~---GGLKLlQisDnG~GI~reDl~ilCeRftTS 83 (694)
T KOG1979|consen 10 RLDEDVVNRIAAGEVIQRPVNALKELIENSLDA---NSTSIDVLVKD---GGLKLLQISDNGSGIRREDLPILCERFTTS 83 (694)
T ss_pred cCcHHHHhHhhccchhhchHHHHHHHHhccccC---CCceEEEEEec---CCeEEEEEecCCCccchhhhHHHHHHhhhh
Confidence 4455666666644 588999999999999995 89988887764 67888999999999999999864 456555
Q ss_pred cccc--CCCccCcccc-cccccccccCCEEEEEeeeCCCC-CceeeeeeccceeeeecCC--CCcceEEecccccccccc
Q 045475 196 AKSK--LANTIGQYGN-GFKTSTMRLGADVIVFSRCQGTD-GKCSTQSIGMLSYTFLRGT--GKEDIVVPMVDYEKRGEH 269 (662)
Q Consensus 196 ~K~~--~~~~IG~fG~-GlKsAs~rlg~~v~V~Sk~~g~~-G~~~t~siglLS~Tfl~~~--~~~dI~VPil~~~~~~~~ 269 (662)
.-.+ +-..|.-||. |=..|+++..++++|.||+++.. |.+.++.-|.+-.+--... .++.|.|..++|+...++
T Consensus 84 KL~kFEDL~~lsTyGFRGEALASiShVA~VtV~TK~~~~~cayrasY~DGkm~~~pKpcAgk~GT~I~vedLFYN~~~Rr 163 (694)
T KOG1979|consen 84 KLTKFEDLFSLSTYGFRGEALASISHVAHVTVTTKTAEGKCAYRASYRDGKMIATPKPCAGKQGTIITVEDLFYNMPTRR 163 (694)
T ss_pred hcchhHHHHhhhhcCccHHHHhhhhheeEEEEEEeecCceeeeEEEeeccccccCCCCccCCCceEEEehHhhccCHHHH
Confidence 4221 2233444554 44568999999999999988764 8888888886543322222 356788999999987654
Q ss_pred ccccccCCchhhhhhhhhhhhcCCCCC
Q 045475 270 WDMLVRSSPEDWSRNLETVVQWSPYTS 296 (662)
Q Consensus 270 ~~~~~~~~~~dw~~~l~~Il~ySpf~s 296 (662)
..+++..+++..-+.++.+|+-+..
T Consensus 164 --kal~~~~EE~~ki~dlv~ryAIHn~ 188 (694)
T KOG1979|consen 164 --KALRNHAEEYRKIMDLVGRYAIHNP 188 (694)
T ss_pred --HHhcCcHHHHHHHHHHHHHHheeCC
Confidence 2345567888888888888987654
No 14
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.04 E-value=7.7e-10 Score=120.92 Aligned_cols=95 Identities=26% Similarity=0.400 Sum_probs=77.9
Q ss_pred HHHHHHHhccchhhhh-cC-CceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhh-ccccccc-cCCCccCcccccc
Q 045475 136 LGAFAELLDNSLDEVC-NG-ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMS-LGYSAKS-KLANTIGQYGNGF 211 (662)
Q Consensus 136 f~AIaELVDNAiDA~~-ag-At~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~-~G~S~K~-~~~~~IG~fG~Gl 211 (662)
.++|.|||+||+||+. +| -..|.|.|.... .+...+.|+|||.||+++.+.++|. +-+++|- ...++.||+|+|.
T Consensus 38 ~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~-~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~QsRGqqGiGi 116 (538)
T COG1389 38 TTTVHELVTNSLDACEEAGILPDIKVEIERIG-KDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQSRGQQGIGI 116 (538)
T ss_pred HHHHHHHHhcchhhHHhcCCCCceEEEEEecC-CceEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhhccccccccH
Confidence 3899999999999984 34 366777776543 3567899999999999999999986 6666665 6678999999998
Q ss_pred cccc----cccCCEEEEEeeeCCC
Q 045475 212 KTST----MRLGADVIVFSRCQGT 231 (662)
Q Consensus 212 KsAs----~rlg~~v~V~Sk~~g~ 231 (662)
+.|. |..|+.+.|.|.+.++
T Consensus 117 s~avLysQmTtGkPv~V~s~T~~s 140 (538)
T COG1389 117 SAAVLYSQMTTGKPVRVISSTGDS 140 (538)
T ss_pred HHHHHHHHhcCCCceEEEecCCCC
Confidence 7655 7889999999998764
No 15
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=98.59 E-value=8.7e-08 Score=107.40 Aligned_cols=91 Identities=25% Similarity=0.396 Sum_probs=74.8
Q ss_pred cchhHHHHHHHHhccchhhhhcC--CceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCccc
Q 045475 131 SHKWALGAFAELLDNSLDEVCNG--ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYG 208 (662)
Q Consensus 131 sh~~pf~AIaELVDNAiDA~~ag--At~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG 208 (662)
.|.+. +.+++|||||+||+.+. .+.|.+.+.. .++...|+|.|||+||+++....+|..|+|+|.. +..|
T Consensus 425 ~~~li-tIlGNLidNA~eA~~~~~~~k~I~l~i~~--~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk~~-----~~rG 496 (537)
T COG3290 425 PHDLV-TILGNLIDNALEALLAPEENKEIELSLSD--RGDELVIEVADTGPGIPPEVRDKIFEKGVSTKNT-----GGRG 496 (537)
T ss_pred hHHHH-HHHHHHHHHHHHHhhccCCCcEEEEEEEe--cCCEEEEEEeCCCCCCChHHHHHHHhcCccccCC-----CCCc
Confidence 36777 99999999999998643 3567666665 3577899999999999999999999999999852 3448
Q ss_pred ccc---cccccccCCEEEEEeeeC
Q 045475 209 NGF---KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 209 ~Gl---KsAs~rlg~~v~V~Sk~~ 229 (662)
+|| |...-++|+.+.|.+...
T Consensus 497 iGL~Lvkq~V~~~~G~I~~~s~~~ 520 (537)
T COG3290 497 IGLYLVKQLVERLGGSIEVESEKG 520 (537)
T ss_pred hhHHHHHHHHHHcCceEEEeeCCC
Confidence 997 677889999999999743
No 16
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=98.57 E-value=2.8e-07 Score=107.24 Aligned_cols=97 Identities=27% Similarity=0.405 Sum_probs=71.8
Q ss_pred hhHHHHHHHHhccchhhhhcCC--ceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhh-ccccccccC-CCccCccc
Q 045475 133 KWALGAFAELLDNSLDEVCNGA--TYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMS-LGYSAKSKL-ANTIGQYG 208 (662)
Q Consensus 133 ~~pf~AIaELVDNAiDA~~agA--t~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~-~G~S~K~~~-~~~IG~fG 208 (662)
.+...+|.|||+||+||...+. ..|.|.+... +....|.|.|||.||+++++.++|. |.+++|... ..+.|+.|
T Consensus 45 r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~~--g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG~rG 122 (795)
T PRK14868 45 RGLVTAVKEAVDNALDATEEAGILPDIYVEIEEV--GDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQG 122 (795)
T ss_pred HHHHHHHHHHHHHHHHhCcccCCCceEEEEEEEC--CCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCCCCc
Confidence 3455899999999999742222 1577777542 3346899999999999999999996 666665332 25679999
Q ss_pred ccccccc----cccCCEEEEEeeeCCC
Q 045475 209 NGFKTST----MRLGADVIVFSRCQGT 231 (662)
Q Consensus 209 ~GlKsAs----~rlg~~v~V~Sk~~g~ 231 (662)
+||.++. +..|+.+.|.|+..+.
T Consensus 123 ~GLglai~~sqlt~GgpI~I~S~~~~~ 149 (795)
T PRK14868 123 IGISAAVLYSQLTSGKPAKITSRTQGS 149 (795)
T ss_pred eehHHHHHHHHHcCCCcEEEEeCCCCC
Confidence 9986544 3458889999998664
No 17
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=98.55 E-value=1.6e-07 Score=107.19 Aligned_cols=139 Identities=20% Similarity=0.278 Sum_probs=89.5
Q ss_pred eChhhhhhhhccc--hhHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhcccccc
Q 045475 120 VHPKFLHSNATSH--KWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAK 197 (662)
Q Consensus 120 ~~p~fL~s~stsh--~~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K 197 (662)
+.++-.|.+.++. ..+.+|+.||||||+| |||+.|.|.+.. .|...|+|.|||+|+++.+..-+-.-.+++|
T Consensus 4 i~~~tvhrI~S~qvI~sl~sAVKELvENSiD---AGAT~I~I~~kd---yG~d~IEV~DNG~GI~~~n~~~l~lkh~TSK 77 (672)
T KOG1978|consen 4 IPKDTVHRICSSQVITSLVSAVKELVENSID---AGATAIDIKVKD---YGSDSIEVSDNGSGISATDFEGLALKHTTSK 77 (672)
T ss_pred CChhhhhccccCCeeccHHHHHHHHHhcCcc---cCCceeeEecCC---CCcceEEEecCCCCCCccchhhhhhhhhhhc
Confidence 4555666665553 4444999999999999 499999888864 3778999999999999999876432334444
Q ss_pred cc------CCCccCcccccccccccccCCEEEEEeeeCCCC-Cceeeeee-c-cceeeeecCCCCcceEEeccccccc
Q 045475 198 SK------LANTIGQYGNGFKTSTMRLGADVIVFSRCQGTD-GKCSTQSI-G-MLSYTFLRGTGKEDIVVPMVDYEKR 266 (662)
Q Consensus 198 ~~------~~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g~~-G~~~t~si-g-lLS~Tfl~~~~~~dI~VPil~~~~~ 266 (662)
.. ...+.|..|-.| +++.--++++|.|++.... |.++.+-. | .++.+-......+.|+|--++=..+
T Consensus 78 i~~f~Dl~~l~T~GFRGEAL--SsLCa~~dv~I~Trt~~~~vgt~l~~Dh~G~I~~k~~~ar~~GTTV~v~~LF~tLP 153 (672)
T KOG1978|consen 78 IVSFADLAVLFTLGFRGEAL--SSLCALGDVMISTRSHSAKVGTRLVYDHDGHIIQKKPVARGRGTTVMVRQLFSTLP 153 (672)
T ss_pred ccchhhhhhhhhhhhHHHHH--HhhhhccceEEEEeeccCccceeEEEccCCceeeeccccCCCCCEEEHhhhcccCC
Confidence 32 225677777777 4455556788888876332 65554422 3 3222222223356676666654444
No 18
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=1.3e-07 Score=106.48 Aligned_cols=109 Identities=25% Similarity=0.384 Sum_probs=81.2
Q ss_pred HHHHHHhccchhhhh--------c---CCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhh-ccccccc------
Q 045475 137 GAFAELLDNSLDEVC--------N---GATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMS-LGYSAKS------ 198 (662)
Q Consensus 137 ~AIaELVDNAiDA~~--------a---gAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~-~G~S~K~------ 198 (662)
--+.|||-||-||.. . ..+...|.|..++ ....|+|.|.|.||+.++|.+.+. +..|...
T Consensus 60 vFlRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~~nk--~~~tlti~DtGIGMTk~dLvnnLGTIAkSGtK~Fmeal 137 (656)
T KOG0019|consen 60 VFLRELISNASDALEKLRYLELKGDEKALPELEIRIITNK--DKRTITIQDTGIGMTKEDLVNNLGTIAKSGSKAFLEAL 137 (656)
T ss_pred HHHHhhhccccchHHHHHHHhhcCccccccceeEEeccCC--CcceEEEEecCCCcCHHHHHhhhhhhhhcccHHHHHHH
Confidence 368999999999873 0 1346777777664 567899999999999999998875 5555432
Q ss_pred ----cCCCccCcccccccccccccCCEEEEEeeeCCCCCceeeeeeccceeeeec
Q 045475 199 ----KLANTIGQYGNGFKTSTMRLGADVIVFSRCQGTDGKCSTQSIGMLSYTFLR 249 (662)
Q Consensus 199 ----~~~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g~~G~~~t~siglLS~Tfl~ 249 (662)
.+...|||||+||.+|.+ .+.+|.|+||....++-.|+-+.+ -|++.-.
T Consensus 138 kea~ad~~~IGQFGvGFYSayl-VAdkV~V~tk~~~~e~y~Wes~~~-gs~~v~~ 190 (656)
T KOG0019|consen 138 KEAEAESNLIGQFGVGFYSAFM-VADRVVVTTRHPADEGLQWTSNGR-GSYEIAE 190 (656)
T ss_pred Hhcccchhhhhhcccchhhhhh-hhheeEEeeccCCCcceeeecCCC-CceEEee
Confidence 233579999999998877 899999999998876655644433 3454433
No 19
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.51 E-value=3.7e-07 Score=81.08 Aligned_cols=92 Identities=21% Similarity=0.371 Sum_probs=70.9
Q ss_pred HHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCccccccc--
Q 045475 135 ALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGFK-- 212 (662)
Q Consensus 135 pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~GlK-- 212 (662)
...+|.||++||+++...+ ..|.|.+... ++...|.|.|||.||+++++..++..+++.+. .....+.+|+||.
T Consensus 6 l~~il~~ll~Na~~~~~~~-~~I~i~~~~~--~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~-~~~~~~g~GlGL~~~ 81 (111)
T PF02518_consen 6 LRQILSELLDNAIKHSPEG-GKIDITIEED--DDHLSIEISDNGVGIPPEELEKLFEPFFTSDK-SETSISGHGLGLYIV 81 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHT-SEEEEEEEEE--TTEEEEEEEESSSSTTHHHHHHHCSTTSHSSS-SSGGSSSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCC-CEEEEEEEEe--cCeEEEEEEeccccccccccccchhhcccccc-cccccCCCChHHHHH
Confidence 3478999999999985433 6788888764 36789999999999999999999987776653 3345667999983
Q ss_pred -ccccccCCEEEEEeeeCC
Q 045475 213 -TSTMRLGADVIVFSRCQG 230 (662)
Q Consensus 213 -sAs~rlg~~v~V~Sk~~g 230 (662)
..+-.++.++.+.+...+
T Consensus 82 ~~~~~~~~g~l~~~~~~~~ 100 (111)
T PF02518_consen 82 KQIAERHGGELTIESSEGG 100 (111)
T ss_dssp HHHHHHTTEEEEEEEETTT
T ss_pred HHHHHHCCCEEEEEEcCCC
Confidence 444568888888887543
No 20
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=98.45 E-value=5.3e-07 Score=101.30 Aligned_cols=99 Identities=25% Similarity=0.328 Sum_probs=71.5
Q ss_pred chhHHHHHHHHhccchhhhhcCC--ceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhh-cccccccc-CCCccCcc
Q 045475 132 HKWALGAFAELLDNSLDEVCNGA--TYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMS-LGYSAKSK-LANTIGQY 207 (662)
Q Consensus 132 h~~pf~AIaELVDNAiDA~~agA--t~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~-~G~S~K~~-~~~~IG~f 207 (662)
......++.|||+||+||..... ..|.|.+.... .+...|.|.|||.||+++++..+|. |.+++|.. .....|.+
T Consensus 26 ~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~g-~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~G~~ 104 (488)
T TIGR01052 26 IRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKIG-KDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSRGQQ 104 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECC-CceEEEEEEECCCCCCHHHHHhhhhhccccCccccccccCCCc
Confidence 34555899999999999853221 26777776421 1235799999999999999999987 56666643 44567999
Q ss_pred cccccccc----cccCCEEEEEeeeCCC
Q 045475 208 GNGFKTST----MRLGADVIVFSRCQGT 231 (662)
Q Consensus 208 G~GlKsAs----~rlg~~v~V~Sk~~g~ 231 (662)
|+|+..+. +..|..+.|.|+..+.
T Consensus 105 GlGLs~~~~isq~~~G~~i~V~S~~~g~ 132 (488)
T TIGR01052 105 GIGISGAVLYSQMTTGKPVKVISSTGGE 132 (488)
T ss_pred cEehhHHHHHHHHcCCceEEEEEecCCc
Confidence 99995433 3345569999998754
No 21
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=98.42 E-value=6.1e-07 Score=101.80 Aligned_cols=97 Identities=28% Similarity=0.435 Sum_probs=69.7
Q ss_pred HHHHHHHHhccchhhhhcCC--ceEEEEEEecC-CCCeeEEEEEECCCCCCHHHHHhhhh-ccccccccC-CCccCcccc
Q 045475 135 ALGAFAELLDNSLDEVCNGA--TYVQVDLLKNK-TDGTHMLLVEDNGGGMTPDKMRQCMS-LGYSAKSKL-ANTIGQYGN 209 (662)
Q Consensus 135 pf~AIaELVDNAiDA~~agA--t~V~I~i~~~~-~~g~~~L~I~DNG~GM~~eel~~~~~-~G~S~K~~~-~~~IG~fG~ 209 (662)
...+|.|||+||+||...+. ..|.|.+.... .++...|.|.|||.||+++++..+|. +.+++|... ....|.+|+
T Consensus 37 L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~~GL 116 (535)
T PRK04184 37 LYTTVKELVDNSLDACEEAGILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQQGI 116 (535)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCCCCc
Confidence 35899999999999853221 35777776421 13457899999999999999999986 555555333 456799999
Q ss_pred cccccc----cccCCEEEEEeeeCCC
Q 045475 210 GFKTST----MRLGADVIVFSRCQGT 231 (662)
Q Consensus 210 GlKsAs----~rlg~~v~V~Sk~~g~ 231 (662)
||..+. +..|..+.|.|+..+.
T Consensus 117 GLsiv~~isq~~~G~~I~V~S~~~~g 142 (535)
T PRK04184 117 GISAAVLYAQMTTGKPVRVISSTGGS 142 (535)
T ss_pred chHHHHHHHHHhcCCcEEEEEecCCC
Confidence 996543 3346679999987653
No 22
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=98.37 E-value=3.7e-07 Score=105.85 Aligned_cols=111 Identities=23% Similarity=0.297 Sum_probs=81.5
Q ss_pred ccceeeeeChhhhhhhhccchhHHHHHHHHhccchhhhhcC-CceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHh---
Q 045475 113 VGMDHLRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQ--- 188 (662)
Q Consensus 113 ~~~~~~~~~p~fL~s~stsh~~pf~AIaELVDNAiDA~~ag-At~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~--- 188 (662)
.++.||+.-|..-- -++...-+...|.||||||+|+..++ |+.|.|.+..+ ..|+|.|||.||+.+....
T Consensus 17 ~~lE~VrkRP~mYi-Gs~~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~d-----g~I~V~DnGrGIP~~~~~~~~~ 90 (631)
T PRK05559 17 EGLEPVRKRPGMYI-GSTDTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLHAD-----GSVSVRDNGRGIPVGIHPEEGK 90 (631)
T ss_pred cchHHHhcCCCcee-CCCCCchhhhhhhhhhccccchhhcCCCCEEEEEEeCC-----CcEEEEEcCCCCCcccccccCC
Confidence 45677776665321 12224556689999999999987775 89999998742 3799999999999998877
Q ss_pred -----hhh-ccccccccC---CCccCcccccccccccccCCEEEEEeeeCC
Q 045475 189 -----CMS-LGYSAKSKL---ANTIGQYGNGFKTSTMRLGADVIVFSRCQG 230 (662)
Q Consensus 189 -----~~~-~G~S~K~~~---~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g 230 (662)
+|. +..++|-.+ ..+.|+.|+|++ ++-.+...++|.|++.+
T Consensus 91 ~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls-~vNalS~~l~V~s~r~g 140 (631)
T PRK05559 91 SGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVS-VVNALSSRLEVEVKRDG 140 (631)
T ss_pred cchheeeeeccccCccCCccccccCcccccchh-hhhhheeeEEEEEEeCC
Confidence 665 355555322 257899999985 45568889999999765
No 23
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=5e-07 Score=99.63 Aligned_cols=91 Identities=24% Similarity=0.443 Sum_probs=68.4
Q ss_pred HHHHHhccchhhhhc-------------CCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhh-ccccccc-----
Q 045475 138 AFAELLDNSLDEVCN-------------GATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMS-LGYSAKS----- 198 (662)
Q Consensus 138 AIaELVDNAiDA~~a-------------gAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~-~G~S~K~----- 198 (662)
-+.|||.||-||... ....+.|.|..++ .+..|.|.|.|.||+.++|.+.+. ++.|...
T Consensus 99 FLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dk--e~klLhi~DtGiGMT~edLi~NLGTIAkSGTs~Fl~K 176 (785)
T KOG0020|consen 99 FLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADK--EKKLLHITDTGIGMTREDLIKNLGTIAKSGTSEFLEK 176 (785)
T ss_pred HHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeech--hhCeeeEecccCCccHHHHHHhhhhhhcccHHHHHHH
Confidence 579999999998631 1235677777654 567899999999999999988764 5544431
Q ss_pred ----c-----CCCccCcccccccccccccCCEEEEEeeeCCC
Q 045475 199 ----K-----LANTIGQYGNGFKTSTMRLGADVIVFSRCQGT 231 (662)
Q Consensus 199 ----~-----~~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g~ 231 (662)
. ....|||||+||.+|.+ .+..+.|.|++++.
T Consensus 177 m~~~~~~~~~~~dlIGQFGVGFYsAfL-VAD~vvVtsKhNdD 217 (785)
T KOG0020|consen 177 MQDSGDSEGLMNDLIGQFGVGFYSAFL-VADRVVVTSKHNDD 217 (785)
T ss_pred hhccccchhhHHHHHHhcchhhhhhhh-hcceEEEEeccCCc
Confidence 0 12469999999987665 88999999998775
No 24
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=98.22 E-value=1.6e-06 Score=100.43 Aligned_cols=108 Identities=26% Similarity=0.286 Sum_probs=78.8
Q ss_pred ccceeeeeChh-hhhhhhccchhHHHHHHHHhccchhhhhc-CCceEEEEEEecCCCCeeEEEEEECCCCCCHHH-----
Q 045475 113 VGMDHLRVHPK-FLHSNATSHKWALGAFAELLDNSLDEVCN-GATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDK----- 185 (662)
Q Consensus 113 ~~~~~~~~~p~-fL~s~stsh~~pf~AIaELVDNAiDA~~a-gAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~ee----- 185 (662)
.|+.+|+--|. |+-+.+ |..+|.||||||+|...| +|+.|.|.|.. + ..|+|.|||.||+.+.
T Consensus 13 ~gle~VRkRPgMYigs~~-----~~~lv~ElvdNsiDE~~ag~a~~I~V~i~~----d-~~I~V~DnGrGIp~~~h~~~g 82 (625)
T TIGR01055 13 DGLEPVRKRPGMYTDTTR-----PNHLVQEVIDNSVDEALAGFASIIMVILHQ----D-QSIEVFDNGRGMPVDIHPKEG 82 (625)
T ss_pred cccHHhhcCCCCeeCCCC-----cceeehhhhhcccchhhcCCCCEEEEEEeC----C-CeEEEEecCCccCcccccccC
Confidence 45556665553 332222 236899999999997777 59999999863 2 5799999999999988
Q ss_pred ---HHhhh-hccccccccC---CCccCcccccccccccccCCEEEEEeeeCCC
Q 045475 186 ---MRQCM-SLGYSAKSKL---ANTIGQYGNGFKTSTMRLGADVIVFSRCQGT 231 (662)
Q Consensus 186 ---l~~~~-~~G~S~K~~~---~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g~ 231 (662)
++-+| .+..++|-.+ ..+.|..|+|++ ++-.+...+.|.|++.+.
T Consensus 83 ~~~~e~v~t~lhagsK~~~~~~~~SgG~~GvGls-~vnalS~~l~v~~~r~g~ 134 (625)
T TIGR01055 83 VSAVEVILTTLHAGGKFSNKNYHFSGGLHGVGIS-VVNALSKRVKIKVYRQGK 134 (625)
T ss_pred CcHHHHhhhcccccCCCCCCcceecCCCcchhHH-HHHHhcCeEEEEEEECCe
Confidence 77777 4555555422 257899999985 455688889999998764
No 25
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=98.12 E-value=6e-06 Score=95.67 Aligned_cols=93 Identities=23% Similarity=0.278 Sum_probs=67.5
Q ss_pred HHHHHHhccchhhhhcCC--ceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhc-cccccccC-CCccCccccccc
Q 045475 137 GAFAELLDNSLDEVCNGA--TYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSL-GYSAKSKL-ANTIGQYGNGFK 212 (662)
Q Consensus 137 ~AIaELVDNAiDA~~agA--t~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~-G~S~K~~~-~~~IG~fG~GlK 212 (662)
+++.|||+||+||..... ..|.|.+.... .+...|.|.|||.||+++++..+|.. -+++|... ..+.|..|+|+.
T Consensus 39 ~VVkELVeNAIDA~~~~g~~p~I~V~I~~~g-~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~rG~GLa 117 (659)
T PRK14867 39 TIIHELVTNSLDACEEAEILPDIKVEIEKLG-SDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQQGIGAA 117 (659)
T ss_pred HHHHHHHHHHHHHhhccCCCceEEEEEEECC-CcEEEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCCCcccHH
Confidence 789999999999853221 36888776531 22356999999999999999999974 44444322 257789999996
Q ss_pred ccc----cccCCEEEEEeeeCC
Q 045475 213 TST----MRLGADVIVFSRCQG 230 (662)
Q Consensus 213 sAs----~rlg~~v~V~Sk~~g 230 (662)
.+. +..|+.+.|.|+..+
T Consensus 118 ~a~~vsql~~G~pI~I~S~~g~ 139 (659)
T PRK14867 118 GVLLFSQITTGKPLKITTSTGD 139 (659)
T ss_pred HHHHHHHHhcCCcEEEEEEcCC
Confidence 544 446888899998743
No 26
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=98.12 E-value=4.6e-06 Score=96.99 Aligned_cols=111 Identities=25% Similarity=0.340 Sum_probs=73.6
Q ss_pred ccceeeeeChh-hhhhhhccchhHHHHHHHHhccchhhhhcC-CceEEEEEEecCCCCeeEEEEEECCCCCCHHHH----
Q 045475 113 VGMDHLRVHPK-FLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKM---- 186 (662)
Q Consensus 113 ~~~~~~~~~p~-fL~s~stsh~~pf~AIaELVDNAiDA~~ag-At~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel---- 186 (662)
.++.|++.-|. |+-+.. ..-....|.||||||+|...+| |+.|.|.+.. +| .|+|.|||.||+.+.-
T Consensus 17 ~~lE~Vr~RPgMYiGs~~--~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~~---~g--~I~V~DnG~GIp~~~h~~~k 89 (638)
T PRK05644 17 EGLEAVRKRPGMYIGSTG--ERGLHHLVYEIVDNSIDEALAGYCDHIEVTINE---DG--SITVTDNGRGIPVDIHPKTG 89 (638)
T ss_pred cchHHHhcCCCceECCCC--hhhHHhhhHHhhhcccccccCCCCCEEEEEEeC---CC--cEEEEEeCccccCCccCCCC
Confidence 34555555554 332221 1222257899999999977678 9999999864 23 7999999999998622
Q ss_pred ----Hhhhh-ccccccccC---CCccCcccccccccccccCCEEEEEeeeCCC
Q 045475 187 ----RQCMS-LGYSAKSKL---ANTIGQYGNGFKTSTMRLGADVIVFSRCQGT 231 (662)
Q Consensus 187 ----~~~~~-~G~S~K~~~---~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g~ 231 (662)
+.+|. +..++|-.+ ..+.|+.|+|+++ +-.+...++|.|++.+.
T Consensus 90 i~~~e~i~~~lhag~kfd~~~yk~s~G~~G~Gls~-vnalS~~~~v~t~r~g~ 141 (638)
T PRK05644 90 KPAVEVVLTVLHAGGKFGGGGYKVSGGLHGVGVSV-VNALSTWLEVEVKRDGK 141 (638)
T ss_pred CCchHHheeeecccCccCCCcccccCCccccchhh-hhheeceEEEEEEeCCc
Confidence 22343 333333221 2378999999954 45588889999997663
No 27
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=97.99 E-value=9.9e-06 Score=94.51 Aligned_cols=89 Identities=28% Similarity=0.333 Sum_probs=64.6
Q ss_pred HHHHHHhccchhhhhcC-CceEEEEEEecCCCCeeEEEEEECCCCCCHHH--------HHhhhh-ccccccccC---CCc
Q 045475 137 GAFAELLDNSLDEVCNG-ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDK--------MRQCMS-LGYSAKSKL---ANT 203 (662)
Q Consensus 137 ~AIaELVDNAiDA~~ag-At~V~I~i~~~~~~g~~~L~I~DNG~GM~~ee--------l~~~~~-~G~S~K~~~---~~~ 203 (662)
.++.||||||+|...|+ |+.|.|.|.. +| .|.|.|||.||+.+. ++.+|. +..++|-.+ ..+
T Consensus 33 ~vv~Elv~NaiDe~~ag~a~~I~V~i~~---~g--~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~l~ag~kf~~~~~k~s 107 (654)
T TIGR01059 33 HLVYEVVDNSIDEAMAGYCDTINVTIND---DG--SVTVEDNGRGIPVDIHPEEGISAVEVVLTVLHAGGKFDKDSYKVS 107 (654)
T ss_pred hhhHHhhhccccccccCCCCEEEEEEeC---CC--cEEEEEeCCCcCccccCcCCCCchHHheeeecccCccCCCcceec
Confidence 68899999999977678 9999999863 23 499999999999862 122333 233333211 257
Q ss_pred cCcccccccccccccCCEEEEEeeeCCC
Q 045475 204 IGQYGNGFKTSTMRLGADVIVFSRCQGT 231 (662)
Q Consensus 204 IG~fG~GlKsAs~rlg~~v~V~Sk~~g~ 231 (662)
.|+.|.|+++ .-.++..++|.|++.+.
T Consensus 108 ~G~~G~gl~~-inalS~~l~v~~~~~g~ 134 (654)
T TIGR01059 108 GGLHGVGVSV-VNALSEWLEVTVFRDGK 134 (654)
T ss_pred CCccchhHHH-HHHhcCeEEEEEEECCe
Confidence 8999999954 45688889999998653
No 28
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=97.97 E-value=6.1e-06 Score=95.24 Aligned_cols=88 Identities=26% Similarity=0.291 Sum_probs=63.4
Q ss_pred HHHHHhccchhhhhcC-CceEEEEEEecCCCCeeEEEEEECCCCCCHHHHH--------hhhh-ccccccccC---CCcc
Q 045475 138 AFAELLDNSLDEVCNG-ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMR--------QCMS-LGYSAKSKL---ANTI 204 (662)
Q Consensus 138 AIaELVDNAiDA~~ag-At~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~--------~~~~-~G~S~K~~~---~~~I 204 (662)
+|.||||||+|+..++ |+.|.|.+.. +| .|+|.|||.||+.+... .+|. +-.++|-.+ ..+.
T Consensus 5 ~v~ElvdNAiD~~~~g~at~I~V~i~~---~g--~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~k~s~ 79 (594)
T smart00433 5 LVDEIVDNAADEALAGYMDTIKVTIDK---DN--SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYKVSG 79 (594)
T ss_pred EEeeehhcccchhccCCCCEEEEEEeC---CC--eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCccccC
Confidence 4689999999987666 9999998864 23 89999999999965432 1233 222233211 2478
Q ss_pred CcccccccccccccCCEEEEEeeeCCC
Q 045475 205 GQYGNGFKTSTMRLGADVIVFSRCQGT 231 (662)
Q Consensus 205 G~fG~GlKsAs~rlg~~v~V~Sk~~g~ 231 (662)
|+.|+|++ ++-.+...++|.|++.+.
T Consensus 80 G~~G~Gls-~vnalS~~l~v~~~~~g~ 105 (594)
T smart00433 80 GLHGVGAS-VVNALSTEFEVEVARDGK 105 (594)
T ss_pred CcccchHH-HHHHhcCceEEEEEeCCc
Confidence 99999985 455688999999998753
No 29
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=97.93 E-value=1.2e-05 Score=94.62 Aligned_cols=111 Identities=23% Similarity=0.302 Sum_probs=74.3
Q ss_pred ccceeeeeChh-hhhhhhccchhHHHHHHHHhccchhhhhcC-CceEEEEEEecCCCCeeEEEEEECCCCCCHH------
Q 045475 113 VGMDHLRVHPK-FLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPD------ 184 (662)
Q Consensus 113 ~~~~~~~~~p~-fL~s~stsh~~pf~AIaELVDNAiDA~~ag-At~V~I~i~~~~~~g~~~L~I~DNG~GM~~e------ 184 (662)
.|+.||+.-|. |+-+.... .-.-..+.||||||+|...|| |+.|.|.|.. + ..|+|.|||.||+.+
T Consensus 16 ~gle~VRkRPgMYIGst~~~-~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~~---d--gsIsV~DnGrGIPvd~h~~~g 89 (756)
T PRK14939 16 KGLDAVRKRPGMYIGDTDDG-TGLHHMVYEVVDNAIDEALAGHCDDITVTIHA---D--GSVSVSDNGRGIPTDIHPEEG 89 (756)
T ss_pred cccHHHhcCCCCeeCCCCCC-cchhhhhhHhhcccccccccCCCCEEEEEEcC---C--CeEEEEEcCCcccCCcccccC
Confidence 45566655553 33333221 111247899999999977778 8999998864 2 279999999999987
Q ss_pred ----HHHhhhhccccccccC---CCccCcccccccccccccCCEEEEEeeeCCC
Q 045475 185 ----KMRQCMSLGYSAKSKL---ANTIGQYGNGFKTSTMRLGADVIVFSRCQGT 231 (662)
Q Consensus 185 ----el~~~~~~G~S~K~~~---~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g~ 231 (662)
++.-. .+..++|-.+ .-+.|..|+|++ ++-.+...+.|.|++.|.
T Consensus 90 ~~~~Elvlt-~lhAggKfd~~~ykvSgGlhGvG~s-vvNAlS~~l~v~v~r~gk 141 (756)
T PRK14939 90 VSAAEVIMT-VLHAGGKFDQNSYKVSGGLHGVGVS-VVNALSEWLELTIRRDGK 141 (756)
T ss_pred Cchhhheee-eecccCCCCCCcccccCCccCccce-EeehccCeEEEEEEeCCe
Confidence 33211 2334444221 236799999985 555688999999997663
No 30
>PRK10604 sensor protein RstB; Provisional
Probab=97.92 E-value=4.1e-05 Score=84.11 Aligned_cols=92 Identities=22% Similarity=0.331 Sum_probs=68.1
Q ss_pred hhHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc-
Q 045475 133 KWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF- 211 (662)
Q Consensus 133 ~~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl- 211 (662)
.....++.+||+||+.+ +...|.|.+... ++...|.|.|||.||+++++.++|...+.........-|-+|+||
T Consensus 318 ~~l~~vl~NLl~NAik~---~~~~I~I~~~~~--~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~~~~~~~g~GLGL~ 392 (433)
T PRK10604 318 RLMERVLDNLLNNALRY---AHSRVRVSLLLD--GNQACLIVEDDGPGIPPEERERVFEPFVRLDPSRDRATGGCGLGLA 392 (433)
T ss_pred HHHHHHHHHHHHHHHHh---CCCeEEEEEEEE--CCEEEEEEEEcCCCCCHHHHhhcCCCCccCCCCCCCCCCCccchHH
Confidence 34557999999999996 346777777654 355789999999999999999999866543221112335679997
Q ss_pred --cccccccCCEEEEEeeeC
Q 045475 212 --KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 212 --KsAs~rlg~~v~V~Sk~~ 229 (662)
|...-.+|+++.|.+...
T Consensus 393 ivk~i~~~~gG~i~v~s~~~ 412 (433)
T PRK10604 393 IVHSIALAMGGSVNCDESEL 412 (433)
T ss_pred HHHHHHHHCCCEEEEEecCC
Confidence 556678999999988743
No 31
>PRK10364 sensor protein ZraS; Provisional
Probab=97.87 E-value=3.5e-05 Score=84.61 Aligned_cols=88 Identities=16% Similarity=0.239 Sum_probs=67.6
Q ss_pred hhHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc-
Q 045475 133 KWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF- 211 (662)
Q Consensus 133 ~~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl- 211 (662)
.....++.+||+||+++.. ....|.|.+..+ ++...|.|.|||.||+++.+.++|..++++|.. -.|+||
T Consensus 347 ~~l~~il~NLl~NA~k~~~-~~~~I~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k~~------g~GlGL~ 417 (457)
T PRK10364 347 DRLTQVLLNLYLNAIQAIG-QHGVISVTASES--GAGVKISVTDSGKGIAADQLEAIFTPYFTTKAE------GTGLGLA 417 (457)
T ss_pred HHHHHHHHHHHHHHHHhcC-CCCeEEEEEEEe--CCeEEEEEEECCCCCCHHHHHHHhCccccCCCC------CCcccHH
Confidence 3455889999999999742 345677777654 345789999999999999999999988887532 248887
Q ss_pred --cccccccCCEEEEEeeeC
Q 045475 212 --KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 212 --KsAs~rlg~~v~V~Sk~~ 229 (662)
|...-.+|+++.|.|...
T Consensus 418 iv~~~v~~~gG~i~i~s~~~ 437 (457)
T PRK10364 418 VVHNIVEQHGGTIQVASQEG 437 (457)
T ss_pred HHHHHHHHCCCEEEEEeCCC
Confidence 455567999999987643
No 32
>PRK09303 adaptive-response sensory kinase; Validated
Probab=97.81 E-value=7.2e-05 Score=81.07 Aligned_cols=91 Identities=14% Similarity=0.167 Sum_probs=66.1
Q ss_pred HHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc---
Q 045475 135 ALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF--- 211 (662)
Q Consensus 135 pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl--- 211 (662)
...+|.+||+||+.+... ...|.|.+.... ++...|.|.|||.||+++++.++|...++.+. ...-+-+|+||
T Consensus 273 l~qvl~NLl~NAik~~~~-~~~I~i~~~~~~-~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~--~~~~~G~GLGL~i~ 348 (380)
T PRK09303 273 IRQVLLNLLDNAIKYTPE-GGTITLSMLHRT-TQKVQVSICDTGPGIPEEEQERIFEDRVRLPR--DEGTEGYGIGLSVC 348 (380)
T ss_pred HHHHHHHHHHHHHhcCCC-CceEEEEEEecC-CCEEEEEEEEcCCCCCHHHHHHHccCceeCCC--CCCCCcccccHHHH
Confidence 447999999999997322 245666654322 34568999999999999999999987665543 12234578887
Q ss_pred cccccccCCEEEEEeeeC
Q 045475 212 KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 212 KsAs~rlg~~v~V~Sk~~ 229 (662)
+...-.+|+.+.|.|...
T Consensus 349 ~~iv~~~gG~i~v~s~~~ 366 (380)
T PRK09303 349 RRIVRVHYGQIWVDSEPG 366 (380)
T ss_pred HHHHHHcCCEEEEEecCC
Confidence 455567999999988754
No 33
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=97.75 E-value=6.6e-05 Score=81.98 Aligned_cols=94 Identities=19% Similarity=0.236 Sum_probs=67.6
Q ss_pred hhHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc-
Q 045475 133 KWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF- 211 (662)
Q Consensus 133 ~~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl- 211 (662)
.....++.+||+||+++.. ....|.|.+..+ ++...|.|.|||.||+++.+.++|...++.+.......|-.|+||
T Consensus 316 ~~l~~vl~NLl~NAik~~~-~~~~I~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~ 392 (430)
T PRK11006 316 DQLRSAISNLVYNAVNHTP-EGTHITVRWQRV--PQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLA 392 (430)
T ss_pred HHHHHHHHHHHHHHHhcCC-CCCeEEEEEEEc--CCEEEEEEEEcCCCCCHHHHHHhccCcccccCCCCCCCCCCchHHH
Confidence 3455899999999999732 234577766543 345789999999999999999999866654322122234568887
Q ss_pred --cccccccCCEEEEEeeeC
Q 045475 212 --KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 212 --KsAs~rlg~~v~V~Sk~~ 229 (662)
|...-.+|+.+.|.|...
T Consensus 393 ivk~iv~~~gG~i~i~s~~~ 412 (430)
T PRK11006 393 IVKHALSHHDSRLEIESEVG 412 (430)
T ss_pred HHHHHHHHCCCEEEEEecCC
Confidence 455667999999988753
No 34
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=97.74 E-value=0.0001 Score=79.45 Aligned_cols=90 Identities=13% Similarity=0.168 Sum_probs=65.1
Q ss_pred HHHHHHHHhccchhhhhcCC---ceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc
Q 045475 135 ALGAFAELLDNSLDEVCNGA---TYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF 211 (662)
Q Consensus 135 pf~AIaELVDNAiDA~~agA---t~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl 211 (662)
.-.++.+|+.||+++...+. ..|.|.... .++...|.|.|||.||+++.+.++|...++.|... .+--|+||
T Consensus 388 l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~--~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~~---~~G~GlGL 462 (494)
T TIGR02938 388 LRSLFKALVDNAIEAMNIKGWKRRELSITTAL--NGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGGS---RKHIGMGL 462 (494)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcceEEEEEEe--cCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCCC---CCCCcccH
Confidence 34689999999999854331 235555443 34567899999999999999999998777665321 22347777
Q ss_pred ---cccccccCCEEEEEeeeC
Q 045475 212 ---KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 212 ---KsAs~rlg~~v~V~Sk~~ 229 (662)
|...-.+|+.+.|.|...
T Consensus 463 ~i~~~iv~~~gG~i~~~s~~~ 483 (494)
T TIGR02938 463 SVAQEIVADHGGIIDLDDDYS 483 (494)
T ss_pred HHHHHHHHHcCCEEEEEECCC
Confidence 555567999999988653
No 35
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=97.72 E-value=8.5e-05 Score=80.53 Aligned_cols=90 Identities=17% Similarity=0.195 Sum_probs=65.4
Q ss_pred HHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc---
Q 045475 135 ALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF--- 211 (662)
Q Consensus 135 pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl--- 211 (662)
...++.+||+||+.+ +...|.|.+... ++...|+|.|||.||+++.+.+++...++........-+.+|+||
T Consensus 354 l~~~l~nli~NA~~~---~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~~~~~g~GlGL~iv 428 (461)
T PRK09470 354 LASALENIVRNALRY---SHTKIEVAFSVD--KDGLTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLAIV 428 (461)
T ss_pred HHHHHHHHHHHHHHh---CCCcEEEEEEEE--CCEEEEEEEECCCCCCHHHHHHhcCCCccCCcccCCCCCCcchhHHHH
Confidence 346899999999986 345677777653 355689999999999999999998866654322122345678887
Q ss_pred cccccccCCEEEEEeeeC
Q 045475 212 KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 212 KsAs~rlg~~v~V~Sk~~ 229 (662)
+.....+|+.+.|.|...
T Consensus 429 ~~~v~~~~G~l~~~s~~~ 446 (461)
T PRK09470 429 ENAIQQHRGWVKAEDSPL 446 (461)
T ss_pred HHHHHHCCCEEEEEECCC
Confidence 344567899999988654
No 36
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=97.69 E-value=8.9e-05 Score=82.98 Aligned_cols=89 Identities=20% Similarity=0.297 Sum_probs=67.6
Q ss_pred HHHHHHHhccchhhhhc---CCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc-
Q 045475 136 LGAFAELLDNSLDEVCN---GATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF- 211 (662)
Q Consensus 136 f~AIaELVDNAiDA~~a---gAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl- 211 (662)
..++.+|++||+++... +...|.|.+... ++...|.|.|||.||+++.+.++|..|+++|... .|..|+||
T Consensus 434 ~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~~---~~g~GlGL~ 508 (545)
T PRK15053 434 AAIVGNLLDNAFEASLRSDEGNKIVELFLSDE--GDDVVIEVADQGCGVPESLRDKIFEQGVSTRADE---PGEHGIGLY 508 (545)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCceEEEEEEEC--CCEEEEEEEeCCCCcCHHHHHHHhCCCCCCCCCC---CCCceeCHH
Confidence 36899999999998532 345677776543 4567899999999999999999999999876432 23458887
Q ss_pred --cccccccCCEEEEEeeeC
Q 045475 212 --KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 212 --KsAs~rlg~~v~V~Sk~~ 229 (662)
|...-.+|+.+.|.|...
T Consensus 509 ivk~iv~~~~G~i~v~s~~~ 528 (545)
T PRK15053 509 LIASYVTRCGGVITLEDNDP 528 (545)
T ss_pred HHHHHHHHcCCEEEEEECCC
Confidence 455567899999988743
No 37
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.69 E-value=0.00021 Score=59.42 Aligned_cols=88 Identities=18% Similarity=0.247 Sum_probs=60.2
Q ss_pred HHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccccc---
Q 045475 137 GAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGFKT--- 213 (662)
Q Consensus 137 ~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~GlKs--- 213 (662)
.++.|||+||+++.......|.|.+... ++...|.|.|+|.||++..+...+.... +.......+..|+|++.
T Consensus 3 ~~~~~ll~Na~~~~~~~~~~v~i~~~~~--~~~~~v~i~d~g~g~~~~~~~~~~~~~~--~~~~~~~~~~~g~gl~~~~~ 78 (103)
T cd00075 3 QVLLNLLSNAIKHTPEGGGRITISVERD--GDHLEIRVEDNGPGIPEEDLERIFERFS--DGSRSRKGGGTGLGLSIVKK 78 (103)
T ss_pred HHHHHHHHHHHHhCcCCCCeEEEEEEec--CCEEEEEEEeCCCCCCHHHHHHHhhhhh--cCCCCCCCCccccCHHHHHH
Confidence 5899999999997332135666666543 3567899999999999999988765321 11122344577888853
Q ss_pred cccccCCEEEEEeee
Q 045475 214 STMRLGADVIVFSRC 228 (662)
Q Consensus 214 As~rlg~~v~V~Sk~ 228 (662)
...++|+.+.+.+..
T Consensus 79 ~~~~~~g~~~~~~~~ 93 (103)
T cd00075 79 LVELHGGRIEVESEP 93 (103)
T ss_pred HHHHcCCEEEEEeCC
Confidence 334567888887764
No 38
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=97.67 E-value=0.00014 Score=78.39 Aligned_cols=91 Identities=18% Similarity=0.231 Sum_probs=66.0
Q ss_pred hhHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc-
Q 045475 133 KWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF- 211 (662)
Q Consensus 133 ~~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl- 211 (662)
.....++.+||+||+.+.. ....|.|.+..+ ++...|.|.|||.||+++.+.++|..+++.+......-+-.|+||
T Consensus 352 ~~l~~~~~nll~Nai~~~~-~~~~I~i~~~~~--~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~~~~~g~GlGL~ 428 (457)
T TIGR01386 352 QMFRRAISNLLSNALRHTP-DGGTITVRIERR--SDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPARSNSGEGTGLGLA 428 (457)
T ss_pred HHHHHHHHHHHHHHHHcCC-CCceEEEEEEec--CCEEEEEEEeCCCCCCHHHHHHhccccccCCcccCCCCCCccccHH
Confidence 3345689999999999622 135688877653 456789999999999999999999877765432112234468887
Q ss_pred --cccccccCCEEEEEe
Q 045475 212 --KTSTMRLGADVIVFS 226 (662)
Q Consensus 212 --KsAs~rlg~~v~V~S 226 (662)
+....++|+.+.+.+
T Consensus 429 i~~~~~~~~~G~~~~~~ 445 (457)
T TIGR01386 429 IVRSIMEAHGGRASAES 445 (457)
T ss_pred HHHHHHHHCCCEEEEEe
Confidence 445567899999988
No 39
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=97.66 E-value=0.00014 Score=80.64 Aligned_cols=86 Identities=29% Similarity=0.451 Sum_probs=66.2
Q ss_pred HHHHHHHHhccchhhhhc-CCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc--
Q 045475 135 ALGAFAELLDNSLDEVCN-GATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF-- 211 (662)
Q Consensus 135 pf~AIaELVDNAiDA~~a-gAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl-- 211 (662)
...++.+|++||+++... ....|.|.+... ++...|.|.|||.||+++++.++|..++++|.. -.|+||
T Consensus 434 l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~--~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~~~~------g~GlGL~i 505 (542)
T PRK11086 434 LITILGNLIENALEAVGGEEGGEISVSLHYR--NGWLHCEVSDDGPGIAPDEIDAIFDKGYSTKGS------NRGVGLYL 505 (542)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcEEEEEEEEc--CCEEEEEEEECCCCCCHHHHHHHHhCCCccCCC------CCcCcHHH
Confidence 347899999999998532 235677777653 356789999999999999999999988887632 238887
Q ss_pred -cccccccCCEEEEEeee
Q 045475 212 -KTSTMRLGADVIVFSRC 228 (662)
Q Consensus 212 -KsAs~rlg~~v~V~Sk~ 228 (662)
|...-.+|+.+.|.|..
T Consensus 506 v~~iv~~~~G~i~v~s~~ 523 (542)
T PRK11086 506 VKQSVENLGGSIAVESEP 523 (542)
T ss_pred HHHHHHHcCCEEEEEeCC
Confidence 45556789999998864
No 40
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=97.62 E-value=0.00014 Score=79.17 Aligned_cols=93 Identities=17% Similarity=0.211 Sum_probs=67.5
Q ss_pred hHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc--
Q 045475 134 WALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF-- 211 (662)
Q Consensus 134 ~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl-- 211 (662)
....++.+||+||+.+... ...|.|.+... ++...|.|.|||.||+++++.+++...++.+.......|..|+||
T Consensus 352 ~l~qvl~nll~NAi~~~~~-~~~I~i~~~~~--~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~~~~~~~g~GlGL~i 428 (466)
T PRK10549 352 RLMQLFNNLLENSLRYTDS-GGSLHISAEQR--DKTLRLTFADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAI 428 (466)
T ss_pred HHHHHHHHHHHHHHHhCCC-CCEEEEEEEEc--CCEEEEEEEecCCCcCHHHHHHhccCcccCCCCcCCCCCCCcHHHHH
Confidence 3447899999999997322 34677777653 356789999999999999999999866655432223345668887
Q ss_pred -cccccccCCEEEEEeeeC
Q 045475 212 -KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 212 -KsAs~rlg~~v~V~Sk~~ 229 (662)
+....++|+.+.+.+...
T Consensus 429 v~~i~~~~~G~l~~~s~~~ 447 (466)
T PRK10549 429 CLNIVEAHNGRIIAAHSPF 447 (466)
T ss_pred HHHHHHHcCCEEEEEECCC
Confidence 445567899999988754
No 41
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=97.59 E-value=0.00018 Score=71.92 Aligned_cols=88 Identities=16% Similarity=0.223 Sum_probs=64.9
Q ss_pred hhHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc-
Q 045475 133 KWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF- 211 (662)
Q Consensus 133 ~~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl- 211 (662)
.+.-.+|.+||+||+++.. ...|.|.+.... +...|.|.|||.||+++.+..+|..+++.+.... -.|+||
T Consensus 227 ~~l~~vl~nLi~NAi~~~~--~~~i~i~~~~~~--~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~----g~GlGL~ 298 (336)
T COG0642 227 ERLRQVLVNLLSNAIKYTP--GGEITISVRQDD--EQVTISVEDTGPGIPEEELERIFEPFFRTDKSRS----GTGLGLA 298 (336)
T ss_pred HHHHHHHHHHHHHHhccCC--CCeEEEEEEecC--CeEEEEEEcCCCCCCHHHHHHhccCeeccCCCCC----CCCccHH
Confidence 5555699999999999732 577888776532 3578999999999999999999998888764321 346666
Q ss_pred --cccccccCCEEEEEeee
Q 045475 212 --KTSTMRLGADVIVFSRC 228 (662)
Q Consensus 212 --KsAs~rlg~~v~V~Sk~ 228 (662)
|...-..|+.+.+.|..
T Consensus 299 i~~~~~~~~~g~i~~~~~~ 317 (336)
T COG0642 299 IVKRIVELHGGTISVESEP 317 (336)
T ss_pred HHHHHHHHcCCEEEEEecC
Confidence 34445677777777765
No 42
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=97.57 E-value=0.0004 Score=58.70 Aligned_cols=88 Identities=23% Similarity=0.357 Sum_probs=61.5
Q ss_pred HHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCccccccc---
Q 045475 136 LGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGFK--- 212 (662)
Q Consensus 136 f~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~GlK--- 212 (662)
..++.+|++||+++... ...|.|.+... ++...|.|.|+|.||+.+.+...+..+++.+. .....+.+|+||+
T Consensus 7 ~~~~~~l~~n~~~~~~~-~~~v~i~~~~~--~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~gl~~~~ 82 (111)
T smart00387 7 RQVLSNLLDNAIKYTPE-GGRITVTLERD--GDHLEITVEDNGPGIPPEDLEKIFEPFFRTDG-RSRKIGGTGLGLSIVK 82 (111)
T ss_pred HHHHHHHHHHHHhcCCC-CCeEEEEEEEc--CCEEEEEEEeCCCCCCHHHHHHHhcCeEECCC-CCCCCCcccccHHHHH
Confidence 46899999999996321 24677777653 35678999999999999999998876655432 2234466899984
Q ss_pred ccccccCCEEEEEee
Q 045475 213 TSTMRLGADVIVFSR 227 (662)
Q Consensus 213 sAs~rlg~~v~V~Sk 227 (662)
.....++.++.+.+.
T Consensus 83 ~~~~~~~g~~~~~~~ 97 (111)
T smart00387 83 KLVELHGGEISVESE 97 (111)
T ss_pred HHHHHcCCEEEEEec
Confidence 333456777666544
No 43
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=97.55 E-value=0.00022 Score=75.46 Aligned_cols=90 Identities=20% Similarity=0.221 Sum_probs=66.6
Q ss_pred hhHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc-
Q 045475 133 KWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF- 211 (662)
Q Consensus 133 ~~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl- 211 (662)
.|...++.+||+||+.+.. ....|.|.+..+ ++...|.|.|||.||+++++.+++..++.... .-+-.|+||
T Consensus 246 ~~l~~il~nLi~NA~k~~~-~~~~I~I~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~g~GlGL~ 318 (356)
T PRK10755 246 TLLRLLLRNLVENAHRYSP-EGSTITIKLSQE--DGGAVLAVEDEGPGIDESKCGELSKAFVRMDS----RYGGIGLGLS 318 (356)
T ss_pred HHHHHHHHHHHHHHHhhCC-CCCcEEEEEEEc--CCEEEEEEEECCCCCCHHHHHHhCCCeEeCCC----CCCCcCHHHH
Confidence 5566899999999998632 245677777543 35678999999999999999999886654321 123468887
Q ss_pred --cccccccCCEEEEEeeeC
Q 045475 212 --KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 212 --KsAs~rlg~~v~V~Sk~~ 229 (662)
+...-.+|+.+.+.|...
T Consensus 319 i~~~i~~~~gg~i~i~s~~~ 338 (356)
T PRK10755 319 IVSRITQLHHGQFFLQNRQE 338 (356)
T ss_pred HHHHHHHHCCCEEEEEECCC
Confidence 444567899999988764
No 44
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=97.53 E-value=0.00023 Score=76.96 Aligned_cols=89 Identities=19% Similarity=0.214 Sum_probs=64.3
Q ss_pred hHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc--
Q 045475 134 WALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF-- 211 (662)
Q Consensus 134 ~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl-- 211 (662)
....++.+||+||+.. +...|.|.+..+ ++...|+|.|||.||+++++.+++..++..... ..-+-+|+||
T Consensus 331 ~l~~il~NLl~NA~k~---~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~~--~~~~g~GlGL~i 403 (435)
T PRK09467 331 AIKRALANLVVNAARY---GNGWIKVSSGTE--GKRAWFQVEDDGPGIPPEQLKHLFQPFTRGDSA--RGSSGTGLGLAI 403 (435)
T ss_pred HHHHHHHHHHHHHHHh---CCCeEEEEEEec--CCEEEEEEEecCCCcCHHHHHHhcCCcccCCCC--CCCCCeehhHHH
Confidence 3446899999999986 456787777653 355789999999999999999999866643211 1124578887
Q ss_pred -cccccccCCEEEEEeeeC
Q 045475 212 -KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 212 -KsAs~rlg~~v~V~Sk~~ 229 (662)
+...-.+|+++.+.+...
T Consensus 404 v~~i~~~~~g~l~i~~~~~ 422 (435)
T PRK09467 404 VKRIVDQHNGKVELGNSEE 422 (435)
T ss_pred HHHHHHHCCCEEEEEECCC
Confidence 344456889999877643
No 45
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=97.52 E-value=0.00028 Score=83.09 Aligned_cols=93 Identities=18% Similarity=0.168 Sum_probs=68.5
Q ss_pred hHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc--
Q 045475 134 WALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF-- 211 (662)
Q Consensus 134 ~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl-- 211 (662)
....+|.+||+||+++... ...|.|.+..+ ++...|.|.|||.||+++.+.++|...++.+......-+..|+||
T Consensus 597 ~L~~il~NLI~NAik~s~~-~~~I~I~~~~~--~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~~~~~~~g~GLGL~I 673 (703)
T TIGR03785 597 LIAQMLDKLVDNAREFSPE-DGLIEVGLSQN--KSHALLTVSNEGPPLPEDMGEQLFDSMVSVRDQGAQDQPHLGLGLYI 673 (703)
T ss_pred HHHHHHHHHHHHHHHHCCC-CCeEEEEEEEc--CCEEEEEEEEcCCCCCHHHHHHHhCCCeecCCCCCCCCCCccHHHHH
Confidence 3447899999999997432 34577777653 356789999999999999999999877765432222223478887
Q ss_pred -cccccccCCEEEEEeeeC
Q 045475 212 -KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 212 -KsAs~rlg~~v~V~Sk~~ 229 (662)
+.....+|+.+.+.+...
T Consensus 674 vr~Iv~~~gG~I~v~s~~~ 692 (703)
T TIGR03785 674 VRLIADFHQGRIQAENRQQ 692 (703)
T ss_pred HHHHHHHcCCEEEEEECCC
Confidence 556677899999988754
No 46
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=97.48 E-value=0.00038 Score=71.07 Aligned_cols=94 Identities=20% Similarity=0.251 Sum_probs=65.2
Q ss_pred hhHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc-
Q 045475 133 KWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF- 211 (662)
Q Consensus 133 ~~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl- 211 (662)
.....++.+||.||+++.. ....|.|.+... ++...|.|.|||.||+++.+.+++...++.+.......+-.|+||
T Consensus 228 ~~l~~vl~nll~Nai~~~~-~~~~i~i~~~~~--~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~~~~~g~glGL~ 304 (333)
T TIGR02966 228 DELRSAFSNLVSNAIKYTP-EGGTITVRWRRD--GGGAEFSVTDTGIGIAPEHLPRLTERFYRVDKSRSRDTGGTGLGLA 304 (333)
T ss_pred HHHHHHHHHHHHHhheeCC-CCCeEEEEEEEc--CCEEEEEEEecCCCCCHHHHhhhccCceecCcccccCCCCCcccHH
Confidence 4455799999999999632 234577766553 345789999999999999999999866543221111223348887
Q ss_pred --cccccccCCEEEEEeeeC
Q 045475 212 --KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 212 --KsAs~rlg~~v~V~Sk~~ 229 (662)
+...-.+|+++.+.|...
T Consensus 305 ~~~~~~~~~gG~i~~~s~~~ 324 (333)
T TIGR02966 305 IVKHVLSRHHARLEIESELG 324 (333)
T ss_pred HHHHHHHHCCCEEEEEecCC
Confidence 344456899999988753
No 47
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=97.45 E-value=0.00032 Score=73.62 Aligned_cols=88 Identities=14% Similarity=0.117 Sum_probs=62.4
Q ss_pred HHHHHHHHhccchhhhhcCCceEEEEEEecC----CC----CeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCc
Q 045475 135 ALGAFAELLDNSLDEVCNGATYVQVDLLKNK----TD----GTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQ 206 (662)
Q Consensus 135 pf~AIaELVDNAiDA~~agAt~V~I~i~~~~----~~----g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~ 206 (662)
...++.+||+||+.+.......|.|...... .+ ....|.|.|||.||+++.+.++|..+++++.. -
T Consensus 238 l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~~~------g 311 (348)
T PRK11073 238 IEQVLLNIVRNALQALGPEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGREG------G 311 (348)
T ss_pred HHHHHHHHHHHHHHHhccCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCCCC------C
Confidence 4489999999999975333455666543210 00 12468999999999999999999877766532 2
Q ss_pred ccccc---cccccccCCEEEEEeee
Q 045475 207 YGNGF---KTSTMRLGADVIVFSRC 228 (662)
Q Consensus 207 fG~Gl---KsAs~rlg~~v~V~Sk~ 228 (662)
-|+|| |.....+|+.+.|.|..
T Consensus 312 ~GlGL~i~~~iv~~~gG~i~~~s~~ 336 (348)
T PRK11073 312 TGLGLSIARNLIDQHSGKIEFTSWP 336 (348)
T ss_pred ccCCHHHHHHHHHHcCCeEEEEecC
Confidence 37776 55666789999998864
No 48
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=97.41 E-value=0.00014 Score=83.32 Aligned_cols=88 Identities=28% Similarity=0.315 Sum_probs=66.2
Q ss_pred HHHHHhccchhhhhcC-CceEEEEEEecCCCCeeEEEEEECCCCCCHHH--------HHhhhh-ccccccccC---CCcc
Q 045475 138 AFAELLDNSLDEVCNG-ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDK--------MRQCMS-LGYSAKSKL---ANTI 204 (662)
Q Consensus 138 AIaELVDNAiDA~~ag-At~V~I~i~~~~~~g~~~L~I~DNG~GM~~ee--------l~~~~~-~G~S~K~~~---~~~I 204 (662)
-+.|+||||+|...|| |+.|.|.+.. ...|+|.|||.||+.+- ++-+|. +....|-.+ .-+-
T Consensus 40 lv~EVvDNsiDEalaG~~~~I~V~l~~-----d~sisV~DnGRGIPvdiH~~~~~~~vEvI~T~LHAGGKFd~~~YkvSG 114 (635)
T COG0187 40 LVWEVVDNSIDEALAGYADRIDVTLHE-----DGSISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHAGGKFDNDSYKVSG 114 (635)
T ss_pred eEeEeeechHhHHhhCcCcEEEEEEcC-----CCeEEEEECCCCCccccCCCCCCCceEEEEEeeccCcccCCCccEeec
Confidence 4579999999998887 8888888864 35799999999999865 344554 444444221 1356
Q ss_pred CcccccccccccccCCEEEEEeeeCCC
Q 045475 205 GQYGNGFKTSTMRLGADVIVFSRCQGT 231 (662)
Q Consensus 205 G~fG~GlKsAs~rlg~~v~V~Sk~~g~ 231 (662)
|..|+|. ++.-.|...+.|.+++.|.
T Consensus 115 GLHGVG~-SVVNALS~~l~v~v~r~gk 140 (635)
T COG0187 115 GLHGVGV-SVVNALSTWLEVEVKRDGK 140 (635)
T ss_pred CCCccce-EEEecccceEEEEEEECCE
Confidence 8999996 6777899999999998764
No 49
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=97.40 E-value=0.00041 Score=75.08 Aligned_cols=93 Identities=22% Similarity=0.220 Sum_probs=67.6
Q ss_pred hhHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc-
Q 045475 133 KWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF- 211 (662)
Q Consensus 133 ~~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl- 211 (662)
.+...++.+||.||+.+. .....|.|.+... ++...|+|.|||.||+++++.++|..+++.+... ..-+..|+||
T Consensus 367 ~~l~~vl~nli~Na~~~~-~~~~~i~i~~~~~--~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~~-~~~~~~GlGL~ 442 (475)
T PRK11100 367 FLLRQALGNLLDNAIDFS-PEGGTITLSAEVD--GEQVALSVEDQGPGIPDYALPRIFERFYSLPRPA-NGRKSTGLGLA 442 (475)
T ss_pred HHHHHHHHHHHHHHHHhC-CCCCEEEEEEEEc--CCEEEEEEEECCCCCCHHHHHHHHHHHccCCCCC-CCCCCcchhHH
Confidence 456689999999999962 1346788877653 4567899999999999999999998776553211 1223458887
Q ss_pred --cccccccCCEEEEEeeeC
Q 045475 212 --KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 212 --KsAs~rlg~~v~V~Sk~~ 229 (662)
+.-...+|+.+.+.|...
T Consensus 443 i~~~~~~~~~G~i~i~s~~~ 462 (475)
T PRK11100 443 FVREVARLHGGEVTLRNRPE 462 (475)
T ss_pred HHHHHHHHCCCEEEEEEcCC
Confidence 344567899999988753
No 50
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=97.40 E-value=0.00052 Score=81.88 Aligned_cols=89 Identities=18% Similarity=0.214 Sum_probs=66.6
Q ss_pred hHHHHHHHHhccchhhhhcCCceEEEEEEec-------------CCCCeeEEEEEECCCCCCHHHHHhhhhccccccccC
Q 045475 134 WALGAFAELLDNSLDEVCNGATYVQVDLLKN-------------KTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKL 200 (662)
Q Consensus 134 ~pf~AIaELVDNAiDA~~agAt~V~I~i~~~-------------~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~ 200 (662)
....++.+||+||+.+.. ....|.|.+... ..++...|.|.|||.||+++.+.++|...++++.
T Consensus 560 ~L~qvl~NLl~NAik~~~-~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~-- 636 (828)
T PRK13837 560 ELQQVLMNLCSNAAQAMD-GAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA-- 636 (828)
T ss_pred HHHHHHHHHHHHHHHHcc-cCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC--
Confidence 345899999999999743 235677776553 1134567999999999999999999987776642
Q ss_pred CCccCcccccc---cccccccCCEEEEEeeeC
Q 045475 201 ANTIGQYGNGF---KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 201 ~~~IG~fG~Gl---KsAs~rlg~~v~V~Sk~~ 229 (662)
+-.|+|| +...-.+|+.+.|.|...
T Consensus 637 ----~G~GLGL~i~~~iv~~~gG~i~v~s~~g 664 (828)
T PRK13837 637 ----GGTGLGLATVHGIVSAHAGYIDVQSTVG 664 (828)
T ss_pred ----CCCcchHHHHHHHHHHCCCEEEEEecCC
Confidence 4458887 455667999999988743
No 51
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=97.39 E-value=0.00058 Score=75.43 Aligned_cols=87 Identities=21% Similarity=0.335 Sum_probs=64.0
Q ss_pred HHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc---
Q 045475 135 ALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF--- 211 (662)
Q Consensus 135 pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl--- 211 (662)
...++.+|++||+.+... ...|.|.+.... ++...|.|.|||.||+++.+.++|..+++.+.. ..|+||
T Consensus 501 l~~~~~nli~na~~~~~~-~~~i~v~~~~~~-~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~~~------g~glGL~~~ 572 (607)
T PRK11360 501 LKQVLLNILINAVQAISA-RGKIRIRTWQYS-DGQVAVSIEDNGCGIDPELLKKIFDPFFTTKAK------GTGLGLALS 572 (607)
T ss_pred HHHHHHHHHHHHHHHhcC-CCeEEEEEEEcC-CCEEEEEEEeCCCCCCHHHHhhhcCCceeCCCC------CCchhHHHH
Confidence 447899999999997433 346777765432 222789999999999999999999877765421 247776
Q ss_pred cccccccCCEEEEEeeeC
Q 045475 212 KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 212 KsAs~rlg~~v~V~Sk~~ 229 (662)
+.....+|+++.|.|...
T Consensus 573 ~~~~~~~~G~i~~~s~~~ 590 (607)
T PRK11360 573 QRIINAHGGDIEVESEPG 590 (607)
T ss_pred HHHHHHcCCEEEEEEcCC
Confidence 444557899999988754
No 52
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=97.35 E-value=0.00061 Score=80.17 Aligned_cols=92 Identities=21% Similarity=0.247 Sum_probs=66.9
Q ss_pred HHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhcccccccc-CCCccCcccccc--
Q 045475 135 ALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSK-LANTIGQYGNGF-- 211 (662)
Q Consensus 135 pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~-~~~~IG~fG~Gl-- 211 (662)
...++.+||+||+++. ....|.|.+.... ++...|.|.|||.||+++++.++|...++.|.. .....+--|+||
T Consensus 399 l~qvl~NLl~NAik~~--~~g~v~i~~~~~~-~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL~i 475 (779)
T PRK11091 399 LRQILWNLISNAVKFT--QQGGVTVRVRYEE-GDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLAV 475 (779)
T ss_pred HHHHHHHHHHHHHHhC--CCCcEEEEEEEcc-CCEEEEEEEecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHHHH
Confidence 4478999999999974 3345777766532 345789999999999999999999866665422 112234457777
Q ss_pred -cccccccCCEEEEEeeeC
Q 045475 212 -KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 212 -KsAs~rlg~~v~V~Sk~~ 229 (662)
|...-.+|+.+.|.|...
T Consensus 476 ~~~iv~~~gG~i~v~s~~g 494 (779)
T PRK11091 476 SKRLAQAMGGDITVTSEEG 494 (779)
T ss_pred HHHHHHHcCCEEEEEecCC
Confidence 555567999999988754
No 53
>PRK10815 sensor protein PhoQ; Provisional
Probab=97.34 E-value=0.00049 Score=77.41 Aligned_cols=85 Identities=19% Similarity=0.266 Sum_probs=63.0
Q ss_pred HHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc---c
Q 045475 136 LGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF---K 212 (662)
Q Consensus 136 f~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl---K 212 (662)
..++.+||+||+.+. ...|.|.+... ++...|.|.|||.||+++++.++|..++..... -+-.|+|| +
T Consensus 380 ~~vl~NLi~NAik~~---~~~i~I~~~~~--~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~~----~~G~GLGL~Ivk 450 (485)
T PRK10815 380 MEVMGNVLDNACKYC---LEFVEISARQT--DEHLHIVVEDDGPGIPESKRELIFDRGQRADTL----RPGQGLGLSVAR 450 (485)
T ss_pred HHHHHHHHHHHHHhc---CCcEEEEEEEe--CCEEEEEEEECCCCcCHHHHHHHhCCcccCCCC----CCCcchhHHHHH
Confidence 469999999999963 34566666543 356689999999999999999999876654321 12358887 4
Q ss_pred ccccccCCEEEEEeeeC
Q 045475 213 TSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 213 sAs~rlg~~v~V~Sk~~ 229 (662)
...-.+|+.+.|.|...
T Consensus 451 ~iv~~~gG~i~v~s~~~ 467 (485)
T PRK10815 451 EITEQYEGKISAGDSPL 467 (485)
T ss_pred HHHHHcCCEEEEEECCC
Confidence 55567999999988754
No 54
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=97.33 E-value=0.00073 Score=80.34 Aligned_cols=89 Identities=18% Similarity=0.260 Sum_probs=65.5
Q ss_pred hhHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc-
Q 045475 133 KWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF- 211 (662)
Q Consensus 133 ~~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl- 211 (662)
.....+|.+||+||+.+. ....|.|.+... ++...|.|.|||.||+++++.++|...++.+. ..+-.|+||
T Consensus 512 ~~l~~il~NLl~NAik~~--~~g~I~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~g~GLGL~ 583 (921)
T PRK15347 512 LRLRQILVNLLGNAVKFT--ETGGIRLRVKRH--EQQLCFTVEDTGCGIDIQQQQQIFTPFYQADT----HSQGTGLGLT 583 (921)
T ss_pred HHHHHHHHHHHHHHhhcC--CCCCEEEEEEEc--CCEEEEEEEEcCCCCCHHHHHHHhcCcccCCC----CCCCCchHHH
Confidence 345579999999999973 234577776653 35678999999999999999999986555432 224468887
Q ss_pred --cccccccCCEEEEEeeeC
Q 045475 212 --KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 212 --KsAs~rlg~~v~V~Sk~~ 229 (662)
+...-.+|+.+.|.|...
T Consensus 584 i~~~~~~~~gG~i~i~s~~~ 603 (921)
T PRK15347 584 IASSLAKMMGGELTLFSTPG 603 (921)
T ss_pred HHHHHHHHcCCEEEEEecCC
Confidence 444567899999988753
No 55
>PRK09835 sensor kinase CusS; Provisional
Probab=97.33 E-value=0.00065 Score=74.29 Aligned_cols=92 Identities=21% Similarity=0.208 Sum_probs=65.0
Q ss_pred hhHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc-
Q 045475 133 KWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF- 211 (662)
Q Consensus 133 ~~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl- 211 (662)
.....+|.+||+||+.+.. ....|.|.+... ++...|.|.|||.||+++++..++...++........-+..|+||
T Consensus 374 ~~l~~vl~nll~Na~~~~~-~~~~I~i~~~~~--~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~ 450 (482)
T PRK09835 374 LMLRRAISNLLSNALRYTP-AGEAITVRCQEV--DHQVQLVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLA 450 (482)
T ss_pred HHHHHHHHHHHHHHHhcCC-CCCeEEEEEEEe--CCEEEEEEEECCCCcCHHHHHHHhCCcccCCCCCCCCCCCcchHHH
Confidence 3455789999999999632 234577777653 345789999999999999999998755543211111224468887
Q ss_pred --cccccccCCEEEEEee
Q 045475 212 --KTSTMRLGADVIVFSR 227 (662)
Q Consensus 212 --KsAs~rlg~~v~V~Sk 227 (662)
+.....+|+++.|.|.
T Consensus 451 i~~~i~~~~~g~i~~~s~ 468 (482)
T PRK09835 451 IVKSIVVAHKGTVAVTSD 468 (482)
T ss_pred HHHHHHHHCCCEEEEEEC
Confidence 5556678999999875
No 56
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=97.28 E-value=0.0004 Score=80.98 Aligned_cols=86 Identities=21% Similarity=0.283 Sum_probs=64.7
Q ss_pred HHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHH-HHhhhhccccccccCCCccCcccccc--
Q 045475 135 ALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDK-MRQCMSLGYSAKSKLANTIGQYGNGF-- 211 (662)
Q Consensus 135 pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~ee-l~~~~~~G~S~K~~~~~~IG~fG~Gl-- 211 (662)
...++.+||+||+++.. ....|.|.+... ++...|.|.|||.||+++. .+++|...+++|. +-.|+|+
T Consensus 580 l~~vl~nLl~NAik~~~-~~~~I~I~~~~~--~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~~------~G~GLGL~i 650 (679)
T TIGR02916 580 LERVLGHLVQNALEATP-GEGRVAIRVERE--CGAARIEIEDSGCGMSPAFIRERLFKPFDTTKG------AGMGIGVYE 650 (679)
T ss_pred HHHHHHHHHHHHHHhCC-CCCcEEEEEEEc--CCEEEEEEEEcCCCcChHHHHHhcCCCCCCCCC------CCcchhHHH
Confidence 44689999999999732 234677777653 3567899999999999999 7788887777653 2357787
Q ss_pred -cccccccCCEEEEEeeeC
Q 045475 212 -KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 212 -KsAs~rlg~~v~V~Sk~~ 229 (662)
|...-.+|+++.|.|...
T Consensus 651 ~~~iv~~~gG~i~v~s~~g 669 (679)
T TIGR02916 651 CRQYVEEIGGRIEVESTPG 669 (679)
T ss_pred HHHHHHHcCCEEEEEecCC
Confidence 444567999999988753
No 57
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=97.28 E-value=0.00053 Score=78.28 Aligned_cols=85 Identities=22% Similarity=0.393 Sum_probs=62.9
Q ss_pred HHHHHHhccchhhhhcC-CceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc---c
Q 045475 137 GAFAELLDNSLDEVCNG-ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF---K 212 (662)
Q Consensus 137 ~AIaELVDNAiDA~~ag-At~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl---K 212 (662)
..+-+||.||+||+... ...|+|....+ ++.-.|.|.|||+||.++.+.++|..-+++|... + --|+|| .
T Consensus 500 QVLvNLl~NALDA~~~~~~~~i~i~~~~~--~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK~~~-~---GLGLGLaIS~ 573 (603)
T COG4191 500 QVLVNLLQNALDAMAGQEDRRLSIRAQRE--GGQVVLTVRDNGPGIAPEALPHLFEPFFTTKPVG-K---GLGLGLAISQ 573 (603)
T ss_pred HHHHHHHHHHHHHhcCCCCCeeEEEEEec--CCeEEEEEccCCCCCCHHHHHhhcCCccccCccc-C---CcchhHHHHH
Confidence 78999999999997532 45677777654 5678899999999999999999999777776321 1 014444 2
Q ss_pred ccccccCCEEEEEee
Q 045475 213 TSTMRLGADVIVFSR 227 (662)
Q Consensus 213 sAs~rlg~~v~V~Sk 227 (662)
...-.+|+.+.|.+-
T Consensus 574 ~i~~d~GGsL~v~n~ 588 (603)
T COG4191 574 NIARDLGGSLEVANH 588 (603)
T ss_pred HHHHHhCCeEEeecC
Confidence 333568999999743
No 58
>PRK10547 chemotaxis protein CheA; Provisional
Probab=97.26 E-value=0.0013 Score=77.28 Aligned_cols=90 Identities=21% Similarity=0.391 Sum_probs=63.7
Q ss_pred HHHHHHhccchhhhhc--------C---CceEEEEEEecCCCCeeEEEEEECCCCCCHHHHH------------------
Q 045475 137 GAFAELLDNSLDEVCN--------G---ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMR------------------ 187 (662)
Q Consensus 137 ~AIaELVDNAiDA~~a--------g---At~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~------------------ 187 (662)
..|.+||.||+|+-.. + ...|.|..... ++...|.|.|||.||+++.+.
T Consensus 388 dpL~hLirNAidHgie~p~~R~~~gkp~~G~I~l~a~~~--~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~e 465 (670)
T PRK10547 388 DPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEHQ--GGNICIEVTDDGAGLNRERILAKAASQGLAVSENMSDEE 465 (670)
T ss_pred HHHHHHHHHHHHhhccchhhHHhcCCCCCCceEEEEEEc--CCEEEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHHH
Confidence 3467999999996311 1 23477766543 456789999999999998764
Q ss_pred ---hhhhccccccccCCCccCcccccc---cccccccCCEEEEEeeeC
Q 045475 188 ---QCMSLGYSAKSKLANTIGQYGNGF---KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 188 ---~~~~~G~S~K~~~~~~IG~fG~Gl---KsAs~rlg~~v~V~Sk~~ 229 (662)
.+|..|+|++... ..+.-.|+|| |.....+|+.+.|.|...
T Consensus 466 ~~~lIF~pgfst~~~~-~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~g 512 (670)
T PRK10547 466 VGMLIFAPGFSTAEQV-TDVSGRGVGMDVVKRNIQEMGGHVEIQSKQG 512 (670)
T ss_pred HHHHhhcCCccccccc-ccCCCCchhHHHHHHHHHHcCCEEEEEecCC
Confidence 3566788876432 2344568998 566678999999999753
No 59
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=97.25 E-value=0.00035 Score=81.49 Aligned_cols=88 Identities=27% Similarity=0.322 Sum_probs=61.0
Q ss_pred HHHHHHhccchhhhhcC-CceEEEEEEecCCCCeeEEEEEECCCCCCHHHH--------Hhhhh-ccccccccC---CCc
Q 045475 137 GAFAELLDNSLDEVCNG-ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKM--------RQCMS-LGYSAKSKL---ANT 203 (662)
Q Consensus 137 ~AIaELVDNAiDA~~ag-At~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel--------~~~~~-~G~S~K~~~---~~~ 203 (662)
..+.|+||||+|...++ ++.|.|.|.. ...|+|.|||.||+.+.- +-+|. +..+.|-.+ .-+
T Consensus 37 hlv~EIvdNavDE~~ag~~~~I~V~i~~-----dgsitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGgkfd~~~ykvS 111 (637)
T TIGR01058 37 HLVWEIVDNSVDEVLAGYADNITVTLHK-----DNSITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGGKFDQGGYKTA 111 (637)
T ss_pred eehhhhhcchhhhhhcCCCcEEEEEEcC-----CCeEEEEECCCcccCcccCcCCCccceeEEEEecccCcCCCCccccc
Confidence 35679999999977655 7888888863 237999999999986421 11233 222233211 235
Q ss_pred cCcccccccccccccCCEEEEEeeeCC
Q 045475 204 IGQYGNGFKTSTMRLGADVIVFSRCQG 230 (662)
Q Consensus 204 IG~fG~GlKsAs~rlg~~v~V~Sk~~g 230 (662)
-|..|+|.+ ++-.+...+.|.+++.|
T Consensus 112 GGlhGvG~s-vvNAlS~~~~V~v~r~g 137 (637)
T TIGR01058 112 GGLHGVGAS-VVNALSSWLEVTVKRDG 137 (637)
T ss_pred CCccccccc-ccceeeceEEEEEEECC
Confidence 699999984 56678899999998765
No 60
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=97.24 E-value=0.0011 Score=78.68 Aligned_cols=94 Identities=14% Similarity=0.181 Sum_probs=62.2
Q ss_pred hHHHHHHHHhccchhhhhcCCceEEEEEEecCC-CC--eeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCccccc
Q 045475 134 WALGAFAELLDNSLDEVCNGATYVQVDLLKNKT-DG--THMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNG 210 (662)
Q Consensus 134 ~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~-~g--~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~G 210 (662)
....+|.+||+||+.+... ..|.|.+..... ++ ...|.|.|||.||+++++.++|...+..........|-.|+|
T Consensus 408 ~l~~vl~NLl~NAik~~~~--g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GLG 485 (919)
T PRK11107 408 RLQQIITNLVGNAIKFTES--GNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGTGLG 485 (919)
T ss_pred HHHHHHHHHHHHHhhcCCC--CcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCCCCCCCCCcchh
Confidence 3457899999999997432 344444432211 11 356999999999999999999874443211111223556888
Q ss_pred c---cccccccCCEEEEEeeeC
Q 045475 211 F---KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 211 l---KsAs~rlg~~v~V~Sk~~ 229 (662)
| |...-.+|+.+.|.|...
T Consensus 486 L~i~~~i~~~~gG~i~v~s~~~ 507 (919)
T PRK11107 486 LVITQKLVNEMGGDISFHSQPN 507 (919)
T ss_pred HHHHHHHHHHhCCEEEEEecCC
Confidence 7 455567999999988754
No 61
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=97.22 E-value=0.0012 Score=79.81 Aligned_cols=93 Identities=12% Similarity=0.103 Sum_probs=64.7
Q ss_pred hHHHHHHHHhccchhhhhcCCceEEEEEEecCC-CCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc-
Q 045475 134 WALGAFAELLDNSLDEVCNGATYVQVDLLKNKT-DGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF- 211 (662)
Q Consensus 134 ~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~-~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl- 211 (662)
....++.+||.||+.+.. ...|.|.+..... ++...|.|.|+|.||+++.+.++|...++.+... ..-+--|+||
T Consensus 565 ~L~QVL~NLL~NAik~t~--~G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~~~-~~~~GtGLGLa 641 (894)
T PRK10618 565 ALRKILLLLLNYAITTTA--YGKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHFPFLNQTQGD-RYGKASGLTFF 641 (894)
T ss_pred HHHHHHHHHHHHHHHhCC--CCeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcCccccCCCCC-CCCCCcChhHH
Confidence 344789999999999743 3356666654322 2456899999999999999999988555544321 1112347776
Q ss_pred --cccccccCCEEEEEeeeC
Q 045475 212 --KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 212 --KsAs~rlg~~v~V~Sk~~ 229 (662)
|...-.+|+.+.|.|...
T Consensus 642 I~k~Lve~~GG~I~v~S~~g 661 (894)
T PRK10618 642 LCNQLCRKLGGHLTIKSREG 661 (894)
T ss_pred HHHHHHHHcCCEEEEEECCC
Confidence 455567999999998754
No 62
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=97.16 E-value=0.0015 Score=77.96 Aligned_cols=89 Identities=18% Similarity=0.251 Sum_probs=65.6
Q ss_pred hhHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc-
Q 045475 133 KWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF- 211 (662)
Q Consensus 133 ~~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl- 211 (662)
.....++.+||+||+.+. ....|.|.+..+ ++...|.|.|||.||+++.+.++|...+..+. ..|-.|+||
T Consensus 560 ~~l~qil~NLl~NAik~~--~~g~I~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~g~GLGL~ 631 (914)
T PRK11466 560 RRIRQVITNLLSNALRFT--DEGSIVLRSRTD--GEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSG----KRGGTGLGLT 631 (914)
T ss_pred HHHHHHHHHHHHHHHHhC--CCCeEEEEEEEc--CCEEEEEEEECCCCCCHHHHHHHhchhhcCCC----CCCCCcccHH
Confidence 344579999999999973 345677777653 34567999999999999999999986554321 224568887
Q ss_pred --cccccccCCEEEEEeeeC
Q 045475 212 --KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 212 --KsAs~rlg~~v~V~Sk~~ 229 (662)
+...-.+|+.+.|.|...
T Consensus 632 i~~~l~~~~gG~i~v~s~~~ 651 (914)
T PRK11466 632 ISSRLAQAMGGELSATSTPE 651 (914)
T ss_pred HHHHHHHHcCCEEEEEecCC
Confidence 444567999999988754
No 63
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=97.12 E-value=0.0016 Score=78.15 Aligned_cols=91 Identities=16% Similarity=0.174 Sum_probs=66.0
Q ss_pred hhHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCe-eEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc
Q 045475 133 KWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGT-HMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF 211 (662)
Q Consensus 133 ~~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~-~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl 211 (662)
.....+|.+||+||+.+. ....|.|.+.... +. ..|.|.|||.||+++++.++|...++.+. ....|-.|+||
T Consensus 578 ~~l~~il~nLi~NAik~~--~~g~i~i~~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~--~~~~~g~GLGL 651 (968)
T TIGR02956 578 PRIRQVLINLVGNAIKFT--DRGSVVLRVSLND--DSSLLFEVEDTGCGIAEEEQATLFDAFTQADG--RRRSGGTGLGL 651 (968)
T ss_pred HHHHHHHHHHHHHHHhhC--CCCeEEEEEEEcC--CCeEEEEEEeCCCCCCHHHHHHHHhhhhccCC--CCCCCCccHHH
Confidence 344579999999999973 3456777776543 34 78999999999999999999875444431 12234568887
Q ss_pred ---cccccccCCEEEEEeeeC
Q 045475 212 ---KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 212 ---KsAs~rlg~~v~V~Sk~~ 229 (662)
|...-.+|+.+.|.|...
T Consensus 652 ~i~~~l~~~~gG~i~~~s~~~ 672 (968)
T TIGR02956 652 AISQRLVEAMDGELGVESELG 672 (968)
T ss_pred HHHHHHHHHcCCEEEEEecCC
Confidence 455567899999988754
No 64
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=97.09 E-value=0.00047 Score=79.49 Aligned_cols=90 Identities=26% Similarity=0.303 Sum_probs=66.3
Q ss_pred hhHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccc------cCCCccCc
Q 045475 133 KWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKS------KLANTIGQ 206 (662)
Q Consensus 133 ~~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~------~~~~~IG~ 206 (662)
+.. .++.|||-||+|| +|+.|.|.+.. ....+.|.|||.||+.++++..-..-+++|- ....+.|.
T Consensus 21 sla-~~VeElv~NSiDA---~At~V~v~V~~----~t~sv~ViDdG~G~~rdDl~~lg~ry~TSK~h~~ndl~~~~tyGf 92 (1142)
T KOG1977|consen 21 SLA-QCVEELVLNSIDA---EATCVAVRVNM----ETFSVQVIDDGFGMGRDDLEKLGNRYFTSKCHSVNDLENPRTYGF 92 (1142)
T ss_pred HHH-HHHHHHHhhcccc---CceEEEEEecC----ceeEEEEEecCCCccHHHHHHHHhhhhhhhceecccccccccccc
Confidence 444 8999999999995 99999888754 3578999999999999999987555455553 22345555
Q ss_pred ccccccccccccCCEEEEEeeeCCCC
Q 045475 207 YGNGFKTSTMRLGADVIVFSRCQGTD 232 (662)
Q Consensus 207 fG~GlKsAs~rlg~~v~V~Sk~~g~~ 232 (662)
.|-.| |+++=-..+.|.|+..+..
T Consensus 93 RGeAL--asIsd~s~l~v~skkk~r~ 116 (1142)
T KOG1977|consen 93 RGEAL--ASISDMSSLVVISKKKNRT 116 (1142)
T ss_pred chhhh--hhhhhhhhhhhhhhhcCCc
Confidence 55554 5555556778888887753
No 65
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=97.09 E-value=0.0015 Score=79.23 Aligned_cols=92 Identities=13% Similarity=0.161 Sum_probs=64.8
Q ss_pred hHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc--
Q 045475 134 WALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF-- 211 (662)
Q Consensus 134 ~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl-- 211 (662)
....+|.+||+||+.+. ....|.|.+... ++...|.|.|||.||+++++.++|...+..........+-.|+||
T Consensus 562 ~L~qvl~NLl~NAik~t--~~G~I~I~v~~~--~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~~~~~~~GtGLGL~I 637 (924)
T PRK10841 562 RLQQVISNLLSNAIKFT--DTGCIVLHVRVD--GDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAI 637 (924)
T ss_pred HHHHHHHHHHHHHHhhC--CCCcEEEEEEEe--CCEEEEEEEEcCcCCCHHHHHHHhcccccCCCCCCCCCCCeehhHHH
Confidence 34479999999999973 334566666543 356789999999999999999998755443221112223458887
Q ss_pred -cccccccCCEEEEEeeeC
Q 045475 212 -KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 212 -KsAs~rlg~~v~V~Sk~~ 229 (662)
+...-.+|+.+.|.|...
T Consensus 638 ~k~lv~~~gG~I~v~S~~g 656 (924)
T PRK10841 638 CEKLINMMDGDISVDSEPG 656 (924)
T ss_pred HHHHHHHCCCEEEEEEcCC
Confidence 344567899999988753
No 66
>PRK10337 sensor protein QseC; Provisional
Probab=97.03 E-value=0.0015 Score=71.22 Aligned_cols=87 Identities=22% Similarity=0.216 Sum_probs=61.8
Q ss_pred hhHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc-
Q 045475 133 KWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF- 211 (662)
Q Consensus 133 ~~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl- 211 (662)
.....++.+||+||+.+... ...|.|.+.. ..|+|.|||.||+++++.++|...+..+. ...+.+|+||
T Consensus 351 ~~l~~vl~Nli~NA~k~~~~-~~~i~i~~~~------~~i~i~D~G~Gi~~~~~~~if~~f~~~~~---~~~~g~GlGL~ 420 (449)
T PRK10337 351 LLLSLLVRNLLDNAIRYSPQ-GSVVDVTLNA------RNFTVRDNGPGVTPEALARIGERFYRPPG---QEATGSGLGLS 420 (449)
T ss_pred HHHHHHHHHHHHHHHhhCCC-CCeEEEEEEe------eEEEEEECCCCCCHHHHHHhcccccCCCC---CCCCccchHHH
Confidence 34446899999999997321 2346665542 36999999999999999999886654321 1234478887
Q ss_pred --cccccccCCEEEEEeeeC
Q 045475 212 --KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 212 --KsAs~rlg~~v~V~Sk~~ 229 (662)
+.....+|+.+.+.+...
T Consensus 421 iv~~i~~~~gg~l~~~s~~~ 440 (449)
T PRK10337 421 IVRRIAKLHGMNVSFGNAPE 440 (449)
T ss_pred HHHHHHHHcCCEEEEEecCC
Confidence 455567899999988653
No 67
>PRK13557 histidine kinase; Provisional
Probab=96.90 E-value=0.0026 Score=70.15 Aligned_cols=90 Identities=22% Similarity=0.263 Sum_probs=63.2
Q ss_pred HHHHHHHHhccchhhhhcCCceEEEEEEec-------------CCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCC
Q 045475 135 ALGAFAELLDNSLDEVCNGATYVQVDLLKN-------------KTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLA 201 (662)
Q Consensus 135 pf~AIaELVDNAiDA~~agAt~V~I~i~~~-------------~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~ 201 (662)
...++.+|+.||+++...+ ..|.|..... ..++...|.|.|||.||+++.+.++|...++.+..
T Consensus 278 l~~vl~nll~NA~~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~~-- 354 (540)
T PRK13557 278 AEVALLNVLINARDAMPEG-GRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKEE-- 354 (540)
T ss_pred HHHHHHHHHHHHHHhcccC-CeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCCC--
Confidence 3468999999999975433 3455544321 01234579999999999999999999877766432
Q ss_pred CccCcccccc---cccccccCCEEEEEeeeC
Q 045475 202 NTIGQYGNGF---KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 202 ~~IG~fG~Gl---KsAs~rlg~~v~V~Sk~~ 229 (662)
.+-.|+|| |.....+|+.+.|.|...
T Consensus 355 --~~g~GlGL~i~~~~v~~~gG~i~~~s~~~ 383 (540)
T PRK13557 355 --GKGTGLGLSMVYGFAKQSGGAVRIYSEVG 383 (540)
T ss_pred --CCCCCccHHHHHHHHHHCCCEEEEEecCC
Confidence 23447776 455667999999988753
No 68
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=96.89 E-value=0.00077 Score=80.48 Aligned_cols=120 Identities=23% Similarity=0.293 Sum_probs=74.6
Q ss_pred CCCCCCCCCCccCcccceeeeeChh-hhhhhhccchhHHHHHHHHhccchhhhhcC-CceEEEEEEecCCCCeeEEEEEE
Q 045475 99 DYEGGNAGDSLSNSVGMDHLRVHPK-FLHSNATSHKWALGAFAELLDNSLDEVCNG-ATYVQVDLLKNKTDGTHMLLVED 176 (662)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~p~-fL~s~stsh~~pf~AIaELVDNAiDA~~ag-At~V~I~i~~~~~~g~~~L~I~D 176 (662)
+|++.... .-.|+.+|+.-|. |+-+.+.. -....|-|+||||+|...+| ++.|.|.|.. ...|+|.|
T Consensus 99 ~Y~a~~I~----vLeGLEaVRkRPGMYIGst~~~--GLhhLv~EIlDNSVDE~laG~~~~I~V~i~~-----DgsItV~D 167 (903)
T PTZ00109 99 EYDADDIV----VLEGLEAVRKRPGMYIGNTDEK--GLHQLLFEILDNSVDEYLAGECNKITVVLHK-----DGSVEISD 167 (903)
T ss_pred CCChHhCe----ehhccHHHhcCCCceeCCCCCC--cceEEEEEEeeccchhhccCCCcEEEEEEcC-----CCeEEEEe
Confidence 47664421 2345666666664 33322211 11124579999999988777 7888888853 24699999
Q ss_pred CCCCCCHHHHH--------hhhh-ccccccccC-------------------------------------------CCcc
Q 045475 177 NGGGMTPDKMR--------QCMS-LGYSAKSKL-------------------------------------------ANTI 204 (662)
Q Consensus 177 NG~GM~~eel~--------~~~~-~G~S~K~~~-------------------------------------------~~~I 204 (662)
||.||+-+.-. -+|. +....|-.+ .-+.
T Consensus 168 nGRGIPvd~h~k~g~s~~E~VlT~LhAGGKF~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSG 247 (903)
T PTZ00109 168 NGRGIPCDVSEKTGKSGLETVLTVLHSGGKFQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSS 247 (903)
T ss_pred CCccccccccccCCCcceeEEEEEeccCccccCcccccccccccccccccccccccccccccccccccccccCCcceecC
Confidence 99999874322 1222 111111000 1357
Q ss_pred CcccccccccccccCCEEEEEeeeCC
Q 045475 205 GQYGNGFKTSTMRLGADVIVFSRCQG 230 (662)
Q Consensus 205 G~fG~GlKsAs~rlg~~v~V~Sk~~g 230 (662)
|..|+|. +++-.|...+.|.+++.|
T Consensus 248 GLHGVG~-SVVNALS~~l~VeV~RdG 272 (903)
T PTZ00109 248 GLHGVGL-SVVNALSSFLKVDVFKGG 272 (903)
T ss_pred cCCCcce-eeeeeccCeEEEEEEECC
Confidence 8999997 567789999999999876
No 69
>PRK10490 sensor protein KdpD; Provisional
Probab=96.84 E-value=0.0024 Score=77.29 Aligned_cols=92 Identities=17% Similarity=0.182 Sum_probs=66.3
Q ss_pred hhHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc-
Q 045475 133 KWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF- 211 (662)
Q Consensus 133 ~~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl- 211 (662)
.....++.+||+||+.+.. ....|.|.+... ++...|.|.|||.||+++++.++|...++.+.. ...+-.|+||
T Consensus 777 ~~L~qVL~NLL~NAik~s~-~g~~I~I~~~~~--~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~--~~~~G~GLGL~ 851 (895)
T PRK10490 777 PLFERVLINLLENAVKYAG-AQAEIGIDAHVE--GERLQLDVWDNGPGIPPGQEQLIFDKFARGNKE--SAIPGVGLGLA 851 (895)
T ss_pred HHHHHHHHHHHHHHHHhCC-CCCeEEEEEEEe--CCEEEEEEEECCCCCCHHHHHHhcCCCccCCCC--CCCCCccHHHH
Confidence 3455789999999999732 234677776643 356789999999999999999999866654321 1223357777
Q ss_pred --cccccccCCEEEEEeeeC
Q 045475 212 --KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 212 --KsAs~rlg~~v~V~Sk~~ 229 (662)
|...-.+|+++.+.|...
T Consensus 852 Ivk~ive~hGG~I~v~s~~~ 871 (895)
T PRK10490 852 ICRAIVEVHGGTIWAENRPE 871 (895)
T ss_pred HHHHHHHHcCCEEEEEECCC
Confidence 455567899999988654
No 70
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=96.72 E-value=0.005 Score=75.95 Aligned_cols=94 Identities=17% Similarity=0.182 Sum_probs=62.2
Q ss_pred hHHHHHHHHhccchhhhhcCCceEEEEEEecCC-CCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc-
Q 045475 134 WALGAFAELLDNSLDEVCNGATYVQVDLLKNKT-DGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF- 211 (662)
Q Consensus 134 ~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~-~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl- 211 (662)
....+|.+||+||+++...+...|.+....... .....|.|.|||.||+++++.++|...++.+.. ..-+-.|+||
T Consensus 828 ~l~qvl~NLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~--~~~~G~GLGL~ 905 (1197)
T PRK09959 828 AFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAG--RQQTGSGLGLM 905 (1197)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhccccccccC--CCCCCcCchHH
Confidence 445799999999999754333233333222111 123468999999999999999999866554321 1223468887
Q ss_pred --cccccccCCEEEEEeeeC
Q 045475 212 --KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 212 --KsAs~rlg~~v~V~Sk~~ 229 (662)
|...-.+|+.+.|.|...
T Consensus 906 i~~~iv~~~gG~i~v~s~~~ 925 (1197)
T PRK09959 906 ICKELIKNMQGDLSLESHPG 925 (1197)
T ss_pred HHHHHHHHcCCEEEEEeCCC
Confidence 444567999999998753
No 71
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=96.68 E-value=0.0056 Score=72.41 Aligned_cols=90 Identities=14% Similarity=0.192 Sum_probs=64.5
Q ss_pred hhHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhh-ccccccccCCCccCccccc-
Q 045475 133 KWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMS-LGYSAKSKLANTIGQYGNG- 210 (662)
Q Consensus 133 ~~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~-~G~S~K~~~~~~IG~fG~G- 210 (662)
.....+|-+|||||.-..- ..++|.|..... .+.-.+.|.|||.||+++++.++|. |-+-.|..+ .-|+|
T Consensus 774 ~LieQVLiNLleNA~Kyap-~~s~I~I~~~~~--~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~~~-----~~G~GL 845 (890)
T COG2205 774 PLIEQVLINLLENALKYAP-PGSEIRINAGVE--RENVVFSVIDEGPGIPEGELERIFDKFYRGNKESA-----TRGVGL 845 (890)
T ss_pred HHHHHHHHHHHHHHHhhCC-CCCeEEEEEEEe--cceEEEEEEeCCCCCChhHHHHhhhhhhcCCCCCC-----CCCccc
Confidence 4556899999999998621 245688877764 3678899999999999999999997 443333222 23554
Q ss_pred -c---cccccccCCEEEEEeeeCC
Q 045475 211 -F---KTSTMRLGADVIVFSRCQG 230 (662)
Q Consensus 211 -l---KsAs~rlg~~v~V~Sk~~g 230 (662)
| +...-.+|+.+.+.++..+
T Consensus 846 GLsIc~~iv~ahgG~I~a~~~~~g 869 (890)
T COG2205 846 GLAICRGIVEAHGGTISAENNPGG 869 (890)
T ss_pred cHHHHHHHHHHcCCeEEEEEcCCC
Confidence 4 4555678999999885443
No 72
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=96.51 E-value=0.0056 Score=66.05 Aligned_cols=75 Identities=31% Similarity=0.386 Sum_probs=59.7
Q ss_pred hhHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccc-cc
Q 045475 133 KWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGN-GF 211 (662)
Q Consensus 133 ~~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~-Gl 211 (662)
.-.|-++.|.|-|++-. ++|+.|.|.+..+. +...|.|.|||.|.+.+... |-||+ ||
T Consensus 278 ~~l~rivQEaltN~~rH--a~A~~v~V~l~~~~--~~l~l~V~DnG~Gf~~~~~~-----------------~~~GL~~m 336 (365)
T COG4585 278 DALFRIVQEALTNAIRH--AQATEVRVTLERTD--DELRLEVIDNGVGFDPDKEG-----------------GGFGLLGM 336 (365)
T ss_pred HHHHHHHHHHHHHHHhc--cCCceEEEEEEEcC--CEEEEEEEECCcCCCccccC-----------------CCcchhhH
Confidence 44567999999999997 78999999998753 56899999999999876532 33454 55
Q ss_pred cccccccCCEEEEEeee
Q 045475 212 KTSTMRLGADVIVFSRC 228 (662)
Q Consensus 212 KsAs~rlg~~v~V~Sk~ 228 (662)
+.=...+|+.+.|.|..
T Consensus 337 reRv~~lgG~l~i~S~~ 353 (365)
T COG4585 337 RERVEALGGTLTIDSAP 353 (365)
T ss_pred HHHHHHcCCEEEEEecC
Confidence 55566799999999997
No 73
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.44 E-value=0.01 Score=70.39 Aligned_cols=94 Identities=22% Similarity=0.420 Sum_probs=65.4
Q ss_pred HHHHHhccchhhh--------hcC---CceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHh-hh---------------
Q 045475 138 AFAELLDNSLDEV--------CNG---ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQ-CM--------------- 190 (662)
Q Consensus 138 AIaELVDNAiDA~--------~ag---At~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~-~~--------------- 190 (662)
-+-.||-||+|.= .+| .-.|.|.-. ..++.-.|.|.|||.||+++.+.+ ++
T Consensus 436 PL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~--~~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lSd 513 (716)
T COG0643 436 PLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAY--HEGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLSD 513 (716)
T ss_pred cHHHHHhcchhccCCCHHHHHHcCCCCcceEEEEEE--cCCCeEEEEEeeCCCCCCHHHHHHHHHHcCCCChHHhccCCH
Confidence 4578999999942 122 124555544 346778899999999999887743 43
Q ss_pred --------hccccccccCCCccCcccccc---cccccccCCEEEEEeeeCCCCCcee
Q 045475 191 --------SLGYSAKSKLANTIGQYGNGF---KTSTMRLGADVIVFSRCQGTDGKCS 236 (662)
Q Consensus 191 --------~~G~S~K~~~~~~IG~fG~Gl---KsAs~rlg~~v~V~Sk~~g~~G~~~ 236 (662)
..|||++.. ...+.=.|+|| |+..-++|+.+.|.|+... |.+.
T Consensus 514 ~Ei~~LIF~PGFSTa~~-VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G~--GT~F 567 (716)
T COG0643 514 EEILNLIFAPGFSTAEQ-VTDVSGRGVGMDVVKTNIEQLGGSISVSSEPGK--GTTF 567 (716)
T ss_pred HHHHHHHhcCCCCcchh-hhcccCCccCHHHHHHHHHHcCCEEEEEecCCC--CeEE
Confidence 445666543 24455569998 8999999999999999753 4444
No 74
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=96.35 E-value=0.009 Score=67.68 Aligned_cols=69 Identities=26% Similarity=0.421 Sum_probs=51.7
Q ss_pred HHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc---
Q 045475 135 ALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF--- 211 (662)
Q Consensus 135 pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl--- 211 (662)
...++.|+++||+.+ +.+..|.|++..+ ++.-.|.|.|||.||++++. ..|+|+
T Consensus 411 L~ril~nlL~NAiKh--a~~~~I~I~l~~~--~~~i~l~V~DnG~Gi~~~~~-------------------~~GLGL~iv 467 (495)
T PRK11644 411 LFRVCQEGLNNIVKH--ADASAVTLQGWQQ--DERLMLVIEDDGSGLPPGSG-------------------QQGFGLRGM 467 (495)
T ss_pred HHHHHHHHHHHHHHh--CCCCEEEEEEEEc--CCEEEEEEEECCCCCCcCCC-------------------CCCCcHHHH
Confidence 446889999999997 4566788877653 35678999999999986521 127776
Q ss_pred cccccccCCEEEEEe
Q 045475 212 KTSTMRLGADVIVFS 226 (662)
Q Consensus 212 KsAs~rlg~~v~V~S 226 (662)
+...-.+|+++.+.|
T Consensus 468 r~iv~~~GG~i~v~S 482 (495)
T PRK11644 468 RERVTALGGTLTISC 482 (495)
T ss_pred HHHHHHcCCEEEEEc
Confidence 444567999999988
No 75
>PLN03237 DNA topoisomerase 2; Provisional
Probab=96.23 E-value=0.0088 Score=74.88 Aligned_cols=86 Identities=21% Similarity=0.236 Sum_probs=60.0
Q ss_pred HHHHHHhccchhhh-hcC-CceEEEEEEecCCCCeeEEEEEECCCCCCHHHH--------Hhhhh-ccccccccC---CC
Q 045475 137 GAFAELLDNSLDEV-CNG-ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKM--------RQCMS-LGYSAKSKL---AN 202 (662)
Q Consensus 137 ~AIaELVDNAiDA~-~ag-At~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel--------~~~~~-~G~S~K~~~---~~ 202 (662)
..|-|+||||+|.. .++ ++.|.|.|... ...|+|.|||.||+.+-- +-+|. +-.++|-.+ ..
T Consensus 80 kifdEIldNAvDe~~r~g~~~~I~V~I~~~----~gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd~~yKv 155 (1465)
T PLN03237 80 KIFDEILVNAADNKQRDPKMDSLRVVIDVE----QNLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDDNEKKT 155 (1465)
T ss_pred hhHHHHhhhhHhHHhhcCCCCEEEEEEEcC----CCEEEEEecCccccCCCCCCCCCccceEEEEeeeccccCCCCccee
Confidence 67899999999976 323 67888888632 357999999999987521 11233 333343221 24
Q ss_pred ccCcccccccccccccCCEEEEEee
Q 045475 203 TIGQYGNGFKTSTMRLGADVIVFSR 227 (662)
Q Consensus 203 ~IG~fG~GlKsAs~rlg~~v~V~Sk 227 (662)
+-|+.|+|.+ .+-.+...+.|.++
T Consensus 156 SGGlhGVGas-vvNaLS~~f~Vev~ 179 (1465)
T PLN03237 156 TGGRNGYGAK-LTNIFSTEFVIETA 179 (1465)
T ss_pred eccccccCcc-ccccccCeeEEEEE
Confidence 6799999985 45568999999997
No 76
>PRK13560 hypothetical protein; Provisional
Probab=96.22 E-value=0.0061 Score=70.75 Aligned_cols=73 Identities=26% Similarity=0.365 Sum_probs=50.8
Q ss_pred HHHHHhccchhhhhcC--CceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc---c
Q 045475 138 AFAELLDNSLDEVCNG--ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF---K 212 (662)
Q Consensus 138 AIaELVDNAiDA~~ag--At~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl---K 212 (662)
+|.+||.||+.+...+ ...|.|.+.... ++...|.|.|||.||+++.. + . ... |+|| |
T Consensus 715 il~NLl~NAik~~~~~~~~~~i~i~~~~~~-~~~v~i~V~D~G~GI~~~~~-----~----~--~~~-----gLGLai~~ 777 (807)
T PRK13560 715 IISELLSNALKHAFPDGAAGNIKVEIREQG-DGMVNLCVADDGIGLPAGFD-----F----R--AAE-----TLGLQLVC 777 (807)
T ss_pred HHHHHHHHHHHhhccCCCCceEEEEEEEcC-CCEEEEEEEeCCCcCCcccc-----c----c--ccC-----CccHHHHH
Confidence 6789999999964222 346777665431 34578999999999998631 0 0 001 6777 5
Q ss_pred ccccccCCEEEEEee
Q 045475 213 TSTMRLGADVIVFSR 227 (662)
Q Consensus 213 sAs~rlg~~v~V~Sk 227 (662)
...-.+|+.+.|.|.
T Consensus 778 ~iv~~~gG~I~v~S~ 792 (807)
T PRK13560 778 ALVKQLDGEIALDSR 792 (807)
T ss_pred HHHHHcCCEEEEEcC
Confidence 666789999999985
No 77
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=96.17 E-value=0.0042 Score=72.25 Aligned_cols=86 Identities=23% Similarity=0.209 Sum_probs=58.8
Q ss_pred HHHHHhccchhhhhc---C-CceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHh-----------hhh-cccccccc--
Q 045475 138 AFAELLDNSLDEVCN---G-ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQ-----------CMS-LGYSAKSK-- 199 (662)
Q Consensus 138 AIaELVDNAiDA~~a---g-At~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~-----------~~~-~G~S~K~~-- 199 (662)
.+-|+||||+|...+ + ++.|.|.+. + ..|+|.|||.||+.+--.. +|. +....|-.
T Consensus 49 i~~EIldNavDe~~~~~~g~~~~I~V~i~-d-----gsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkFd~~ 122 (602)
T PHA02569 49 IIDEIIDNSVDEAIRTNFKFANKIDVTIK-N-----NQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNFDDT 122 (602)
T ss_pred eeehhhhhhhhhhhccCCCCCcEEEEEEc-C-----CEEEEEECCCcccCCcccccccccccceEEEEEeeccccccCCc
Confidence 457999999998766 4 788888885 2 3699999999998743211 122 22233321
Q ss_pred CCCccCcccccccccccccCCEEEEEeeeCC
Q 045475 200 LANTIGQYGNGFKTSTMRLGADVIVFSRCQG 230 (662)
Q Consensus 200 ~~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~g 230 (662)
-.-+-|..|+|.+ ++-.|...+.|.++..+
T Consensus 123 ykvSGGlhGVG~s-vvNaLS~~~~V~v~~~~ 152 (602)
T PHA02569 123 NRVTGGMNGVGSS-LTNFFSVLFIGETCDGK 152 (602)
T ss_pred ceeeCCcCCccce-eeeccchhhheEEEcCC
Confidence 1235799999974 56678888888876543
No 78
>PLN03128 DNA topoisomerase 2; Provisional
Probab=96.12 E-value=0.011 Score=73.05 Aligned_cols=87 Identities=22% Similarity=0.218 Sum_probs=60.6
Q ss_pred HHHHHHhccchhhhh-cC-CceEEEEEEecCCCCeeEEEEEECCCCCCHHHHH--------hhhh-ccccccccC---CC
Q 045475 137 GAFAELLDNSLDEVC-NG-ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMR--------QCMS-LGYSAKSKL---AN 202 (662)
Q Consensus 137 ~AIaELVDNAiDA~~-ag-At~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~--------~~~~-~G~S~K~~~---~~ 202 (662)
..+-|+||||+|... ++ ++.|.|.|..+ ...|+|.|||.||+.+--. -+|. +-.++|-.+ ..
T Consensus 55 ki~dEIldNAvDe~~~~g~~~~I~V~i~~~----dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFdd~~ykv 130 (1135)
T PLN03128 55 KIFDEILVNAADNKQRDPSMDSLKVDIDVE----QNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFDDNEKKT 130 (1135)
T ss_pred HHHHHHHHHHHHHhhhcCCCcEEEEEEEcC----CCeEEEEecCccccCCCCCCCCCccceEEEEeeccccccCCcccee
Confidence 578999999999763 33 68888888642 3579999999999875221 1233 333444222 24
Q ss_pred ccCcccccccccccccCCEEEEEeee
Q 045475 203 TIGQYGNGFKTSTMRLGADVIVFSRC 228 (662)
Q Consensus 203 ~IG~fG~GlKsAs~rlg~~v~V~Sk~ 228 (662)
+-|+.|+|.| .+-.+...+.|.+..
T Consensus 131 SGGlhGvGas-vvNaLS~~f~Vev~d 155 (1135)
T PLN03128 131 TGGRNGYGAK-LANIFSTEFTVETAD 155 (1135)
T ss_pred eccccCCCCe-EEEeecCeEEEEEEE
Confidence 6799999985 556689999999983
No 79
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=96.12 E-value=0.011 Score=74.21 Aligned_cols=88 Identities=23% Similarity=0.217 Sum_probs=62.4
Q ss_pred HHHHHHhccchhhhh----cC-CceEEEEEEecCCCCeeEEEEEECCCCCCHHHHH--------hhhh-ccccccccC--
Q 045475 137 GAFAELLDNSLDEVC----NG-ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMR--------QCMS-LGYSAKSKL-- 200 (662)
Q Consensus 137 ~AIaELVDNAiDA~~----ag-At~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~--------~~~~-~G~S~K~~~-- 200 (662)
..+-|+||||+|... ++ ++.|.|.|..+ ...|+|.|||.||+.+.-. -+|. +..++|-.+
T Consensus 60 ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~~d----~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfdd~~ 135 (1388)
T PTZ00108 60 KIFDEILVNAADNKARDKGGHRMTYIKVTIDEE----NGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYDDTE 135 (1388)
T ss_pred hhHHHHhhhhhhhhcccCCCCCccEEEEEEecc----CCeEEEEecCCcccCCCCCCCCCccceEEEEEeeccccCCCCc
Confidence 578999999999875 23 68888888642 2579999999999875321 1233 333343221
Q ss_pred -CCccCcccccccccccccCCEEEEEeeeC
Q 045475 201 -ANTIGQYGNGFKTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 201 -~~~IG~fG~GlKsAs~rlg~~v~V~Sk~~ 229 (662)
..+-|+.|+|.| ++-.+...+.|.+.+.
T Consensus 136 yKvSGGlhGVGas-vvNalS~~f~Vev~r~ 164 (1388)
T PTZ00108 136 KRVTGGRNGFGAK-LTNIFSTKFTVECVDS 164 (1388)
T ss_pred eeeecccccCCcc-ccccccceEEEEEEEC
Confidence 246799999985 5566999999999986
No 80
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=96.07 E-value=0.017 Score=65.97 Aligned_cols=74 Identities=27% Similarity=0.306 Sum_probs=54.6
Q ss_pred hHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc--
Q 045475 134 WALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF-- 211 (662)
Q Consensus 134 ~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl-- 211 (662)
+.+.++.|+|+||+.+ +.++.|.|.+... ++...|.|.|||.||+++.. + .-|+||
T Consensus 469 ~l~~il~ell~NA~kh--a~a~~i~V~~~~~--~~~~~l~V~D~G~Gi~~~~~----------~--------~~glGL~i 526 (569)
T PRK10600 469 HLLQIAREALSNALKH--AQASEVVVTVAQN--QNQVKLSVQDNGCGVPENAE----------R--------SNHYGLII 526 (569)
T ss_pred HHHHHHHHHHHHHHHh--CCCCeEEEEEEEc--CCEEEEEEEECCCCCCcccc----------C--------CCCccHHH
Confidence 4567899999999997 4567788887653 35678999999999998631 0 015565
Q ss_pred -cccccccCCEEEEEeeeC
Q 045475 212 -KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 212 -KsAs~rlg~~v~V~Sk~~ 229 (662)
+...-++|+.+.|.|...
T Consensus 527 ~~~~~~~lgG~l~i~s~~~ 545 (569)
T PRK10600 527 MRDRAQSLRGDCRVRRRES 545 (569)
T ss_pred HHHHHHHcCCEEEEEECCC
Confidence 444567999999998754
No 81
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=96.01 E-value=0.025 Score=52.32 Aligned_cols=83 Identities=23% Similarity=0.252 Sum_probs=53.6
Q ss_pred HHHHHHhccchhhhh--cCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCccccccccc
Q 045475 137 GAFAELLDNSLDEVC--NGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGFKTS 214 (662)
Q Consensus 137 ~AIaELVDNAiDA~~--agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~GlKsA 214 (662)
.|+.||+.||+.... .....|.|.+... ++...|.|.|||.||+. +.+++...++.+. ..+..|+||..
T Consensus 42 ~~l~eli~Nai~h~~~~~~~~~I~v~~~~~--~~~~~i~I~D~G~gi~~--~~~~~~~~~~~~~----~~~~~GlGL~l- 112 (137)
T TIGR01925 42 TAVSEAVTNAIIHGYEENCEGVVYISATIE--DHEVYITVRDEGIGIEN--LEEAREPLYTSKP----ELERSGMGFTV- 112 (137)
T ss_pred HHHHHHHHHHHHhccCCCCCcEEEEEEEEe--CCEEEEEEEEcCCCcCc--hhHhhCCCcccCC----CCCCCcccHHH-
Confidence 689999999997411 1134677777653 35678999999999983 4556654444332 12345888743
Q ss_pred ccccCCEEEEEeee
Q 045475 215 TMRLGADVIVFSRC 228 (662)
Q Consensus 215 s~rlg~~v~V~Sk~ 228 (662)
.-++.+++.+.+..
T Consensus 113 v~~~~~~l~~~~~~ 126 (137)
T TIGR01925 113 MENFMDDVSVDSEK 126 (137)
T ss_pred HHHhCCcEEEEECC
Confidence 33466777776653
No 82
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=95.69 E-value=0.035 Score=50.37 Aligned_cols=79 Identities=24% Similarity=0.255 Sum_probs=52.9
Q ss_pred HHHHHHHhccchhhhhcCC--ceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccccc
Q 045475 136 LGAFAELLDNSLDEVCNGA--TYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGFKT 213 (662)
Q Consensus 136 f~AIaELVDNAiDA~~agA--t~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~GlKs 213 (662)
..|+.|++-||+.....+. ..|.|.+... .+...|.|.|+|.|+++..+......+. .....-|.|+..
T Consensus 33 ~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~--~~~l~i~v~D~G~~~d~~~~~~~~~~~~-------~~~~~~G~Gl~l 103 (125)
T PF13581_consen 33 ELAVSEALTNAVEHGYPGDPDGPVDVRLEVD--PDRLRISVRDNGPGFDPEQLPQPDPWEP-------DSLREGGRGLFL 103 (125)
T ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEEEEEc--CCEEEEEEEECCCCCChhhccCcccccC-------CCCCCCCcCHHH
Confidence 3699999999999743222 3566665553 4568899999999999987765432211 122233777743
Q ss_pred cccccCCEEEE
Q 045475 214 STMRLGADVIV 224 (662)
Q Consensus 214 As~rlg~~v~V 224 (662)
.-++.+.+.+
T Consensus 104 -i~~l~D~~~~ 113 (125)
T PF13581_consen 104 -IRSLMDEVDY 113 (125)
T ss_pred -HHHHHcEEEE
Confidence 3458888888
No 83
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=95.60 E-value=0.024 Score=62.06 Aligned_cols=90 Identities=20% Similarity=0.326 Sum_probs=67.5
Q ss_pred HHHHHHhccchhhhhcC-------CceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccC------CCc
Q 045475 137 GAFAELLDNSLDEVCNG-------ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKL------ANT 203 (662)
Q Consensus 137 ~AIaELVDNAiDA~~ag-------At~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~------~~~ 203 (662)
-.+.||+.||..|.... -..|.|.+..+ ++...|.|.|-|+|++.+++..+|++++|+-... ...
T Consensus 263 ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~g--deDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d~~~~~p 340 (414)
T KOG0787|consen 263 YMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKG--DEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSDNNRTAP 340 (414)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecC--CcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCCCCCcCc
Confidence 38899999999987532 13477877754 3567899999999999999999999999975421 234
Q ss_pred cCccccccc---ccccccCCEEEEEeee
Q 045475 204 IGQYGNGFK---TSTMRLGADVIVFSRC 228 (662)
Q Consensus 204 IG~fG~GlK---sAs~rlg~~v~V~Sk~ 228 (662)
+--||.|+. .-.--.|+++.+.|-.
T Consensus 341 laGfG~GLPisrlYa~yf~Gdl~L~Sle 368 (414)
T KOG0787|consen 341 LAGFGFGLPISRLYARYFGGDLKLQSLE 368 (414)
T ss_pred ccccccCCcHHHHHHHHhCCCeeEEeee
Confidence 566888874 3334578888888875
No 84
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=95.56 E-value=0.029 Score=64.71 Aligned_cols=88 Identities=19% Similarity=0.247 Sum_probs=62.6
Q ss_pred HHHHHHHHhccchhhhhcC-Cce---EEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCccccc
Q 045475 135 ALGAFAELLDNSLDEVCNG-ATY---VQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNG 210 (662)
Q Consensus 135 pf~AIaELVDNAiDA~~ag-At~---V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~G 210 (662)
.-.|+.+|+.||.+|+.+. +.. -.|.+..+..+|...+.|.|||.|.+.+.+++++..--+++.++ . |+|
T Consensus 601 l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~EPYvTtr~KG-T-----GLG 674 (712)
T COG5000 601 LGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHRALEPYVTTREKG-T-----GLG 674 (712)
T ss_pred HHHHHHHHHHhHHHHhhhcccccCCcceEEEEEecCCCeEEEEEecCCCCCChHHhhhhccCceeccccc-c-----ccc
Confidence 3379999999999988532 111 13455555556788999999999999999999998655554331 1 666
Q ss_pred c---cccccccCCEEEEEeee
Q 045475 211 F---KTSTMRLGADVIVFSRC 228 (662)
Q Consensus 211 l---KsAs~rlg~~v~V~Sk~ 228 (662)
| |...--.|+.+.+.-..
T Consensus 675 LAiVKkIvEeHGG~leL~da~ 695 (712)
T COG5000 675 LAIVKKIVEEHGGRLELHNAP 695 (712)
T ss_pred HHHHHHHHHhcCCeEEecCCC
Confidence 5 55666778888776665
No 85
>PRK03660 anti-sigma F factor; Provisional
Probab=95.43 E-value=0.051 Score=50.66 Aligned_cols=83 Identities=20% Similarity=0.278 Sum_probs=51.9
Q ss_pred HHHHHHhccchhhhhcC-C-ceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCccccccccc
Q 045475 137 GAFAELLDNSLDEVCNG-A-TYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGFKTS 214 (662)
Q Consensus 137 ~AIaELVDNAiDA~~ag-A-t~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~GlKsA 214 (662)
.|+.|++.||+...... . ..|.|.+... ++...|.|.|+|.||++ +...+...++.+.. -+.-|+|+..+
T Consensus 42 ~~l~eli~Nai~h~~~~~~~~~i~i~~~~~--~~~l~i~I~D~G~g~~~--~~~~~~~~~~~~~~----~~~~GlGL~i~ 113 (146)
T PRK03660 42 TAVSEAVTNAIIHGYENNPDGVVYIEVEIE--EEELEITVRDEGKGIED--IEEAMQPLYTTKPE----LERSGMGFTVM 113 (146)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEEEEC--CCEEEEEEEEccCCCCh--HHHhhCCCcccCCC----CCCccccHHHH
Confidence 68999999999742111 1 3577766543 35678999999999986 44555544443211 12348888543
Q ss_pred ccccCCEEEEEeee
Q 045475 215 TMRLGADVIVFSRC 228 (662)
Q Consensus 215 s~rlg~~v~V~Sk~ 228 (662)
.+++..+.+.+..
T Consensus 114 -~~~~~~i~~~~~~ 126 (146)
T PRK03660 114 -ESFMDEVEVESEP 126 (146)
T ss_pred -HHhCCeEEEEecC
Confidence 3577777776543
No 86
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=95.40 E-value=0.033 Score=53.97 Aligned_cols=85 Identities=15% Similarity=0.202 Sum_probs=55.1
Q ss_pred HHHHHHhccchhhhhcC--CceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCccccccccc
Q 045475 137 GAFAELLDNSLDEVCNG--ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGFKTS 214 (662)
Q Consensus 137 ~AIaELVDNAiDA~~ag--At~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~GlKsA 214 (662)
-|+.|++.||+.....+ ...|.|.+... ++...|.|.|+|.|++++.+...+........ ......-|.||..+
T Consensus 45 lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~--~~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~--~~~~~~~G~GL~Li 120 (159)
T TIGR01924 45 IAVSEACTNAVKHAYKEGENGEIGISFHIY--EDRLEIIVSDQGDSFDMDTFKQSLGPYDGSEP--IDDLREGGLGLFLI 120 (159)
T ss_pred HHHHHHHHHHHHhccCCCCCCeEEEEEEEe--CCEEEEEEEEcccccCchhhccccCCCCCCCC--cccCCCCccCHHHH
Confidence 58999999999963221 24677777653 45688999999999999887765532221111 11122338887433
Q ss_pred ccccCCEEEEEe
Q 045475 215 TMRLGADVIVFS 226 (662)
Q Consensus 215 s~rlg~~v~V~S 226 (662)
-++.+.+.+.+
T Consensus 121 -~~L~D~v~~~~ 131 (159)
T TIGR01924 121 -ETLMDEVEVYE 131 (159)
T ss_pred -HHhccEEEEEe
Confidence 36778888765
No 87
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=95.35 E-value=0.024 Score=54.84 Aligned_cols=85 Identities=16% Similarity=0.171 Sum_probs=54.0
Q ss_pred HHHHHHhccchhhhhcC--CceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCccccccccc
Q 045475 137 GAFAELLDNSLDEVCNG--ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGFKTS 214 (662)
Q Consensus 137 ~AIaELVDNAiDA~~ag--At~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~GlKsA 214 (662)
.|+.|++-||+.....+ ...|.|.+... ++...|.|.|+|.||+++.+...+...+..+... ....-|+||..+
T Consensus 45 lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~--~~~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~~~--~~~~~G~GL~li 120 (161)
T PRK04069 45 IAVSEACTNAVQHAYKEDEVGEIHIRFEIY--EDRLEIVVADNGVSFDYETLKSKLGPYDISKPIE--DLREGGLGLFLI 120 (161)
T ss_pred HHHHHHHHHHHHhccCCCCCCeEEEEEEEE--CCEEEEEEEECCcCCChHHhccccCCCCCCCccc--ccCCCceeHHHH
Confidence 68999999999963222 13567766553 4678999999999999988877665433222111 111237777433
Q ss_pred ccccCCEEEEEe
Q 045475 215 TMRLGADVIVFS 226 (662)
Q Consensus 215 s~rlg~~v~V~S 226 (662)
- ++.+.+.+.+
T Consensus 121 ~-~l~d~v~~~~ 131 (161)
T PRK04069 121 E-TLMDDVTVYK 131 (161)
T ss_pred H-HHHHhEEEEc
Confidence 2 4566676664
No 88
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=95.19 E-value=0.042 Score=62.61 Aligned_cols=84 Identities=29% Similarity=0.446 Sum_probs=64.0
Q ss_pred hhhhhccchhHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCcc
Q 045475 125 LHSNATSHKWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTI 204 (662)
Q Consensus 125 L~s~stsh~~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~I 204 (662)
|.+....|-. ..+.|-+-||+.. +.|+.|+|.+..+. |...+.|.|||+|++... ...
T Consensus 474 lpa~qqvHlL--qIvREAlsNa~KH--a~As~i~V~~~~~~--g~~~~~VeDnG~Gi~~~~----------------e~~ 531 (574)
T COG3850 474 LPAHQQVHLL--QIVREALSNAIKH--AQASEIKVTVSQND--GQVTLTVEDNGVGIDEAA----------------EPS 531 (574)
T ss_pred CCHHHHHHHH--HHHHHHHHHHHHh--cccCeEEEEEEecC--CeEEEEEeeCCcCCCCcc----------------CCC
Confidence 4444445544 4899999999997 67999999998753 788999999999999762 345
Q ss_pred Ccccccc-cccccccCCEEEEEeeeCC
Q 045475 205 GQYGNGF-KTSTMRLGADVIVFSRCQG 230 (662)
Q Consensus 205 G~fG~Gl-KsAs~rlg~~v~V~Sk~~g 230 (662)
|.||+-. .-=.-++++++.|..+..|
T Consensus 532 gHyGL~IM~ERA~~L~~~L~i~~~~~g 558 (574)
T COG3850 532 GHYGLNIMRERAQRLGGQLRIRRREGG 558 (574)
T ss_pred CCcchHHHHHHHHHhcCeEEEeecCCC
Confidence 7888864 2223479999999998765
No 89
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=94.11 E-value=0.095 Score=60.90 Aligned_cols=104 Identities=20% Similarity=0.231 Sum_probs=70.2
Q ss_pred eeeeChhhhhhhhccchhHHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhh---cc
Q 045475 117 HLRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMS---LG 193 (662)
Q Consensus 117 ~~~~~p~fL~s~stsh~~pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~---~G 193 (662)
..++.| |......-...-..+.+||.||+-.-....+.|.|.... .+....+.|.|||.|+++.-++++|. .+
T Consensus 621 ei~i~~--lp~v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~I~~~r--~ed~~t~sV~dng~Gi~~a~~~riF~iFqRl 696 (750)
T COG4251 621 EIRIAP--LPVVAADATQLGQVFQNLIANAIKFGGPENPDIEISAER--QEDEWTFSVRDNGIGIDPAYFERIFVIFQRL 696 (750)
T ss_pred eEEecc--cceeecCHHHHHHHHHHHHhhheecCCCCCCceEEeeec--cCCceEEEecCCCCCcCHHHHHHHHHHHHhc
Confidence 345555 555554433333677899999998643345667777544 34567899999999999999999865 33
Q ss_pred ccccccCCCccCcccccc---cccccccCCEEEEEeeeC
Q 045475 194 YSAKSKLANTIGQYGNGF---KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 194 ~S~K~~~~~~IG~fG~Gl---KsAs~rlg~~v~V~Sk~~ 229 (662)
++.... .| -|+|+ |-..-+.++.+.|.|+..
T Consensus 697 ~s~~~y----~g-tG~GL~I~kkI~e~H~G~i~vEs~~g 730 (750)
T COG4251 697 HSRDEY----LG-TGLGLAICKKIAERHQGRIWVESTPG 730 (750)
T ss_pred Cchhhh----cC-CCccHHHHHHHHHHhCceEEEeecCC
Confidence 333222 22 47776 455667888999999853
No 90
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=93.89 E-value=0.11 Score=58.54 Aligned_cols=61 Identities=18% Similarity=0.247 Sum_probs=49.6
Q ss_pred HHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccc
Q 045475 137 GAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKS 198 (662)
Q Consensus 137 ~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~ 198 (662)
.++-+|+-||+||+.-.|.-|+|...-+ .++..+|.|.|||.|-+.+-+.+.+..-.++|.
T Consensus 567 QVlvNl~~NaldA~~h~~p~i~~~~~~~-~~e~l~i~i~DnGqGwp~~l~dkLl~PFttsK~ 627 (673)
T COG4192 567 QVLVNLIVNALDASTHFAPWIKLIALGT-EQEMLRIAIIDNGQGWPHELVDKLLTPFTTSKE 627 (673)
T ss_pred HHHHHHHHHHHhhhccCCceEEEEeecC-cccceEEEEecCCCCCchhHHHHhcCCcccccc
Confidence 6788999999999876677677766543 256688999999999999999999997777764
No 91
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=93.65 E-value=0.083 Score=59.28 Aligned_cols=72 Identities=17% Similarity=0.229 Sum_probs=47.5
Q ss_pred hHHHHHHHHhccchhhhh-cCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCccccccc
Q 045475 134 WALGAFAELLDNSLDEVC-NGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGFK 212 (662)
Q Consensus 134 ~pf~AIaELVDNAiDA~~-agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~GlK 212 (662)
.|--.|.=|||||+.+-. .......|.+.....++...+.|.|||.||+++.......-|..+ -|+|+.
T Consensus 350 ~p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~~~~~~~~~r----------~giGL~ 419 (456)
T COG2972 350 DPKLVLQPLVENAIEHGIEPKRPGGSIAISAKKQDDVIQISISDNGPGIDEEKLEGLSTKGENR----------SGIGLS 419 (456)
T ss_pred CchHHHhHHHHHHHHHhcccCCCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHHHHHhhccCc----------ccccHH
Confidence 344688999999999742 122333444443333567889999999999999988665433222 488985
Q ss_pred ccc
Q 045475 213 TST 215 (662)
Q Consensus 213 sAs 215 (662)
..-
T Consensus 420 Nv~ 422 (456)
T COG2972 420 NVK 422 (456)
T ss_pred HHH
Confidence 443
No 92
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=93.48 E-value=0.18 Score=56.79 Aligned_cols=74 Identities=23% Similarity=0.304 Sum_probs=51.5
Q ss_pred HHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc---
Q 045475 135 ALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF--- 211 (662)
Q Consensus 135 pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl--- 211 (662)
...++.+|+.||+.+ +.+..|.|.+.... ++...|.|.|||.||+++... .-|+||
T Consensus 472 l~qv~~nll~NA~k~--~~~~~i~i~~~~~~-~~~~~i~V~D~G~Gi~~~~~~------------------~~glGL~i~ 530 (565)
T PRK10935 472 LLQIIREATLNAIKH--ANASEIAVSCVTNP-DGEHTVSIRDDGIGIGELKEP------------------EGHYGLNIM 530 (565)
T ss_pred HHHHHHHHHHHHHhc--CCCCeEEEEEEEcC-CCEEEEEEEECCcCcCCCCCC------------------CCCcCHHHH
Confidence 336889999999986 34556777776531 345789999999999873210 114555
Q ss_pred cccccccCCEEEEEeeeC
Q 045475 212 KTSTMRLGADVIVFSRCQ 229 (662)
Q Consensus 212 KsAs~rlg~~v~V~Sk~~ 229 (662)
+...-.+|+.+.|.|...
T Consensus 531 ~~iv~~~~G~i~v~s~~~ 548 (565)
T PRK10935 531 QERAERLGGTLTISQPPG 548 (565)
T ss_pred HHHHHHcCCEEEEEECCC
Confidence 455567999999988754
No 93
>PRK13559 hypothetical protein; Provisional
Probab=92.81 E-value=0.22 Score=52.88 Aligned_cols=74 Identities=12% Similarity=0.070 Sum_probs=49.2
Q ss_pred HHHHHHHhccchhhh--hcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc--
Q 045475 136 LGAFAELLDNSLDEV--CNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF-- 211 (662)
Q Consensus 136 f~AIaELVDNAiDA~--~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl-- 211 (662)
..++.|||.||+.+- ......|.|.+.....++...|.|.|||+||+++.- .-|+|+
T Consensus 269 ~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~~~~-------------------~~g~Gl~i 329 (361)
T PRK13559 269 GLVLHELAVNAIKHGALSADQGRISISWKPSPEGAGFRIDWQEQGGPTPPKLA-------------------KRGFGTVI 329 (361)
T ss_pred HHHHHHHHHhHHHhccccCCCcEEEEEEEecCCCCeEEEEEECCCCCCCCCCC-------------------CCCcHHHH
Confidence 368999999999962 112356777773333355678999999999766410 116665
Q ss_pred -cccccc-cCCEEEEEeee
Q 045475 212 -KTSTMR-LGADVIVFSRC 228 (662)
Q Consensus 212 -KsAs~r-lg~~v~V~Sk~ 228 (662)
+...-+ +|+.+.+.+..
T Consensus 330 ~~~~v~~~~gG~i~~~~~~ 348 (361)
T PRK13559 330 IGAMVESQLNGQLEKTWSD 348 (361)
T ss_pred HHHHHHHHcCCeEEEEEcC
Confidence 333344 99999988763
No 94
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=91.74 E-value=0.54 Score=45.44 Aligned_cols=87 Identities=17% Similarity=0.249 Sum_probs=54.2
Q ss_pred HHHHHHHHhccchhhhhcCC---ceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccc
Q 045475 135 ALGAFAELLDNSLDEVCNGA---TYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGF 211 (662)
Q Consensus 135 pf~AIaELVDNAiDA~~agA---t~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~Gl 211 (662)
.-.|+.|++.|++.+.-+.. ..|.|.+... ++...++|.|-|.|+ +++...+..++.... .+-.-|+||
T Consensus 41 l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~--~~~~~i~i~D~G~~~--~~~~~~~~~~~~~~~----~~~~~G~Gl 112 (146)
T COG2172 41 LAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLD--DGKLEIRIWDQGPGI--EDLEESLGPGDTTAE----GLQEGGLGL 112 (146)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEc--CCeEEEEEEeCCCCC--CCHHHhcCCCCCCCc----ccccccccH
Confidence 34899999999999742221 4566666654 467899999999554 556666666644322 121225555
Q ss_pred cccccccCCEEEEEeeeCC
Q 045475 212 KTSTMRLGADVIVFSRCQG 230 (662)
Q Consensus 212 KsAs~rlg~~v~V~Sk~~g 230 (662)
....++-+++.+.....+
T Consensus 113 -~l~~~~~D~~~~~~~~~~ 130 (146)
T COG2172 113 -FLAKRLMDEFSYERSEDG 130 (146)
T ss_pred -HHHhhhheeEEEEeccCC
Confidence 233457788887755433
No 95
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=91.17 E-value=0.4 Score=51.92 Aligned_cols=86 Identities=21% Similarity=0.155 Sum_probs=53.8
Q ss_pred HHHHHHhccchhhhhcCC---ceEEEEE------EecCCC--CeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccC
Q 045475 137 GAFAELLDNSLDEVCNGA---TYVQVDL------LKNKTD--GTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIG 205 (662)
Q Consensus 137 ~AIaELVDNAiDA~~agA---t~V~I~i------~~~~~~--g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG 205 (662)
.|+-+||.||..|....+ ..|.+.- ..-... -...|.|.|||.|++++-....|..--|+|... +
T Consensus 244 Qv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~r~~G-s--- 319 (363)
T COG3852 244 QVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSGREGG-T--- 319 (363)
T ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeeeeeEEecCCCCCChHHhhhccccccccCCCC-c---
Confidence 899999999999864211 2232221 110000 023588999999999999999998766765421 2
Q ss_pred cccccccccc---cccCCEEEEEeee
Q 045475 206 QYGNGFKTST---MRLGADVIVFSRC 228 (662)
Q Consensus 206 ~fG~GlKsAs---~rlg~~v~V~Sk~ 228 (662)
|+||..|. -..|+.+...|..
T Consensus 320 --GLGLala~~li~qH~G~Ie~~S~P 343 (363)
T COG3852 320 --GLGLALAQNLIDQHGGKIEFDSWP 343 (363)
T ss_pred --cccHHHHHHHHHhcCCEEEEeccC
Confidence 77773322 3455666666654
No 96
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=91.08 E-value=0.51 Score=51.90 Aligned_cols=87 Identities=15% Similarity=0.254 Sum_probs=60.4
Q ss_pred HHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhh-ccccccccCCCccCcccccc---c
Q 045475 137 GAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMS-LGYSAKSKLANTIGQYGNGF---K 212 (662)
Q Consensus 137 ~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~-~G~S~K~~~~~~IG~fG~Gl---K 212 (662)
..|-++|.||+..-- +...|.|.+.. .+..-.|.|.|.|.||+.+++.++|. |-+-.|.+ .+..|-=|+|| |
T Consensus 345 QVldNii~NA~KYsP-~Gg~Itv~~~~--~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkAR-sR~~gGTGLGLaIak 420 (459)
T COG5002 345 QVLDNIISNALKYSP-DGGRITVSVKQ--RETWVEISISDQGLGIPKEDLEKIFDRFYRVDKAR-SRKMGGTGLGLAIAK 420 (459)
T ss_pred HHHHHHHHHHhhcCC-CCCeEEEEEee--eCcEEEEEEccCCCCCCchhHHHHHHHHhhhhhhh-hhcCCCCchhHHHHH
Confidence 678888889887521 24567777654 34567899999999999999999987 43333322 24566668887 4
Q ss_pred ccccccCCEEEEEee
Q 045475 213 TSTMRLGADVIVFSR 227 (662)
Q Consensus 213 sAs~rlg~~v~V~Sk 227 (662)
...-..|+.+-..|.
T Consensus 421 eiV~~hgG~iWA~s~ 435 (459)
T COG5002 421 EIVQAHGGRIWAESE 435 (459)
T ss_pred HHHHHhCCeEEEecc
Confidence 555567777766665
No 97
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=89.55 E-value=0.55 Score=48.21 Aligned_cols=48 Identities=25% Similarity=0.361 Sum_probs=35.3
Q ss_pred HHHHHHhccchhhhhc--CCceEEEEEEecCCCCeeEEEEEECCCCCCHH
Q 045475 137 GAFAELLDNSLDEVCN--GATYVQVDLLKNKTDGTHMLLVEDNGGGMTPD 184 (662)
Q Consensus 137 ~AIaELVDNAiDA~~a--gAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~e 184 (662)
-+|.||+-||+....- ....|.|.+.....++...+.|.|||.|++.+
T Consensus 125 liv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~ 174 (221)
T COG3920 125 LIVHELVTNALKHAFLSRPGGEIRITLSREGDGGRFLLTVWDEGGGPPVE 174 (221)
T ss_pred HHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCCCeEEEEEEECCCCCCCC
Confidence 3899999999997422 24567777776542224789999999999865
No 98
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=89.53 E-value=0.76 Score=50.77 Aligned_cols=70 Identities=30% Similarity=0.471 Sum_probs=50.1
Q ss_pred HHHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCccccccc--
Q 045475 135 ALGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGFK-- 212 (662)
Q Consensus 135 pf~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~GlK-- 212 (662)
.+-..-|++.|-... |.|+.|+|.+..+ ++..+++|.|||.|+++.. |+-|.|++
T Consensus 411 LyRl~QE~LNNI~KH--A~AS~V~i~l~~~--~e~l~Lei~DdG~Gl~~~~-------------------~v~G~Gl~Gm 467 (497)
T COG3851 411 LYRLCQELLNNICKH--ADASAVTIQLWQQ--DERLMLEIEDDGSGLPPGS-------------------GVQGFGLTGM 467 (497)
T ss_pred HHHHHHHHHHHHHhc--cccceEEEEEeeC--CcEEEEEEecCCcCCCCCC-------------------CccCcCcchH
Confidence 346778999999886 6789999988764 3457899999999998642 12244443
Q ss_pred -ccccccCCEEEEEee
Q 045475 213 -TSTMRLGADVIVFSR 227 (662)
Q Consensus 213 -sAs~rlg~~v~V~Sk 227 (662)
--+-.+|+++++.|.
T Consensus 468 rERVsaLGG~ltlssq 483 (497)
T COG3851 468 RERVSALGGTLTLSSQ 483 (497)
T ss_pred HHHHHHhCCceEEEec
Confidence 233458999998774
No 99
>PF14501 HATPase_c_5: GHKL domain
Probab=84.36 E-value=3.9 Score=36.12 Aligned_cols=76 Identities=14% Similarity=0.282 Sum_probs=44.9
Q ss_pred HHHHHHhccchhhhhcC--CceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccccc-
Q 045475 137 GAFAELLDNSLDEVCNG--ATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGFKT- 213 (662)
Q Consensus 137 ~AIaELVDNAiDA~~ag--At~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~GlKs- 213 (662)
..++.|+|||++|+... .+.|.|.+... ++...|.|...... + ..... .++ ...+..|+||++
T Consensus 8 ~il~nlldNAiea~~~~~~~~~I~i~~~~~--~~~~~i~i~N~~~~-~---~~~~~---~~~-----~~~~~~G~GL~~v 73 (100)
T PF14501_consen 8 RILGNLLDNAIEACKKYEDKRFISISIREE--NGFLVIIIENSCEK-E---IEKLE---SSS-----SKKKGHGIGLKNV 73 (100)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEEEec--CCEEEEEEEECCCC-c---ccccc---ccc-----cCCCCCCcCHHHH
Confidence 68999999999997432 45777777653 46677777776444 1 11111 111 123455999853
Q ss_pred --cccccCCEEEEEe
Q 045475 214 --STMRLGADVIVFS 226 (662)
Q Consensus 214 --As~rlg~~v~V~S 226 (662)
...+.++.+.+..
T Consensus 74 ~~i~~~y~g~~~~~~ 88 (100)
T PF14501_consen 74 KKILEKYNGSLSIES 88 (100)
T ss_pred HHHHHHCCCEEEEEE
Confidence 3345566555443
No 100
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=79.11 E-value=4.5 Score=44.47 Aligned_cols=77 Identities=27% Similarity=0.356 Sum_probs=53.0
Q ss_pred HHHHHHHhccchhhhh--cCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHHHhhhhccccccccCCCccCcccccccc
Q 045475 136 LGAFAELLDNSLDEVC--NGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKMRQCMSLGYSAKSKLANTIGQYGNGFKT 213 (662)
Q Consensus 136 f~AIaELVDNAiDA~~--agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel~~~~~~G~S~K~~~~~~IG~fG~GlKs 213 (662)
.+|+--.+.-|+.-+. ++|+.|.|.+.. .++.-.+.|.|||.|.+..+...-+ .|+||..
T Consensus 357 ~talyRv~QEaltNIErHa~Atrv~ill~~--~~d~vql~vrDnG~GF~~~~~~~~~----------------~GiGLRN 418 (459)
T COG4564 357 ATALYRVVQEALTNIERHAGATRVTILLQQ--MGDMVQLMVRDNGVGFSVKEALQKR----------------HGIGLRN 418 (459)
T ss_pred HHHHHHHHHHHHHHHHhhcCCeEEEEEecc--CCcceEEEEecCCCCccchhhccCc----------------ccccccc
Confidence 3566666666655442 578888877753 3567789999999999987765221 3888732
Q ss_pred ---cccccCCEEEEEeeeCC
Q 045475 214 ---STMRLGADVIVFSRCQG 230 (662)
Q Consensus 214 ---As~rlg~~v~V~Sk~~g 230 (662)
-.-.+|+.+.|.|...|
T Consensus 419 MrERma~~GG~~~v~s~p~G 438 (459)
T COG4564 419 MRERMAHFGGELEVESSPQG 438 (459)
T ss_pred HHHHHHHhCceEEEEecCCC
Confidence 12348999999998776
No 101
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=66.72 E-value=11 Score=36.09 Aligned_cols=25 Identities=28% Similarity=0.624 Sum_probs=21.0
Q ss_pred hHHHHhHHHhhhchHHHHHHHHHHh
Q 045475 629 SLINIFQEELKRSDAKVERLRERLR 653 (662)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (662)
..-.-+.-|++|++.|.++|++||.
T Consensus 126 ~~~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 126 QRKTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445577899999999999999985
No 102
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=64.45 E-value=8.9 Score=44.04 Aligned_cols=45 Identities=29% Similarity=0.465 Sum_probs=32.0
Q ss_pred HHHHHhccchhhhhc---CCceEEEEEEecCCCCeeEEEEEECCCCCCHH
Q 045475 138 AFAELLDNSLDEVCN---GATYVQVDLLKNKTDGTHMLLVEDNGGGMTPD 184 (662)
Q Consensus 138 AIaELVDNAiDA~~a---gAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~e 184 (662)
.|-=||+||+-.-.. +.-.|.|.+... +....+.|.|||.|+.++
T Consensus 460 ilQPLVENAIKHG~~~~~~~g~V~I~V~~~--d~~l~i~VeDng~li~p~ 507 (557)
T COG3275 460 ILQPLVENAIKHGISQLKDTGRVTISVEKE--DADLRIEVEDNGGLIQPD 507 (557)
T ss_pred hhhHHHHHHHHhcccchhcCCceEEEEEEe--CCeEEEEEecCCCCcCCC
Confidence 346689999985311 123577766653 456899999999999997
No 103
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=59.76 E-value=18 Score=37.77 Aligned_cols=40 Identities=35% Similarity=0.523 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhcccchhH---HHHhHHHhhh
Q 045475 601 NLLSKLKEVENKLRELEKKEKVLIDDNASL---INIFQEELKR 640 (662)
Q Consensus 601 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 640 (662)
-||++.++...||+|++++.+-|++.+.-| ++-.+|++||
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~ 174 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKR 174 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388999999999999999988666665433 3334444444
No 104
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=58.72 E-value=25 Score=42.71 Aligned_cols=48 Identities=21% Similarity=0.264 Sum_probs=34.0
Q ss_pred HHHHHHHhccchhhhhcCCceEEEEEEecCCCCeeEEEEEECCCCCCHHHH
Q 045475 136 LGAFAELLDNSLDEVCNGATYVQVDLLKNKTDGTHMLLVEDNGGGMTPDKM 186 (662)
Q Consensus 136 f~AIaELVDNAiDA~~agAt~V~I~i~~~~~~g~~~L~I~DNG~GM~~eel 186 (662)
+..+-|+++||.| ..+++..=.|.+..+. +...|.|.+||.||+-+..
T Consensus 55 ~ki~dEilvNaad-k~rd~~m~~i~v~i~~--e~~~isv~nnGkGIPv~~H 102 (842)
T KOG0355|consen 55 YKIFDEILVNAAD-KQRDPKMNTIKVTIDK--EKNEISVYNNGKGIPVTIH 102 (842)
T ss_pred HHHHHHHhhcccc-cccCCCcceeEEEEcc--CCCEEEEEeCCCcceeeec
Confidence 3678999999999 6566543333333333 4568999999999987654
No 105
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=55.75 E-value=26 Score=44.05 Aligned_cols=29 Identities=21% Similarity=0.075 Sum_probs=18.6
Q ss_pred hhHHHHHHHHhccchhhhhcCCceEEEEEEe
Q 045475 133 KWALGAFAELLDNSLDEVCNGATYVQVDLLK 163 (662)
Q Consensus 133 ~~pf~AIaELVDNAiDA~~agAt~V~I~i~~ 163 (662)
-+| .||..|+.|-=..+ ..++.|.+....
T Consensus 117 ylP-havlkLLeNmP~pW-e~~~evkvlyh~ 145 (2365)
T COG5178 117 YLP-HAVLKLLENMPSPW-EDVSEVKVLYHC 145 (2365)
T ss_pred hch-HHHHHHHhcCCChH-hhhheeeEEeec
Confidence 456 78999999943322 246677766653
No 106
>PRK10884 SH3 domain-containing protein; Provisional
Probab=49.86 E-value=28 Score=35.76 Aligned_cols=51 Identities=20% Similarity=0.320 Sum_probs=26.2
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhhcccchhHHHHhHHHhhhchHHHHHHH
Q 045475 599 TRNLLSKLKEVENKLRELEKKEKVLIDDNASLINIFQEELKRSDAKVERLR 649 (662)
Q Consensus 599 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (662)
+.+++.++..+|+++++++.+-.-+..+......-.+++.+.+++.+++|+
T Consensus 88 ~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~ 138 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLK 138 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777888888888777655443222222333333444444444444333
No 107
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.55 E-value=28 Score=37.68 Aligned_cols=32 Identities=38% Similarity=0.537 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhcccchhHHHHhHHHhhhchHHHHH
Q 045475 601 NLLSKLKEVENKLRELEKKEKVLIDDNASLINIFQEELKRSDAKVER 647 (662)
Q Consensus 601 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (662)
.|+.+-++.++|+|||+.+++ |++||..+..+
T Consensus 61 ~~~~kq~eL~~rqeEL~Rke~---------------ELdRREr~~a~ 92 (313)
T KOG3088|consen 61 DLAKKQAELLKKQEELRRKEQ---------------ELDRRERALAR 92 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------HHhHHHHHHhh
Confidence 366666666666666666655 67777666665
No 108
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.31 E-value=25 Score=37.96 Aligned_cols=40 Identities=30% Similarity=0.434 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhhhhhhhcccchhHHHHhHHHhhhchHHHHHHHHHHhhhcccc
Q 045475 605 KLKEVENKLRELEKKEKVLIDDNASLINIFQEELKRSDAKVERLRERLRVRTTSI 659 (662)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (662)
--+|..++++||+++|| |++|+.+|.+|-..-|..+...|
T Consensus 58 ~a~~~~~kq~eL~~rqe---------------EL~Rke~ELdRREr~~a~~g~~~ 97 (313)
T KOG3088|consen 58 QAKDLAKKQAELLKKQE---------------ELRRKEQELDRRERALARAGIVI 97 (313)
T ss_pred hhhHHHHHHHHHHHHHH---------------HHHHHHHHHhHHHHHHhhccCcc
Confidence 46777888888888877 99999999887555554444333
No 109
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=44.07 E-value=20 Score=34.49 Aligned_cols=29 Identities=28% Similarity=0.549 Sum_probs=25.5
Q ss_pred hHHHHhHHHhhhchHHHHHHHHHHhhhcc
Q 045475 629 SLINIFQEELKRSDAKVERLRERLRVRTT 657 (662)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (662)
++++-++.|...+|.|+.+||++|.+...
T Consensus 94 ~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~ 122 (131)
T PF04859_consen 94 IVVKKLEAELRAKDSEIDRLREKLDELNR 122 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788889999999999999999988653
No 110
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=43.67 E-value=38 Score=32.15 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.6
Q ss_pred chhHHHHHHHHHHHHHHHhhhhh
Q 045475 599 TRNLLSKLKEVENKLRELEKKEK 621 (662)
Q Consensus 599 ~~~l~~~~~~~~~~~~~~~~~~~ 621 (662)
+..|.+++|+.+.++.++++|++
T Consensus 72 ~~eL~er~E~Le~ri~tLekQe~ 94 (119)
T COG1382 72 VDELEERKETLELRIKTLEKQEE 94 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34599999999999999999999
No 111
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=38.60 E-value=40 Score=40.82 Aligned_cols=42 Identities=38% Similarity=0.536 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcccchhHHHHhHHHhhhchHHHHHHHHHHhh
Q 045475 602 LLSKLKEVENKLRELEKKEKVLIDDNASLINIFQEELKRSDAKVERLRERLRV 654 (662)
Q Consensus 602 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (662)
.+-+++..|-+||+++||-+ |..-.+..||+|++|||+--|.
T Consensus 506 al~~~k~~q~kLe~sekEN~-----------iL~itlrQrDaEi~RL~eLtR~ 547 (861)
T PF15254_consen 506 ALVNVKSLQFKLEASEKENQ-----------ILGITLRQRDAEIERLRELTRT 547 (861)
T ss_pred HHHHHHHHhhhHHHHHhhhh-----------HhhhHHHHHHHHHHHHHHHHHH
Confidence 34456677889999999988 5556788999999999986664
No 112
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=38.58 E-value=46 Score=35.10 Aligned_cols=55 Identities=24% Similarity=0.262 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcccchhHHHHhHHHhhhchHHHHHHHHHHhhhc
Q 045475 602 LLSKLKEVENKLRELEKKEKVLIDDNASLINIFQEELKRSDAKVERLRERLRVRT 656 (662)
Q Consensus 602 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (662)
|...|.++.+.++.++++.+.+-..-.++-+-|.+.+++-+.+++.+++......
T Consensus 108 le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~ 162 (239)
T COG1579 108 LEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELS 162 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888999998888888888889999999999999999988655443
No 113
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=37.39 E-value=82 Score=28.14 Aligned_cols=53 Identities=26% Similarity=0.441 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhcccchhHHHHhHHHhhhchHHHHHHHHHHhh
Q 045475 601 NLLSKLKEVENKLRELEKKEKVLIDDNASLINIFQEELKRSDAKVERLRERLRV 654 (662)
Q Consensus 601 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (662)
-|+..|++++-+|+++++-=.+.- .|++=.+|=.+|+.+|.+-+..+|.+++.
T Consensus 43 eL~~~l~~ie~~L~DL~~aV~ive-~np~kF~l~~~Ei~~Rr~fv~~~~~~i~~ 95 (97)
T PF09177_consen 43 ELRNALQSIEWDLEDLEEAVRIVE-KNPSKFNLSEEEISRRRQFVSAIRNQIKQ 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hCccccCCCHHHHHHHHHHHHHHHHHHHh
Confidence 388888888888888887766433 34444588899999999999999998864
No 114
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=36.55 E-value=75 Score=27.47 Aligned_cols=51 Identities=29% Similarity=0.366 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhhhhhhhcccchhHHHHhHHHhhhchHHHHHHHHHHhhh
Q 045475 605 KLKEVENKLRELEKKEKVLIDDNASLINIFQEELKRSDAKVERLRERLRVR 655 (662)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (662)
+|...|.++.+++|+-..-+-++...++-+...+....+++++|+.+|+.+
T Consensus 23 kLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~~ 73 (74)
T PF12329_consen 23 KLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKRA 73 (74)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 444445555555555555555555777777788888899999999998754
No 115
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=34.19 E-value=39 Score=23.32 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHH
Q 045475 601 NLLSKLKEVENKLREL 616 (662)
Q Consensus 601 ~l~~~~~~~~~~~~~~ 616 (662)
.||.+|.|.|+||++-
T Consensus 5 rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 5 RLRNRISDLERQLSEC 20 (23)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4899999999999874
No 116
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=30.92 E-value=70 Score=25.58 Aligned_cols=24 Identities=29% Similarity=0.642 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcc
Q 045475 602 LLSKLKEVENKLRELEKKEKVLID 625 (662)
Q Consensus 602 l~~~~~~~~~~~~~~~~~~~~~~~ 625 (662)
.-.||+|+..|+++|+++.+-|+|
T Consensus 17 IEqkiedid~qIaeLe~KR~~Lv~ 40 (46)
T PF08946_consen 17 IEQKIEDIDEQIAELEAKRQRLVD 40 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999994443
No 117
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=30.42 E-value=38 Score=26.24 Aligned_cols=38 Identities=13% Similarity=0.250 Sum_probs=23.8
Q ss_pred CcceeeecCcccccccccccccchhhhhccccccccccc
Q 045475 539 NVHQILKGGECSSFKMEYISEFDKRLQEESASEDRSCHE 577 (662)
Q Consensus 539 ~~~~~vq~~~c~~w~~~~~~~~~~~~~~~~~~~~~~c~~ 577 (662)
....+|+|+.|.+|--..=+.+...... .....|+|..
T Consensus 10 ~~~~~i~C~~C~~~~H~~C~~~~~~~~~-~~~~~w~C~~ 47 (51)
T PF00628_consen 10 DDGDMIQCDSCNRWYHQECVGPPEKAEE-IPSGDWYCPN 47 (51)
T ss_dssp TTSSEEEBSTTSCEEETTTSTSSHSHHS-HHSSSBSSHH
T ss_pred CCCCeEEcCCCChhhCcccCCCChhhcc-CCCCcEECcC
Confidence 4577899999999975554555432221 1222899963
No 118
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the COG1422 Predicted membrane protein [Function unknown]
Probab=28.24 E-value=87 Score=32.30 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 045475 603 LSKLKEVENKLRELEKKEK 621 (662)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~ 621 (662)
.|+++++|++..|.|++.+
T Consensus 71 ~ekm~~~qk~m~efq~e~~ 89 (201)
T COG1422 71 QEKMKELQKMMKEFQKEFR 89 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4778888888888888777
No 120
>PF01119 DNA_mis_repair: DNA mismatch repair protein, C-terminal domain; InterPro: IPR013507 This entry represents the C-terminal domain of DNA mismatch repair proteins, such as MutL. This domain functions in promoting dimerisation []. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1B62_A 1NHJ_A 1BKN_B 1NHH_A 1B63_A 1NHI_A 3NA3_A 1EA6_A 1H7U_A 1H7S_B ....
Probab=27.75 E-value=1.5e+02 Score=27.21 Aligned_cols=77 Identities=17% Similarity=0.174 Sum_probs=40.3
Q ss_pred eeccccccc-cccccceEEEEcCcccccc--cccc----ccCCCCCceeEEEEec--C--c----cCCCCCcccccc-cH
Q 045475 425 IGFVKDAHY-HIDIQGFNVYHKNRLIKPF--WRVW----NAAGSDGRGAIGVLEA--N--F----VEPAHDKQGFER-TP 488 (662)
Q Consensus 425 ~Gf~~~~~~-~~~~qGf~VY~nnRLI~~f--ekVg----~~~~s~grGVIGVlea--n--f----LePthnKQdFe~-t~ 488 (662)
-||+..+.- .....+.++|=|||.|..- .+.. ......++.-+.||.. + . +.|+=..=-|.+ ..
T Consensus 26 ~G~is~p~~~~~~~~~q~ifVN~R~V~~~~l~~~I~~~y~~~~~~~~~P~~vL~i~~p~~~vDVNvhP~K~eV~f~~e~~ 105 (119)
T PF01119_consen 26 EGYISKPDVSRSSRDRQFIFVNGRPVENKALSKAINEAYRERLPKGRYPIFVLFIEIPPSEVDVNVHPAKREVRFRDEDE 105 (119)
T ss_dssp EEEEE-SSCSBSSCTCEEEEETTEEE--HHHHHHHHHHHHCTTCTTSB-EEEEEEE-SGGGEEETSSTTTT-EEETTHHH
T ss_pred EEEEECchhccCCCCcEEEEeCCCeEeChHHHHHHHHHHhhcccCCCCceEEEEEEcchHHccccccccceEEEecCHHH
Confidence 466655532 2235799999999999532 1111 1223456666666653 2 1 455433333444 34
Q ss_pred HHHHHHHHHHHHH
Q 045475 489 VLARLEARLVAIQ 501 (662)
Q Consensus 489 ~y~~L~~~L~e~l 501 (662)
++..+.+.+.+.+
T Consensus 106 i~~~i~~~i~~~L 118 (119)
T PF01119_consen 106 ILNLIEEAIREAL 118 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6777777766654
No 121
>PRK00295 hypothetical protein; Provisional
Probab=25.70 E-value=2.3e+02 Score=24.12 Aligned_cols=54 Identities=13% Similarity=0.112 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhcccchhHHHHhHHHhhhchHHHHHHHHHHhhhcc
Q 045475 600 RNLLSKLKEVENKLRELEKKEKVLIDDNASLINIFQEELKRSDAKVERLRERLRVRTT 657 (662)
Q Consensus 600 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (662)
||+-++|.+.|-+++-.+.--+ +-...|--=+.+..+-..++..|+.||++..+
T Consensus 1 ~~~e~Ri~~LE~kla~qE~tie----~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00295 1 MSLEERVTELESRQAFQDDTIQ----ALNDVLVEQQRVIERLQLQMAALIKRQEEMVG 54 (68)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4577888888888876554333 11112222233334444567777788887654
No 122
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=25.38 E-value=85 Score=36.51 Aligned_cols=59 Identities=24% Similarity=0.305 Sum_probs=33.0
Q ss_pred CCCCccccccccccccchh-hhhhhhhhcccCCCCCCCCCCccCcccceeeeeChhhhhhh
Q 045475 69 FPSVANDDASKKSEEAEPV-LRACKQFWKAGDYEGGNAGDSLSNSVGMDHLRVHPKFLHSN 128 (662)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~-~~~~~~fw~ag~~~~~~~~~~~~~~~~~~~~~~~p~fL~s~ 128 (662)
+|..++.+-+-.+.++.++ ...-+-|||--.-.+.. |...+.+.+.-+.++||-.+.+-
T Consensus 262 PP~~~~L~~~v~~~~~~~~~r~~~KL~Wr~~~~~~~~-Gv~~~r~~~t~W~s~D~~~~D~~ 321 (817)
T KOG1925|consen 262 PPLAAPLPHSVPDSSALPTKRKTVKLFWRDVKLAGGH-GVSASRPCATLWASLDPVSVDTA 321 (817)
T ss_pred CCCcccCcCCCCCcccccccCceeEEEeecceecCCC-CCccccccchhhhccCcceecHH
Confidence 3444445555555555444 57789999976655444 33444455555566666554433
No 123
>PRK11020 hypothetical protein; Provisional
Probab=25.11 E-value=1.8e+02 Score=27.58 Aligned_cols=52 Identities=19% Similarity=0.300 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhh-cccchhHHHHhHHHhhhchHHHHHHHHH
Q 045475 600 RNLLSKLKEVENKLRELEKKEKVL-IDDNASLINIFQEELKRSDAKVERLRER 651 (662)
Q Consensus 600 ~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (662)
|||+..|+..-++|...+-+..-+ --+++.+|--|..|...-..+.++|+.+
T Consensus 1 m~~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~ 53 (118)
T PRK11020 1 MVEKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEV 53 (118)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777877777777766554433 3456788999999999988999988875
No 124
>PF13397 DUF4109: Domain of unknown function (DUF4109)
Probab=25.03 E-value=1.1e+02 Score=28.56 Aligned_cols=57 Identities=23% Similarity=0.279 Sum_probs=38.6
Q ss_pred ccccchhhhhcccccccccc-cCCCccccccCCCCCC-CCCCCcchh--H--HHHHHHHHHHHHHH
Q 045475 557 ISEFDKRLQEESASEDRSCH-EASPAIDESQRGPGSH-GSSPHGTRN--L--LSKLKEVENKLREL 616 (662)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~c~-~~~~~~~~~~~~~~~~-~~~~~g~~~--l--~~~~~~~~~~~~~~ 616 (662)
..+|.. +-++|+.|.|. .+-++.-..-..|+.+ ..-|-.|-= | ++++++.|.=|+|.
T Consensus 38 ~v~Fa~---eAevP~~WeC~~cG~~A~~~~~~~p~~~~~~kP~rTHwdml~ERRS~eEle~lL~Er 100 (105)
T PF13397_consen 38 EVPFAA---EAEVPATWECPRCGLPAGRDDGNPPEPKRKTKPYRTHWDMLLERRSIEELEELLAER 100 (105)
T ss_pred eccccc---cCCCCCceeCCCCCCcccccCCCCCCCcCCCCCCccHHHHHHHhCCHHHHHHHHHHH
Confidence 489964 88999999999 6666666666677776 556666622 3 34566666656553
No 125
>PRK14145 heat shock protein GrpE; Provisional
Probab=25.03 E-value=1.4e+02 Score=30.57 Aligned_cols=48 Identities=19% Similarity=0.213 Sum_probs=24.0
Q ss_pred CCCcchhHHHHHHHHHHHHHHHhhhhhhhcccchhHHHHhHHHhhhchHHHHHHH
Q 045475 595 SPHGTRNLLSKLKEVENKLRELEKKEKVLIDDNASLINIFQEELKRSDAKVERLR 649 (662)
Q Consensus 595 ~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (662)
.+.-...|+++++..+.+++++..+-. -+..=|..=|+|...+.++++
T Consensus 43 ~~~e~~~l~~~l~~le~e~~el~d~~l-------R~~AEfeN~rkR~~kE~e~~~ 90 (196)
T PRK14145 43 TVDEIEELKQKLQQKEVEAQEYLDIAQ-------RLKAEFENYRKRTEKEKSEMV 90 (196)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 333344466666666666666554443 333334444444444444443
No 126
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=24.45 E-value=1.2e+02 Score=30.35 Aligned_cols=55 Identities=24% Similarity=0.446 Sum_probs=31.7
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhhcccchhHHHHhHHHhhhchHHHHHHHHHHhhhc
Q 045475 599 TRNLLSKLKEVENKLRELEKKEKVLIDDNASLINIFQEELKRSDAKVERLRERLRVRT 656 (662)
Q Consensus 599 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (662)
+.+|..++-..|.+++++.+|.+..-. +.-..-.+|.+.-+.|+++|+..|..+.
T Consensus 120 ~~~li~~l~~~~~~~~~~~kq~~~~~~---~~~~~~~~~~~~~~~ei~~lk~el~~~~ 174 (192)
T PF05529_consen 120 VHSLIKELIKLEEKLEALKKQAESASE---AAEKLLKEENKKLSEEIEKLKKELEKKE 174 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh---hhhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 344888888888888888887662111 1111133455555666666666665543
No 127
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=24.24 E-value=2.1e+02 Score=28.67 Aligned_cols=78 Identities=24% Similarity=0.385 Sum_probs=54.0
Q ss_pred cccchhhhhcccccccccccCCCccccccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHhhhhhhhcccchhHHHHhHHH
Q 045475 558 SEFDKRLQEESASEDRSCHEASPAIDESQRGPGSHGSSPHGTRNLLSKLKEVENKLRELEKKEKVLIDDNASLINIFQEE 637 (662)
Q Consensus 558 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (662)
+||.+-+ +++..-|-|-.+. . .+.-.|.+.|++.+||+.+++.+.+-|-|+ -..-....|.
T Consensus 83 ~Pf~~~~--k~~~~ifkegg~d-------~---------~k~~~~l~~L~e~snki~kLe~~~k~L~d~-Iv~~~~i~e~ 143 (163)
T PF03233_consen 83 SPFESFF--KDLSKIFKEGGGD-------K---------QKQLKLLPTLEEISNKIRKLETEVKKLKDN-IVTEKLIEEL 143 (163)
T ss_pred CcHHHHH--HHHHHHHHhcCCc-------h---------hhHHHHHHHHHHHHHHHHHHHHHHHhHhhh-ccccHHHHHH
Confidence 6776555 5566556676653 1 233348999999999999999988866665 4444555667
Q ss_pred hhhchHHHHHHHHHHhh
Q 045475 638 LKRSDAKVERLRERLRV 654 (662)
Q Consensus 638 ~~~~~~~~~~~~~~~~~ 654 (662)
.|--|.+...+|+.+|.
T Consensus 144 IKd~de~L~~I~d~iK~ 160 (163)
T PF03233_consen 144 IKDFDERLKEIRDKIKK 160 (163)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77777777778887763
No 128
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=22.40 E-value=4.6e+02 Score=31.23 Aligned_cols=81 Identities=14% Similarity=0.031 Sum_probs=39.8
Q ss_pred eecccccc-ccccccceEEEEcCcccccc--ccccc----cCCCCCceeEEEEec--C--ccCC--CCCcccccccHHHH
Q 045475 425 IGFVKDAH-YHIDIQGFNVYHKNRLIKPF--WRVWN----AAGSDGRGAIGVLEA--N--FVEP--AHDKQGFERTPVLA 491 (662)
Q Consensus 425 ~Gf~~~~~-~~~~~qGf~VY~nnRLI~~f--ekVg~----~~~s~grGVIGVlea--n--fLeP--thnKQdFe~t~~y~ 491 (662)
.||+..+. ........++|.|||.|... .+... .....++.-+.||.. + .+++ +-+|....-.. -+
T Consensus 233 ~g~is~p~~~~~~~~~~~~fvN~R~v~~~~l~~ai~~~y~~~~~~~~~P~~~l~i~~~~~~~DvNvhP~K~ev~f~~-e~ 311 (617)
T PRK00095 233 SGYVGLPTLSRANRDYQYLFVNGRYVRDKLLNHAIRQAYHDLLPRGRYPAFVLFLELDPHQVDVNVHPAKHEVRFRD-ER 311 (617)
T ss_pred EEEEeCcccccCCCcceEEEECCcEecCHHHHHHHHHHHHHhccCCCCcEEEEEEEeChHhcccccCCCcCEEEeCC-HH
Confidence 46665542 12345788999999999521 11111 112356666666553 2 1222 33465554432 22
Q ss_pred HHHHHHHHHHHHHHh
Q 045475 492 RLEARLVAIQKEYWC 506 (662)
Q Consensus 492 ~L~~~L~e~l~eYW~ 506 (662)
.+...+.+.++++|.
T Consensus 312 ~i~~~i~~~i~~~l~ 326 (617)
T PRK00095 312 LVHDLIVQAIQEALA 326 (617)
T ss_pred HHHHHHHHHHHHHHh
Confidence 233444444555553
No 129
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=22.16 E-value=1.5e+02 Score=31.97 Aligned_cols=50 Identities=24% Similarity=0.441 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcccchhHHHHhHHHhhhchHHHHHHHHHHhhh
Q 045475 602 LLSKLKEVENKLRELEKKEKVLIDDNASLINIFQEELKRSDAKVERLRERLRVR 655 (662)
Q Consensus 602 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (662)
|++.|+.++.+++.++++-.-+-.|.++| ..-.+|+.+|.||.+.||+--
T Consensus 167 l~~ai~~~~~~~~~~~~~l~~l~~de~~L----e~KIekkk~ELER~qKRL~sL 216 (267)
T PF10234_consen 167 LKEAIKAVQQQLQQTQQQLNNLASDEANL----EAKIEKKKQELERNQKRLQSL 216 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666665555333333354 456778889999999999753
No 130
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=22.09 E-value=1.4e+02 Score=34.22 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhhhhhhcccchhHHHHhH-----------HHhhhchHHHHHHHHHHhhhc
Q 045475 605 KLKEVENKLRELEKKEKVLIDDNASLINIFQ-----------EELKRSDAKVERLRERLRVRT 656 (662)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 656 (662)
+++|+|.+|+.++.|++-.--..--|-.+.- -|-.++.+|.|+||+-|+.|-
T Consensus 260 sl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~~L~kAE 322 (575)
T KOG4403|consen 260 SLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRVALEKAE 322 (575)
T ss_pred HHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 5778888887777775511111001111111 011222368888998888764
No 131
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=21.97 E-value=87 Score=32.06 Aligned_cols=33 Identities=30% Similarity=0.508 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcccchhHHHHh
Q 045475 602 LLSKLKEVENKLRELEKKEKVLIDDNASLINIF 634 (662)
Q Consensus 602 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (662)
++.++..+++||++++-.|+-||.+|..|-+|.
T Consensus 106 mr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKElc 138 (195)
T PF10226_consen 106 MRQEVAQYQQKLKELEDKQEELIRENLELKELC 138 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 899999999999999999998888888887764
No 132
>PRK14158 heat shock protein GrpE; Provisional
Probab=21.11 E-value=2.4e+02 Score=28.87 Aligned_cols=39 Identities=26% Similarity=0.413 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccchhHHHHhHHHhhhchHHHHHHHHHHh
Q 045475 604 SKLKEVENKLRELEKKEKVLIDDNASLINIFQEELKRSDAKVERLRERLR 653 (662)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (662)
+.++.++.++++++++-+ . +.+...|.-++.||+|.|..
T Consensus 40 ~~~~~le~~l~~le~e~~-------e----l~d~~lR~~AefeN~RkR~~ 78 (194)
T PRK14158 40 DRIKELEEALAAKEAEAA-------A----NWDKYLRERADLENYRKRVQ 78 (194)
T ss_pred hHHHHHHHHHHHHHHHHH-------H----HHHHHHHHHHHHHHHHHHHH
Confidence 345555555555554444 1 23334455566666665543
No 133
>PRK00736 hypothetical protein; Provisional
Probab=21.01 E-value=2.7e+02 Score=23.72 Aligned_cols=53 Identities=19% Similarity=0.218 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhcccchhHHHHhHHHhhhchHHHHHHHHHHhhhc
Q 045475 600 RNLLSKLKEVENKLRELEKKEKVLIDDNASLINIFQEELKRSDAKVERLRERLRVRT 656 (662)
Q Consensus 600 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (662)
||+-.+|.+.|-|++-.+.--+ +-...|--=+.+..+-..++..|.+||++..
T Consensus 1 ~~~e~Ri~~LE~klafqe~tie----~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 1 MDAEERLTELEIRVAEQEKTIE----ELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677788888888876553322 1111111222233333455667777777654
Done!